BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015457
         (406 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|449436168|ref|XP_004135866.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]
 gi|449509305|ref|XP_004163550.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]
          Length = 578

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 321/403 (79%), Positives = 363/403 (90%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           ++ G S LTSLSFR+N+ ITAQGM  FA L+NL++LDLE+C  IHGGLV+L+GL KLESL
Sbjct: 176 HIGGFSRLTSLSFRKNSEITAQGMSVFAHLVNLIRLDLEKCPGIHGGLVHLQGLRKLESL 235

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           NIKWCNCITDSD+KPLSGLTNLK LQISCSKVTD+GIAYLKGL KL+LLNLEGCPVTAAC
Sbjct: 236 NIKWCNCITDSDIKPLSGLTNLKGLQISCSKVTDAGIAYLKGLHKLSLLNLEGCPVTAAC 295

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L +LSALG+L YLNL+RC ++DDG E+FS +G+LK+LNLGFN+ITDECLVHLKGLTNLES
Sbjct: 296 LYTLSALGALQYLNLSRCHITDDGSEQFSGLGALKILNLGFNDITDECLVHLKGLTNLES 355

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           LNLDSC I D+GLVNL  L  LKCLELSDT VGS+GLRHLSGL NLE +NLSFT ++D  
Sbjct: 356 LNLDSCRIEDDGLVNLKALHRLKCLELSDTDVGSNGLRHLSGLFNLEKLNLSFTVVTDIG 415

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           L+KL+GLSSLKSLNLD RQITD GLA+LT L GLTHLDLFGARITDSG  YLRNFKNL+S
Sbjct: 416 LKKLSGLSSLKSLNLDTRQITDIGLASLTGLVGLTHLDLFGARITDSGTNYLRNFKNLQS 475

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           LEICGGGLTDAGVK+IKDLSSL +LNLSQN NLTDK+LELISGLTGLVSLN+SNSRITSA
Sbjct: 476 LEICGGGLTDAGVKNIKDLSSLMVLNLSQNGNLTDKSLELISGLTGLVSLNISNSRITSA 535

Query: 364 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           GLRHLK LKNL+ LTLE+C+V+A+DIK+LQS DLPNLVSFRPE
Sbjct: 536 GLRHLKTLKNLKQLTLEACRVSASDIKKLQSTDLPNLVSFRPE 578



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/246 (34%), Positives = 137/246 (55%), Gaps = 4/246 (1%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 210
           S+  S+  ++L  +E+TD  L++L+  +NL+SLNL+ C  I D GL ++ G   L  L  
Sbjct: 129 SQGSSVLSVDLSGSEVTDSGLMNLRNCSNLQSLNLNFCEHISDRGLAHIGGFSRLTSLSF 188

Query: 211 -SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGL 268
             ++++ + G+   + L NL  ++L       G L  L GL  L+SLN+     ITD+ +
Sbjct: 189 RKNSEITAQGMSVFAHLVNLIRLDLEKCPGIHGGLVHLQGLRKLESLNIKWCNCITDSDI 248

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
             L+ LT L  L +  +++TD+G AYL+    L  L + G  +T A +  +  L +L  L
Sbjct: 249 KPLSGLTNLKGLQISCSKVTDAGIAYLKGLHKLSLLNLEGCPVTAACLYTLSALGALQYL 308

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           NLS+ C++TD   E  SGL  L  LN+  + IT   L HLK L NL SL L+SC++  + 
Sbjct: 309 NLSR-CHITDDGSEQFSGLGALKILNLGFNDITDECLVHLKGLTNLESLNLDSCRIEDDG 367

Query: 389 IKRLQS 394
           +  L++
Sbjct: 368 LVNLKA 373


>gi|359484681|ref|XP_002262830.2| PREDICTED: insulin-like growth factor-binding protein complex acid
           labile subunit-like [Vitis vinifera]
 gi|296084545|emb|CBI25566.3| unnamed protein product [Vitis vinifera]
          Length = 578

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 312/404 (77%), Positives = 362/404 (89%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +N+SGLSNLTSLSF+++N +TA+GM+AF+ L+NL KLDLERC+RIHGGL++LKGL KLES
Sbjct: 175 KNISGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKGLTKLES 234

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LNI++C CITDSD+K LSGLT+LK LQ+SCS +TD GI+YLKGL KL LL++EGC VT +
Sbjct: 235 LNIRYCKCITDSDLKALSGLTSLKELQMSCSNITDIGISYLKGLCKLMLLDVEGCHVTTS 294

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CLDSLSAL +L YLNLNRC LSD GCEKFS + +LKVLN+GFN ITD CLVHLKGLTNLE
Sbjct: 295 CLDSLSALVALSYLNLNRCGLSDVGCEKFSGLKNLKVLNMGFNNITDACLVHLKGLTNLE 354

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC I DEGL NLTGL  LKCLELSDT+VGS+GL HLSGLT LES+NLSFT ++D 
Sbjct: 355 SLNLDSCSIEDEGLANLTGLSLLKCLELSDTKVGSNGLCHLSGLTKLESLNLSFTLVTDS 414

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L+KL GL+SLKSLNLDARQITD GLAA+TSLTGLTHLDLFGARI+D+G   LR+FKNL+
Sbjct: 415 GLKKLCGLTSLKSLNLDARQITDAGLAAITSLTGLTHLDLFGARISDAGTNCLRHFKNLQ 474

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           +LEICGGGLTDAGVK+IK L+SLTLLNLSQNCNLTDKTLE+ISGLT LVSLNVSNSRIT+
Sbjct: 475 TLEICGGGLTDAGVKNIKGLASLTLLNLSQNCNLTDKTLEMISGLTALVSLNVSNSRITN 534

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
            GL+HLKPLKNL SL+LESCKVTA++I++LQS  LPNLVSFRPE
Sbjct: 535 NGLQHLKPLKNLLSLSLESCKVTASEIRKLQSTALPNLVSFRPE 578



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
           +L S+++ G  +TD G+  +KD S++ +L+ +    +++  L+ ISGL+ L SL+   S 
Sbjct: 133 SLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSN 192

Query: 360 -ITSAGLRHLKPLKNLRSLTLESC 382
            +T+ G+R    L NL  L LE C
Sbjct: 193 TVTAEGMRAFSSLVNLAKLDLERC 216


>gi|225463572|ref|XP_002270172.1| PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera]
 gi|297743556|emb|CBI36423.3| unnamed protein product [Vitis vinifera]
          Length = 578

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 327/404 (80%), Positives = 367/404 (90%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +++SGLSNLT+LSFRRNNAITAQGM AF+ L+NLVKLDLERC  IHGGL++LKGL KLES
Sbjct: 175 KHISGLSNLTTLSFRRNNAITAQGMSAFSSLVNLVKLDLERCPGIHGGLIHLKGLTKLES 234

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LNI  C+CITD+D+KPLSGLTNLK L+IS SKVTD G+AYLKGL KL LLN+EGCPVTAA
Sbjct: 235 LNINMCHCITDADLKPLSGLTNLKGLEISRSKVTDDGVAYLKGLHKLALLNMEGCPVTAA 294

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL+SLS L SL  LNLNR  LSDDGCE F++  +L+VLNLGFN++TD CLVHLKGLTNLE
Sbjct: 295 CLESLSDLPSLLSLNLNRSMLSDDGCENFARQENLRVLNLGFNDLTDACLVHLKGLTNLE 354

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC I DEGL NLTGL +LKCLELSDT+VGS+GLRHLSGL NLESINLSFT ++D 
Sbjct: 355 SLNLDSCRICDEGLANLTGLRHLKCLELSDTEVGSNGLRHLSGLANLESINLSFTAVTDS 414

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            LRKL+ LSSLKSLNLDARQITD GLAALTSLTGLTHLDLFGARITDSG +YLRNFKNL+
Sbjct: 415 GLRKLSALSSLKSLNLDARQITDAGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQ 474

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLEICGGGLTDAGVK+IKDL+ LT+LNLSQNCNLTDK+LELISGLT LVSL+VSNSRIT+
Sbjct: 475 SLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITN 534

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           AGL+HLK LKNL+SLTL+SCKVT NDIK+LQS+DLPNLVSFRPE
Sbjct: 535 AGLQHLKQLKNLKSLTLDSCKVTVNDIKKLQSKDLPNLVSFRPE 578



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 5/134 (3%)

Query: 263 ITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHI 319
           ++D+ +  ++S    L  +DL G+ IT+SG  +L++  NL++L +  C   ++D G+KHI
Sbjct: 119 VSDSWMDVISSQGVSLLSVDLSGSEITNSGLIHLKDCTNLQALNLNYCDQ-ISDHGLKHI 177

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             LS+LT L+  +N  +T + +   S L  LV L++        GL HLK L  L SL +
Sbjct: 178 SGLSNLTTLSFRRNNAITAQGMSAFSSLVNLVKLDLERCPGIHGGLIHLKGLTKLESLNI 237

Query: 380 ESCK-VTANDIKRL 392
             C  +T  D+K L
Sbjct: 238 NMCHCITDADLKPL 251


>gi|356519276|ref|XP_003528299.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 1 [Glycine max]
          Length = 577

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 324/403 (80%), Positives = 357/403 (88%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E +SGLSNLTSLSFRRN++I+AQGM AF+GL+NLVKLDLERC  IHGGLV+L+GL KLES
Sbjct: 174 ECISGLSNLTSLSFRRNDSISAQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLES 233

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+KWCNCITD DMKPLS L +LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAA
Sbjct: 234 LNLKWCNCITDYDMKPLSELASLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAA 293

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CLDSL+ L +L  LNLNRC LSD+GC+K S++ +LKVLNLGFN ITD CLVHLKGLT LE
Sbjct: 294 CLDSLAELPALSNLNLNRCNLSDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLE 353

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC IGDEGLVNL GL  L CLELSDT+VGS+GL HLSGL++L+ INLSFT ISD 
Sbjct: 354 SLNLDSCKIGDEGLVNLAGLEQLNCLELSDTEVGSNGLHHLSGLSSLQKINLSFTMISDS 413

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           SLRKL+GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLR
Sbjct: 414 SLRKLSGLSSLKSLNLDAYQITDAGLANLTSLTGLTDLDLFGARITDFGTNYLKKFKNLR 473

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLEICGG LTDAGVK+IK+LSSL  LNLSQN NLTDKTLELISGLTGLVSLNVSNSRIT+
Sbjct: 474 SLEICGGVLTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITN 533

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 405
           AGL+HLK LKNLRSLTLESCKVTANDIK+L+S  LPNLVSFRP
Sbjct: 534 AGLQHLKTLKNLRSLTLESCKVTANDIKKLKSIYLPNLVSFRP 576



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 5/134 (3%)

Query: 263 ITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHI 319
           + D  +  ++S  + L  +DL G+ +TD G  YL++ ++L SL +  C   ++D G++ I
Sbjct: 118 VNDNWMGVISSQGSSLLSVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQ-ISDRGLECI 176

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             LS+LT L+  +N +++ + +   SGL  LV L++        GL HL+ L  L SL L
Sbjct: 177 SGLSNLTSLSFRRNDSISAQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNL 236

Query: 380 ESCK-VTANDIKRL 392
           + C  +T  D+K L
Sbjct: 237 KWCNCITDYDMKPL 250


>gi|357468127|ref|XP_003604348.1| F-box/LRR-repeat protein [Medicago truncatula]
 gi|355505403|gb|AES86545.1| F-box/LRR-repeat protein [Medicago truncatula]
          Length = 573

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 306/399 (76%), Positives = 343/399 (85%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           LSNLTSLSFRRN++I+AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLESLN+KW
Sbjct: 175 LSNLTSLSFRRNDSISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKW 234

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
           CNCITDSD+KPLS L +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSL
Sbjct: 235 CNCITDSDIKPLSELASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSL 294

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           S L +L  LNLNRC +SD GCE+FS++  LKVLNLGFN+I D CL H+KGLT LESLNLD
Sbjct: 295 SELPALSNLNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLD 354

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
           SC IGDEGL NL G   L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD  LRKL
Sbjct: 355 SCKIGDEGLENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKL 414

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
            GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLRSLEIC
Sbjct: 415 CGLSSLKSLNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEIC 474

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
            GGLTDAGVK+IK+LSSL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+H
Sbjct: 475 SGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQH 534

Query: 368 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           LK LKNLRSLTLESCKVTANDIK+ +   LPNLVSFRPE
Sbjct: 535 LKTLKNLRSLTLESCKVTANDIKKFKLIHLPNLVSFRPE 573


>gi|357458869|ref|XP_003599715.1| F-box/LRR-repeat protein [Medicago truncatula]
 gi|355488763|gb|AES69966.1| F-box/LRR-repeat protein [Medicago truncatula]
          Length = 585

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 309/412 (75%), Positives = 347/412 (84%), Gaps = 8/412 (1%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E +SGLSNLTSLSFRRN++I+AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLES
Sbjct: 174 ECISGLSNLTSLSFRRNDSISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLES 233

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+KWCNCITDSD+KPLS L +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+A
Sbjct: 234 LNMKWCNCITDSDIKPLSELASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSA 293

Query: 123 CLDSLSA--------LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
           CLDSLS         L +L  LNLNRC +SD GCE+FS++  LKVLNLGFN+I D CL H
Sbjct: 294 CLDSLSGCHEHTIPKLPALSNLNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAH 353

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +KGLT LESLNLDSC IGDEGL NL G   L CLELSDT+VG+ GL HLSGL++LE INL
Sbjct: 354 MKGLTKLESLNLDSCKIGDEGLENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINL 413

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           SFT +SD  LRKL GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD G  Y
Sbjct: 414 SFTVVSDSGLRKLCGLSSLKSLNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNY 473

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           L+ FKNLRSLEIC GGLTDAGVK+IK+LSSL  LNLSQN NLTDKT+ELI+GLT LVSLN
Sbjct: 474 LKKFKNLRSLEICSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLN 533

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           +SN+RITSAGL+HLK LKNLRSLTLESCKVTANDIK+ +   LPNLVSFRPE
Sbjct: 534 LSNTRITSAGLQHLKTLKNLRSLTLESCKVTANDIKKFKLIHLPNLVSFRPE 585



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/245 (34%), Positives = 135/245 (55%), Gaps = 14/245 (5%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL 210
           S+  SL  ++L  +++TD  L +L+   +L SLNL+ C  I D GL  ++GL NL  L  
Sbjct: 128 SQGSSLLSVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSF 187

Query: 211 -SDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTG 267
             +  + + G+   S L NL  ++L    GI  G++  L GL+ L+SLN+     ITD+ 
Sbjct: 188 RRNDSISAQGMSAFSRLVNLVKLDLERCPGIHGGTVH-LQGLTKLESLNMKWCNCITDSD 246

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-------KH-I 319
           +  L+ L  LT L++  +++TD G ++LR  + L  L + G  +T A +       +H I
Sbjct: 247 IKPLSELASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSGCHEHTI 306

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             L +L+ LNL++ CN++D+  E  S L  L  LN+  + I    L H+K L  L SL L
Sbjct: 307 PKLPALSNLNLNR-CNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNL 365

Query: 380 ESCKV 384
           +SCK+
Sbjct: 366 DSCKI 370


>gi|388500850|gb|AFK38491.1| unknown [Medicago truncatula]
          Length = 577

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 304/404 (75%), Positives = 342/404 (84%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E +SGLSNLTSLSFRRN++I+AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLES
Sbjct: 174 ECISGLSNLTSLSFRRNDSISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLES 233

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+KWCNCITDSD+KPLS L +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+A
Sbjct: 234 LNMKWCNCITDSDIKPLSELASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSA 293

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CLDSLS L +L  LNLNRC +S  GCE+FS++  LKVLNLGFN+I D CL H+KGLT LE
Sbjct: 294 CLDSLSELPALSNLNLNRCNISGRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLE 353

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC IGDEGL NL G   L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD 
Sbjct: 354 SLNLDSCKIGDEGLENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDS 413

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            LRKL GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLR
Sbjct: 414 GLRKLCGLSSLKSLNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLR 473

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            LEIC GGLTDAGVK+IK+LSSL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RIT 
Sbjct: 474 PLEICSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITF 533

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           AGL+HLK LKNLR LTLESCKVT NDIK+ +   LPNLVSFRPE
Sbjct: 534 AGLQHLKTLKNLRFLTLESCKVTVNDIKKFKLIHLPNLVSFRPE 577



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 133/237 (56%), Gaps = 6/237 (2%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL 210
           S+  SL  ++L  +++TD  L +L+   +L SLNL+ C  I D GL  ++GL NL  L  
Sbjct: 128 SQGSSLLSVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSF 187

Query: 211 -SDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTG 267
             +  + + G+   S L NL  ++L    GI  G++  L GL+ L+SLN+     ITD+ 
Sbjct: 188 RRNDSISAQGMSAFSRLVNLVKLDLERCPGIHGGTVH-LQGLTKLESLNMKWCNCITDSD 246

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
           +  L+ L  LT L++  +++TD G ++LR  + L  L + G  +T A +  + +L +L+ 
Sbjct: 247 IKPLSELASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSN 306

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           LNL++ CN++ +  E  S L  L  LN+  + I    L H+K L  L SL L+SCK+
Sbjct: 307 LNLNR-CNISGRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKI 362


>gi|182407840|gb|ACB87911.1| F-box-containing protein 1 [Malus x domestica]
          Length = 580

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 304/404 (75%), Positives = 363/404 (89%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +++SGLSNLTSLSF+R++AI+A+GM+AF+GL+NL KLDLERC+ IHGG V+LKGL KL+S
Sbjct: 177 KHISGLSNLTSLSFKRSDAISAEGMRAFSGLLNLEKLDLERCSAIHGGFVHLKGLKKLKS 236

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN++ C CITDSD+K +SGL +L  LQ+S   +TDSGI+YLKGL KL +LNLEGC VTA+
Sbjct: 237 LNVRCCRCITDSDLKTISGLIDLNELQLSNCNITDSGISYLKGLHKLRMLNLEGCNVTAS 296

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL S+SAL +L YLNLNRC LSD+GC+KFS + +LKVL+LGFNEITD CL++LKGLT+LE
Sbjct: 297 CLQSISALVALAYLNLNRCSLSDEGCDKFSGLTNLKVLSLGFNEITDACLMYLKGLTSLE 356

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC IGDEGL NL GL +LK LELSDT+VGS+GLRHLSGL NLES+NLSFT ++D 
Sbjct: 357 SLNLDSCKIGDEGLANLAGLTHLKNLELSDTEVGSNGLRHLSGLKNLESLNLSFTLVTDS 416

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           SL++L+GL+SLKSLNLDARQITD GLAA+TSLTGLTHLDLFGARI+DSGA +L+ FKNL+
Sbjct: 417 SLKRLSGLTSLKSLNLDARQITDAGLAAITSLTGLTHLDLFGARISDSGANHLKYFKNLQ 476

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLEICGGGLTDAGVK+IKDL  LT LN+SQNCNLT+K+LELISGLT LVSLNVSNSRIT+
Sbjct: 477 SLEICGGGLTDAGVKNIKDLVCLTWLNISQNCNLTNKSLELISGLTALVSLNVSNSRITN 536

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
            GL+HLKPLKNLRSLTLESCKVTA++I++LQS  LPNLVSFRPE
Sbjct: 537 EGLQHLKPLKNLRSLTLESCKVTASEIRKLQSDALPNLVSFRPE 580


>gi|224120462|ref|XP_002331054.1| predicted protein [Populus trichocarpa]
 gi|222872984|gb|EEF10115.1| predicted protein [Populus trichocarpa]
          Length = 576

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/404 (73%), Positives = 351/404 (86%), Gaps = 1/404 (0%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           ++LSGL+N+TSLS +++ ++TA+GM+AF+ L+NL  LD+ERC+ IHGGLV+LKGL KLES
Sbjct: 174 KHLSGLTNITSLSLKKSCSVTAEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLES 233

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LNI+ C CITD DMK +SGLTNLK LQIS + VTD G++YL+GLQKL +LNLEGC +T A
Sbjct: 234 LNIRCCKCITDMDMKAISGLTNLKELQISNTNVTDVGVSYLRGLQKLIMLNLEGCNITTA 293

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CLDS+SAL +L YLNLNRC L DDGC+KFS + +LKVL+L FN++TD CLVHLKGL NLE
Sbjct: 294 CLDSISALATLAYLNLNRCHLPDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKGLKNLE 353

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC IGDEG+ NL GL  LK LELSDT VGSSGLRHLSG+ +LE++NLSFT ++DG
Sbjct: 354 SLNLDSCRIGDEGIANLAGL-PLKSLELSDTIVGSSGLRHLSGIPHLENLNLSFTLVTDG 412

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            LRKL+GL+SL+SLNLDARQITD GL ALTSLTGLT LDLFGARITDSG   L+ FKNL+
Sbjct: 413 GLRKLSGLTSLRSLNLDARQITDAGLTALTSLTGLTRLDLFGARITDSGTNCLKYFKNLK 472

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLEICGGGLTDAGVK+IKDL  LT+LNLSQN NLTDKTLELISGLT LVSLNVSNS IT+
Sbjct: 473 SLEICGGGLTDAGVKNIKDLVHLTVLNLSQNTNLTDKTLELISGLTELVSLNVSNSLITN 532

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
            GLR+LKPLKNLR+LTLESCKVTA++IK+LQS +LPNL S RPE
Sbjct: 533 EGLRYLKPLKNLRALTLESCKVTASEIKKLQSTELPNLASVRPE 576



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/252 (36%), Positives = 141/252 (55%), Gaps = 4/252 (1%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 210
           S+  SL  ++L  +++TD  L  LK  +NL+++ L+ C  I D GL +L+GL N+  L L
Sbjct: 128 SQGSSLLSVDLSDSDVTDAGLGLLKDCSNLQAIALNYCNNISDNGLKHLSGLTNITSLSL 187

Query: 211 SDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGL 268
             +  V + G+R  S L NLE++++       G L  L GL  L+SLN+   + ITD  +
Sbjct: 188 KKSCSVTAEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLESLNIRCCKCITDMDM 247

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
            A++ LT L  L +    +TD G +YLR  + L  L + G  +T A +  I  L++L  L
Sbjct: 248 KAISGLTNLKELQISNTNVTDVGVSYLRGLQKLIMLNLEGCNITTACLDSISALATLAYL 307

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           NL++ C+L D   +  SGL  L  L+++ + +T A L HLK LKNL SL L+SC++    
Sbjct: 308 NLNR-CHLPDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKGLKNLESLNLDSCRIGDEG 366

Query: 389 IKRLQSRDLPNL 400
           I  L    L +L
Sbjct: 367 IANLAGLPLKSL 378


>gi|356550632|ref|XP_003543689.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
          Length = 565

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 306/404 (75%), Positives = 344/404 (85%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E +SGLSNL SLSFRRN AI+AQG+  F+GLINLVKLDLERC  IHG LV+++GL  LES
Sbjct: 162 ECISGLSNLASLSFRRNYAISAQGLNTFSGLINLVKLDLERCPGIHGSLVHIQGLTMLES 221

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+ WCNC+ D DMKPLS LTNLKSL+IS +KVTD GI++LKGLQKL LLNLEGC VT A
Sbjct: 222 LNLNWCNCLVDVDMKPLSVLTNLKSLEISFNKVTDFGISFLKGLQKLNLLNLEGCQVTTA 281

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CLDSL  L +L  LNL+RC LS+DGCEKFS++ +LKVLNLGFN+ITD CL HLKGLT L+
Sbjct: 282 CLDSLEELPALSNLNLSRCNLSNDGCEKFSRLENLKVLNLGFNDITDACLAHLKGLTKLK 341

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC I DEGLV+L G   L CLELSDT +GS+GL HLSGL+NLE INLSFT ++D 
Sbjct: 342 SLNLDSCRIEDEGLVHLAGHQQLNCLELSDTGIGSNGLHHLSGLSNLEKINLSFTFVNDS 401

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L KL GLSSLKSLNLDARQ+TDTGLA+LTSLTGLT LDLFGARITD G  YL+ FKNLR
Sbjct: 402 GLSKLCGLSSLKSLNLDARQVTDTGLASLTSLTGLTELDLFGARITDFGTNYLKCFKNLR 461

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            LEICGG LTD GVK+IK+LSSL  LNLSQNCNLTD TLELISGLT L+SLNVSNS IT+
Sbjct: 462 LLEICGGELTDDGVKNIKELSSLKSLNLSQNCNLTDTTLELISGLTDLISLNVSNSGITN 521

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           AGL+HLK LKNLRSL+LESCKVTAN IK+LQS DLPNLVSFRP+
Sbjct: 522 AGLQHLKTLKNLRSLSLESCKVTANGIKKLQSTDLPNLVSFRPQ 565



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/236 (36%), Positives = 133/236 (56%), Gaps = 4/236 (1%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL 210
           S+  SL  L+L  +++TD  L  L   TN+ SLNL+ C  I D GL  ++GL NL  L  
Sbjct: 116 SQGSSLLHLDLSASDVTDHGLTFLGHCTNIISLNLNHCHQISDHGLECISGLSNLASLSF 175

Query: 211 -SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGL 268
             +  + + GL   SGL NL  ++L       GSL  + GL+ L+SLNL+    + D  +
Sbjct: 176 RRNYAISAQGLNTFSGLINLVKLDLERCPGIHGSLVHIQGLTMLESLNLNWCNCLVDVDM 235

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
             L+ LT L  L++   ++TD G ++L+  + L  L + G  +T A +  +++L +L+ L
Sbjct: 236 KPLSVLTNLKSLEISFNKVTDFGISFLKGLQKLNLLNLEGCQVTTACLDSLEELPALSNL 295

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           NLS+ CNL++   E  S L  L  LN+  + IT A L HLK L  L+SL L+SC++
Sbjct: 296 NLSR-CNLSNDGCEKFSRLENLKVLNLGFNDITDACLAHLKGLTKLKSLNLDSCRI 350



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 263 ITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHI 319
           + D  +  ++S  + L HLDL  + +TD G  +L +  N+ SL +  C   ++D G++ I
Sbjct: 106 VDDAWMDVISSQGSSLLHLDLSASDVTDHGLTFLGHCTNIISLNLNHCHQ-ISDHGLECI 164

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             LS+L  L+  +N  ++ + L   SGL  LV L++         L H++ L  L SL L
Sbjct: 165 SGLSNLASLSFRRNYAISAQGLNTFSGLINLVKLDLERCPGIHGSLVHIQGLTMLESLNL 224

Query: 380 ESCKVTAN-DIKRL 392
             C    + D+K L
Sbjct: 225 NWCNCLVDVDMKPL 238


>gi|297844484|ref|XP_002890123.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335965|gb|EFH66382.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 578

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 315/405 (77%), Positives = 363/405 (89%), Gaps = 1/405 (0%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E+LSGLSNLTSLSFRRN AITAQGM+A + L+N+ KLDLE+C  IHGGLV+L+GL KLES
Sbjct: 174 EHLSGLSNLTSLSFRRNAAITAQGMRALSNLVNMKKLDLEKCPGIHGGLVHLRGLTKLES 233

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTA 121
           LNIKWCNCITD+DM+PLS LTNL+SLQI CS++TD GI+YLKGL KL LLNLEGC  VTA
Sbjct: 234 LNIKWCNCITDADMEPLSELTNLRSLQICCSRITDIGISYLKGLNKLNLLNLEGCRHVTA 293

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           ACLD+L+AL  L +LNLNRC  SD GCEKFS + +LK+LNLG N IT+ CLVHL+GLT L
Sbjct: 294 ACLDTLTALTGLMFLNLNRCNFSDSGCEKFSDLINLKILNLGMNSITNSCLVHLRGLTKL 353

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           ESLNLDSC IGDEGLV+L+G+  LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D
Sbjct: 354 ESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTD 413

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             LRKL+GL+SL++LNLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG  +LRN K L
Sbjct: 414 SGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKL 473

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           +SLEICGGGLTD GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++
Sbjct: 474 QSLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVS 533

Query: 362 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           S+GLRHLKPLKNLRSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 534 SSGLRHLKPLKNLRSLTLESCKLSANDIRKLQATDLPNLVNFRPE 578



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 165/342 (48%), Gaps = 70/342 (20%)

Query: 107 QKLTLLNLEG---CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-KIGSLKVLNL 162
           Q+LTL +LE    C +   CL          Y  +N     DD  +  S +  SL  ++ 
Sbjct: 92  QRLTLKSLEAFRDCAIQDLCLGE--------YPGVN-----DDWMDVISSQSTSLLSVDF 138

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGL 220
             ++ITD  LV LKG TNLESLN + C  I + GL +L+GL NL  L    +  + + G+
Sbjct: 139 SGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLEHLSGLSNLTSLSFRRNAAITAQGM 198

Query: 221 R------------------------HLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKS 255
           R                        HL GLT LES+N+ +   I+D  +  L+ L++L+S
Sbjct: 199 RALSNLVNMKKLDLEKCPGIHGGLVHLRGLTKLESLNIKWCNCITDADMEPLSELTNLRS 258

Query: 256 LNLDARQITDTGLA-------------------------ALTSLTGLTHLDLFGARITDS 290
           L +   +ITD G++                          LT+LTGL  L+L     +DS
Sbjct: 259 LQICCSRITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALTGLMFLNLNRCNFSDS 318

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
           G     +  NL+ L +    +T++ + H++ L+ L  LNL  +C + D+ L  +SG+  L
Sbjct: 319 GCEKFSDLINLKILNLGMNSITNSCLVHLRGLTKLESLNL-DSCRIGDEGLVHLSGMLEL 377

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            SL +S++ + S GLRHL  L NL S+ L    VT + +++L
Sbjct: 378 KSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKL 419


>gi|30684506|ref|NP_563980.2| leucine-rich repeat-containing protein [Arabidopsis thaliana]
 gi|23297087|gb|AAN13089.1| unknown protein [Arabidopsis thaliana]
 gi|332191234|gb|AEE29355.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]
          Length = 585

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 316/404 (78%), Positives = 360/404 (89%), Gaps = 1/404 (0%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +LSGLSNLTSLSFRRN AITAQGM+A + L+NL KLDLE+C  I GGLV+L+ L KLESL
Sbjct: 182 HLSGLSNLTSLSFRRNAAITAQGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESL 241

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAA 122
           NIKWCNCITD+DM+PLS LTNL+SLQI CSK+TD GI+YLKGL KL LLNLEGC  VTAA
Sbjct: 242 NIKWCNCITDADMEPLSVLTNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAA 301

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CLD+L+AL  L YLNLNRC  SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LE
Sbjct: 302 CLDTLTALAGLMYLNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLE 361

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC IGDEGLV+L+G+  LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D 
Sbjct: 362 SLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDS 421

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            LRKL+GL+SL++LNLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG  +LRN K L+
Sbjct: 422 GLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQ 481

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLEICGGGLTD GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S
Sbjct: 482 SLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSS 541

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           +GLRHLKPLKNLRSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 542 SGLRHLKPLKNLRSLTLESCKLSANDIRKLQATDLPNLVNFRPE 585



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 146/293 (49%), Gaps = 53/293 (18%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTG--------- 201
           S+  SL  ++   ++ITD  LV LKG TNLESLN + C  I + GLV+L+G         
Sbjct: 135 SQSTSLLSVDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSF 194

Query: 202 ----------------LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSL 244
                           L NLK L+L        GL HL  LT LES+N+ +   I+D  +
Sbjct: 195 RRNAAITAQGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADM 254

Query: 245 RKLAGLSSLKSLNLDARQITDTGLA-------------------------ALTSLTGLTH 279
             L+ L++L+SL +   +ITD G++                          LT+L GL +
Sbjct: 255 EPLSVLTNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMY 314

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L+L     +DSG     +  NL+ L +    +T++ + H+K L+ L  LNL  +C + D+
Sbjct: 315 LNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNL-DSCRIGDE 373

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            L  +SG+  L SL +S++ + S GLRHL  L NL S+ L    VT + +++L
Sbjct: 374 GLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKL 426


>gi|13507547|gb|AAK28636.1|AF360339_1 unknown protein [Arabidopsis thaliana]
          Length = 585

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 315/404 (77%), Positives = 359/404 (88%), Gaps = 1/404 (0%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +LSGLSNLTSLSFRRN AITAQGM+A + L+NL KLDLE+C  I GGLV+L+ L KLESL
Sbjct: 182 HLSGLSNLTSLSFRRNAAITAQGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESL 241

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAA 122
           NIKWCNCITD+DM+PLS LTNL+ LQI CSK+TD GI+YLKGL KL LLNLEGC  VTAA
Sbjct: 242 NIKWCNCITDADMEPLSVLTNLRRLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAA 301

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CLD+L+AL  L YLNLNRC  SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LE
Sbjct: 302 CLDTLTALAGLMYLNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLE 361

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC IGDEGLV+L+G+  LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D 
Sbjct: 362 SLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDS 421

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            LRKL+GL+SL++LNLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG  +LRN K L+
Sbjct: 422 GLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQ 481

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLEICGGGLTD GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S
Sbjct: 482 SLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSS 541

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           +GLRHLKPLKNLRSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 542 SGLRHLKPLKNLRSLTLESCKLSANDIRKLQATDLPNLVNFRPE 585



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/269 (34%), Positives = 136/269 (50%), Gaps = 29/269 (10%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL 210
           S+  SL  ++   ++ITD  LV LKG TNLESLN + C  I + GLV+L+GL NL  L  
Sbjct: 135 SQSTSLLSVDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSF 194

Query: 211 -SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGL 268
             +  + + G+R LS L NL+ ++L      DG L  L  L+ L+SLN+     ITD  +
Sbjct: 195 RRNAAITAQGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADM 254

Query: 269 AALTSLTGLTHLDLFGARITDSGAAY-------------------------LRNFKNLRS 303
             L+ LT L  L +  ++ITD G +Y                         L     L  
Sbjct: 255 EPLSVLTNLRRLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMY 314

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           L +     +D+G +   DL +L +LNL  N N+T+  L  + GLT L SLN+ + RI   
Sbjct: 315 LNLNRCNFSDSGCEKFSDLINLKILNLGMN-NITNSCLVHLKGLTKLESLNLDSCRIGDE 373

Query: 364 GLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           GL HL  +  L+SL L   +V +N ++ L
Sbjct: 374 GLVHLSGMLELKSLELSDTEVGSNGLRHL 402


>gi|116310796|emb|CAH67587.1| OSIGBa0112M24.4 [Oryza sativa Indica Group]
 gi|218195159|gb|EEC77586.1| hypothetical protein OsI_16540 [Oryza sativa Indica Group]
          Length = 581

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/404 (70%), Positives = 340/404 (84%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + LSGLSN+TSLSF++ +A+TA+G KAFA ++NL  LDLERC +IHGGLV+LKGL KLE 
Sbjct: 178 KTLSGLSNVTSLSFKKCSAVTAEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEK 237

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+++CN ITDSDMK LS LTNL+ LQ+SC K++D G++YL+GL KL  LNLEGC VTAA
Sbjct: 238 LNLRYCNGITDSDMKHLSDLTNLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAA 297

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL+ +S L SL  LNL+RC + D+GCE    +  LKVLNLGFN ITD CLVHLK L NLE
Sbjct: 298 CLEVISGLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLE 357

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            LNLDSC IGDEGL +L GL  L+ LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D 
Sbjct: 358 CLNLDSCKIGDEGLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDI 417

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L+K++GL+SL+SLNLD RQITD GLAALT LTGLTHLDLFGARITD+G   L+ FKNL+
Sbjct: 418 GLKKISGLNSLRSLNLDNRQITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQ 477

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLE+CGG +TDAGVK+IKDL +LTLLNLSQN NLTDK+LELISGLT LVSLNVSNSR+++
Sbjct: 478 SLEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISGLTALVSLNVSNSRVSN 537

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           +GL HLKPL+NLRSL+LESCKVTA +IK+LQ   LPNLVS RPE
Sbjct: 538 SGLHHLKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSVRPE 581


>gi|115459280|ref|NP_001053240.1| Os04g0503500 [Oryza sativa Japonica Group]
 gi|113564811|dbj|BAF15154.1| Os04g0503500 [Oryza sativa Japonica Group]
 gi|215678755|dbj|BAG95192.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215708842|dbj|BAG94111.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629150|gb|EEE61282.1| hypothetical protein OsJ_15365 [Oryza sativa Japonica Group]
          Length = 581

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 284/404 (70%), Positives = 339/404 (83%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + LSGLSN+TSLSF++ +A+TA+G KAFA ++NL  LDLERC +IHGGLV+LKGL KLE 
Sbjct: 178 KTLSGLSNVTSLSFKKCSAVTAEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEK 237

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+++CN ITDSDMK LS LTNL+ LQ+SC K++D G++YL+GL KL  LNLEGC VTAA
Sbjct: 238 LNLRYCNGITDSDMKHLSDLTNLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAA 297

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL+ +S L SL  LNL+RC + D+GCE    +  LKVLNLGFN ITD CLVHLK L NLE
Sbjct: 298 CLEVISGLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLE 357

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            LNLDSC IGDEGL +L GL  L+ LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D 
Sbjct: 358 CLNLDSCKIGDEGLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDI 417

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L+K++GL+SL+SLNLD RQITD GLAALT LTGLTHLDLFGARITD+G   L+ FKNL+
Sbjct: 418 GLKKISGLNSLRSLNLDNRQITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQ 477

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLE+CGG +TDAGVK+IKDL +LTLLNLSQN NLTDK+LELIS LT LVSLNVSNSR+++
Sbjct: 478 SLEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSN 537

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           +GL HLKPL+NLRSL+LESCKVTA +IK+LQ   LPNLVS RPE
Sbjct: 538 SGLHHLKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSVRPE 581


>gi|255583092|ref|XP_002532313.1| protein binding protein, putative [Ricinus communis]
 gi|223527982|gb|EEF30065.1| protein binding protein, putative [Ricinus communis]
          Length = 597

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 299/398 (75%), Positives = 342/398 (85%), Gaps = 1/398 (0%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +++SGL NLTSLSF+R NA+TA+GM+ F+ L+NL KLDLERC +IHGGL +LKGL+KLES
Sbjct: 174 KHISGLKNLTSLSFKRCNAVTAEGMRGFSSLVNLEKLDLERCPQIHGGLAHLKGLLKLES 233

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LNI+ C CI D DMK LS +TNLK LQIS S VTD G++YLKGLQKL +LNLEGC VT A
Sbjct: 234 LNIRCCKCIEDMDMKALSDITNLKELQISNSNVTDLGVSYLKGLQKLIMLNLEGCNVTTA 293

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CLDS+SAL +L YLNLNRC LSDDGC KFS + +LKVL+LGFN ITD CLVHLKGL NLE
Sbjct: 294 CLDSISALVALTYLNLNRCNLSDDGCSKFSGLKNLKVLSLGFNNITDACLVHLKGLMNLE 353

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           +LNLDSC IGDEGL NLTGL  LK LELSDT+VGS+GLRHLSGLT LE++NLSFT ++D 
Sbjct: 354 NLNLDSCNIGDEGLANLTGL-PLKSLELSDTEVGSNGLRHLSGLTLLENLNLSFTLVTDS 412

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            LR+L+GL SL+SLNLDARQITD GLAALT LTGL HLDLFGARI+DSG  YL+ FKNL+
Sbjct: 413 GLRRLSGLLSLRSLNLDARQITDAGLAALTRLTGLIHLDLFGARISDSGTKYLQYFKNLQ 472

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLEICGGGLTD GVK+IKDL  LT+LNLSQN NLTDKTLELISGLT LVSLNVSNS IT+
Sbjct: 473 SLEICGGGLTDDGVKNIKDLVHLTVLNLSQNSNLTDKTLELISGLTELVSLNVSNSLITN 532

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
            GL +LKPLKNLRSL+LESCKVTA++I +LQS  LPNL
Sbjct: 533 EGLHYLKPLKNLRSLSLESCKVTASEISKLQSTALPNL 570



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 31/161 (19%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
             L  L GL+ L+    +    I+DS  K L    NL+SL+I    +TD G+  +K L  
Sbjct: 439 AALTRLTGLIHLDLFGAR----ISDSGTKYLQYFKNLQSLEICGGGLTDDGVKNIKDLVH 494

Query: 109 LTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
           LT+LNL +   +T   L+ +S L  L  LN++                         + I
Sbjct: 495 LTVLNLSQNSNLTDKTLELISGLTELVSLNVSN------------------------SLI 530

Query: 168 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNL--TGLCNLK 206
           T+E L +LK L NL SL+L+SC +    +  L  T L NLK
Sbjct: 531 TNEGLHYLKPLKNLRSLSLESCKVTASEISKLQSTALPNLK 571


>gi|356548547|ref|XP_003542662.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
          Length = 578

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 283/404 (70%), Positives = 336/404 (83%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +++SGLSNLTSLS R+++++   GM+AF+ L NL KLDLERC+ IHGG V+LKGL KLE 
Sbjct: 175 KHISGLSNLTSLSIRKSSSVKPDGMRAFSNLFNLEKLDLERCSEIHGGFVHLKGLKKLEY 234

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LNI  C C+TDSD+K +S L NLK LQIS S +TD GI YL+GL+KLT LN+EGC +TAA
Sbjct: 235 LNIGCCKCVTDSDIKSISELINLKELQISNSSITDIGITYLRGLEKLTTLNVEGCNITAA 294

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL+ + AL SL  LNLNRC LSDDG EK S + +LK L+L FN ITD CLVHLK LTNLE
Sbjct: 295 CLEFIHALTSLACLNLNRCGLSDDGFEKISGLKNLKRLSLAFNRITDACLVHLKDLTNLE 354

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            LNLDSC IGD GL NLTGL  LK L LSDT +G+SGLR++SGL  LE +N+SFT ++D 
Sbjct: 355 YLNLDSCRIGDGGLANLTGLTLLKSLVLSDTDIGNSGLRYISGLKKLEDLNVSFTTVTDN 414

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L++L+GL+ LKSLNLDARQITD GLA LTSL+GL  LDLFGARI+D+G  +LR+FKNL+
Sbjct: 415 GLKRLSGLTQLKSLNLDARQITDAGLANLTSLSGLITLDLFGARISDNGTTFLRSFKNLQ 474

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLEICGGGLTDAGVK+I+++ SLT LNLSQNCNLTDKTLELISG+T L SLNVSNSRIT+
Sbjct: 475 SLEICGGGLTDAGVKNIREIVSLTQLNLSQNCNLTDKTLELISGMTALRSLNVSNSRITN 534

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
            GLRHLKPLKNLR+LTLESCKVTA+ IK+LQS DLPNL+SFRPE
Sbjct: 535 EGLRHLKPLKNLRTLTLESCKVTASGIKKLQSTDLPNLISFRPE 578



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNS 358
           +L S+++ G  +TD G++ +KD SSL  L LS     ++  L+ ISGL+ L SL++  +S
Sbjct: 133 SLLSVDVAGSQVTDDGLRLLKDCSSLQALTLSYCDQFSEYGLKHISGLSNLTSLSIRKSS 192

Query: 359 RITSAGLRHLKPLKNLRSLTLESC 382
            +   G+R    L NL  L LE C
Sbjct: 193 SVKPDGMRAFSNLFNLEKLDLERC 216


>gi|125540271|gb|EAY86666.1| hypothetical protein OsI_08050 [Oryza sativa Indica Group]
          Length = 582

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 282/402 (70%), Positives = 340/402 (84%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LSGLSNLTSLSF+ ++ ITA+ M+AFA L+NLV LDLERC +IHGGLV+LKGL  LESLN
Sbjct: 181 LSGLSNLTSLSFKSSDGITAEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLN 240

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +++CN I DSD+K LS LTNLK LQ++C ++TD G++YL+GL KLT LNLEGCPVTAACL
Sbjct: 241 MRYCNNIADSDIKYLSDLTNLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACL 300

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           +++S L SL  LNL+RC +  +GCE F  +  LKVLNLGFN ITD+CL HLK L NLESL
Sbjct: 301 EAISGLASLVVLNLSRCGIYGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESL 360

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           NLDSC +GDEGL++L GL  LK LELSDT+VGSSGL+HLSGL NLESINLSFT ++D  +
Sbjct: 361 NLDSCKVGDEGLLHLRGLMLLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGM 420

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           +K++ L+SLKS+NLD RQITD GLAALTSLTGLTHLDLFGARITD G +  R FKNL SL
Sbjct: 421 KKISALNSLKSVNLDNRQITDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESL 480

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           E+CGG +TDAGVK+IKDL +L  LNLSQN NLTDKTLELISGLT LVSLNVSN+RI++AG
Sbjct: 481 EVCGGLITDAGVKNIKDLKALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRISNAG 540

Query: 365 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           LRHLK L+NLRSL+L+SC+VT +++K+LQ+  LPNL+S RPE
Sbjct: 541 LRHLKDLQNLRSLSLDSCRVTTSEVKKLQATVLPNLISVRPE 582



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 6/127 (4%)

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSL--EICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           L  +D+  + ITDSG   LR+  N++SL    C   +++ G+  +  LS+LT L+   + 
Sbjct: 138 LLSVDISCSEITDSGLYLLRDCPNMQSLACNYCDM-ISEHGLGILSGLSNLTSLSFKSSD 196

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-DIKRLQ 393
            +T + +E  + L  LV+L++        GL HLK L+NL SL +  C   A+ DIK L 
Sbjct: 197 GITAEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLS 256

Query: 394 SRDLPNL 400
             DL NL
Sbjct: 257 --DLTNL 261


>gi|115447277|ref|NP_001047418.1| Os02g0613200 [Oryza sativa Japonica Group]
 gi|47497632|dbj|BAD19701.1| leucine-rich repeat-like protein [Oryza sativa Japonica Group]
 gi|113536949|dbj|BAF09332.1| Os02g0613200 [Oryza sativa Japonica Group]
 gi|125582867|gb|EAZ23798.1| hypothetical protein OsJ_07510 [Oryza sativa Japonica Group]
 gi|215704406|dbj|BAG93840.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 582

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 281/402 (69%), Positives = 340/402 (84%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LSGLSNLTSLSF+ ++ ITA+ M+AFA L+NLV LDLERC +IHGGLV+LKGL  LESLN
Sbjct: 181 LSGLSNLTSLSFKSSDGITAEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLN 240

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +++CN I DSD+K LS LTNLK LQ++C ++TD G++YL+GL KLT LNLEGCPVTAACL
Sbjct: 241 MRYCNNIADSDIKYLSDLTNLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACL 300

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           +++S L SL  LNL+RC +  +GCE F  +  LKVLNLGFN ITD+CL HLK L NLESL
Sbjct: 301 EAISGLASLVVLNLSRCGIYGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESL 360

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           NLDSC +GDEGL++L GL  LK LELSDT+VGSSGL+HLSGL NLESINLSFT ++D  +
Sbjct: 361 NLDSCKVGDEGLLHLRGLMLLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGM 420

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           +K++ L+SLKS+NLD RQITD GLAALTSLTGLTHLDLFGARITD G +  R FKNL SL
Sbjct: 421 KKISALNSLKSVNLDNRQITDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESL 480

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           E+CGG +TDAGVK+IKDL +L  LNLSQN NLTDKTLELISGLT LVSLNVSN+R+++AG
Sbjct: 481 EVCGGLITDAGVKNIKDLKALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNAG 540

Query: 365 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           LRHLK L+NLRSL+L+SC+VT +++K+LQ+  LPNL+S RPE
Sbjct: 541 LRHLKDLQNLRSLSLDSCRVTTSEVKKLQATVLPNLISVRPE 582



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 6/127 (4%)

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSL--EICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           L  +D+  + ITDSG   LR+  N++SL    C   +++ G+  +  LS+LT L+   + 
Sbjct: 138 LLSVDISCSEITDSGLYLLRDCPNMQSLACNYCDM-ISEHGLGILSGLSNLTSLSFKSSD 196

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-DIKRLQ 393
            +T + +E  + L  LV+L++        GL HLK L+NL SL +  C   A+ DIK L 
Sbjct: 197 GITAEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLS 256

Query: 394 SRDLPNL 400
             DL NL
Sbjct: 257 --DLTNL 261


>gi|356562920|ref|XP_003549716.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
          Length = 580

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 282/404 (69%), Positives = 334/404 (82%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +++SGLSNLTSLS R+++ +   GM+AF+ L NL KLDLERC+ IHGG V+LKGL KLE 
Sbjct: 177 KHISGLSNLTSLSIRKSSTVKPDGMRAFSNLFNLEKLDLERCSDIHGGFVHLKGLKKLEY 236

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LNI  C C+ DSDMK +S L NLK LQIS S +TD GI YL+GL+ LT LN+EGC +TAA
Sbjct: 237 LNIGCCKCVMDSDMKSISELINLKELQISNSSITDIGITYLRGLKMLTTLNVEGCNITAA 296

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL+ + AL SL  LNLNRC LSDDG EK S + +LK L+L FN ITD CLVHLKGLTNLE
Sbjct: 297 CLEFIHALASLACLNLNRCGLSDDGFEKISGLKNLKRLSLAFNRITDACLVHLKGLTNLE 356

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            LNLD C IGD+GL NLTGL  LK L LSDT +G+SGLRH+SGL  LE +NLSFT ++D 
Sbjct: 357 YLNLDYCRIGDDGLANLTGLTLLKSLVLSDTDIGNSGLRHISGLKKLEDLNLSFTTVTDH 416

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L++L+GL+ LKSLNLDARQITD GLA LTSL+GL  LDLFGARI+D+G  +LR+FK L+
Sbjct: 417 GLKRLSGLTQLKSLNLDARQITDAGLANLTSLSGLIALDLFGARISDNGTTFLRSFKILQ 476

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLEICGGGLTDAGVK+I+++ SLT LNLSQNCNLTDKTLELISG+T L SLNVSNSRIT+
Sbjct: 477 SLEICGGGLTDAGVKNIREIVSLTQLNLSQNCNLTDKTLELISGMTALRSLNVSNSRITN 536

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
            GLR+LKPLKNLR+LTLESCKVTA++IK+LQS DLPNL+SFRPE
Sbjct: 537 EGLRYLKPLKNLRTLTLESCKVTASEIKKLQSTDLPNLISFRPE 580



 Score = 44.7 bits (104), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNS 358
           +L S+++ G  +TD G++ +KD S+L  L L+     ++  L+ ISGL+ L SL++  +S
Sbjct: 135 SLLSVDVSGSQVTDNGLRFLKDCSNLQALTLNFCDQFSEYGLKHISGLSNLTSLSIRKSS 194

Query: 359 RITSAGLRHLKPLKNLRSLTLESC 382
            +   G+R    L NL  L LE C
Sbjct: 195 TVKPDGMRAFSNLFNLEKLDLERC 218


>gi|357164542|ref|XP_003580088.1| PREDICTED: insulin-like growth factor-binding protein complex acid
           labile subunit-like [Brachypodium distachyon]
          Length = 580

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 285/404 (70%), Positives = 341/404 (84%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + LSGLSNLTSLS ++  A+TA+G KAFA L+NLV LDLERC +IHGGLV+LKGL KLE+
Sbjct: 177 KTLSGLSNLTSLSLKKCAAVTAEGAKAFADLVNLVNLDLERCPKIHGGLVHLKGLRKLET 236

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+++CNCITDSDMK LS LTNL+ LQ+SC K++D G++YLKGL KL  LNLEGC VTAA
Sbjct: 237 LNMRYCNCITDSDMKYLSDLTNLRELQLSCCKISDIGVSYLKGLSKLAHLNLEGCAVTAA 296

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL+++S L SL  LNLNRC + D+GCE    +  LKVLNLGFN ITD CLVHLK L +LE
Sbjct: 297 CLEAISGLASLILLNLNRCGIYDEGCENLEGLVKLKVLNLGFNHITDACLVHLKELVSLE 356

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            LNLDSC IGDEGL++L GL  L+ LELSDT+VGS+GLRHLSGL NL+S+NLSFT ++D 
Sbjct: 357 CLNLDSCKIGDEGLLHLKGLLQLRSLELSDTEVGSNGLRHLSGLRNLQSMNLSFTLVTDI 416

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L+K+AGL+SLKSLNLD RQITD GLAAL  LTGLTHLDLFGARITDSG   LR FK L+
Sbjct: 417 GLKKVAGLNSLKSLNLDNRQITDNGLAALAGLTGLTHLDLFGARITDSGTNCLRYFKELQ 476

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLE+CGG +TDAGVK+IKDL +LTLLNLSQN NLTD+TLELISGLT LVSLN+SN+R+++
Sbjct: 477 SLELCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDRTLELISGLTALVSLNLSNTRVSN 536

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           AGL HLK L+NLRSL+L+SCKVTA++IK++Q   LPNL+S RPE
Sbjct: 537 AGLHHLKLLQNLRSLSLDSCKVTASEIKKIQLASLPNLISVRPE 580


>gi|357478391|ref|XP_003609481.1| F-box/LRR-repeat protein [Medicago truncatula]
 gi|355510536|gb|AES91678.1| F-box/LRR-repeat protein [Medicago truncatula]
          Length = 576

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 287/404 (71%), Positives = 338/404 (83%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           ++LSGLSNLTSLS R++ A+T  GM+AF+ L+NL KLDLERC+ IHGG V+ KGL KLES
Sbjct: 173 KHLSGLSNLTSLSIRKSCAVTPDGMRAFSNLVNLEKLDLERCSDIHGGFVHFKGLKKLES 232

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LNI  C C+TDSDMK +SG  NLK LQIS S +TD GI+YL+GLQKL+ LN+EGC +TAA
Sbjct: 233 LNIGCCKCVTDSDMKAISGFINLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAA 292

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           C + +SAL +L  LNLNRC LSDDG EKFS +  LK L+L FN+ITD CLVHLKGLT LE
Sbjct: 293 CFEYISALAALACLNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLE 352

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            LNLDSC IGDEGLVNLTGL  LK L LSDT+VG+SG+R++SGL  LE +NLSFT ++D 
Sbjct: 353 YLNLDSCQIGDEGLVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDN 412

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L++L GL++LKSLNLDARQITD GLA LTSL+GL  LDLFGARITDSG  YLR+FKNL+
Sbjct: 413 GLKRLLGLTNLKSLNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQ 472

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLEICGG LTDAGVK+I+++ SLT LNLSQNC LTDKTLELISG+T L SLNVSNSR+T+
Sbjct: 473 SLEICGGLLTDAGVKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTN 532

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
            GLR+LKPLKNLR+L+LESCKV A DIK+L S DLPNL+SFRPE
Sbjct: 533 EGLRYLKPLKNLRTLSLESCKVNAADIKKLHSTDLPNLISFRPE 576



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           L  +D+ G+ +TD G   L++  NL++L +  C    ++ G+KH+  LS+LT L++ ++C
Sbjct: 132 LLAVDVSGSNVTDHGLRLLKDCLNLQALTLNYCDQ-FSEHGLKHLSGLSNLTSLSIRKSC 190

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRL 392
            +T   +   S L  L  L++        G  H K LK L SL +  CK VT +D+K +
Sbjct: 191 AVTPDGMRAFSNLVNLEKLDLERCSDIHGGFVHFKGLKKLESLNIGCCKCVTDSDMKAI 249



 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS- 358
           +L ++++ G  +TD G++ +KD  +L  L L+     ++  L+ +SGL+ L SL++  S 
Sbjct: 131 SLLAVDVSGSNVTDHGLRLLKDCLNLQALTLNYCDQFSEHGLKHLSGLSNLTSLSIRKSC 190

Query: 359 RITSAGLRHLKPLKNLRSLTLESC 382
            +T  G+R    L NL  L LE C
Sbjct: 191 AVTPDGMRAFSNLVNLEKLDLERC 214


>gi|326497793|dbj|BAJ98524.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 583

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 280/402 (69%), Positives = 336/402 (83%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LSG SNLTSLSF+R++ +TA+GM  FA L+NLV LDLE C +IHGGLV++KGL KLESLN
Sbjct: 182 LSGFSNLTSLSFKRSDGVTAEGMSVFADLVNLVNLDLECCLKIHGGLVHMKGLRKLESLN 241

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +++CN ITDSD+K LS LTNLK LQ+S  ++TD G++YL GL KLT LNLE CPVTAACL
Sbjct: 242 MRYCNYITDSDIKYLSDLTNLKELQLSSCRITDLGVSYLTGLSKLTHLNLESCPVTAACL 301

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           +++S L SL  LNLNRC + D+GCE F  +  LKVLNLGFN ITD CLVHLKGL NLESL
Sbjct: 302 EAISGLASLMLLNLNRCGIYDEGCESFEDLKKLKVLNLGFNHITDACLVHLKGLINLESL 361

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           NLDSC IGDEGL++L GL  LK LELSDT +GS+GL+HLSGL NL SINLSFT ++D  +
Sbjct: 362 NLDSCKIGDEGLLHLKGLVLLKSLELSDTAIGSNGLQHLSGLRNLHSINLSFTLVTDTGM 421

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           +K++ L+SLKS+NLD R ITD GLAAL  LTGLTHLDLFGAR+TD G ++LR FKNL SL
Sbjct: 422 KKISTLNSLKSVNLDNRLITDVGLAALIGLTGLTHLDLFGARVTDHGTSFLRYFKNLESL 481

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           E+CGG +TDAGVK+IKDL +LTLLNLSQN  LTDKTLELISGLT LVSLNVSNSR+++AG
Sbjct: 482 EVCGGSITDAGVKNIKDLKALTLLNLSQNAKLTDKTLELISGLTALVSLNVSNSRVSNAG 541

Query: 365 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
            RHLK L+NLRSLTL+SC+VT N++K+L++  LPNL+S RPE
Sbjct: 542 FRHLKALQNLRSLTLDSCRVTVNEMKKLRATALPNLISVRPE 583


>gi|357150116|ref|XP_003575347.1| PREDICTED: F-box/LRR-repeat protein 14-like [Brachypodium
           distachyon]
          Length = 582

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 280/402 (69%), Positives = 336/402 (83%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LSG SNLTSLSF+R++ +TA+GM+ FA L+NLV LDLERC +IHGGLV+LKGL KLES+N
Sbjct: 181 LSGFSNLTSLSFKRSDGVTAEGMRVFANLVNLVNLDLERCLKIHGGLVHLKGLRKLESIN 240

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +++CN ITDSD+K LS LTNLK LQ+S  ++TD G++YL+GL KL  LNLE CPVTAACL
Sbjct: 241 MRYCNNITDSDIKYLSDLTNLKELQLSSCRITDLGVSYLRGLSKLIRLNLESCPVTAACL 300

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             +S L SL  LNLNRC + D+GCE F  +  LKVLNLGFN ITD CLVHLK L NLE L
Sbjct: 301 VDISGLASLMLLNLNRCGIYDEGCESFKDLKKLKVLNLGFNYITDACLVHLKELINLEFL 360

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           NLDSC +GD GL++L GL  LK LELSDT+VGS+GLRHLSGL  L+ I+LSFT ++D  +
Sbjct: 361 NLDSCKVGDAGLLHLKGLVLLKSLELSDTEVGSNGLRHLSGLRTLQRIDLSFTLVTDTGM 420

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           +K++ LSSLKS+NLD+R ITD GLAALT LTGLTHLDLFGARITD+GA+  R FKNL SL
Sbjct: 421 KKISALSSLKSVNLDSRLITDVGLAALTGLTGLTHLDLFGARITDNGASCFRYFKNLESL 480

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           E CGG +TD GVK+IK+L +LTLLNLSQN NLTDKTLELISGLT LVSLNVSNSR+++AG
Sbjct: 481 EACGGSITDVGVKNIKELKALTLLNLSQNANLTDKTLELISGLTALVSLNVSNSRVSNAG 540

Query: 365 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           LRHL  L+NLRSLTL+SC+VTAN+I++LQ+  LPNL+SFRPE
Sbjct: 541 LRHLNALQNLRSLTLDSCRVTANEIRKLQATALPNLISFRPE 582


>gi|255553315|ref|XP_002517700.1| F-box/LRR-repeat protein, putative [Ricinus communis]
 gi|223543332|gb|EEF44864.1| F-box/LRR-repeat protein, putative [Ricinus communis]
          Length = 529

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 311/386 (80%), Positives = 339/386 (87%), Gaps = 1/386 (0%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 80
           +T  G+       NL  L+   C +I   GL N+  L+KLESLNIKWCNCITD+DMK LS
Sbjct: 144 VTDSGLAYLKDCTNLQALNFNYCDQISDPGLSNISDLLKLESLNIKWCNCITDADMKYLS 203

Query: 81  GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
           GL  LK LQISCSKVTD GI+YLKGL KL LLNLEGCPVT ACLDSLSAL +L YLNLNR
Sbjct: 204 GLVKLKGLQISCSKVTDVGISYLKGLHKLNLLNLEGCPVTVACLDSLSALAALLYLNLNR 263

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
           C LSDDGCE FSK+G LKVLNLGFN+I+D CLVHLKGLTNLESLNLDSC I DEGL NLT
Sbjct: 264 CHLSDDGCEAFSKLGRLKVLNLGFNDISDACLVHLKGLTNLESLNLDSCRIDDEGLANLT 323

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
           GL +LKCL LSDT+VGSSGLRHLSGLTNLESINLSFT I+DG +RKL+GLSSLKSLNLDA
Sbjct: 324 GLRHLKCLVLSDTEVGSSGLRHLSGLTNLESINLSFTMITDGGIRKLSGLSSLKSLNLDA 383

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
           RQITD+GLAALT+LTGLTHLDLFGARITDSG  YLRNFKNL+SLEICGGGLTDAG+++IK
Sbjct: 384 RQITDSGLAALTNLTGLTHLDLFGARITDSGTHYLRNFKNLQSLEICGGGLTDAGIRNIK 443

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
           DLSSL+LLNLSQNCNLTDK+LELISGLTGLVSLNVSNSRITSAGL+HLKPLKNL+SLTLE
Sbjct: 444 DLSSLSLLNLSQNCNLTDKSLELISGLTGLVSLNVSNSRITSAGLQHLKPLKNLKSLTLE 503

Query: 381 SCKVTANDIKRLQSRDLPNLVSFRPE 406
           SCKVTA DIK+LQS DLP LVSFRPE
Sbjct: 504 SCKVTATDIKKLQSTDLPQLVSFRPE 529



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 166/343 (48%), Gaps = 28/343 (8%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLES 62
           N+S L  L SL+ +  N IT   MK  +GL+ L  L +  C+++   G+  LKGL KL  
Sbjct: 176 NISDLLKLESLNIKWCNCITDADMKYLSGLVKLKGLQIS-CSKVTDVGISYLKGLHKLNL 234

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN++ C           +    L      C  ++D G      L +L +LNL    ++ A
Sbjct: 235 LNLEGCPVTVACLDSLSALAALLYLNLNRC-HLSDDGCEAFSKLGRLKVLNLGFNDISDA 293

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL  L  L +L  LNL+ C++ D+G    + +  LK L L   E+    L HL GLTNLE
Sbjct: 294 CLVHLKGLTNLESLNLDSCRIDDEGLANLTGLRHLKCLVLSDTEVGSSGLRHLSGLTNLE 353

Query: 183 SL------------------------NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           S+                        NLD+  I D GL  LT L  L  L+L   ++  S
Sbjct: 354 SINLSFTMITDGGIRKLSGLSSLKSLNLDARQITDSGLAALTNLTGLTHLDLFGARITDS 413

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGL 277
           G  +L    NL+S+ +   G++D  +R +  LSSL  LNL     +TD  L  ++ LTGL
Sbjct: 414 GTHYLRNFKNLQSLEICGGGLTDAGIRNIKDLSSLSLLNLSQNCNLTDKSLELISGLTGL 473

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
             L++  +RIT +G  +L+  KNL+SL +    +T   +K ++
Sbjct: 474 VSLNVSNSRITSAGLQHLKPLKNLKSLTLESCKVTATDIKKLQ 516



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 25/111 (22%)

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLS------------------------QNCN- 335
           L S+++ G  +TD+G+ ++KD ++L  LN +                        + CN 
Sbjct: 134 LLSVDLSGSDVTDSGLAYLKDCTNLQALNFNYCDQISDPGLSNISDLLKLESLNIKWCNC 193

Query: 336 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
           +TD  ++ +SGL  L  L +S S++T  G+ +LK L  L  L LE C VT 
Sbjct: 194 ITDADMKYLSGLVKLKGLQISCSKVTDVGISYLKGLHKLNLLNLEGCPVTV 244


>gi|242076388|ref|XP_002448130.1| hypothetical protein SORBIDRAFT_06g021780 [Sorghum bicolor]
 gi|241939313|gb|EES12458.1| hypothetical protein SORBIDRAFT_06g021780 [Sorghum bicolor]
          Length = 581

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 282/404 (69%), Positives = 336/404 (83%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + LSG SNLTSLS ++  A+TA+G KAFA L+NLV LDLERC +IHGGL++LKGL KLE 
Sbjct: 178 KTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKIHGGLIHLKGLKKLEK 237

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+++CNCITDSDMK LS LTNL+ LQ+S  K++D G++YL+GL KL  LNLEGC VTAA
Sbjct: 238 LNMRYCNCITDSDMKYLSDLTNLRELQLSSCKISDFGVSYLRGLHKLGHLNLEGCSVTAA 297

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL+ +S L SL  LNL+RC + D+GCE    +  LK LNLGFN IT  CL+HLK L +LE
Sbjct: 298 CLEVISELASLVLLNLSRCGICDEGCENLEGLTKLKALNLGFNHITGACLIHLKDLISLE 357

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            LNLDSC IGDEGL +L GL  LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D 
Sbjct: 358 CLNLDSCKIGDEGLFHLKGLIQLKSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDI 417

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L+K++GLSSLKSLNLD RQITDTGLA+LT+LTGLTHLDLFGARITDSG    R FKNL+
Sbjct: 418 GLKKISGLSSLKSLNLDNRQITDTGLASLTNLTGLTHLDLFGARITDSGMNCFRFFKNLQ 477

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLE+CGG +TDAGVK+IKDL +LTLLNLSQN NLTDKTLELISGLT LVSLNVSNSR+++
Sbjct: 478 SLEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKTLELISGLTALVSLNVSNSRVSN 537

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           +GL HLKPL NLRSL+LESC+VTA++I +L+   LPNL+S RPE
Sbjct: 538 SGLHHLKPLLNLRSLSLESCRVTASEIDKLRLVALPNLISVRPE 581


>gi|226501144|ref|NP_001141453.1| uncharacterized protein LOC100273563 [Zea mays]
 gi|194704638|gb|ACF86403.1| unknown [Zea mays]
 gi|414586493|tpg|DAA37064.1| TPA: regulatory subunit [Zea mays]
          Length = 581

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/404 (68%), Positives = 335/404 (82%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + LSG SNLTSLS ++  A+TA+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE 
Sbjct: 178 KTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+++CN ITDSDMK LS LTNL+ LQ+S  K++  G++YL+GL KL  LNLEGC VTA 
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAV 297

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL+ +S L SL  LNL+RC + D+GCE    +  LK L+LGFN+ITD CL+HLK L NLE
Sbjct: 298 CLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLE 357

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            LNLDSC IGDEGL +L GL  LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D 
Sbjct: 358 CLNLDSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDI 417

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L+K++GLSSLKSLNLD RQITDTGLA+LT LTGLTHLDLFGARITDSG +  R FKN++
Sbjct: 418 GLKKISGLSSLKSLNLDNRQITDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQ 477

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLE+CGG +TDAGVK+IKDL +LTLLNLSQN  LTDKTLELISGLT LVSLNVSNSR+++
Sbjct: 478 SLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSN 537

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           +GL HLKPL+NLRSL+LESC+VTA+++ +L+   LPNL+S RPE
Sbjct: 538 SGLHHLKPLQNLRSLSLESCRVTASEMDKLRLVALPNLISVRPE 581


>gi|195647464|gb|ACG43200.1| regulatory subunit [Zea mays]
          Length = 581

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/404 (68%), Positives = 334/404 (82%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + LSG SNLTSLS ++  A+TA+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE 
Sbjct: 178 KTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+++CN ITDSDMK LS LTNL+ LQ+S  K++  G++YL+GL KL  LNLEGC VTA 
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAV 297

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL+ +S L SL  LNL+RC + D+GCE    +  LK L+LGFN+ITD CL+HLK L NLE
Sbjct: 298 CLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLE 357

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            LNLDSC IGDEGL +L GL  LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D 
Sbjct: 358 CLNLDSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDI 417

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L+K++GLSSLKSLNLD RQITDTGLA+LT LTGLTHLDLFGARITDSG +  R FKN++
Sbjct: 418 GLKKISGLSSLKSLNLDNRQITDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQ 477

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLE+CGG +TDAGVK+IKDL +LTLLNLSQN  LTDKTLELISGLT LVSLNVSNSR+++
Sbjct: 478 SLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSN 537

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
            GL HLKPL+NLRSL+LESC+VTA+++ +L+   LPNL+S RPE
Sbjct: 538 LGLHHLKPLQNLRSLSLESCRVTASEMDKLRLVALPNLISVRPE 581


>gi|8927653|gb|AAF82144.1|AC034256_8 Contains similarity to F-box protein FBL2 from Homo sapiens
           gb|AF176518 and contains multiple Leucine Rich PF|00560
           repeats. ESTs gb|Z34572, gb|Z34571, gb|AI100681,
           gb|AI100675, gb|AA395320, gb|AI100674, gb|AA651378,
           gb|AA007067, gb|T46145, gb|T22090, gb|AI995016,
           gb|H36884, gb|AI995066, gb|H37061, gb|T43537 come from
           this gene [Arabidopsis thaliana]
          Length = 568

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 297/411 (72%), Positives = 338/411 (82%), Gaps = 32/411 (7%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +LSGLSNLTSLSFRRN AITAQGM+A + L+NL KLDLE+C  I GGLV+L+ L KLESL
Sbjct: 182 HLSGLSNLTSLSFRRNAAITAQGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESL 241

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAA 122
           NIKWCNCITD+DM+P                        L GL KL LLNLEGC  VTAA
Sbjct: 242 NIKWCNCITDADMEP------------------------LSGLNKLNLLNLEGCRHVTAA 277

Query: 123 CLDSLS-------ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
           CLD+L+       AL  L YLNLNRC  SD GCEKFS + +LK+LNLG N IT+ CLVHL
Sbjct: 278 CLDTLTGLYRHPHALAGLMYLNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHL 337

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
           KGLT LESLNLDSC IGDEGLV+L+G+  LK LELSDT+VGS+GLRHLSGL+NLESINLS
Sbjct: 338 KGLTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLS 397

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
           FT ++D  LRKL+GL+SL++LNLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG  +L
Sbjct: 398 FTVVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHL 457

Query: 296 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
           RN K L+SLEICGGGLTD GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNV
Sbjct: 458 RNLKKLQSLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNV 517

Query: 356 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           SNSR++S+GLRHLKPLKNLRSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 518 SNSRVSSSGLRHLKPLKNLRSLTLESCKLSANDIRKLQATDLPNLVNFRPE 568



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/276 (34%), Positives = 142/276 (51%), Gaps = 36/276 (13%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL 210
           S+  SL  ++   ++ITD  LV LKG TNLESLN + C  I + GLV+L+GL NL  L  
Sbjct: 135 SQSTSLLSVDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSF 194

Query: 211 -SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-------DA-- 260
             +  + + G+R LS L NL+ ++L      DG L  L  L+ L+SLN+       DA  
Sbjct: 195 RRNAAITAQGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADM 254

Query: 261 -----------------RQITDTGLAALT-------SLTGLTHLDLFGARITDSGAAYLR 296
                            R +T   L  LT       +L GL +L+L     +DSG     
Sbjct: 255 EPLSGLNKLNLLNLEGCRHVTAACLDTLTGLYRHPHALAGLMYLNLNRCNFSDSGCEKFS 314

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           +  NL+ L +    +T++ + H+K L+ L  LNL  +C + D+ L  +SG+  L SL +S
Sbjct: 315 DLINLKILNLGMNNITNSCLVHLKGLTKLESLNL-DSCRIGDEGLVHLSGMLELKSLELS 373

Query: 357 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           ++ + S GLRHL  L NL S+ L    VT + +++L
Sbjct: 374 DTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKL 409



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 158/305 (51%), Gaps = 19/305 (6%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E LSGL+ L  L+      +TA  +    GL              H     L GLM    
Sbjct: 255 EPLSGLNKLNLLNLEGCRHVTAACLDTLTGLYR----------HPHA----LAGLMY--- 297

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+  CN  +DS  +  S L NLK L +  + +T+S + +LKGL KL  LNL+ C +   
Sbjct: 298 LNLNRCN-FSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDE 356

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L  LS +  L  L L+  ++  +G    S + +L+ +NL F  +TD  L  L GLT+L 
Sbjct: 357 GLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLR 416

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           +LNLD+  + D GL  LT L  L  L+L   ++  SG  HL  L  L+S+ +   G++D 
Sbjct: 417 TLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDT 476

Query: 243 SLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
            ++ +  LSSL  LNL     +TD  L  ++ LTGL  L++  +R++ SG  +L+  KNL
Sbjct: 477 GVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNL 536

Query: 302 RSLEI 306
           RSL +
Sbjct: 537 RSLTL 541


>gi|226505324|ref|NP_001147302.1| regulatory subunit [Zea mays]
 gi|195609698|gb|ACG26679.1| regulatory subunit [Zea mays]
 gi|413937767|gb|AFW72318.1| regulatory subunit isoform 1 [Zea mays]
 gi|413937768|gb|AFW72319.1| regulatory subunit isoform 2 [Zea mays]
          Length = 582

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/391 (67%), Positives = 328/391 (83%)

Query: 16  FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 75
           F+R+NA+TA+GM+AFA L+NL+ LDLE C +IHGGL++LK L KLESLN+++CN I DSD
Sbjct: 192 FKRSNAVTAEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSD 251

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           +K L+ LTNLK LQ+SC K+TD G++Y++GLQKLT LNLEGCPVTAACL+++S L SL  
Sbjct: 252 IKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVL 311

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           LNLNRC + DDGCE F  +  LKVLNLGFN ITD CLVHLK L +LESLNLDSC IGD+G
Sbjct: 312 LNLNRCGIYDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNLDSCKIGDDG 371

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           L +L GL  L+ LELSDT+VG++GL+HLSGL NL+SINLSFT ++D  ++K++ L+SLKS
Sbjct: 372 LSHLKGLVLLQSLELSDTEVGNNGLQHLSGLRNLQSINLSFTLVTDIGVKKISVLNSLKS 431

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           +NLD RQITD GLAAL SLT LTHLDLFGA ITD+G    R FKNL SLE+CGG +TDAG
Sbjct: 432 VNLDNRQITDVGLAALISLTRLTHLDLFGACITDNGTNCFRYFKNLVSLEVCGGFVTDAG 491

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
           VK+IKDL +LTLLNLSQN NLTDKTLELISGLT L++LNVSNSR+++AGL+HL  L NLR
Sbjct: 492 VKNIKDLKALTLLNLSQNANLTDKTLELISGLTALINLNVSNSRVSNAGLKHLNDLHNLR 551

Query: 376 SLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           SL+L+S +VTAN++++L++  L NL+S RPE
Sbjct: 552 SLSLDSTRVTANEMRKLRATVLHNLISMRPE 582


>gi|302796665|ref|XP_002980094.1| hypothetical protein SELMODRAFT_419616 [Selaginella moellendorffii]
 gi|302822036|ref|XP_002992678.1| hypothetical protein SELMODRAFT_162512 [Selaginella moellendorffii]
 gi|300139524|gb|EFJ06263.1| hypothetical protein SELMODRAFT_162512 [Selaginella moellendorffii]
 gi|300152321|gb|EFJ18964.1| hypothetical protein SELMODRAFT_419616 [Selaginella moellendorffii]
          Length = 578

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/400 (61%), Positives = 303/400 (75%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            +G +NLTSLSF++N  IT  GM+  AGL NL  LDLERC +IH GLV +KGL KLE LN
Sbjct: 177 FTGFTNLTSLSFQKNKLITPAGMRHLAGLPNLKHLDLERCPKIHDGLVYIKGLTKLEKLN 236

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           + WCNCI  SDMK LSGLTNL  LQIS SKV D GI +LK L+KL +LN+EGCPVT AC+
Sbjct: 237 LGWCNCIRSSDMKQLSGLTNLLELQISRSKVKDFGITFLKDLKKLEVLNMEGCPVTFACM 296

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           D+++ L SL  LNL  C +SD GC K   +G+LK LNL +  ++D  +V+LK L +L+ L
Sbjct: 297 DTIAGLTSLTTLNLKSCYISDFGCRKLEGLGNLKNLNLSYTNVSDAGMVYLKNLKSLQFL 356

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           NLDSC IGD+G+ N   L NLK L+LSD+ +G+  L  L+GL+ LES+N+S T ++D  L
Sbjct: 357 NLDSCKIGDQGVQNFKNLVNLKSLDLSDSLIGNHALNFLTGLSKLESLNISSTMVTDMGL 416

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
            K++GL+SLKSLN+D+RQITDTGL ALTSLT LTHLDLF ARITD G   LR+FK L+SL
Sbjct: 417 HKISGLTSLKSLNIDSRQITDTGLMALTSLTNLTHLDLFSARITDYGIGSLRHFKKLQSL 476

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           E+CGGG+TD GVK +KDL+ LT LNLSQN  LTD+ LE +SGLT LVSLNV NS +T+AG
Sbjct: 477 EVCGGGITDVGVKSLKDLTDLTYLNLSQNGQLTDQALEALSGLTKLVSLNVGNSSVTNAG 536

Query: 365 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           L+HL PLKNL SL L+SCKVT   I++LQ+  LPNLV  R
Sbjct: 537 LQHLLPLKNLTSLALQSCKVTLWAIQKLQASSLPNLVIVR 576



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSR 359
           L +++  G  +TD GV+ ++   ++ ++ +++   ++D +L   +G T L SL+   N  
Sbjct: 134 LLAVDFSGSMVTDEGVQCLQICENVEIICMNECKYISDISLSYFTGFTNLTSLSFQKNKL 193

Query: 360 ITSAGLRHLKPLKNLRSLTLESC 382
           IT AG+RHL  L NL+ L LE C
Sbjct: 194 ITPAGMRHLAGLPNLKHLDLERC 216


>gi|14423508|gb|AAK62436.1|AF386991_1 Unknown protein [Arabidopsis thaliana]
 gi|20148357|gb|AAM10069.1| unknown protein [Arabidopsis thaliana]
          Length = 332

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 261/332 (78%), Positives = 297/332 (89%), Gaps = 1/332 (0%)

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLF 134
           M+PLS LTNL+SLQI CSK+TD GI+YLKGL KL LLNLEGC  VTAACLD+L+AL  L 
Sbjct: 1   MEPLSVLTNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLM 60

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           YLNLNRC  SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDE
Sbjct: 61  YLNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDE 120

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           GLV+L+G+  LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D  LRKL+GL+SL+
Sbjct: 121 GLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLR 180

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
           +LNLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG  +LRN K L+SLEICGGGLTD 
Sbjct: 181 TLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDT 240

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
           GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNL
Sbjct: 241 GVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNL 300

Query: 375 RSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           RSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 301 RSLTLESCKLSANDIRKLQATDLPNLVNFRPE 332



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 145/286 (50%), Gaps = 26/286 (9%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           +TA  +     L  L+ L+L RC                           +DS  +  S 
Sbjct: 45  VTAACLDTLTALAGLMYLNLNRCN-------------------------FSDSGCEKFSD 79

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           L NLK L +  + +T+S + +LKGL KL  LNL+ C +    L  LS +  L  L L+  
Sbjct: 80  LINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDT 139

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           ++  +G    S + +L+ +NL F  +TD  L  L GLT+L +LNLD+  + D GL  LT 
Sbjct: 140 EVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTS 199

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L  L  L+L   ++  SG  HL  L  L+S+ +   G++D  ++ +  LSSL  LNL   
Sbjct: 200 LTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLSSLTLLNLSQN 259

Query: 262 -QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
             +TD  L  ++ LTGL  L++  +R++ SG  +L+  KNLRSL +
Sbjct: 260 SNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTL 305



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 96/272 (35%), Positives = 138/272 (50%), Gaps = 27/272 (9%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L+ L+ L  L+  R N  +  G + F+ LINL  L+L      +  LV+LKGL KLES
Sbjct: 51  DTLTALAGLMYLNLNRCN-FSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLES 109

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+  C  I D  +  LSG+  LKSL++S ++V  +G+ +L GL  L  +NL    VT +
Sbjct: 110 LNLDSCR-IGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDS 168

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L  LS L SL  LNL+   ++D G    + +  L  L+L    ITD    HL+ L  L+
Sbjct: 169 GLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQ 228

Query: 183 SLNLDSCGIGDEGLVN-------------------------LTGLCNLKCLELSDTQVGS 217
           SL +   G+ D G+ N                         ++GL  L  L +S+++V S
Sbjct: 229 SLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSS 288

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
           SGLRHL  L NL S+ L    +S   +RKL  
Sbjct: 289 SGLRHLKPLKNLRSLTLESCKLSANDIRKLQA 320


>gi|168012567|ref|XP_001758973.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689672|gb|EDQ76042.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 584

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/403 (59%), Positives = 307/403 (76%), Gaps = 2/403 (0%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +LSGLSNLT+LS R NN ITA GM+ F  L++L  LDL+RC  I GG V LKGL  LE L
Sbjct: 180 SLSGLSNLTTLSLRSNNMITAAGMQNFTHLVSLKNLDLQRCPSIQGGFVYLKGLTTLEKL 239

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAA 122
           N+ WC  + +SD+K LSGL NLK LQIS SKV+DSG+A L GL KL  L++EGC  VT+ 
Sbjct: 240 NVGWCIGVRNSDIKHLSGLVNLKELQISRSKVSDSGLASLTGLTKLRSLSMEGCQAVTSK 299

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            ++S+  L  +++LN+N C L D G +K   + +L+ LN+G+N +++  +  LKGLTNLE
Sbjct: 300 GMESIGGLTGVWHLNVNSCFLHDSGFQKLEGLINLRTLNMGYNNVSNSGMGFLKGLTNLE 359

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISD 241
            LNLDSC IGD G+ N+ GL NLK L+LSDT++ S+GLR L+GL NLES+NLSFTG I+D
Sbjct: 360 RLNLDSCKIGDHGIENVKGLVNLKMLDLSDTEIESAGLRFLTGLKNLESLNLSFTGGIAD 419

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             LR +A ++SL SLNLD++QITDTGLAALT LTGL  LDLFGARITD G A LR+FK L
Sbjct: 420 SGLRTIATITSLTSLNLDSKQITDTGLAALTGLTGLKTLDLFGARITDYGMACLRHFKKL 479

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           ++LE+CGGG+TDAGV+ IKDL+SLT LNLSQN  LTD +L+ +SG+  LVSLN++NSR+T
Sbjct: 480 QTLELCGGGITDAGVRSIKDLTSLTSLNLSQNMRLTDNSLQYLSGMKNLVSLNLANSRVT 539

Query: 362 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           +AGL+HL+PL NL SL L+ CKVT   ++RLQ+  LP+L   R
Sbjct: 540 NAGLQHLRPLTNLTSLALQDCKVTLPAVERLQATYLPSLTVIR 582



 Score = 38.5 bits (88), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SN 357
           ++L +L+I    +TD G+  ++  ++L  L L+   ++ D+ L  +SGL+ L +L++ SN
Sbjct: 136 ESLLALDISSSTVTDEGLSFLESCTNLQSLILNACESIADEGLTSLSGLSNLTTLSLRSN 195

Query: 358 SRITSAGLRHLKPLKNLRSLTLESCK 383
           + IT+AG+++   L +L++L L+ C 
Sbjct: 196 NMITAAGMQNFTHLVSLKNLDLQRCP 221


>gi|217074604|gb|ACJ85662.1| unknown [Medicago truncatula]
          Length = 331

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/331 (71%), Positives = 278/331 (83%)

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           MK +SG  NLK LQIS S +TD GI+YL+GLQKL+ LN+EGC +TAAC + +SAL +L  
Sbjct: 1   MKAISGFINLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALAC 60

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           LNLNRC LSDDG EKFS +  LK L+L FN+ITD CLVHLKGLT LE LNLDSC IGDEG
Sbjct: 61  LNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEG 120

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           LVNLTGL  LK L LSDT+VG+SG+R++SGL  LE +NLSFT ++D  L++L GL++LKS
Sbjct: 121 LVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKS 180

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           LNLDARQITD GLA LTSL+GL  LDLFGARITDSG  YLR+FKNL+SLEICGG LTDAG
Sbjct: 181 LNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAG 240

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
           VK+I+++ SLT LNLSQNC LTDKTLELISG+T L SLNVSNSR+T+ GLR+LKPLKNLR
Sbjct: 241 VKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLR 300

Query: 376 SLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           +L+LESCKV A DIK+L S DLPNL+SFRPE
Sbjct: 301 TLSLESCKVNAADIKKLHSTDLPNLISFRPE 331



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 170/325 (52%), Gaps = 26/325 (8%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC---------------- 70
           MKA +G INL +L +   +    G+  L+GL KL +LN++ C+                 
Sbjct: 1   MKAISGFINLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALAC 60

Query: 71  -------ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
                  ++D   +  SGLT LK L ++ +K+TD+ + +LKGL KL  LNL+ C +    
Sbjct: 61  LNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEG 120

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L +L+ L  L  L L+  ++ + G    S +  L+ LNL F  +TD  L  L GLTNL+S
Sbjct: 121 LVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKS 180

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           LNLD+  I D GL NLT L  L  L+L   ++  SG  +L    NL+S+ +    ++D  
Sbjct: 181 LNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAG 240

Query: 244 LRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           ++ +  + SL  LNL    ++TD  L  ++ +T L  L++  +R+T+ G  YL+  KNLR
Sbjct: 241 VKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLR 300

Query: 303 --SLEICGGGLTDAGVKHIKDLSSL 325
             SLE C     D    H  DL +L
Sbjct: 301 TLSLESCKVNAADIKKLHSTDLPNL 325


>gi|70663921|emb|CAE02935.3| OSJNBa0014K14.7 [Oryza sativa Japonica Group]
          Length = 557

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/406 (58%), Positives = 297/406 (73%), Gaps = 28/406 (6%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + LSGLSN+TSLSF++ +A+TA+G KAFA ++NL  LDLERC +IHGGLV+LKGL KLE 
Sbjct: 178 KTLSGLSNVTSLSFKKCSAVTAEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEK 237

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+++CN ITDSDMK LS LTNL+ LQ+SC K++D G++YL+GL KL  LNLEGC VTAA
Sbjct: 238 LNLRYCNGITDSDMKHLSDLTNLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAA 297

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL+ +S L SL  LNL+RC + D+GCE    +  LKVLNLGFN ITD CLVHLK L NLE
Sbjct: 298 CLEVISGLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLE 357

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            LNLDSC IGDEGL +L                    + H      L++ N + + +   
Sbjct: 358 CLNLDSCKIGDEGLAHLK-------------------VFH----KTLKAENHTISLMQTS 394

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTS--LTGLTHLDLFGARITDSGAAYLRNFKN 300
             +KL    + +  + +    +   +  L+S  LTGLTHLDLFGARITD+G   L+ FKN
Sbjct: 395 ETKKLG---TFRHRSWEQWTSSSLWMVFLSSQGLTGLTHLDLFGARITDAGTNCLKYFKN 451

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L+SLE+CGG +TDAGVK+IKDL +LTLLNLSQN NLTDK+LELIS LT LVSLNVSNSR+
Sbjct: 452 LQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRV 511

Query: 361 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           +++GL HLKPL+NLRSL+LESCKVTA +IK+LQ   LPNLVS RPE
Sbjct: 512 SNSGLHHLKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSVRPE 557


>gi|168057635|ref|XP_001780819.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667754|gb|EDQ54376.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 564

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/397 (58%), Positives = 302/397 (76%), Gaps = 1/397 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LSGLSNLT+LS R +N ITA GM+ F  L++L  LDLERC  IHGG V L+GL  LE LN
Sbjct: 162 LSGLSNLTTLSLRSSNLITAAGMRNFTNLVSLKNLDLERCPLIHGGFVYLRGLTTLEKLN 221

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           + WC  + ++D+  L+G+ NLK LQIS SKV DSG+A LKG+  L  L++EGCP+TA  +
Sbjct: 222 VGWCIGVRNADITHLAGIVNLKELQISRSKVNDSGVASLKGMTNLRSLSMEGCPITAQSM 281

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            +++ L +L +LN+N C L D GC+K   + +L+ LNLG+NE+TD  +V LKGLTNLE L
Sbjct: 282 KTIAGLTTLCHLNINSCYLPDSGCQKLEGLINLRTLNLGYNELTDSGMVFLKGLTNLERL 341

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGS 243
           NLDSC +GDEG+ ++ GL NL+ L+LSD++VG+ GLR LSGL  LE +NLSFT G++D  
Sbjct: 342 NLDSCKVGDEGIKHVKGLLNLRMLDLSDSEVGNVGLRFLSGLKKLEILNLSFTGGVTDIG 401

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           L  +A ++SL SLNLD++QITDTGLAALT LTGL +LDLFGA+ITD G A LR+FKNL+S
Sbjct: 402 LSTIATITSLTSLNLDSKQITDTGLAALTGLTGLKNLDLFGAKITDYGMARLRHFKNLQS 461

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           LE+CGGG+TD GV  IKDL+ LT LNLS N  LTD++L+ +SG+  LVSLNV+NS++T+A
Sbjct: 462 LELCGGGITDVGVSSIKDLTLLTSLNLSHNLRLTDRSLQYLSGMENLVSLNVANSKVTNA 521

Query: 364 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           GL+HL+PL  L SL L+ CKVT   +  L++  LPNL
Sbjct: 522 GLQHLRPLTKLTSLALQGCKVTRTAVDHLKATSLPNL 558



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 171/349 (48%), Gaps = 53/349 (15%)

Query: 107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDD------------------- 146
           + L  L++ G PVT   L  L +  +L  L+LN C  +SD+                   
Sbjct: 117 ESLLALDISGSPVTDDGLACLQSCTNLQTLSLNSCDHISDEGLSVLSGLSNLTTLSLRSS 176

Query: 147 ------GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 199
                 G   F+ + SLK L+L    +     V+L+GLT LE LN+  C G+ +  + +L
Sbjct: 177 NLITAAGMRNFTNLVSLKNLDLERCPLIHGGFVYLRGLTTLEKLNVGWCIGVRNADITHL 236

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS------- 252
            G+ NLK L++S ++V  SG+  L G+TNL S+++    I+  S++ +AGL++       
Sbjct: 237 AGIVNLKELQISRSKVNDSGVASLKGMTNLRSLSMEGCPITAQSMKTIAGLTTLCHLNIN 296

Query: 253 -----------------LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
                            L++LNL   ++TD+G+  L  LT L  L+L   ++ D G  ++
Sbjct: 297 SCYLPDSGCQKLEGLINLRTLNLGYNELTDSGMVFLKGLTNLERLNLDSCKVGDEGIKHV 356

Query: 296 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
           +   NLR L++    + + G++ +  L  L +LNLS    +TD  L  I+ +T L SLN+
Sbjct: 357 KGLLNLRMLDLSDSEVGNVGLRFLSGLKKLEILNLSFTGGVTDIGLSTIATITSLTSLNL 416

Query: 356 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
            + +IT  GL  L  L  L++L L   K+T   + RL  R   NL S  
Sbjct: 417 DSKQITDTGLAALTGLTGLKNLDLFGAKITDYGMARL--RHFKNLQSLE 463


>gi|356519278|ref|XP_003528300.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 2 [Glycine max]
          Length = 529

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/404 (54%), Positives = 270/404 (66%), Gaps = 50/404 (12%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E +SGLSNLTSLSFRRN++I+AQGM AF+GL+NLVKLDLERC  IHGGLV+L+GL KLES
Sbjct: 174 ECISGLSNLTSLSFRRNDSISAQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLES 233

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+KWCNCITD DMKPLS L +LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAA
Sbjct: 234 LNLKWCNCITDYDMKPLSELASLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAA 293

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CLDSL+ L +L  LNLNRC LSD+GC+K S++ +LKVLNLGFN ITD CLVHLKGLT LE
Sbjct: 294 CLDSLAELPALSNLNLNRCNLSDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLE 353

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC IGDEGLVNL GL  L CLELSDT+VGS+GL HLSGLT L  ++L    I+D 
Sbjct: 354 SLNLDSCKIGDEGLVNLAGLEQLNCLELSDTEVGSNGLHHLSGLTGLTDLDLFGARITDF 413

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-GARITDSGAAYLRNFKNL 301
               L    +L+SL +    +TD G+  +  L+ L  L+L   + +TD     +     L
Sbjct: 414 GTNYLKKFKNLRSLEICGGVLTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGL 473

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
            SL +    +T+AG++H+K L +L  L L ++C +T                        
Sbjct: 474 VSLNVSNSRITNAGLQHLKTLKNLRSLTL-ESCKVT------------------------ 508

Query: 362 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 405
                                   ANDIK+L+S  LPNLVSFRP
Sbjct: 509 ------------------------ANDIKKLKSIYLPNLVSFRP 528



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNSR 359
           L S+++ G  +TD G+ ++KD  SL  LNL+    ++D+ LE ISGL+ L SL+   N  
Sbjct: 133 LLSVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDS 192

Query: 360 ITSAGLRHLKPLKNLRSLTLESC 382
           I++ G+     L NL  L LE C
Sbjct: 193 ISAQGMSAFSGLVNLVKLDLERC 215


>gi|24461848|gb|AAN62335.1|AF506028_2 CTV.1 [Citrus trifoliata]
          Length = 205

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 187/272 (68%), Positives = 189/272 (69%), Gaps = 77/272 (28%)

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
           LGSLFYLNLNRCQLSDDGCEKFS        NLGFNEITDECLV+          +LDSC
Sbjct: 1   LGSLFYLNLNRCQLSDDGCEKFS--------NLGFNEITDECLVY----------HLDSC 42

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
           GIGDEGLVN                                   LSFTGISDGSLRKLAG
Sbjct: 43  GIGDEGLVNY----------------------------------LSFTGISDGSLRKLAG 68

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           LSSLKSLNLDARQITDTGLAALTS     HLDLFGARITDSGAAYLRNFKNLRSLEICGG
Sbjct: 69  LSSLKSLNLDARQITDTGLAALTS----AHLDLFGARITDSGAAYLRNFKNLRSLEICGG 124

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
           GLTDAGVKHIKDLSSL LLNLSQNCNLTDKTLE            VSNSRITSAGLRH  
Sbjct: 125 GLTDAGVKHIKDLSSLALLNLSQNCNLTDKTLEY-----------VSNSRITSAGLRH-- 171

Query: 370 PLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 401
                    LESCKVTANDIKRLQSRDLPNL 
Sbjct: 172 --------PLESCKVTANDIKRLQSRDLPNLF 195


>gi|255088361|ref|XP_002506103.1| predicted protein [Micromonas sp. RCC299]
 gi|226521374|gb|ACO67361.1| predicted protein [Micromonas sp. RCC299]
          Length = 610

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 160/393 (40%), Positives = 237/393 (60%), Gaps = 2/393 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           ++ +S L  L+    + IT  G++  +G   L  ++LERC  +  GLV L GL +LE L+
Sbjct: 202 VASMSRLRRLACAGCDGITGAGLRYVSGATKLRCVNLERCNGLTNGLVYLSGLTELERLD 261

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             WCN +  +D+  L  L  LK L ++ +KV D G+A +  L  L  LNL GC +T    
Sbjct: 262 AGWCNHVDSNDVTSLRSLKKLKHLNLARTKVDDQGVATIGSLSALETLNLAGCRITDGAC 321

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             L  L +L  L+L  C++ D G  + + +  L+VLNLG++ +TDE + HL  L  L  +
Sbjct: 322 FLLGGLTALKELSLEWCRVGDGGVRRLASLAKLEVLNLGYSSVTDEGVQHLAPLVKLREI 381

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           +LDSC +GD+    L    NL+ + LSDT VG+ GL+ +S LT L  +NLS++ +SD  +
Sbjct: 382 DLDSCQVGDDACKALAEWPNLEDVNLSDTAVGNLGLKRISKLTRLRRVNLSYSNVSDDGV 441

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
             L   +S++SL+LD R +TD GL  L  L  +  LDLFGARITD GA +LR+   L++L
Sbjct: 442 MYLENAASIRSLSLDTRMVTDEGLGYLAKLKDIEELDLFGARITDEGAKHLRHMPRLKTL 501

Query: 305 EICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           E+CGGG+TDAGVKHI D    LTLLNL QN  ++D  +  +  L  L SLN+  SRI++ 
Sbjct: 502 ELCGGGITDAGVKHIGDACRELTLLNLGQNFRISDAAVPFLLQLHKLGSLNLQYSRISNE 561

Query: 364 GLRHLKPLKNLRSLTLESC-KVTANDIKRLQSR 395
           G+  L  L NL +L L+ C +V+   ++ L+++
Sbjct: 562 GVTQLSQLSNLTTLALKGCNRVSQAAVEELRAK 594


>gi|147832652|emb|CAN74892.1| hypothetical protein VITISV_002002 [Vitis vinifera]
          Length = 300

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 148/181 (81%), Positives = 166/181 (91%)

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           + GL NLESINLSFT ++D  LRK + LSSLKSLNLDA QITD GLAALTSLTGLTHLDL
Sbjct: 113 MEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTHLDL 172

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
           FGARITDSG +YLRNFKNL+SLEICGGGLTDAGVK+IKDL+ LT+LNLSQNCNLTDK+LE
Sbjct: 173 FGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLE 232

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
           LISGLT LVSL+VSNSRIT+AGL+HLK LKNL+SLTL+SCKVT NDIK+LQS+DLPNL +
Sbjct: 233 LISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTVNDIKKLQSKDLPNLPA 292

Query: 403 F 403
           F
Sbjct: 293 F 293



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 4/178 (2%)

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
           + +L+ +NL F  +TD  L     L++L+SLNLD+  I D GL  LT L  L  L+L   
Sbjct: 116 LANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTHLDLFGA 175

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALT 272
           ++  SG  +L    NL+S+ +   G++D  ++ +  L+ L  LNL     +TD  L  ++
Sbjct: 176 RITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLELIS 235

Query: 273 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
            LT L  L +  +RIT++G  +L+  KNL+SL +    +T   V  IK L S  L NL
Sbjct: 236 GLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVT---VNDIKKLQSKDLPNL 290



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 24/165 (14%)

Query: 51  LVNLKGLMKLESLNIKW-----------------------CNCITDSDMKPLSGLTNLKS 87
            VN++GL  LES+N+ +                        + ITD+ +  L+ LT L  
Sbjct: 110 FVNMEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTH 169

Query: 88  LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDD 146
           L +  +++TDSG +YL+  + L  L + G  +T A + ++  L  L  LNL++ C L+D 
Sbjct: 170 LDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDK 229

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
             E  S + +L  L++  + IT+  L HLK L NL+SL LDSC +
Sbjct: 230 SLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKV 274



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 121/253 (47%), Gaps = 24/253 (9%)

Query: 55  KGLMKLESLNIKWCNCI---TDSDMKPLSGLTNLKSLQ---------ISCSKVTDSGIAY 102
           +G + LE  NI W   +      D+  + GL +++ +          I   K+T S I +
Sbjct: 45  EGSLDLEKANI-WLGTLLLERSEDIYRMKGLLSVQGMDERFVFQDYLILFYKITTSLIPF 103

Query: 103 ---------LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
                    ++GL  L  +NL    VT + L   SAL SL  LNL+  Q++D G    + 
Sbjct: 104 FYTILLFVNMEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTS 163

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
           +  L  L+L    ITD    +L+   NL+SL +   G+ D G+ N+  L  L  L LS  
Sbjct: 164 LTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQN 223

Query: 214 -QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 272
             +    L  +SGLT L S+++S + I++  L+ L  L +LKSL LD+ ++T   +  L 
Sbjct: 224 CNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTVNDIKKLQ 283

Query: 273 SLTGLTHLDLFGA 285
           S   L +L  F A
Sbjct: 284 S-KDLPNLPAFAA 295



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 6/119 (5%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +L+GL++L     R    IT  G        NL  L++        G+ N+K L  L  L
Sbjct: 163 SLTGLTHLDLFGAR----ITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVL 218

Query: 64  NIKWCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           N+   NC +TD  ++ +SGLT L SL +S S++T++G+ +LK L+ L  L L+ C VT 
Sbjct: 219 NLSQ-NCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTV 276


>gi|413937766|gb|AFW72317.1| hypothetical protein ZEAMMB73_434085 [Zea mays]
          Length = 403

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/212 (66%), Positives = 177/212 (83%)

Query: 16  FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 75
           F+R+NA+TA+GM+AFA L+NL+ LDLE C +IHGGL++LK L KLESLN+++CN I DSD
Sbjct: 192 FKRSNAVTAEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSD 251

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           +K L+ LTNLK LQ+SC K+TD G++Y++GLQKLT LNLEGCPVTAACL+++S L SL  
Sbjct: 252 IKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVL 311

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           LNLNRC + DDGCE F  +  LKVLNLGFN ITD CLVHLK L +LESLNLDSC IGD+G
Sbjct: 312 LNLNRCGIYDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNLDSCKIGDDG 371

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 227
           L +L GL  L+ LELSDT+VG++GL+HLSGL+
Sbjct: 372 LSHLKGLVLLQSLELSDTEVGNNGLQHLSGLS 403



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 2/175 (1%)

Query: 219 GLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
           GL HL  LT LES+N+ +   I+D  ++ L  L++LK L L   +ITD G++ +  L  L
Sbjct: 226 GLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQKL 285

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
           THL+L G  +T +    +    +L  L +   G+ D G ++ + L  L +LNL  N  +T
Sbjct: 286 THLNLEGCPVTAACLEAISGLSSLVLLNLNRCGIYDDGCENFEGLKRLKVLNLGFN-YIT 344

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           D  L  +  L  L SLN+ + +I   GL HLK L  L+SL L   +V  N ++ L
Sbjct: 345 DACLVHLKELISLESLNLDSCKIGDDGLSHLKGLVLLQSLELSDTEVGNNGLQHL 399



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 129/281 (45%), Gaps = 28/281 (9%)

Query: 71  ITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC------------ 117
           + D+ M+ + S   +L S+ ISCS+V DSGI  L+    +  L    C            
Sbjct: 123 VKDAWMEVVASQKQSLLSVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLS 182

Query: 118 --------------PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163
                          VTA  + + + L +L  L+L  C     G      +  L+ LN+ 
Sbjct: 183 GLSNLSSLSFKRSNAVTAEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMR 242

Query: 164 F-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
           + N I D  + +L  LTNL+ L L  C I D G+  + GL  L  L L    V ++ L  
Sbjct: 243 YCNYIADSDIKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEA 302

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           +SGL++L  +NL+  GI D       GL  LK LNL    ITD  L  L  L  L  L+L
Sbjct: 303 ISGLSSLVLLNLNRCGIYDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNL 362

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
              +I D G ++L+    L+SLE+    + + G++H+  LS
Sbjct: 363 DSCKIGDDGLSHLKGLVLLQSLELSDTEVGNNGLQHLSGLS 403



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-IT 288
           S+++S + ++D  +  L   SS++SL  +   QI+++GL  L+ L+ L+ L    +  +T
Sbjct: 140 SVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVT 199

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
             G     N  NL +L++ G      G+ H+KDL+ L  LN+     + D  ++ ++ LT
Sbjct: 200 AEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLT 259

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
            L  L +S  +IT  G+ +++ L+ L  L LE C VTA
Sbjct: 260 NLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTA 297


>gi|414586494|tpg|DAA37065.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
          Length = 400

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 143/223 (64%), Positives = 175/223 (78%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + LSG SNLTSLS ++  A+TA+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE 
Sbjct: 178 KTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+++CN ITDSDMK LS LTNL+ LQ+S  K++  G++YL+GL KL  LNLEGC VTA 
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAV 297

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL+ +S L SL  LNL+RC + D+GCE    +  LK L+LGFN+ITD CL+HLK L NLE
Sbjct: 298 CLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLE 357

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
            LNLDSC IGDEGL +L GL  LK LELSDT+VGS+GLRHLSG
Sbjct: 358 CLNLDSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHLSG 400



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 120/264 (45%), Gaps = 26/264 (9%)

Query: 35  NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 93
           +L+ +DL        G   LK    ++SL   +C+ I++  +K LSG +NL SL I  C+
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCP-------------------------VTAACLDSLS 128
            VT  G      L  L  L+LE CP                         +T + +  LS
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L +L  L L+ C++S  G      +  L  LNL    +T  CL  +  L +L  LNL  
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSR 315

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
           CGI DEG  NL GL  LK L L   Q+  + L HL  L NLE +NL    I D  L  L 
Sbjct: 316 CGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLK 375

Query: 249 GLSSLKSLNLDARQITDTGLAALT 272
           GL  LK+L L   ++   GL  L+
Sbjct: 376 GLIQLKNLELSDTEVGSNGLRHLS 399



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 154/302 (50%), Gaps = 29/302 (9%)

Query: 71  ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 128
           +TD+ M+ ++    +L S+ +SCS VTDSG   LK    +  L  + C  ++   L +LS
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLS 181

Query: 129 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
              +L  L++ +C  ++ +G + F+ + +L  L+L      +  L+HLKGL  LE LNL 
Sbjct: 182 GFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLR 241

Query: 188 SC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
            C GI D  +  L+ L NL+ L+LS  ++ + G+ +L GL  L  +NL    ++   L  
Sbjct: 242 YCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEV 301

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           ++ L+SL  LNL    I D G   L  LT L  L L   +IT                  
Sbjct: 302 ISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQIT------------------ 343

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
                 DA + H+KDL +L  LNL  +C + D+ L  + GL  L +L +S++ + S GLR
Sbjct: 344 ------DACLIHLKDLVNLECLNL-DSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLR 396

Query: 367 HL 368
           HL
Sbjct: 397 HL 398



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 159/309 (51%), Gaps = 9/309 (2%)

Query: 90  ISCSKVTDSGIAYLKG--LQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDD 146
           + C  +T++ +   +   LQ + L +  G  VT A ++ +++ G SL  ++L+   ++D 
Sbjct: 93  VECGCLTEASLGAFRDCDLQDICLGDYPG--VTDAWMEVVASQGQSLLSVDLSCSDVTDS 150

Query: 147 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 204
           G        S++ L   + ++I++  L  L G +NL SL++  C  +  EG      L N
Sbjct: 151 GFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVN 210

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQI 263
           L  L+L      + GL HL GL  LE +NL +  GI+D  ++ L+ L++L+ L L + +I
Sbjct: 211 LVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKI 270

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
           +  G++ L  L  L HL+L G  +T      +    +L  L +   G+ D G +++K L+
Sbjct: 271 SAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLT 330

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
            L  L+L  N  +TD  L  +  L  L  LN+ + +I   GL HLK L  L++L L   +
Sbjct: 331 KLKALSLGFN-QITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLIQLKNLELSDTE 389

Query: 384 VTANDIKRL 392
           V +N ++ L
Sbjct: 390 VGSNGLRHL 398



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 28/190 (14%)

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-ARIT 288
           S++LS + ++D     L   SS++SL  D   QI++ GL  L+  + LT L +   A +T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198

Query: 289 DSGAAYLRNFKNL------RSLEICGG-------------------GLTDAGVKHIKDLS 323
             GA    N  NL      R  +I GG                   G+TD+ +K++ DL+
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           +L  L LS +C ++   +  + GL  L  LN+    +T+  L  +  L +L  L L  C 
Sbjct: 259 NLRELQLS-SCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCG 317

Query: 384 VTANDIKRLQ 393
           +     + L+
Sbjct: 318 ICDEGCENLK 327



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 236 FTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 293
           + G++D  +  +A    SL S++L    +TD+G   L   + +  L   +  +I++ G  
Sbjct: 119 YPGVTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLK 178

Query: 294 YLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
            L  F NL SL I  C   +T  G K   +L +L  L+L +   +    + L        
Sbjct: 179 TLSGFSNLTSLSIKKCAA-VTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
                 + IT + +++L  L NLR L L SCK++A  +  L+
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLR 279


>gi|384254255|gb|EIE27729.1| RNI-like protein, partial [Coccomyxa subellipsoidea C-169]
          Length = 515

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/340 (41%), Positives = 208/340 (61%), Gaps = 2/340 (0%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 115
           G+ +LE+L++ WC+ ITD+D+K L+ LT +  LQ+S + V DSGI  L+ + +L  L L 
Sbjct: 165 GMKQLENLDLSWCSGITDADVKALAALTAITGLQLSRTLVADSGIFALRSMSRLRCLGLA 224

Query: 116 GCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
           GC  ++   + S+SAL SL  LNL  C +S  G    S +  L+ LN+ +    D  L  
Sbjct: 225 GCSGISNGAVGSVSALTSLEELNLEWCTVSVKGLSHLSTLTELRSLNVAYTTAGDNALAA 284

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
              LTNL +LNLDSC + D GL +++ L NL+ + LSDT +   G+   + L  ++ +NL
Sbjct: 285 WTSLTNLRTLNLDSCPVSDRGLHHISELTNLEDVNLSDTAITDQGMIAFAPLKGMQRLNL 344

Query: 235 SFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           S+T G+ D  L  +A L++L  L+LD R  TD GL  +  LT L  LDLFGARITD+G  
Sbjct: 345 SYTAGVGDLGLAAVARLTALTELHLDGRSFTDVGLRTIAPLTQLQTLDLFGARITDAGCV 404

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
           +LR F+ L  LEICGGG++D GVK +  L+ L  L+L+QN  +TD+    +SGL+ L  L
Sbjct: 405 HLRPFRRLERLEICGGGISDEGVKELIWLTGLQHLSLAQNARITDRASLFLSGLSQLRGL 464

Query: 354 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
           N++ +++T  G+  L+ L NL SL L+  +V      RLQ
Sbjct: 465 NLTGTQLTGNGILPLRSLTNLESLCLKRTRVKQAAADRLQ 504



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 131/256 (51%), Gaps = 8/256 (3%)

Query: 2   TENLSGLSNLTSLSFRR--NNAITAQG---MKAFAGLINLVKLDLERCTRIHGGLVNLKG 56
           T ++ GLS+L++L+  R  N A T  G   + A+  L NL  L+L+ C     GL ++  
Sbjct: 252 TVSVKGLSHLSTLTELRSLNVAYTTAGDNALAAWTSLTNLRTLNLDSCPVSDRGLHHISE 311

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLE 115
           L  LE +N+     ITD  M   + L  ++ L +S +  V D G+A +  L  LT L+L+
Sbjct: 312 LTNLEDVNLS-DTAITDQGMIAFAPLKGMQRLNLSYTAGVGDLGLAAVARLTALTELHLD 370

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
           G   T   L +++ L  L  L+L   +++D GC        L+ L +    I+DE +  L
Sbjct: 371 GRSFTDVGLRTIAPLTQLQTLDLFGARITDAGCVHLRPFRRLERLEICGGGISDEGVKEL 430

Query: 176 KGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
             LT L+ L+L  +  I D   + L+GL  L+ L L+ TQ+  +G+  L  LTNLES+ L
Sbjct: 431 IWLTGLQHLSLAQNARITDRASLFLSGLSQLRGLNLTGTQLTGNGILPLRSLTNLESLCL 490

Query: 235 SFTGISDGSLRKLAGL 250
             T +   +  +L  L
Sbjct: 491 KRTRVKQAAADRLQPL 506



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 138/326 (42%), Gaps = 53/326 (16%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESL 63
           L+ L+ +T L   R   +   G+ A   +  L  L L  C+ I  G V ++  L  LE L
Sbjct: 188 LAALTAITGLQLSRT-LVADSGIFALRSMSRLRCLGLAGCSGISNGAVGSVSALTSLEEL 246

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           N++WC  ++   +  LS LT L+SL ++ +   D+ +A    L  L  LNL+ CPV+   
Sbjct: 247 NLEWCT-VSVKGLSHLSTLTELRSLNVAYTTAGDNALAAWTSLTNLRTLNLDSCPVSDRG 305

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN------------------ 165
           L  +S L +L  +NL+   ++D G   F+ +  ++ LNL +                   
Sbjct: 306 LHHISELTNLEDVNLSDTAITDQGMIAFAPLKGMQRLNLSYTAGVGDLGLAAVARLTALT 365

Query: 166 -------------------------------EITDECLVHLKGLTNLESLNLDSCGIGDE 194
                                           ITD   VHL+    LE L +   GI DE
Sbjct: 366 ELHLDGRSFTDVGLRTIAPLTQLQTLDLFGARITDAGCVHLRPFRRLERLEICGGGISDE 425

Query: 195 GLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
           G+  L  L  L+ L L+ + ++       LSGL+ L  +NL+ T ++   +  L  L++L
Sbjct: 426 GVKELIWLTGLQHLSLAQNARITDRASLFLSGLSQLRGLNLTGTQLTGNGILPLRSLTNL 485

Query: 254 KSLNLDARQITDTGLAALTSLTGLTH 279
           +SL L   ++       L  L    H
Sbjct: 486 ESLCLKRTRVKQAAADRLQPLLPRIH 511


>gi|59802533|gb|AAX07510.1| putative regulatory subunit [Gemmata sp. Wa1-1]
          Length = 550

 Score =  221 bits (562), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 156/382 (40%), Positives = 220/382 (57%), Gaps = 4/382 (1%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           +T  G++   GL NL  L L      + GL  LK L  L +L++ +   +TD+ ++ L G
Sbjct: 6   VTDAGLQELKGLANLTSLGLSATKVTNEGLKELKELTNLTALDL-FSTGVTDTGLQELKG 64

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           LTNL SL +  ++VT +G+  LKGL  LT LNL    VT A L  L  L  L  L+L   
Sbjct: 65  LTNLTSLNLGVTQVTGAGLQELKGLTNLTSLNLGSTGVTDAGLQDLKGLNKLASLDLRGT 124

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           +++D G ++   + SL  L L   E+T+  L  LKGL NL SL+L    + D GL  L G
Sbjct: 125 EVTDVGLQELKGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTRVTDVGLQELKG 184

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L NL  L+L DT+V  +GL+ L GLTNL +++L  T ++D  L++L GL+ L SL+L   
Sbjct: 185 LNNLASLDLRDTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLSRT 244

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
            +T TGL  L S T L  LDL G R+TD+G   L+   +L SL + G  +TD G+K +K 
Sbjct: 245 GVTGTGLIELKSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLKELKG 304

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           L+SLT L+LS     TD  L+ ++GLT L SL++S++R+T  GL+ LK    L SL L  
Sbjct: 305 LTSLTSLHLS-GTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTSLHLGG 363

Query: 382 CKVTANDIKRLQSRDLPNLVSF 403
             VT   +K L+   L NL + 
Sbjct: 364 TGVTDTGLKELKG--LTNLTAL 383



 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 160/403 (39%), Positives = 227/403 (56%), Gaps = 5/403 (1%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           ++L GL+ L SL  R    +T  G++   GL +L +L L      + GL  LKGL  L S
Sbjct: 108 QDLKGLNKLASLDLR-GTEVTDVGLQELKGLNSLTELRLRATEVTNVGLQELKGLNNLAS 166

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L+++    +TD  ++ L GL NL SL +  +KVTD+G+  LKGL  LT L+L    VT  
Sbjct: 167 LDLRDTR-VTDVGLQELKGLNNLASLDLRDTKVTDTGLKELKGLTNLTALDLFSTQVTDV 225

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L  L+ L  L  L+L+R  ++  G  +      L +L+L    +TD  L  LKGLT+L 
Sbjct: 226 GLKELNGLTKLASLDLSRTGVTGTGLIELKSFTKLALLDLSGTRVTDAGLHQLKGLTSLT 285

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SL+L    + D GL  L GL +L  L LS T+   +GL+ L+GLTNL S++LS T ++D 
Sbjct: 286 SLHLGGTRVTDVGLKELKGLTSLTSLHLSGTRTTDAGLQELNGLTNLTSLHLSDTRVTDV 345

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L++L   + L SL+L    +TDTGL  L  LT LT LDLF  ++TD G   L     L 
Sbjct: 346 GLKELKSFTKLTSLHLGGTGVTDTGLKELKGLTNLTALDLFSTQVTDVGLQELNGLTKLT 405

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SL +    +TD G+K +K+L+ L LL+LS    +TD  L+ +SGLT L  L +  +R+T 
Sbjct: 406 SLYLSAAAITDTGLKELKELTQLALLDLS-GTRVTDAGLQELSGLTKLAFLRLGGTRVTD 464

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 405
           AGL+ LK L +L SL L   +VT   ++ L    L NL +  P
Sbjct: 465 AGLKELKGLTSLTSLHLSGTRVTDAGLQELSG--LTNLTTTGP 505



 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 150/391 (38%), Positives = 215/391 (54%), Gaps = 3/391 (0%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L  L+NLT+L    +  +T  G++   GL NL  L+L        GL  LKGL  L S
Sbjct: 36  KELKELTNLTALDLF-STGVTDTGLQELKGLTNLTSLNLGVTQVTGAGLQELKGLTNLTS 94

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+     +TD+ ++ L GL  L SL +  ++VTD G+  LKGL  LT L L    VT  
Sbjct: 95  LNL-GSTGVTDAGLQDLKGLNKLASLDLRGTEVTDVGLQELKGLNSLTELRLRATEVTNV 153

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L  L  L +L  L+L   +++D G ++   + +L  L+L   ++TD  L  LKGLTNL 
Sbjct: 154 GLQELKGLNNLASLDLRDTRVTDVGLQELKGLNNLASLDLRDTKVTDTGLKELKGLTNLT 213

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           +L+L S  + D GL  L GL  L  L+LS T V  +GL  L   T L  ++LS T ++D 
Sbjct: 214 ALDLFSTQVTDVGLKELNGLTKLASLDLSRTGVTGTGLIELKSFTKLALLDLSGTRVTDA 273

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L +L GL+SL SL+L   ++TD GL  L  LT LT L L G R TD+G   L    NL 
Sbjct: 274 GLHQLKGLTSLTSLHLGGTRVTDVGLKELKGLTSLTSLHLSGTRTTDAGLQELNGLTNLT 333

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SL +    +TD G+K +K  + LT L+L     +TD  L+ + GLT L +L++ ++++T 
Sbjct: 334 SLHLSDTRVTDVGLKELKSFTKLTSLHLG-GTGVTDTGLKELKGLTNLTALDLFSTQVTD 392

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
            GL+ L  L  L SL L +  +T   +K L+
Sbjct: 393 VGLQELNGLTKLTSLYLSAAAITDTGLKELK 423



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 181/337 (53%), Gaps = 27/337 (8%)

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 151
            ++VTD+G+  LKGL  LT L L    VT   L  L  L +L  L+L    ++D G ++ 
Sbjct: 3   STQVTDAGLQELKGLANLTSLGLSATKVTNEGLKELKELTNLTALDLFSTGVTDTGLQEL 62

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL--- 208
             + +L  LNLG  ++T   L  LKGLTNL SLNL S G+ D GL +L GL  L  L   
Sbjct: 63  KGLTNLTSLNLGVTQVTGAGLQELKGLTNLTSLNLGSTGVTDAGLQDLKGLNKLASLDLR 122

Query: 209 --ELSD-------------------TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
             E++D                   T+V + GL+ L GL NL S++L  T ++D  L++L
Sbjct: 123 GTEVTDVGLQELKGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTRVTDVGLQEL 182

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
            GL++L SL+L   ++TDTGL  L  LT LT LDLF  ++TD G   L     L SL++ 
Sbjct: 183 KGLNNLASLDLRDTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLS 242

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
             G+T  G+  +K  + L LL+LS    +TD  L  + GLT L SL++  +R+T  GL+ 
Sbjct: 243 RTGVTGTGLIELKSFTKLALLDLS-GTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLKE 301

Query: 368 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           LK L +L SL L   + T   ++ L    L NL S  
Sbjct: 302 LKGLTSLTSLHLSGTRTTDAGLQELNG--LTNLTSLH 336


>gi|452822896|gb|EME29911.1| leucine-rich repeat family protein [Galdieria sulphuraria]
          Length = 588

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 144/396 (36%), Positives = 229/396 (57%), Gaps = 2/396 (0%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLE 61
           ++L+GL  L  L  +    IT++G+   A L NL +LD+E+C+ +    +  L  L KLE
Sbjct: 177 QHLAGLKYLKVLVLKSCKQITSEGLSYLANLHNLTRLDIEQCSEVSDSFLQSLNRLTKLE 236

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
             N  WC  ++D  +  LS    ++ L IS ++V+ +   +L G+ +L +L + G   + 
Sbjct: 237 DFNCAWCFRLSDEGLTILSNFHRMRYLNISKTRVSQNFGRFLPGMPRLRVLKVAGTGFSD 296

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN 180
                L  L SL  L++  C + D        +  ++ LNLG+ +I++  + ++L  +  
Sbjct: 297 RDAQYLRGLYSLRELDVEGCSVGDPFLATIYALPRIRKLNLGYTKISERGVSLYLGNMLK 356

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L+ LNLDSC IGD  + +L+ L  LKCL+L+DT V SSGL  L+ LT+LE++ L++T +S
Sbjct: 357 LQYLNLDSCLIGDFAVEHLSRLEQLKCLDLTDTTVSSSGLSGLANLTSLETLILAYTSVS 416

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           +  L  L  L+ L+SL+LD R I+D GLA L  L  L HLDLFGA++TD+G  ++     
Sbjct: 417 NSGLEHLKNLTKLESLSLDTRGISDDGLAYLKKLKHLKHLDLFGAKVTDNGLRHISEIST 476

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L SLE+C GG+TDAG++ I  L +L  LNLSQN  +TD  L  +S L+ L SLN+S + +
Sbjct: 477 LESLEVCAGGVTDAGLESIGKLRALRTLNLSQNHRITDAGLIHLSCLSHLTSLNLSYTNV 536

Query: 361 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 396
                  ++   +LR + +E C ++     RL++  
Sbjct: 537 GDGICSLVQKCPSLRMIGIERCGLSIAAKIRLRTHQ 572



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 171/335 (51%), Gaps = 28/335 (8%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKL 109
           L  L+ L  L  L +K C  I+D  +  L+ + +L  L ++ C ++T  G+ +L GL+ L
Sbjct: 126 LFYLQNLSTLSRLELKDCKFISDEGLSNLAEIVSLTYLDLAGCVQITSEGLQHLAGLKYL 185

Query: 110 TLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
            +L L+ C  +T+  L  L+ L +L  L++ +C                       +E++
Sbjct: 186 KVLVLKSCKQITSEGLSYLANLHNLTRLDIEQC-----------------------SEVS 222

Query: 169 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 227
           D  L  L  LT LE  N   C  + DEGL  L+    ++ L +S T+V  +  R L G+ 
Sbjct: 223 DSFLQSLNRLTKLEDFNCAWCFRLSDEGLTILSNFHRMRYLNISKTRVSQNFGRFLPGMP 282

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
            L  + ++ TG SD   + L GL SL+ L+++   + D  LA + +L  +  L+L   +I
Sbjct: 283 RLRVLKVAGTGFSDRDAQYLRGLYSLRELDVEGCSVGDPFLATIYALPRIRKLNLGYTKI 342

Query: 288 TDSGAA-YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           ++ G + YL N   L+ L +    + D  V+H+  L  L  L+L+ +  ++   L  ++ 
Sbjct: 343 SERGVSLYLGNMLKLQYLNLDSCLIGDFAVEHLSRLEQLKCLDLT-DTTVSSSGLSGLAN 401

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           LT L +L ++ + ++++GL HLK L  L SL+L++
Sbjct: 402 LTSLETLILAYTSVSNSGLEHLKNLTKLESLSLDT 436



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 4/107 (3%)

Query: 286 RITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
           ++T+    YL+N   L  LE+  C   ++D G+ ++ ++ SLT L+L+    +T + L+ 
Sbjct: 120 QVTNDWLFYLQNLSTLSRLELKDCKF-ISDEGLSNLAEIVSLTYLDLAGCVQITSEGLQH 178

Query: 344 ISGLTGLVSLNV-SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 389
           ++GL  L  L + S  +ITS GL +L  L NL  L +E C   ++  
Sbjct: 179 LAGLKYLKVLVLKSCKQITSEGLSYLANLHNLTRLDIEQCSEVSDSF 225


>gi|303286333|ref|XP_003062456.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455973|gb|EEH53275.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 519

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 227/415 (54%), Gaps = 24/415 (5%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           ++  ++L S     N+A+T  G++  A L +L +L  ERC R+  G+ +L GL  L SLN
Sbjct: 103 MASATHLKSFFCEGNDAVTGSGVRHLASLTSLRELSFERCARLREGMCHLAGLRNLRSLN 162

Query: 65  IKWCNCITDSDM-------------KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 111
           + WC  ++  +               P S    L   +   +  T   +  L G  +L  
Sbjct: 163 LGWCGKLSAKETSRALTPFFPASASAPRSTPIELSLARTGANADTARALGQLAG--RLVA 220

Query: 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
           LN+ GC +    L  L  L +L  L+L RC++SD G  +   +  L+ LNLG+  +T++ 
Sbjct: 221 LNVSGCAMNDDALHFLGGLINLRSLSLERCRVSDVGVRQLCGLRDLRELNLGYTRVTNDG 280

Query: 172 LVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
           ++ L  LT L  +NLDS G +GD G+        L+ L +SDT VG  G+R L     L 
Sbjct: 281 VLALAPLTELRVVNLDSLGDVGDAGMEVARRWEKLESLCVSDTGVGDGGVRKLKSCARLR 340

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
            +NL +T ++D  L  L  ++SL++LNLD+R ITD G+  L +L  LT +DLFGA+I+D 
Sbjct: 341 DLNLGYTNVTDDGLEHLEDMTSLRNLNLDSRLITDDGVRHLANLGALTAIDLFGAKISDE 400

Query: 291 GAAYLRNFK---NLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISG 346
           GA+ L  FK    L  LE+CGG LT+ GVK I +    +  LN+ +N  +TD  ++ +  
Sbjct: 401 GASRL--FKCTPKLERLELCGGSLTNVGVKRIAEHCKGMKTLNIGRNAKITDDCVDDVVT 458

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSRDLPNL 400
           +  L SLN++ S+ITS G+R L  L  L SL ++ C+ V+   ++RL+ R+ P L
Sbjct: 459 MRELTSLNLAFSKITSDGVRKLAALPCLTSLAIKGCESVSLAAVERLK-REAPAL 512



 Score = 38.5 bits (88), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 9/148 (6%)

Query: 258 LDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLR-NFKNLRSLEICG----GGL 311
           LDA  +TD  LAAL  + T L+ +DL G     SG   LR NF     + I       G+
Sbjct: 38  LDANVVTDAFLAALRDVATSLSRIDLTGCDALTSGG--LRSNFPCCARMTIVNVSECAGV 95

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
            D  +  +   + L       N  +T   +  ++ LT L  L+         G+ HL  L
Sbjct: 96  DDDALAAMASATHLKSFFCEGNDAVTGSGVRHLASLTSLRELSFERCARLREGMCHLAGL 155

Query: 372 KNLRSLTLESC-KVTANDIKRLQSRDLP 398
           +NLRSL L  C K++A +  R  +   P
Sbjct: 156 RNLRSLNLGWCGKLSAKETSRALTPFFP 183


>gi|219122964|ref|XP_002181805.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407081|gb|EEC47019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 486

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 215/373 (57%), Gaps = 10/373 (2%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           +++  +G+   +    L  L L  C R+    +VN+  L  L++L++  C CITD  +  
Sbjct: 114 HSVVGRGLVVLSSSPRLHTLSLTNCRRLTDEAIVNISHLQSLQALSLDGCRCITDFSLAA 173

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSAL----GS 132
           L+ + NL+ L +S C  +T+ G+  L+ LQ+L  ++L  C  V+ A + +L+A      +
Sbjct: 174 LADMYNLRKLGLSQCDLITNEGLKALEHLQRLQEISLGWCRQVSDAGIQTLTAQPGRSSN 233

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L L RC ++D+G +   KI ++K L L ++ + D  L  L  L  LE LNLDSC IG
Sbjct: 234 LQILRLARCPITDEGVQYLGKIRNVKTLELCYSAVKDIHLTKLVNLPMLEELNLDSCPIG 293

Query: 193 D---EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
           D   +   N   L NL  L+L+D+ +   G+  ++  T L+ ++L +  IS+  LR L+ 
Sbjct: 294 DLAIQHFANHNVLPNLVSLDLADSDISDLGMVQIAKFTKLKRLSLFYCSISNRGLRHLSI 353

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           L+ L+ LNLD+R I+D GL  L  L  L  LD+F  R+TD G  YL   K L SLE+CGG
Sbjct: 354 LTELRVLNLDSRDISDDGLRHLQHLKQLKSLDIFSGRVTDLGCTYLSKIKTLESLELCGG 413

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
           G+ DAG   +  L +LT LNLSQN  +T++    ++ L+ L +LN+S++R+ ++ LR+  
Sbjct: 414 GVRDAGCASLAKLENLTSLNLSQNERITNRGAAALAALSKLKALNLSHTRVNASALRYFS 473

Query: 370 PLKNLRSLTLESC 382
            L NL+SL L  C
Sbjct: 474 GLMNLQSLALYGC 486



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 171/376 (45%), Gaps = 59/376 (15%)

Query: 21  AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           A+      A + L N   LDL    R+   GL+ L  L +LE   +  C+ +    +  L
Sbjct: 65  ALMWHPCAASSALTNTTLLDLRGSQRLTDRGLMQLHDLGRLEVAKLDNCHSVVGRGLVVL 124

Query: 80  SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLN 137
           S    L +L ++ C ++TD  I  +  LQ L  L+L+GC  +T   L +L+ + +L  L 
Sbjct: 125 SSSPRLHTLSLTNCRRLTDEAIVNISHLQSLQALSLDGCRCITDFSLAALADMYNLRKLG 184

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 196
           L++C L                       IT+E L  L+ L  L+ ++L  C  + D G+
Sbjct: 185 LSQCDL-----------------------ITNEGLKALEHLQRLQEISLGWCRQVSDAGI 221

Query: 197 VNLTGL----CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
             LT       NL+ L L+   +   G+++L  + N++++ L ++ + D  L KL  L  
Sbjct: 222 QTLTAQPGRSSNLQILRLARCPITDEGVQYLGKIRNVKTLELCYSAVKDIHLTKLVNLPM 281

Query: 253 LKSLNLDARQITDTGLAALTS---LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           L+ LNLD+  I D  +    +   L  L  LDL  + I+D G   +  F  L+ L +   
Sbjct: 282 LEELNLDSCPIGDLAIQHFANHNVLPNLVSLDLADSDISDLGMVQIAKFTKLKRLSLFYC 341

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
            +++ G++H+                         S LT L  LN+ +  I+  GLRHL+
Sbjct: 342 SISNRGLRHL-------------------------SILTELRVLNLDSRDISDDGLRHLQ 376

Query: 370 PLKNLRSLTLESCKVT 385
            LK L+SL + S +VT
Sbjct: 377 HLKQLKSLDIFSGRVT 392


>gi|307107435|gb|EFN55678.1| hypothetical protein CHLNCDRAFT_133919 [Chlorella variabilis]
          Length = 553

 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 150/391 (38%), Positives = 216/391 (55%), Gaps = 36/391 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L G+++L  LS      +TA GM    GL  L +L L+ C +I   L  L  L +LE L+
Sbjct: 142 LQGMTSLEELSLAGCELLTAVGMGHLRGLTRLRRLSLQTCHQI--SLAPLAQLRQLEQLD 199

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           + WC+ + DSD                 ++VTD G+A L  L +L  LNL G  V+   L
Sbjct: 200 VGWCSSLDDSD-----------------AQVTDHGLACLHSLGQLRALNLAGVRVSDEAL 242

Query: 125 DSL-SALGSLFYLNLNRC-QLSDDGCEKFSKIG-SLKVLNLGFNEITDECLVHLKGLTNL 181
            +L   L  L  LNL RC Q  D      S+    L+ L+LG+  ++D  L+ L GLT L
Sbjct: 243 AALLRHLPHLRALNLERCLQAGDASLAAVSQRALQLRELHLGYTAVSDRGLLLLGGLTQL 302

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L+L++C +GD GL  L+ L  ++ L+LSDT   +  +  ++ +  LE +NLSFTG++D
Sbjct: 303 HVLSLENCSVGDGGLAVLSHLTQMRQLDLSDTSASNETMSTVAAMRQLECLNLSFTGVND 362

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             L++L  LSSL+ LNLD+R  TD G+ ++  L GL  LDLFGARI D+G A L   KNL
Sbjct: 363 LGLKRLRRLSSLRCLNLDSRHFTDAGMVSVAQLAGLECLDLFGARIGDAGCASLSKLKNL 422

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           R LE+CGGG+TDAGV H+  L+ L  L+L+Q            S   G  S  + N R++
Sbjct: 423 RRLEVCGGGVTDAGVAHLVALTRLQHLSLAQ-----------ASACWG--SCTLPNYRVS 469

Query: 362 SAGLRHLKPLKNLRSLTL-ESCKVTANDIKR 391
           ++ + HL  L  L +L L ++C  T  ++ R
Sbjct: 470 NSCILHLIKLNELMALNLSQACACTTQNLHR 500



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 169/352 (48%), Gaps = 35/352 (9%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKL 109
           L +L     L  L + +C  +TD  +  L G+T+L+ L ++ C  +T  G+ +L+GL +L
Sbjct: 114 LASLGPTPHLAQLCLDYCVDLTDGGLALLQGMTSLEELSLAGCELLTAVGMGHLRGLTRL 173

Query: 110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRC--------QLSDDGCEKFSKIGSLKVLN 161
             L+L+ C   +  L  L+ L  L  L++  C        Q++D G      +G L+ LN
Sbjct: 174 RRLSLQTCHQIS--LAPLAQLRQLEQLDVGWCSSLDDSDAQVTDHGLACLHSLGQLRALN 231

Query: 162 LGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
           L    ++DE L  L + L +L +LNL+                  +CL+  D  + +   
Sbjct: 232 LAGVRVSDEALAALLRHLPHLRALNLE------------------RCLQAGDASLAAVSQ 273

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           R L     L  ++L +T +SD  L  L GL+ L  L+L+   + D GLA L+ LT +  L
Sbjct: 274 RAL----QLRELHLGYTAVSDRGLLLLGGLTQLHVLSLENCSVGDGGLAVLSHLTQMRQL 329

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
           DL     ++   + +   + L  L +   G+ D G+K ++ LSSL  LNL    + TD  
Sbjct: 330 DLSDTSASNETMSTVAAMRQLECLNLSFTGVNDLGLKRLRRLSSLRCLNLDSR-HFTDAG 388

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           +  ++ L GL  L++  +RI  AG   L  LKNLR L +    VT   +  L
Sbjct: 389 MVSVAQLAGLECLDLFGARIGDAGCASLSKLKNLRRLEVCGGGVTDAGVAHL 440


>gi|414586492|tpg|DAA37063.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
          Length = 356

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 135/174 (77%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + LSG SNLTSLS ++  A+TA+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE 
Sbjct: 178 KTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+++CN ITDSDMK LS LTNL+ LQ+S  K++  G++YL+GL KL  LNLEGC VTA 
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAV 297

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
           CL+ +S L SL  LNL+RC + D+GCE    +  LK L+LGFN+ITD CL+HLK
Sbjct: 298 CLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLK 351



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 112/219 (51%), Gaps = 4/219 (1%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-T 213
           SL  ++L  +++TD     LK  ++++SL  D C  I + GL  L+G  NL  L +    
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195

Query: 214 QVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 272
            V + G +  + L NL +++L     I+ G +         K        ITD+ +  L+
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255

Query: 273 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
            LT L  L L   +I+  G +YLR    L  L + G  +T   ++ I +L+SL LLNLS+
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSR 315

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
            C + D+  E + GLT L +L++  ++IT A L HLK +
Sbjct: 316 -CGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKVM 353



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 106/238 (44%), Gaps = 24/238 (10%)

Query: 35  NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 93
           +L+ +DL        G   LK    ++SL   +C+ I++  +K LSG +NL SL I  C+
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
            VT  G      L  L  L+LE CP     L  L  L  L  LNL  C            
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYC------------ 243

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
                      N ITD  + +L  LTNL  L L SC I   G+  L GL  L  L L   
Sbjct: 244 -----------NGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGC 292

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
            V +  L  +S L +L  +NLS  GI D     L GL+ LK+L+L   QITD  L  L
Sbjct: 293 AVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHL 350



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 132/258 (51%), Gaps = 9/258 (3%)

Query: 90  ISCSKVTDSGIAYLKG--LQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDD 146
           + C  +T++ +   +   LQ + L +  G  VT A ++ +++ G SL  ++L+   ++D 
Sbjct: 93  VECGCLTEASLGAFRDCDLQDICLGDYPG--VTDAWMEVVASQGQSLLSVDLSCSDVTDS 150

Query: 147 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 204
           G        S++ L   + ++I++  L  L G +NL SL++  C  +  EG      L N
Sbjct: 151 GFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVN 210

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQI 263
           L  L+L      + GL HL GL  LE +NL +  GI+D  ++ L+ L++L+ L L + +I
Sbjct: 211 LVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKI 270

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
           +  G++ L  L  L HL+L G  +T      +    +L  L +   G+ D G +++K L+
Sbjct: 271 SAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLT 330

Query: 324 SLTLLNLSQNCNLTDKTL 341
            L  L+L  N  +TD  L
Sbjct: 331 KLKALSLGFN-QITDACL 347



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 118/263 (44%), Gaps = 46/263 (17%)

Query: 71  ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 128
           +TD+ M+ ++    +L S+ +SCS VTDSG   LK    +  L  + C  ++   L +LS
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLS 181

Query: 129 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
              +L  L++ +C  ++ +G + F+                         L NL +L+L+
Sbjct: 182 GFSNLTSLSIKKCAAVTAEGAKAFAN------------------------LVNLVNLDLE 217

Query: 188 SCGIGDEGLVNLTG----------LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
            C   + GL++L G           CN          +  S +++LS LTNL  + LS  
Sbjct: 218 RCPKINGGLIHLKGLKKLEKLNLRYCN---------GITDSDMKYLSDLTNLRELQLSSC 268

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            IS   +  L GL  L  LNL+   +T   L  ++ L  L  L+L    I D G   L+ 
Sbjct: 269 KISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGICDEGCENLKG 328

Query: 298 FKNLRSLEICGGGLTDAGVKHIK 320
              L++L +    +TDA + H+K
Sbjct: 329 LTKLKALSLGFNQITDACLIHLK 351



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 4/162 (2%)

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-A 285
           +L S++LS + ++D     L   SS++SL  D   QI++ GL  L+  + LT L +   A
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELI 344
            +T  GA    N  NL +L++      + G+ H+K           + CN +TD  ++ +
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLK-GLKKLEKLNLRYCNGITDSDMKYL 254

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
           S LT L  L +S+ +I++ G+ +L+ L  L  L LE C VTA
Sbjct: 255 SDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTA 296



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 236 FTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 293
           + G++D  +  +A    SL S++L    +TD+G   L   + +  L   +  +I++ G  
Sbjct: 119 YPGVTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLK 178

Query: 294 YLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
            L  F NL SL I  C   +T  G K   +L +L  L+L +   +    + L        
Sbjct: 179 TLSGFSNLTSLSIKKCAA-VTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
                 + IT + +++L  L NLR L L SCK++A  +  L+
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLR 279


>gi|302853080|ref|XP_002958057.1| hypothetical protein VOLCADRAFT_99233 [Volvox carteri f.
           nagariensis]
 gi|300256635|gb|EFJ40897.1| hypothetical protein VOLCADRAFT_99233 [Volvox carteri f.
           nagariensis]
          Length = 581

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 158/429 (36%), Positives = 230/429 (53%), Gaps = 38/429 (8%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           ++ GL+ L  L  R    IT +G+   +GL  L  LDL++C RI GGL +L  L  L +L
Sbjct: 140 HVRGLTGLQELELRECELITGEGLMQLSGLTQLKTLDLDQCRRIKGGLQHLTSLRHLATL 199

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAA 122
            + WC  + DS++  L  L  L+ L+++ ++VTD G+++L  L  LT L+L GC  +T A
Sbjct: 200 RLGWCPLLGDSEVTWLRELGQLRELRLAYTQVTDVGVSHLAALTALTHLDLGGCTRLTDA 259

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----------FNEITDECL 172
               L  L +L  L+L        GC +F   G   ++ +           +  +T   L
Sbjct: 260 AAAPLQRLTALQVLSLY-------GCGQFGNAGLAMLIAVPLLSLNSLTLSYTAVTTPGL 312

Query: 173 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLTNL 229
             L  L+ L  L+LDSC +GD     L  L  L  L+LS+T VG  GL  L+     T+L
Sbjct: 313 TALSSLSRLTLLSLDSCAVGDAVCRVLRRLPRLANLDLSETSVGDGGLDALTVSGPPTSL 372

Query: 230 ESINLSFTG------------ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
             + L++T             I+D  L KL+ L  L+ L+LD+  +TD  L  +T L+ L
Sbjct: 373 THLKLTYTKVNELGMPGKCVFITDEGLSKLSLLVGLQQLDLDSGTLTDACLRHVTGLSAL 432

Query: 278 THLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           T LDLF  RITD+GA           NLRSLE CGG LTDAG  H+  L+SLT LNLSQN
Sbjct: 433 TGLDLFSCRITDAGARLLGGSGHLGGNLRSLECCGGLLTDAGAVHLARLTSLTCLNLSQN 492

Query: 334 CNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
             L D   + L + L+ L  L+++++ ITSA LR +  L  LR L++ + +VT   + +L
Sbjct: 493 ARLGDAGAQSLAASLSDLQELSLNHTNITSACLRDVAALPWLRYLSVSNTRVTDAAVAKL 552

Query: 393 QSRDLPNLV 401
           +SR  P+L+
Sbjct: 553 RSRAHPDLI 561



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 8/146 (5%)

Query: 247 LAGLSSLKSLNLDA------RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFK 299
           L+ L+  + L+LD         + +  L +L   + L  LDL G  +++D G A LR   
Sbjct: 61  LSDLTRFRELDLDTVVLVGRADVRNDRLRSLEKCSRLRSLDLTGCVQVSDVGVASLRRHG 120

Query: 300 NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
            L+ L +     LTDA + H++ L+ L  L L +   +T + L  +SGLT L +L++   
Sbjct: 121 GLQRLRLSHCVTLTDAALNHVRGLTGLQELELRECELITGEGLMQLSGLTQLKTLDLDQC 180

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKV 384
           R    GL+HL  L++L +L L  C +
Sbjct: 181 RRIKGGLQHLTSLRHLATLRLGWCPL 206


>gi|306012373|gb|ADM75240.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012405|gb|ADM75256.1| leucine rich repeat-like protein, partial [Picea sitchensis]
          Length = 137

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/135 (68%), Positives = 114/135 (84%)

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
           ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+  LN
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60

Query: 330 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 389
           LSQN +LTD  LE ISG+T LVSLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT  +I
Sbjct: 61  LSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120

Query: 390 KRLQSRDLPNLVSFR 404
           ++LQ+  LPNL   R
Sbjct: 121 RKLQATALPNLAGVR 135



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 3/135 (2%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L+ LT L  L +  +++TD G + L+  +KL  L L G  +T A + ++  L S+  LNL
Sbjct: 2   LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61

Query: 139 NR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           ++   L+D   E  S + +L  LN+    +T+  L HL+ L NL SL+L +C +    + 
Sbjct: 62  SQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEIR 121

Query: 198 NL--TGLCNLKCLEL 210
            L  T L NL  + L
Sbjct: 122 KLQATALPNLAGVRL 136



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 7/138 (5%)

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
            L +LTGL +L       T  G+S LR+      L+S+ L    I+D  ++ +  L+S+ 
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57

Query: 255 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
           SLNL     +TD  L  ++ +T L  L++   R+T++G  +LR  KNL SL +    +T 
Sbjct: 58  SLNLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116

Query: 314 AGVKHIKDLSSLTLLNLS 331
                I+ L +  L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 4/126 (3%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +L+GL++L     R    IT  G         L  L+L   +    G+ N+K L  + SL
Sbjct: 4   SLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSL 59

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           N+   + +TD  ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT   
Sbjct: 60  NLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPE 119

Query: 124 LDSLSA 129
           +  L A
Sbjct: 120 IRKLQA 125



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 3/137 (2%)

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           +L++L  L +L+L   +++D G         L+ L L    ITD  + ++K LT++ SLN
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60

Query: 186 L-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           L  +  + D  L  ++G+  L  L +S+T+V ++GL+HL  L NL S++L    ++   +
Sbjct: 61  LSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120

Query: 245 RKL--AGLSSLKSLNLD 259
           RKL    L +L  + LD
Sbjct: 121 RKLQATALPNLAGVRLD 137



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LT L  L+L    I D G   L     L+ LEL    +  +G++++  LT++ S+NL
Sbjct: 2   LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61

Query: 235 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           S  + ++DG+L  ++G+++L SLN+   ++T+ GL  L  L  LT L L   ++T
Sbjct: 62  SQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116



 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 29  AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKS 87
           A   L  L  LDL        G   L+   KL+SL +  C   ITD+ +K +  LT++ S
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLEL--CGGSITDAGVKNIKDLTSMMS 58

Query: 88  LQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           L +S  S +TD  + ++ G+  L  LN+    VT A L  L  L +L  L+L  C+++  
Sbjct: 59  LNLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWP 118

Query: 147 GCEKF 151
              K 
Sbjct: 119 EIRKL 123


>gi|306012335|gb|ADM75221.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012337|gb|ADM75222.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012341|gb|ADM75224.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012343|gb|ADM75225.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012345|gb|ADM75226.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012347|gb|ADM75227.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012349|gb|ADM75228.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012353|gb|ADM75230.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012355|gb|ADM75231.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012357|gb|ADM75232.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012361|gb|ADM75234.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012363|gb|ADM75235.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012365|gb|ADM75236.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012367|gb|ADM75237.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012369|gb|ADM75238.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012375|gb|ADM75241.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012377|gb|ADM75242.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012379|gb|ADM75243.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012383|gb|ADM75245.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012385|gb|ADM75246.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012387|gb|ADM75247.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012389|gb|ADM75248.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012393|gb|ADM75250.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012399|gb|ADM75253.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012407|gb|ADM75257.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012409|gb|ADM75258.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012411|gb|ADM75259.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012413|gb|ADM75260.1| leucine rich repeat-like protein, partial [Picea sitchensis]
          Length = 137

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 91/135 (67%), Positives = 114/135 (84%)

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
           ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+  LN
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60

Query: 330 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 389
           LSQN +LTD  LE ISG+T L+SLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT  +I
Sbjct: 61  LSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120

Query: 390 KRLQSRDLPNLVSFR 404
           ++LQ+  LPNL   R
Sbjct: 121 RKLQATALPNLAGVR 135



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 3/135 (2%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L+ LT L  L +  +++TD G + L+  +KL  L L G  +T A + ++  L S+  LNL
Sbjct: 2   LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61

Query: 139 NR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           ++   L+D   E  S + +L  LN+    +T+  L HL+ L NL SL+L +C +    + 
Sbjct: 62  SQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEIR 121

Query: 198 NL--TGLCNLKCLEL 210
            L  T L NL  + L
Sbjct: 122 KLQATALPNLAGVRL 136



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 7/138 (5%)

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
            L +LTGL +L       T  G+S LR+      L+S+ L    I+D  ++ +  L+S+ 
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57

Query: 255 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
           SLNL     +TD  L  ++ +T L  L++   R+T++G  +LR  KNL SL +    +T 
Sbjct: 58  SLNLSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116

Query: 314 AGVKHIKDLSSLTLLNLS 331
                I+ L +  L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 4/126 (3%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +L+GL++L     R    IT  G         L  L+L   +    G+ N+K L  + SL
Sbjct: 4   SLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSL 59

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           N+   + +TD  ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT   
Sbjct: 60  NLSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPE 119

Query: 124 LDSLSA 129
           +  L A
Sbjct: 120 IRKLQA 125



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 3/137 (2%)

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           +L++L  L +L+L   +++D G         L+ L L    ITD  + ++K LT++ SLN
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60

Query: 186 L-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           L  +  + D  L  ++G+  L  L +S+T+V ++GL+HL  L NL S++L    ++   +
Sbjct: 61  LSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120

Query: 245 RKL--AGLSSLKSLNLD 259
           RKL    L +L  + LD
Sbjct: 121 RKLQATALPNLAGVRLD 137



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LT L  L+L    I D G   L     L+ LEL    +  +G++++  LT++ S+NL
Sbjct: 2   LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61

Query: 235 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           S  + ++DG+L  ++G+++L SLN+   ++T+ GL  L  L  LT L L   ++T
Sbjct: 62  SQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 29  AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKS 87
           A   L  L  LDL        G   L+   KL+SL +  C   ITD+ +K +  LT++ S
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLEL--CGGSITDAGVKNIKDLTSMMS 58

Query: 88  LQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           L +S  S +TD  + ++ G+  L  LN+    VT A L  L  L +L  L+L  C+++  
Sbjct: 59  LNLSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWP 118

Query: 147 GCEKF 151
              K 
Sbjct: 119 EIRKL 123


>gi|46447560|ref|YP_008925.1| hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401201|emb|CAF24650.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 761

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 149/382 (39%), Positives = 218/382 (57%), Gaps = 12/382 (3%)

Query: 14  LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 72
           L+F     +T   + A     NL  L LE C  +   GL +L  L  L+ LN+  C  +T
Sbjct: 199 LNFSNQVYLTNAHLLALKDCKNLKALHLEACQALTDDGLEHLTLLTALQHLNLSRCKNLT 258

Query: 73  DSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSAL 130
           D+ +  L+ LT L+ L +S C+K TD+G+AYL+ L  L  L+L GC  +T A L  L+ L
Sbjct: 259 DAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITDAGLSHLTPL 318

Query: 131 GSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 188
            +L YL+L++C  L+D G      + +L+ LNL   N++TD  L HL  LT+L+ LNL S
Sbjct: 319 VALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSS 378

Query: 189 C-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLR 245
           C  + D GL +LT L  L+ L+LS   ++   GL HL+ LT L+ +NLS    I++  L 
Sbjct: 379 CKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLE 438

Query: 246 KLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRS 303
            L  L++L+ LNL    ++TD GL  LT LT L  LDL +  ++TD+G A+L     L+ 
Sbjct: 439 HLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQY 498

Query: 304 LEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRIT 361
           L++     LTDAG+ H+  L++L  L+LS    LTD  L  ++ L  L  LN+S+  ++T
Sbjct: 499 LDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLT 558

Query: 362 SAGLRHLKPLKNLRSLTLESCK 383
            AG  HL PL  L+ L L  C+
Sbjct: 559 DAGFAHLSPLTALQRLDLSYCQ 580



 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 147/391 (37%), Positives = 224/391 (57%), Gaps = 12/391 (3%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESL 63
           L  L+ L  L  R  + IT  G+     L+ L  L L +C  +   GL++LK L  L+ L
Sbjct: 290 LEILTALQHLDLRGCDKITDAGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYL 349

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTA 121
           N+  CN +TD+ ++ L+ LT+L+ L + SC K+TD+G+A+L  L  L  L+L  C  +T 
Sbjct: 350 NLSRCNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTD 409

Query: 122 ACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLT 179
             L  L+ L +L YLNL++C  +++ G E    + +L+ LNL   E +TD  L HL  LT
Sbjct: 410 RGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLT 469

Query: 180 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-F 236
            L+ L+L  C  + D G  +LT L  L+ L+LS   ++  +GL HL+ LT L+ ++LS  
Sbjct: 470 ALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNC 529

Query: 237 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAY 294
             ++D  L  L  L +L+ LNL +  ++TD G A L+ LT L  LDL +   +TD+  A+
Sbjct: 530 IKLTDDGLAHLTPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAH 589

Query: 295 LRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
           L     L+ L++     LTDAG+ H+K L+ L  LNL     LTD  L  ++ L+GL  L
Sbjct: 590 LTPLTALQRLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHLTTLSGLQHL 649

Query: 354 NVSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
           ++S+  ++T AGL HLK L +L+ L L  C+
Sbjct: 650 DLSSCEKLTDAGLVHLKLLTDLQYLNLSRCE 680



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 212/386 (54%), Gaps = 12/386 (3%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWC 68
           NL +L      A+T  G++    L  L  L+L RC  +   GL +L  L  L+ L++  C
Sbjct: 220 NLKALHLEACQALTDDGLEHLTLLTALQHLNLSRCKNLTDAGLAHLTPLTGLQYLDLSHC 279

Query: 69  NCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDS 126
           N  TD+ +  L  LT L+ L +  C K+TD+G+++L  L  L  L+L  C  +T A L  
Sbjct: 280 NKFTDAGLAYLEILTALQHLDLRGCDKITDAGLSHLTPLVALQYLSLSQCWNLTDAGLIH 339

Query: 127 LSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESL 184
           L  L +L YLNL+RC +L+D G E  + + SL+ LNL    ++TD  L HL  L  L+ L
Sbjct: 340 LKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHLTPLMALQHL 399

Query: 185 NLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISD 241
           +L  C  + D GL +L  L  L+ L LS    + ++GL HL  LT L+ +NLS    ++D
Sbjct: 400 DLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEKLTD 459

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFK 299
             L  L  L++L+ L+L    ++TD G A LT LTGL +LDL    ++TD+G A+L    
Sbjct: 460 AGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLT 519

Query: 300 NLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
            L+ L++     LTD G+ H+  L +L  LNLS    LTD     +S LT L  L++S  
Sbjct: 520 ALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYC 579

Query: 359 R-ITSAGLRHLKPLKNLRSLTLESCK 383
           + +T A L HL PL  L+ L L  C+
Sbjct: 580 QNLTDAELAHLTPLTALQRLDLRYCE 605



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 149/418 (35%), Positives = 221/418 (52%), Gaps = 37/418 (8%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLE 61
           E+L+ L+ L  L+  R   +T  G+     L  L  LDL  C +    GL  L+ L  L+
Sbjct: 238 EHLTLLTALQHLNLSRCKNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQ 297

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PV 119
            L+++ C+ ITD+ +  L+ L  L+ L +S C  +TD+G+ +LK L  L  LNL  C  +
Sbjct: 298 HLDLRGCDKITDAGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKL 357

Query: 120 TAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG 177
           T A L+ L+ L SL +LNL+ C+ L+D G    + + +L+ L+L   N++TD  L HL  
Sbjct: 358 TDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNP 417

Query: 178 LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS 235
           LT L+ LNL  C  I + GL +L  L  L+ L LS  + +  +GL HL+ LT L+ ++LS
Sbjct: 418 LTALQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLS 477

Query: 236 F-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGA 292
           +   ++D     L  L+ L+ L+L    ++TD GLA LT LT L +LDL    ++TD G 
Sbjct: 478 WCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGL 537

Query: 293 AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
           A+L     L+ L +     LTDAG  H+  L++L  L+LS   NLTD  L  ++ LT L 
Sbjct: 538 AHLTPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQ 597

Query: 352 SLNVS----------------------NSR----ITSAGLRHLKPLKNLRSLTLESCK 383
            L++                       N R    +T AGL HL  L  L+ L L SC+
Sbjct: 598 RLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHLTTLSGLQHLDLSSCE 655



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 148/420 (35%), Positives = 227/420 (54%), Gaps = 37/420 (8%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L  L+ L  L+  R N +T  G++  A L +L  L+L  C ++   GL +L  LM L+ 
Sbjct: 339 HLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHLTPLMALQH 398

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           L++  CN +TD  +  L+ LT L+ L +S C  +T++G+ +L  L  L  LNL  C  +T
Sbjct: 399 LDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEKLT 458

Query: 121 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 178
            A L+ L+ L +L  L+L+ C +L+D G    + +  L+ L+L   N++TD  L HL  L
Sbjct: 459 DAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPL 518

Query: 179 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 236
           T L+ L+L +C  + D+GL +LT L  L+ L LS   ++  +G  HLS LT L+ ++LS+
Sbjct: 519 TALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSY 578

Query: 237 -TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAA 293
              ++D  L  L  L++L+ L+L     +TD GL  L  LT L +L+L G   +TD+G A
Sbjct: 579 CQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLA 638

Query: 294 YLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ-------------------- 332
           +L     L+ L++     LTDAG+ H+K L+ L  LNLS+                    
Sbjct: 639 HLTTLSGLQHLDLSSCEKLTDAGLVHLKLLTDLQYLNLSRCENLTDEGLALLTPLTALQH 698

Query: 333 ----NC-NLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTA 386
                C NLTD  L  ++ LTGL  L++S    +T AGL HLK L  L+ L L    ++ 
Sbjct: 699 LKLRYCINLTDAGLAHLTPLTGLQRLDLSQCWNLTDAGLIHLKLLTALQHLNLSDTNISP 758



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 194/346 (56%), Gaps = 12/346 (3%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           K+E LN      +T++ +  L    NLK+L + +C  +TD G+ +L  L  L  LNL  C
Sbjct: 195 KIERLNFSNQVYLTNAHLLALKDCKNLKALHLEACQALTDDGLEHLTLLTALQHLNLSRC 254

Query: 118 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 174
             +T A L  L+ L  L YL+L+ C + +D G      + +L+ L+L G ++ITD  L H
Sbjct: 255 KNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITDAGLSH 314

Query: 175 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 232
           L  L  L+ L+L  C  + D GL++L  L  L+ L LS   ++  +GL HL+ LT+L+ +
Sbjct: 315 LTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHL 374

Query: 233 NLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGA-RITD 289
           NLS    ++D  L  L  L +L+ L+L    ++TD GL  L  LT L +L+L     IT+
Sbjct: 375 NLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITN 434

Query: 290 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
           +G  +L     L+ L +     LTDAG++H+  L++L  L+LS    LTD     ++ LT
Sbjct: 435 AGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLT 494

Query: 349 GLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 392
           GL  L++S+ +++T AGL HL PL  L+ L L +C K+T + +  L
Sbjct: 495 GLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL 540


>gi|306012339|gb|ADM75223.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012351|gb|ADM75229.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012359|gb|ADM75233.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012371|gb|ADM75239.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012381|gb|ADM75244.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012391|gb|ADM75249.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012395|gb|ADM75251.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012397|gb|ADM75252.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012401|gb|ADM75254.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012403|gb|ADM75255.1| leucine rich repeat-like protein, partial [Picea sitchensis]
          Length = 137

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 92/135 (68%), Positives = 114/135 (84%)

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
           ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+  LN
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60

Query: 330 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 389
           LSQN +LTD  LE ISG+T LVSLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT  +I
Sbjct: 61  LSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120

Query: 390 KRLQSRDLPNLVSFR 404
           ++LQ+  LPNL   R
Sbjct: 121 RKLQATALPNLAGVR 135



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 3/135 (2%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L+ LT L  L +  +++TD G + L+  +KL  L L G  +T A + ++  L S+  LNL
Sbjct: 2   LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61

Query: 139 NR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           ++   L+D   E  S + +L  LN+    +T+  L HL+ L NL SL+L +C +    + 
Sbjct: 62  SQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEIR 121

Query: 198 NL--TGLCNLKCLEL 210
            L  T L NL  + L
Sbjct: 122 KLQATALPNLAGVRL 136



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%)

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
            L +LTGL +L       T  G+S LR+      L+S+ L    I+D  ++ +  L+S+ 
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57

Query: 255 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
           SLNL     +TD  L +++ +T L  L++   R+T++G  +LR  KNL SL +    +T 
Sbjct: 58  SLNLSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116

Query: 314 AGVKHIKDLSSLTLLNLS 331
                I+ L +  L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 4/126 (3%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +L+GL++L     R    IT  G         L  L+L   +    G+ N+K L  + SL
Sbjct: 4   SLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSL 59

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           N+   + +TD  ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT   
Sbjct: 60  NLSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPE 119

Query: 124 LDSLSA 129
           +  L A
Sbjct: 120 IRKLQA 125



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 3/137 (2%)

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           +L++L  L +L+L   +++D G         L+ L L    ITD  + ++K LT++ SLN
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60

Query: 186 L-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           L  +  + D  L +++G+  L  L +S+T+V ++GL+HL  L NL S++L    ++   +
Sbjct: 61  LSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120

Query: 245 RKL--AGLSSLKSLNLD 259
           RKL    L +L  + LD
Sbjct: 121 RKLQATALPNLAGVRLD 137



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LT L  L+L    I D G   L     L+ LEL    +  +G++++  LT++ S+NL
Sbjct: 2   LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61

Query: 235 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           S  + ++DG+L  ++G+++L SLN+   ++T+ GL  L  L  LT L L   ++T
Sbjct: 62  SQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 29  AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKS 87
           A   L  L  LDL        G   L+   KL+SL +  C   ITD+ +K +  LT++ S
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLEL--CGGSITDAGVKNIKDLTSMMS 58

Query: 88  LQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           L +S  S +TD  +  + G+  L  LN+    VT A L  L  L +L  L+L  C+++  
Sbjct: 59  LNLSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWP 118

Query: 147 GCEKF 151
              K 
Sbjct: 119 EIRKL 123


>gi|406836026|ref|ZP_11095620.1| leucine-rich repeat-containing protein [Schlesneria paludicola DSM
           18645]
          Length = 586

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/374 (36%), Positives = 203/374 (54%), Gaps = 4/374 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           ++ L NLT+L    N  I+A G+K+   L +L KL+L   +    GL  L  L  L++LN
Sbjct: 215 VAALRNLTTLELW-NTPISADGLKSLGTLTDLTKLNLGFTSLDDTGLAELATLTNLKALN 273

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +     +TD+ +  LS + NL +L ++ +++TD+G+  +   + L  L+LEG  +T   L
Sbjct: 274 LMQTG-VTDTGLSSLSQIKNLTNLNLNDTQITDAGMVAIARHKDLNELHLEGTRLTDVGL 332

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            +L  LG L  L + +  ++D G E+ +    LK+L LG  +++DE L  L GL +L+SL
Sbjct: 333 RALKTLGELDVLQIGKTAVTDAGVEELAGFKHLKILRLGSTKVSDEGLKSLLGLEHLQSL 392

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
            L   GI D G   L  L  L  L+L  T V   G+R L GL+NLE ++L  T ISD  +
Sbjct: 393 GLGGTGITDVGAKQLASLTTLTGLDLDATAVTDEGVRELGGLSNLEYLSLISTKISDDGV 452

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
             L     LK L L   QI+D GL  L  L+ LT L L   ++TD G   L+N K+L+ L
Sbjct: 453 SGLGAFKKLKMLFLHNNQISDEGLKGLNDLSQLTTLYLSMTQVTDVGMKELKNLKHLKDL 512

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
            +C   +TDAG+K +  LS L +L + +N  +TD  LE ++    L  L +   R + AG
Sbjct: 513 VLCDTQITDAGLKELTGLSELNVLVI-RNVAVTDACLEHLTSFKNLTHLCIDVHRFSEAG 571

Query: 365 LRHLK-PLKNLRSL 377
           L   K  + N+R L
Sbjct: 572 LNAFKTSMPNVRVL 585



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 198/381 (51%), Gaps = 3/381 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS L NL++++      I   G+   +GL NL  L L      +  L  +  L  L +L 
Sbjct: 167 LSVLENLSTINLS-TTKIDGSGLADLSGLKNLKTLVLSHSPITNEALAGVAALRNLTTLE 225

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           + W   I+   +K L  LT+L  L +  + + D+G+A L  L  L  LNL    VT   L
Sbjct: 226 L-WNTPISADGLKSLGTLTDLTKLNLGFTSLDDTGLAELATLTNLKALNLMQTGVTDTGL 284

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            SLS + +L  LNLN  Q++D G    ++   L  L+L    +TD  L  LK L  L+ L
Sbjct: 285 SSLSQIKNLTNLNLNDTQITDAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVL 344

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
            +    + D G+  L G  +LK L L  T+V   GL+ L GL +L+S+ L  TGI+D   
Sbjct: 345 QIGKTAVTDAGVEELAGFKHLKILRLGSTKVSDEGLKSLLGLEHLQSLGLGGTGITDVGA 404

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           ++LA L++L  L+LDA  +TD G+  L  L+ L +L L   +I+D G + L  FK L+ L
Sbjct: 405 KQLASLTTLTGLDLDATAVTDEGVRELGGLSNLEYLSLISTKISDDGVSGLGAFKKLKML 464

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
            +    ++D G+K + DLS LT L LS    +TD  ++ +  L  L  L + +++IT AG
Sbjct: 465 FLHNNQISDEGLKGLNDLSQLTTLYLSM-TQVTDVGMKELKNLKHLKDLVLCDTQITDAG 523

Query: 365 LRHLKPLKNLRSLTLESCKVT 385
           L+ L  L  L  L + +  VT
Sbjct: 524 LKELTGLSELNVLVIRNVAVT 544



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 132/401 (32%), Positives = 211/401 (52%), Gaps = 5/401 (1%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L  L+ LTSL+ R   AI+  G+   + +  L  L+L        GL  L  L  L +
Sbjct: 93  KELRKLNALTSLNLRYT-AISDVGLSELSEMSKLDTLNLSATQISDAGLDKLLALRNLTA 151

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           +++     ITDS +KPLS L NL ++ +S +K+  SG+A L GL+ L  L L   P+T  
Sbjct: 152 IDLSET-AITDSALKPLSVLENLSTINLSTTKIDGSGLADLSGLKNLKTLVLSHSPITNE 210

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L  ++AL +L  L L    +S DG +    +  L  LNLGF  + D  L  L  LTNL+
Sbjct: 211 ALAGVAALRNLTTLELWNTPISADGLKSLGTLTDLTKLNLGFTSLDDTGLAELATLTNLK 270

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           +LNL   G+ D GL +L+ + NL  L L+DTQ+  +G+  ++   +L  ++L  T ++D 
Sbjct: 271 ALNLMQTGVTDTGLSSLSQIKNLTNLNLNDTQITDAGMVAIARHKDLNELHLEGTRLTDV 330

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            LR L  L  L  L +    +TD G+  L     L  L L   +++D G   L   ++L+
Sbjct: 331 GLRALKTLGELDVLQIGKTAVTDAGVEELAGFKHLKILRLGSTKVSDEGLKSLLGLEHLQ 390

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SL + G G+TD G K +  L++LT L+L     +TD+ +  + GL+ L  L++ +++I+ 
Sbjct: 391 SLGLGGTGITDVGAKQLASLTTLTGLDLDATA-VTDEGVRELGGLSNLEYLSLISTKISD 449

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
            G+  L   K L+ L L + +++   +K L   DL  L + 
Sbjct: 450 DGVSGLGAFKKLKMLFLHNNQISDEGLKGLN--DLSQLTTL 488



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 190/336 (56%), Gaps = 2/336 (0%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           +LESL++     ITD  +K L  L  L SL +  + ++D G++ L  + KL  LNL    
Sbjct: 76  RLESLDLSNTQ-ITDLGLKELRKLNALTSLNLRYTAISDVGLSELSEMSKLDTLNLSATQ 134

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           ++ A LD L AL +L  ++L+   ++D   +  S + +L  +NL   +I    L  L GL
Sbjct: 135 ISDAGLDKLLALRNLTAIDLSETAITDSALKPLSVLENLSTINLSTTKIDGSGLADLSGL 194

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            NL++L L    I +E L  +  L NL  LEL +T + + GL+ L  LT+L  +NL FT 
Sbjct: 195 KNLKTLVLSHSPITNEALAGVAALRNLTTLELWNTPISADGLKSLGTLTDLTKLNLGFTS 254

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           + D  L +LA L++LK+LNL    +TDTGL++L+ +  LT+L+L   +ITD+G   +   
Sbjct: 255 LDDTGLAELATLTNLKALNLMQTGVTDTGLSSLSQIKNLTNLNLNDTQITDAGMVAIARH 314

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
           K+L  L + G  LTD G++ +K L  L +L + +   +TD  +E ++G   L  L + ++
Sbjct: 315 KDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTA-VTDAGVEELAGFKHLKILRLGST 373

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
           +++  GL+ L  L++L+SL L    +T    K+L S
Sbjct: 374 KVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLAS 409



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/382 (32%), Positives = 200/382 (52%), Gaps = 2/382 (0%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 70
           +  +SF  N     + +   + L  L  LDL        GL  L+ L  L SLN+++   
Sbjct: 52  IVGISFAGNARFNDRYVHLISPLGRLESLDLSNTQITDLGLKELRKLNALTSLNLRYT-A 110

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I+D  +  LS ++ L +L +S ++++D+G+  L  L+ LT ++L    +T + L  LS L
Sbjct: 111 ISDVGLSELSEMSKLDTLNLSATQISDAGLDKLLALRNLTAIDLSETAITDSALKPLSVL 170

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            +L  +NL+  ++   G    S + +LK L L  + IT+E L  +  L NL +L L +  
Sbjct: 171 ENLSTINLSTTKIDGSGLADLSGLKNLKTLVLSHSPITNEALAGVAALRNLTTLELWNTP 230

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           I  +GL +L  L +L  L L  T +  +GL  L+ LTNL+++NL  TG++D  L  L+ +
Sbjct: 231 ISADGLKSLGTLTDLTKLNLGFTSLDDTGLAELATLTNLKALNLMQTGVTDTGLSSLSQI 290

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
            +L +LNL+  QITD G+ A+     L  L L G R+TD G   L+    L  L+I    
Sbjct: 291 KNLTNLNLNDTQITDAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTA 350

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           +TDAGV+ +     L +L L  +  ++D+ L+ + GL  L SL +  + IT  G + L  
Sbjct: 351 VTDAGVEELAGFKHLKILRLG-STKVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLAS 409

Query: 371 LKNLRSLTLESCKVTANDIKRL 392
           L  L  L L++  VT   ++ L
Sbjct: 410 LTTLTGLDLDATAVTDEGVREL 431



 Score = 37.7 bits (86), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLS--QNCNLTDKTLELISGLTGLVSLNVSNS 358
           ++ LE+ GG      ++   DL    ++ +S   N    D+ + LIS L  L SL++SN+
Sbjct: 31  VKKLELLGGK-----IERNADLPGQPIVGISFAGNARFNDRYVHLISPLGRLESLDLSNT 85

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVT 385
           +IT  GL+ L+ L  L SL L    ++
Sbjct: 86  QITDLGLKELRKLNALTSLNLRYTAIS 112


>gi|168698161|ref|ZP_02730438.1| hypothetical protein GobsU_01477 [Gemmata obscuriglobus UQM 2246]
          Length = 417

 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 127/361 (35%), Positives = 201/361 (55%), Gaps = 10/361 (2%)

Query: 25  QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 84
            G+K  AGL  L  L+L        G+  L G   L +LN+ +   +TD  +K L+G   
Sbjct: 64  AGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSF-TTLTDVGVKELAGFKA 122

Query: 85  LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-L 143
           L +L+++ + VTD+G+  L GL+ LT L L G  VT A +  L++L  L  L L   + +
Sbjct: 123 LTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLGLFAAKAV 182

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
           +D G ++ + + +L  L LG  ++TD  +  L GL  L +L+L   G+ D G+  L GL 
Sbjct: 183 TDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGVKELAGLK 242

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
            L  L+L +T V  +G++ L+GL  L ++NL    ++D  +++LAGL +L +LNL   ++
Sbjct: 243 ALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLNLGGTKV 302

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
           TDTGL  L     LT LDL    +TD+G   L     L  L++ G  LTDAGVK +  L+
Sbjct: 303 TDTGLKELAGFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTDAGVKELAPLT 362

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           +LT+L L +   +TD  L+ ++GL  L +L + N+++T AG++ L       +  L  CK
Sbjct: 363 NLTMLYLGET-GVTDAGLKELAGLKNLTALFLFNTKVTDAGVKEL-------TAALPKCK 414

Query: 384 V 384
           +
Sbjct: 415 I 415



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 187/357 (52%), Gaps = 25/357 (7%)

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
           +   ++D+ +K L+GL  L +L +  +KVTD G+  L G + LT LNL    +T   +  
Sbjct: 57  YACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDVGVKE 116

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           L+   +L  L LN   ++D G ++ + + +L  L LG  ++TD  +  L  L  L  L L
Sbjct: 117 LAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLGL 176

Query: 187 DSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
            +   + D G+  L GL  L  LEL  T+V  +G++ L+GL  L +++L +TG++D  ++
Sbjct: 177 FAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGVK 236

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
           +LAGL +L  L+L    +TD G+  L  L  LT L+L GA++TD+G   L   K L +L 
Sbjct: 237 ELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLN 296

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLS-----------------------QNCNLTDKTLE 342
           + G  +TD G+K +    +LT L+LS                           LTD  ++
Sbjct: 297 LGGTKVTDTGLKELAGFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTDAGVK 356

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
            ++ LT L  L +  + +T AGL+ L  LKNL +L L + KVT   +K L +  LP 
Sbjct: 357 ELAPLTNLTMLYLGETGVTDAGLKELAGLKNLTALFLFNTKVTDAGVKELTAA-LPK 412



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 146/257 (56%), Gaps = 2/257 (0%)

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           L  C LSD G ++ + + +L  LNLG  ++TD  +  L G   L +LNL    + D G+ 
Sbjct: 56  LYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDVGVK 115

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
            L G   L  LEL+ T V  +G++ L+GL  L ++ L  T ++D  +++LA L  L  L 
Sbjct: 116 ELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLG 175

Query: 258 L-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
           L  A+ +TD G+  L  L  LT L+L   ++TD+G   L   K L +L++   G+TDAGV
Sbjct: 176 LFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGV 235

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
           K +  L +L++L+L  N  +TD  ++ ++GL  L +LN+  +++T AG++ L  LK L +
Sbjct: 236 KELAGLKALSVLDLG-NTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALST 294

Query: 377 LTLESCKVTANDIKRLQ 393
           L L   KVT   +K L 
Sbjct: 295 LNLGGTKVTDTGLKELA 311



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 173/318 (54%), Gaps = 3/318 (0%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L+G   LT+L+      +T  G+K  AG   L  L+L        G+  L GL  L +
Sbjct: 91  KELAGFKALTTLNLSFTT-LTDVGVKELAGFKALTTLELNYTDVTDAGVKELAGLKALTT 149

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           L +     +TD+ +K L+ L  L  L +  +K VTD+G+  L GL+ LT L L    VT 
Sbjct: 150 LGLGGTK-VTDAGVKELASLKELSVLGLFAAKAVTDAGVKELAGLKALTTLELGLTKVTD 208

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           A +  L+ L +L  L+L+   ++D G ++ + + +L VL+LG   +TD  +  L GL  L
Sbjct: 209 AGVKELAGLKALTTLDLHYTGVTDAGVKELAGLKALSVLDLGNTGVTDAGVKELAGLKAL 268

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            +LNL    + D G+  L GL  L  L L  T+V  +GL+ L+G   L +++LSFT ++D
Sbjct: 269 TTLNLGGAKVTDAGVKELAGLKALSTLNLGGTKVTDTGLKELAGFKALTTLDLSFTTLTD 328

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             +++LAGL++L  L+L    +TD G+  L  LT LT L L    +TD+G   L   KNL
Sbjct: 329 AGVKELAGLTALTLLDLSGTTLTDAGVKELAPLTNLTMLYLGETGVTDAGLKELAGLKNL 388

Query: 302 RSLEICGGGLTDAGVKHI 319
            +L +    +TDAGVK +
Sbjct: 389 TALFLFNTKVTDAGVKEL 406



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/279 (33%), Positives = 150/279 (53%), Gaps = 2/279 (0%)

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           L  CP++ A +  L+ L +L  LNL   +++D G ++ +   +L  LNL F  +TD  + 
Sbjct: 56  LYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDVGVK 115

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L G   L +L L+   + D G+  L GL  L  L L  T+V  +G++ L+ L  L  + 
Sbjct: 116 ELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLG 175

Query: 234 L-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
           L +   ++D  +++LAGL +L +L L   ++TD G+  L  L  LT LDL    +TD+G 
Sbjct: 176 LFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGV 235

Query: 293 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
             L   K L  L++   G+TDAGVK +  L +LT LNL     +TD  ++ ++GL  L +
Sbjct: 236 KELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLG-GAKVTDAGVKELAGLKALST 294

Query: 353 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           LN+  +++T  GL+ L   K L +L L    +T   +K 
Sbjct: 295 LNLGGTKVTDTGLKELAGFKALTTLDLSFTTLTDAGVKE 333



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 151/272 (55%), Gaps = 3/272 (1%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLE 61
           + L+GL  LT+L       +T  G+K  A L  L  L L     +   G+  L GL  L 
Sbjct: 139 KELAGLKALTTLGLGGTK-VTDAGVKELASLKELSVLGLFAAKAVTDAGVKELAGLKALT 197

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +L +     +TD+ +K L+GL  L +L +  + VTD+G+  L GL+ L++L+L    VT 
Sbjct: 198 TLELGLTK-VTDAGVKELAGLKALTTLDLHYTGVTDAGVKELAGLKALSVLDLGNTGVTD 256

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           A +  L+ L +L  LNL   +++D G ++ + + +L  LNLG  ++TD  L  L G   L
Sbjct: 257 AGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLNLGGTKVTDTGLKELAGFKAL 316

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            +L+L    + D G+  L GL  L  L+LS T +  +G++ L+ LTNL  + L  TG++D
Sbjct: 317 TTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTDAGVKELAPLTNLTMLYLGETGVTD 376

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
             L++LAGL +L +L L   ++TD G+  LT+
Sbjct: 377 AGLKELAGLKNLTALFLFNTKVTDAGVKELTA 408



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/212 (35%), Positives = 118/212 (55%), Gaps = 2/212 (0%)

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           S+ L +C + D G+  L GL  L  L L  T+V   G++ L+G   L ++NLSFT ++D 
Sbjct: 53  SVFLYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDV 112

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            +++LAG  +L +L L+   +TD G+  L  L  LT L L G ++TD+G   L + K L 
Sbjct: 113 GVKELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELS 172

Query: 303 SLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
            L +     +TDAGVK +  L +LT L L     +TD  ++ ++GL  L +L++  + +T
Sbjct: 173 VLGLFAAKAVTDAGVKELAGLKALTTLELGLT-KVTDAGVKELAGLKALTTLDLHYTGVT 231

Query: 362 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
            AG++ L  LK L  L L +  VT   +K L 
Sbjct: 232 DAGVKELAGLKALSVLDLGNTGVTDAGVKELA 263



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 1/113 (0%)

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
           L+   ++D+G   L   K L +L +    +TD GVK +    +LT LNLS    LTD  +
Sbjct: 56  LYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFT-TLTDVGV 114

Query: 342 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
           + ++G   L +L ++ + +T AG++ L  LK L +L L   KVT   +K L S
Sbjct: 115 KELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELAS 167


>gi|46447549|ref|YP_008914.1| hypothetical protein pc1915 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401190|emb|CAF24639.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 683

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 156/403 (38%), Positives = 232/403 (57%), Gaps = 16/403 (3%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESL 63
           L+GL +L +LS+ RN  +T  G+   A L  L  LDL  C  +   GL +L  L  L+ L
Sbjct: 273 LTGLQHL-NLSWCRN--LTDAGLAHLAPLTALQYLDLSHCRNLTDTGLAHLTPLTALQHL 329

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTA 121
           +++ C  ITD+ +  L+ LT L++L +S C  +TD+G+AYL  L  L  LNL  C  +T 
Sbjct: 330 DLRVCKNITDAGLAHLAPLTALQNLDLSDCGHLTDAGLAYLTPLTALQHLNLYFCFNLTD 389

Query: 122 ACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 179
           A L  L  L +L  L L++C  L+D G    + + +L+ LNL    ++TD  L HL  LT
Sbjct: 390 AGLVHLRPLTALQTLGLSQCWNLTDTGLAHLTPLTALQHLNLSRCYKLTDAGLAHLTPLT 449

Query: 180 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF- 236
            L+ LNL  C  + D+GL +L  L  L+ L LS   ++  +GL HL+ LT L+ +NLS  
Sbjct: 450 ALQHLNLSYCENLTDDGLAHLAPLTALQYLRLSQCWKLTDAGLAHLTPLTALQHLNLSRC 509

Query: 237 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAY 294
             ++D  L +L  L++L+ L+L     +TD GLA LT L+GL HL L   + +TD+G A+
Sbjct: 510 YKLTDAGLARLTPLTALQHLDLKYCINLTDAGLARLTPLSGLQHLALTNCKYLTDAGLAH 569

Query: 295 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
           L     L+ L +     LTD G+ H+  L++L  L+LS+  +LTD  L  ++ LTGL  L
Sbjct: 570 LTLLTALQYLALANCKNLTDVGLAHLTPLTALQHLDLSECRHLTDAGLAHLTPLTGLQHL 629

Query: 354 NVSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 394
           N+S  R +T AGL HL PL  L+ L L  C ++T + + R ++
Sbjct: 630 NLSWCRNLTDAGLAHLSPLSVLQHLALSQCSRLTDDGLDRFKT 672



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 130/238 (54%), Gaps = 29/238 (12%)

Query: 157 LKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ 214
           LKVL L G   +TD  L HL  LT L+ LNL  C  + D GL +L  L  L+ L+LS  +
Sbjct: 251 LKVLYLQGCRNLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHLAPLTALQYLDLSHCR 310

Query: 215 -VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL 271
            +  +GL HL+ LT L+ ++L     I+D  L  LA L++L++L+L D   +TD GLA L
Sbjct: 311 NLTDTGLAHLTPLTALQHLDLRVCKNITDAGLAHLAPLTALQNLDLSDCGHLTDAGLAYL 370

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
           T LT L HL+L+                       C   LTDAG+ H++ L++L  L LS
Sbjct: 371 TPLTALQHLNLY----------------------FCFN-LTDAGLVHLRPLTALQTLGLS 407

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           Q  NLTD  L  ++ LT L  LN+S   ++T AGL HL PL  L+ L L  C+   +D
Sbjct: 408 QCWNLTDTGLAHLTPLTALQHLNLSRCYKLTDAGLAHLTPLTALQHLNLSYCENLTDD 465


>gi|348682865|gb|EGZ22681.1| hypothetical protein PHYSODRAFT_491927 [Phytophthora sojae]
          Length = 648

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/384 (35%), Positives = 207/384 (53%), Gaps = 8/384 (2%)

Query: 25  QGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL- 82
           + +KA + L  L  L L  C ++   G+  L  + KLE L I  C  +TD+ ++  + + 
Sbjct: 267 KSLKALSELEQLTSLQLVGCRKLTDKGVKYLAKMAKLEKLRIARCRKLTDAALEDFAMMF 326

Query: 83  TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC 141
             L+ L ++  ++++  + Y+  ++ L +L + GC  +    + SLS L +L Y +   C
Sbjct: 327 PKLRELDVANCRLSEKALQYIGQIKSLEVLVIRGCQDICDDGMSSLSGLANLKYFDARHC 386

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
                   ++++   L+VL LG+    +     L+ LTNL  L L  C I   G   ++ 
Sbjct: 387 SKIHSIPTEWTQ---LEVLLLGYTAFAESDAAVLQYLTNLHELELRKCRIMKRGFQFISR 443

Query: 202 LCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
           L +L+ LEL +T +  SGL  + +   +L+++N+S T ISD     LA L  L+ L LD 
Sbjct: 444 LTHLERLELGETALTDSGLLEICNSAKSLKALNISNTEISDNGAAGLAKLKELRILRLDT 503

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
             IT+  LA L+ L  L  LDLFGA ITD+G  +L     L+ L ICGG + D GV  I 
Sbjct: 504 PGITNRALANLSFLARLERLDLFGANITDNGLMHLVPLHKLQELSICGGNIGDRGVGLIS 563

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
            L+SLT LNLSQN N+  K+L  +  LTGL  LN+SN+ I++  LRHL  LK L+SL++ 
Sbjct: 564 KLTSLTSLNLSQNRNIRTKSLFYLRALTGLRCLNLSNTGISALSLRHLSSLKELQSLSVY 623

Query: 381 SCKVTANDIKRLQSRDLPNLVSFR 404
            C ++   I  L+   LP L   R
Sbjct: 624 GCSLSQGHIDVLRE-ILPELKCLR 646


>gi|428173313|gb|EKX42216.1| hypothetical protein GUITHDRAFT_74106 [Guillardia theta CCMP2712]
          Length = 527

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 143/362 (39%), Positives = 215/362 (59%), Gaps = 4/362 (1%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLS 80
           + + G+   + L+ +  L+LER TR+   G+ +L+ L  L  LN+ W N   DS  + L 
Sbjct: 158 MASSGVSCLSQLVRMTDLNLERLTRLDSEGIESLEKLTNLRILNLGWTNADDDS-FESLR 216

Query: 81  GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLN 139
            L  LK L +     T+ G+  L  L +L  L +  C V A + L  LS+LG L  L+L+
Sbjct: 217 SLPRLKRLNVCACPFTEDGLQALCSLTQLESLRMCSCKVGATSALVELSSLGKLKLLDLS 276

Query: 140 RCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           +C+ + D   E    +  LK+L L    +TD  L +L  L +L++LNLD C + + GL  
Sbjct: 277 QCEHVGDQTLEALRGLSDLKILLLAHTRVTDIGLGYLSSLWDLKTLNLDCCHVTNGGLQT 336

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           +  L NL+ L+LSD  V SSGL  L+GLT L+S+NL  TG+SD  +  + GL++L  LNL
Sbjct: 337 IANLTNLENLDLSDNVVTSSGLALLTGLTTLKSLNLFSTGVSDAGVIHVTGLTNLVRLNL 396

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
           D+R ITD+GLA ++ LT L  LDLFGA++T  G  Y+    +L SLE+CGGGLTD  ++ 
Sbjct: 397 DSRLITDSGLACISGLTNLQELDLFGAKVTHHGTIYIGLLTSLTSLELCGGGLTDEAMRE 456

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           +K L+ +  LN+SQN +L++ +   +S ++ L SLN++ +  +S G RHL    +L SL 
Sbjct: 457 LKRLTRMRNLNVSQNESLSNGSFIPMSRMSLLTSLNIAGTNFSSDGARHLTIFTDLTSLC 516

Query: 379 LE 380
           L 
Sbjct: 517 LR 518



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 179/334 (53%), Gaps = 6/334 (1%)

Query: 36  LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCS 93
           L +LD+  C  +   G+  L+ L  L S+ ++ C  + D+ ++ +    +       +C+
Sbjct: 97  LTRLDMSNCIHVTDEGISRLRSLQSLRSIKLENCLRLGDATLEVIGELSSLSHLSVSACT 156

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 152
           ++  SG++ L  L ++T LNLE    + +  ++SL  L +L  LNL      DD  E   
Sbjct: 157 RMASSGVSCLSQLVRMTDLNLERLTRLDSEGIESLEKLTNLRILNLGWTNADDDSFESLR 216

Query: 153 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELS 211
            +  LK LN+     T++ L  L  LT LESL + SC +G    LV L+ L  LK L+LS
Sbjct: 217 SLPRLKRLNVCACPFTEDGLQALCSLTQLESLRMCSCKVGATSALVELSSLGKLKLLDLS 276

Query: 212 DTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 270
             + VG   L  L GL++L+ + L+ T ++D  L  L+ L  LK+LNLD   +T+ GL  
Sbjct: 277 QCEHVGDQTLEALRGLSDLKILLLAHTRVTDIGLGYLSSLWDLKTLNLDCCHVTNGGLQT 336

Query: 271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
           + +LT L +LDL    +T SG A L     L+SL +   G++DAGV H+  L++L  LNL
Sbjct: 337 IANLTNLENLDLSDNVVTSSGLALLTGLTTLKSLNLFSTGVSDAGVIHVTGLTNLVRLNL 396

Query: 331 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
                +TD  L  ISGLT L  L++  +++T  G
Sbjct: 397 DSRL-ITDSGLACISGLTNLQELDLFGAKVTHHG 429



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 155/323 (47%), Gaps = 54/323 (16%)

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGC-------------------PVTAAC-------LD 125
           C  VTD GI+ L+ LQ L  + LE C                      +AC       + 
Sbjct: 105 CIHVTDEGISRLRSLQSLRSIKLENCLRLGDATLEVIGELSSLSHLSVSACTRMASSGVS 164

Query: 126 SLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            LS L  +  LNL R  +L  +G E   K+ +L++LNLG+    D+    L+ L  L+ L
Sbjct: 165 CLSQLVRMTDLNLERLTRLDSEGIESLEKLTNLRILNLGWTNADDDSFESLRSLPRLKRL 224

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI-SDGS 243
           N+ +C   ++                        GL+ L  LT LES+ +    + +  +
Sbjct: 225 NVCACPFTED------------------------GLQALCSLTQLESLRMCSCKVGATSA 260

Query: 244 LRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           L +L+ L  LK L+L     + D  L AL  L+ L  L L   R+TD G  YL +  +L+
Sbjct: 261 LVELSSLGKLKLLDLSQCEHVGDQTLEALRGLSDLKILLLAHTRVTDIGLGYLSSLWDLK 320

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           +L +    +T+ G++ I +L++L  L+LS N  +T   L L++GLT L SLN+ ++ ++ 
Sbjct: 321 TLNLDCCHVTNGGLQTIANLTNLENLDLSDNV-VTSSGLALLTGLTTLKSLNLFSTGVSD 379

Query: 363 AGLRHLKPLKNLRSLTLESCKVT 385
           AG+ H+  L NL  L L+S  +T
Sbjct: 380 AGVIHVTGLTNLVRLNLDSRLIT 402


>gi|46446659|ref|YP_008024.1| hypothetical protein pc1025 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400300|emb|CAF23749.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 695

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 149/388 (38%), Positives = 206/388 (53%), Gaps = 32/388 (8%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L+ L+ L  L+   +  +T  G+   A L  L KL+L R  ++   GL +LK L  L+ 
Sbjct: 270 HLTPLTALQYLNLSASYNLTDAGLVHLAPLTALQKLNLGRYNQLTDAGLAHLKPLTALQR 329

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           L++ +C  +TD  +  L  LT L+ L +  C K+TD G+ +L+ L  L  LNL  C  T 
Sbjct: 330 LDLSFCEDLTDDGLAHLRPLTALQRLDLRYCEKLTDDGLVHLRPLTALQRLNLSNCWHTG 389

Query: 122 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 179
           A L  LS L  L +LNL  C  L+D G      +  L+ LNL + +E+TD  LVHLK LT
Sbjct: 390 AGLSHLSPLTGLQHLNLYECINLTDAGLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLT 449

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TG 238
            L+ LNL +C        NLT                 +GL HL  LT L+ +NLS+   
Sbjct: 450 GLQHLNLSNCN-------NLT----------------DAGLVHLKFLTGLQHLNLSYCDE 486

Query: 239 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 296
           ++D  L  L  L+ L+ LNL +   +TD GLA LT LTGL HLDL + +++TD G A+L+
Sbjct: 487 LTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCSKLTDDGLAHLK 546

Query: 297 NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
               L+ L +     LTDAG+ H+K L+ L  LNLS   NLTD  L  +  L  L  L +
Sbjct: 547 PLTALQCLNLSNCRNLTDAGLVHLKLLTGLQHLNLSDYKNLTDDGLIHLMPLMALRHLEL 606

Query: 356 SN-SRITSAGLRHLKPLKNLRSLTLESC 382
                +T AGL HL PL  L+ L L  C
Sbjct: 607 LGCENLTDAGLVHLTPLTALQHLNLSHC 634



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 135/335 (40%), Positives = 189/335 (56%), Gaps = 10/335 (2%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 117
           K+E LN      +TD+ +  L    NLK L +  C  +TD G+A+L  L  L  LNL   
Sbjct: 226 KIEGLNFSNNRYLTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSAS 285

Query: 118 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 174
             +T A L  L+ L +L  LNL R  QL+D G      + +L+ L+L F E +TD+ L H
Sbjct: 286 YNLTDAGLVHLAPLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAH 345

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
           L+ LT L+ L+L  C  + D+GLV+L  L  L+ L LS+     +GL HLS LT L+ +N
Sbjct: 346 LRPLTALQRLDLRYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLN 405

Query: 234 L-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDS 290
           L     ++D  L  L  L+ L+ LNL    ++TD GL  L  LTGL HL+L     +TD+
Sbjct: 406 LYECINLTDAGLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDA 465

Query: 291 GAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
           G  +L+    L+ L +     LTDAG+ H+K L+ L  LNLS   NLTD  L  ++ LTG
Sbjct: 466 GLVHLKFLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTG 525

Query: 350 LVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
           L  L++S  S++T  GL HLKPL  L+ L L +C+
Sbjct: 526 LQHLDLSYCSKLTDDGLAHLKPLTALQCLNLSNCR 560



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 137/355 (38%), Positives = 198/355 (55%), Gaps = 20/355 (5%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQ 107
             L+ LK    L+ L+++ C  +TD  +  L+ LT L+ L +S S  +TD+G+ +L  L 
Sbjct: 241 AHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSASYNLTDAGLVHLAPLT 300

Query: 108 KLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 165
            L  LNL     +T A L  L  L +L  L+L+ C+ L+DDG      + +L+ L+L + 
Sbjct: 301 ALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQRLDLRYC 360

Query: 166 E-ITDECLVHLKGLTNLESLNLDSC---GIGDEGLVNLTGLCNL---KCLELSDTQVGSS 218
           E +TD+ LVHL+ LT L+ LNL +C   G G   L  LTGL +L   +C+ L+D     +
Sbjct: 361 EKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLNLYECINLTD-----A 415

Query: 219 GLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTG 276
           GL HL  LT L+ +NLS+   ++D  L  L  L+ L+ LNL +   +TD GL  L  LTG
Sbjct: 416 GLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLVHLKFLTG 475

Query: 277 LTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 334
           L HL+L +   +TD+G  +L+    L+ L +     LTDAG+ H+  L+ L  L+LS   
Sbjct: 476 LQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCS 535

Query: 335 NLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 388
            LTD  L  +  LT L  LN+SN R +T AGL HLK L  L+ L L   K   +D
Sbjct: 536 KLTDDGLAHLKPLTALQCLNLSNCRNLTDAGLVHLKLLTGLQHLNLSDYKNLTDD 590



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 94/240 (39%), Positives = 134/240 (55%), Gaps = 9/240 (3%)

Query: 150 KFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 207
            FSK   ++ LN   N  +TD  L+ LK   NL+ L+L+ C  + D+GL +LT L  L+ 
Sbjct: 222 HFSK--KIEGLNFSNNRYLTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQY 279

Query: 208 LELSDTQ-VGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD-ARQIT 264
           L LS +  +  +GL HL+ LT L+ +NL  +  ++D  L  L  L++L+ L+L     +T
Sbjct: 280 LNLSASYNLTDAGLVHLAPLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLT 339

Query: 265 DTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
           D GLA L  LT L  LDL +  ++TD G  +LR    L+ L +     T AG+ H+  L+
Sbjct: 340 DDGLAHLRPLTALQRLDLRYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLT 399

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 382
            L  LNL +  NLTD  L  +  LTGL  LN+S    +T AGL HLK L  L+ L L +C
Sbjct: 400 GLQHLNLYECINLTDAGLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNC 459



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 4/105 (3%)

Query: 287 ITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
           +TD+    L+N KNL+   LE C   LTD G+ H+  L++L  LNLS + NLTD  L  +
Sbjct: 238 LTDAHLLILKNCKNLKVLHLEKCRA-LTDDGLAHLTPLTALQYLNLSASYNLTDAGLVHL 296

Query: 345 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           + LT L  LN+   +++T AGL HLKPL  L+ L L  C+   +D
Sbjct: 297 APLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDD 341


>gi|46447653|ref|YP_009018.1| hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401294|emb|CAF24743.1| hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 959

 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 152/418 (36%), Positives = 221/418 (52%), Gaps = 38/418 (9%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L  L +LT L   + + IT  G+     LI L  L+L  C ++   GLV+LK L+ L  
Sbjct: 386 HLDSLIDLTQLGLAKCHNITDNGLAYLRPLIALQGLNLNGCKKLTDAGLVHLKSLVTLTY 445

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS---------------------------CSKV 95
           LN+  C+ +TD+ +  L+ L  L+ L +S                           C K+
Sbjct: 446 LNLSQCDDLTDAGLAHLTPLVALQHLDLSFCCYNITDAGLAHLTPLVALQNLDLSFCYKL 505

Query: 96  TDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSK 153
           TD G+A+LK L  L  LNL  C  +T A L  L+ L +L +L+L  C  L+DDG      
Sbjct: 506 TDDGLAHLKPLVALKQLNLWACSNLTGAGLAHLTPLIALKHLDLGFCYGLTDDGLAHLKP 565

Query: 154 IGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELS 211
           + +L+ L+L G  ++TD  L HL  L  L+ LN+ SC  + D+GL +L  L  L+ L LS
Sbjct: 566 LVALQYLSLSGCKKLTDAGLAHLTSLITLQQLNISSCANLTDDGLAHLKPLIALQQLNLS 625

Query: 212 D-TQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD-ARQITDTGL 268
              ++   GL HL+ L NL  ++LS  G ++D  L  LA L +L+ L+L+    +TD GL
Sbjct: 626 SCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDAGLAHLAPLVALQQLDLNFCYNLTDAGL 685

Query: 269 AALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLT 326
           A L +L  L  L L     +TD+G A+L     L+ L + G   LT  G+ H+  L++LT
Sbjct: 686 AHLITLVALQQLYLSACGNLTDAGLAHLTPLVALQQLNLSGCKKLTGVGLAHLTSLATLT 745

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
            L+LS   NLTD  L  ++ L  L  LN+S+ +  T AGL HLKPL  L+ L+L  CK
Sbjct: 746 HLSLSACANLTDDGLAHLTTLVALTYLNLSDCNNFTGAGLTHLKPLVALQYLSLSGCK 803



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 151/403 (37%), Positives = 214/403 (53%), Gaps = 21/403 (5%)

Query: 6   SGLSNLTSL--------SFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKG 56
           +GL++LT L        SF   N IT  G+     L+ L  LDL  C ++   GL +LK 
Sbjct: 457 AGLAHLTPLVALQHLDLSFCCYN-ITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKP 515

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 115
           L+ L+ LN+  C+ +T + +  L+ L  LK L +  C  +TD G+A+LK L  L  L+L 
Sbjct: 516 LVALKQLNLWACSNLTGAGLAHLTPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLS 575

Query: 116 GCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECL 172
           GC  +T A L  L++L +L  LN++ C  L+DDG      + +L+ LNL    ++T   L
Sbjct: 576 GCKKLTDAGLAHLTSLITLQQLNISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGL 635

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLE 230
            HL  L NL  L+L  CG + D GL +L  L  L+ L+L+    +  +GL HL  L  L+
Sbjct: 636 AHLTSLVNLTHLSLSECGNLTDAGLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQ 695

Query: 231 SINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARI 287
            + LS  G ++D  L  L  L +L+ LNL   +++T  GLA LTSL  LTHL L   A +
Sbjct: 696 QLYLSACGNLTDAGLAHLTPLVALQQLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANL 755

Query: 288 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           TD G A+L     L  L +      T AG+ H+K L +L  L+LS    LTD  L  +  
Sbjct: 756 TDDGLAHLTTLVALTYLNLSDCNNFTGAGLTHLKPLVALQYLSLSGCKKLTDAGLAYLKP 815

Query: 347 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           L  L  LN+    +IT AGL HL  L  L+ L+L  CK   +D
Sbjct: 816 LVALQQLNLRGCKKITDAGLTHLMSLVALQCLSLSGCKKLTDD 858



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 139/382 (36%), Positives = 212/382 (55%), Gaps = 13/382 (3%)

Query: 14  LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCIT 72
           L+F +N ++T   + A      L  L L+ C  +   GL  L+ L+ L+ LN+  C   T
Sbjct: 321 LNFSKNASLTDAHLLALKDCKKLKVLYLQECNNLTDVGLAYLRPLITLQGLNLNSCKKFT 380

Query: 73  DSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSAL 130
           D+ +  L  L +L  L ++ C  +TD+G+AYL+ L  L  LNL GC  +T A L  L +L
Sbjct: 381 DAGLAHLDSLIDLTQLGLAKCHNITDNGLAYLRPLIALQGLNLNGCKKLTDAGLVHLKSL 440

Query: 131 GSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLD 187
            +L YLNL++C  L+D G    + + +L+ L+L F    ITD  L HL  L  L++L+L 
Sbjct: 441 VTLTYLNLSQCDDLTDAGLAHLTPLVALQHLDLSFCCYNITDAGLAHLTPLVALQNLDLS 500

Query: 188 SC-GIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSL 244
            C  + D+GL +L  L  LK L L + + +  +GL HL+ L  L+ ++L F  G++D  L
Sbjct: 501 FCYKLTDDGLAHLKPLVALKQLNLWACSNLTGAGLAHLTPLIALKHLDLGFCYGLTDDGL 560

Query: 245 RKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLR 302
             L  L +L+ L+L   +++TD GLA LTSL  L  L++   A +TD G A+L+    L+
Sbjct: 561 AHLKPLVALQYLSLSGCKKLTDAGLAHLTSLITLQQLNISSCANLTDDGLAHLKPLIALQ 620

Query: 303 SLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRI 360
            L +     LT  G+ H+  L +LT L+LS+  NLTD  L  ++ L  L  L+++    +
Sbjct: 621 QLNLSSCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDAGLAHLAPLVALQQLDLNFCYNL 680

Query: 361 TSAGLRHLKPLKNLRSLTLESC 382
           T AGL HL  L  L+ L L +C
Sbjct: 681 TDAGLAHLITLVALQQLYLSAC 702



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 150/419 (35%), Positives = 218/419 (52%), Gaps = 43/419 (10%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L  L  L  L+    + +T  G+     LI L  LDL  C  +   GL +LK L+ L+ 
Sbjct: 512 HLKPLVALKQLNLWACSNLTGAGLAHLTPLIALKHLDLGFCYGLTDDGLAHLKPLVALQY 571

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           L++  C  +TD+ +  L+ L  L+ L IS C+ +TD G+A+LK L  L  LNL  C  +T
Sbjct: 572 LSLSGCKKLTDAGLAHLTSLITLQQLNISSCANLTDDGLAHLKPLIALQQLNLSSCKKLT 631

Query: 121 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 178
              L  L++L +L +L+L+ C  L+D G    + + +L+ L+L F   +TD  L HL  L
Sbjct: 632 GVGLAHLTSLVNLTHLSLSECGNLTDAGLAHLAPLVALQQLDLNFCYNLTDAGLAHLITL 691

Query: 179 TNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD----TQVG----------------- 216
             L+ L L +CG + D GL +LT L  L+ L LS     T VG                 
Sbjct: 692 VALQQLYLSACGNLTDAGLAHLTPLVALQQLNLSGCKKLTGVGLAHLTSLATLTHLSLSA 751

Query: 217 -----SSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDA-RQITDT 266
                  GL HL+ L  L  +NLS    FTG     L  L  L +L+ L+L   +++TD 
Sbjct: 752 CANLTDDGLAHLTTLVALTYLNLSDCNNFTG---AGLTHLKPLVALQYLSLSGCKKLTDA 808

Query: 267 GLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
           GLA L  L  L  L+L G + ITD+G  +L +   L+ L + G   LTD G+ H+K L +
Sbjct: 809 GLAYLKPLVALQQLNLRGCKKITDAGLTHLMSLVALQCLSLSGCKKLTDDGLAHLKPLVA 868

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 382
           LT L+L +   LTD  L  ++ L  L  LN+S+ + +T AGL HL PL+NL  + L +C
Sbjct: 869 LTHLSLGECVKLTDDGLAHLTPLLALTHLNLSDCNNLTVAGLAHLTPLENLTYVDLNNC 927



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 183/336 (54%), Gaps = 12/336 (3%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 117
           ++E LN      +TD+ +  L     LK L +  C+ +TD G+AYL+ L  L  LNL  C
Sbjct: 317 EIERLNFSKNASLTDAHLLALKDCKKLKVLYLQECNNLTDVGLAYLRPLITLQGLNLNSC 376

Query: 118 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 174
              T A L  L +L  L  L L +C  ++D+G      + +L+ LNL G  ++TD  LVH
Sbjct: 377 KKFTDAGLAHLDSLIDLTQLGLAKCHNITDNGLAYLRPLIALQGLNLNGCKKLTDAGLVH 436

Query: 175 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD--TQVGSSGLRHLSGLTNLES 231
           LK L  L  LNL  C  + D GL +LT L  L+ L+LS     +  +GL HL+ L  L++
Sbjct: 437 LKSLVTLTYLNLSQCDDLTDAGLAHLTPLVALQHLDLSFCCYNITDAGLAHLTPLVALQN 496

Query: 232 INLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARIT 288
           ++LSF   ++D  L  L  L +LK LNL A   +T  GLA LT L  L HLDL F   +T
Sbjct: 497 LDLSFCYKLTDDGLAHLKPLVALKQLNLWACSNLTGAGLAHLTPLIALKHLDLGFCYGLT 556

Query: 289 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           D G A+L+    L+ L + G   LTDAG+ H+  L +L  LN+S   NLTD  L  +  L
Sbjct: 557 DDGLAHLKPLVALQYLSLSGCKKLTDAGLAHLTSLITLQQLNISSCANLTDDGLAHLKPL 616

Query: 348 TGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 382
             L  LN+S+  ++T  GL HL  L NL  L+L  C
Sbjct: 617 IALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSEC 652



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 172/346 (49%), Gaps = 32/346 (9%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L  L  L  L+      +T  G+     L+NL  L L  C  +   GL +L  L+ L+ 
Sbjct: 612 HLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDAGLAHLAPLVALQQ 671

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           L++ +C  +TD+ +  L  L  L+ L +S C  +TD+G+A+L  L  L  LNL GC  +T
Sbjct: 672 LDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLAHLTPLVALQQLNLSGCKKLT 731

Query: 121 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGL 178
              L  L++L +L +L+L+ C  L+DDG    + + +L  LNL   N  T   L HLK L
Sbjct: 732 GVGLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVALTYLNLSDCNNFTGAGLTHLKPL 791

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FT 237
             L+ L+L  C                   +L+D     +GL +L  L  L+ +NL    
Sbjct: 792 VALQYLSLSGCK------------------KLTD-----AGLAYLKPLVALQQLNLRGCK 828

Query: 238 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 295
            I+D  L  L  L +L+ L+L   +++TD GLA L  L  LTHL L    ++TD G A+L
Sbjct: 829 KITDAGLTHLMSLVALQCLSLSGCKKLTDDGLAHLKPLVALTHLSLGECVKLTDDGLAHL 888

Query: 296 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
                L  L +     LT AG+ H+  L +LT ++L+   N TD T
Sbjct: 889 TPLLALTHLNLSDCNNLTVAGLAHLTPLENLTYVDLNNCNNFTDVT 934



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 90/155 (58%), Gaps = 5/155 (3%)

Query: 239 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLR 296
           ++D  L  L  L +L+ LNL++ ++ TD GLA L SL  LT L L     ITD+G AYLR
Sbjct: 354 LTDVGLAYLRPLITLQGLNLNSCKKFTDAGLAHLDSLIDLTQLGLAKCHNITDNGLAYLR 413

Query: 297 NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
               L+ L + G   LTDAG+ H+K L +LT LNLSQ  +LTD  L  ++ L  L  L++
Sbjct: 414 PLIALQGLNLNGCKKLTDAGLVHLKSLVTLTYLNLSQCDDLTDAGLAHLTPLVALQHLDL 473

Query: 356 SN--SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           S     IT AGL HL PL  L++L L  C    +D
Sbjct: 474 SFCCYNITDAGLAHLTPLVALQNLDLSFCYKLTDD 508


>gi|46446910|ref|YP_008275.1| hypothetical protein pc1276 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400551|emb|CAF24000.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 667

 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 140/400 (35%), Positives = 218/400 (54%), Gaps = 34/400 (8%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWC 68
           NL +L  +  + +T  G+   A L+ L  L+L  C  +   GL +L  LM L+ LN+  C
Sbjct: 284 NLKALHLQECDKLTDAGLAHLASLMALQHLNLNGCWELTDAGLAHLASLMALQHLNLAKC 343

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDS 126
           + ITD+ +  L+ L  L+ L +SC + +TD+G+ +L+ L  LT LNL  C  +T A L  
Sbjct: 344 HKITDAGLAHLTSLVALQHLDLSCCRNLTDAGLTHLRPLVALTHLNLAKCHKITDAGLAH 403

Query: 127 LSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESL 184
           L++L +L +L+L+ C+ L+D G    + + +L+ L+L + +  T+  L HL  L  L+ L
Sbjct: 404 LTSLVALQHLDLSYCEKLTDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHL 463

Query: 185 NLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDG 242
           NL+SC    D GL +LT L  L+ L+LS  + +  +GL HL+ L  L+ ++LS++     
Sbjct: 464 NLNSCYKFTDAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYS----- 518

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNL 301
                                T+ GLA LTSL  L HLDL   R +TD+G A+L +   L
Sbjct: 519 ------------------HHFTNAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLTSLVAL 560

Query: 302 RSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SR 359
           + L++     LTDAG++H+  L +L  L+LS    LTD  L  ++ L  L  L++S+  +
Sbjct: 561 QHLDLSSCKKLTDAGLEHLTPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLDLSSCKK 620

Query: 360 ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQSRDLP 398
           +T AGL HL PL  L+ L L  C K+T   +   +S   P
Sbjct: 621 LTDAGLAHLAPLVALQHLNLNWCDKLTDAGVAHFKSSVAP 660



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 141/390 (36%), Positives = 207/390 (53%), Gaps = 34/390 (8%)

Query: 5   LSGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           L   SN +  L+F +N  +T   + A     NL  L L+ C ++   GL +L  LM L+ 
Sbjct: 253 LKHFSNEIERLNFSKNIFLTDAHLLALKNCKNLKALHLQECDKLTDAGLAHLASLMALQH 312

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           LN+  C  +TD+ +  L+ L  L+ L ++ C K+TD+G+A+L  L  L  L+L  C  +T
Sbjct: 313 LNLNGCWELTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLTSLVALQHLDLSCCRNLT 372

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
            A L  L  L +L +LNL +C                       ++ITD  L HL  L  
Sbjct: 373 DAGLTHLRPLVALTHLNLAKC-----------------------HKITDAGLAHLTSLVA 409

Query: 181 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL-SFT 237
           L+ L+L  C  + D GL +LT L  L+ L+LS +    ++GL HL+ L  L+ +NL S  
Sbjct: 410 LQHLDLSYCEKLTDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLNLNSCY 469

Query: 238 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 295
             +D  L  L  L +L+ L+L   R +TD GLA L  L  L HLDL +    T++G A+L
Sbjct: 470 KFTDAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYSHHFTNAGLAHL 529

Query: 296 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
            +   L+ L++ C   LTDAG+ H+  L +L  L+LS    LTD  LE ++ L  L  L+
Sbjct: 530 TSLVALQHLDLSCCRNLTDAGLAHLTSLVALQHLDLSSCKKLTDAGLEHLTPLVALQHLD 589

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
           +S+  ++T AGL HL PL  L+ L L SCK
Sbjct: 590 LSSCKKLTDAGLAHLAPLVALQHLDLSSCK 619


>gi|46446666|ref|YP_008031.1| hypothetical protein pc1032 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400307|emb|CAF23756.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 734

 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 142/350 (40%), Positives = 196/350 (56%), Gaps = 12/350 (3%)

Query: 43  RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 101
           R T  H  L+ LK    L+ L+ K C  +TD+ +  L+ LT L+ L +S C K+TD G+A
Sbjct: 236 RLTDAH--LLTLKNCKNLKILHFKKCWGVTDAGLAHLTPLTTLQYLDLSDCEKLTDDGLA 293

Query: 102 YLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKV 159
           +L  L  L  L+L  C  +T A L  L+ L +L +LNLNRC+ L D G    + +  L+ 
Sbjct: 294 HLTPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGLAHLTPLTGLQH 353

Query: 160 LNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVG 216
           LNL    ++TD  L HLK LT L+ LNL  C  + D GL +LT L  L+ L+LS    + 
Sbjct: 354 LNLNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNSLT 413

Query: 217 SSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL 274
            +GL HL+ LT L+ ++LS     +D  L  L  L+ L+ LNL + + +TD GLA LT L
Sbjct: 414 DAGLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPL 473

Query: 275 TGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ 332
           T L HL+L   R  TD+G A+L     L+ L++     LTD G+ H+  L+ L  L LS 
Sbjct: 474 TALQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSW 533

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
              LTD  L  ++ LT L  L++S   IT AGL HL PL  L+ L L  C
Sbjct: 534 CDKLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYC 583



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 147/426 (34%), Positives = 223/426 (52%), Gaps = 35/426 (8%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLES 62
           +L+ L+ L  L     +++T  G+     L  L  L+L RC  +   GL +L  L  L+ 
Sbjct: 294 HLTPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGLAHLTPLTGLQH 353

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 120
           LN+  C  +TD+ +  L  LT L+ L +S C K+TD+G+A+L  L  L  L+L  C  +T
Sbjct: 354 LNLNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNSLT 413

Query: 121 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGL 178
            A L  L+ L +L +L+L+ CQ  +D G    + +  L+ LNL  +  +TD  L HL  L
Sbjct: 414 DAGLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPL 473

Query: 179 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF 236
           T L+ LNL +C    D GL +LT L  L+ L+LS  + +   GL HL+ LT L+ + LS+
Sbjct: 474 TALQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSW 533

Query: 237 -TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAY 294
              ++D  L  L  L++L+ L+L   +ITD GLA LT LTGL HL L +  ++TD+G A+
Sbjct: 534 CDKLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAH 593

Query: 295 LRNFKNLRSL------EICGGGL--------------------TDAGVKHIKDLSSLTLL 328
           L     L+ L       +   GL                    TD G+ H+  L++L  L
Sbjct: 594 LTPLTTLQYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHL 653

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
            L++   LTD  L  +  L  L  L++S   IT AGL HL  L  L+ L L   ++T + 
Sbjct: 654 TLNRCEKLTDDGLAHLKPLAALQYLDLSYCEITDAGLAHLTHLMALQRLDLYGREITDDG 713

Query: 389 IKRLQS 394
           ++R ++
Sbjct: 714 LERFET 719



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 142/385 (36%), Positives = 194/385 (50%), Gaps = 62/385 (16%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           K+E+LN      +TD+ +  L    NLK L    C  VTD+G+A+L  L  L  L+L  C
Sbjct: 225 KIETLNFSENARLTDAHLLTLKNCKNLKILHFKKCWGVTDAGLAHLTPLTTLQYLDLSDC 284

Query: 118 ------------PVTA--------------ACLDSLSALGSLFYLNLNRCQ-LSDDGCEK 150
                       P+T               A L  L+ L +L +LNLNRC+ L D G   
Sbjct: 285 EKLTDDGLAHLTPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGLAH 344

Query: 151 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-------------------- 189
            + +  L+ LNL    ++TD  L HLK LT L+ LNL  C                    
Sbjct: 345 LTPLTGLQHLNLNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHL 404

Query: 190 ------GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISD 241
                  + D GL +LT L  L+ L+LSD Q    +GL HL+ LT L+ +NLS +  ++D
Sbjct: 405 DLSRCNSLTDAGLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTD 464

Query: 242 GSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK 299
             L  L  L++L+ LNL + R+ TD GLA LT LT L HLDL   + +TD G A+L    
Sbjct: 465 AGLAHLTPLTALQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLT 524

Query: 300 NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN-VSN 357
            L+ L +     LTDAG+ H+  L++L  L+LS  C +TD  L  ++ LTGL  L  V  
Sbjct: 525 GLQRLVLSWCDKLTDAGLAHLTPLTALQYLDLS-CCEITDAGLAHLTPLTGLQHLVLVYC 583

Query: 358 SRITSAGLRHLKPLKNLRSLTLESC 382
            ++T AGL HL PL  L+ L L SC
Sbjct: 584 WQLTDAGLAHLTPLTTLQYLYLGSC 608



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 185/354 (52%), Gaps = 33/354 (9%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L  L+ L  L+      +T  G+     L  L  LDL RC  +   GL +L  L  L+ 
Sbjct: 369 HLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNSLTDAGLAHLTPLTALQH 428

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVT 120
           L++  C   TD+ +  L+ LT L+ L +S  K +TD+G+A+L  L  L  LNL  C   T
Sbjct: 429 LDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPLTALQHLNLCNCRKFT 488

Query: 121 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 178
              L  L+ L +L +L+L+ C+ L+DDG    + +  L+ L L + +++TD  L HL  L
Sbjct: 489 DNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSWCDKLTDAGLAHLTPL 548

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SF 236
           T L+ L+L  C I D GL +LT L  L+ L L    Q+  +GL HL+ LT L+ + L S 
Sbjct: 549 TALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAHLTPLTTLQYLYLGSC 608

Query: 237 TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHL--------------- 280
             ++D  L  LA L++L+ L L D R++TDTGLA LT LT L HL               
Sbjct: 609 NRLTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTLNRCEKLTDDGLAH 668

Query: 281 ----------DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 324
                     DL    ITD+G A+L +   L+ L++ G  +TD G++  + L++
Sbjct: 669 LKPLAALQYLDLSYCEITDAGLAHLTHLMALQRLDLYGREITDDGLERFETLAA 722



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 168/335 (50%), Gaps = 32/335 (9%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L+ L+ L  L   R N++T  G+     L  L  LDL  C      GL +L  L  L+ 
Sbjct: 394 HLTPLTALQHLDLSRCNSLTDAGLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQY 453

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC---- 117
           LN+     +TD+ +  L+ LT L+ L + +C K TD+G+A+L  L  L  L+L  C    
Sbjct: 454 LNLSEYKNLTDAGLAHLTPLTALQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLT 513

Query: 118 --------PVTA--------------ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 155
                   P+T               A L  L+ L +L YL+L+ C+++D G    + + 
Sbjct: 514 DDGLAHLAPLTGLQRLVLSWCDKLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLT 573

Query: 156 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD- 212
            L+ L L +  ++TD  L HL  LT L+ L L SC  + D GL +L  L  L+ L L+D 
Sbjct: 574 GLQHLVLVYCWQLTDAGLAHLTPLTTLQYLYLGSCNRLTDAGLAHLAPLTALQHLALNDC 633

Query: 213 TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
            ++  +GL HL+ LT L+ + L+    ++D  L  L  L++L+ L+L   +ITD GLA L
Sbjct: 634 RKLTDTGLAHLTPLTALQHLTLNRCEKLTDDGLAHLKPLAALQYLDLSYCEITDAGLAHL 693

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           T L  L  LDL+G  ITD G           +LEI
Sbjct: 694 THLMALQRLDLYGREITDDGLERFETLAASFNLEI 728



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 4/103 (3%)

Query: 285 ARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
           AR+TD+    L+N KNL+ L    C G +TDAG+ H+  L++L  L+LS    LTD  L 
Sbjct: 235 ARLTDAHLLTLKNCKNLKILHFKKCWG-VTDAGLAHLTPLTTLQYLDLSDCEKLTDDGLA 293

Query: 343 LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKV 384
            ++ LTGL  L++S  S +T AGL HL PL  L+ L L  C+ 
Sbjct: 294 HLTPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEY 336


>gi|46446667|ref|YP_008032.1| hypothetical protein pc1033 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400308|emb|CAF23757.1| hypothetical protein pc1033 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 662

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 145/399 (36%), Positives = 219/399 (54%), Gaps = 13/399 (3%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKW 67
            NL  L F+    +T  G+     L  L  L L +C R+ + GL +L  L  L+ LN+  
Sbjct: 249 ENLKVLHFKECRHLTDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTALQYLNLSE 308

Query: 68  CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLD 125
              +TD+ +  L+ LT L+ L +S C  +TD+G+A+L  L  L  L+L GC  +T A L 
Sbjct: 309 YKNLTDAGLAHLTPLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAGLA 368

Query: 126 SLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLES 183
            L+ L  L +LNL+RC +L+D G    + +  L+ L+L G   +TD  L HL  LT L+ 
Sbjct: 369 HLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQH 428

Query: 184 LNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGIS 240
           L+L  C  + D GL +LT L  L+ L L +  +   +GL HL+ L+ L+ +NLS    ++
Sbjct: 429 LDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLNLSRCNKLT 488

Query: 241 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNF 298
           D  L  L  L++L+ L+L +   +TD GLA LT LT L HL L    ++TD+G  +L+  
Sbjct: 489 DVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLKLL 548

Query: 299 KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
             L+ L +     LTDAG+ H+  L++L  L L+    LTD  L  ++ LT L  L++  
Sbjct: 549 TGLQHLNLSNCKNLTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDLRY 608

Query: 358 SR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 394
            + +T AGL HL PL  LR L L  C ++T   + R ++
Sbjct: 609 CQNLTDAGLAHLTPLTGLRHLDLSQCWRLTKAGLARFKT 647



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 135/341 (39%), Positives = 194/341 (56%), Gaps = 11/341 (3%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLL 112
           LK    L+ L+ K C  +TD+ +  L+ LT L+ L +  C ++T++G+A+L  L  L  L
Sbjct: 245 LKSCENLKVLHFKECRHLTDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTALQYL 304

Query: 113 NL-EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITD 169
           NL E   +T A L  L+ L +L +L L+ CQ L+D G    + +  L+ L+L G   +TD
Sbjct: 305 NLSEYKNLTDAGLAHLTPLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTD 364

Query: 170 ECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLT 227
             L HL  LT L+ LNL  C  + D GL +LT L  L+ L+LS  Q +  +GL HL+ LT
Sbjct: 365 AGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLT 424

Query: 228 NLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA 285
            L+ ++LS    ++D  L  L  L+ L+ LNL + R+ TD GLA LT L+ L HL+L   
Sbjct: 425 GLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLNLSRC 484

Query: 286 -RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
            ++TD G A+L     L+ L++     LTD G+ H+  L+SL  L L     LTD  L  
Sbjct: 485 NKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVH 544

Query: 344 ISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 383
           +  LTGL  LN+SN + +T AGL HL PL  L+ L L  C+
Sbjct: 545 LKLLTGLQHLNLSNCKNLTDAGLAHLTPLTALQYLYLNWCR 585



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 198/363 (54%), Gaps = 11/363 (3%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L+ L+ L  L+      +T  G+     L  L  L L  C  +   GL +L  LM L+ 
Sbjct: 294 HLTPLTALQYLNLSEYKNLTDAGLAHLTPLTALQHLGLSGCQNLTDAGLAHLTPLMGLQH 353

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           L++  C  +TD+ +  L+ LT L+ L +S C+K+TD+G+A+L  L  L  L+L GC  +T
Sbjct: 354 LDLSGCQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLT 413

Query: 121 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 178
            A L  L+ L  L +L+L+ CQ L+D G    + +  L+ LNL    + TD  L HL  L
Sbjct: 414 DAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPL 473

Query: 179 TNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-S 235
           + L+ LNL  C  + D GL +LT L  L+ L+LS    +   GL HL+ LT+L+ + L S
Sbjct: 474 SVLQHLNLSRCNKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLIS 533

Query: 236 FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAA 293
              ++D  L  L  L+ L+ LNL + + +TD GLA LT LT L +L L   R +TD+G A
Sbjct: 534 CDKLTDAGLVHLKLLTGLQHLNLSNCKNLTDAGLAHLTPLTALQYLYLNWCRKLTDAGLA 593

Query: 294 YLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
           +L +   L+ L++     LTDAG+ H+  L+ L  L+LSQ   LT   L     L   ++
Sbjct: 594 HLTSLTALQHLDLRYCQNLTDAGLAHLTPLTGLRHLDLSQCWRLTKAGLARFKTLAASLN 653

Query: 353 LNV 355
           L +
Sbjct: 654 LEI 656



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/268 (39%), Positives = 151/268 (56%), Gaps = 17/268 (6%)

Query: 138 LNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GI 191
           LN+  LSD+    F +I       +K+LNL    + + C + LK   NL+ L+   C  +
Sbjct: 207 LNKAFLSDE----FGRIINHFSNEIKILNLPNKILNNACFLALKSCENLKVLHFKECRHL 262

Query: 192 GDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAG 249
            D GL +LT L  L+ L L    ++ ++GL HL+ LT L+ +NLS +  ++D  L  L  
Sbjct: 263 TDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTALQYLNLSEYKNLTDAGLAHLTP 322

Query: 250 LSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEIC 307
           L++L+ L L   Q +TD GLA LT L GL HLDL G + +TD+G A+L     L+ L + 
Sbjct: 323 LTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLS 382

Query: 308 G-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGL 365
               LTDAG+ H+  L+ L  L+LS   NLTD  L  ++ LTGL  L++S  + +T AGL
Sbjct: 383 RCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGL 442

Query: 366 RHLKPLKNLRSLTLESC-KVTANDIKRL 392
            HL PL  L+ L L +C K T N +  L
Sbjct: 443 AHLTPLTGLQHLNLCNCRKFTDNGLAHL 470



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/254 (41%), Positives = 142/254 (55%), Gaps = 18/254 (7%)

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCG-IGDE 194
           N C L+   CE      +LKVL+  F E   +TD  L HL  LT L+ L L  C  + + 
Sbjct: 239 NACFLALKSCE------NLKVLH--FKECRHLTDAGLAHLTPLTALQHLGLGQCWRLTNA 290

Query: 195 GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSS 252
           GL +LT L  L+ L LS+ + +  +GL HL+ LT L+ + LS    ++D  L  L  L  
Sbjct: 291 GLAHLTPLTALQYLNLSEYKNLTDAGLAHLTPLTALQHLGLSGCQNLTDAGLAHLTPLMG 350

Query: 253 LKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-G 309
           L+ L+L   Q +TD GLA LT LTGL HL+L    ++TD+G A+L     L+ L++ G  
Sbjct: 351 LQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQ 410

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHL 368
            LTDAG+ H+  L+ L  L+LS   NLTD  L  ++ LTGL  LN+ N R  T  GL HL
Sbjct: 411 NLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHL 470

Query: 369 KPLKNLRSLTLESC 382
            PL  L+ L L  C
Sbjct: 471 TPLSVLQHLNLSRC 484


>gi|46446831|ref|YP_008196.1| hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400472|emb|CAF23921.1| hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 666

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 147/404 (36%), Positives = 224/404 (55%), Gaps = 17/404 (4%)

Query: 6   SGLSNLTSL-SFRRNN-----AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLM 58
           +GL++LT L S +R N      IT  G+     L  L  LDL +C+++   GL +L  L 
Sbjct: 225 AGLAHLTPLTSLQRLNLSKLWCITDAGLAHLTTLKALQHLDLSQCSKLTDDGLAHLTPLT 284

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 117
            L+ L + +C  +TD+ +  L+ LT L+ L +S C  +TD+G+A+L  L  L  L+L  C
Sbjct: 285 ALQHLGLNYCENLTDAGLAHLTLLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWC 344

Query: 118 -PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVH 174
             +T A L  L++L  L +L+L+ C+ L+D G    + + +L+ LNL +  ++TD  L H
Sbjct: 345 LKLTDAGLAHLTSLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAH 404

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESIN 233
           L  LT L+ LNL    +   GL +LT L  L+ L+LS + ++  +GL HL  L  L+ +N
Sbjct: 405 LTPLTALQHLNLSRYNLTYAGLAHLTSLTGLQHLDLSGSRKLIDAGLAHLRPLVALQHLN 464

Query: 234 LS-FTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGAR-ITDS 290
           L+    ++D  L  L+ L +L++L L   Q +T  GLA L  L  L +LDL     +TD+
Sbjct: 465 LTGCWKLTDAGLAHLSPLKALQTLGLSWCQNLTGAGLAHLKPLVALQYLDLSNCNNLTDA 524

Query: 291 GAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
           G A+LR    L+ L + G   LTDAG+ H+  L +L  LNLS    LTD  L  +  L  
Sbjct: 525 GLAHLRPLVALQHLNLTGCWKLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVA 584

Query: 350 LVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           L  L++SN + +T  GL HL+PL  L+ L L    +T + +  L
Sbjct: 585 LQHLDLSNCNNLTDEGLTHLRPLVALQHLNLSRYNLTDDGLAHL 628



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 146/394 (37%), Positives = 207/394 (52%), Gaps = 33/394 (8%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 69
           + +L F  N  +T   + A     NL  L  + C  I   GL +L  L  L+ LN+    
Sbjct: 186 IEALDFFNNIYLTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLW 245

Query: 70  CITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 127
           CITD+ +  L+ L  L+ L +S CSK+TD G+A+L  L  L  L L  C  +T A L  L
Sbjct: 246 CITDAGLAHLTTLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHL 305

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           + L  L +L+L+ C+                        +TD  L HL  L  L+ L+L 
Sbjct: 306 TLLTGLQHLDLSNCK-----------------------NLTDAGLAHLTSLMALQHLDLS 342

Query: 188 SC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSL 244
            C  + D GL +LT L  L+ L+LS+ + +  +GL HL+ L  L+ +NLS+   ++D  L
Sbjct: 343 WCLKLTDAGLAHLTSLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLNLSWCLKLTDAGL 402

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRS 303
             L  L++L+ LNL    +T  GLA LTSLTGL HLDL G+R + D+G A+LR    L+ 
Sbjct: 403 AHLTPLTALQHLNLSRYNLTYAGLAHLTSLTGLQHLDLSGSRKLIDAGLAHLRPLVALQH 462

Query: 304 LEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRIT 361
           L + G   LTDAG+ H+  L +L  L LS   NLT   L  +  L  L  L++SN + +T
Sbjct: 463 LNLTGCWKLTDAGLAHLSPLKALQTLGLSWCQNLTGAGLAHLKPLVALQYLDLSNCNNLT 522

Query: 362 SAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 394
            AGL HL+PL  L+ L L  C K+T   +  L S
Sbjct: 523 DAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLTS 556



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 192/386 (49%), Gaps = 34/386 (8%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L+ L+ L  L       +T  G+     L  L  LDL  C  +   GL +L  LM L+ 
Sbjct: 279 HLTPLTALQHLGLNYCENLTDAGLAHLTLLTGLQHLDLSNCKNLTDAGLAHLTSLMALQH 338

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 120
           L++ WC  +TD+ +  L+ LT L+ L +S C  +TD+G+A+L  L  L  LNL  C  +T
Sbjct: 339 LDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLNLSWCLKLT 398

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLT 179
            A L  L+ L +L +LNL+R  L+  G    + +  L+ L+L G  ++ D  L HL+ L 
Sbjct: 399 DAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTSLTGLQHLDLSGSRKLIDAGLAHLRPLV 458

Query: 180 NLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-- 235
            L+ LNL  C  + D GL +L+ L  L+ L LS  Q +  +GL HL  L  L+ ++LS  
Sbjct: 459 ALQHLNLTGCWKLTDAGLAHLSPLKALQTLGLSWCQNLTGAGLAHLKPLVALQYLDLSNC 518

Query: 236 ---------------------FTG---ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 270
                                 TG   ++D  L  L  L +L+ LNL    ++TD GLA 
Sbjct: 519 NNLTDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAH 578

Query: 271 LTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
           L  L  L HLDL     +TD G  +LR    L+ L +    LTD G+ H+  L++L  L+
Sbjct: 579 LKPLVALQHLDLSNCNNLTDEGLTHLRPLVALQHLNLSRYNLTDDGLAHLTPLTTLQYLD 638

Query: 330 LSQNCNLTDKTLELISGLTGLVSLNV 355
           LS   NLTD  L     +   ++L +
Sbjct: 639 LSSCYNLTDAGLAHFKTVAASLNLKI 664


>gi|149174587|ref|ZP_01853213.1| hypothetical protein PM8797T_09949 [Planctomyces maris DSM 8797]
 gi|148846697|gb|EDL61034.1| hypothetical protein PM8797T_09949 [Planctomyces maris DSM 8797]
          Length = 540

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 138/433 (31%), Positives = 221/433 (51%), Gaps = 45/433 (10%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E   G      L F     ++ +   A + L NL  + L   T   GG  ++ GL  LE 
Sbjct: 79  EKFLGFMTAVELDFEFGE-LSEEDFIAISQLKNLKSIHLLITTIEEGGRKHITGLQNLEL 137

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L+++    ITDSD+K +  L NL+ L ++ + ++D+G+A+L+GL +L +L LEG  +   
Sbjct: 138 LSLR-GTTITDSDLKYVGALKNLQKLNLNNTAISDAGLAHLRGLSELRVLELEGTQLDGT 196

Query: 123 CLDSLSALGSLFYLNLN------------------RCQLSDDGCE--------------- 149
            L  L  L  L  L+L+                  R Q+ D G +               
Sbjct: 197 GLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSLFG 256

Query: 150 -KFSKIG--------SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
            + S +G         L+ L      I+D+ + HLKGL NL SL LD   + D GLV+L 
Sbjct: 257 AEISDVGLAHLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGSRVSDAGLVHLA 316

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
            L  L+ L+L +T +  +GL HL  LT+L+S++LS T +SD  L  L+ L +L+SL L +
Sbjct: 317 KLQKLQSLDLGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSRLQNLESLYLRS 376

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
             ++  GL++L +L+ L +LD+  +++ D G   +    +L SL +    +TD G+ H+ 
Sbjct: 377 TNLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLDSLGLFATPITDQGLVHLS 436

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
            L++L  L+L Q  +++D  L  +S L GL  L++  +RIT AGL HL+ L  L  L L+
Sbjct: 437 GLTNLKKLDL-QETSISDAGLVHLSHLAGLKVLDLEGTRITDAGLIHLQGLNELEQLELD 495

Query: 381 SCKVTANDIKRLQ 393
              V+   +K L+
Sbjct: 496 KTAVSDAGLKHLK 508



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 138/415 (33%), Positives = 210/415 (50%), Gaps = 20/415 (4%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           ++++GL NL  LS R    IT   +K    L NL KL+L        GL +L+GL +L  
Sbjct: 127 KHITGLQNLELLSLR-GTTITDSDLKYVGALKNLQKLNLNNTAISDAGLAHLRGLSELRV 185

Query: 63  LNI-------------KWCNCITDSDMKPLS----GLTNLKSLQISCSKVTDSGIAYLKG 105
           L +             K  N + + D+   +    G  + +S      ++ D+G+ ++  
Sbjct: 186 LELEGTQLDGTGLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGK 245

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           L+ L  L+L G  ++   L  L  L  L  L   R  +SD G      + +L  L L  +
Sbjct: 246 LKHLKKLSLFGAEISDVGLAHLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGS 305

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
            ++D  LVHL  L  L+SL+L +  I D GL++L  L +LK L+LSDT V   GL HLS 
Sbjct: 306 RVSDAGLVHLAKLQKLQSLDLGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSR 365

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           L NLES+ L  T +S   L  L  LS L+ L++   ++ D GL A+  L  L  L LF  
Sbjct: 366 LQNLESLYLRSTNLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLDSLGLFAT 425

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
            ITD G  +L    NL+ L++    ++DAG+ H+  L+ L +L+L +   +TD  L  + 
Sbjct: 426 PITDQGLVHLSGLTNLKKLDLQETSISDAGLVHLSHLAGLKVLDL-EGTRITDAGLIHLQ 484

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           GL  L  L +  + ++ AGL+HLK L  L+ L  E  ++T   I  L+ + LP+L
Sbjct: 485 GLNELEQLELDKTAVSDAGLKHLKGLTKLQFLQYEETQITEAGINDLR-QSLPDL 538



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 142/292 (48%), Gaps = 46/292 (15%)

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           G EKF    +   L+  F E+++E  + +  L NL+S++L    I + G  ++TGL NL+
Sbjct: 77  GEEKFLGFMTAVELDFEFGELSEEDFIAISQLKNLKSIHLLITTIEEGGRKHITGLQNLE 136

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            L L  T +  S L+++  L NL+ +NL+ T ISD  L  L GLS L+ L L+  Q+  T
Sbjct: 137 LLSLRGTTITDSDLKYVGALKNLQKLNLNNTAISDAGLAHLRGLSELRVLELEGTQLDGT 196

Query: 267 GLAALTSLTGLTHLDL------------------------------------------FG 284
           GL  L  L  L  LDL                                          FG
Sbjct: 197 GLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSLFG 256

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
           A I+D G A+L++ K L SLE     ++D GV H+K L +LT L L     ++D  L  +
Sbjct: 257 AEISDVGLAHLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLD-GSRVSDAGLVHL 315

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN---DIKRLQ 393
           + L  L SL++ N+ I+  GL HL+ L +L+SL L    V+ +    + RLQ
Sbjct: 316 AKLQKLQSLDLGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSRLQ 367


>gi|301098037|ref|XP_002898112.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262105473|gb|EEY63525.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 648

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 143/428 (33%), Positives = 216/428 (50%), Gaps = 27/428 (6%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLE 61
            +++ L  L   SF+    ++ + ++       L  L+L  C  +    V +L+ L  L+
Sbjct: 220 RHVNRLPELLVASFQGCTGLSKETIEMLKLSTKLTTLNLSGCANVDDKCVKSLRQLEHLK 279

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIA-YLKGLQKLTLLNLEGCPV 119
           SL +  C  +TD  +K L  LT L+ L++  C K+TD     ++    KL  L++  C +
Sbjct: 280 SLQLVGCRRLTDKGVKRLFKLTKLEKLRLGRCRKLTDDAFGGFVDSFPKLRELDVSNCRL 339

Query: 120 TAACLDSLSALGSLFYLNLNRCQ-LSDDG-----------------CEKFSKIGS----L 157
           +   +  +  + SL  L +  CQ +SD G                 C K   I +    L
Sbjct: 340 SERAMQHIGQVKSLEVLVIRGCQDISDVGMASLAELTNLKYFDARHCGKIHSIPTEWTQL 399

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
           +VL LG+    +     L+ LT L+ L L  C I   G   ++ L +L+ LE+++T +  
Sbjct: 400 EVLLLGYTAFAESDAAVLQYLTKLQELELRKCRIMKRGFQFISRLKHLERLEVAETALTD 459

Query: 218 SGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276
           S L  + +   NL+++N+S T ISD     L  L  L+ L LD   IT+  LA L+ L  
Sbjct: 460 SRLLEICNNAINLKALNVSNTEISDSGTTGLTKLKELRILGLDTSGITNRALANLSFLPQ 519

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           L  LDLFGA ITD+G  +L     L+ L ICGG + D GV  I  L+SLT LNLSQN N+
Sbjct: 520 LERLDLFGANITDNGLMHLIPLHKLQELAICGGNIGDRGVGLISKLTSLTSLNLSQNRNI 579

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 396
             K+L  +  LT L  LN+SN+ I++  LRHL PLK L+SL++  C ++   I  L+   
Sbjct: 580 RTKSLFYLRSLTSLRCLNLSNTGISALSLRHLSPLKELQSLSVYGCSLSQGHIDVLRE-I 638

Query: 397 LPNLVSFR 404
           LP L   R
Sbjct: 639 LPELKCLR 646


>gi|46446522|ref|YP_007887.1| hypothetical protein pc0888 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400163|emb|CAF23612.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 653

 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 142/386 (36%), Positives = 215/386 (55%), Gaps = 13/386 (3%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWC 68
           NL  L   +   IT  G+     L  L  L+L  C ++   GL +L  L  L+ LN+ +C
Sbjct: 249 NLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLTPLTALQHLNLSFC 308

Query: 69  NCITDSDMKPLSGLTNLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLD 125
           + +TD+ +  L+ LT L+ L +S    K+TD+G+A+L  L  L  LNL  C  +T A L 
Sbjct: 309 DKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLV 368

Query: 126 SLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLES 183
            L  L  L +L+L    +L+  G    + + +L+ L+L G +++TD  L HL  LT L+ 
Sbjct: 369 HLKLLTGLQHLDLREFWELTGAGLAHLTTLTALQHLDLSGCDKLTDVGLAHLTPLTTLQH 428

Query: 184 LNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGIS 240
           L+L  C  + + GLV+L  L  L+ L LS+   +  +GL HL+ LT L+ ++LS  + ++
Sbjct: 429 LDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTALQHLDLSQCSKLT 488

Query: 241 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNF 298
           D  L  L  L++L+ L+L    ++TD GLA LT LT L HL L   R +TD+G A+L   
Sbjct: 489 DDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCRNLTDAGLAHLTPL 548

Query: 299 KNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
           + L+ L + GG  LT AG+ H++ L +L  L+LS    LTD  L  ++ L  L  L++S 
Sbjct: 549 ETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHLTPLVALQHLDLSY 608

Query: 358 -SRITSAGLRHLKPLKNLRSLTLESC 382
              +T AGL HL+PL  L+ L L  C
Sbjct: 609 CDGLTDAGLTHLRPLVALQHLDLSYC 634



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 180/337 (53%), Gaps = 33/337 (9%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 115
           L ++E+ N      +TD+ +  L    NLK L +  C  +TD G+A+L  L  L  L L 
Sbjct: 222 LNEIEAFNFSDNAYLTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELS 281

Query: 116 GC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG--FNEITDEC 171
            C  +T A L  L+ L +L +LNL+ C +L+D G    + + +L+ LNL   + ++TD  
Sbjct: 282 DCRKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAG 341

Query: 172 LVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
           L HL  LT L+ LNL  C  + D GLV+L  L  L+ L+L +  ++  +GL HL+ LT L
Sbjct: 342 LAHLTPLTALQHLNLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTAL 401

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-IT 288
           + ++LS                          ++TD GLA LT LT L HLDL   R +T
Sbjct: 402 QHLDLS-----------------------GCDKLTDVGLAHLTPLTTLQHLDLKRCRNLT 438

Query: 289 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           ++G  +L+    L+ L +     LTDAG+ H+  L++L  L+LSQ   LTD  L  ++ L
Sbjct: 439 NAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPL 498

Query: 348 TGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
           T L  L++S  S++T  GL HL PL  L+ L L  C+
Sbjct: 499 TALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCR 535



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/278 (37%), Positives = 147/278 (52%), Gaps = 39/278 (14%)

Query: 150 KFSKI-----GSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL 202
           +F KI       ++  N   N  +TD  L+ LK   NL+ L+L+ C  I D+GL +LT L
Sbjct: 213 EFEKIIKHFLNEIEAFNFSDNAYLTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHLTPL 272

Query: 203 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD- 259
             L+ LELSD  ++  +GL HL+ LT L+ +NLSF   ++D  L  L  L++L+ LNL  
Sbjct: 273 TALQHLELSDCRKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSR 332

Query: 260 -ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSL------EICGGGL 311
              ++TD GLA LT LT L HL+L F  ++TD+G  +L+    L+ L      E+ G GL
Sbjct: 333 CYYKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGL 392

Query: 312 --------------------TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
                               TD G+ H+  L++L  L+L +  NLT+  L  +  LTGL 
Sbjct: 393 AHLTTLTALQHLDLSGCDKLTDVGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQ 452

Query: 352 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
            LN+S    +T AGL HL PL  L+ L L  C    +D
Sbjct: 453 HLNLSECYHLTDAGLAHLTPLTALQHLDLSQCSKLTDD 490



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/262 (35%), Positives = 150/262 (57%), Gaps = 14/262 (5%)

Query: 6   SGLSNLTSLSFRRN------NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLM 58
           +GL++LT+L+  ++      + +T  G+     L  L  LDL+RC  + + GLV+LK L 
Sbjct: 390 AGLAHLTTLTALQHLDLSGCDKLTDVGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLT 449

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 117
            L+ LN+  C  +TD+ +  L+ LT L+ L +S CSK+TD G+A+L  L  L  L+L  C
Sbjct: 450 GLQHLNLSECYHLTDAGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLDLSQC 509

Query: 118 -PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 174
             +T   L  L+ L +L +L L RC+ L+D G    + + +L+ LNL G  ++T   L H
Sbjct: 510 SKLTDDGLAHLTPLTALQHLVLARCRNLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAH 569

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESI 232
           L+ L  L+ L+L  C G+ D GL +LT L  L+ L+LS    +  +GL HL  L  L+ +
Sbjct: 570 LRPLVALQHLDLSYCNGLTDAGLAHLTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHL 629

Query: 233 NLSF-TGISDGSLRKLAGLSSL 253
           +LS+  G++D  L     L+++
Sbjct: 630 DLSYCDGLTDAGLAHFKFLAAI 651



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 112/205 (54%), Gaps = 6/205 (2%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L  L+ L  L+      +T  G+     L  L  LDL +C+++   GL +L  L  L+ 
Sbjct: 444 HLKLLTGLQHLNLSECYHLTDAGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQH 503

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE-GCPVT 120
           L++  C+ +TD  +  L+ LT L+ L ++ C  +TD+G+A+L  L+ L  LNL  G  +T
Sbjct: 504 LDLSQCSKLTDDGLAHLTPLTALQHLVLARCRNLTDAGLAHLTPLETLQHLNLSGGYKLT 563

Query: 121 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 178
            A L  L  L +L +L+L+ C  L+D G    + + +L+ L+L + + +TD  L HL+ L
Sbjct: 564 GAGLAHLRPLVALQHLDLSYCNGLTDAGLAHLTPLVALQHLDLSYCDGLTDAGLTHLRPL 623

Query: 179 TNLESLNLDSC-GIGDEGLVNLTGL 202
             L+ L+L  C G+ D GL +   L
Sbjct: 624 VALQHLDLSYCDGLTDAGLAHFKFL 648


>gi|149176715|ref|ZP_01855326.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148844356|gb|EDL58708.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 1266

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 136/414 (32%), Positives = 209/414 (50%), Gaps = 27/414 (6%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           T +LSGLS L +L      AIT +G+     L +L  LDL R      GLV+LK   +L+
Sbjct: 470 TRHLSGLSELETLQLP-GTAITDKGLATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLK 528

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +LN+     +TD+ +  L  L  L+SL++  + VT +G++ L  L KL  L+L   P+T 
Sbjct: 529 TLNL-GSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSELVTLPKLKTLDLSLTPLTE 587

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             L ++S L  L  L+L + +++  G +    +  L  L L + +I D  L  +  LT L
Sbjct: 588 TGLQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLDYTQIDDTALASIAKLTKL 647

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            SLNL    I D G+V+L  L  LK L L +T+V ++GL+ L  L  L  + L  T I D
Sbjct: 648 RSLNLRKTEITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETDIDD 707

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKN 300
             L+ L+ + +LKSL+L   ++TDTG+A     L   T L+L G  +T++G A L+  + 
Sbjct: 708 AGLKTLSSIFNLKSLDLYGTKVTDTGMAYFHDKLIKPTDLNLHGTGVTEAGVAMLK--QQ 765

Query: 301 LRSLEICGGGLTDAGVKHI-----KDLSSLTLLNLSQNC-----------------NLTD 338
             +  I      D+G++ I     K     T   L +N                  +  D
Sbjct: 766 CPNCRIQASPPLDSGIQSILAKLKKSGGFYTRRRLPENAEQLVVRFYPLPGREKKLSPLD 825

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           + L L++GL  L  L+V+ + +T AGL+HLK +  LR L L     T   +K+L
Sbjct: 826 ERLSLLNGLKTLYELDVAGADLTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQL 879



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 167/302 (55%), Gaps = 1/302 (0%)

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
           + N I D+ +K L  +  LKS+    + +TD    +L GL +L  L L G  +T   L +
Sbjct: 437 FGNQIVDAQVKHLKHVPRLKSVSFISTSITDDCTRHLSGLSELETLQLPGTAITDKGLAT 496

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           L+ L SL  L+L+R  ++D G     K   LK LNLG   +TD  L HLK L  LESL L
Sbjct: 497 LNDLKSLENLDLSRSGITDAGLVSLKKFPQLKTLNLGSTRVTDAGLTHLKALPKLESLKL 556

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
            +  +   GL  L  L  LK L+LS T +  +GL+ +S L +L+S++L+ T I+   ++ 
Sbjct: 557 YNTSVTGTGLSELVTLPKLKTLDLSLTPLTETGLQTVSKLIHLQSLSLTKTKINSAGVKH 616

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           L  L+ L +L LD  QI DT LA++  LT L  L+L    ITD+G  +L N K L+ L +
Sbjct: 617 LVPLTELTTLKLDYTQIDDTALASIAKLTKLRSLNLRKTEITDTGMVHLENLKPLKVLSL 676

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
               +++AG+K ++ L  L  L L +  ++ D  L+ +S +  L SL++  +++T  G+ 
Sbjct: 677 DETRVSNAGLKSLQSLQQLYRLGLRE-TDIDDAGLKTLSSIFNLKSLDLYGTKVTDTGMA 735

Query: 367 HL 368
           + 
Sbjct: 736 YF 737



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 129/416 (31%), Positives = 201/416 (48%), Gaps = 32/416 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L GLS L SL+  +  +++ QG++    L  L  L + +       L +L GL +L SLN
Sbjct: 282 LKGLSGLKSLTLNQT-SVSDQGLQILNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLN 340

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +     +TD+ M+ +  L  LK L +  + VT +G+A +     L    +E    TA   
Sbjct: 341 LART-AVTDAGMEHIIKLKQLKKLNLISTGVTSAGMARVHA--ALPKCKIETGKATAPG- 396

Query: 125 DSLS------------------------ALGSLFYLNLNRC--QLSDDGCEKFSKIGSLK 158
           DS                           L S ++ ++     Q+ D   +    +  LK
Sbjct: 397 DSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHLKHVPRLK 456

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
            ++     ITD+C  HL GL+ LE+L L    I D+GL  L  L +L+ L+LS + +  +
Sbjct: 457 SVSFISTSITDDCTRHLSGLSELETLQLPGTAITDKGLATLNDLKSLENLDLSRSGITDA 516

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
           GL  L     L+++NL  T ++D  L  L  L  L+SL L    +T TGL+ L +L  L 
Sbjct: 517 GLVSLKKFPQLKTLNLGSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSELVTLPKLK 576

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
            LDL    +T++G   +    +L+SL +    +  AGVKH+  L+ LT L L     + D
Sbjct: 577 TLDLSLTPLTETGLQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLDY-TQIDD 635

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
             L  I+ LT L SLN+  + IT  G+ HL+ LK L+ L+L+  +V+   +K LQS
Sbjct: 636 TALASIAKLTKLRSLNLRKTEITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQS 691



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 177/386 (45%), Gaps = 59/386 (15%)

Query: 73   DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
            D  +  L+GL  L  L ++ + +TD+G+ +LK + +L +L L G   T   L  L+ L  
Sbjct: 825  DERLSLLNGLKTLYELDVAGADLTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKK 884

Query: 133  LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
            L  L +    +++D   +  ++  LK+  L  N+IT+  L HL GLTNL+ LNL    I 
Sbjct: 885  LEVLQIENAGITNDQLIQLKEMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIY 944

Query: 193  DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
             +G+V+L  L NL+ L L  T+V   GL  L  L  L ++ L  T I+DG    L  ++S
Sbjct: 945  SDGMVHLASLENLRSLALEHTRVADQGLEDLLRLPRLNTLILDGTTITDGGTPLLRKMTS 1004

Query: 253  LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR---------- 302
            L  L+L++  ITD GL  L +L GL  LDL   ++++ G   ++NF+  +          
Sbjct: 1005 LGMLSLNSTYITDRGLKDLETLRGLYRLDLNDTKVSEDG---VKNFQRSQPKCNIEYAAP 1061

Query: 303  ---SLEICGGGLTDAG------------------------------------------VK 317
               SL+     L +AG                                          +K
Sbjct: 1062 LASSLQYVIQELKEAGANVNVINQGHHYVIESVEFPNHLQGIFAIHNRAEKAKVFDSCLK 1121

Query: 318  HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
             I ++  L  L++       +  LE I  LT L  L++S SRI   G++ LK L NL+ L
Sbjct: 1122 RISEMKDLKRLSMHW-AEFDNTKLEYIKNLTYLSELDLSGSRIPDQGIKDLKGLVNLQKL 1180

Query: 378  TLESCKVTANDIKRLQSRDLPNLVSF 403
             LE  ++T   + +L    L  L S 
Sbjct: 1181 KLEHTQITDAGVAQLAQLQLNRLYSL 1206



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 159/317 (50%), Gaps = 14/317 (4%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDL------ERCTRIHGGLVNLKGLMKLESLN 64
            TS+ F  N  + AQ +K    +  L  +        + CTR      +L GL +LE+L 
Sbjct: 431 FTSIRFFGNQIVDAQ-VKHLKHVPRLKSVSFISTSITDDCTR------HLSGLSELETLQ 483

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +     ITD  +  L+ L +L++L +S S +TD+G+  LK   +L  LNL    VT A L
Sbjct: 484 LPGT-AITDKGLATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKTLNLGSTRVTDAGL 542

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             L AL  L  L L    ++  G  +   +  LK L+L    +T+  L  +  L +L+SL
Sbjct: 543 THLKALPKLESLKLYNTSVTGTGLSELVTLPKLKTLDLSLTPLTETGLQTVSKLIHLQSL 602

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           +L    I   G+ +L  L  L  L+L  TQ+  + L  ++ LT L S+NL  T I+D  +
Sbjct: 603 SLTKTKINSAGVKHLVPLTELTTLKLDYTQIDDTALASIAKLTKLRSLNLRKTEITDTGM 662

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
             L  L  LK L+LD  ++++ GL +L SL  L  L L    I D+G   L +  NL+SL
Sbjct: 663 VHLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETDIDDAGLKTLSSIFNLKSL 722

Query: 305 EICGGGLTDAGVKHIKD 321
           ++ G  +TD G+ +  D
Sbjct: 723 DLYGTKVTDTGMAYFHD 739



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 154/308 (50%), Gaps = 25/308 (8%)

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           S++   +++ D+ + +LK + +L  ++     +T  C   LS L  L  L L    ++D 
Sbjct: 433 SIRFFGNQIVDAQVKHLKHVPRLKSVSFISTSITDDCTRHLSGLSELETLQLPGTAITDK 492

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           G    + + SL+ L+L  + ITD  LV LK    L++LNL S  + D GL +L  L  L+
Sbjct: 493 GLATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKTLNLGSTRVTDAGLTHLKALPKLE 552

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            L+L +T V  +GL  L  L  L++++LS T +++  L+ ++ L  L+SL+L   +I   
Sbjct: 553 SLKLYNTSVTGTGLSELVTLPKLKTLDLSLTPLTETGLQTVSKLIHLQSLSLTKTKINSA 612

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
           G+  L  LT LT L L   +I D+  A +     LRSL +    +TD G+ H+++L  L 
Sbjct: 613 GVKHLVPLTELTTLKLDYTQIDDTALASIAKLTKLRSLNLRKTEITDTGMVHLENLKPLK 672

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
           +L+L +                         +R+++AGL+ L+ L+ L  L L    +  
Sbjct: 673 VLSLDE-------------------------TRVSNAGLKSLQSLQQLYRLGLRETDIDD 707

Query: 387 NDIKRLQS 394
             +K L S
Sbjct: 708 AGLKTLSS 715



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 133/288 (46%), Gaps = 38/288 (13%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N ITD+ +K ++ L +++ L     K++ SG+  L  L+ L  L  + CP+       L 
Sbjct: 66  NKITDTQIKFINHLKDIRKLGFYNVKISGSGLQSLTNLKHLQNLEFQNCPLEDDAFQHLK 125

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
              +L +L +    L+D        +  L+VL L   +I+D  L HL  L  L SLNL  
Sbjct: 126 QFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLEHLNNLKELNSLNLYQ 185

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSG----------------------------- 219
             I + GL +L+ L  LK LE+++T+V S+G                             
Sbjct: 186 TKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKILFDRPVLPAHLKVARQ 245

Query: 220 LRHLSGLTN---------LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 270
           ++ L G            L SI+LS   I D SL  L GLS LKSL L+   ++D GL  
Sbjct: 246 VKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLNQTSVSDQGLQI 305

Query: 271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
           L  L GLT L +  + ITD+   +L     L SL +    +TDAG++H
Sbjct: 306 LNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLARTAVTDAGMEH 353



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 160/324 (49%), Gaps = 15/324 (4%)

Query: 85  LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
           + S+  + +K+TD+ I ++  L+ +  L      ++ + L SL+ L  L  L    C L 
Sbjct: 58  IDSVSFTNNKITDTQIKFINHLKDIRKLGFYNVKISGSGLQSLTNLKHLQNLEFQNCPLE 117

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
           DD  +   +  +L  L +    +TD+CLVHLK LT LE L L +  I D GL +L  L  
Sbjct: 118 DDAFQHLKQFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLEHLNNLKE 177

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD----- 259
           L  L L  T++ ++GL HLS L  L+ + ++ T ++   + +L        +  D     
Sbjct: 178 LNSLNLYQTKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKILFDRPVLP 237

Query: 260 -----ARQITDTG----LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
                ARQ+   G       L     L+ + L    I D   A L+    L+SL +    
Sbjct: 238 AHLKVARQVKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLNQTS 297

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           ++D G++ + +L  LT L + Q+  +TD  L  ++GL+ L SLN++ + +T AG+ H+  
Sbjct: 298 VSDQGLQILNELKGLTSLTIMQSP-ITDAALPHLTGLSRLTSLNLARTAVTDAGMEHIIK 356

Query: 371 LKNLRSLTLESCKVTANDIKRLQS 394
           LK L+ L L S  VT+  + R+ +
Sbjct: 357 LKQLKKLNLISTGVTSAGMARVHA 380



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 193/443 (43%), Gaps = 79/443 (17%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            L+GL  L  L     + +T  G+K    +  L  L L        GL  L  L KLE L 
Sbjct: 831  LNGLKTLYELDVAGAD-LTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQ 889

Query: 65   IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
            I+    IT+  +  L  +T LK   +  +++T+ G+ +L GL  L +LNL    + +  +
Sbjct: 890  IENAG-ITNDQLIQLKEMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGM 948

Query: 125  DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
              L++L +L  L L   +++D G E   ++  L  L L    ITD     L+ +T+L  L
Sbjct: 949  VHLASLENLRSLALEHTRVADQGLEDLLRLPRLNTLILDGTTITDGGTPLLRKMTSLGML 1008

Query: 185  NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR----------------------- 221
            +L+S  I D GL +L  L  L  L+L+DT+V   G++                       
Sbjct: 1009 SLNSTYITDRGLKDLETLRGLYRLDLNDTKVSEDGVKNFQRSQPKCNIEYAAPLASSLQY 1068

Query: 222  ------------------------------HLSGLTNLESINLSFTGISDGSLRKLAGLS 251
                                          HL G+  + +       + D  L++++ + 
Sbjct: 1069 VIQELKEAGANVNVINQGHHYVIESVEFPNHLQGIFAIHN-RAEKAKVFDSCLKRISEMK 1127

Query: 252  SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
             LK L++   +  +T L  + +LT L+ LDL G+RI D G   L+   NL+ L++    +
Sbjct: 1128 DLKRLSMHWAEFDNTKLEYIKNLTYLSELDLSGSRIPDQGIKDLKGLVNLQKLKLEHTQI 1187

Query: 312  TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
            TDAGV  +  L                        L  L SL++ +S+ T+A L  LK +
Sbjct: 1188 TDAGVAQLAQLQ-----------------------LNRLYSLDLDHSKTTAACLESLKDM 1224

Query: 372  KNLRSLTLESCKVTANDIKRLQS 394
            + LR L+L+  +++A D+++ + 
Sbjct: 1225 QRLRFLSLQHLELSAADLEKFKQ 1247



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 205/438 (46%), Gaps = 70/438 (15%)

Query: 3   ENLSGLSNLTSLSFR----RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 58
           ++L+ L +L +L F+     ++A   Q +K F  L +L    +         LV+LK L 
Sbjct: 98  QSLTNLKHLQNLEFQNCPLEDDAF--QHLKQFPALTHLF---VRHVPLTDQCLVHLKDLT 152

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           +LE L + +   I+DS ++ L+ L  L SL +  +K++++G+ +L  L+KL  L +    
Sbjct: 153 QLEVLWL-FATQISDSGLEHLNNLKELNSLNLYQTKISNAGLTHLSELKKLKQLEVNETK 211

Query: 119 VTAACL----DSLSALGSLF-------YLNLNRCQLSDDGCEKFSKIGSLKVLN---LGF 164
           VT+A +    +++     LF       +L + R   S  G  ++  +   ++L+   L  
Sbjct: 212 VTSAGVAELQEAIPECKILFDRPVLPAHLKVARQVKSLGGFVRYQDLDQHRLLSSISLSR 271

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
             I D+ L  LKGL+ L+SL L+   + D+GL  L  L  L  L +  + +  + L HL+
Sbjct: 272 PHIDDKSLACLKGLSGLKSLTLNQTSVSDQGLQILNELKGLTSLTIMQSPITDAALPHLT 331

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
           GL+ L S+NL+ T ++D  +  +  L  LK LNL +  +T  G+A + +   L    +  
Sbjct: 332 GLSRLTSLNLARTAVTDAGMEHIIKLKQLKKLNLISTGVTSAGMARVHA--ALPKCKIET 389

Query: 285 ARITDSG---------------AAYLRN---FKN-------LRSLEICGGGLTDAGVKHI 319
            + T  G                A+++N   FKN         S+   G  + DA VKH+
Sbjct: 390 GKATAPGDSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHL 449

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           K +  L  ++   + ++TD     +SGL+ L +L +  + IT  GL              
Sbjct: 450 KHVPRLKSVSFI-STSITDDCTRHLSGLSELETLQLPGTAITDKGL-------------- 494

Query: 380 ESCKVTANDIKRLQSRDL 397
                T ND+K L++ DL
Sbjct: 495 ----ATLNDLKSLENLDL 508


>gi|46447144|ref|YP_008509.1| hypothetical protein pc1510 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400785|emb|CAF24234.1| hypothetical protein pc1510 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 670

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 206/381 (54%), Gaps = 10/381 (2%)

Query: 13  SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCI 71
           +L+F  N  +T   + A     NL  L L++C  +   GL +L  L+ L+ L++  C+ +
Sbjct: 270 ALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLPHLTPLVALQYLDLSKCHNL 329

Query: 72  TDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           TD+ +  L+ L  L  L +  C  +TD+G+A+LK L  L  LNL  C  T A L  L+ L
Sbjct: 330 TDAGLTHLTFLDALNYLGLGECYNLTDTGLAHLKSLINLQHLNLNNCNFTDAGLAHLTPL 389

Query: 131 GSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDS 188
            +L YLNL++C  L+D G    + + +L+ LNL     +TD  L +L  L  L+ LNL+ 
Sbjct: 390 VTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCTNLTDTGLAYLSPLVTLQHLNLNV 449

Query: 189 CGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRK 246
           C + D GL +LT L NL+ L LS  T +  +GL HLS L  L+ ++L     ++D  L  
Sbjct: 450 CKLIDAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLSTLVTLQHLDLDGCYKLTDIGLAH 509

Query: 247 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSL 304
           L  L +LK LNL     +T  GLA LT L  L HLDL +   + D+G A+L     L+ L
Sbjct: 510 LTPLVTLKYLNLSCCHNLTGAGLAHLTPLVALKHLDLSWNGDLEDAGLAHLTPLVALKYL 569

Query: 305 EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITS 362
           ++     LTDAG+ H++ L +L  L+L     LTD  +  ++ L  L  L++     +T 
Sbjct: 570 DLSECYHLTDAGLAHLRSLVALKHLDLRGCYQLTDAGIAHLTPLVALKYLDLKGCPNLTD 629

Query: 363 AGLRHLKPLKNLRSLTLESCK 383
           AGL HL  L  L+ L L +C+
Sbjct: 630 AGLAHLTSLIALQDLELPNCQ 650



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 198/379 (52%), Gaps = 10/379 (2%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWC 68
           NL  L  ++   +T  G+     L+ L  LDL +C  +   GL +L  L  L  L +  C
Sbjct: 292 NLKVLYLKKCCNLTDAGLPHLTPLVALQYLDLSKCHNLTDAGLTHLTFLDALNYLGLGEC 351

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 127
             +TD+ +  L  L NL+ L ++    TD+G+A+L  L  L  LNL  C  +T A L  L
Sbjct: 352 YNLTDTGLAHLKSLINLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHL 411

Query: 128 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           + L +L  LNL+ C  L+D G    S + +L+ LNL   ++ D  L HL  L NL+ LNL
Sbjct: 412 TPLVNLQQLNLSDCTNLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNL 471

Query: 187 DSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGS 243
             C  + D GL +L+ L  L+ L+L    ++   GL HL+ L  L+ +NLS    ++   
Sbjct: 472 SYCTNLTDAGLAHLSTLVTLQHLDLDGCYKLTDIGLAHLTPLVTLKYLNLSCCHNLTGAG 531

Query: 244 LRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNL 301
           L  L  L +LK L+L     + D GLA LT L  L +LDL     +TD+G A+LR+   L
Sbjct: 532 LAHLTPLVALKHLDLSWNGDLEDAGLAHLTPLVALKYLDLSECYHLTDAGLAHLRSLVAL 591

Query: 302 RSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SR 359
           + L++ G   LTDAG+ H+  L +L  L+L    NLTD  L  ++ L  L  L + N  R
Sbjct: 592 KHLDLRGCYQLTDAGIAHLTPLVALKYLDLKGCPNLTDAGLAHLTSLIALQDLELPNCQR 651

Query: 360 ITSAGLRHLKPLKNLRSLT 378
           IT AGL HL     LR  T
Sbjct: 652 ITDAGLAHLASSMTLRIWT 670



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 173/332 (52%), Gaps = 34/332 (10%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L  L NL  L+    N  T  G+     L+ L  L+L +C  +   GL +L  L+ L+ 
Sbjct: 361 HLKSLINLQHLNLNNCN-FTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPLVNLQQ 419

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTA 121
           LN+  C  +TD+ +  LS L  L+ L ++  K+ D+G+A+L  L  L  LNL  C  +T 
Sbjct: 420 LNLSDCTNLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYCTNLTD 479

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           A L  LS L +L +L+L       DGC K + IG                L HL  L  L
Sbjct: 480 AGLAHLSTLVTLQHLDL-------DGCYKLTDIG----------------LAHLTPLVTL 516

Query: 182 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSF-TG 238
           + LNL  C  +   GL +LT L  LK L+LS +  +  +GL HL+ L  L+ ++LS    
Sbjct: 517 KYLNLSCCHNLTGAGLAHLTPLVALKHLDLSWNGDLEDAGLAHLTPLVALKYLDLSECYH 576

Query: 239 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLR 296
           ++D  L  L  L +LK L+L    Q+TD G+A LT L  L +LDL G   +TD+G A+L 
Sbjct: 577 LTDAGLAHLRSLVALKHLDLRGCYQLTDAGIAHLTPLVALKYLDLKGCPNLTDAGLAHLT 636

Query: 297 NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 327
           +   L+ LE+     +TDAG+ H+   SS+TL
Sbjct: 637 SLIALQDLELPNCQRITDAGLAHLA--SSMTL 666



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 135/258 (52%), Gaps = 7/258 (2%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +L+ L NL  L+      +T  G+   + L+ L  L+L  C  I  GL +L  L+ L+ L
Sbjct: 410 HLTPLVNLQQLNLSDCTNLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQL 469

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTA 121
           N+ +C  +TD+ +  LS L  L+ L +  C K+TD G+A+L  L  L  LNL  C  +T 
Sbjct: 470 NLSYCTNLTDAGLAHLSTLVTLQHLDLDGCYKLTDIGLAHLTPLVTLKYLNLSCCHNLTG 529

Query: 122 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 179
           A L  L+ L +L +L+L+    L D G    + + +LK L+L     +TD  L HL+ L 
Sbjct: 530 AGLAHLTPLVALKHLDLSWNGDLEDAGLAHLTPLVALKYLDLSECYHLTDAGLAHLRSLV 589

Query: 180 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-F 236
            L+ L+L  C  + D G+ +LT L  LK L+L     +  +GL HL+ L  L+ + L   
Sbjct: 590 ALKHLDLRGCYQLTDAGIAHLTPLVALKYLDLKGCPNLTDAGLAHLTSLIALQDLELPNC 649

Query: 237 TGISDGSLRKLAGLSSLK 254
             I+D  L  LA   +L+
Sbjct: 650 QRITDAGLAHLASSMTLR 667



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/240 (37%), Positives = 118/240 (49%), Gaps = 29/240 (12%)

Query: 149 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
           EK     S +V  L F+E   +TD  L+ LK   NL+ L L  C             CNL
Sbjct: 258 EKILNYFSNEVEALNFSENAHLTDAHLLALKTCKNLKVLYLKKC-------------CNL 304

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQI 263
                       +GL HL+ L  L+ ++LS    ++D  L  L  L +L  L L +   +
Sbjct: 305 T----------DAGLPHLTPLVALQYLDLSKCHNLTDAGLTHLTFLDALNYLGLGECYNL 354

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 322
           TDTGLA L SL  L HL+L     TD+G A+L     L+ L +     LTDAG+ H+  L
Sbjct: 355 TDTGLAHLKSLINLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPL 414

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
            +L  LNLS   NLTD  L  +S L  L  LN++  ++  AGL HL PL NL+ L L  C
Sbjct: 415 VNLQQLNLSDCTNLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYC 474



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 18/111 (16%)

Query: 285 ARITDSGAAYLRNFKNLRSLEI---CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
           A +TD+    L+  KNL+ L +   C   LTDAG+ H+  L +L  L+LS+  NLTD   
Sbjct: 277 AHLTDAHLLALKTCKNLKVLYLKKCCN--LTDAGLPHLTPLVALQYLDLSKCHNLTD--- 331

Query: 342 ELISGLTGLVSLNVSNS-------RITSAGLRHLKPLKNLRSLTLESCKVT 385
              +GLT L  L+  N         +T  GL HLK L NL+ L L +C  T
Sbjct: 332 ---AGLTHLTFLDALNYLGLGECYNLTDTGLAHLKSLINLQHLNLNNCNFT 379


>gi|46446906|ref|YP_008271.1| hypothetical protein pc1272 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400547|emb|CAF23996.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 618

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 137/334 (41%), Positives = 183/334 (54%), Gaps = 10/334 (2%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 117
           ++E LN      +TD+ +  L    NLK L +  C  +TD+G+AYL  L  L  LNL GC
Sbjct: 227 EIEELNFSKNASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQHLNLAGC 286

Query: 118 PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL 175
               A L  L+ L +L +LNL+ C+ L+D G    + + +L  LNL     ITD  L HL
Sbjct: 287 KFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYLNLSHCRNITDAGLAHL 346

Query: 176 KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 233
             LT L  LNL SC  + D GL +LT L  L  L LS    +  +GL HL+ L  L  +N
Sbjct: 347 TPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLVTLTHLN 406

Query: 234 LSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDS 290
           LS+    +D  L  L  L +L+ L+L   R ITD GLA LT L  LTHL+L +    TD+
Sbjct: 407 LSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSWCYNFTDA 466

Query: 291 GAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
           G A+L     L+ L++ G   LTDAG+ H+  L +LT L+LS   +LTD  L  ++ L  
Sbjct: 467 GLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVA 526

Query: 350 LVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 382
           L  L++S  R +T AGL HL PL  L  L L SC
Sbjct: 527 LQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSC 560



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 190/379 (50%), Gaps = 32/379 (8%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 69
           NL  L  +    +T  G+     L  L  L+L  C   + GL +L  L+ L+ LN+  C 
Sbjct: 252 NLKVLHLQECRNLTDAGLAYLTPLTTLQHLNLAGCKFANAGLAHLTPLVALQHLNLSHCR 311

Query: 70  CITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSL 127
            +TD+ +  L+ LT L  L +S C  +TD+G+A+L  L  LT LNL  C  +T A L  L
Sbjct: 312 NLTDAGLPHLTLLTALTYLNLSHCRNITDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHL 371

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           + L +L YLNL+ C                       N +TD  L HL  L  L  LNL 
Sbjct: 372 TPLTALTYLNLSSC-----------------------NNLTDAGLAHLTPLVTLTHLNLS 408

Query: 188 SC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSL 244
            C    D GL +LT L  L+ L+L   + +  +GL HL+ L  L  +NLS+    +D  L
Sbjct: 409 WCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSWCYNFTDAGL 468

Query: 245 RKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLR 302
             LA L +L+ L+L+   Q+TD GLA L  L  LTHLDL     +TD+G  +L     L+
Sbjct: 469 AHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVALQ 528

Query: 303 SLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRI 360
            L++     LTDAG+ H+  L +LT LNLS   + TD  L  ++ L  L  LN++     
Sbjct: 529 HLDLSYCRNLTDAGLAHLAPLVALTHLNLSSCNHFTDAGLTHLTPLLALQDLNLNYCENF 588

Query: 361 TSAGLRHLKPLKNLRSLTL 379
           T AGL H K L    +L L
Sbjct: 589 TDAGLAHFKSLATFPNLNL 607



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%)

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
              LTDA +  +K+  +L +L+L +  NLTD  L  ++ LT L  LN++  +  +AGL H
Sbjct: 236 NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQHLNLAGCKFANAGLAH 295

Query: 368 LKPLKNLRSLTLESCK 383
           L PL  L+ L L  C+
Sbjct: 296 LTPLVALQHLNLSHCR 311



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 11/98 (11%)

Query: 6   SGLSNLTSL--------SFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKG 56
           +GL +LT L        S+ RN  +T  G+   A L+ L  L+L  C      GL +L  
Sbjct: 516 AGLPHLTPLVALQHLDLSYCRN--LTDAGLAHLAPLVALTHLNLSSCNHFTDAGLTHLTP 573

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 94
           L+ L+ LN+ +C   TD+ +     L    +L + C +
Sbjct: 574 LLALQDLNLNYCENFTDAGLAHFKSLATFPNLNLICYQ 611


>gi|46447588|ref|YP_008953.1| hypothetical protein pc1954 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401229|emb|CAF24678.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 704

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 139/392 (35%), Positives = 210/392 (53%), Gaps = 12/392 (3%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKW 67
            NL  L      AIT  G+     L  L  LD+  C  +   GL  L  L  L+ LN+  
Sbjct: 219 ENLKVLHLNACQAITDDGLAHLTPLTGLQHLDIRVCEYLTDDGLAYLTSLTGLQHLNLSG 278

Query: 68  CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLD 125
           C  +TD+ +  L+ LT L+ L +  C  +T +G+A+LK L+ L  L+L  C  +T   L 
Sbjct: 279 CYHLTDTGLAHLTPLTGLQHLDLRICEYLTATGLAHLKPLKALQHLDLSYCKNLTNVGLS 338

Query: 126 SLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLES 183
            L+ L +L +L+L+ C QL+D G    + +  L+ L+L G++++TD  L HL  LT L+ 
Sbjct: 339 HLAPLTALQHLDLSYCWQLADAGLVYLTPLTGLQHLDLSGYHKLTDAGLAHLTPLTALQC 398

Query: 184 LNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGIS 240
           L+L  C  + D GL +L  L  L+ L L + + +   GL HL+ LT L+ ++LS+   ++
Sbjct: 399 LDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDGLAHLAPLTALQHLDLSYCWQLT 458

Query: 241 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNF 298
           D  L  L  L+ L+ L+L     +TD GLA L  L  L HL+L   R +TD G  +L   
Sbjct: 459 DAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPLKALQHLNLRNCRNLTDDGLVHLAPL 518

Query: 299 KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
             L+ L++     LTDAG+ H+  L++L  L+L    NLT   L  ++ LTGL  L++S 
Sbjct: 519 TALQHLDLSDCNNLTDAGLAHLTPLTALQHLDLKYCINLTGAGLAHLAFLTGLQYLDLSW 578

Query: 358 SR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 388
            + +  AGL HLK L  L+ L L  C+   +D
Sbjct: 579 CKNLIDAGLVHLKLLTALQYLGLSYCENLTDD 610



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 142/391 (36%), Positives = 214/391 (54%), Gaps = 12/391 (3%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESL 63
           L+ L+ L  L+      +T  G+     L  L  LDL  C  +   GL +LK L  L+ L
Sbjct: 265 LTSLTGLQHLNLSGCYHLTDTGLAHLTPLTGLQHLDLRICEYLTATGLAHLKPLKALQHL 324

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTA 121
           ++ +C  +T+  +  L+ LT L+ L +S C ++ D+G+ YL  L  L  L+L G   +T 
Sbjct: 325 DLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTPLTGLQHLDLSGYHKLTD 384

Query: 122 ACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLT 179
           A L  L+ L +L  L+L+ C+ L+D G      + +L+ LNL     +TD+ L HL  LT
Sbjct: 385 AGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDGLAHLAPLT 444

Query: 180 NLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL-SF 236
            L+ L+L  C  + D GL +LT L  L+ L+LS  + +   GL HL  L  L+ +NL + 
Sbjct: 445 ALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPLKALQHLNLRNC 504

Query: 237 TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAY 294
             ++D  L  LA L++L+ L+L D   +TD GLA LT LT L HLDL +   +T +G A+
Sbjct: 505 RNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQHLDLKYCINLTGAGLAH 564

Query: 295 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
           L     L+ L++     L DAG+ H+K L++L  L LS   NLTD  L  +  LT L  L
Sbjct: 565 LAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENLTDDGLAHLRSLTALQHL 624

Query: 354 NVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 383
            + + + +T AGL HL+ L +L+ L L  C+
Sbjct: 625 ALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQ 655



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 138/387 (35%), Positives = 207/387 (53%), Gaps = 15/387 (3%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L  L  L  L       +T  G+   A L  L  LDL  C ++   GLV L  L  L+ 
Sbjct: 314 HLKPLKALQHLDLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTPLTGLQH 373

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           L++   + +TD+ +  L+ LT L+ L +S C  +TD G+A+L  L+ L  LNL  C  +T
Sbjct: 374 LDLSGYHKLTDAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLT 433

Query: 121 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGL 178
              L  L+ L +L +L+L+ C QL+D G    + +  L+ L+L + E +TD  L HL  L
Sbjct: 434 DDGLAHLAPLTALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPL 493

Query: 179 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 236
             L+ LNL +C  + D+GLV+L  L  L+ L+LSD   +  +GL HL+ LT L+ ++L +
Sbjct: 494 KALQHLNLRNCRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQHLDLKY 553

Query: 237 -TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 293
              ++   L  LA L+ L+ L+L   + + D GL  L  LT L +L L +   +TD G A
Sbjct: 554 CINLTGAGLAHLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENLTDDGLA 613

Query: 294 YLRNFKNLRSLE-ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
           +LR+   L+ L  I    LTDAG+ H++ L+SL  L+L    NLT   L  +  LT L  
Sbjct: 614 HLRSLTALQHLALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQNLTGDGLAHLRTLTALQY 673

Query: 353 LNVSNSR-ITSAGLRHLKPLK---NLR 375
           L ++  + +T  GL   K L    NLR
Sbjct: 674 LALTQYKNLTDDGLARFKTLASSTNLR 700



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 127/343 (37%), Positives = 176/343 (51%), Gaps = 32/343 (9%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 107
             L+ L+    L+ L++  C  ITD  +  L+ LT L+ L I  C  +TD G+AYL  L 
Sbjct: 210 AHLLTLRNCENLKVLHLNACQAITDDGLAHLTPLTGLQHLDIRVCEYLTDDGLAYLTSLT 269

Query: 108 KLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF- 164
            L  LNL GC  +T   L  L+ L  L +L+L  C+ L+  G      + +L+ L+L + 
Sbjct: 270 GLQHLNLSGCYHLTDTGLAHLTPLTGLQHLDLRICEYLTATGLAHLKPLKALQHLDLSYC 329

Query: 165 NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRH 222
             +T+  L HL  LT L+ L+L  C  + D GLV LT L  L+ L+LS    +  +GL H
Sbjct: 330 KNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTPLTGLQHLDLSGYHKLTDAGLAH 389

Query: 223 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHL 280
           L+ LT L+ ++LS+   ++D  L  L  L +L+ LNL + R +TD GLA L  LT L HL
Sbjct: 390 LTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDGLAHLAPLTALQHL 449

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
           DL                        C   LTDAG+ H+  L+ L  L+LS   NLTD  
Sbjct: 450 DL----------------------SYCWQ-LTDAGLAHLTPLTGLQRLDLSYCENLTDVG 486

Query: 341 LELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 382
           L  +  L  L  LN+ N R +T  GL HL PL  L+ L L  C
Sbjct: 487 LAHLIPLKALQHLNLRNCRNLTDDGLVHLAPLTALQHLDLSDC 529


>gi|168701673|ref|ZP_02733950.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 367

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/298 (36%), Positives = 170/298 (57%), Gaps = 2/298 (0%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           +TD  +K L+GL NL  L +  + VTD+G+  L GL+ LT L+L    VT A +  L+AL
Sbjct: 61  VTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAGMKELAAL 120

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            +L  L L+   ++D G ++ + +  L  L+L   ++TD  L  L  L  L ++ L++  
Sbjct: 121 NNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTIRLNNTE 180

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           + D GL  L  L  L  L+LS T+V  +GL+ L+ L  L  + L  T ++D  L++LAGL
Sbjct: 181 VTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKELAGL 240

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
            +L  L+L    +TD GL  L +L  LTHL LFG ++T  G   L   K L +L +    
Sbjct: 241 -NLTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGLTTLYLNNTK 299

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
           +TDAGVK +  L  LT L+LS    +TD  ++ ++GL GL +L +  +++T AG++ L
Sbjct: 300 VTDAGVKELSGLKGLTTLDLSY-TEMTDAGVKALAGLKGLTNLELYGTKVTDAGVKEL 356



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 169/306 (55%), Gaps = 5/306 (1%)

Query: 14  LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 73
           LSF R   +T +G+K  AGL NL  L+L        G+  L GL  L +L++     +TD
Sbjct: 56  LSFTR---VTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLN-STSVTD 111

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           + MK L+ L NL +L++S   VTD+G+  L  L+KL  L+L    VT A L  L+AL  L
Sbjct: 112 AGMKELAALNNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGL 171

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             + LN  +++D G ++ + +  L  L+L   ++TD  L  L  L  L  L L    + D
Sbjct: 172 TTIRLNNTEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTD 231

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
            GL  L GL NL  L L+ T V  +GL+ L+ L NL  + L  T ++   L++L+GL  L
Sbjct: 232 AGLKELAGL-NLTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGL 290

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
            +L L+  ++TD G+  L+ L GLT LDL    +TD+G   L   K L +LE+ G  +TD
Sbjct: 291 TTLYLNNTKVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNLELYGTKVTD 350

Query: 314 AGVKHI 319
           AGVK +
Sbjct: 351 AGVKEL 356



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/312 (36%), Positives = 170/312 (54%), Gaps = 3/312 (0%)

Query: 88  LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 147
           + +S ++VTD G+  L GL+ LT LNL    VT A +  L+ L  L  L+LN   ++D G
Sbjct: 54  VYLSFTRVTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAG 113

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
            ++ + + +L  L L    +TD  L  L  L  L +L+L    + D GL  L  L  L  
Sbjct: 114 MKELAALNNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTT 173

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267
           + L++T+V  +GL+ L+ L  L  ++LS T ++D  L++LA L  L  L L   ++TD G
Sbjct: 174 IRLNNTEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAG 233

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
           L  L  L  LT L L G  +TD+G   L   KNL  L + G  +T  G+K +  L  LT 
Sbjct: 234 LKELAGLN-LTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGLTT 292

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387
           L L+ N  +TD  ++ +SGL GL +L++S + +T AG++ L  LK L +L L   KVT  
Sbjct: 293 LYLN-NTKVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNLELYGTKVTDA 351

Query: 388 DIKRLQSRDLPN 399
            +K L S  LP 
Sbjct: 352 GVKELNSA-LPK 362



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 27/112 (24%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + LSGL  LT+L +  N  +T  G+K  +GL  L  LDL                     
Sbjct: 282 KELSGLKGLTTL-YLNNTKVTDAGVKELSGLKGLTTLDLSYTE----------------- 323

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLN 113
                   +TD+ +K L+GL  L +L++  +KVTD+G+  L   L K  +LN
Sbjct: 324 --------MTDAGVKALAGLKGLTNLELYGTKVTDAGVKELNSALPKCKILN 367


>gi|414586495|tpg|DAA37066.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
          Length = 115

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 80/112 (71%), Positives = 99/112 (88%)

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
            R FKN++SLE+CGG +TDAGVK+IKDL +LTLLNLSQN  LTDKTLELISGLT LVSLN
Sbjct: 4   FRFFKNIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLN 63

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           VSNSR++++GL HLKPL+NLRSL+LESC+VTA+++ +L+   LPNL+S RPE
Sbjct: 64  VSNSRVSNSGLHHLKPLQNLRSLSLESCRVTASEMDKLRLVALPNLISVRPE 115



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 51/79 (64%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
            G+ N+K L  L  LN+     +TD  ++ +SGLT L SL +S S+V++SG+ +LK LQ 
Sbjct: 23  AGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKPLQN 82

Query: 109 LTLLNLEGCPVTAACLDSL 127
           L  L+LE C VTA+ +D L
Sbjct: 83  LRSLSLESCRVTASEMDKL 101



 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 25/109 (22%)

Query: 84  NLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ 142
           N++SL++    +TD+G+  +K L+ LTLLNL +   +T   L+ +S L +L  LN++  +
Sbjct: 9   NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +S+ G                        L HLK L NL SL+L+SC +
Sbjct: 69  VSNSG------------------------LHHLKPLQNLRSLSLESCRV 93



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQ 262
           N++ LE+    +  +G++++  L  L  +NLS  G ++D +L  ++GL++L SLN+   +
Sbjct: 9   NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
           ++++GL  L  L  L  L L   R+T S    LR
Sbjct: 69  VSNSGLHHLKPLQNLRSLSLESCRVTASEMDKLR 102



 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGAR 286
           N++S+ +    I+D  ++ +  L +L  LNL    ++TD  L  ++ LT L  L++  +R
Sbjct: 9   NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68

Query: 287 ITDSGAAYLRNFKNLRSLEI 306
           +++SG  +L+  +NLRSL +
Sbjct: 69  VSNSGLHHLKPLQNLRSLSL 88



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 5/102 (4%)

Query: 148 CEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNL 205
           C +F K I SL+V   G   ITD  + ++K L  L  LNL   G + D+ L  ++GL  L
Sbjct: 3   CFRFFKNIQSLEVCG-GL--ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTAL 59

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
             L +S+++V +SGL HL  L NL S++L    ++   + KL
Sbjct: 60  VSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCRVTASEMDKL 101


>gi|46446377|ref|YP_007742.1| hypothetical protein pc0743 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400018|emb|CAF23467.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 765

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 206/409 (50%), Gaps = 35/409 (8%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 68
            NL  L+ +  + +T  G+     L  L  LDL  C     GLV+L  L  L+ L++  C
Sbjct: 283 ENLKVLNLQACHNLTDAGLAHLTPLAALKHLDLSGCELTDDGLVHLTPLAALQHLDLSHC 342

Query: 69  NCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK---GLQKLTL------------- 111
              TD+ +  L  L  L+ L +S C K+TD+G+A+LK    LQ L L             
Sbjct: 343 RNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKLLVALQHLDLSHCRNFTDAGLAH 402

Query: 112 ---------LNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVL 160
                    LNL  C  +T A L  L+ L +L +L+LN C  L+D G    + +  L+ L
Sbjct: 403 LKLLVALQHLNLSYCGNLTDAGLAHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYL 462

Query: 161 NLGFN-EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           NL +N   TD  L HL  L  L+ LNL  CG   D GL +LT L  LK L+L   ++   
Sbjct: 463 NLSWNYNFTDAGLAHLTPLMALQHLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDD 522

Query: 219 GLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG 276
           GL HL  L  L+ +NLS+ G ++D  L  L  L +L+ L+L    ++T  GLA L  L  
Sbjct: 523 GLAHLKLLVALQHLNLSYCGKLTDDGLAHLKLLVALQHLDLSGCDKLTGAGLAHLKFLVA 582

Query: 277 LTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 334
           L HL+L    ++TD G   L     LR L++   G LT AG+ H+K L +L  LNLS   
Sbjct: 583 LQHLNLSHCGKLTDDGLVNLTPLAALRHLDLSHCGKLTGAGLAHLKFLVALQHLNLSHCG 642

Query: 335 NLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 382
            LTD  L  +S L  L  L++S+   +T AGL +L PL  L+ L L  C
Sbjct: 643 KLTDAGLVNLSPLMALQHLDLSHCGNLTDAGLVNLSPLMALQHLDLSHC 691



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 135/355 (38%), Positives = 192/355 (54%), Gaps = 10/355 (2%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
             L+ LK    L+ LN++ C+ +TD+ +  L+ L  LK L +S  ++TD G+ +L  L  
Sbjct: 274 AHLLALKNCENLKVLNLQACHNLTDAGLAHLTPLAALKHLDLSGCELTDDGLVHLTPLAA 333

Query: 109 LTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-N 165
           L  L+L  C   T A L  L  L +L +LNL+ C +L+D G      + +L+ L+L    
Sbjct: 334 LQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKLLVALQHLDLSHCR 393

Query: 166 EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHL 223
             TD  L HLK L  L+ LNL  CG + D GL +LT L  L+ L+L+    +  +GL HL
Sbjct: 394 NFTDAGLAHLKLLVALQHLNLSYCGNLTDAGLAHLTPLMALQHLDLNGCHNLTDAGLTHL 453

Query: 224 SGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLD 281
           + L  L+ +NLS+    +D  L  L  L +L+ LNL      TD GLA LTSL  L HLD
Sbjct: 454 TSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYCGNFTDAGLAHLTSLAALKHLD 513

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
           L G  +TD G A+L+    L+ L +   G LTD G+ H+K L +L  L+LS    LT   
Sbjct: 514 LIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHLKLLVALQHLDLSGCDKLTGAG 573

Query: 341 LELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQ 393
           L  +  L  L  LN+S+  ++T  GL +L PL  LR L L  C K+T   +  L+
Sbjct: 574 LAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLDLSHCGKLTGAGLAHLK 628



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 138/385 (35%), Positives = 207/385 (53%), Gaps = 11/385 (2%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L  L  L  L+      +T  G+     L+ L  LDL  C      GL +LK L+ L+ 
Sbjct: 352 HLKLLVALQHLNLSHCGKLTDAGLAHLKLLVALQHLDLSHCRNFTDAGLAHLKLLVALQH 411

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEG-CPVT 120
           LN+ +C  +TD+ +  L+ L  L+ L ++ C  +TD+G+ +L  L  L  LNL      T
Sbjct: 412 LNLSYCGNLTDAGLAHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFT 471

Query: 121 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
            A L  L+ L +L +LNL+ C   +D G    + + +LK L+L   E+TD+ L HLK L 
Sbjct: 472 DAGLAHLTPLMALQHLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLV 531

Query: 180 NLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFT 237
            L+ LNL  CG + D+GL +L  L  L+ L+LS   ++  +GL HL  L  L+ +NLS  
Sbjct: 532 ALQHLNLSYCGKLTDDGLAHLKLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHC 591

Query: 238 G-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAY 294
           G ++D  L  L  L++L+ L+L    ++T  GLA L  L  L HL+L    ++TD+G   
Sbjct: 592 GKLTDDGLVNLTPLAALRHLDLSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVN 651

Query: 295 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
           L     L+ L++   G LTDAG+ ++  L +L  L+LS   NLTD  L  +  L  L  L
Sbjct: 652 LSPLMALQHLDLSHCGNLTDAGLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHL 711

Query: 354 NVSN-SRITSAGLRHLKPLKNLRSL 377
           ++S+   +T  GL HL PL  L+ L
Sbjct: 712 DLSHCGNLTDDGLAHLSPLIALQHL 736



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/341 (36%), Positives = 182/341 (53%), Gaps = 9/341 (2%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 115
           L ++E LN      +TD+ +  L    NLK L + +C  +TD+G+A+L  L  L  L+L 
Sbjct: 257 LNEIEELNFSKNAHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPLAALKHLDLS 316

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLV 173
           GC +T   L  L+ L +L +L+L+ C+  +D G      + +L+ LNL    ++TD  L 
Sbjct: 317 GCELTDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLA 376

Query: 174 HLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLES 231
           HLK L  L+ L+L  C    D GL +L  L  L+ L LS    +  +GL HL+ L  L+ 
Sbjct: 377 HLKLLVALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSYCGNLTDAGLAHLTPLMALQH 436

Query: 232 INLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARIT 288
           ++L+    ++D  L  L  L  L+ LNL      TD GLA LT L  L HL+L +    T
Sbjct: 437 LDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYCGNFT 496

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
           D+G A+L +   L+ L++ G  LTD G+ H+K L +L  LNLS    LTD  L  +  L 
Sbjct: 497 DAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHLKLLV 556

Query: 349 GLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
            L  L++S   ++T AGL HLK L  L+ L L  C    +D
Sbjct: 557 ALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDD 597



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 184/362 (50%), Gaps = 42/362 (11%)

Query: 6   SGLSNLTSLSFRRN------NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLM 58
           +GL++LT L   ++      + +T  G+     L+ L  L+L         GL +L  LM
Sbjct: 423 AGLAHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLM 482

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
            L+ LN+ +C   TD+ +  L+ L  LK L +   ++TD G+A+LK L  L  LNL  C 
Sbjct: 483 ALQHLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCG 542

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKG 177
                                  +L+DDG      + +L+ L+L G +++T   L HLK 
Sbjct: 543 -----------------------KLTDDGLAHLKLLVALQHLDLSGCDKLTGAGLAHLKF 579

Query: 178 LTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLS 235
           L  L+ LNL  CG + D+GLVNLT L  L+ L+LS   ++  +GL HL  L  L+ +NLS
Sbjct: 580 LVALQHLNLSHCGKLTDDGLVNLTPLAALRHLDLSHCGKLTGAGLAHLKFLVALQHLNLS 639

Query: 236 FTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGA 292
             G ++D  L  L+ L +L+ L+L     +TD GL  L+ L  L HLDL     +TD G 
Sbjct: 640 HCGKLTDAGLVNLSPLMALQHLDLSHCGNLTDAGLVNLSPLMALQHLDLSHCGNLTDDGL 699

Query: 293 AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
             L+    L+ L++   G LTD G+ H+  L +L  L+ S+  NLTD      SGL  L 
Sbjct: 700 VNLKFLVALQHLDLSHCGNLTDDGLAHLSPLIALQHLDRSKYNNLTDG-----SGLAHLT 754

Query: 352 SL 353
           SL
Sbjct: 755 SL 756



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 159/308 (51%), Gaps = 30/308 (9%)

Query: 93  SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 151
           + +TD+ +  LK  + L +LNL+ C  +T A L  L+ L +L +L+L+ C+L+DDG    
Sbjct: 269 AHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPLAALKHLDLSGCELTDDGLVHL 328

Query: 152 SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLE 209
           + + +L+ L+L      TD  L HLK L  L+ LNL  CG + D GL +L  L  L+ L+
Sbjct: 329 TPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKLLVALQHLD 388

Query: 210 LSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
           LS  +    +GL HL  L  L+ +NLS+ G                        +TD GL
Sbjct: 389 LSHCRNFTDAGLAHLKLLVALQHLNLSYCG-----------------------NLTDAGL 425

Query: 269 AALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLT 326
           A LT L  L HLDL G   +TD+G  +L +   L+ L +      TDAG+ H+  L +L 
Sbjct: 426 AHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQ 485

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT 385
            LNLS   N TD  L  ++ L  L  L++    +T  GL HLK L  L+ L L  C K+T
Sbjct: 486 HLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLT 545

Query: 386 ANDIKRLQ 393
            + +  L+
Sbjct: 546 DDGLAHLK 553



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 129/222 (58%), Gaps = 8/222 (3%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLS 80
           +T  G+     L+ L  LDL  C ++ G GL +LK L+ L+ LN+  C  +TD  +  L+
Sbjct: 544 LTDDGLAHLKLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLT 603

Query: 81  GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNL 138
            L  L+ L +S C K+T +G+A+LK L  L  LNL  C  +T A L +LS L +L +L+L
Sbjct: 604 PLAALRHLDLSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDL 663

Query: 139 NRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEG 195
           + C  L+D G    S + +L+ L+L     +TD+ LV+LK L  L+ L+L  CG + D+G
Sbjct: 664 SHCGNLTDAGLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLTDDG 723

Query: 196 LVNLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESINLS 235
           L +L+ L  L+ L+ S        SGL HL+ L +L+ ++LS
Sbjct: 724 LAHLSPLIALQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDLS 765


>gi|149174278|ref|ZP_01852905.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
 gi|148846823|gb|EDL61159.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
          Length = 1815

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 138/430 (32%), Positives = 212/430 (49%), Gaps = 41/430 (9%)

Query: 4    NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
            +L  L NL  L    + +I+   ++   GL  L+ L L  C     GL  LK L  L+ L
Sbjct: 1374 HLKDLKNLKILGLE-STSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVL 1432

Query: 64   NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLL-NLEGCPVTA 121
            ++     ITD  +K LSGL  L++L++  +KVT  GIA L K L    ++ + E  P+  
Sbjct: 1433 SLD-STPITDEGLKHLSGLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPIMT 1491

Query: 122  A----------------------------CLDSLSALGSLF-YLNLNRCQLSDDGCEKFS 152
            +                             ++ L     +F  ++L      D   ++ +
Sbjct: 1492 SDSPMTDREIAEWVIGMGGGIGIGFKLNYKIEELPTEPVIFNSVSLKNASFEDHDLQRLA 1551

Query: 153  KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 212
            K+ +LK L L    I+D  L +L+ + NLE + LD   I DEGL++L GL NL+ L LS 
Sbjct: 1552 KLKTLKYLFLESTSISDTGLQYLRQMQNLEEIFLDYTNITDEGLLHLRGLQNLRVLRLSK 1611

Query: 213  TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAAL 271
            T++   GL HL  L  L +I+++   I++  ++ +  L  L SLN+    Q+ DTGL  +
Sbjct: 1612 TKITGEGLGHLKDLPRLHTIDVNRAAITNSGMKAMGDLKQLTSLNISFNSQVDDTGLGYI 1671

Query: 272  TSLTGLTHLDLFG---ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
              LT L    LF     +ITD G  +L+  K L SL +   G+T  G++ +    SL+ L
Sbjct: 1672 EGLTKLEK--LFAHLVPKITDEGLKHLQGMKQLESLTLSSTGITTTGLEQLTKHESLSKL 1729

Query: 329  NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
            +L+ NC +TD  LE +  L  L  L +  + ++ AGL+HL  LK L +L L   KVT+  
Sbjct: 1730 DLT-NCKITDSGLEHLQDLKNLRDLRLDLTPVSDAGLQHLYSLKKLENLDLRETKVTSQG 1788

Query: 389  IKRLQSRDLP 398
            I  LQ + LP
Sbjct: 1789 IADLQ-KALP 1797



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 172/410 (41%), Gaps = 68/410 (16%)

Query: 49   GGLVNL--KGLMKLESLNIKWC---------NCITDSDMKPLSGLTNLKSLQISCSKVTD 97
            GG VN   K + K+E L  +             + D D+K L+GL  L  L +  + V+D
Sbjct: 1239 GGWVNTGGKSITKIEQLPTEPFVINFLDLKGTSVKDDDLKRLAGLKTLPKLNLENTLVSD 1298

Query: 98   SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
            +G+ YLK +  L  ++L G  +T      LS + SL  L +    +S+ G E+   +  L
Sbjct: 1299 TGLQYLKDI-PLNYISLIGTQITDKGFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQL 1357

Query: 158  ------------------------KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
                                    K+L L    I+D  L HL GL  L  L L +C I D
Sbjct: 1358 EKLSFTNTQIDGVGLGHLKDLKNLKILGLESTSISDVDLQHLHGLKILIVLGLSNCKIAD 1417

Query: 194  EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD---GSLR----- 245
             GL  L  L NLK L L  T +   GL+HLSGL  L+++ L  T ++     SL+     
Sbjct: 1418 SGLAYLKDLKNLKVLSLDSTPITDEGLKHLSGLKMLQTLELQKTKVTPQGIASLQKALPN 1477

Query: 246  -KLAGLSSLKSLNLDARQITDTGLAAL----------------------TSLTGLTHLDL 282
             K+      K +      +TD  +A                        T       + L
Sbjct: 1478 CKIVSDFETKPIMTSDSPMTDREIAEWVIGMGGGIGIGFKLNYKIEELPTEPVIFNSVSL 1537

Query: 283  FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
              A   D     L   K L+ L +    ++D G+++++ + +L  + L    N+TD+ L 
Sbjct: 1538 KNASFEDHDLQRLAKLKTLKYLFLESTSISDTGLQYLRQMQNLEEIFLDY-TNITDEGLL 1596

Query: 343  LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
             + GL  L  L +S ++IT  GL HLK L  L ++ +    +T + +K +
Sbjct: 1597 HLRGLQNLRVLRLSKTKITGEGLGHLKDLPRLHTIDVNRAAITNSGMKAM 1646



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 147/324 (45%), Gaps = 37/324 (11%)

Query: 109  LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
            +  L+L+G  V    L  L+ L +L  LNL    +SD G +    I  L  ++L   +IT
Sbjct: 1262 INFLDLKGTSVKDDDLKRLAGLKTLPKLNLENTLVSDTGLQYLKDI-PLNYISLIGTQIT 1320

Query: 169  DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
            D+   +L  + +L +L + S  I + G+  L  +  L+ L  ++TQ+   GL HL  L N
Sbjct: 1321 DKGFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKN 1380

Query: 229  LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
            L+ + L  T ISD  L+ L GL  L  L L   +I D+GLA L  L  L  L L    IT
Sbjct: 1381 LKILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPIT 1440

Query: 289  DSGAAYLRNFKNLRSLEICGGGLTDAGV----------KHIKDLSSLTLLNLSQNCNLTD 338
            D G  +L   K L++LE+    +T  G+          K + D  +  +  ++ +  +TD
Sbjct: 1441 DEGLKHLSGLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPI--MTSDSPMTD 1498

Query: 339  KTL----------------------ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
            + +                      EL +      S+++ N+      L+ L  LK L+ 
Sbjct: 1499 REIAEWVIGMGGGIGIGFKLNYKIEELPTEPVIFNSVSLKNASFEDHDLQRLAKLKTLKY 1558

Query: 377  LTLESCKVTANDIKRLQSRDLPNL 400
            L LES  ++   ++ L  R + NL
Sbjct: 1559 LFLESTSISDTGLQYL--RQMQNL 1580


>gi|46447590|ref|YP_008955.1| hypothetical protein pc1956 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401231|emb|CAF24680.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 659

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 139/384 (36%), Positives = 213/384 (55%), Gaps = 12/384 (3%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 69
           + +L+F  N  +T   + A     NL +L L+ C  +   GLV+L  L+ L+ LN+ +C+
Sbjct: 227 IEALNFSENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCD 286

Query: 70  CITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSL 127
            +T++ +  L  LT L+ L + +C  +TD+G+A+L  L  L  LNL  C  +T   L  L
Sbjct: 287 KLTNTGLAHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRL 346

Query: 128 SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLN 185
           S L +L +L+L+ C+ L+D G      + +L+ LNL   E +TD  LVHLK L  L+ L+
Sbjct: 347 SPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLD 406

Query: 186 LDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDG 242
           L  C  + D GL +LT L  L+ L+LS    +  +GL HL  LT L+ ++L     ++D 
Sbjct: 407 LSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVADD 466

Query: 243 SLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKN 300
            L  L  L++L++L+L   R +TD GL  L  LT L +L L     +TD+G  +LR    
Sbjct: 467 GLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTDAGLIHLRPLVA 526

Query: 301 LRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-S 358
           L+ L++   G LTD G+ H+  L +L  L+L+   NLT   L  +  LT L  L+++   
Sbjct: 527 LQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLTTLQHLSLNQCW 586

Query: 359 RITSAGLRHLKPLKNLRSLTLESC 382
            +T AGL HL+PL  L+ L L  C
Sbjct: 587 NLTDAGLVHLEPLTALQHLDLSYC 610



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 137/374 (36%), Positives = 205/374 (54%), Gaps = 12/374 (3%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L+ L  L  L+    + +T  G+     L  L  L+L  C  +   GL +L  L  L+ 
Sbjct: 270 HLAPLVALKHLNLNFCDKLTNTGLAHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQH 329

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           LN+ +C+ +TD+ +  LS LT L+ L +S C  +TD+G+ +LK L  L  LNL  C  +T
Sbjct: 330 LNLNFCDKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLT 389

Query: 121 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 178
            A L  L  L +L +L+L+ C  L+D G    + + +L+ L+L + N +TD  LVHLK L
Sbjct: 390 DAGLVHLKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFL 449

Query: 179 TNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF 236
           T L+ L+L  C  + D+GL +LT L  L+ L LS  + +  +GL HL  LT L+ + LS 
Sbjct: 450 TALQHLDLRGCDKVADDGLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQ 509

Query: 237 -TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 293
              ++D  L  L  L +L+ L+L     +TD GL  LT L  L HLDL +   +T  G A
Sbjct: 510 CWNLTDAGLIHLRPLVALQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLA 569

Query: 294 YLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
           +LR+   L+ L +     LTDAG+ H++ L++L  L+LS   N TD  L  ++ L  L  
Sbjct: 570 HLRSLTTLQHLSLNQCWNLTDAGLVHLEPLTALQHLDLSYCGNFTDVGLVHLTSLMALQH 629

Query: 353 LNVSN-SRITSAGL 365
           LN+    R+T  GL
Sbjct: 630 LNLRGCDRVTDVGL 643



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 132/356 (37%), Positives = 194/356 (54%), Gaps = 33/356 (9%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 107
             L+ LK    L+ L+++ C  +TD+ +  L+ L  LK L ++ C K+T++G+A+L+ L 
Sbjct: 241 AHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCDKLTNTGLAHLRPLT 300

Query: 108 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFN 165
            L  LNL  C  +T A L  L+ L +L +LNLN C +L+D G  + S + +L+ L+L   
Sbjct: 301 ALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRLSPLTALQHLDLSDC 360

Query: 166 E-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 222
           E +TD  LVHLK L  L+ LNL  C  + D GLV+L  L  L+ L+LSD   +  +GL H
Sbjct: 361 ENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLDLSDCNNLTDAGLAH 420

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           L+ LT L+ ++LS+                          +TD GL  L  LT L HLDL
Sbjct: 421 LTPLTALQYLDLSY-----------------------CNNLTDAGLVHLKFLTALQHLDL 457

Query: 283 FGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
            G  ++ D G A+L     L++L +     LTDAG+ H+K L++L  L LSQ  NLTD  
Sbjct: 458 RGCDKVADDGLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTDAG 517

Query: 341 LELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQS 394
           L  +  L  L  L++S    +T  GL HL PL  L+ L L  C+ +T + +  L+S
Sbjct: 518 LIHLRPLVALQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRS 573



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 174/313 (55%), Gaps = 12/313 (3%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESL 63
           LS L+ L  L       +T  G+     L+ L  L+L  C  +   GLV+LK L+ L+ L
Sbjct: 346 LSPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHL 405

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTA 121
           ++  CN +TD+ +  L+ LT L+ L +S C+ +TD+G+ +LK L  L  L+L GC  V  
Sbjct: 406 DLSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVAD 465

Query: 122 ACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGL 178
             L  L+ L +L  L+L++C+ L+D G      + +L+ L L   +N +TD  L+HL+ L
Sbjct: 466 DGLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWN-LTDAGLIHLRPL 524

Query: 179 TNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF 236
             L+ L+L  CG + D GLV+LT L  L+ L+L+  + +   GL HL  LT L+ ++L+ 
Sbjct: 525 VALQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLTTLQHLSLNQ 584

Query: 237 -TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAA 293
              ++D  L  L  L++L+ L+L      TD GL  LTSL  L HL+L G  R+TD G A
Sbjct: 585 CWNLTDAGLVHLEPLTALQHLDLSYCGNFTDVGLVHLTSLMALQHLNLRGCDRVTDVGLA 644

Query: 294 YLRNFKNLRSLEI 306
             + F     L+I
Sbjct: 645 LFKIFATSLHLKI 657



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/252 (38%), Positives = 143/252 (56%), Gaps = 13/252 (5%)

Query: 150 KFSKI-----GSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 202
           +F +I       ++ LN   N  +TD  L+ LK   NL+ L+L  C  + D GLV+L  L
Sbjct: 215 EFQRIINQFSNEIEALNFSENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPL 274

Query: 203 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD- 259
             LK L L+   ++ ++GL HL  LT L+ +NL +   ++D  L  L  L++L+ LNL+ 
Sbjct: 275 VALKHLNLNFCDKLTNTGLAHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNF 334

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVK 317
             ++TDTGL  L+ LT L HLDL     +TD+G  +L+    L+ L + C   LTDAG+ 
Sbjct: 335 CDKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLV 394

Query: 318 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRS 376
           H+K L +L  L+LS   NLTD  L  ++ LT L  L++S  + +T AGL HLK L  L+ 
Sbjct: 395 HLKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQH 454

Query: 377 LTLESCKVTAND 388
           L L  C   A+D
Sbjct: 455 LDLRGCDKVADD 466


>gi|298709085|emb|CBJ31033.1| Hypothetical leucine rich repeat protein [Ectocarpus siliculosus]
          Length = 573

 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 115/286 (40%), Positives = 162/286 (56%), Gaps = 8/286 (2%)

Query: 124 LDSLSALGSLFYLNLNRC---QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLT 179
           L  LSA GS    +L+ C   +L++ G    S +  L+ L+L  N     C+  L + L 
Sbjct: 289 LSRLSA-GSPLLRDLDLCGCVRLTESGAHTLSALQDLETLDLS-NCRVYSCVEELAQKLP 346

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            L +LNLD C +GD G+  L+ L  L+ L L+DT +  +G+ HL+ LT L  +NL F  I
Sbjct: 347 GLTALNLDRCNVGDTGVRALSSLTKLERLNLADTSITDAGMTHLAPLTRLRDLNLFFCHI 406

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY-LRNF 298
           +D  L  LA LS+L  LNLD R + D G+  LT L  L  LD+F A ITD G A+ L   
Sbjct: 407 TDAGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDVFSASITDFGVAHGLCRL 466

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
             L +LE+C G LTD G+ H+  + SLT LN+SQN  +T   +  +  LT L SLN+S+ 
Sbjct: 467 PCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHVGTLTRLRSLNLSSC 526

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
            IT + L  L  L NL SL++  C++   D++ L+ + LPNL   R
Sbjct: 527 NITPSSLNSLTGLVNLESLSVFGCRLEMTDLELLREK-LPNLRVVR 571



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 146/288 (50%), Gaps = 30/288 (10%)

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEK 150
           C ++T+SG   L  LQ L  L+L  C V + C++ L+  L  L  LNL+RC + D G   
Sbjct: 307 CVRLTESGAHTLSALQDLETLDLSNCRVYS-CVEELAQKLPGLTALNLDRCNVGDTGVRA 365

Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
            S +  L+ LNL    ITD  + HL  LT L  LNL  C I D                 
Sbjct: 366 LSSLTKLERLNLADTSITDAGMTHLAPLTRLRDLNLFFCHITD----------------- 408

Query: 211 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA- 269
                  +GL  L+ L+NL  +NL    + D  + +L  L  L+SL++ +  ITD G+A 
Sbjct: 409 -------AGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDVFSASITDFGVAH 461

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLL 328
            L  L  LT L++   R+TD G  +L   K+L  L +    G+T AGV+H+  L+ L  L
Sbjct: 462 GLCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHVGTLTRLRSL 521

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP-LKNLR 375
           NLS +CN+T  +L  ++GL  L SL+V   R+    L  L+  L NLR
Sbjct: 522 NLS-SCNITPSSLNSLTGLVNLESLSVFGCRLEMTDLELLREKLPNLR 568



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 144/296 (48%), Gaps = 35/296 (11%)

Query: 41  LERCTRIHGGLVNLKGLMKLES-----LNIKWCNCI--TDSDMKPLSGLTNLKSLQISCS 93
           LER      G+ N +GL +L +      ++  C C+  T+S    LS L +L++L +S  
Sbjct: 274 LERVCLARSGIGN-EGLSRLSAGSPLLRDLDLCGCVRLTESGAHTLSALQDLETLDLSNC 332

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
           +V        + L  LT LNL+ C V    + +LS+L  L  LNL    ++D G    + 
Sbjct: 333 RVYSCVEELAQKLPGLTALNLDRCNVGDTGVRALSSLTKLERLNLADTSITDAGMTHLAP 392

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT------------- 200
           +  L+ LNL F  ITD  L  L  L+NL  LNLD+  +GD G+V LT             
Sbjct: 393 LTRLRDLNLFFCHITDAGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDVFSA 452

Query: 201 ---------GLCNLKC---LELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKL 247
                    GLC L C   LE+   ++   GL HLS + +L  +N+S   GI+   +R +
Sbjct: 453 SITDFGVAHGLCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHV 512

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN-FKNLR 302
             L+ L+SLNL +  IT + L +LT L  L  L +FG R+  +    LR    NLR
Sbjct: 513 GTLTRLRSLNLSSCNITPSSLNSLTGLVNLESLSVFGCRLEMTDLELLREKLPNLR 568



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 4/205 (1%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           L  LT+L+  R N +   G++A + L  L +L+L   +    G+ +L  L +L  LN+ +
Sbjct: 345 LPGLTALNLDRCN-VGDTGVRALSSLTKLERLNLADTSITDAGMTHLAPLTRLRDLNLFF 403

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDS 126
           C+ ITD+ + PL+ L+NL  L +    V D+G+  L  L+ L  L++    +T       
Sbjct: 404 CH-ITDAGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDVFSASITDFGVAHG 462

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLN 185
           L  L  L  L +   +L+D G    S++ SL  LN+  N  IT   + H+  LT L SLN
Sbjct: 463 LCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHVGTLTRLRSLN 522

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLEL 210
           L SC I    L +LTGL NL+ L +
Sbjct: 523 LSSCNITPSSLNSLTGLVNLESLSV 547



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 177/440 (40%), Gaps = 100/440 (22%)

Query: 15  SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITD 73
           S  ++ A+++  ++AF     +  L L  C  +  G V        E L    C  CI  
Sbjct: 33  SLTQHRALSSYALRAFRD-CEVTSLALGECRGVRNGWVR-------ELLQATPCGRCIVT 84

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
            D+              SC+ +TD+G++ L  L+ L   +L  C          S LG+ 
Sbjct: 85  LDLS-------------SCTGLTDTGLSDLPALKSLESASLRRC----------SGLGTE 121

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV-HLKGLTNLESLNLDSC-GI 191
             L L             S    L+ L+L    + D+  V +L GL+ L SL L+ C  I
Sbjct: 122 ATLCL-------------SNSPGLETLSLAHCPLLDDAAVGNLAGLSRLRSLELEGCENI 168

Query: 192 GDEGLVNLTGLCNLKCLELSD----TQVGSSGLRHLSGLTNLESINLSFTG--------- 238
            DEGL     L +L CL  S     T  G +GL   +G   L+ +NL +           
Sbjct: 169 SDEGLRLACRLPSLTCLNASRCHGLTVDGLAGLEQAAG--GLKRLNLGWCAGLVRGSAAA 226

Query: 239 ---------------------------------ISDGSLRKLAGLSSLKSLNLDARQITD 265
                                                    L  L  L+ + L    I +
Sbjct: 227 GGRGGEESDDEDDEDDEDGGGDSDDEGLGGGRRRRRRGRWVLPVLPKLERVCLARSGIGN 286

Query: 266 TGLAALTSLTGLTH-LDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
            GL+ L++ + L   LDL G  R+T+SGA  L   ++L +L++    +     +  + L 
Sbjct: 287 EGLSRLSAGSPLLRDLDLCGCVRLTESGAHTLSALQDLETLDLSNCRVYSCVEELAQKLP 346

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
            LT LNL + CN+ D  +  +S LT L  LN++++ IT AG+ HL PL  LR L L  C 
Sbjct: 347 GLTALNLDR-CNVGDTGVRALSSLTKLERLNLADTSITDAGMTHLAPLTRLRDLNLFFCH 405

Query: 384 VTANDIKRLQSRDLPNLVSF 403
           +T   +  L +  L NLV  
Sbjct: 406 ITDAGLGPLAA--LSNLVRL 423


>gi|46447096|ref|YP_008461.1| hypothetical protein pc1462 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400737|emb|CAF24186.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 870

 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 151/408 (37%), Positives = 220/408 (53%), Gaps = 28/408 (6%)

Query: 3   ENLSG--LSNLTSLSFRRN------NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN 53
           ENL+G  L++LT L   R+        +T  G+     L  L  LDL  C  +   GLV+
Sbjct: 445 ENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSECKNLTDDGLVH 504

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-----SCSKVTDSGIAYLKGLQK 108
           L  L+ L+ L++K C  +TD+ +  L+ LT L+ L +      C  +TD G+A+L  L  
Sbjct: 505 LSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQNLTDDGLAHLSSLTA 564

Query: 109 LTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE 166
           L  L+L     +T A L  L++L +L +L+L+ C+ L+D+G    + + +L+ L+L  ++
Sbjct: 565 LKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSD 624

Query: 167 ITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 223
           ITDE L HL  L+ L  L+L+ C       GL +LT L NL+ L+LS    + S  L  L
Sbjct: 625 ITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAHLTTLVNLEHLDLSGCYSLSSFKLIFL 684

Query: 224 SGLTNLESINLS--FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL--T 278
           S L NL+ +NLS  F    DG L  L  L +L+ L+L +   +TD GLA LTSL GL   
Sbjct: 685 SSLVNLQHLNLSGCFGLYHDG-LEDLTPLMNLQYLDLSSCINLTDKGLAYLTSLVGLGLQ 743

Query: 279 HLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           HLDL G + ITD+G A+L +   L  L++     LTD G+ ++   + L  LNL     +
Sbjct: 744 HLDLSGCKEITDTGLAHLTSLVGLEYLDLSWCENLTDKGLAYLTSFAGLKYLNLKGCKKI 803

Query: 337 TDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
           TD  L  ++ L  L  LN+S    +T  GL HL  L NL+ L L  CK
Sbjct: 804 TDAGLAHLTSLVTLQRLNLSECVNLTDTGLAHLVSLVNLQDLELRECK 851



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 148/422 (35%), Positives = 212/422 (50%), Gaps = 43/422 (10%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLES 62
           +LS L+ L  L     + +T  G+     L++L  LDL +C  + G GL +L  L+ L  
Sbjct: 404 HLSSLTALQYLDLSGCDDLTDAGLAHLTPLVSLQHLDLSKCENLTGDGLAHLTPLVALRH 463

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           L +  C  +TD+ +  L+ LT LK L +S C  +TD G+ +L  L  L  L+L+ C  +T
Sbjct: 464 LGLSDCRNLTDAGLAHLTPLTALKHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLT 523

Query: 121 AACLDSLSALGSLFYLNLN----RCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 174
            A L  L++L +L +L+L      CQ L+DDG    S + +LK L+L + E +TD  L H
Sbjct: 524 DAGLAHLTSLTALEHLDLGLDFGYCQNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAH 583

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT------ 227
           L  LT L+ L+L  C  + DEGL  LT L  L+ L L  + +   GL HL+ L+      
Sbjct: 584 LTSLTALKHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLS 643

Query: 228 --------------------NLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITD 265
                               NLE ++LS    +S   L  L+ L +L+ LNL     +  
Sbjct: 644 LNDCRRIYHGYGLAHLTTLVNLEHLDLSGCYSLSSFKLIFLSSLVNLQHLNLSGCFGLYH 703

Query: 266 TGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNL--RSLEICG-GGLTDAGVKHIKD 321
            GL  LT L  L +LDL     +TD G AYL +   L  + L++ G   +TD G+ H+  
Sbjct: 704 DGLEDLTPLMNLQYLDLSSCINLTDKGLAYLTSLVGLGLQHLDLSGCKEITDTGLAHLTS 763

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 380
           L  L  L+LS   NLTDK L  ++   GL  LN+    +IT AGL HL  L  L+ L L 
Sbjct: 764 LVGLEYLDLSWCENLTDKGLAYLTSFAGLKYLNLKGCKKITDAGLAHLTSLVTLQRLNLS 823

Query: 381 SC 382
            C
Sbjct: 824 EC 825



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 180/339 (53%), Gaps = 41/339 (12%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV----TDSGIAYLKGLQKLTLLNLE 115
           +E LN+   +  T++       L N K+L++ C K+     D+G+A+L  L  L  L+L 
Sbjct: 336 IEELNLSGKDFFTEAHFL---ALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQNLDLS 392

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 174
            C                 YL      L D G    S + +L+ L+L G +++TD  L H
Sbjct: 393 EC-----------------YL------LKDTGLAHLSSLTALQYLDLSGCDDLTDAGLAH 429

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESI 232
           L  L +L+ L+L  C  +  +GL +LT L  L+ L LSD + +  +GL HL+ LT L+ +
Sbjct: 430 LTPLVSLQHLDLSKCENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHL 489

Query: 233 NLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL---FG--A 285
           +LS    ++D  L  L+ L +L+ L+L     +TD GLA LTSLT L HLDL   FG   
Sbjct: 490 DLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQ 549

Query: 286 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
            +TD G A+L +   L+ L++     LTDAG+ H+  L++L  L+LS   NLTD+ L  +
Sbjct: 550 NLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYL 609

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           + L  L  L++  S IT  GL HL  L  LR L+L  C+
Sbjct: 610 TPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCR 648



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 177/342 (51%), Gaps = 27/342 (7%)

Query: 3   ENL--SGLSNLTSLS----------FRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHG 49
           ENL  +GL++LTSL+          F     +T  G+   + L  L  LDL  R      
Sbjct: 520 ENLTDAGLAHLTSLTALEHLDLGLDFGYCQNLTDDGLAHLSSLTALKHLDLSWRENLTDA 579

Query: 50  GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 109
           GL +L  L  L+ L++ WC  +TD  +  L+ L  L+ L +  S +TD G+ +L  L  L
Sbjct: 580 GLAHLTSLTALKHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSAL 639

Query: 110 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFN 165
             L+L  C        L  L+ L +L +L+L+ C  LS       S + +L+ LNL G  
Sbjct: 640 RHLSLNDCRRIYHGYGLAHLTTLVNLEHLDLSGCYSLSSFKLIFLSSLVNLQHLNLSGCF 699

Query: 166 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC--NLKCLELSD-TQVGSSGLR 221
            +  + L  L  L NL+ L+L SC  + D+GL  LT L    L+ L+LS   ++  +GL 
Sbjct: 700 GLYHDGLEDLTPLMNLQYLDLSSCINLTDKGLAYLTSLVGLGLQHLDLSGCKEITDTGLA 759

Query: 222 HLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTH 279
           HL+ L  LE ++LS+   ++D  L  L   + LK LNL   ++ITD GLA LTSL  L  
Sbjct: 760 HLTSLVGLEYLDLSWCENLTDKGLAYLTSFAGLKYLNLKGCKKITDAGLAHLTSLVTLQR 819

Query: 280 LDLFG-ARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKH 318
           L+L     +TD+G A+L +  NL+ LE+  C   +TD G+ H
Sbjct: 820 LNLSECVNLTDTGLAHLVSLVNLQDLELREC-KSITDTGLAH 860



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 94/174 (54%), Gaps = 7/174 (4%)

Query: 220 LRHLSGLTNLESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQIT-DTGLAALTSLTGL 277
           L H S  T++E +NLS     ++     L    +LK L L       DTGLA LTSLT L
Sbjct: 329 LNHFS--TDIEELNLSGKDFFTEAHFLALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTAL 386

Query: 278 THLDLFGARI-TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            +LDL    +  D+G A+L +   L+ L++ G   LTDAG+ H+  L SL  L+LS+  N
Sbjct: 387 QNLDLSECYLLKDTGLAHLSSLTALQYLDLSGCDDLTDAGLAHLTPLVSLQHLDLSKCEN 446

Query: 336 LTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           LT   L  ++ L  L  L +S+ R +T AGL HL PL  L+ L L  CK   +D
Sbjct: 447 LTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSECKNLTDD 500


>gi|283780172|ref|YP_003370927.1| hypothetical protein Psta_2397 [Pirellula staleyi DSM 6068]
 gi|283438625|gb|ADB17067.1| leucine-rich repeat cysteine-containing subtype [Pirellula staleyi
           DSM 6068]
          Length = 443

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 177/320 (55%), Gaps = 26/320 (8%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E+L+ L  L  +  +R + +T++G ++ A +  L ++   +       L  +K + +LE 
Sbjct: 137 EHLTKLPALEDIQLKRCD-LTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQLEL 195

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L+++ CN +T++ + PL+G+T LKSL+I    +TD+ + Y+K  + L  L+LE    +A 
Sbjct: 196 LDLQDCNQVTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQ---SAV 252

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            +D +  +G L                  SK+  LK+   G + +TD+ L  + GL +LE
Sbjct: 253 GVDGMKVIGGL------------------SKLKELKLY--GASNVTDDALAQIAGLKDLE 292

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISD 241
            L L S     +G+V+L G+  LK L+LS+T  + ++GL  L+ LTNLE INL +T + D
Sbjct: 293 ILELRSTTTTSKGMVHLAGMSKLKLLDLSETANIDNAGLAALAPLTNLEEINLWYTFVDD 352

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             L  LAG++ LK LNLD  Q+TD GL  L  L+ L  L +   R+TD+G A L   KNL
Sbjct: 353 AGLAPLAGMTKLKRLNLDKCQVTDAGLVHLKGLSNLEFLHIGSTRVTDTGLAELEGLKNL 412

Query: 302 RSLEICG-GGLTDAGVKHIK 320
           + L I     ++D GV  ++
Sbjct: 413 KHLVITFCNDISDDGVAKLQ 432



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 182/361 (50%), Gaps = 30/361 (8%)

Query: 72  TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
           +D ++K L GL +L  L+ +   VTD+G+A L G   L +L LE   VT A ++ L+ L 
Sbjct: 84  SDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSSVTDAGMEHLTKLP 143

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG- 190
           +L  + L RC L+  G E  +KI +L+ +        D+CL  +K ++ LE L+L  C  
Sbjct: 144 ALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQLELLDLQDCNQ 203

Query: 191 IGDEGLVNLTGLCNLKCLE------------------------LSDTQVGSSGLRHLSGL 226
           + + GL  L G+  LK L                         L  + VG  G++ + GL
Sbjct: 204 VTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVGVDGMKVIGGL 263

Query: 227 TNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG- 284
           + L+ + L   + ++D +L ++AGL  L+ L L +   T  G+  L  ++ L  LDL   
Sbjct: 264 SKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLSET 323

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
           A I ++G A L    NL  + +    + DAG+  +  ++ L  LNL + C +TD  L  +
Sbjct: 324 ANIDNAGLAALAPLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDK-CQVTDAGLVHL 382

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND-IKRLQSRDLPNLVSF 403
            GL+ L  L++ ++R+T  GL  L+ LKNL+ L +  C   ++D + +LQ+  LP L   
Sbjct: 383 KGLSNLEFLHIGSTRVTDTGLAELEGLKNLKHLVITFCNDISDDGVAKLQAA-LPGLTKI 441

Query: 404 R 404
            
Sbjct: 442 E 442



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 122/250 (48%), Gaps = 26/250 (10%)

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
           G++  + LG  E +DE L HLKGL +L  L  +  G+ D GL NL G   L+ L L  + 
Sbjct: 72  GNITEVKLGV-EGSDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSS 130

Query: 215 VGSSGLRHLSGLTNLESINL------------------------SFTGISDGSLRKLAGL 250
           V  +G+ HL+ L  LE I L                          T  +D  L  +  +
Sbjct: 131 VTDAGMEHLTKLPALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDM 190

Query: 251 SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           S L+ L+L D  Q+T+ GLA L  +T L  L ++G  ITD+   Y+++ KNL SL +   
Sbjct: 191 SQLELLDLQDCNQVTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQS 250

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
            +   G+K I  LS L  L L    N+TD  L  I+GL  L  L + ++  TS G+ HL 
Sbjct: 251 AVGVDGMKVIGGLSKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLA 310

Query: 370 PLKNLRSLTL 379
            +  L+ L L
Sbjct: 311 GMSKLKLLDL 320



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 5/183 (2%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           + GLS L  L     + +T   +   AGL +L  L+L   T    G+V+L G+ KL+ L+
Sbjct: 260 IGGLSKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLD 319

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +     I ++ +  L+ LTNL+ + +  + V D+G+A L G+ KL  LNL+ C VT A L
Sbjct: 320 LSETANIDNAGLAALAPLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDKCQVTDAGL 379

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK----GLT 179
             L  L +L +L++   +++D G  +   + +LK L + F N+I+D+ +  L+    GLT
Sbjct: 380 VHLKGLSNLEFLHIGSTRVTDTGLAELEGLKNLKHLVITFCNDISDDGVAKLQAALPGLT 439

Query: 180 NLE 182
            +E
Sbjct: 440 KIE 442



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 6/186 (3%)

Query: 210 LSDTQVGSSG----LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
           +++ ++G  G    L+HL GL +L  +  +  G++D  L  L G  +L+ L L+   +TD
Sbjct: 74  ITEVKLGVEGSDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSSVTD 133

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
            G+  LT L  L  + L    +T  G   L   K LR +        D  +  IKD+S L
Sbjct: 134 AGMEHLTKLPALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQL 193

Query: 326 TLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
            LL+L Q+CN +T+  L  ++G+T L SL +    IT   + ++K  KNL SL+LE   V
Sbjct: 194 ELLDL-QDCNQVTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAV 252

Query: 385 TANDIK 390
             + +K
Sbjct: 253 GVDGMK 258


>gi|46447300|ref|YP_008665.1| hypothetical protein pc1666 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400941|emb|CAF24390.1| hypothetical protein pc1666 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 518

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 131/343 (38%), Positives = 190/343 (55%), Gaps = 13/343 (3%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           +K F+  I  +    E    I   L+ LK    L+ L ++ C+ +TD+ +  L+ L  L+
Sbjct: 179 LKFFSNEIEALNFS-ENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQ 237

Query: 87  SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 143
            L +S CSK+TD+G+A+L  L  L  L+L  C  +T A L  L+ L +L +LNL+ C +L
Sbjct: 238 HLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKL 297

Query: 144 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 201
           +D G    + + +L+ L+L +   +TD  L HL  L  L+ LNL  C  + D GL +LT 
Sbjct: 298 TDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTS 357

Query: 202 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD 259
           L  L+ L+L+    +   GL HL+ L  L+ + LS    ++D  L  L  L +L+ LNL 
Sbjct: 358 LVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLS 417

Query: 260 A-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGV 316
             ++ITD GLA LT L  L HLDL G  ++TD G A+L     L+ L++ C   LTDAG+
Sbjct: 418 ICKKITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGL 477

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
            H+K L +L  LNLS   NLTD  L     LT   SLN+  SR
Sbjct: 478 VHLKPLMALQHLNLSYCTNLTDAGLAHFKNLT--TSLNLKLSR 518



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 176/334 (52%), Gaps = 34/334 (10%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 117
           ++E+LN      + D+ +  L    NLK L +  C  +TD+G+++L  L  L  LNL  C
Sbjct: 185 EIEALNFSENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQHLNLSYC 244

Query: 118 -PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 174
             +T A L  L++L +L +L+L++C  L+D G    + + +L+ LNL + +++TD  L H
Sbjct: 245 SKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAH 304

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 232
           L  L  L+ L+L  C  + D GL +LT L  L+ L LS   ++   GL HL+ L  L+ +
Sbjct: 305 LTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTSLVALQHL 364

Query: 233 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITD 289
           +L++   +++  L  L  L +L+ L L     +TD GLA LTSL  L HL+L    +ITD
Sbjct: 365 DLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLSICKKITD 424

Query: 290 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
            G A+L     L+ L++ G   LTD G+ H+  L +L  L+L+   NLTD          
Sbjct: 425 VGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTD---------- 474

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
                         AGL HLKPL  L+ L L  C
Sbjct: 475 --------------AGLVHLKPLMALQHLNLSYC 494



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/281 (33%), Positives = 150/281 (53%), Gaps = 9/281 (3%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L+ L  L  L+    + +T  G+     L+ L  LDL +C  +   GL +L  L  L+ 
Sbjct: 229 HLAPLVTLQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQH 288

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 120
           LN+ +C+ +TD+ +  L+ L  L+ L ++ C  +TD G+A+L  L  L  LNL  C  +T
Sbjct: 289 LNLSYCSKLTDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLT 348

Query: 121 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGL 178
              L  L++L +L +L+L  C  L++ G    + + +L+ L L   + +TD  L HL  L
Sbjct: 349 DVGLAHLTSLVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSL 408

Query: 179 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS- 235
             L+ LNL  C  I D GL +LT L  L+ L+LS   ++   GL HL+ L  L+ ++L+ 
Sbjct: 409 VALQHLNLSICKKITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTC 468

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 275
              ++D  L  L  L +L+ LNL     +TD GLA   +LT
Sbjct: 469 CVNLTDAGLVHLKPLMALQHLNLSYCTNLTDAGLAHFKNLT 509



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 90/245 (36%), Positives = 131/245 (53%), Gaps = 10/245 (4%)

Query: 149 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 204
           +K  K  S ++  L F+E   + D  L+ LK   NL+ L L  C  + D GL +L  L  
Sbjct: 176 KKILKFFSNEIEALNFSENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVT 235

Query: 205 LKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-R 261
           L+ L LS  +++  +GL HL+ L  L+ ++LS    ++D  L  L  L++L+ LNL    
Sbjct: 236 LQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCS 295

Query: 262 QITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHI 319
           ++TD GLA LTSL  L HLDL +   +TD G A+L     L+ L +     LTD G+ H+
Sbjct: 296 KLTDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHL 355

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLT 378
             L +L  L+L+   NLT+  L  ++ L  L  L +S    +T AGL HL  L  L+ L 
Sbjct: 356 TSLVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLN 415

Query: 379 LESCK 383
           L  CK
Sbjct: 416 LSICK 420


>gi|46447142|ref|YP_008507.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400783|emb|CAF24232.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 657

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 137/383 (35%), Positives = 199/383 (51%), Gaps = 54/383 (14%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKW 67
           +++  L+F RN  +T   +       NL  L LE C  +   GL +L  L+ L+ L++  
Sbjct: 309 NDIEELNFSRNAYLTDAHLLVLKNCKNLKALYLEGCKNLTDTGLAHLSPLVALQHLSLFD 368

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLD 125
           C  +TD+ +  LS L NL+ L +S SK  T++G+A+L  L  L  LNL GC  +T   L 
Sbjct: 369 CENLTDAGLAYLSPLENLQHLNLSHSKHFTNAGLAHLSPLAALQHLNLFGCENLTGDGLT 428

Query: 126 SLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLES 183
            LS+L +L +L LN C+ L+D G    + + +L+ L+L F + +TD  L HL  L  L+ 
Sbjct: 429 HLSSLVALQHLGLNFCRNLTDAGLAHLAPLVTLQHLDLNFCDNLTDTGLAHLTSLVTLQH 488

Query: 184 LNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISD 241
           LNL  C  + D GLV+L+ L NL+ L+L+D   +  +GL HL+ L  L+ +N        
Sbjct: 489 LNLGWCRNLTDAGLVHLSPLENLQHLDLNDCYNLTDAGLAHLTPLVALQHLN-------- 540

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             LR+              R++TD GLA LT L  L +LDLFG R               
Sbjct: 541 --LRR-------------CRKLTDAGLAHLTPLVALQYLDLFGCR--------------- 570

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRI 360
                    LTDAG+ H+  L +L  L L    NLTD+ L  ++ L  L  L++S  S +
Sbjct: 571 --------NLTDAGLTHLTPLIALQHLYLGLCNNLTDRGLAHLTPLAVLQRLDLSFCSNL 622

Query: 361 TSAGLRHLKPLKNLRSLTLESCK 383
           T+AGLRHL PL  L+ L L  C+
Sbjct: 623 TNAGLRHLSPLVALKYLDLSGCE 645



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 127/225 (56%), Gaps = 18/225 (8%)

Query: 3   ENLSG--LSNLTSL--------SFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGL 51
           ENL+G  L++L+SL        +F RN  +T  G+   A L+ L  LDL  C  +   GL
Sbjct: 420 ENLTGDGLTHLSSLVALQHLGLNFCRN--LTDAGLAHLAPLVTLQHLDLNFCDNLTDTGL 477

Query: 52  VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLT 110
            +L  L+ L+ LN+ WC  +TD+ +  LS L NL+ L ++ C  +TD+G+A+L  L  L 
Sbjct: 478 AHLTSLVTLQHLNLGWCRNLTDAGLVHLSPLENLQHLDLNDCYNLTDAGLAHLTPLVALQ 537

Query: 111 LLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEI 167
            LNL  C  +T A L  L+ L +L YL+L  C+ L+D G    + + +L+ L LG  N +
Sbjct: 538 HLNLRRCRKLTDAGLAHLTPLVALQYLDLFGCRNLTDAGLTHLTPLIALQHLYLGLCNNL 597

Query: 168 TDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELS 211
           TD  L HL  L  L+ L+L  C  + + GL +L+ L  LK L+LS
Sbjct: 598 TDRGLAHLTPLAVLQRLDLSFCSNLTNAGLRHLSPLVALKYLDLS 642


>gi|224007994|ref|XP_002292956.1| hypothetical protein THAPSDRAFT_16210 [Thalassiosira pseudonana
           CCMP1335]
 gi|220971082|gb|EED89417.1| hypothetical protein THAPSDRAFT_16210 [Thalassiosira pseudonana
           CCMP1335]
          Length = 301

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/234 (37%), Positives = 138/234 (58%), Gaps = 4/234 (1%)

Query: 153 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLE 209
           KI +LK L L ++ + D  L H + L  LE LNLDSC +GD  + +L     + N+  L+
Sbjct: 69  KINNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNVIPNITSLD 128

Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 269
           L+D  +   GL  ++    ++ ++L +  ++   LR L+ ++ L+ LNLD+R+I D GL 
Sbjct: 129 LADADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLK 188

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
            L  L  L  LD+F  R+TD G   +R  K L+SLE+CGGG+ D G  H+  + +LT LN
Sbjct: 189 HLRDLP-LQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLTSLN 247

Query: 330 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           LSQN  +T++    ++ L+ L +LN+SN+ +T   LR+   L  L+SL L  C+
Sbjct: 248 LSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLALYGCR 301



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 118/212 (55%), Gaps = 6/212 (2%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCSKVTDSGIAYLKGLQ 107
           L + + L  LE LN+  C+ + D  +  L+    + N+ SL ++ + ++D G++ +   +
Sbjct: 88  LAHFRSLPMLEELNLDSCH-LGDWSIAHLADNNVIPNITSLDLADADISDFGLSKIAQFK 146

Query: 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
           ++  L+L  C VT+A L  LS++  L  LNL+  ++ D+G +    +  L+ L++    +
Sbjct: 147 QMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLKHLRDL-PLQSLDVFSGRV 205

Query: 168 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGL 226
           TD     ++ +  L+SL L   G+GD G  +L  + NL  L LS  + + + G   L+ L
Sbjct: 206 TDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLTSLNLSQNERITNRGAASLAAL 265

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           +NL+++NLS T ++  +LR  + LS LKSL L
Sbjct: 266 SNLKALNLSNTAVTPDALRYFSDLSKLKSLAL 297



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD---LSSLTLLNL 330
           +  L  L+L  + + D+  A+ R+   L  L +    L D  + H+ D   + ++T L+L
Sbjct: 70  INNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNVIPNITSLDL 129

Query: 331 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
           + + +++D  L  I+    +  L++    +TSAGLRHL  +  L  L L+S ++    +K
Sbjct: 130 A-DADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLK 188

Query: 391 RLQSRDLP 398
            L  RDLP
Sbjct: 189 HL--RDLP 194



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL--DLERCTRIHG--GLVNLKGLMKLES 62
           GL +L  L  +  +  + +      G I L+K    LE C    G  G  +L  +  L S
Sbjct: 186 GLKHLRDLPLQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLTS 245

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           LN+     IT+     L+ L+NLK+L +S + VT   + Y   L KL  L L GC
Sbjct: 246 LNLSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLALYGC 300


>gi|406835014|ref|ZP_11094608.1| hypothetical protein SpalD1_25335 [Schlesneria paludicola DSM
           18645]
          Length = 497

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 192/370 (51%), Gaps = 4/370 (1%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +LSGL NLTSL F  N  I+ +G+     L NL  L L        GL NL+ + KL +L
Sbjct: 122 DLSGLKNLTSLHFE-NTEISNEGIHELQELKNLTTLSLHTTHVTDAGLRNLREVSKLTTL 180

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           ++   N I+D   K L  L +L SL +    + D  +  +  L+ L  L+L    +T + 
Sbjct: 181 SLS-GNSISDDGFKELGELKHLSSLSLRLENIDDVQLDEISKLENLKTLSLHVPSITDSE 239

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L  L  + +L  L L   +++D G +    + +L  L+L   +ITD  L  +  L NL S
Sbjct: 240 LKQLRTVKNLTKLFLINSKITDAGLKPLLDLKNLTDLDLSSTQITDAGLKEIGQLENLTS 299

Query: 184 LNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           L L+ C GI D G   L  + NLK L L+   +   G++ L  L +LE ++LS T I+D 
Sbjct: 300 LYLEGCGGITDVGFRELRNIKNLKRLALARCGITDLGMKGLGQLKSLELLDLSRTPITDH 359

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            ++++ GL++L +L L    ITD GL  +  L  L  L L  A ITD+G   L  F N+ 
Sbjct: 360 GIQEIGGLTNLSTLWLLGSNITDLGLREINGLENLKELYLKSAFITDAGMKELGKFHNMN 419

Query: 303 SLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
            L +    G+TDAG+K ++DL  L++  L    N+TD  ++ +     L  LNV  +++T
Sbjct: 420 MLHLIQCDGITDAGLKELRDLKKLSMFELYGCRNVTDAGIDELKEHKQLTILNVGATQVT 479

Query: 362 SAGLRHLKPL 371
            +G+  LK L
Sbjct: 480 VSGVNKLKEL 489



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 114/318 (35%), Positives = 168/318 (52%), Gaps = 2/318 (0%)

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           + P S LT L       S++T + ++ L GL+ LT L+ E   ++   +  L  L +L  
Sbjct: 96  LMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNLTSLHFENTEISNEGIHELQELKNLTT 155

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L+L+   ++D G     ++  L  L+L  N I+D+    L  L +L SL+L    I D  
Sbjct: 156 LSLHTTHVTDAGLRNLREVSKLTTLSLSGNSISDDGFKELGELKHLSSLSLRLENIDDVQ 215

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           L  ++ L NLK L L    +  S L+ L  + NL  + L  + I+D  L+ L  L +L  
Sbjct: 216 LDEISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLINSKITDAGLKPLLDLKNLTD 275

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
           L+L + QITD GL  +  L  LT L L G   ITD G   LRN KNL+ L +   G+TD 
Sbjct: 276 LDLSSTQITDAGLKEIGQLENLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGITDL 335

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
           G+K +  L SL LL+LS+   +TD  ++ I GLT L +L +  S IT  GLR +  L+NL
Sbjct: 336 GMKGLGQLKSLELLDLSRTP-ITDHGIQEIGGLTNLSTLWLLGSNITDLGLREINGLENL 394

Query: 375 RSLTLESCKVTANDIKRL 392
           + L L+S  +T   +K L
Sbjct: 395 KELYLKSAFITDAGMKEL 412



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 122/372 (32%), Positives = 183/372 (49%), Gaps = 5/372 (1%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           +  F+ L  LV  + +        L +L GL  L SL+ +    I++  +  L  L NL 
Sbjct: 96  LMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNLTSLHFENTE-ISNEGIHELQELKNLT 154

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           +L +  + VTD+G+  L+ + KLT L+L G  ++      L  L  L  L+L    + D 
Sbjct: 155 TLSLHTTHVTDAGLRNLREVSKLTTLSLSGNSISDDGFKELGELKHLSSLSLRLENIDDV 214

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
             ++ SK+ +LK L+L    ITD  L  L+ + NL  L L +  I D GL  L  L NL 
Sbjct: 215 QLDEISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLINSKITDAGLKPLLDLKNLT 274

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITD 265
            L+LS TQ+  +GL+ +  L NL S+ L    GI+D   R+L  + +LK L L    ITD
Sbjct: 275 DLDLSSTQITDAGLKEIGQLENLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGITD 334

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
            G+  L  L  L  LDL    ITD G   +    NL +L + G  +TD G++ I  L +L
Sbjct: 335 LGMKGLGQLKSLELLDLSRTPITDHGIQEIGGLTNLSTLWLLGSNITDLGLREINGLENL 394

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLN-VSNSRITSAGLRHLKPLKNLRSLTLESCK- 383
             L L ++  +TD  ++ +     +  L+ +    IT AGL+ L+ LK L    L  C+ 
Sbjct: 395 KELYL-KSAFITDAGMKELGKFHNMNMLHLIQCDGITDAGLKELRDLKKLSMFELYGCRN 453

Query: 384 VTANDIKRLQSR 395
           VT   I  L+  
Sbjct: 454 VTDAGIDELKEH 465



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
           FNE     L+    LT L   N  S  I    L +L+GL NL  L   +T++ + G+  L
Sbjct: 88  FNEKHLNLLMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNLTSLHFENTEISNEGIHEL 147

Query: 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
             L NL +++L  T ++D  LR L  +S L +L+L    I+D G   L  L  L+ L L 
Sbjct: 148 QELKNLTTLSLHTTHVTDAGLRNLREVSKLTTLSLSGNSISDDGFKELGELKHLSSLSLR 207

Query: 284 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
              I D     +   +NL++L +    +TD+ +K ++ + +LT L L  N  +TD  L+ 
Sbjct: 208 LENIDDVQLDEISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLI-NSKITDAGLKP 266

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
           +  L  L  L++S+++IT AGL+ +  L+NL SL LE C
Sbjct: 267 LLDLKNLTDLDLSSTQITDAGLKEIGQLENLTSLYLEGC 305



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 124/296 (41%), Gaps = 51/296 (17%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L  + NLT L F  N+ IT  G+K    L NL  LDL                     
Sbjct: 241 KQLRTVKNLTKL-FLINSKITDAGLKPLLDLKNLTDLDLSSTQ----------------- 282

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
                   ITD+ +K +  L NL SL +  C  +TD G   L+ ++ L  L L  C +T 
Sbjct: 283 --------ITDAGLKEIGQLENLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGITD 334

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             +  L  L SL  L+L+R  ++D G ++   + +L  L L  + ITD  L  + GL NL
Sbjct: 335 LGMKGLGQLKSLELLDLSRTPITDHGIQEIGGLTNLSTLWLLGSNITDLGLREINGLENL 394

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           + L L S  I D G+  L    N+  L L                       +   GI+D
Sbjct: 395 KELYLKSAFITDAGMKELGKFHNMNMLHL-----------------------IQCDGITD 431

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             L++L  L  L    L   R +TD G+  L     LT L++   ++T SG   L+
Sbjct: 432 AGLKELRDLKKLSMFELYGCRNVTDAGIDELKEHKQLTILNVGATQVTVSGVNKLK 487


>gi|168698219|ref|ZP_02730496.1| hypothetical protein GobsU_01767 [Gemmata obscuriglobus UQM 2246]
          Length = 380

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 167/299 (55%), Gaps = 1/299 (0%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           +TD ++K L  L +L S+ +S + VT++G+  L   + LT L+L    +T A L  L+ L
Sbjct: 60  VTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKELAPL 119

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            +L   NL+  +++D G ++ + I +L  L+L   EITD  L  L  + +L +L+L    
Sbjct: 120 KNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDLSDTK 179

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           + D GL  L  L  L  L L +T+V  +GL+ L+   NL  + L  T ++D  L++LA L
Sbjct: 180 VTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAPL 239

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
            SL  L L   ++TD GL  L  L  LT L+L+G ++TD+G   L  F+NL  L++ G  
Sbjct: 240 KSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLSGTN 299

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
           +TDAG+K +    +L  L LS    +TD  L+ ++ L  L  L + +++ T AG++  +
Sbjct: 300 VTDAGIKELARFKNLAHLELSSTA-VTDVGLKELASLKKLTKLFLISTKTTFAGIKEFQ 357



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/300 (36%), Positives = 163/300 (54%), Gaps = 1/300 (0%)

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
           +VTD  +  L  L+ LT ++L    VT A L  L A  SL  L+L+   ++D G ++ + 
Sbjct: 59  RVTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKELAP 118

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
           + +L   NL   ++TD  L  L  + NL +L+L    I D GL +L  + +L  L+LSDT
Sbjct: 119 LKNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDLSDT 178

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
           +V  +GL+ L+ L  L ++ L  T ++D  L++LA   +L  L L   ++TD GL  L  
Sbjct: 179 KVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAP 238

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           L  L+ L L    +TD+G   L   KNL +L + G  +TDAGVK +    +LTLL+LS  
Sbjct: 239 LKSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLS-G 297

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
            N+TD  ++ ++    L  L +S++ +T  GL+ L  LK L  L L S K T   IK  Q
Sbjct: 298 TNVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFLISTKTTFAGIKEFQ 357



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 146/280 (52%), Gaps = 1/280 (0%)

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
           +G  VT   L  L  L SL  ++L+   +++ G +      SL  L+L    ITD  L  
Sbjct: 56  QGHRVTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKE 115

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  L NL + NL +  + D GL  LT + NL  L L  T++  +GL+ L  + +L +++L
Sbjct: 116 LAPLKNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDL 175

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           S T ++D  L+ LA L  L +L L   ++TDTGL  L     L  L L+  ++TD+G   
Sbjct: 176 SDTKVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKE 235

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           L   K+L  L +    +TDAG+K +  L +LT LNL     +TD  ++ ++    L  L+
Sbjct: 236 LAPLKSLSVLVLGETEVTDAGLKELAPLKNLTALNL-YGTKVTDAGVKELAPFQNLTLLD 294

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
           +S + +T AG++ L   KNL  L L S  VT   +K L S
Sbjct: 295 LSGTNVTDAGIKELARFKNLAHLELSSTAVTDVGLKELAS 334



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 2/222 (0%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L+ + NLT+L  R+   IT  G+K+   + +L  LDL        GL  L  L +L +
Sbjct: 138 KELTAIRNLTALHLRKTE-ITDAGLKSLPPMKDLTTLDLSDTKVTDAGLKALAPLERLTN 196

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L + +   +TD+ +K L+   NL  L +  +KVTD+G+  L  L+ L++L L    VT A
Sbjct: 197 LYL-YNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAPLKSLSVLVLGETEVTDA 255

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L  L+ L +L  LNL   +++D G ++ +   +L +L+L    +TD  +  L    NL 
Sbjct: 256 GLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLSGTNVTDAGIKELARFKNLA 315

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
            L L S  + D GL  L  L  L  L L  T+   +G++   
Sbjct: 316 HLELSSTAVTDVGLKELASLKKLTKLFLISTKTTFAGIKEFQ 357



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           N  +T  G+K  A L +L  L L        GL  L  L  L +LN+ +   +TD+ +K 
Sbjct: 225 NTKVTDAGLKELAPLKSLSVLVLGETEVTDAGLKELAPLKNLTALNL-YGTKVTDAGVKE 283

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L+   NL  L +S + VTD+GI  L   + L  L L    VT   L  L++L  L  L L
Sbjct: 284 LAPFQNLTLLDLSGTNVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFL 343

Query: 139 NRCQLSDDGCEKFSK 153
              + +  G ++F K
Sbjct: 344 ISTKTTFAGIKEFQK 358


>gi|149174696|ref|ZP_01853321.1| hypothetical protein PM8797T_26210 [Planctomyces maris DSM 8797]
 gi|148846390|gb|EDL60728.1| hypothetical protein PM8797T_26210 [Planctomyces maris DSM 8797]
          Length = 460

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 184/356 (51%), Gaps = 26/356 (7%)

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++K  N   D+D+K L+GL +L+ L +     TD     +    KL  L+LE   +   
Sbjct: 98  LDLKGTNA-QDADLKHLAGLPSLERLILWGPNFTDVSTEEIGKKNKLWFLSLESTAIGDE 156

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNL 181
            + +LS L  L  L+L    +++D  +  +    LK L+L FN EI DE + H+KG+ NL
Sbjct: 157 GVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFNKEINDEGMPHIKGMKNL 216

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLK-----------------------CLELSDTQVGSS 218
           + L + +  + DEG+ ++  L NL+                        LEL DT++   
Sbjct: 217 KVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISDETLELLKDKNLVSLELDDTEISDE 276

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
           G+++L  +TN+ES++L    + +  +  +  +  L++L+L    +TD G+  L+ LT LT
Sbjct: 277 GMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMKYLSGLTDLT 336

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
           +LDL  + I D G   +++ K L  L + G   TD G+K I   + L  LNL +   +TD
Sbjct: 337 YLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFTELNRLNL-EGTPITD 395

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
             L+ +  L  L  LN+S + I+  GL+ L  LKNL+ L L   +VT + +K+ ++
Sbjct: 396 AGLKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNLKELQLSFTQVTDDGVKQFEA 451



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 166/321 (51%), Gaps = 28/321 (8%)

Query: 50  GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQK 108
           G+ NL  L  L+ L+++  N IT+  +K ++    LK L +  +K + D G+ ++KG++ 
Sbjct: 157 GVKNLSDLQGLQVLSLRATN-ITNDALKVVAAFPELKDLDLRFNKEINDEGMPHIKGMKN 215

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L +L ++   VT   +  ++AL +L  LN     +SD+  E   K  +L  L L   EI+
Sbjct: 216 LKVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISDETLE-LLKDKNLVSLELDDTEIS 274

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           DE + +LK +TN+ESL+L    +G+ G+ N+  +  L+ L L DT V   G+++LSGLT+
Sbjct: 275 DEGMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMKYLSGLTD 334

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
                                   L  L+LD   I D GL  +  L  LT L L+G   T
Sbjct: 335 ------------------------LTYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETT 370

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
           D G   +  F  L  L + G  +TDAG+K +  L  L  LNLS+   ++D+ L+ ++ L 
Sbjct: 371 DQGLKVISGFTELNRLNLEGTPITDAGLKQLLPLKKLEYLNLSK-TEISDEGLKTLAALK 429

Query: 349 GLVSLNVSNSRITSAGLRHLK 369
            L  L +S +++T  G++  +
Sbjct: 430 NLKELQLSFTQVTDDGVKQFE 450



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 163/319 (51%), Gaps = 2/319 (0%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           TE +   + L  LS   + AI  +G+K  + L  L  L L      +  L  +    +L+
Sbjct: 134 TEEIGKKNKLWFLSLE-STAIGDEGVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELK 192

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            L++++   I D  M  + G+ NLK L++  ++VTD G+  +  L  L  LN  G  ++ 
Sbjct: 193 DLDLRFNKEINDEGMPHIKGMKNLKVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISD 252

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             L+ L    +L  L L+  ++SD+G +    + +++ L+L  + + +  + +++ +  L
Sbjct: 253 ETLELLKD-KNLVSLELDDTEISDEGMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKL 311

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           ++L+L    + DEG+  L+GL +L  L+L ++ +G  GL  +  L  L  + L  T  +D
Sbjct: 312 QTLHLRDTVVTDEGMKYLSGLTDLTYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTD 371

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             L+ ++G + L  LNL+   ITD GL  L  L  L +L+L    I+D G   L   KNL
Sbjct: 372 QGLKVISGFTELNRLNLEGTPITDAGLKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNL 431

Query: 302 RSLEICGGGLTDAGVKHIK 320
           + L++    +TD GVK  +
Sbjct: 432 KELQLSFTQVTDDGVKQFE 450



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 141/288 (48%), Gaps = 25/288 (8%)

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           +S  G +  L+L      D   +  + + SL+ L L     TD     +     L  L+L
Sbjct: 89  MSDDGRVLILDLKGTNAQDADLKHLAGLPSLERLILWGPNFTDVSTEEIGKKNKLWFLSL 148

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLR 245
           +S  IGDEG+ NL+ L  L+ L L  T + +  L+ ++    L+ ++L F   I+D  + 
Sbjct: 149 ESTAIGDEGVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFNKEINDEGMP 208

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
            + G+ +LK L + A Q+TD G+  + +L  L  L+ +G  I+D     L++ KNL SLE
Sbjct: 209 HIKGMKNLKVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISDETLELLKD-KNLVSLE 267

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLS------------QNCN-----------LTDKTLE 342
           +    ++D G+K++KD++++  L+L             QN             +TD+ ++
Sbjct: 268 LDDTEISDEGMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMK 327

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
            +SGLT L  L++  S I   GL  +K LK L  L L   + T   +K
Sbjct: 328 YLSGLTDLTYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLK 375


>gi|397646482|gb|EJK77289.1| hypothetical protein THAOC_00890 [Thalassiosira oceanica]
          Length = 702

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 129/389 (33%), Positives = 203/389 (52%), Gaps = 31/389 (7%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           + IT +GM AF+    L  + L  C R+    +VN+     L SLN+  C C+TD  ++ 
Sbjct: 293 HGITGKGMLAFSRSPRLHTISLANCRRLTDEAVVNISHCTSLTSLNVGGCRCLTDRSLEA 352

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           +SGL +L+ L +S C  +TD G+ +L  L  L  L+L       A      ++ +L  L 
Sbjct: 353 MSGLLDLRRLDLSQCDLITDDGLIFLGELDLLEELSLGNKSCGMAIQQRNRSI-ALKTLR 411

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSC-GIGDEG 195
           L RC +++DG +   ++ SL+ L++    ++   L   L+ LTNL SL+   C GI    
Sbjct: 412 LARCAITNDGLDYLEQLQSLEDLDINGCSLSSTALGESLEKLTNLNSLDASHCPGI---- 467

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
                 L  L+ L L+DTQ+  + +  ++ L  L S++L +  +S   LR LA L  L S
Sbjct: 468 ------LPGLEVLNLADTQISDNAMSKVAKLAGLRSLSLFYCNVSSRGLRHLASLEKLDS 521

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           LNLD+R I D G                  R+TD G +Y+   K L +L++ GGG+ D G
Sbjct: 522 LNLDSRDIGDEGRPN---------------RVTDLGCSYIAKIKTLTTLQLAGGGVGDLG 566

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
             HI  + +L  LNLSQN ++T++    ++ L+ L +LN+SN+R+TS  L+    L  L+
Sbjct: 567 CAHIATIDALESLNLSQNESITNRGAASLAALSNLRALNLSNTRVTSNALKFFHGLSKLQ 626

Query: 376 SLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           SL L  C +  + I+ LQ  ++P L   R
Sbjct: 627 SLALYGCIMEDSPIESLQD-EVPTLRCLR 654


>gi|87311782|ref|ZP_01093896.1| hypothetical protein DSM3645_04405 [Blastopirellula marina DSM
           3645]
 gi|87285456|gb|EAQ77376.1| hypothetical protein DSM3645_04405 [Blastopirellula marina DSM
           3645]
          Length = 427

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 183/356 (51%), Gaps = 27/356 (7%)

Query: 70  CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
             +D  ++PLS L ++K L++  + VTD  I  L  ++ L   +     ++ A ++ LSA
Sbjct: 70  SFSDEQLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTTISDAGIEKLSA 129

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
           L  L  L L R  +S+   E   ++  L+ L+L +++ITD  +  +  + N+E L L+  
Sbjct: 130 LKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGA 189

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
            +GDEGL +LTGL  LK L +  T V  +G + ++ LTNLE++  + T ++   +  LA 
Sbjct: 190 IVGDEGLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTALTTEGMEYLAP 249

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT--------------------- 288
           L+ +K+L L   Q+ D G   L  +  L +L L   R+                      
Sbjct: 250 LTKVKTLELMRAQVKDDGFVHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSET 309

Query: 289 ---DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
              D G  ++  FKNL  L +    +T  G+ HIKDL+++  L L     +TD +LE + 
Sbjct: 310 PFGDDGLIHVGKFKNLEKLNLWFTKVTPDGLPHIKDLTNMKTLILDYQ-GITDDSLENLV 368

Query: 346 GLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           G+  L +L++  N  IT+  +++LK LK L+ +++   ++ +  +  L+ ++LP L
Sbjct: 369 GMQKLQTLSLKDNDMITNESIKYLKQLKGLKKISITFTQIDSRGVAELK-KELPGL 423



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 176/354 (49%), Gaps = 28/354 (7%)

Query: 53  NLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
            L+ L KL+ + I   +   +TD  +  L  + +L+    + + ++D+GI  L  L+ L+
Sbjct: 75  QLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTTISDAGIEKLSALKDLS 134

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
           +L L    ++   L+S+  L  L YL+L    ++D G E  +K+ +++VL L    + DE
Sbjct: 135 VLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGAIVGDE 194

Query: 171 CLVHLKGL------------------------TNLESLNLDSCGIGDEGLVNLTGLCNLK 206
            L HL GL                        TNLE+L  +   +  EG+  L  L  +K
Sbjct: 195 GLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTALTTEGMEYLAPLTKVK 254

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            LEL   QV   G  HL  +  L+++ L  T ++   +  L G+ +LKSL++      D 
Sbjct: 255 TLELMRAQVKDDGFVHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSETPFGDD 314

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
           GL  +     L  L+L+  ++T  G  ++++  N+++L +   G+TD  ++++  +  L 
Sbjct: 315 GLIHVGKFKNLEKLNLWFTKVTPDGLPHIKDLTNMKTLILDYQGITDDSLENLVGMQKLQ 374

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
            L+L  N  +T+++++ +  L GL  ++++ ++I S G+  LK  K L  L +E
Sbjct: 375 TLSLKDNDMITNESIKYLKQLKGLKKISITFTQIDSRGVAELK--KELPGLEVE 426



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 136/262 (51%), Gaps = 27/262 (10%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E++  L  L  L  R ++ IT  GM+  A + N+  L LE       GL +L GL KL+ 
Sbjct: 149 ESMLQLPKLRYLDLRYDD-ITDAGMEIVAKMPNMEVLRLEGAIVGDEGLAHLTGLSKLKF 207

Query: 63  LNIKWCNCITDSDMKPLSGLTNL------------------------KSLQISCSKVTDS 98
           LN++  N +TD+  K ++ LTNL                        K+L++  ++V D 
Sbjct: 208 LNVRGTN-VTDAGFKSIANLTNLETLETNGTALTTEGMEYLAPLTKVKTLELMRAQVKDD 266

Query: 99  GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
           G  +LK +++L  L L    V  A +++L  + +L  L+++     DDG     K  +L+
Sbjct: 267 GFVHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSETPFGDDGLIHVGKFKNLE 326

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGS 217
            LNL F ++T + L H+K LTN+++L LD  GI D+ L NL G+  L+ L L D   + +
Sbjct: 327 KLNLWFTKVTPDGLPHIKDLTNMKTLILDYQGITDDSLENLVGMQKLQTLSLKDNDMITN 386

Query: 218 SGLRHLSGLTNLESINLSFTGI 239
             +++L  L  L+ I+++FT I
Sbjct: 387 ESIKYLKQLKGLKKISITFTQI 408



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 139/294 (47%), Gaps = 27/294 (9%)

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
           G +   +++    SD+  E  SK+  +K+L +   ++TD+ + +L  + +L   +  +  
Sbjct: 59  GVVTVADMSVASFSDEQLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTT 118

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           I D G+  L+ L +L  L+L  T + +  L  +  L  L  ++L +  I+D  +  +A +
Sbjct: 119 ISDAGIEKLSALKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKM 178

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
            +++ L L+   + D GLA LT L+ L  L++ G  +TD+G   + N  NL +LE  G  
Sbjct: 179 PNMEVLRLEGAIVGDEGLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTA 238

Query: 311 LT------------------------DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           LT                        D G  H+K++  L  L L Q   +    +E + G
Sbjct: 239 LTTEGMEYLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQNLMLRQ-TRVAGAGMENLIG 297

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           +  L SL+VS +     GL H+   KNL  L L   KVT + +  +  +DL N+
Sbjct: 298 IDTLKSLDVSETPFGDDGLIHVGKFKNLEKLNLWFTKVTPDGLPHI--KDLTNM 349


>gi|149175912|ref|ZP_01854530.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148845359|gb|EDL59704.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 495

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 182/338 (53%), Gaps = 8/338 (2%)

Query: 51  LVNLKGLMKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
           LV++  L ++ SL   W     ITD  +  L  L  L+SL I+ ++++D+GI  L  + K
Sbjct: 69  LVHVSKLTEVTSL---WIIGTEITDQGLTLLRDLQGLQSLYITNNQISDAGIQQLPQV-K 124

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L  L L G  +T   L   S    L  LN+ +  +SD G +  S+   L+ L L   +IT
Sbjct: 125 LVELTLGGTKITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLYLHETQIT 184

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           DE +  ++GL NL+SL L+   I D GL  L  L  L+ L L++T++  +GL+ L  LT 
Sbjct: 185 DEGMQQIQGLKNLKSLMLNETEITDSGLTALRNLDQLEELFLNETKITGAGLKKLERLTR 244

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           L  + LS T I+D  ++ L  L +LK L LD  Q+TD GL+ +     L  LD+   +IT
Sbjct: 245 LSKLILSETDITDADIKYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNNQIT 304

Query: 289 DSGAAY-LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           D+G  Y L+N K   S+ + G  +TDAG+  +        L+LS N  +TD  L+ ++ +
Sbjct: 305 DAGLIYLLQNGKQWSSINLSGNQITDAGLSILGKSHIELTLDLS-NTEVTDAGLKYLTSM 363

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
             L  L+++N +I+  G++ L  L  L+S+ L    +T
Sbjct: 364 NMLFGLSLNNCQISDQGVQTLMELPALKSIQLNGTDIT 401



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 194/390 (49%), Gaps = 8/390 (2%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +L GL +L    +  NN I+  G++     + LV+L L         L +      L +L
Sbjct: 98  DLQGLQSL----YITNNQISDAGIQQLPQ-VKLVELTLGGTKITDESLKHFSNSSDLNTL 152

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           N+     ++D  ++ +S    L+ L +  +++TD G+  ++GL+ L  L L    +T + 
Sbjct: 153 NVGKT-AVSDRGLQYVSQFKKLERLYLHETQITDEGMQQIQGLKNLKSLMLNETEITDSG 211

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L +L  L  L  L LN  +++  G +K  ++  L  L L   +ITD  + +LK L  L+ 
Sbjct: 212 LTALRNLDQLEELFLNETKITGAGLKKLERLTRLSKLILSETDITDADIKYLKELPALKR 271

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDG 242
           L LD   + D+GL  +    +L+ L++S+ Q+  +GL +L        SINLS   I+D 
Sbjct: 272 LYLDQTQLTDDGLSQIVDFPSLEMLDVSNNQITDAGLIYLLQNGKQWSSINLSGNQITDA 331

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L  L       +L+L   ++TD GL  LTS+  L  L L   +I+D G   L     L+
Sbjct: 332 GLSILGKSHIELTLDLSNTEVTDAGLKYLTSMNMLFGLSLNNCQISDQGVQTLMELPALK 391

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           S+++ G  +TD  ++ IK  S + +L L  +  LTD     + GLTGL  L+++N+ +T 
Sbjct: 392 SIQLNGTDITDCSLEIIKTKSDMLVLYLD-DTKLTDAGFSQLQGLTGLQILSLNNTAVTD 450

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           A L+    +  L  L L+   V+   +++L
Sbjct: 451 ASLKFFNKMTKLFELNLKQTAVSDAAVQKL 480



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 164/328 (50%), Gaps = 27/328 (8%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           + DS +  +S LT + SL I  +++TD G+  L+ LQ                      L
Sbjct: 64  VDDSILVHVSKLTEVTSLWIIGTEITDQGLTLLRDLQ---------------------GL 102

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            SL+  N    Q+SD G ++  ++  L  L LG  +ITDE L H    ++L +LN+    
Sbjct: 103 QSLYITN---NQISDAGIQQLPQV-KLVELTLGGTKITDESLKHFSNSSDLNTLNVGKTA 158

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           + D GL  ++    L+ L L +TQ+   G++ + GL NL+S+ L+ T I+D  L  L  L
Sbjct: 159 VSDRGLQYVSQFKKLERLYLHETQITDEGMQQIQGLKNLKSLMLNETEITDSGLTALRNL 218

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
             L+ L L+  +IT  GL  L  LT L+ L L    ITD+   YL+    L+ L +    
Sbjct: 219 DQLEELFLNETKITGAGLKKLERLTRLSKLILSETDITDADIKYLKELPALKRLYLDQTQ 278

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLRHLK 369
           LTD G+  I D  SL +L++S N  +TD  L  L+       S+N+S ++IT AGL  L 
Sbjct: 279 LTDDGLSQIVDFPSLEMLDVSNN-QITDAGLIYLLQNGKQWSSINLSGNQITDAGLSILG 337

Query: 370 PLKNLRSLTLESCKVTANDIKRLQSRDL 397
                 +L L + +VT   +K L S ++
Sbjct: 338 KSHIELTLDLSNTEVTDAGLKYLTSMNM 365



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 181/334 (54%), Gaps = 5/334 (1%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           ++ S  S+L +L+  +  A++ +G++  +    L +L L        G+  ++GL  L+S
Sbjct: 141 KHFSNSSDLNTLNVGKT-AVSDRGLQYVSQFKKLERLYLHETQITDEGMQQIQGLKNLKS 199

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L +     ITDS +  L  L  L+ L ++ +K+T +G+  L+ L +L+ L L    +T A
Sbjct: 200 LMLNETE-ITDSGLTALRNLDQLEELFLNETKITGAGLKKLERLTRLSKLILSETDITDA 258

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNL 181
            +  L  L +L  L L++ QL+DDG  +     SL++L++  N+ITD  L++L +     
Sbjct: 259 DIKYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNNQITDAGLIYLLQNGKQW 318

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLK-CLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
            S+NL    I D GL ++ G  +++  L+LS+T+V  +GL++L+ +  L  ++L+   IS
Sbjct: 319 SSINLSGNQITDAGL-SILGKSHIELTLDLSNTEVTDAGLKYLTSMNMLFGLSLNNCQIS 377

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           D  ++ L  L +LKS+ L+   ITD  L  + + + +  L L   ++TD+G + L+    
Sbjct: 378 DQGVQTLMELPALKSIQLNGTDITDCSLEIIKTKSDMLVLYLDDTKLTDAGFSQLQGLTG 437

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           L+ L +    +TDA +K    ++ L  LNL Q  
Sbjct: 438 LQILSLNNTAVTDASLKFFNKMTKLFELNLKQTA 471



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 137/264 (51%), Gaps = 2/264 (0%)

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
           G + ++++ L   PV  + L  +S L  +  L +   +++D G      +  L+ L +  
Sbjct: 50  GDKTVSMVMLNEIPVDDSILVHVSKLTEVTSLWIIGTEITDQGLTLLRDLQGLQSLYITN 109

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           N+I+D  +  L  +  +E L L    I DE L + +   +L  L +  T V   GL+++S
Sbjct: 110 NQISDAGIQQLPQVKLVE-LTLGGTKITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVS 168

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
               LE + L  T I+D  ++++ GL +LKSL L+  +ITD+GL AL +L  L  L L  
Sbjct: 169 QFKKLERLYLHETQITDEGMQQIQGLKNLKSLMLNETEITDSGLTALRNLDQLEELFLNE 228

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
            +IT +G   L     L  L +    +TDA +K++K+L +L  L L Q   LTD  L  I
Sbjct: 229 TKITGAGLKKLERLTRLSKLILSETDITDADIKYLKELPALKRLYLDQ-TQLTDDGLSQI 287

Query: 345 SGLTGLVSLNVSNSRITSAGLRHL 368
                L  L+VSN++IT AGL +L
Sbjct: 288 VDFPSLEMLDVSNNQITDAGLIYL 311



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 134/254 (52%), Gaps = 6/254 (2%)

Query: 149 EKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           E    +G   V  +  NEI   D  LVH+  LT + SL +    I D+GL  L  L  L+
Sbjct: 44  ESTGNLGDKTVSMVMLNEIPVDDSILVHVSKLTEVTSLWIIGTEITDQGLTLLRDLQGLQ 103

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            L +++ Q+  +G++ L  +  +E + L  T I+D SL+  +  S L +LN+    ++D 
Sbjct: 104 SLYITNNQISDAGIQQLPQVKLVE-LTLGGTKITDESLKHFSNSSDLNTLNVGKTAVSDR 162

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
           GL  ++    L  L L   +ITD G   ++  KNL+SL +    +TD+G+  +++L  L 
Sbjct: 163 GLQYVSQFKKLERLYLHETQITDEGMQQIQGLKNLKSLMLNETEITDSGLTALRNLDQLE 222

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
            L L++   +T   L+ +  LT L  L +S + IT A +++LK L  L+ L L+  ++T 
Sbjct: 223 ELFLNE-TKITGAGLKKLERLTRLSKLILSETDITDADIKYLKELPALKRLYLDQTQLTD 281

Query: 387 NDIKRLQSRDLPNL 400
           + + ++   D P+L
Sbjct: 282 DGLSQI--VDFPSL 293



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 148/306 (48%), Gaps = 4/306 (1%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + + GL NL SL       IT  G+ A   L  L +L L        GL  L+ L +L  
Sbjct: 189 QQIQGLKNLKSLMLNETE-ITDSGLTALRNLDQLEELFLNETKITGAGLKKLERLTRLSK 247

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L +   + ITD+D+K L  L  LK L +  +++TD G++ +     L +L++    +T A
Sbjct: 248 LILSETD-ITDADIKYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNNQITDA 306

Query: 123 CLDSLSALGSLFY-LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
            L  L   G  +  +NL+  Q++D G     K      L+L   E+TD  L +L  +  L
Sbjct: 307 GLIYLLQNGKQWSSINLSGNQITDAGLSILGKSHIELTLDLSNTEVTDAGLKYLTSMNML 366

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L+L++C I D+G+  L  L  LK ++L+ T +    L  +   +++  + L  T ++D
Sbjct: 367 FGLSLNNCQISDQGVQTLMELPALKSIQLNGTDITDCSLEIIKTKSDMLVLYLDDTKLTD 426

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
               +L GL+ L+ L+L+   +TD  L     +T L  L+L    ++D+    L    N 
Sbjct: 427 AGFSQLQGLTGLQILSLNNTAVTDASLKFFNKMTKLFELNLKQTAVSDAAVQKLLKKIN- 485

Query: 302 RSLEIC 307
           ++ +IC
Sbjct: 486 KTEQIC 491


>gi|46446912|ref|YP_008277.1| hypothetical protein pc1278 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400553|emb|CAF24002.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 731

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 135/384 (35%), Positives = 199/384 (51%), Gaps = 33/384 (8%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWC 68
           NL +L  +    +T  G+   A L++L  L+L  C ++   GL +L  L+ L  LN+  C
Sbjct: 348 NLKALHLQECYKLTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLAHLTPLVALRHLNLMGC 407

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDS 126
           N +T++ +  L  L  L+ L +SC + +TD+G+A+L  L  L  L L  C  +T A L  
Sbjct: 408 NKLTNAGLMHLRPLMALQHLDLSCCRNLTDAGLAHLAPLVALQHLCLSECTNLTGAGLAH 467

Query: 127 LSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESL 184
           L  L +L +LNLN C +L+D G    + + +L+ L+L     +TD  L HL+ L  L+ L
Sbjct: 468 LKPLVNLQHLNLNSCYKLTDAGLAHLTPLMALQHLDLSCCRNLTDAGLAHLRPLVALQHL 527

Query: 185 NLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISD 241
           +L+ C    D GL +LT L  L+ L LS  + +  +GL +L  L  L  +NL+     +D
Sbjct: 528 DLNCCKNFTDAGLTHLTPLVALQHLNLSCCRNLTDAGLAYLMPLVALSHLNLAGCHNFTD 587

Query: 242 GSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
             L  LA L +L+ LNL D  ++T+ GL  LT L  L HLDL                  
Sbjct: 588 AGLAHLAPLVALQHLNLGDCYRLTNAGLEHLTPLVALQHLDLSECE-------------- 633

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SR 359
                     LTDAG+ H+  L +LT L+LS+   LTD  L  ++ L  L  LN++   +
Sbjct: 634 ---------KLTDAGLTHLVPLVALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCDK 684

Query: 360 ITSAGLRHLKPLKNLRSLTLESCK 383
           +T AGL HL PL  L+ L L  CK
Sbjct: 685 LTDAGLAHLTPLLALQDLYLGYCK 708



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 166/337 (49%), Gaps = 55/337 (16%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 117
           ++E LN      +TD+ +  L    NLK+L +  C K+TD+G+ YL              
Sbjct: 323 EIERLNFSKNASLTDAHLLALKNCKNLKALHLQECYKLTDTGLVYL-------------- 368

Query: 118 PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHL 175
                     + L SL YLNL  C +L+D G    + + +L+ LNL G N++T+  L+HL
Sbjct: 369 ----------APLVSLQYLNLFDCIKLTDAGLAHLTPLVALRHLNLMGCNKLTNAGLMHL 418

Query: 176 KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 233
           + L  L+ L+L  C  + D GL +L  L  L+ L LS+ T +  +GL HL  L NL+ +N
Sbjct: 419 RPLMALQHLDLSCCRNLTDAGLAHLAPLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLN 478

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGA 292
           L+                          ++TD GLA LT L  L HLDL   R +TD+G 
Sbjct: 479 LN-----------------------SCYKLTDAGLAHLTPLMALQHLDLSCCRNLTDAGL 515

Query: 293 AYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
           A+LR    L+ L++ C    TDAG+ H+  L +L  LNLS   NLTD  L  +  L  L 
Sbjct: 516 AHLRPLVALQHLDLNCCKNFTDAGLTHLTPLVALQHLNLSCCRNLTDAGLAYLMPLVALS 575

Query: 352 SLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAN 387
            LN++     T AGL HL PL  L+ L L  C    N
Sbjct: 576 HLNLAGCHNFTDAGLAHLAPLVALQHLNLGDCYRLTN 612



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/285 (36%), Positives = 158/285 (55%), Gaps = 10/285 (3%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLS 80
           +T  G+   A L+ L  L L  CT + G GL +LK L+ L+ LN+  C  +TD+ +  L+
Sbjct: 435 LTDAGLAHLAPLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLNLNSCYKLTDAGLAHLT 494

Query: 81  GLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL 138
            L  L+ L +SC + +TD+G+A+L+ L  L  L+L  C   T A L  L+ L +L +LNL
Sbjct: 495 PLMALQHLDLSCCRNLTDAGLAHLRPLVALQHLDLNCCKNFTDAGLTHLTPLVALQHLNL 554

Query: 139 NRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEG 195
           + C+ L+D G      + +L  LNL G +  TD  L HL  L  L+ LNL  C  + + G
Sbjct: 555 SCCRNLTDAGLAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVALQHLNLGDCYRLTNAG 614

Query: 196 LVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSL 253
           L +LT L  L+ L+LS+ + +  +GL HL  L  L  ++LS    ++D  L  L  L +L
Sbjct: 615 LEHLTPLVALQHLDLSECEKLTDAGLTHLVPLVALTHLDLSECDKLTDAGLAHLTPLEAL 674

Query: 254 KSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 296
           + LNL+   ++TD GLA LT L  L  L L +    T+ G A+ +
Sbjct: 675 QHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYCKNFTEVGLAHFK 719


>gi|59802561|gb|AAX07517.1| putative regulatory subunit [Gemmata sp. Wa1-1]
          Length = 402

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/257 (40%), Positives = 149/257 (57%), Gaps = 1/257 (0%)

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  LNL   +++D G ++   +  L VL+LG  ++TD  L  L+GLTNL +       +
Sbjct: 119 SLTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAPHEV 178

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D GL  L+GL NL  L L  T+V   GL+ L GLTNL S++L  T  +D SL +L GL+
Sbjct: 179 TDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLT 238

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           +L  LNL   ++TD GL  LT L  L  LDL   ++TD+G   L+   NL  L++ G  +
Sbjct: 239 NLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSV 298

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
           TDAG+K +  LS LT+L+L  +  +T   L+ ++GL  L SL++  + +T AGL+ L  L
Sbjct: 299 TDAGLKELGRLSKLTVLDLG-STKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKELSGL 357

Query: 372 KNLRSLTLESCKVTAND 388
            NL SL L    V+  D
Sbjct: 358 ANLTSLDLFGTPVSDTD 374



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 110/282 (39%), Positives = 159/282 (56%), Gaps = 2/282 (0%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 69
           +LT L+ R    +T  G+K    L  L  LDL R      GL  L+GL  L +  I   +
Sbjct: 119 SLTGLNLRFTK-VTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTW-ISAPH 176

Query: 70  CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
            +TD+ +K LSGL NL  L +  +KVT  G+  LKGL  LT L+L G   T A L  L  
Sbjct: 177 EVTDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKG 236

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
           L +L  LNL+  +++D G ++ + + +L  L+L F ++TD  L  LKGL+NL  L+L   
Sbjct: 237 LTNLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGT 296

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
            + D GL  L  L  L  L+L  T+V  +GL+ L+GL NL S++L  T ++D  L++L+G
Sbjct: 297 SVTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKELSG 356

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           L++L SL+L    ++DT L  L  L+ LT L L    +TD G
Sbjct: 357 LANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTAVTDVG 398



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/309 (37%), Positives = 161/309 (52%), Gaps = 25/309 (8%)

Query: 84  NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 143
           +L  L +  +KVTD G+  ++ L KLT+L+L    VT A L  L  L +L        ++
Sbjct: 119 SLTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAPHEV 178

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
           +D G ++ S + +L  LNL F ++T   L  LKGLTNL SL+L      D  L  L GL 
Sbjct: 179 TDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLT 238

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           NL  L LSDT+V  +GL+ L+GL NL S++L FT ++D  L+KL GLS+L  L+L    +
Sbjct: 239 NLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSV 298

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
           TD GL  L  L+ LT LDL   ++T +G   L    NL SL +    +TDAG+K +    
Sbjct: 299 TDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKEL---- 354

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
                                SGL  L SL++  + ++   L+ LK L  L SL L    
Sbjct: 355 ---------------------SGLANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTA 393

Query: 384 VTANDIKRL 392
           VT   IK L
Sbjct: 394 VTDVGIKEL 402



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/259 (37%), Positives = 143/259 (55%), Gaps = 1/259 (0%)

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           +  + L  LN+++   +TD  +K +  L+ L  L +  +KVTD+G+  L+GL  LT    
Sbjct: 115 RDFISLTGLNLRFTK-VTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWIS 173

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
               VT A L  LS L +L  LNL   +++  G ++   + +L  L+L     TD  L  
Sbjct: 174 APHEVTDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAE 233

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           LKGLTNL  LNL    + D GL  LTGL NL  L+L  T+V  +GL+ L GL+NL  ++L
Sbjct: 234 LKGLTNLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDL 293

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
             T ++D  L++L  LS L  L+L + ++T TGL  LT L  LT L L    +TD+G   
Sbjct: 294 FGTSVTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKE 353

Query: 295 LRNFKNLRSLEICGGGLTD 313
           L    NL SL++ G  ++D
Sbjct: 354 LSGLANLTSLDLFGTPVSD 372



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/245 (36%), Positives = 127/245 (51%), Gaps = 26/245 (10%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + LSGL+NLT L+ R    +T  G+K   GL NL  LDL   +     L  LKGL  L  
Sbjct: 184 KELSGLANLTELNLRFTK-VTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLTNLTE 242

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+     +TD+ ++ L+GL NL SL +  +KVTD+G+  LKGL  L +L+L G  VT  
Sbjct: 243 LNLSDTK-VTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSVT-- 299

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
                                 D G ++  ++  L VL+LG  ++T   L  L GL NL 
Sbjct: 300 ----------------------DAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLT 337

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SL+L    + D GL  L+GL NL  L+L  T V  + L+ L  L+ L S+ L  T ++D 
Sbjct: 338 SLHLRLTAVTDAGLKELSGLANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTAVTDV 397

Query: 243 SLRKL 247
            +++L
Sbjct: 398 GIKEL 402



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           +L  LNL    + D GL  +  L  L  L+L  T+V  +GL+ L GLTNL +   +   +
Sbjct: 119 SLTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAPHEV 178

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           +D  L++L+GL++L  LNL   ++T  GL  L  LT LT LDLFG   TD+  A L+   
Sbjct: 179 TDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLT 238

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
           NL  L +    +TDAG++ +  L++L  L+L +   +TD  L+ + GL+ L  L++  + 
Sbjct: 239 NLTELNLSDTKVTDAGLQELTGLANLASLDL-RFTKVTDAGLQKLKGLSNLAVLDLFGTS 297

Query: 360 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
           +T AGL+ L  L  L  L L S KVT   +K L    L NL S 
Sbjct: 298 VTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTG--LANLTSL 339


>gi|46447562|ref|YP_008927.1| hypothetical protein pc1928 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401203|emb|CAF24652.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 528

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 182/339 (53%), Gaps = 32/339 (9%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           +++ LN      +TD+    L    NLK+L   +C  +TD+G+A+LK L  L  LNL GC
Sbjct: 195 EIKKLNFSENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNLSGC 254

Query: 118 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 174
             +T   L  L+ L  L +L+L++C   +DDG    + + +L+ L L G   + D  L H
Sbjct: 255 YHLTDVGLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAH 314

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           LK LT+L+ LNL  CG                   L+D     +GL HL+ LT L+ +NL
Sbjct: 315 LKPLTSLQHLNLRGCGY------------------LTD-----AGLAHLAPLTGLQHLNL 351

Query: 235 S-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-ARITDSG 291
           S    ++D  L  L  L +L+ LNLD  R++TD GLA LT +T L HLDL     +TD G
Sbjct: 352 SKCENLTDVGLAHLRLLVALQYLNLDNCRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIG 411

Query: 292 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
            A+L   K+L+ L++     LTD G+ H+  L++L  L+LS   NLTD  L  ++ LT L
Sbjct: 412 LAHLTPLKSLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTL 471

Query: 351 VSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 388
             L++   + +T  GL HL PL  L+ L L  CK   +D
Sbjct: 472 QHLDLMGCKNLTDDGLAHLTPLIALQYLDLIGCKNFTDD 510



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/330 (37%), Positives = 178/330 (53%), Gaps = 14/330 (4%)

Query: 14  LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 72
           L+F  N  +T           NL  L  E C  +   GL +LK L  L+ LN+  C  +T
Sbjct: 199 LNFSENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNLSGCYHLT 258

Query: 73  DSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSAL 130
           D  +  L+ LT L+ L +S C   TD G+A+L  L  L  L L GC  +  A L  L  L
Sbjct: 259 DVGLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAHLKPL 318

Query: 131 GSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS 188
            SL +LNL  C  L+D G    + +  L+ LNL   E +TD  L HL+ L  L+ LNLD+
Sbjct: 319 TSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDN 378

Query: 189 C-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLR 245
           C  + D+GL +LT + NL+ L+LS    +   GL HL+ L +L+ ++LS    ++D  L 
Sbjct: 379 CRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLV 438

Query: 246 KLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRS 303
            L  L++L+ L+L     +TD GLA LT LT L HLDL G + +TD G A+L     L+ 
Sbjct: 439 HLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQY 498

Query: 304 LEICG-GGLTDAGVKHIKDLSS---LTLLN 329
           L++ G    TD G+   K+L++   LT++N
Sbjct: 499 LDLIGCKNFTDDGLARFKNLAASLNLTIIN 528



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 143/263 (54%), Gaps = 10/263 (3%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR-IHGGLVNLKGLMKLES 62
           +L+ L+ L  L   +    T  G+     L  L  L L  C   I  GL +LK L  L+ 
Sbjct: 264 HLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAHLKPLTSLQH 323

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 120
           LN++ C  +TD+ +  L+ LT L+ L +S C  +TD G+A+L+ L  L  LNL+ C  +T
Sbjct: 324 LNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDNCRKLT 383

Query: 121 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGL 178
              L  L+ + +L +L+L++C  L+D G    + + SL+ L+L   E +TD+ LVHL  L
Sbjct: 384 DDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLVHLTPL 443

Query: 179 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL-S 235
           T L+ L+L  C  + D+GL +LT L  L+ L+L   + +   GL HL+ L  L+ ++L  
Sbjct: 444 TALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQYLDLIG 503

Query: 236 FTGISDGSLRKLAGLSSLKSLNL 258
               +D  L +   L++  SLNL
Sbjct: 504 CKNFTDDGLARFKNLAA--SLNL 524


>gi|46447129|ref|YP_008494.1| hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400770|emb|CAF24219.1| hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 559

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/333 (37%), Positives = 177/333 (53%), Gaps = 32/333 (9%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           ++E+LN      +TD+    L    NLK L  +SC  +TD  +A+L  L  L  LNL  C
Sbjct: 226 EIEALNFSNNTYLTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQHLNLSKC 285

Query: 118 -PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 174
             +T   L  L+ L +L +L+L+ C+ L+D G    + + +L+ LNL GF ++TD  LVH
Sbjct: 286 RKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLTDAGLVH 345

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LT L+ L+L  C        NLT                 +GL HL+ LT L+ +NL
Sbjct: 346 LTPLTALQYLDLSWCK-------NLT----------------DAGLAHLTPLTGLQHLNL 382

Query: 235 S-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSG 291
           S +  ++D  L +L  L++L+ L+L D   +T  GL  LTSLT L HL L +   +TD+G
Sbjct: 383 SGWYHLTDAGLARLIFLTALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAG 442

Query: 292 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
             +L     L+ L + G   LTDAG+ H+  L++L  LNL    NLTD  L  ++ LT L
Sbjct: 443 LIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYLTPLTAL 502

Query: 351 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 382
             LN+S    +T AGL HL  L  L+ L L  C
Sbjct: 503 QHLNLSRCKHLTEAGLTHLASLTALQHLNLSYC 535



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 186/361 (51%), Gaps = 33/361 (9%)

Query: 5   LSGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLES 62
           ++ LSN + +L+F  N  +T     A     NL  L L  C  I    L +L  L  L+ 
Sbjct: 220 INHLSNEIEALNFSNNTYLTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQH 279

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 120
           LN+  C  +TD+ +  L+ LT L+ L +S C  +TD+G+A+L  L+ L  LNL G   +T
Sbjct: 280 LNLSKCRKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLT 339

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
            A L  L+ L +L YL+L+ C+                        +TD  L HL  LT 
Sbjct: 340 DAGLVHLTPLTALQYLDLSWCK-----------------------NLTDAGLAHLTPLTG 376

Query: 181 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-T 237
           L+ LNL     + D GL  L  L  L+ L+LSD + + S+GL  L+ LT L+ + LS+  
Sbjct: 377 LQHLNLSGWYHLTDAGLARLIFLTALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCM 436

Query: 238 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL 295
            ++D  L  L  L++L+ LNL     +TD GL  LT LT L HL+L G   +TD+G AYL
Sbjct: 437 NLTDAGLIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYL 496

Query: 296 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
                L+ L +     LT+AG+ H+  L++L  LNLS   NLTD  LE    L   ++L 
Sbjct: 497 TPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSYCDNLTDAGLERFKALAASLNLK 556

Query: 355 V 355
           +
Sbjct: 557 I 557



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 108/182 (59%), Gaps = 9/182 (4%)

Query: 222 HLSGLT---NLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG 276
           H S L    NL+ ++L S   I+D  L  L  L++L+ LNL   R++TDTGL  LT LT 
Sbjct: 242 HFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQHLNLSKCRKLTDTGLVHLTPLTA 301

Query: 277 LTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 334
           L HLDL +   +TD+G A+L   K L+ L + G G LTDAG+ H+  L++L  L+LS   
Sbjct: 302 LQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLTDAGLVHLTPLTALQYLDLSWCK 361

Query: 335 NLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRL 392
           NLTD  L  ++ LTGL  LN+S    +T AGL  L  L  L+ L L  C+ +T+  ++RL
Sbjct: 362 NLTDAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFLTALQHLDLSDCENLTSAGLERL 421

Query: 393 QS 394
            S
Sbjct: 422 TS 423



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 18/171 (10%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI---------------H 48
           NLSG  +LT     R   +TA      +   NL    LER T +                
Sbjct: 381 NLSGWYHLTDAGLARLIFLTALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTD 440

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQ 107
            GL++L  L  L+ LN+  C  +TD+ +  L+ LT L+ L +  C  +TD+G+AYL  L 
Sbjct: 441 AGLIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYLTPLT 500

Query: 108 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGS 156
            L  LNL  C  +T A L  L++L +L +LNL+ C  L+D G E+F  + +
Sbjct: 501 ALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSYCDNLTDAGLERFKALAA 551


>gi|348688896|gb|EGZ28710.1| hypothetical protein PHYSODRAFT_322345 [Phytophthora sojae]
          Length = 683

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 138/404 (34%), Positives = 216/404 (53%), Gaps = 17/404 (4%)

Query: 5   LSGLSNLTSLSFRRNNA--ITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLE 61
           L+ L +LT+L+    N   +T  G+ A AG+ +L  L+L  C+++   G+ +L  L+ L 
Sbjct: 274 LARLKHLTTLNLWYANQGNLTDDGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLR 333

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PV 119
            L       +TD+ +K L+ L +L +L I+ C  +TD+G + L     L+  NL  C  +
Sbjct: 334 HLEFANVGEVTDNGLKALAPLVDLITLDIAGCYNITDAGTSVLANFPNLSSCNLWYCSEI 393

Query: 120 TAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL--GFNEITDECLVHLK 176
                + + +L  + +LN  +C +++D G    SK+ +L  L++   FN +TD+ L  L 
Sbjct: 394 GDTTFEHMESLTKMRFLNFMKCGKVTDKGLRSISKLRNLTSLDMVSCFN-VTDDGLNELV 452

Query: 177 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 234
           GL  L+SL L  C GI D+G+  L+ L +L  L+LS+  QVG+  L  L  L NL ++NL
Sbjct: 453 GLHRLKSLYLGGCSGIRDDGIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNLNL 512

Query: 235 -SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RITDSG 291
                I D  +  LAGL  LK+LNL + R +TD     +  +T L  + L+   ++TD+G
Sbjct: 513 MRCNRIDDEGIAYLAGLKRLKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTDTG 572

Query: 292 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
              L +   L+S+++     LTDA +     +  LT L+L   C LTD+ +  +  +T L
Sbjct: 573 VMNLASLTKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVTSL 632

Query: 351 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 392
            SLN+S    IT AGL HL  L NL ++ L  C KVT   I  L
Sbjct: 633 TSLNLSECGEITDAGLAHLAALVNLTNINLWYCTKVTKTGIDHL 676



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 180/338 (53%), Gaps = 11/338 (3%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L  L NL  L F     +T  G+KA A L++L+ LD+  C  I   G   L     L S
Sbjct: 325 SLGALVNLRHLEFANVGEVTDNGLKALAPLVDLITLDIAGCYNITDAGTSVLANFPNLSS 384

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 120
            N+ +C+ I D+  + +  LT ++ L  + C KVTD G+  +  L+ LT L++  C  VT
Sbjct: 385 CNLWYCSEIGDTTFEHMESLTKMRFLNFMKCGKVTDKGLRSISKLRNLTSLDMVSCFNVT 444

Query: 121 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGL 178
              L+ L  L  L  L L  C  + DDG    S++ SL +L+L    ++ ++ L+ L  L
Sbjct: 445 DDGLNELVGLHRLKSLYLGGCSGIRDDGIAALSQLKSLVILDLSNCRQVGNKALLGLGEL 504

Query: 179 TNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF 236
            NL +LNL  C  I DEG+  L GL  LK L LS+ + +  +    ++ +T LESI L +
Sbjct: 505 HNLTNLNLMRCNRIDDEGIAYLAGLKRLKTLNLSNCRLLTDAATTTIAQMTELESIVLWY 564

Query: 237 TG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAA 293
              ++D  +  LA L+ L+S++L +  ++TD  L+   S+  LT LDL     +TD G A
Sbjct: 565 CNKLTDTGVMNLASLTKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMA 624

Query: 294 YLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 330
            L    +L SL +   G +TDAG+ H+  L +LT +NL
Sbjct: 625 TLGKVTSLTSLNLSECGEITDAGLAHLAALVNLTNINL 662



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 180/366 (49%), Gaps = 26/366 (7%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK---VTDSGIAYLKGLQKLTLLN 113
           L KL  L+++ C+ + D  ++ L+ L +L +L +  +    +TD GI+ L G+  LT LN
Sbjct: 252 LPKLNYLSLRGCSQVGDIGIRELARLKHLTTLNLWYANQGNLTDDGISALAGVTSLTSLN 311

Query: 114 LEGC-PVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDE 170
           L  C  +T   + SL AL +L +L   N  +++D+G +  + +  L  L++ G   ITD 
Sbjct: 312 LSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKALAPLVDLITLDIAGCYNITDA 371

Query: 171 CLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTN 228
               L    NL S NL  C  IGD    ++  L  ++ L      +V   GLR +S L N
Sbjct: 372 GTSVLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLNFMKCGKVTDKGLRSISKLRN 431

Query: 229 LESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR 286
           L S+++ S   ++D  L +L GL  LKSL L     I D G+AAL+ L  L  LDL   R
Sbjct: 432 LTSLDMVSCFNVTDDGLNELVGLHRLKSLYLGGCSGIRDDGIAALSQLKSLVILDLSNCR 491

Query: 287 ITDS----GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTL 341
              +    G   L N  NL  +      + D G+ ++  L  L  LNLS NC  LTD   
Sbjct: 492 QVGNKALLGLGELHNLTNLNLMRC--NRIDDEGIAYLAGLKRLKTLNLS-NCRLLTDAAT 548

Query: 342 ELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK-------VTANDIKRLQ 393
             I+ +T L S+ +   +++T  G+ +L  L  L+S+ L SC         T   I +L 
Sbjct: 549 TTIAQMTELESIVLWYCNKLTDTGVMNLASLTKLQSIDLASCSKLTDACLSTFPSIPKLT 608

Query: 394 SRDLPN 399
           S DL N
Sbjct: 609 SLDLGN 614



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 136/266 (51%), Gaps = 32/266 (12%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLE 61
           E++  L+ +  L+F +   +T +G+++ + L NL  LD+  C  +   GL  L GL +L+
Sbjct: 399 EHMESLTKMRFLNFMKCGKVTDKGLRSISKLRNLTSLDMVSCFNVTDDGLNELVGLHRLK 458

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQIS--------------------------CSKV 95
           SL +  C+ I D  +  LS L +L  L +S                          C+++
Sbjct: 459 SLYLGGCSGIRDDGIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNLNLMRCNRI 518

Query: 96  TDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK 153
            D GIAYL GL++L  LNL  C  +T A   +++ +  L  + L  C +L+D G    + 
Sbjct: 519 DDEGIAYLAGLKRLKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTDTGVMNLAS 578

Query: 154 IGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELS 211
           +  L+ ++L   +++TD CL     +  L SL+L +C  + DEG+  L  + +L  L LS
Sbjct: 579 LTKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVTSLTSLNLS 638

Query: 212 DT-QVGSSGLRHLSGLTNLESINLSF 236
           +  ++  +GL HL+ L NL +INL +
Sbjct: 639 ECGEITDAGLAHLAALVNLTNINLWY 664



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 3/131 (2%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKL 60
           T  ++ ++ L S+     N +T  G+   A L  L  +DL  C+++    L     + KL
Sbjct: 548 TTTIAQMTELESIVLWYCNKLTDTGVMNLASLTKLQSIDLASCSKLTDACLSTFPSIPKL 607

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-P 118
            SL++  C  +TD  M  L  +T+L SL +S C ++TD+G+A+L  L  LT +NL  C  
Sbjct: 608 TSLDLGNCCLLTDEGMATLGKVTSLTSLNLSECGEITDAGLAHLAALVNLTNINLWYCTK 667

Query: 119 VTAACLDSLSA 129
           VT   +D L  
Sbjct: 668 VTKTGIDHLPV 678



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 35/192 (18%)

Query: 226 LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL------------ 271
             NL+ +NL+  + ++D S+ +LA +  ++S+ L    Q+TD G+ AL            
Sbjct: 174 FPNLKEVNLTGCSNLTDESVEQLAQIPRMESIALKGCYQVTDKGIIALTESLSSSLTSLN 233

Query: 272 ----------------TSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEIC---GGGL 311
                            +L  L +L L G +++ D G   L   K+L +L +     G L
Sbjct: 234 LGYCKVVSDEAVSAIAANLPKLNYLSLRGCSQVGDIGIRELARLKHLTTLNLWYANQGNL 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKP 370
           TD G+  +  ++SLT LNLS    LTD  +  +  L  L  L  +N   +T  GL+ L P
Sbjct: 294 TDDGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKALAP 353

Query: 371 LKNLRSLTLESC 382
           L +L +L +  C
Sbjct: 354 LVDLITLDIAGC 365


>gi|168705463|ref|ZP_02737740.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 362

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 169/301 (56%), Gaps = 3/301 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
             +TD+D+K L+ LT L  L +S + VTD+G+ +L  L KLT LNL G  +T A    L+
Sbjct: 53  KTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTKITDAGPTELA 112

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L  L  LNL+  Q++D G ++ +++ +L  L+L    +T+  L HL  LT + SL+L  
Sbjct: 113 PLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSLSLRG 171

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             I D GL  +  + ++  L+LS T +   GL+ L     +  ++LS T ++   L++LA
Sbjct: 172 TKITDGGLREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLKELA 230

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
              +LK L+L   ++ D GL  L  L  L  L L G  +T +G   L   + LR LE+ G
Sbjct: 231 SQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILELTG 290

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
             +T  G+KH+  L  L +L LS +  +TD+ L+ I+ L  L++L++  +++T AG+  L
Sbjct: 291 TMVTGGGLKHLSTLPRLAILRLS-DAAVTDEGLKDIAHLKTLLALDLYRTKVTGAGVAEL 349

Query: 369 K 369
           +
Sbjct: 350 R 350



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 155/303 (51%), Gaps = 3/303 (0%)

Query: 18  RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 77
           R   +T   +KA A L  L  LDL        GL +L  L KL +LN+     ITD+   
Sbjct: 51  RGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTK-ITDAGPT 109

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
            L+ L  L  L +S ++VTD+G+  +  L+ L  L+L    VT A L  L+ L  +  L+
Sbjct: 110 ELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSLS 168

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           L   +++D G  +  +I S+  L+L    +TDE L  L     +  L+L    +   GL 
Sbjct: 169 LRGTKITDGGLREI-RIMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLK 227

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
            L     LK L LS T+VG +GL+HL+ L  LES+ L+ TG++   +++LA L  L+ L 
Sbjct: 228 ELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILE 287

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
           L    +T  GL  L++L  L  L L  A +TD G   + + K L +L++    +T AGV 
Sbjct: 288 LTGTMVTGGGLKHLSTLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLYRTKVTGAGVA 347

Query: 318 HIK 320
            ++
Sbjct: 348 ELR 350



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 155/315 (49%), Gaps = 28/315 (8%)

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           +T + L G  VT A L +L+ L  L  L+L+   ++D G +  + +  L  LNLG  +IT
Sbjct: 45  VTHVMLRGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTKIT 104

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           D     L  L  L  LNL S  + D GL  +  L  L  L+LS T V ++GL HL+ LT 
Sbjct: 105 DAGPTELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTK 163

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           + S++L  T I+DG LR++  + S+  L+L    +TD GL  L     +T LDL   ++T
Sbjct: 164 MRSLSLRGTKITDGGLREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVT 222

Query: 289 ------------------------DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 324
                                   D+G  +L   K L SL + G G+T  GVK +  L  
Sbjct: 223 SNGLKELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLER 282

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           L +L L+    +T   L+ +S L  L  L +S++ +T  GL+ +  LK L +L L   KV
Sbjct: 283 LRILELT-GTMVTGGGLKHLSTLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLYRTKV 341

Query: 385 TANDIKRLQSRDLPN 399
           T   +  L+ + LP 
Sbjct: 342 TGAGVAELR-KALPR 355



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 143/274 (52%), Gaps = 5/274 (1%)

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
           G + ++ L    ++D   +  + +  L  L+L    +TD  L HL  LT L +LNL    
Sbjct: 43  GVVTHVMLRGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTK 102

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           I D G   L  L  L  L LS TQV  +GL+ ++ L  L +++LS TG+++  L  L  L
Sbjct: 103 ITDAGPTELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-L 161

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
           + ++SL+L   +ITD GL  +  ++ ++ LDL G  +TD G   L  F+ +  L++    
Sbjct: 162 TKMRSLSLRGTKITDGGLREIRIMS-VSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTK 220

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           +T  G+K +    +L  L+LS+   + D  L+ ++ L  L SL ++ + +T  G++ L P
Sbjct: 221 VTSNGLKELASQPTLKFLSLSR-TKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAP 279

Query: 371 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           L+ LR L L    VT   +K L +  LP L   R
Sbjct: 280 LERLRILELTGTMVTGGGLKHLST--LPRLAILR 311


>gi|46447199|ref|YP_008564.1| hypothetical protein pc1565 [Candidatus Protochlamydia amoebophila
            UWE25]
 gi|46400840|emb|CAF24289.1| hypothetical protein pc1565 [Candidatus Protochlamydia amoebophila
            UWE25]
          Length = 1143

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 141/373 (37%), Positives = 197/373 (52%), Gaps = 12/373 (3%)

Query: 11   LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 69
            + SL F  N  +T   + A     NL  L L  C      GL +L  L+ L+ L++  C 
Sbjct: 756  IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCY 815

Query: 70   CITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 127
             ITDS +  LS L  L+ L +  C ++TDSG+ YL  L  L  LNL  C  +T   L  L
Sbjct: 816  KITDSGLAHLSRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYL 875

Query: 128  SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLN 185
            S L +L YL+L+RC +++D G    S + +L+ LNLG  N +TD  L HL  LT+L+ L+
Sbjct: 876  SHLVALQYLDLDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLD 935

Query: 186  LDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDG 242
            L  C  + D GL +L+ L NL+ L L+    +   GL HLS L  L+ ++L     I+D 
Sbjct: 936  LRDCAKLTDSGLAHLSLLVNLQYLNLNRCNNLTDRGLAHLSHLVALQHLDLGECYKITDS 995

Query: 243  SLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKN 300
             L  L+ L +L+ LNL+    +TD GLA L+ L  L HL+L     +TD G AYL     
Sbjct: 996  GLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQHLNLNCCVCLTDDGLAYLSPLVA 1055

Query: 301  LRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-S 358
            LR L +     LT AG+ H+  L +L  LNLS   +L D  L  ++ L  L  L++S   
Sbjct: 1056 LRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECP 1115

Query: 359  RITSAGLRHLKPL 371
              T +GL H K L
Sbjct: 1116 YFTISGLAHFKAL 1128



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 136/344 (39%), Positives = 182/344 (52%), Gaps = 34/344 (9%)

Query: 49   GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 107
              L+ LK    L+ L +  C   TD+ +  LS L  L+ L +  C K+TDSG+A+L  L 
Sbjct: 770  AHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCYKITDSGLAHLSRLV 829

Query: 108  KLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-F 164
             L  L+L GC  +T + L  LS L +L +LNLNRC  L+DDG    S + +L+ L+L   
Sbjct: 830  ALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLDLDRC 889

Query: 165  NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 222
             +ITD  L HL  L  L+ LNL  C  + D GL +L+ L +LK L+L D  ++  SGL H
Sbjct: 890  WKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAH 949

Query: 223  LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
            LS L NL+ +NL+                           +TD GLA L+ L  L HLDL
Sbjct: 950  LSLLVNLQYLNLN-----------------------RCNNLTDRGLAHLSHLVALQHLDL 986

Query: 283  FG-ARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
                +ITDSG A+L    NL+ L +  C   LTD G+ H+  L +L  LNL+    LTD 
Sbjct: 987  GECYKITDSGLAHLSLLVNLQYLNLNRCDN-LTDRGLAHLSRLVTLQHLNLNCCVCLTDD 1045

Query: 340  TLELISGLTGLVSLNV-SNSRITSAGLRHLKPLKNLRSLTLESC 382
             L  +S L  L  LN+ S   +TSAGL HL PL  L+ L L  C
Sbjct: 1046 GLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYC 1089



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 127/334 (38%), Positives = 179/334 (53%), Gaps = 11/334 (3%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 107
             L+ LK    L+ L +  C   TD+ +  LS L  L+ L +  C K+TDSG+ YL  L 
Sbjct: 205 AHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCYKITDSGLTYLSRLV 264

Query: 108 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF- 164
            L  LNL  C  +T   L  LS L +L +L+L  C +++D G    S + +L+ LNLG  
Sbjct: 265 ALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHLSSLLALQHLNLGCC 324

Query: 165 NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 222
           N +TD  L HL  LT+L+ L+L  C  + D GL +L+ L NL+ L L+    +   GL H
Sbjct: 325 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSH 384

Query: 223 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHL 280
           LS L  L+ ++L     ++   L  L+ L +L+ L+LD   +ITD GLA L+ L  L HL
Sbjct: 385 LSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHL 444

Query: 281 DL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
           +L   A +TD G AYL     LR L + C G LT AG+ H+  L +L  LNLS   +L D
Sbjct: 445 NLNCCACLTDDGLAYLSPLVALRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYCDSLND 504

Query: 339 KTLELISGLTGLVSLNVSN-SRITSAGLRHLKPL 371
             L  ++ L  L  L++S     T +GL H   L
Sbjct: 505 NGLTHLTRLASLKHLDLSECPYFTDSGLAHFTAL 538



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 178/333 (53%), Gaps = 34/333 (10%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC- 117
           +ESL+      +TD+ +  L    NLK L++  C   TD+G+A+L  L  L  L+L GC 
Sbjct: 191 IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCY 250

Query: 118 PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHL 175
            +T + L  LS L +L +LNLN C  L+DDG    S + +L+ L+LG   +ITD  L HL
Sbjct: 251 KITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHL 310

Query: 176 KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 233
             L  L+ LNL  C  + D GL +L+ L +LK L+L D  ++  SGL HLS L NL+ +N
Sbjct: 311 SSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLN 370

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGA 292
           L+                  +  NL     TD GL+ L+ L  L +LDL    ++T SG 
Sbjct: 371 LN------------------RCYNL-----TDRGLSHLSHLVALQYLDLGLCKKLTSSGL 407

Query: 293 AYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
           A+L     L+ L++  CG  +TD G+ H+  L +L  LNL+    LTD  L  +S L  L
Sbjct: 408 AHLSPLVALQYLDLDRCGE-ITDRGLAHLSRLVALQHLNLNCCACLTDDGLAYLSPLVAL 466

Query: 351 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 382
             LN+     +TSAGL HL PL  L+ L L  C
Sbjct: 467 RHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYC 499



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 115/289 (39%), Positives = 162/289 (56%), Gaps = 13/289 (4%)

Query: 5   LSGLSNLTSLSFRRNNA---ITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKL 60
           L+ LS L +L     N    +T  G+   + L+ L  LDL  C +I   GL +L  L+ L
Sbjct: 257 LTYLSRLVALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHLSSLLAL 316

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP- 118
           + LN+  CN +TDS +  LS LT+LK L +  C+K+TDSG+A+L  L  L  LNL  C  
Sbjct: 317 QHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCYN 376

Query: 119 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLK 176
           +T   L  LS L +L YL+L  C +L+  G    S + +L+ L+L    EITD  L HL 
Sbjct: 377 LTDRGLSHLSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGEITDRGLAHLS 436

Query: 177 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINL 234
            L  L+ LNL+ C  + D+GL  L+ L  L+ L L     + S+GL HL+ L  L+ +NL
Sbjct: 437 RLVALQHLNLNCCACLTDDGLAYLSPLVALRHLNLRCCGNLTSAGLAHLTPLIALQYLNL 496

Query: 235 SF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL-TGLTHL 280
           S+   ++D  L  L  L+SLK L+L +    TD+GLA  T+L T LTH 
Sbjct: 497 SYCDSLNDNGLTHLTRLASLKHLDLSECPYFTDSGLAHFTALATSLTHF 545



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/281 (38%), Positives = 159/281 (56%), Gaps = 9/281 (3%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESL 63
            LS L  L  L+  R   +T  G+   + L+ L  LDL+RC +I   GL +L  L+ L+ L
Sbjct: 850  LSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLDLDRCWKITDRGLAHLSSLLALQHL 909

Query: 64   NIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTA 121
            N+  CN +TDS +  LS LT+LK L +  C+K+TDSG+A+L  L  L  LNL  C  +T 
Sbjct: 910  NLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCNNLTD 969

Query: 122  ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLT 179
              L  LS L +L +L+L  C +++D G    S + +L+ LNL   + +TD  L HL  L 
Sbjct: 970  RGLAHLSHLVALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLV 1029

Query: 180  NLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSF- 236
             L+ LNL+ C  + D+GL  L+ L  L+ L L S   + S+GL HL+ L  L+ +NLS+ 
Sbjct: 1030 TLQHLNLNCCVCLTDDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYC 1089

Query: 237  TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTG 276
              ++D  L  L  L+SLK L+L +    T +GLA   +L  
Sbjct: 1090 DSLNDNGLTHLTRLASLKHLDLSECPYFTISGLAHFKALAA 1130



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 120/332 (36%), Positives = 175/332 (52%), Gaps = 11/332 (3%)

Query: 4    NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
            +LS L  L  L       IT  G+   + L+ L  LDL  C  I   GL  L  L+ L+ 
Sbjct: 799  HLSPLVALQHLDLGGCYKITDSGLAHLSRLVALQHLDLGGCYEITDSGLTYLSRLVALQH 858

Query: 63   LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 120
            LN+  C C+TD  +  LS L  L+ L +  C K+TD G+A+L  L  L  LNL  C  +T
Sbjct: 859  LNLNRCVCLTDDGLAYLSHLVALQYLDLDRCWKITDRGLAHLSSLLALQHLNLGCCNNLT 918

Query: 121  AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGL 178
             + L  LS L SL +L+L  C +L+D G    S + +L+ LNL   N +TD  L HL  L
Sbjct: 919  DSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCNNLTDRGLAHLSHL 978

Query: 179  TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS- 235
              L+ L+L  C  I D GL +L+ L NL+ L L+    +   GL HLS L  L+ +NL+ 
Sbjct: 979  VALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQHLNLNC 1038

Query: 236  FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 293
               ++D  L  L+ L +L+ LNL +   +T  GLA LT L  L +L+L +   + D+G  
Sbjct: 1039 CVCLTDDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLT 1098

Query: 294  YLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
            +L    +L+ L++      T +G+ H K L++
Sbjct: 1099 HLTRLASLKHLDLSECPYFTISGLAHFKALAA 1130



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 120/332 (36%), Positives = 177/332 (53%), Gaps = 32/332 (9%)

Query: 60   LESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC- 117
            +ESL+      +TD+ +  L    NLK L++  C   TD+G+A+L  L  L  L+L GC 
Sbjct: 756  IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCY 815

Query: 118  PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHL 175
             +T + L  LS L +L +L+L  C +++D G    S++ +L+ LNL     +TD+ L +L
Sbjct: 816  KITDSGLAHLSRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYL 875

Query: 176  KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 233
              L  L+ L+LD C  I D GL +L+ L  L+ L L     +  SGL HLS LT+L+ ++
Sbjct: 876  SHLVALQYLDLDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLD 935

Query: 234  L-SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
            L     ++D  L  L+ L +L+ LNL+    +TD GLA L+ L  L HLDL        G
Sbjct: 936  LRDCAKLTDSGLAHLSLLVNLQYLNLNRCNNLTDRGLAHLSHLVALQHLDL--------G 987

Query: 292  AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
              Y                +TD+G+ H+  L +L  LNL++  NLTD+ L  +S L  L 
Sbjct: 988  ECY---------------KITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQ 1032

Query: 352  SLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 382
             LN++    +T  GL +L PL  LR L L SC
Sbjct: 1033 HLNLNCCVCLTDDGLAYLSPLVALRHLNLRSC 1064



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/234 (37%), Positives = 127/234 (54%), Gaps = 8/234 (3%)

Query: 167  ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 224
            +TD  L+ LK   NL+ L L  C    D GL +L+ L  L+ L+L    ++  SGL HLS
Sbjct: 767  LTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCYKITDSGLAHLS 826

Query: 225  GLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 282
             L  L+ ++L     I+D  L  L+ L +L+ LNL+    +TD GLA L+ L  L +LDL
Sbjct: 827  RLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLDL 886

Query: 283  FGA-RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
                +ITD G A+L +   L+ L + C   LTD+G+ H+  L+SL  L+L     LTD  
Sbjct: 887  DRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSG 946

Query: 341  LELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 392
            L  +S L  L  LN++  + +T  GL HL  L  L+ L L  C K+T + +  L
Sbjct: 947  LAHLSLLVNLQYLNLNRCNNLTDRGLAHLSHLVALQHLDLGECYKITDSGLAHL 1000



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 114/224 (50%), Gaps = 6/224 (2%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLES 62
           +LS L++L  L  R    +T  G+   + L+NL  L+L RC  +   GL +L  L+ L+ 
Sbjct: 334 HLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSHLSHLVALQY 393

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           L++  C  +T S +  LS L  L+ L +  C ++TD G+A+L  L  L  LNL  C  +T
Sbjct: 394 LDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHLNLNCCACLT 453

Query: 121 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 178
              L  LS L +L +LNL  C  L+  G    + + +L+ LNL + + + D  L HL  L
Sbjct: 454 DDGLAYLSPLVALRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRL 513

Query: 179 TNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
            +L+ L+L  C    D GL + T L          +QVGS  L 
Sbjct: 514 ASLKHLDLSECPYFTDSGLAHFTALATSLTHFYCWSQVGSEHLE 557



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 80/210 (38%), Positives = 114/210 (54%), Gaps = 7/210 (3%)

Query: 181 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FT 237
           +ESL+  ++  + D  L+ L    NLK L L + +    +GL HLS L  L+ ++L    
Sbjct: 191 IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCY 250

Query: 238 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 295
            I+D  L  L+ L +L+ LNL+    +TD GLA L+ L  L HLDL    +ITDSG A+L
Sbjct: 251 KITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHL 310

Query: 296 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
            +   L+ L + C   LTD+G+ H+  L+SL  L+L     LTD  L  +S L  L  LN
Sbjct: 311 SSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLN 370

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
           ++    +T  GL HL  L  L+ L L  CK
Sbjct: 371 LNRCYNLTDRGLSHLSHLVALQYLDLGLCK 400



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 295 LRNFKNLRSLEICGG----------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
              F NL S EI GG           LTDA +  +KD  +L +L L +  N TD  L  +
Sbjct: 176 FEEFLNLFSNEIEGGIESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHL 235

Query: 345 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           S L  L  L++    +IT +GL +L  L  L+ L L  C    +D
Sbjct: 236 SRLVALQHLDLGGCYKITDSGLTYLSRLVALQHLNLNCCVCLTDD 280


>gi|406835528|ref|ZP_11095122.1| hypothetical protein SpalD1_27934 [Schlesneria paludicola DSM
           18645]
          Length = 590

 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 129/382 (33%), Positives = 196/382 (51%), Gaps = 16/382 (4%)

Query: 21  AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN--CITDSDMKP 78
            I  + +K  A L +LV L+L        GL +LK L  LE++   W     ITD+ +K 
Sbjct: 86  PILDRDLKELADLTSLVNLNLSDTRITDRGLFHLKRLTNLETV---WLQNTSITDAGIKE 142

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L+    L  L +S +++TD G+  L   Q LT L L+   +T   L +L  L ++  L+L
Sbjct: 143 LASFERLAELNLSDTRITDRGLRELSDFQNLTTLWLQNVEMTDDGLQALKRLKTITTLDL 202

Query: 139 ------NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
                 N  +++D+G E+ S +  L+ L L    I D  L  L+ L +L  L+L    I 
Sbjct: 203 SNLNGLNTIRITDEGLEQLSDLPELRHLYLANIPIADSGLTSLRRLKHLTVLDLRGTQIT 262

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           DEGL  L GL  L+  +L+ TQ+  +GL  L GL NL ++ +    I+   L++L  L  
Sbjct: 263 DEGLNELRGLHELETFKLTKTQISDAGLTALKGLKNLTTLLIGSNQITGTGLQELTNLDQ 322

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           LK+L+L   Q+TD  L  L+S+  LT L L    ITD G   LR  K LR L + G  +T
Sbjct: 323 LKTLDLSDTQVTDVELNRLSSIRTLTDLRLSDTPITDVGLRSLRELKRLRRLTLGGTQIT 382

Query: 313 D-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
           D + + H++DL+ L L    +   +TD  L  +  L  L SLN+  +++T A L  LK L
Sbjct: 383 DISELNHLRDLTHLDL----RVTPITDTGLHGLGDLKHLTSLNLDATQVTDASLSELKCL 438

Query: 372 KNLRSLTLESCKVTANDIKRLQ 393
            +L+ L+L    ++    K L+
Sbjct: 439 VHLKELSLSRTAISGLGFKSLE 460



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 139/469 (29%), Positives = 211/469 (44%), Gaps = 80/469 (17%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L+ L++L +L+   +  IT +G+     L NL  + L+  +    G+  L    +L  
Sbjct: 93  KELADLTSLVNLNLS-DTRITDRGLFHLKRLTNLETVWLQNTSITDAGIKELASFERLAE 151

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG------ 116
           LN+     ITD  ++ LS   NL +L +   ++TD G+  LK L+ +T L+L        
Sbjct: 152 LNLSDTR-ITDRGLRELSDFQNLTTLWLQNVEMTDDGLQALKRLKTITTLDLSNLNGLNT 210

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +T   L+ LS L  L +L L    ++D G     ++  L VL+L   +ITDE L  L+
Sbjct: 211 IRITDEGLEQLSDLPELRHLYLANIPIADSGLTSLRRLKHLTVLDLRGTQITDEGLNELR 270

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
           GL  LE+  L    I D GL  L GL NL  L +   Q+  +GL+ L+ L  L++++LS 
Sbjct: 271 GLHELETFKLTKTQISDAGLTALKGLKNLTTLLIGSNQITGTGLQELTNLDQLKTLDLSD 330

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTG----------------------LAALTSL 274
           T ++D  L +L+ + +L  L L    ITD G                      ++ L  L
Sbjct: 331 TQVTDVELNRLSSIRTLTDLRLSDTPITDVGLRSLRELKRLRRLTLGGTQITDISELNHL 390

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-------------------- 314
             LTHLDL    ITD+G   L + K+L SL +    +TDA                    
Sbjct: 391 RDLTHLDLRVTPITDTGLHGLGDLKHLTSLNLDATQVTDASLSELKCLVHLKELSLSRTA 450

Query: 315 ----GVKHIKDLSSLTLLN----------LSQNCNL-------------TDKTLELISGL 347
               G K ++ L  LT+L           L + C L             TD  L  +  L
Sbjct: 451 ISGLGFKSLERLEQLTVLRCDRCLIADEGLREICTLKSLKTLVISGTRVTDDGLAELHQL 510

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA---NDIKRLQ 393
            GL  L + N+ +T AG+  L  L  LR+L +   K+T    +DIKRL+
Sbjct: 511 EGLQELRIENNALTDAGMSELMVLGKLRTLGISHNKITDTSLSDIKRLK 559



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 127/437 (29%), Positives = 196/437 (44%), Gaps = 53/437 (12%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-----ITD 73
           +  IT +G++  +   NL  L L+       GL  LK L  + +L++   N      ITD
Sbjct: 156 DTRITDRGLRELSDFQNLTTLWLQNVEMTDDGLQALKRLKTITTLDLSNLNGLNTIRITD 215

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
             ++ LS L  L+ L ++   + DSG+  L+ L+ LT+L+L G  +T   L+ L  L  L
Sbjct: 216 EGLEQLSDLPELRHLYLANIPIADSGLTSLRRLKHLTVLDLRGTQITDEGLNELRGLHEL 275

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
               L + Q+SD G      + +L  L +G N+IT   L  L  L  L++L+L    + D
Sbjct: 276 ETFKLTKTQISDAGLTALKGLKNLTTLLIGSNQITGTGLQELTNLDQLKTLDLSDTQVTD 335

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSG----------------------LRHLSGLTNLES 231
             L  L+ +  L  L LSDT +   G                      +  L+ L +L  
Sbjct: 336 VELNRLSSIRTLTDLRLSDTPITDVGLRSLRELKRLRRLTLGGTQITDISELNHLRDLTH 395

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-------FG 284
           ++L  T I+D  L  L  L  L SLNLDA Q+TD  L+ L  L  L  L L        G
Sbjct: 396 LDLRVTPITDTGLHGLGDLKHLTSLNLDATQVTDASLSELKCLVHLKELSLSRTAISGLG 455

Query: 285 AR-----------------ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
            +                 I D G   +   K+L++L I G  +TD G+  +  L  L  
Sbjct: 456 FKSLERLEQLTVLRCDRCLIADEGLREICTLKSLKTLVISGTRVTDDGLAELHQLEGLQE 515

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387
           L +  N  LTD  +  +  L  L +L +S+++IT   L  +K LKNL  L + + ++T +
Sbjct: 516 LRIENNA-LTDAGMSELMVLGKLRTLGISHNKITDTSLSDIKRLKNLTMLRIRNTEITDS 574

Query: 388 DIKRLQSRDLPNLVSFR 404
            +   +    PN+  FR
Sbjct: 575 GLNGFKDAR-PNVSIFR 590



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 145/286 (50%), Gaps = 7/286 (2%)

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
           E    +   L  L     L  L+L+   + D   ++ + + SL  LNL    ITD  L H
Sbjct: 59  EAHKFSEKHLHLLKPFSDLSDLDLHAIPILDRDLKELADLTSLVNLNLSDTRITDRGLFH 118

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           LK LTNLE++ L +  I D G+  L     L  L LSDT++   GLR LS   NL ++ L
Sbjct: 119 LKRLTNLETVWLQNTSITDAGIKELASFERLAELNLSDTRITDRGLRELSDFQNLTTLWL 178

Query: 235 SFTGISDGSLRKLAGLSSLKSLN------LDARQITDTGLAALTSLTGLTHLDLFGARIT 288
               ++D  L+ L  L ++ +L+      L+  +ITD GL  L+ L  L HL L    I 
Sbjct: 179 QNVEMTDDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQLSDLPELRHLYLANIPIA 238

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
           DSG   LR  K+L  L++ G  +TD G+  ++ L  L    L++   ++D  L  + GL 
Sbjct: 239 DSGLTSLRRLKHLTVLDLRGTQITDEGLNELRGLHELETFKLTK-TQISDAGLTALKGLK 297

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
            L +L + +++IT  GL+ L  L  L++L L   +VT  ++ RL S
Sbjct: 298 NLTTLLIGSNQITGTGLQELTNLDQLKTLDLSDTQVTDVELNRLSS 343



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 174/370 (47%), Gaps = 31/370 (8%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E LS L  L  L +  N  I   G+ +   L +L  LDL        GL  L+GL +LE+
Sbjct: 219 EQLSDLPELRHL-YLANIPIADSGLTSLRRLKHLTVLDLRGTQITDEGLNELRGLHELET 277

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
             +     I+D+ +  L GL NL +L I  +++T +G+  L  L +L  L+L    VT  
Sbjct: 278 FKLTKTQ-ISDAGLTALKGLKNLTTLLIGSNQITGTGLQELTNLDQLKTLDLSDTQVTDV 336

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDG----------------------CEKFSKIGSLKVL 160
            L+ LS++ +L  L L+   ++D G                        + + +  L  L
Sbjct: 337 ELNRLSSIRTLTDLRLSDTPITDVGLRSLRELKRLRRLTLGGTQITDISELNHLRDLTHL 396

Query: 161 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
           +L    ITD  L  L  L +L SLNLD+  + D  L  L  L +LK L LS T +   G 
Sbjct: 397 DLRVTPITDTGLHGLGDLKHLTSLNLDATQVTDASLSELKCLVHLKELSLSRTAISGLGF 456

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           + L  L  L  +      I+D  LR++  L SLK+L +   ++TD GLA L  L GL  L
Sbjct: 457 KSLERLEQLTVLRCDRCLIADEGLREICTLKSLKTLVISGTRVTDDGLAELHQLEGLQEL 516

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
            +    +TD+G + L     LR+L I    +TD  +  IK L +LT+L + +N  +TD  
Sbjct: 517 RIENNALTDAGMSELMVLGKLRTLGISHNKITDTSLSDIKRLKNLTMLRI-RNTEITD-- 573

Query: 341 LELISGLTGL 350
               SGL G 
Sbjct: 574 ----SGLNGF 579



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 149/298 (50%), Gaps = 20/298 (6%)

Query: 118 PVTAACLDSLSALGSLFYLNLNRCQ-----LSDDGCEKFSK--------IGSLKVLNLGF 164
           P  +  +  L  LG+L   +          ++ +   KFS+           L  L+L  
Sbjct: 25  PDVSKAVQKLELLGALIERDAEAPDHPVIGIAFEEAHKFSEKHLHLLKPFSDLSDLDLHA 84

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
             I D  L  L  LT+L +LNL    I D GL +L  L NL+ + L +T +  +G++ L+
Sbjct: 85  IPILDRDLKELADLTSLVNLNLSDTRITDRGLFHLKRLTNLETVWLQNTSITDAGIKELA 144

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
               L  +NLS T I+D  LR+L+   +L +L L   ++TD GL AL  L  +T LDL  
Sbjct: 145 SFERLAELNLSDTRITDRGLRELSDFQNLTTLWLQNVEMTDDGLQALKRLKTITTLDLSN 204

Query: 285 ------ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
                  RITD G   L +   LR L +    + D+G+  ++ L  LT+L+L +   +TD
Sbjct: 205 LNGLNTIRITDEGLEQLSDLPELRHLYLANIPIADSGLTSLRRLKHLTVLDL-RGTQITD 263

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 396
           + L  + GL  L +  ++ ++I+ AGL  LK LKNL +L + S ++T   ++ L + D
Sbjct: 264 EGLNELRGLHELETFKLTKTQISDAGLTALKGLKNLTTLLIGSNQITGTGLQELTNLD 321


>gi|46447250|ref|YP_008615.1| hypothetical protein pc1616 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400891|emb|CAF24340.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 813

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 138/389 (35%), Positives = 202/389 (51%), Gaps = 46/389 (11%)

Query: 2   TENLSG--LSNLTSLSFRRN------NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 52
           +ENL+G  L++LT L   R+        +T  G+     L+ L  LDL  C  +   GLV
Sbjct: 438 SENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSECKNLTDDGLV 497

Query: 53  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-----CSKVTDSGIAYLKGLQ 107
           +L  L+ L+ L++K C  +TD+ +  L+ LT L+ L +      C  +TD G+A+L  L 
Sbjct: 498 HLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLT 557

Query: 108 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 165
            L  L+L     +T A L  L+ L +L +L+L+ C+ L+D+G    + + +L+ L+L  +
Sbjct: 558 ALKHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLVALQYLSLKGS 617

Query: 166 EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 223
           +ITDE L HL  L+ L  L+L+ C  I   GL +LT L NL+ L+LS    + S  L +L
Sbjct: 618 DITDEGLEHLAHLSALRHLSLNDCRRINGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYL 677

Query: 224 SGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL--TH 279
           S L NL+ +NLS   G+    L  L  L +L+ L+L     +TD GLA LTSL GL   H
Sbjct: 678 SSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLTDQGLAYLTSLVGLDLQH 737

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           LDL G +                        +TD G+ H+  L +L  LNLS+  NLTD 
Sbjct: 738 LDLSGCK-----------------------KITDTGLAHLTSLVTLQHLNLSECVNLTDT 774

Query: 340 TLELISGLTGLVSLNVSNSR-ITSAGLRH 367
            L  +  L  L  L +   + IT AGL H
Sbjct: 775 GLAHLVSLVNLQYLELRECKNITDAGLAH 803



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 184/348 (52%), Gaps = 14/348 (4%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 107
              + LK    L+ L +K      D+ +  L+ LT L+ L +S C  + D+G+A+L  L 
Sbjct: 344 AHFLALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQHLDLSECYLLKDTGLAHLSSLT 403

Query: 108 KLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-F 164
            L  L+L +    T A L  L+ L SL +L+L++ + L+ DG    + + +L+ L L   
Sbjct: 404 ALQYLDLSDSGNFTDAGLAHLTPLVSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDC 463

Query: 165 NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRH 222
             +TD  L HL  L  L  L+L  C  + D+GLV+L+ L  L+ L L   + +  +GL H
Sbjct: 464 RNLTDAGLAHLTPLVALRHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAH 523

Query: 223 LSGLTNLESINLSF-----TGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTG 276
           L+ LT LE ++L         ++D  L  L+ L++LK L+L  R+ +TD GLA LT LT 
Sbjct: 524 LTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLTA 583

Query: 277 LTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
           L HLDL +   +TD G AYL     L+ L + G  +TD G++H+  LS+L  L+L+    
Sbjct: 584 LRHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRR 643

Query: 336 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 382
           +    L  ++ L  L  L++S    + S  L +L  L NL+ L L  C
Sbjct: 644 INGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYLSSLVNLQHLNLSEC 691



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 189/383 (49%), Gaps = 47/383 (12%)

Query: 16  FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 75
           ++ NN I        +GL+N     +    +I     N     ++E LN+   +  T++ 
Sbjct: 292 YQLNNLINYLEFTVVSGLLNNTS-HVNEFEKILNHFSN-----EIEGLNLSGKDFFTEAH 345

Query: 76  MKPLSGLTNLKSLQISCSKV----TDSGIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSAL 130
                 L N K+L++ C K+     D+G+A+L  L  L  L+L  C +     L  LS+L
Sbjct: 346 FL---ALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQHLDLSECYLLKDTGLAHLSSL 402

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD-SC 189
            +L YL+L     SD G                    TD  L HL  L +L+ L+L  S 
Sbjct: 403 TALQYLDL-----SDSG------------------NFTDAGLAHLTPLVSLQHLDLSKSE 439

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 247
            +  +GL +LT L  L+ L LSD + +  +GL HL+ L  L  ++LS    ++D  L  L
Sbjct: 440 NLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSECKNLTDDGLVHL 499

Query: 248 AGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL---FG--ARITDSGAAYLRNFKNL 301
           + L +L+ L+L     +TD GLA LT LT L HLDL    G    +TD G A+L +   L
Sbjct: 500 SSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLTAL 559

Query: 302 RSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           + L++     LTDAG+ H+  L++L  L+LS   NLTD+ L  ++ L  L  L++  S I
Sbjct: 560 KHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDI 619

Query: 361 TSAGLRHLKPLKNLRSLTLESCK 383
           T  GL HL  L  LR L+L  C+
Sbjct: 620 TDEGLEHLAHLSALRHLSLNDCR 642



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/127 (44%), Positives = 75/127 (59%), Gaps = 3/127 (2%)

Query: 265 DTGLAALTSLTGLTHLDLFGARI-TDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDL 322
           DTGLA LTSLT L HLDL    +  D+G A+L +   L+ L++   G  TDAG+ H+  L
Sbjct: 368 DTGLAHLTSLTALQHLDLSECYLLKDTGLAHLSSLTALQYLDLSDSGNFTDAGLAHLTPL 427

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLES 381
            SL  L+LS++ NLT   L  ++ L  L  L +S+ R +T AGL HL PL  LR L L  
Sbjct: 428 VSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSE 487

Query: 382 CKVTAND 388
           CK   +D
Sbjct: 488 CKNLTDD 494


>gi|168701031|ref|ZP_02733308.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 389

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 144/289 (49%), Gaps = 23/289 (7%)

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
           T A L  LS    L  LNL   Q++D   +  ++   L VLN+ + +ITDE L  + GLT
Sbjct: 55  TDAGLKELSLFAGLTNLNLTNTQVTDAALKDVARFPKLTVLNVSYTQITDEGLREIAGLT 114

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            L  L LD   +   GL +L  L  L+ L L    V  +GLR L G+  L  ++L  T +
Sbjct: 115 ELTDLVLDYTKVSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRETSV 174

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           +D  L+++A LS LK+L L    +T  GL  L  LT L  L L G RIT  G + L   K
Sbjct: 175 TDAGLKEIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGDGLSELTGLK 234

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ-----------------------NCNL 336
           +LR LE+ G  LTDAG+K +    +L  L LS                        +  +
Sbjct: 235 SLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKI 294

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           TD  L+ I+ LT L  L + ++ +T AG+R+L PL  LR L L   KVT
Sbjct: 295 TDADLKEIAALTNLTGLTMRDTPVTDAGVRNLAPLTKLRRLNLTHTKVT 343



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 175/337 (51%), Gaps = 2/337 (0%)

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           +++      TD+ +K LS    L +L ++ ++VTD+ +  +    KLT+LN+    +T  
Sbjct: 46  VDLSGAKTFTDAGLKELSLFAGLTNLNLTNTQVTDAALKDVARFPKLTVLNVSYTQITDE 105

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L  ++ L  L  L L+  ++S  G +  + +  L+ L+LG   +TD  L  L G+  L 
Sbjct: 106 GLREIAGLTELTDLVLDYTKVSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLR 165

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L+L    + D GL  +  L  LK L L +  V   GL+ L+ LT L+ + LS T I+  
Sbjct: 166 QLDLRETSVTDAGLKEIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGD 225

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L +L GL SL+ L L    +TD GL  L     L HL L   ++T +G   L   K L 
Sbjct: 226 GLSELTGLKSLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLS 285

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            L++    +TDA +K I  L++LT L + ++  +TD  +  ++ LT L  LN++++++T+
Sbjct: 286 GLDLGSTKITDADLKEIAALTNLTGLTM-RDTPVTDAGVRNLAPLTKLRRLNLTHTKVTN 344

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
           A  + L   K+L S+ L    VT    K L++  LPN
Sbjct: 345 ACAKTLATFKHLTSVDLHQTDVTEEGGKELKAA-LPN 380



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 156/307 (50%), Gaps = 10/307 (3%)

Query: 30  FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 89
           FAGL NL   +L         L ++    KL  LN+ +   ITD  ++ ++GLT L  L 
Sbjct: 65  FAGLTNL---NLTNTQVTDAALKDVARFPKLTVLNVSYTQ-ITDEGLREIAGLTELTDLV 120

Query: 90  ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 149
           +  +KV+ SG+ +L  L KL  L+L    VT A L  L  +  L  L+L    ++D G +
Sbjct: 121 LDYTKVSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRETSVTDAGLK 180

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 209
           + + +  LK L L    +T   L  L  LT L+ L L    I  +GL  LTGL +L+ LE
Sbjct: 181 EIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGDGLSELTGLKSLRLLE 240

Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL- 268
           L  T +  +GL+ L+G   L  + LS T ++   L++LA L  L  L+L + +ITD  L 
Sbjct: 241 LGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKITDADLK 300

Query: 269 --AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
             AALT+LTGLT  D     +TD+G   L     LR L +    +T+A  K +     LT
Sbjct: 301 EIAALTNLTGLTMRD---TPVTDAGVRNLAPLTKLRRLNLTHTKVTNACAKTLATFKHLT 357

Query: 327 LLNLSQN 333
            ++L Q 
Sbjct: 358 SVDLHQT 364



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 162/318 (50%), Gaps = 2/318 (0%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + LS  + LT+L+   N  +T   +K  A    L  L++        GL  + GL +L  
Sbjct: 60  KELSLFAGLTNLNLT-NTQVTDAALKDVARFPKLTVLNVSYTQITDEGLREIAGLTELTD 118

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L + +   ++ S +K L+ LT L++L +    VTD+G+  L G++ L  L+L    VT A
Sbjct: 119 LVLDYTK-VSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRETSVTDA 177

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L  ++ L  L  L L    ++  G +  + +  L+ L L    IT + L  L GL +L 
Sbjct: 178 GLKEIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGDGLSELTGLKSLR 237

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L L    + D GL  L G   L  L LS+T+V  +GL+ L+ L  L  ++L  T I+D 
Sbjct: 238 LLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKITDA 297

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L+++A L++L  L +    +TD G+  L  LT L  L+L   ++T++ A  L  FK+L 
Sbjct: 298 DLKEIAALTNLTGLTMRDTPVTDAGVRNLAPLTKLRRLNLTHTKVTNACAKTLATFKHLT 357

Query: 303 SLEICGGGLTDAGVKHIK 320
           S+++    +T+ G K +K
Sbjct: 358 SVDLHQTDVTEEGGKELK 375


>gi|290997932|ref|XP_002681535.1| predicted protein [Naegleria gruberi]
 gi|284095159|gb|EFC48791.1| predicted protein [Naegleria gruberi]
          Length = 448

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 170/324 (52%), Gaps = 1/324 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I D   K +S +  L SL I  S++   G  ++  +++LT L++ G  +       +S
Sbjct: 12  NQIGDEGAKSISEMKQLTSLDICYSRIGAEGAKFISEMKQLTSLDIGGNEIGDEGSKYIS 71

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            +  L  LN++  ++ D+G +  S++  L  L++  NEI  E    +  +  L SL++  
Sbjct: 72  EMKQLTSLNIDNNRIGDEGAKSISEMKQLTSLSINNNEIGVEGAKSISEMKQLTSLDISG 131

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
            GIGD+G+  ++ +  LK L++   ++G  G +++S +  L S+N+    I D  ++ ++
Sbjct: 132 NGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGENRIGDEGVKSIS 191

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
            +  L SL++   +I D G  +++ +  LT LD+ G  I D G   +   K L SL+I G
Sbjct: 192 EMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLDISG 251

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
            G+ D G K I ++  L LL++  N  + D+  + IS +  L SLN+ N+ I   G++ +
Sbjct: 252 NGIGDEGAKFISEMKQLKLLDIGGN-EIGDEGSKYISEMKQLTSLNIYNNEIGVEGVKSI 310

Query: 369 KPLKNLRSLTLESCKVTANDIKRL 392
             +K L SL + + ++    +K +
Sbjct: 311 SEMKQLTSLYIYNNQIGVEGVKSI 334



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 200/409 (48%), Gaps = 34/409 (8%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERC-TRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 77
           N I  +G K+ + +  L  LD+  C +RI   G   +  + +L SL+I   N I D   K
Sbjct: 12  NQIGDEGAKSISEMKQLTSLDI--CYSRIGAEGAKFISEMKQLTSLDI-GGNEIGDEGSK 68

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
            +S +  L SL I  +++ D G   +  +++LT L++    +      S+S +  L  L+
Sbjct: 69  YISEMKQLTSLNIDNNRIGDEGAKSISEMKQLTSLSINNNEIGVEGAKSISEMKQLTSLD 128

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           ++   + D G +  S++  LK+L++G NEI DE   ++  +  L SLN+    IGDEG+ 
Sbjct: 129 ISGNGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGENRIGDEGVK 188

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
           +++ +  L  L + + ++G  G + +S +  L S+++S  GI D  ++ ++ +  L SL+
Sbjct: 189 SISEMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLD 248

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
           +    I D G   ++ +  L  LD+ G  I D G+ Y+   K L SL I    +   GVK
Sbjct: 249 ISGNGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIGVEGVK 308

Query: 318 HIKDLSSLTLLNLSQNC-----------------------NLTDKTLELISGLTGLVSLN 354
            I ++  LT L +  N                         + DK ++ IS +  L+SLN
Sbjct: 309 SISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISEMKQLISLN 368

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSRDL 397
           +  + I   G++ +  +K L SL +   ++ A      +++K+L S D+
Sbjct: 369 IGGNGIGDEGVKSISEMKQLTSLNISKNRIGAEGSKFISEMKQLTSLDI 417



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 195/375 (52%), Gaps = 3/375 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S +  LTSL+   NN I  +G K+ + +  L  L +        G  ++  + +L SL+
Sbjct: 70  ISEMKQLTSLNID-NNRIGDEGAKSISEMKQLTSLSINNNEIGVEGAKSISEMKQLTSLD 128

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I D  +K +S +  LK L I  +++ D G  Y+  +++LT LN+    +    +
Sbjct: 129 ISG-NGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGENRIGDEGV 187

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            S+S +  L  L++   ++ D+G +  S++  L  L++  N I D+ +  +  +  L SL
Sbjct: 188 KSISEMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSL 247

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           ++   GIGDEG   ++ +  LK L++   ++G  G +++S +  L S+N+    I    +
Sbjct: 248 DISGNGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIGVEGV 307

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + ++ +  L SL +   QI   G+ +++ +  L  L++    I D G  ++   K L SL
Sbjct: 308 KSISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISEMKQLISL 367

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
            I G G+ D GVK I ++  LT LN+S+N  +  +  + IS +  L SL++  + I   G
Sbjct: 368 NIGGNGIGDEGVKSISEMKQLTSLNISKN-RIGAEGSKFISEMKQLTSLDICYNEIGGEG 426

Query: 365 LRHLKPLKNLRSLTL 379
           ++ +  +K L+SL++
Sbjct: 427 VKSISEMKQLKSLSI 441



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 181/353 (51%), Gaps = 26/353 (7%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE------------------R 43
            +++S +  LTSLS   NN I  +G K+ + +  L  LD+                   +
Sbjct: 91  AKSISEMKQLTSLSIN-NNEIGVEGAKSISEMKQLTSLDISGNGIGDKGVKFISEMKQLK 149

Query: 44  CTRIHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 97
              I G  +  +G      + +L SLNI   N I D  +K +S +  L SL I  +++ D
Sbjct: 150 LLDIGGNEIGDEGSKYISEMKQLTSLNI-GENRIGDEGVKSISEMKQLTSLSIYNNRIGD 208

Query: 98  SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
            G   +  +++LT L++ G  +    + S+S +  L  L+++   + D+G +  S++  L
Sbjct: 209 EGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLDISGNGIGDEGAKFISEMKQL 268

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
           K+L++G NEI DE   ++  +  L SLN+ +  IG EG+ +++ +  L  L + + Q+G 
Sbjct: 269 KLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIGVEGVKSISEMKQLTSLYIYNNQIGV 328

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
            G++ +S +  L+S+N+ +  I D  ++ ++ +  L SLN+    I D G+ +++ +  L
Sbjct: 329 EGVKSISEMKQLKSLNICYNEIGDKGVKFISEMKQLISLNIGGNGIGDEGVKSISEMKQL 388

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
           T L++   RI   G+ ++   K L SL+IC   +   GVK I ++  L  L++
Sbjct: 389 TSLNISKNRIGAEGSKFISEMKQLTSLDICYNEIGGEGVKSISEMKQLKSLSI 441



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 139/259 (53%), Gaps = 2/259 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S +  LTSLS   NN I  +G K+ + +  L  LD+        G+ ++  + +L SL+
Sbjct: 190 ISEMKQLTSLSIY-NNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLD 248

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I D   K +S +  LK L I  +++ D G  Y+  +++LT LN+    +    +
Sbjct: 249 ISG-NGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIGVEGV 307

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            S+S +  L  L +   Q+  +G +  S++  LK LN+ +NEI D+ +  +  +  L SL
Sbjct: 308 KSISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISEMKQLISL 367

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           N+   GIGDEG+ +++ +  L  L +S  ++G+ G + +S +  L S+++ +  I    +
Sbjct: 368 NIGGNGIGDEGVKSISEMKQLTSLNISKNRIGAEGSKFISEMKQLTSLDICYNEIGGEGV 427

Query: 245 RKLAGLSSLKSLNLDARQI 263
           + ++ +  LKSL++  +Q+
Sbjct: 428 KSISEMKQLKSLSIHNQQM 446


>gi|46447552|ref|YP_008917.1| hypothetical protein pc1918 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401193|emb|CAF24642.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 552

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 182/333 (54%), Gaps = 32/333 (9%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           ++E+LN      +TD+ +  L    NLK L + +C  +TD G+A+L  L  L  LNL GC
Sbjct: 194 EIEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGC 253

Query: 118 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 176
                                   +L+D G      + +L+ L+L +   + D  LVHLK
Sbjct: 254 -----------------------YKLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLK 290

Query: 177 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 234
            LT L++L L SC  + D GL +L  L  L+ L+LS  +    +GL HL  LT L++++L
Sbjct: 291 PLTALQNLALTSCKNLTDRGLSHLKSLTALQTLDLSYCKNFKDAGLAHLPPLTALQTLDL 350

Query: 235 SF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSG 291
           S+   ++D  L  L  L++L++LNL   +++ D GLA L  LT L +L L   + +TD G
Sbjct: 351 SYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDAGLAHLKPLTALQYLALNSCKNLTDRG 410

Query: 292 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
            ++L++   L+ L + G   LTDAG+ H+K L++L  L L +  NLT   L  ++ LT L
Sbjct: 411 LSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLTALQTLGLRRCQNLTGDGLAHLAPLTAL 470

Query: 351 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 382
            +L++S   ++  AGL HLKPL  L++L L+ C
Sbjct: 471 QTLDLSYCKKLKDAGLAHLKPLTALQTLGLKWC 503



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 173/341 (50%), Gaps = 38/341 (11%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKW 67
            NL  L      AIT  G+   A L  L  L+L  C ++   GLV+LK L  L++L++ +
Sbjct: 218 ENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGLVHLKSLTALQTLDLSY 277

Query: 68  CNCITDS---DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           C  + D+    +KPL+ L NL     SC  +TD G+++LK L  L  L+L  C       
Sbjct: 278 CKNLKDAGLVHLKPLTALQNLA--LTSCKNLTDRGLSHLKSLTALQTLDLSYCK------ 329

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLES 183
                               D G      + +L+ L+L +  ++TD  L HLK LT L++
Sbjct: 330 -----------------NFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQT 372

Query: 184 LNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGIS 240
           LNL  C  + D GL +L  L  L+ L L+  + +   GL HL  L  L+ + LS    ++
Sbjct: 373 LNLSYCKKLKDAGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLT 432

Query: 241 DGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNF 298
           D  L  L  L++L++L L   Q +T  GLA L  LT L  LDL +  ++ D+G A+L+  
Sbjct: 433 DAGLAHLKPLTALQTLGLRRCQNLTGDGLAHLAPLTALQTLDLSYCKKLKDAGLAHLKPL 492

Query: 299 KNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
             L++  L+ C   LTDAG+ H+K L++L  L+LS   NLT
Sbjct: 493 TALQTLGLKWC-SNLTDAGLAHLKPLAALQHLDLSYCNNLT 532



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 163/300 (54%), Gaps = 33/300 (11%)

Query: 93  SKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 150
           + +TD+ +  LK  + L +L+LE C  +T   L  L+ L +L +LNLN C +L+D G   
Sbjct: 204 AHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGLVH 263

Query: 151 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCL 208
              + +L+ L+L +   + D  LVHLK LT L++L L SC  + D GL +L  L  L+ L
Sbjct: 264 LKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTL 323

Query: 209 ELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITD 265
           +LS  +    +GL HL  LT L++++LS+   ++D  L  L  L++L++LNL   +++ D
Sbjct: 324 DLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKD 383

Query: 266 TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS 323
            GLA L  LT L +L L   + +TD G ++L++   L+ L + G   LTDAG+ H+K L+
Sbjct: 384 AGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLT 443

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           +L  L L +  NLT                          GL HL PL  L++L L  CK
Sbjct: 444 ALQTLGLRRCQNLTGD------------------------GLAHLAPLTALQTLDLSYCK 479



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 96/253 (37%), Positives = 141/253 (55%), Gaps = 8/253 (3%)

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 196
           N   L+D          +LKVL+L     ITD+ L HL  LT L+ LNL+ C  + D GL
Sbjct: 202 NNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGL 261

Query: 197 VNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 254
           V+L  L  L+ L+LS  + +  +GL HL  LT L+++ L S   ++D  L  L  L++L+
Sbjct: 262 VHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQ 321

Query: 255 SLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGL 311
           +L+L   +   D GLA L  LT L  LDL +   +TD G ++L++   L++L +     L
Sbjct: 322 TLDLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKL 381

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKP 370
            DAG+ H+K L++L  L L+   NLTD+ L  +  L  L  L +S    +T AGL HLKP
Sbjct: 382 KDAGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKP 441

Query: 371 LKNLRSLTLESCK 383
           L  L++L L  C+
Sbjct: 442 LTALQTLGLRRCQ 454



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 34/245 (13%)

Query: 150 KFSKI-----GSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 202
           +F KI       ++ LN   N  +TD  L+ LK   NL+ L+L++C  I D+GL +L  L
Sbjct: 183 EFEKIINHFSNEIEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPL 242

Query: 203 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 260
             L+ L L+   ++  +GL HL  LT L++++LS+   + D  L  L  L++L++L L +
Sbjct: 243 TALQHLNLNGCYKLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTS 302

Query: 261 -RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
            + +TD GL+ L SLT L  LDL          +Y +NFK             DAG+ H+
Sbjct: 303 CKNLTDRGLSHLKSLTALQTLDL----------SYCKNFK-------------DAGLAHL 339

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 378
             L++L  L+LS   +LTD+ L  +  LT L +LN+S   ++  AGL HLKPL  L+ L 
Sbjct: 340 PPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDAGLAHLKPLTALQYLA 399

Query: 379 LESCK 383
           L SCK
Sbjct: 400 LNSCK 404



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLES 62
           +L  L+ L +L  RR   +T  G+   A L  L  LDL  C ++   GL +LK L  L++
Sbjct: 438 HLKPLTALQTLGLRRCQNLTGDGLAHLAPLTALQTLDLSYCKKLKDAGLAHLKPLTALQT 497

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGL 106
           L +KWC+ +TD+ +  L  L  L+ L +S C+ +T +G+A  K L
Sbjct: 498 LGLKWCSNLTDAGLAHLKPLAALQHLDLSYCNNLTRAGLANFKIL 542


>gi|325110089|ref|YP_004271157.1| hypothetical protein Plabr_3538 [Planctomyces brasiliensis DSM
           5305]
 gi|324970357|gb|ADY61135.1| leucine-rich repeat-containing protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 451

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 170/318 (53%), Gaps = 2/318 (0%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
            T+ GM    GL +L  L LE+      GLV +  +  L +L ++  + ++D  +K L G
Sbjct: 119 FTSAGMSDLQGLNDLRLLSLEKTLIDDAGLVEIGRIPSLVALRLRQTD-VSDEGLKALGG 177

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           L  L+ L +  + ++D G+  L  L  ++ + L+   ++   + +L+A+ ++  L LN  
Sbjct: 178 LDKLRELDLRFTNISDEGLPALAELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNLT 237

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            L++   E   +   L  L +   +I D  +VHL+G++NL++L+L    +GDEG   +  
Sbjct: 238 NLTNTALEALKERSELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGK 297

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L +LK L + DT +  +G  HL+ L NLE+++L+ T I D  +  L GL +LK+L L   
Sbjct: 298 LKSLKRLSIRDTVISDAGCAHLANLENLETLDLNETFIGDEGVAHLGGLKNLKTLELWFT 357

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           +IT  G A L +LT L  L+L   RI DS    L     LR+L +    +TD G+ H+  
Sbjct: 358 RITPQGTAPLQNLTALRELNLEDTRIDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHG 417

Query: 322 LSSLTLLNLSQNCNLTDK 339
           L +L  ++L  N  ++D+
Sbjct: 418 LKNLEFVHLG-NTQVSDE 434



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 157/290 (54%), Gaps = 4/290 (1%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIK 66
           + +L +L  R+ + ++ +G+KA  GL  L +LDL R T I   GL  L  L  + ++ + 
Sbjct: 154 IPSLVALRLRQTD-VSDEGLKALGGLDKLRELDL-RFTNISDEGLPALAELDSISTVKLD 211

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
               I+D  +K L+ +  ++ L ++ + +T++ +  LK   +L  L ++   +  A +  
Sbjct: 212 RTK-ISDEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLEMDDTQIDDAGIVH 270

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           L  + +L  L+L R  + D+G E   K+ SLK L++    I+D    HL  L NLE+L+L
Sbjct: 271 LEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGCAHLANLENLETLDL 330

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
           +   IGDEG+ +L GL NLK LEL  T++   G   L  LT L  +NL  T I D +L  
Sbjct: 331 NETFIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALRELNLEDTRIDDSALEP 390

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
           LAGL+ L++LNL    ITD GL  L  L  L  + L   +++D G   L+
Sbjct: 391 LAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHLGNTQVSDEGTDALK 440



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 170/337 (50%), Gaps = 25/337 (7%)

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           D  +  L+G   ++ L +     T +G++ L+GL  L LL+LE   +  A L  +  + S
Sbjct: 97  DDALTHLTGTPQVQELYLFGPGFTSAGMSDLQGLNDLRLLSLEKTLIDDAGLVEIGRIPS 156

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L L +  +SD+G +    +  L+ L+L F  I+DE L  L  L ++ ++ LD   I 
Sbjct: 157 LVALRLRQTDVSDEGLKALGGLDKLRELDLRFTNISDEGLPALAELDSISTVKLDRTKIS 216

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           DEG+  L  +  ++ L L+ T + ++ L  L   + L ++ +  T I D  +  L G+S+
Sbjct: 217 DEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLEMDDTQIDDAGIVHLEGMSN 276

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L++L+L    + D G   +  L  L  L +    I+D+G A+L N +NL +L++    + 
Sbjct: 277 LQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGCAHLANLENLETLDLNETFIG 336

Query: 313 DAGVKH------------------------IKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
           D GV H                        +++L++L  LNL ++  + D  LE ++GLT
Sbjct: 337 DEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALRELNL-EDTRIDDSALEPLAGLT 395

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
            L +LN+  + IT  GL HL  LKNL  + L + +V+
Sbjct: 396 ELRTLNLKLTPITDEGLVHLHGLKNLEFVHLGNTQVS 432



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 151/301 (50%), Gaps = 1/301 (0%)

Query: 84  NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 143
           N+ ++     +  D  + +L G  ++  L L G   T+A +  L  L  L  L+L +  +
Sbjct: 84  NVTAVDFRSVEAADDALTHLTGTPQVQELYLFGPGFTSAGMSDLQGLNDLRLLSLEKTLI 143

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
            D G  +  +I SL  L L   +++DE L  L GL  L  L+L    I DEGL  L  L 
Sbjct: 144 DDAGLVEIGRIPSLVALRLRQTDVSDEGLKALGGLDKLRELDLRFTNISDEGLPALAELD 203

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           ++  ++L  T++   G++ L+ +  +  + L+ T +++ +L  L   S L +L +D  QI
Sbjct: 204 SISTVKLDRTKISDEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLEMDDTQI 263

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
            D G+  L  ++ L +L L    + D G   +   K+L+ L I    ++DAG  H+ +L 
Sbjct: 264 DDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGCAHLANLE 323

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           +L  L+L++   + D+ +  + GL  L +L +  +RIT  G   L+ L  LR L LE  +
Sbjct: 324 NLETLDLNETF-IGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALRELNLEDTR 382

Query: 384 V 384
           +
Sbjct: 383 I 383



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 11/275 (4%)

Query: 115 EGCPVT-AACLDSLSALGSLFYLN---------LNRCQLSDDGCEKFSKIGSLKVLNLGF 164
           E  P   +A +++L A G++   N             + +DD     +    ++ L L  
Sbjct: 57  ESTPADDSAAVEALEAAGAILKTNAQGNVTAVDFRSVEAADDALTHLTGTPQVQELYLFG 116

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
              T   +  L+GL +L  L+L+   I D GLV +  + +L  L L  T V   GL+ L 
Sbjct: 117 PGFTSAGMSDLQGLNDLRLLSLEKTLIDDAGLVEIGRIPSLVALRLRQTDVSDEGLKALG 176

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
           GL  L  ++L FT ISD  L  LA L S+ ++ LD  +I+D G+  L ++  +  L L  
Sbjct: 177 GLDKLRELDLRFTNISDEGLPALAELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNL 236

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             +T++    L+    L +LE+    + DAG+ H++ +S+L  L+L ++ ++ D+  E+I
Sbjct: 237 TNLTNTALEALKERSELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRD-DVGDEGFEII 295

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             L  L  L++ ++ I+ AG  HL  L+NL +L L
Sbjct: 296 GKLKSLKRLSIRDTVISDAGCAHLANLENLETLDL 330



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 26/192 (13%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +L G+SNL +LS RR++ +  +G +    L +L +L +        G  +L  L  LE+L
Sbjct: 270 HLEGMSNLQNLSLRRDD-VGDEGFEIIGKLKSLKRLSIRDTVISDAGCAHLANLENLETL 328

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           ++     I D  +  L GL NLK+L++  +++T  G A L+ L  L  LNLE   +  + 
Sbjct: 329 DLNET-FIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALRELNLEDTRIDDSA 387

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L+ L+ L  L  LNL                            ITDE LVHL GL NLE 
Sbjct: 388 LEPLAGLTELRTLNLK------------------------LTPITDEGLVHLHGLKNLEF 423

Query: 184 LNLDSCGIGDEG 195
           ++L +  + DEG
Sbjct: 424 VHLGNTQVSDEG 435



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 2/126 (1%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +L+ L NL +L       I  +G+    GL NL  L+L        G   L+ L  L  L
Sbjct: 318 HLANLENLETLDLNET-FIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALREL 376

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           N++    I DS ++PL+GLT L++L +  + +TD G+ +L GL+ L  ++L    V+   
Sbjct: 377 NLEDTR-IDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHLGNTQVSDEG 435

Query: 124 LDSLSA 129
            D+L A
Sbjct: 436 TDALKA 441


>gi|290982526|ref|XP_002673981.1| predicted protein [Naegleria gruberi]
 gi|284087568|gb|EFC41237.1| predicted protein [Naegleria gruberi]
          Length = 363

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 195/371 (52%), Gaps = 11/371 (2%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIK 66
           +  LTSL+   NN I+ +G K  + +  L  L++    RI G G   +  + +L SLNI 
Sbjct: 1   MKQLTSLNVS-NNQISGKGAKYISEMKQLTSLNISN-NRIGGKGAKYISEMKQLTSLNI- 57

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
           + N I+D   K +S +  L SL IS +++   G  ++  +++LT LN+    ++      
Sbjct: 58  FNNRISDEGAKYISEMKQLISLDISYNQIGAEGAKFISEMKQLTSLNISYNEISDEGAKY 117

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           +S +  L  LN++   +S+ G +  S++  L  LN+  N+I+ +   ++  +  L SLN+
Sbjct: 118 ISEMKQLTSLNISYNDISE-GAKPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNI 176

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
               I  +G   +  +  L  L++S+ Q+   G + LS +  L S+N+S   IS    + 
Sbjct: 177 SDNQISGKGAKYIGEMKQLTSLDISNNQISDEGAKFLSEMKQLISLNVSNNQISGKEAKF 236

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           ++ +  L SLN+   QI+D     ++ +  LT LD+F   I+D GA Y+   K+L SL+I
Sbjct: 237 MSEMKQLTSLNISNNQISDERAKYISEMKQLTSLDIFNNLISDEGAKYISEMKHLTSLDI 296

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
               ++     HI ++  LT LN+S N  + D+  + IS +  L SL++S +RI   G +
Sbjct: 297 SYNEIS-----HISEMKQLTSLNISFN-QINDEGAKSISEMKQLTSLDMSYNRIGGEGAK 350

Query: 367 HLKPLKNLRSL 377
           ++  +K+L SL
Sbjct: 351 YISEMKHLTSL 361



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 149/270 (55%), Gaps = 8/270 (2%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           LN++  Q+S  G +  S++  L  LN+  N I  +   ++  +  L SLN+ +  I DEG
Sbjct: 7   LNVSNNQISGKGAKYISEMKQLTSLNISNNRIGGKGAKYISEMKQLTSLNIFNNRISDEG 66

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
              ++ +  L  L++S  Q+G+ G + +S +  L S+N+S+  ISD   + ++ +  L S
Sbjct: 67  AKYISEMKQLISLDISYNQIGAEGAKFISEMKQLTSLNISYNEISDEGAKYISEMKQLTS 126

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           LN+    I++ G   ++ +  LT L++   +I+  GA Y+   K L SL I    ++  G
Sbjct: 127 LNISYNDISE-GAKPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISDNQISGKG 185

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
            K+I ++  LT L++S N  ++D+  + +S +  L+SLNVSN++I+    + +  +K L 
Sbjct: 186 AKYIGEMKQLTSLDIS-NNQISDEGAKFLSEMKQLISLNVSNNQISGKEAKFMSEMKQLT 244

Query: 376 SLTLESCKVT------ANDIKRLQSRDLPN 399
           SL + + +++       +++K+L S D+ N
Sbjct: 245 SLNISNNQISDERAKYISEMKQLTSLDIFN 274



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 107/204 (52%), Gaps = 8/204 (3%)

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           +  L  L +S+ Q+   G +++S +  L S+N+S   I     + ++ +  L SLN+   
Sbjct: 1   MKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISNNRIGGKGAKYISEMKQLTSLNIFNN 60

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           +I+D G   ++ +  L  LD+   +I   GA ++   K L SL I    ++D G K+I +
Sbjct: 61  RISDEGAKYISEMKQLISLDISYNQIGAEGAKFISEMKQLTSLNISYNEISDEGAKYISE 120

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           +  LT LN+S   N   +  + IS +  L SLNVSN++I+  G +++  +K L SL +  
Sbjct: 121 MKQLTSLNIS--YNDISEGAKPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISD 178

Query: 382 CKVTAN------DIKRLQSRDLPN 399
            +++        ++K+L S D+ N
Sbjct: 179 NQISGKGAKYIGEMKQLTSLDISN 202


>gi|46446626|ref|YP_007991.1| hypothetical protein pc0992 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400267|emb|CAF23716.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 583

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 180/348 (51%), Gaps = 34/348 (9%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 69
           + +L F  N  +T   + A     NL  L LE C  I   GL +L  L+ L+ L++  C 
Sbjct: 228 IEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDCE 287

Query: 70  CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLS 128
            +TD  +  L+ LT L+ L +     TD+G+A+L  L  L  LNL  C   T A L  L+
Sbjct: 288 NLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHLT 347

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLD 187
            L +L +L+L  C L+D G    + +  L+ L+L G  ++TD  L HL+ LT L+ LNL+
Sbjct: 348 PLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNLN 407

Query: 188 SC-GIGDEGLVNLTGLCNLKCLELSD--------------------------TQVGSSGL 220
            C  + D GL +LT L  L+ L+LS                            ++  +GL
Sbjct: 408 WCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAGL 467

Query: 221 RHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLT 278
            HL+ LT L+ +NL+ +  ++D  L  L  L+ L+ L L D + +TD GLA LT LT L 
Sbjct: 468 AHLTLLTGLQHLNLNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTALQ 527

Query: 279 HLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
           HL+L G  ++TD+G A+L +   L+ L++     LTD G+   K L++
Sbjct: 528 HLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRFKTLAT 575



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 127/346 (36%), Positives = 192/346 (55%), Gaps = 10/346 (2%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           ++E+L+      +TD+ +  L    NLK L + +C  +TD G+A+L  L  L  L+L  C
Sbjct: 227 EIEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDC 286

Query: 118 P-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL 175
             +T   L  L+ L +L +L+L  C  +D G    + + +L+ LNL F +  TD  L HL
Sbjct: 287 ENLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHL 346

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 234
             LT L+ L+L  C + D GL +LT L  L+ L+L   + +  +GL HL  LT L+ +NL
Sbjct: 347 TPLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNL 406

Query: 235 SF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-ARITDSG 291
           ++   ++D  L  L  L++L+ L+L     ITD GLA LT LT L HL+L G  ++TD+G
Sbjct: 407 NWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAG 466

Query: 292 AAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
            A+L     L+ L +     LTDAG+ H+  L+ L  L L+   NLTD  L  ++ LT L
Sbjct: 467 LAHLTLLTGLQHLNLNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTAL 526

Query: 351 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 394
             LN+S   ++T AGL HL  L  L+ L L  C  +T + + R ++
Sbjct: 527 QHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRFKT 572



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 113/311 (36%), Positives = 168/311 (54%), Gaps = 8/311 (2%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +L+ L  L  L       +T  G+     L  L  LDL  C     GL +L  L  L+ L
Sbjct: 271 HLAPLVALQHLDLSDCENLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAHLTPLTALQHL 330

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAA 122
           N+ +C+  TD+ +  L+ LT L+ L +    +TD+G+A+L  L  L  L+L GC  +T A
Sbjct: 331 NLSFCSNATDAGLAHLTPLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDA 390

Query: 123 CLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 180
            L  L  L +L +LNLN C+ L+D G    + + +L+ L+L F + ITD+ L HL  LT 
Sbjct: 391 GLAHLRPLTALQHLNLNWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTT 450

Query: 181 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FT 237
           L+ LNL  C  + D GL +LT L  L+ L L+  + +  +GL HL+ L  L+ + L+   
Sbjct: 451 LQHLNLSGCYKLTDAGLAHLTLLTGLQHLNLNWYKNLTDAGLAHLTPLAGLQYLALTDCK 510

Query: 238 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 295
            ++D  L  L  L++L+ LNL    ++TD GLA LTSLT L +LDL +   +TD G    
Sbjct: 511 NLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRF 570

Query: 296 RNFKNLRSLEI 306
           +      +LEI
Sbjct: 571 KTLATSLNLEI 581


>gi|108763744|ref|YP_632240.1| leucine-rich repeat-containing protein [Myxococcus xanthus DK 1622]
 gi|108467624|gb|ABF92809.1| leucine-rich repeat domain protein [Myxococcus xanthus DK 1622]
          Length = 624

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 188/396 (47%), Gaps = 12/396 (3%)

Query: 4   NLSGLSNLTSLSFRRNNA--ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           +L+ L N T L     NA  +T  G+     +  L  L L+       GL +L     L 
Sbjct: 154 HLASLENATQLEALHLNATRVTNVGLAPLKRMRRLAVLRLDETPVSDAGLASLSEHTTLR 213

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            + +     ++   +  L+    L+ L +S + V D+ +A L G   L  LNL G  VT 
Sbjct: 214 RVTLA-GTAVSPQGLGFLARQPGLEELDLSDTAVDDTVLAVLPG-APLHTLNLSGTKVTN 271

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           A L  LSA+ SL  L L R   SD      + +  L+ L+LG  ++TD  L+HL  L  L
Sbjct: 272 AGLRGLSAMPSLRRLGLARTAASDASLLHITGLRELEALHLGSTQVTDAGLLHLAKLPAL 331

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            +L L    I   GL +L GL  L+ L L DT VG S LRHL GL  L  ++LS T I+ 
Sbjct: 332 RALVLSKARIRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELRELDLSRTAITG 391

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             L++L+ L +L+SL L    +TD  L AL  L+ LT L L    I      +L +   L
Sbjct: 392 TGLQELSTLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEALNHLGSRPLL 451

Query: 302 RSLEICGGGLTDAGVKHIKD----LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
           R L++   G TD  V  I+     L SL     ++   LTD  L   +  T L +++V+ 
Sbjct: 452 RHLDLSKTGFTDEWVPSIRQAFPGLHSLK----AERTLLTDAGLGQFAEWTELEAIHVAG 507

Query: 358 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
           + I  +GL  L  L  L +L L + ++ +   K LQ
Sbjct: 508 TLINGSGLTRLHTLARLTTLDLGATRLDSEGQKALQ 543



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 176/362 (48%), Gaps = 6/362 (1%)

Query: 34  INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 93
           +  + L+  R T +  GL  LK + +L  L +     ++D+ +  LS  T L+ + ++ +
Sbjct: 164 LEALHLNATRVTNV--GLAPLKRMRRLAVLRLD-ETPVSDAGLASLSEHTTLRRVTLAGT 220

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
            V+  G+ +L     L  L+L    V    L  L     L  LNL+  ++++ G    S 
Sbjct: 221 AVSPQGLGFLARQPGLEELDLSDTAVDDTVLAVLPG-APLHTLNLSGTKVTNAGLRGLSA 279

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
           + SL+ L L     +D  L+H+ GL  LE+L+L S  + D GL++L  L  L+ L LS  
Sbjct: 280 MPSLRRLGLARTAASDASLLHITGLRELEALHLGSTQVTDAGLLHLAKLPALRALVLSKA 339

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
           ++  +GLRHL+GL+ LE+++L  T + D +LR L GL+ L+ L+L    IT TGL  L++
Sbjct: 340 RIRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELRELDLSRTAITGTGLQELST 399

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           L  L  L L G  +TD     L     L  L +    +    + H+     L  L+LS+ 
Sbjct: 400 LVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEALNHLGSRPLLRHLDLSK- 458

Query: 334 CNLTDKTLELI-SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
              TD+ +  I     GL SL    + +T AGL        L ++ +    +  + + RL
Sbjct: 459 TGFTDEWVPSIRQAFPGLHSLKAERTLLTDAGLGQFAEWTELEAIHVAGTLINGSGLTRL 518

Query: 393 QS 394
            +
Sbjct: 519 HT 520



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 169/365 (46%), Gaps = 29/365 (7%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           +T  G++  + + +L +L L R       L+++ GL +LE+L++     +TD+ +  L+ 
Sbjct: 269 VTNAGLRGLSAMPSLRRLGLARTAASDASLLHITGLRELEALHLG-STQVTDAGLLHLAK 327

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           L  L++L +S +++  +G+ +L GL +L  L+L+   V  + L  L  L  L  L+L+R 
Sbjct: 328 LPALRALVLSKARIRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELRELDLSRT 387

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            ++  G ++ S + +L+ L L    +TD+ L  L  L+ L  L L    IG E L +L  
Sbjct: 388 AITGTGLQELSTLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEALNHLGS 447

Query: 202 LCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
              L+ L+LS T      +  +      L S+    T ++D  L + A  + L+++++  
Sbjct: 448 RPLLRHLDLSKTGFTDEWVPSIRQAFPGLHSLKAERTLLTDAGLGQFAEWTELEAIHVAG 507

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
             I  +GL  L +L  LT LDL   R+   G   L+ F  L  L + G    D  + H+ 
Sbjct: 508 TLINGSGLTRLHTLARLTTLDLGATRLDSEGQKALQGFTKLVWLSVAGVRTGDEMLGHLP 567

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
                                        L +L ++ +++T AGL  L  L +LR L L 
Sbjct: 568 R---------------------------SLRTLYLTRTKVTDAGLPALHKLPHLRELDLR 600

Query: 381 SCKVT 385
              V+
Sbjct: 601 GTAVS 605



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 140/309 (45%), Gaps = 24/309 (7%)

Query: 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
           L + G     A L SL     L  L+LN  ++++ G     ++  L VL L    ++D  
Sbjct: 143 LQVSGTDFGNAHLASLENATQLEALHLNATRVTNVGLAPLKRMRRLAVLRLDETPVSDAG 202

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD------------------- 212
           L  L   T L  + L    +  +GL  L     L+ L+LSD                   
Sbjct: 203 LASLSEHTTLRRVTLAGTAVSPQGLGFLARQPGLEELDLSDTAVDDTVLAVLPGAPLHTL 262

Query: 213 ----TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
               T+V ++GLR LS + +L  + L+ T  SD SL  + GL  L++L+L + Q+TD GL
Sbjct: 263 NLSGTKVTNAGLRGLSAMPSLRRLGLARTAASDASLLHITGLRELEALHLGSTQVTDAGL 322

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
             L  L  L  L L  ARI  +G  +L     L +L +    + D+ ++H++ L+ L  L
Sbjct: 323 LHLAKLPALRALVLSKARIRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELREL 382

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           +LS+   +T   L+ +S L  L SL +S   +T   L  L PL  L  L L    +    
Sbjct: 383 DLSRTA-ITGTGLQELSTLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEA 441

Query: 389 IKRLQSRDL 397
           +  L SR L
Sbjct: 442 LNHLGSRPL 450



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 142/300 (47%), Gaps = 14/300 (4%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +L+ L  L +L   +   I   G++  AGL  L  L L+        L +L+GL +L  L
Sbjct: 324 HLAKLPALRALVLSKAR-IRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELREL 382

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           ++     IT + ++ LS L  L+SL +S   +TD  +  L  L +LT L L   P+    
Sbjct: 383 DLS-RTAITGTGLQELSTLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEA 441

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
           L+ L +   L +L+L++   +D+      + F  + SLK        +TD  L      T
Sbjct: 442 LNHLGSRPLLRHLDLSKTGFTDEWVPSIRQAFPGLHSLKAER---TLLTDAGLGQFAEWT 498

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            LE++++    I   GL  L  L  L  L+L  T++ S G + L G T L  + LS  G+
Sbjct: 499 ELEAIHVAGTLINGSGLTRLHTLARLTTLDLGATRLDSEGQKALQGFTKL--VWLSVAGV 556

Query: 240 SDGSLRKLAGLS-SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI-TDSGAAYLRN 297
             G    L  L  SL++L L   ++TD GL AL  L  L  LDL G  + T++ +A  R 
Sbjct: 557 RTGD-EMLGHLPRSLRTLYLTRTKVTDAGLPALHKLPHLRELDLRGTAVSTEARSALARE 615



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 4/158 (2%)

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           ++ +S T   +  L  L   + L++L+L+A ++T+ GLA L  +  L  L L    ++D+
Sbjct: 142 ALQVSGTDFGNAHLASLENATQLEALHLNATRVTNVGLAPLKRMRRLAVLRLDETPVSDA 201

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
           G A L     LR + + G  ++  G+  +     L  L+LS +  + D  L ++ G   L
Sbjct: 202 GLASLSEHTTLRRVTLAGTAVSPQGLGFLARQPGLEELDLS-DTAVDDTVLAVLPG-APL 259

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
            +LN+S +++T+AGLR L  + +LR L L   +  A+D
Sbjct: 260 HTLNLSGTKVTNAGLRGLSAMPSLRRLGL--ARTAASD 295


>gi|290970571|ref|XP_002668179.1| predicted protein [Naegleria gruberi]
 gi|284081412|gb|EFC35435.1| predicted protein [Naegleria gruberi]
          Length = 592

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 207/410 (50%), Gaps = 31/410 (7%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG--LVNLKGLMK 59
            +++SG+ +LTSL     N I  +G+K+ + +  L+ LD+   T + GG     +  + +
Sbjct: 174 AKSISGMKHLTSLDIS-GNRIGDEGVKSISEMEQLISLDI--STNVIGGEGAKFISEMKQ 230

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L SL+I + N I     K +S +  L SL IS +++   G   +  +++LT LN+ G  +
Sbjct: 231 LTSLDI-FYNRIGGEGAKLISEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLI 289

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
               + S+S +  L  LN++   + D+G +  S++  L  L++  N I DE +  +  + 
Sbjct: 290 GVEGVKSISGMKQLTSLNISGNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMK 349

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            L S ++ +  I DEG  +++G+  L  L +S+ ++G  G++ +S +  L S+N+S   I
Sbjct: 350 QLTSFDISNNLIYDEGAKSISGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKNEI 409

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD---------- 289
                + ++G+  L SL +    I D G+ +++ +  LT LD+   RI D          
Sbjct: 410 DGEGAKFISGMKQLTSLTIYKNGIGDEGVKSISEMKQLTSLDISNNRIGDEGVKSISEME 469

Query: 290 --------------SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
                          GA ++   K L SL+I G  + D GVK I ++  LT LN+S N  
Sbjct: 470 QLISLDISTNVIGGEGAKFISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLNISGN-Q 528

Query: 336 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           +  +  + IS +  L SL++S + I  AG + +  +K L SL + + +++
Sbjct: 529 IGVEGAKFISEMKQLTSLDISKNEIGDAGAKFISEMKQLTSLDVYANRIS 578



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 194/402 (48%), Gaps = 24/402 (5%)

Query: 17  RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK----------------GLMKL 60
           +  + +  Q  K FA    L +++L R ++    +VN+K                G+ +L
Sbjct: 80  KERSKLVIQFKKKFA----LKRIELFRKSQFMNCIVNVKFSSWTLDAFEQPKFISGMKQL 135

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            S++I   N I     K +S +  L SL IS + +   G   + G++ LT L++ G  + 
Sbjct: 136 TSVDIS-GNRIGIEGAKSISEMKQLTSLNISNNIIGVEGAKSISGMKHLTSLDISGNRIG 194

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
              + S+S +  L  L+++   +  +G +  S++  L  L++ +N I  E    +  +  
Sbjct: 195 DEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSLDIFYNRIGGEGAKLISEMKQ 254

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L SLN+ +  I  EG   ++ +  L  L +S   +G  G++ +SG+  L S+N+S   I 
Sbjct: 255 LTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTSLNISGNLIG 314

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           D   + ++ +  L SL++   +I D G+ +++ +  LT  D+    I D GA  +   K 
Sbjct: 315 DEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSISGMKQ 374

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L SL I    +   GVK I ++  LT LN+S+N  +  +  + ISG+  L SL +  + I
Sbjct: 375 LTSLTISNNRIGGEGVKFISEIKQLTSLNISKN-EIDGEGAKFISGMKQLTSLTIYKNGI 433

Query: 361 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
              G++ +  +K L SL + + ++    +K +   ++  L+S
Sbjct: 434 GDEGVKSISEMKQLTSLDISNNRIGDEGVKSI--SEMEQLIS 473



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 161/317 (50%), Gaps = 14/317 (4%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LM 58
           +S +  LTSL+    N I  +G+K+ +G+  L  L+      I G L+  +G      + 
Sbjct: 273 ISEMKQLTSLNIS-GNLIGVEGVKSISGMKQLTSLN------ISGNLIGDEGAKLISEMK 325

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           +L SL+I + N I D  +K +S +  L S  IS + + D G   + G+++LT L +    
Sbjct: 326 QLTSLDI-YNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSISGMKQLTSLTISNNR 384

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +    +  +S +  L  LN+++ ++  +G +  S +  L  L +  N I DE +  +  +
Sbjct: 385 IGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTIYKNGIGDEGVKSISEM 444

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
             L SL++ +  IGDEG+ +++ +  L  L++S   +G  G + +S +  L S+++S   
Sbjct: 445 KQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSLDISGNL 504

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           I D  ++ ++ +  L SLN+   QI   G   ++ +  LT LD+    I D+GA ++   
Sbjct: 505 IYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSLDISKNEIGDAGAKFISEM 564

Query: 299 KNLRSLEICGGGLTDAG 315
           K L SL++    ++D  
Sbjct: 565 KQLTSLDVYANRISDEA 581


>gi|290998894|ref|XP_002682015.1| predicted protein [Naegleria gruberi]
 gi|284095641|gb|EFC49271.1| predicted protein [Naegleria gruberi]
          Length = 413

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 161/317 (50%), Gaps = 27/317 (8%)

Query: 63  LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           +N+K    + DS   +K +S +  L SL I  +++   G+ Y+  +++LT LN+    ++
Sbjct: 111 VNLKVSRWLLDSVDQLKFISEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNISEIEIS 170

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
                 +S +  L  L ++  ++ D+G +  S++  L  LN+G NEI+DE   H+  +  
Sbjct: 171 DEGAKYISEMKQLTSLYIHNNEIGDEGSKHISEMKQLTSLNIGCNEISDEGAKHISEMNQ 230

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L SL++    IGDEG   ++ +  L  L+++D ++G  G +++S +  L S+N+ F    
Sbjct: 231 LISLSIGYNRIGDEGFKYISEMKQLTSLDITDDEIGDEGAKYISEMKQLTSLNIGFN--- 287

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
                                +I D G   ++ L  LT LD+    I+D GA Y+   K 
Sbjct: 288 ---------------------EIGDEGAKYISELKQLTSLDISETEISDEGAKYISEMKQ 326

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L  L I    ++D G K+I +L  LT L+++ N  + ++  + IS +  L+SLN+  +RI
Sbjct: 327 LIWLTIGYNEISDKGAKYISELKQLTSLDITDN-KIGNEGAKYISEMNQLISLNIGYNRI 385

Query: 361 TSAGLRHLKPLKNLRSL 377
              G +++  +K L SL
Sbjct: 386 GDEGAKYISEMKQLTSL 402



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 2/190 (1%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
            +++S ++ L SLS   N  I  +G K  + +  L  LD+        G   +  + +L 
Sbjct: 222 AKHISEMNQLISLSIGYN-RIGDEGFKYISEMKQLTSLDITDDEIGDEGAKYISEMKQLT 280

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           SLNI + N I D   K +S L  L SL IS ++++D G  Y+  +++L  L +    ++ 
Sbjct: 281 SLNIGF-NEIGDEGAKYISELKQLTSLDISETEISDEGAKYISEMKQLIWLTIGYNEISD 339

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
                +S L  L  L++   ++ ++G +  S++  L  LN+G+N I DE   ++  +  L
Sbjct: 340 KGAKYISELKQLTSLDITDNKIGNEGAKYISEMNQLISLNIGYNRIGDEGAKYISEMKQL 399

Query: 182 ESLNLDSCGI 191
            SL   S G 
Sbjct: 400 TSLRQISLGF 409



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 1/112 (0%)

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
           L  ++ +  LT LD++  RI   G  Y+   K L SL I    ++D G K+I ++  LT 
Sbjct: 126 LKFISEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNISEIEISDEGAKYISEMKQLTS 185

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           L +  N  + D+  + IS +  L SLN+  + I+  G +H+  +  L SL++
Sbjct: 186 LYI-HNNEIGDEGSKHISEMKQLTSLNIGCNEISDEGAKHISEMNQLISLSI 236


>gi|290973802|ref|XP_002669636.1| predicted protein [Naegleria gruberi]
 gi|284083186|gb|EFC36892.1| predicted protein [Naegleria gruberi]
          Length = 548

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 185/371 (49%), Gaps = 12/371 (3%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           + + LS L+NL  L+   +N I   G K  + L +L  LDL        G   L  L  L
Sbjct: 131 VVKGLSSLTNLKKLNLG-HNEIGNDGAKHVSSLTHLTALDLFDNGIGPNGAQRLSSLTNL 189

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             LN+   N I D+  + +S LTNL  L +  +K+  +G+  L+GL+KLT L+L G  + 
Sbjct: 190 TQLNL-GNNEIGDAGAEHISSLTNLTQLNLRITKLGANGVKSLRGLKKLTELDLSGNQIG 248

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
              +++LS L +L  LNL   +++ DG E+   + +L  L+L           HL  L N
Sbjct: 249 YEGVNNLSELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAE--------HLSQLKN 300

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  +NL    IG  G   L  L NL  L L    +G+     L  L NL  ++L +  I 
Sbjct: 301 LTQINLCLNQIGPNGAERLCELTNLTQLNLRSNLIGAIKAESLCKLENLTQLDLGYNRIE 360

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           D   ++L+ L  L  L+L   QI   G  +L+ LT LTHLDL G  I D GA +L   K 
Sbjct: 361 DDGAQRLSKLKKLTQLDLSGNQIGSIGAQSLSELTNLTHLDLNGNGIED-GAQHLSKLKK 419

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L  L +    + D G K++ +L+ LT L+L  N  + D   E +S L  +  L++ ++ I
Sbjct: 420 LTRLGLNDNRIGDDGAKYLSELNKLTHLSLDNN-GIGDTGAECLSKLKNITYLSLDDNEI 478

Query: 361 TSAGLRHLKPL 371
            +AG +HL+ L
Sbjct: 479 ETAGKKHLRKL 489



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 141/296 (47%), Gaps = 18/296 (6%)

Query: 106 LQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
           + K+  L ++G   +   C    + L +L  L+L R ++     +  S + +LK LNLG 
Sbjct: 89  MDKVLSLTIDGVELIEEQCGTISTKLVNLTQLDLCRNKIKPTVVKGLSSLTNLKKLNLGH 148

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           NEI ++   H+  LT+L +L+L   GIG  G   L+ L NL  L L + ++G +G  H+S
Sbjct: 149 NEIGNDGAKHVSSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQLNLGNNEIGDAGAEHIS 208

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
            LTNL  +NL  T +    ++ L GL  L  L+L   QI   G+  L+ L  L  L+L  
Sbjct: 209 SLTNLTQLNLRITKLGANGVKSLRGLKKLTELDLSGNQIGYEGVNNLSELKNLKKLNLGN 268

Query: 285 ARITDSG----------------AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
            RIT  G                A +L   KNL  + +C   +   G + + +L++LT L
Sbjct: 269 NRITGDGAERLCGLENLTELDLRAEHLSQLKNLTQINLCLNQIGPNGAERLCELTNLTQL 328

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           NL  N     K  E +  L  L  L++  +RI   G + L  LK L  L L   ++
Sbjct: 329 NLRSNLIGAIKA-ESLCKLENLTQLDLGYNRIEDDGAQRLSKLKKLTQLDLSGNQI 383



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 136/296 (45%), Gaps = 44/296 (14%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E++S L+NLT L+ R    + A G+K+  GL  L +LDL      + G+ NL  L  L+ 
Sbjct: 205 EHISSLTNLTQLNLRIT-KLGANGVKSLRGLKKLTELDLSGNQIGYEGVNNLSELKNLKK 263

Query: 63  LNI-----------KWCNC--ITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQ 107
           LN+           + C    +T+ D++   LS L NL  + +  +++  +G   L  L 
Sbjct: 264 LNLGNNRITGDGAERLCGLENLTELDLRAEHLSQLKNLTQINLCLNQIGPNGAERLCELT 323

Query: 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
            LT LNL    + A   +SL  L +L  L+L   ++ DDG ++ SK+  L  L+L  N+I
Sbjct: 324 NLTQLNLRSNLIGAIKAESLCKLENLTQLDLGYNRIEDDGAQRLSKLKKLTQLDLSGNQI 383

Query: 168 TDECLVHLKGLTNLESLNLDSCG-----------------------IGDEGLVNLTGLCN 204
                  L  LTNL  L+L+  G                       IGD+G   L+ L  
Sbjct: 384 GSIGAQSLSELTNLTHLDLNGNGIEDGAQHLSKLKKLTRLGLNDNRIGDDGAKYLSELNK 443

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG---SLRKLA--GLSSLKS 255
           L  L L +  +G +G   LS L N+  ++L    I       LRKL   GL S+++
Sbjct: 444 LTHLSLDNNGIGDTGAECLSKLKNITYLSLDDNEIETAGKKHLRKLIRCGLCSIRT 499


>gi|383455271|ref|YP_005369260.1| hypothetical protein COCOR_03284 [Corallococcus coralloides DSM
           2259]
 gi|380733131|gb|AFE09133.1| leucine-rich repeat-containing protein [Corallococcus coralloides
           DSM 2259]
          Length = 614

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 128/392 (32%), Positives = 190/392 (48%), Gaps = 6/392 (1%)

Query: 3   ENLSGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           E+L+ L+N T L         +T  G+ +  G+ +L  L L+       GL  L  L  L
Sbjct: 144 EHLAALANATRLQALHLDGTRVTDAGLASLQGMPHLAVLRLDATAVSDRGLALLASLTTL 203

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             L++     ++   +  L+  T L+ L +S + V D+ +A L G ++L  L + G  VT
Sbjct: 204 RRLSLS-GTSVSPRGLGLLAAQTELEWLDLSDTTVDDTVLASLPG-ERLRTLVMSGTHVT 261

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
            A L +L  + +L +L L R  +SD G      +  L  L+LG   +TD  L+HL  L  
Sbjct: 262 NAGLGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLGSTGVTDAGLIHLARLPA 321

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  L L    I   G+ +L GL  L+ L L DT +G++ LRHL GL +L  + LS T ++
Sbjct: 322 LRVLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHLQGLQHLRDLELSRTAVT 381

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
              L  L+GL +L+SL L    + D  LAAL  L  L+ LDL   RI       L +   
Sbjct: 382 GSGLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLSATRIGPEALKQLGSRMV 441

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           LR L++      D  V  ++  + L  L   +   LTD  L  +S L  L SL VS + I
Sbjct: 442 LRHLDLSRTDFNDGWVATLQTFTQLQSLRAIRTI-LTDLGLGQLSELRELESLQVSGNPI 500

Query: 361 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           + +GL  L+ L +L  L L    +T +D  RL
Sbjct: 501 SGSGLVPLQKLPHLVKLDLGGTWMT-DDGARL 531



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 174/382 (45%), Gaps = 50/382 (13%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE------------- 115
             + D  +  L+  T L++L +  ++VTD+G+A L+G+  L +L L+             
Sbjct: 139 TALGDEHLAALANATRLQALHLDGTRVTDAGLASLQGMPHLAVLRLDATAVSDRGLALLA 198

Query: 116 -----------GCPVTAACLDSLSALGSLFYLNLNRCQLSDD------------------ 146
                      G  V+   L  L+A   L +L+L+   + D                   
Sbjct: 199 SLTTLRRLSLSGTSVSPRGLGLLAAQTELEWLDLSDTTVDDTVLASLPGERLRTLVMSGT 258

Query: 147 -----GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
                G     ++ +L+ L L    ++D  L HL  L  L++L+L S G+ D GL++L  
Sbjct: 259 HVTNAGLGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLGSTGVTDAGLIHLAR 318

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L  L+ L LS T++   G+RHL+GLT LE ++L  T I + +LR L GL  L+ L L   
Sbjct: 319 LPALRVLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHLQGLQHLRDLELSRT 378

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
            +T +GL AL+ L  L  L L G  + D+  A L   + L  L++    +    +K +  
Sbjct: 379 AVTGSGLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLSATRIGPEALKQLGS 438

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
              L  L+LS+  +  D  +  +   T L SL    + +T  GL  L  L+ L SL +  
Sbjct: 439 RMVLRHLDLSRT-DFNDGWVATLQTFTQLQSLRAIRTILTDLGLGQLSELRELESLQVSG 497

Query: 382 CKVTANDIKRLQSRDLPNLVSF 403
             ++ + +  LQ   LP+LV  
Sbjct: 498 NPISGSGLVPLQK--LPHLVKL 517



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 138/261 (52%), Gaps = 2/261 (0%)

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           S+  L+L+   L D+     +    L+ L+L    +TD  L  L+G+ +L  L LD+  +
Sbjct: 130 SVVSLHLSETALGDEHLAALANATRLQALHLDGTRVTDAGLASLQGMPHLAVLRLDATAV 189

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D GL  L  L  L+ L LS T V   GL  L+  T LE ++LS T + D  L  L G  
Sbjct: 190 SDRGLALLASLTTLRRLSLSGTSVSPRGLGLLAAQTELEWLDLSDTTVDDTVLASLPG-E 248

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L++L +    +T+ GL AL  +  L  L L    ++D+G A+L   + L +L +   G+
Sbjct: 249 RLRTLVMSGTHVTNAGLGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLGSTGV 308

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
           TDAG+ H+  L +L +L LS+   +    +  ++GLT L  L++ ++ I +A LRHL+ L
Sbjct: 309 TDAGLIHLARLPALRVLVLSKT-RIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHLQGL 367

Query: 372 KNLRSLTLESCKVTANDIKRL 392
           ++LR L L    VT + +  L
Sbjct: 368 QHLRDLELSRTAVTGSGLPAL 388



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 153/313 (48%), Gaps = 2/313 (0%)

Query: 83  TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 142
           T++ SL +S + + D  +A L    +L  L+L+G  VT A L SL  +  L  L L+   
Sbjct: 129 TSVVSLHLSETALGDEHLAALANATRLQALHLDGTRVTDAGLASLQGMPHLAVLRLDATA 188

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           +SD G    + + +L+ L+L    ++   L  L   T LE L+L    + D  L +L G 
Sbjct: 189 VSDRGLALLASLTTLRRLSLSGTSVSPRGLGLLAAQTELEWLDLSDTTVDDTVLASLPG- 247

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
             L+ L +S T V ++GL  L  +  L  + L+ T +SD  L  L  L  L +L+L +  
Sbjct: 248 ERLRTLVMSGTHVTNAGLGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLGSTG 307

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
           +TD GL  L  L  L  L L   RI   G  +L     L  L +    + +A ++H++ L
Sbjct: 308 VTDAGLIHLARLPALRVLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHLQGL 367

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
             L  L LS+   +T   L  +SGL  L SL +S   +  A L  L+PL+ L  L L + 
Sbjct: 368 QHLRDLELSRTA-VTGSGLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLSAT 426

Query: 383 KVTANDIKRLQSR 395
           ++    +K+L SR
Sbjct: 427 RIGPEALKQLGSR 439



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 163/342 (47%), Gaps = 4/342 (1%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           +T  G+ A   +  L  L L R +    GL +L  L  L++L++     +TD+ +  L+ 
Sbjct: 260 VTNAGLGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLG-STGVTDAGLIHLAR 318

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           L  L+ L +S +++   G+ +L GL +L +L+L+   +  A L  L  L  L  L L+R 
Sbjct: 319 LPALRVLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHLQGLQHLRDLELSRT 378

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            ++  G    S + +L+ L L    + D  L  L+ L  L  L+L +  IG E L  L  
Sbjct: 379 AVTGSGLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLSATRIGPEALKQLGS 438

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
              L+ L+LS T      +  L   T L+S+    T ++D  L +L+ L  L+SL +   
Sbjct: 439 RMVLRHLDLSRTDFNDGWVATLQTFTQLQSLRAIRTILTDLGLGQLSELRELESLQVSGN 498

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
            I+ +GL  L  L  L  LDL G  +TD GA  L  F+ L  L + G  + D  + H+  
Sbjct: 499 PISGSGLVPLQKLPHLVKLDLGGTWMTDDGARLLAGFEKLSWLSLAGTRIGDESLVHLPG 558

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
            S LTL  L     +TD  +  +  L  L  +++  + ++ A
Sbjct: 559 -SLLTLYLL--RTKVTDAGMPALHRLPLLREIDLRETAVSEA 597


>gi|46447141|ref|YP_008506.1| hypothetical protein pc1507 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400782|emb|CAF24231.1| hypothetical protein pc1507 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 623

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 195/355 (54%), Gaps = 11/355 (3%)

Query: 13  SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCI 71
           +L+F  N  +T   + A     NL  L L++C  +   GL +L  L+ L+ L +  C  +
Sbjct: 269 ALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHLSPLVALQHLELSDCPRL 328

Query: 72  TDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSA 129
           TD+ +  L+ L  L+ L +S CS  TD+G+A+L  L  LT LNL  C   T A L  L+ 
Sbjct: 329 TDAGLAHLTSLVALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSWCYNFTHAGLAHLTP 388

Query: 130 LGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLD 187
           L +L +LNL  C+ ++D G    S + +L+ LNLG+ + +TD  L HL  L  L+ L+L 
Sbjct: 389 LVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLAHLSPLVALQHLDLG 448

Query: 188 SCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSL 244
            C  + D GL +LT L  L+ L+LS    +  +GL HLS L  L+ ++LS    + D  L
Sbjct: 449 WCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQHLDLSNCLSLKDAGL 508

Query: 245 RKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLR 302
             L  L +LK LNL+    +TD GLA LT L  L HLDL     +T +G A+L +   L+
Sbjct: 509 AHLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSLMALQ 568

Query: 303 SLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
            L++     LTDAG+ H+  L +L  LNL++   LTD  L  ++ L  L  L++S
Sbjct: 569 HLDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCPKLTDAGLAHLAPLVALEHLDLS 623



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/337 (37%), Positives = 180/337 (53%), Gaps = 13/337 (3%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 117
           ++E+LN      +TD+ +  L    NLK L +  C  +TD+G+++L  L  L  L L  C
Sbjct: 266 EVEALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHLSPLVALQHLELSDC 325

Query: 118 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 174
           P +T A L  L++L +L YLNL+ C   +D G    + + +L  LNL +    T   L H
Sbjct: 326 PRLTDAGLAHLTSLVALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSWCYNFTHAGLAH 385

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 232
           L  L  L+ LNL  C  I D GL +L+ L  L+ L L   + +  +GL HLS L  L+ +
Sbjct: 386 LTPLVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLAHLSPLVALQHL 445

Query: 233 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITD 289
           +L + + ++D  L  L  L +L+ L+L     +TD GLA L+ L  L HLDL     + D
Sbjct: 446 DLGWCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQHLDLSNCLSLKD 505

Query: 290 SGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           +G A+L     L+ L +  C   LTDAG+ H+  L +L  L+LSQ  NLT   L  ++ L
Sbjct: 506 AGLAHLTLLVTLKYLNLNKCHN-LTDAGLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSL 564

Query: 348 TGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
             L  L++S    +T AGL HL PL NLR L L  C 
Sbjct: 565 MALQHLDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCP 601



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 2/113 (1%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLES 62
           +L+ L  L  L+  + + +T  G+     L+ L  LDL +C  + G GL +L  LM L+ 
Sbjct: 510 HLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSLMALQH 569

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL 114
           L++ WC+ +TD+ +  L+ L NL+ L ++ C K+TD+G+A+L  L  L  L+L
Sbjct: 570 LDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCPKLTDAGLAHLAPLVALEHLDL 622


>gi|46446776|ref|YP_008141.1| hypothetical protein pc1142 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400417|emb|CAF23866.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 590

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 197/364 (54%), Gaps = 14/364 (3%)

Query: 5   LSGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           ++ LSN + +L+F  N  +T   + A     N+  L  ++C  +   GL +L  L  L+ 
Sbjct: 220 INHLSNKIEALNFLENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQH 279

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           L +  C  +TD+ +  L+ LT L+ L +S C  +TDSG+ +L  L  L  L L  C  +T
Sbjct: 280 LGLSDCENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLT 339

Query: 121 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKG 177
            A L  L++L +L +L+L  C  L+D G    + + +L+ L+L   +N +TD  L HL  
Sbjct: 340 VAGLAHLTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYN-LTDAGLAHLTP 398

Query: 178 LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 235
           LT L+ LNL  C  + D GL +LT L  L+ L+LS    +  +GL HL+ LT L  +NLS
Sbjct: 399 LTALQHLNLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLS 458

Query: 236 FTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGA 292
               ++   L  L  L +L+ LNL     +TD GL  L  LT L HL+L +  + TD+G 
Sbjct: 459 ECWKLTGAGLAHLTPLVALQHLNLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGL 518

Query: 293 AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
           A+L     L+SL++ G   LTDAG+ H+  L++L  L+L    NLTD  LE    L  L 
Sbjct: 519 AHLTLLTALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIGCKNLTDAGLERFKTLAALP 578

Query: 352 SLNV 355
           +L +
Sbjct: 579 NLTI 582



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 185/379 (48%), Gaps = 59/379 (15%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 117
           K+E+LN      +T++ +  L    N+K L    C  VTD+G+A+L  L  L  L L  C
Sbjct: 226 KIEALNFLENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDC 285

Query: 118 P-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +T A L  L+ L +L +L+L+ C                         +TD  LVHL 
Sbjct: 286 ENLTDAGLAHLTTLTALQHLDLSGCW-----------------------NLTDSGLVHLT 322

Query: 177 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 234
            L  L+ L L  C  +   GL +LT L  L+ L+L +   +  +GL HL+ LT L+ ++L
Sbjct: 323 PLVGLQHLGLSDCENLTVAGLAHLTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDL 382

Query: 235 SF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSG 291
           S    ++D  L  L  L++L+ LNL   R++TD GLA LT LT L HLDL +   +TD+G
Sbjct: 383 SCCYNLTDAGLAHLTPLTALQHLNLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAG 442

Query: 292 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
            A+L     L  L +     LT AG+ H+  L +L  LNLS+  NLTD  L  ++ LT L
Sbjct: 443 LAHLTPLTALLHLNLSECWKLTGAGLAHLTPLVALQHLNLSKCNNLTDAGLVHLAPLTAL 502

Query: 351 VSLNVSNSR--------------------------ITSAGLRHLKPLKNLRSLTLESCK- 383
             LN+S  +                          +T AGL HL PL  L+ L L  CK 
Sbjct: 503 QHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIGCKN 562

Query: 384 VTANDIKRLQS-RDLPNLV 401
           +T   ++R ++   LPNL 
Sbjct: 563 LTDAGLERFKTLAALPNLT 581



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 3/133 (2%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L+ L+ L  L+      +T  G+     L+ L  L+L +C  +   GLV+L  L  L+ 
Sbjct: 445 HLTPLTALLHLNLSECWKLTGAGLAHLTPLVALQHLNLSKCNNLTDAGLVHLAPLTALQH 504

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           LN+ WC   TD+ +  L+ LT L+SL  I C+ +TD+G+ +L  L  L  L+L GC  +T
Sbjct: 505 LNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIGCKNLT 564

Query: 121 AACLDSLSALGSL 133
            A L+    L +L
Sbjct: 565 DAGLERFKTLAAL 577


>gi|297803756|ref|XP_002869762.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315598|gb|EFH46021.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 590

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 135/438 (30%), Positives = 212/438 (48%), Gaps = 63/438 (14%)

Query: 14  LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCIT 72
           +  R  ++I A+ M    G +NLV L+L  C RI+   L  + GL  L  L++  C  +T
Sbjct: 66  IDLRGESSINAEWMAYIGGFVNLVSLNLSDCQRINSSTLWPITGLTSLTELDLSRCFKVT 125

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           D+ +K L  + NLK L IS + VT  GI+ L  LQKL+LL+L G PVT   L +L  L  
Sbjct: 126 DAGIKHLQSVVNLKKLWISQTGVTKVGISLLASLQKLSLLDLGGLPVTDHNLIALQELTK 185

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L YL++    +++ G     +  +L  LNL +  +T         + +LE L+++ C I 
Sbjct: 186 LEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVT-----QTPNIPHLECLHMNMCTIV 240

Query: 193 DEGLVNLTGLCNLKCLELS------DTQ--------------VGSSGLRHLS---GLTNL 229
            E   + + L +LK L LS      +T+              V  + L++ S    + NL
Sbjct: 241 SEPKTHCS-LASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTSLQNFSFIETMINL 299

Query: 230 ESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAAL----------------- 271
           E ++LS T   D S+  +A +  +LK+LN+   +IT  G+  L                 
Sbjct: 300 EHLDLSSTAFGDDSVGFVACVGENLKNLNVSDTKITSAGVGNLAGHVPQLETFSLSQTFV 359

Query: 272 ---------TSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKH 318
                    T +  +  LDL    I +  A    A L++  +L++L +    L D  +  
Sbjct: 360 DDLSILLISTMMPCVKALDLGMTSIREEQAEPSLAALQSLTSLKTLSLEHPYLGDTALSA 419

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           +  L+ LT L+L ++ +LTD TL  +S L  LVSL V ++ +TS GL   +P K LR+L 
Sbjct: 420 LSSLTGLTHLSL-RSTSLTDSTLHHLSSLPNLVSLGVRDAVLTSNGLEKFRPPKRLRTLD 478

Query: 379 LESCK-VTANDIKRLQSR 395
           L+ C  +T +DI  L  R
Sbjct: 479 LKGCWLLTKDDIAGLCKR 496



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 173/376 (46%), Gaps = 53/376 (14%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           ++GL++LT L   R   +T  G+K    ++NL KL + +      G+  L  L KL  L+
Sbjct: 107 ITGLTSLTELDLSRCFKVTDAGIKHLQSVVNLKKLWISQTGVTKVGISLLASLQKLSLLD 166

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-- 122
           +     +TD ++  L  LT L+ L I  S VT+ G   +     L+ LNL    VT    
Sbjct: 167 LGGLP-VTDHNLIALQELTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQTPN 225

Query: 123 -----CLD-----------SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
                CL            +  +L SL  L L+    S +  E  S      +  L  ++
Sbjct: 226 IPHLECLHMNMCTIVSEPKTHCSLASLKKLVLSGANFSAE-TEALSFTNKSSITYLDVSK 284

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
            + +    ++ + NLE L+L S   GD+  G V   G  NLK L +SDT++ S+G+ +L+
Sbjct: 285 TSLQNFSFIETMINLEHLDLSSTAFGDDSVGFVACVG-ENLKNLNVSDTKITSAGVGNLA 343

Query: 225 G-LTNLESINLSFTGISD-----------------------------GSLRKLAGLSSLK 254
           G +  LE+ +LS T + D                              SL  L  L+SLK
Sbjct: 344 GHVPQLETFSLSQTFVDDLSILLISTMMPCVKALDLGMTSIREEQAEPSLAALQSLTSLK 403

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
           +L+L+   + DT L+AL+SLTGLTHL L    +TDS   +L +  NL SL +    LT  
Sbjct: 404 TLSLEHPYLGDTALSALSSLTGLTHLSLRSTSLTDSTLHHLSSLPNLVSLGVRDAVLTSN 463

Query: 315 GVKHIKDLSSLTLLNL 330
           G++  +    L  L+L
Sbjct: 464 GLEKFRPPKRLRTLDL 479


>gi|296124076|ref|YP_003631854.1| ribonuclease inhibitor [Planctomyces limnophilus DSM 3776]
 gi|296016416|gb|ADG69655.1| Leucine-rich repeat, ribonuclease inhibitor subtype [Planctomyces
           limnophilus DSM 3776]
          Length = 474

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 150/317 (47%), Gaps = 25/317 (7%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I D D+  ++ LT+L  L++   K+TD G+  LK L  L +L LE   +T    + L++ 
Sbjct: 117 IGDDDLALVAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEVLASF 176

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT----------- 179
            +L  L L R  + D      SK+  L+ L+L F  +TDE +  L GL+           
Sbjct: 177 PNLEVLYLRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQATR 236

Query: 180 -------------NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
                        NL+ LN+      D GL  L     L+ LEL DT++ S GL  L GL
Sbjct: 237 VTDASLPLIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGL 296

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
           TNLE +++  T I +  L  +  +  ++ L L     TD GL A++ L  L  LDL    
Sbjct: 297 TNLEELHVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGI 356

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
             D G   L    +L  L +     +DAG++ I+DL  L  LNL Q   +TD   + I+G
Sbjct: 357 FGDDGVKNLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQ-TRITDAAAKTIAG 415

Query: 347 LTGLVSLNVSNSRITSA 363
              L  LN+S + +T A
Sbjct: 416 FGELTELNLSQTEVTDA 432



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 157/310 (50%), Gaps = 2/310 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           ++ L++LT L       IT +G+     L NLV L LE       G   L     LE L 
Sbjct: 125 VAKLTHLTELRLE-GPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEVLASFPNLEVLY 183

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           ++  N I D  +  LS L  L++L +  + VTD G+  L GL +L  L L+   VT A L
Sbjct: 184 LRRTN-ILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQATRVTDASL 242

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             ++ L +L  LN+     +D G  + +   +L++L L    +T E L+ L GLTNLE L
Sbjct: 243 PLIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGLTNLEEL 302

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           ++    I ++GL  +  +  ++ L L DT     GL  +SGL NL  ++L+     D  +
Sbjct: 303 HVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGIFGDDGV 362

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + LAGL+SL+ L+L A   +D G+ ++  L  L  L+L   RITD+ A  +  F  L  L
Sbjct: 363 KNLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQTRITDAAAKTIAGFGELTEL 422

Query: 305 EICGGGLTDA 314
            +    +TDA
Sbjct: 423 NLSQTEVTDA 432



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 92/182 (50%), Gaps = 1/182 (0%)

Query: 211 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 270
           ++T +G   L  ++ LT+L  + L    I+D  +  L  L++L  L L+  Q+TDTG   
Sbjct: 113 AETSIGDDDLALVAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEV 172

Query: 271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
           L S   L  L L    I D   A+L     LR+L++    +TD G+K +  LS L  L L
Sbjct: 173 LASFPNLEVLYLRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRL 232

Query: 331 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
            Q   +TD +L LI+ L  L  LNV     T AGL  L   K LR L L+  ++T+  + 
Sbjct: 233 -QATRVTDASLPLIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLI 291

Query: 391 RL 392
           +L
Sbjct: 292 KL 293


>gi|46445833|ref|YP_007198.1| F-box protein [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399474|emb|CAF22923.1| putative F-box protein [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 337

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/320 (36%), Positives = 160/320 (50%), Gaps = 44/320 (13%)

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           M+PL  L   + L++ C K+TD+G+A+LK L  L  LNL  C                  
Sbjct: 1   MRPLVAL---QHLELGCCKLTDAGLAHLKSLVALQHLNLSWCD----------------- 40

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGD 193
                  L+D G    + + +L+ LNL    ++T   L HL  L  LE+L+L  CG + D
Sbjct: 41  ------NLTDTGLAHLTPLTALQHLNLSVCGKLTGAGLAHLTPLVALENLDLSQCGKLTD 94

Query: 194 EGLVNLTGLCNLK------CLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRK 246
            GL +LT L  L+      C +L+D      GL HL  L  L+ ++L   + ++D  L  
Sbjct: 95  AGLAHLTPLVALQHLGMRGCRKLTDV-----GLAHLRPLVALQHLDLDGCSNLTDAGLAH 149

Query: 247 LAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSL 304
           L  L +L+ LNL     +TD GLA L  L  L HLDL G   +TD+G A+L     L+ L
Sbjct: 150 LRPLVALQHLNLKRCDNLTDIGLAHLRPLVALQHLDLDGCNNLTDAGLAHLTPLVALQHL 209

Query: 305 EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITS 362
            + G    TDAG+ H+  L +L  LNLS   NLTD  L  +  L  L  LN+S  S++T 
Sbjct: 210 NLRGCFKFTDAGLAHLTPLVALQYLNLSDCSNLTDAGLAHLKSLVALQHLNLSWCSKLTG 269

Query: 363 AGLRHLKPLKNLRSLTLESC 382
           AGL HL PL  L  L L  C
Sbjct: 270 AGLAHLTPLVALEDLDLSQC 289



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 122/334 (36%), Positives = 184/334 (55%), Gaps = 10/334 (2%)

Query: 33  LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 91
           L+ L  L+L  C     GL +LK L+ L+ LN+ WC+ +TD+ +  L+ LT L+ L +S 
Sbjct: 4   LVALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLNLSV 63

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 149
           C K+T +G+A+L  L  L  L+L  C  +T A L  L+ L +L +L +  C +L+D G  
Sbjct: 64  CGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCRKLTDVGLA 123

Query: 150 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 207
               + +L+ L+L G + +TD  L HL+ L  L+ LNL  C  + D GL +L  L  L+ 
Sbjct: 124 HLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGLAHLRPLVALQH 183

Query: 208 LELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQIT 264
           L+L     +  +GL HL+ L  L+ +NL      +D  L  L  L +L+ LNL D   +T
Sbjct: 184 LDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLNLSDCSNLT 243

Query: 265 DTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 322
           D GLA L SL  L HL+L + +++T +G A+L     L  L++   G LTDAG+ H+  L
Sbjct: 244 DAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQCGKLTDAGLAHLALL 303

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           ++L  LNL +   LTD  L     L   + LN+ 
Sbjct: 304 TALQYLNLERCRKLTDAGLAHFKTLAASIYLNLQ 337



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 2/115 (1%)

Query: 271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLN 329
           +  L  L HL+L   ++TD+G A+L++   L+ L +     LTD G+ H+  L++L  LN
Sbjct: 1   MRPLVALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLN 60

Query: 330 LSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
           LS    LT   L  ++ L  L +L++S   ++T AGL HL PL  L+ L +  C+
Sbjct: 61  LSVCGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCR 115



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 27/139 (19%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L+ L  L  L+ R     T  G+     L+ L  L+L  C+ +   GL +LK L+ L+ 
Sbjct: 199 HLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLNLSDCSNLTDAGLAHLKSLVALQH 258

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS--------------------------CSKVT 96
           LN+ WC+ +T + +  L+ L  L+ L +S                          C K+T
Sbjct: 259 LNLSWCSKLTGAGLAHLTPLVALEDLDLSQCGKLTDAGLAHLALLTALQYLNLERCRKLT 318

Query: 97  DSGIAYLKGLQKLTLLNLE 115
           D+G+A+ K L     LNL+
Sbjct: 319 DAGLAHFKTLAASIYLNLQ 337


>gi|168699408|ref|ZP_02731685.1| hypothetical protein GobsU_07802 [Gemmata obscuriglobus UQM 2246]
          Length = 320

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/253 (37%), Positives = 141/253 (55%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N +TD+ MK L+ L NL SL++    VTD+G+  L  L+KLT L L    VT A +  L+
Sbjct: 59  NKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
           +L SL  L+L    ++D G ++ + +  L  L+L   ++TD  L  L  L NL +L+L S
Sbjct: 119 SLASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGS 178

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             +    L  L  L NLK L L DT++  +GL+ L+ LT+L ++ L+ T ++D  L+ L 
Sbjct: 179 TAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLT 238

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
            L +L  LNL   ++T  GL  L +L  LT LDL    +TD+G   L    NL+ L + G
Sbjct: 239 PLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVG 298

Query: 309 GGLTDAGVKHIKD 321
             +T  GVK  KD
Sbjct: 299 AKVTTKGVKEFKD 311



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 137/237 (57%)

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
           K+TD+G+  L  L+ LT L L G  VT A L +L+ L  L  L L   +++D G ++ + 
Sbjct: 60  KMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELAS 119

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
           + SL  L+L    +TD  +  L  LT L +L+L    + D GL  L  L NL  L L  T
Sbjct: 120 LASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGST 179

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
            V  + L+ L+ LTNL++++L  T ++D  L++LA L+SL +L L A ++TD GL  LT 
Sbjct: 180 AVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTP 239

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
           L  L+ L+L G ++T +G   L   KNL  L++    +TDAG+K +  L++L +L L
Sbjct: 240 LKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRL 296



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 148/287 (51%), Gaps = 25/287 (8%)

Query: 107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
           + +T + + G  +T A +  L+AL +L  L L    ++D G +  + +  L  L L   +
Sbjct: 49  RPVTAVGMVGNKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAK 108

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           +TD  +  L  L +L +L+L S  + D G+  L  L  L  L+LS T+V  +GL+ L+ L
Sbjct: 109 VTDAGVKELASLASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPL 168

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
            NL +++L  T ++  SL++LA L++LK+L+L   ++TD GL  L  LT LT L L   +
Sbjct: 169 KNLVTLSLGSTAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATK 228

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           +TD+G   L   KNL  L + G  +T AG+K +  L +LT+L+L                
Sbjct: 229 VTDAGLKGLTPLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTA------------ 276

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
                        +T AGL+ L PL NL+ L L   KVT   +K  +
Sbjct: 277 -------------VTDAGLKELTPLTNLKVLRLVGAKVTTKGVKEFK 310



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 119/202 (58%), Gaps = 1/202 (0%)

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D G+  L  L NL  L+L    V  +GL+ L+ L  L ++ L+   ++D  +++LA L+S
Sbjct: 63  DAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELASLAS 122

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L +L+L +  +TD G+  L  LT LT LDL G ++TD+G   L   KNL +L +    +T
Sbjct: 123 LTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGSTAVT 182

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 372
            A +K +  L++L  L+L  +  +TD  L+ ++ LT L +L ++ +++T AGL+ L PLK
Sbjct: 183 GASLKELAPLTNLKTLHL-YDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLK 241

Query: 373 NLRSLTLESCKVTANDIKRLQS 394
           NL  L L   KVT+  +K L +
Sbjct: 242 NLSDLNLGGTKVTSAGLKELAA 263



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 124/240 (51%), Gaps = 3/240 (1%)

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           N++TD  +  L  L NL SL L    + D GL  L  L  L  L+L+  +V  +G++ L+
Sbjct: 59  NKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
            L +L +++L+ T ++D  +++LA L+ L +L+L   ++TD GL  L  L  L  L L  
Sbjct: 119 SLASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGS 178

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             +T +    L    NL++L +    +TDAG+K +    +           +TD  L+ +
Sbjct: 179 TAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELA-PLTSLTTLTLAATKVTDAGLKGL 237

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           + L  L  LN+  +++TSAGL+ L  LKNL  L L+   VT   +K L    L NL   R
Sbjct: 238 TPLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTP--LTNLKVLR 295



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 112/232 (48%), Gaps = 26/232 (11%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L+ L  LT+L       +T  G+K  A L +L  LDL                     
Sbjct: 91  KALAPLKKLTTLQLTAAK-VTDAGVKELASLASLTTLDLA-------------------- 129

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
                   +TD+ +K L+ LT L +L +S +KVTD+G+  L  L+ L  L+L    VT A
Sbjct: 130 -----STNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGSTAVTGA 184

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L  L+ L +L  L+L   +++D G ++ + + SL  L L   ++TD  L  L  L NL 
Sbjct: 185 SLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLKNLS 244

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
            LNL    +   GL  L  L NL  L+L  T V  +GL+ L+ LTNL+ + L
Sbjct: 245 DLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRL 296


>gi|46446665|ref|YP_008030.1| hypothetical protein pc1031 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400306|emb|CAF23755.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 553

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 194/362 (53%), Gaps = 17/362 (4%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 66
           L  + +L+F  N  +T   + A     NL  L  ++C  +   GL +L  L  L+ L++ 
Sbjct: 193 LKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLS 252

Query: 67  WCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACL 124
           +C  +TD  +  L+ LT L+ L +S C  +TD G+A+L  L+ L  L L  C  +T A L
Sbjct: 253 YCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGL 312

Query: 125 DSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE 182
             L+ L +L +L+L++  +L+D G      + +L+ L+L     +TD  + HLK LT L+
Sbjct: 313 THLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQ 372

Query: 183 SLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGI 239
            L+L     + D GL +LT L  L+ L LS  + +  +GL HL+ LT L+ +NLS    +
Sbjct: 373 HLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNL 432

Query: 240 SDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRN 297
           +D  L  L  L++L+ L L D   +TDTGLA L  LT L HL+L   R +TD G A+L++
Sbjct: 433 TDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKS 492

Query: 298 FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
              L  L++      TD G+ H+  L+ L  L LS   +LTD       GL    +L VS
Sbjct: 493 LVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTD------DGLARFKTLAVS 546

Query: 357 NS 358
           ++
Sbjct: 547 HN 548



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/336 (36%), Positives = 177/336 (52%), Gaps = 32/336 (9%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 115
           L K+E+LN      +TD+ +  L    NLK L    C  VTD+G+A+L  L  L  L+L 
Sbjct: 193 LKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLS 252

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 174
            C                         L+DDG    + + +L+ L+L + E +TD+ L H
Sbjct: 253 YCE-----------------------NLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAH 289

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESI 232
           L  L  L+ L L +C  + D GL +LT L  L+ L+LS   ++  +GL HL  LT L+ +
Sbjct: 290 LAPLKALQRLALTNCKNLTDAGLTHLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHL 349

Query: 233 NLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITD 289
           +LS    ++D  +  L  L++L+ L+L   R +TD GLA LT L GL +L+L   + +TD
Sbjct: 350 DLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTD 409

Query: 290 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
           +G A+L     L+ L +     LTDAG+ H+  L++L  L LS   NLTD  L  ++ LT
Sbjct: 410 AGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLT 469

Query: 349 GLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 383
            L  LN+SN R +T  GL HLK L  L  L L  CK
Sbjct: 470 ALQHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSWCK 505



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 109/217 (50%), Gaps = 13/217 (5%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L  L+ L  L       +T  G+     L  L  LDL +   +   GL +L  LM L+ 
Sbjct: 339 HLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQY 398

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAY---LKGLQKLTLLNLEGCP 118
           LN+  C  +TD+ +  L+ LT L+ L + SC  +TD+G+ +   L  LQ L L + E   
Sbjct: 399 LNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWEN-- 456

Query: 119 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 176
           +T   L  L+ L +L +LNL+ C +L+DDG      + +L  L+L +    TDE L HL 
Sbjct: 457 LTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLT 516

Query: 177 GLTNLESLNLDSC-GIGDEGLVNLTGLC---NLKCLE 209
            LT L+ L L  C  + D+GL     L    NLK ++
Sbjct: 517 PLTGLQYLVLSLCYHLTDDGLARFKTLAVSHNLKIIK 553


>gi|290970865|ref|XP_002668286.1| predicted protein [Naegleria gruberi]
 gi|284081599|gb|EFC35542.1| predicted protein [Naegleria gruberi]
          Length = 368

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 185/358 (51%), Gaps = 3/358 (0%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I  +  K  + +  L  LD+        G+ ++  + +L SLNI + N I D  +K +
Sbjct: 12  NQIGDKEAKFISEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNI-YNNRIGDEGVKSI 70

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
             +  L SL I  +++ D G+ ++  +++LT LN+    +       +S +  L  LN+ 
Sbjct: 71  IEMKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISEMKQLTSLNIY 130

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
             ++ D+G +   ++  LK L++G N+I+ E    +  +  L SLN+ +  I DEG+ ++
Sbjct: 131 NNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNNRI-DEGVKSI 189

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
           + +  L  L +++ ++G    + +S +  L S+++    I D     ++ +  L SLN+ 
Sbjct: 190 SEMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNIY 249

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
             +I D G+ ++  +  LT LD+   RI D G  ++   K L SL+I    + D GVK I
Sbjct: 250 NNRIGDEGVKSIIEMKRLTSLDIGRNRIGDEGVKFISEMKQLASLDISENRIGDEGVKSI 309

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
            ++  LT LN+S+N  + D+  + IS +  L SL++  ++I   G++ +  +K L SL
Sbjct: 310 SEMKQLTSLNISEN-RIGDEGAKSISEMKRLKSLDIGGNQIGDEGVKFISEMKQLASL 366



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 173/348 (49%), Gaps = 25/348 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S +  LTSL    NN I  +G+K+ + +  LV L++        G+ ++  + +L SL+
Sbjct: 22  ISEMKQLTSLDIY-NNRIGDEGVKSISEMKQLVSLNIYNNRIGDEGVKSIIEMKQLTSLD 80

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I D  +K +S +  L SL IS +++ D    ++  +++LT LN+    +    +
Sbjct: 81  I-GGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISEMKQLTSLNIYNNRIGDEGV 139

Query: 125 DSLSALGSLFYLNLNRCQLS-----------------------DDGCEKFSKIGSLKVLN 161
            S+  +  L  L++ R Q+S                       D+G +  S++  L  LN
Sbjct: 140 KSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNNRIDEGVKSISEMKQLTSLN 199

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
           +  N I D+    +  +  L SL++ +  IGDEG + ++ +  L  L + + ++G  G++
Sbjct: 200 IAENRIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNIYNNRIGDEGVK 259

Query: 222 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
            +  +  L S+++    I D  ++ ++ +  L SL++   +I D G+ +++ +  LT L+
Sbjct: 260 SIIEMKRLTSLDIGRNRIGDEGVKFISEMKQLASLDISENRIGDEGVKSISEMKQLTSLN 319

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
           +   RI D GA  +   K L+SL+I G  + D GVK I ++  L  LN
Sbjct: 320 ISENRIGDEGAKSISEMKRLKSLDIGGNQIGDEGVKFISEMKQLASLN 367



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 137/262 (52%), Gaps = 8/262 (3%)

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           Q+ D   +  S++  L  L++  N I DE +  +  +  L SLN+ +  IGDEG+ ++  
Sbjct: 13  QIGDKEAKFISEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNIYNNRIGDEGVKSIIE 72

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           +  L  L++   ++G  G++ +S +  L S+N+S   I D     ++ +  L SLN+   
Sbjct: 73  MKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISEMKQLTSLNIYNN 132

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           +I D G+ ++  +  L  LD+   +I+  GA ++   K L SL I    + D GVK I +
Sbjct: 133 RIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNNRI-DEGVKSISE 191

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           +  LT LN+++N  + DK  + IS +  L SL++ N+RI   G   +  +K L SL + +
Sbjct: 192 MKQLTSLNIAEN-RIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNIYN 250

Query: 382 CKVTAN------DIKRLQSRDL 397
            ++         ++KRL S D+
Sbjct: 251 NRIGDEGVKSIIEMKRLTSLDI 272



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 137/274 (50%), Gaps = 2/274 (0%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           +++LT L + G  +       +S +  L  L++   ++ D+G +  S++  L  LN+  N
Sbjct: 1   MKQLTSLIISGNQIGDKEAKFISEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNIYNN 60

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
            I DE +  +  +  L SL++    IGDEG+  ++ +  L  L +S+ Q+G      +S 
Sbjct: 61  RIGDEGVKSIIEMKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISE 120

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           +  L S+N+    I D  ++ +  +  LKSL++   QI+  G   ++ +  L  L+++  
Sbjct: 121 MKQLTSLNIYNNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNN 180

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           RI D G   +   K L SL I    + D   K I ++  LT L++  N  + D+    IS
Sbjct: 181 RI-DEGVKSISEMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIYNN-RIGDEGAIFIS 238

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
            +  L SLN+ N+RI   G++ +  +K L SL +
Sbjct: 239 KMKQLTSLNIYNNRIGDEGVKSIIEMKRLTSLDI 272


>gi|149174591|ref|ZP_01853217.1| hypothetical protein PM8797T_09969 [Planctomyces maris DSM 8797]
 gi|148846701|gb|EDL61038.1| hypothetical protein PM8797T_09969 [Planctomyces maris DSM 8797]
          Length = 346

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 124/220 (56%), Gaps = 1/220 (0%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
           +++ SLK+L+   + ITD  + + +GL NLE+L L+   IGD GL +L  L  LK L L 
Sbjct: 111 AQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHLRDLRKLKVLRLW 170

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
           +T V   GL +L  LT L  +NLS T ISD  L  L G+ +L++L LDA Q++D GL  L
Sbjct: 171 ETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLDATQVSDRGLIYL 230

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
             L  L  LDL  A +TD+G  +L   +NL+ L +    ++D G+ ++  L  L  L++ 
Sbjct: 231 KELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQISDQGLVYLGKLKELHELDI- 289

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
           +  N +D  L  + GL  L  LN  +++IT AG   L   
Sbjct: 290 RYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRLHEF 329



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 125/243 (51%), Gaps = 8/243 (3%)

Query: 64  NIKWCNCI--------TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 115
           N+ W + +        T++D+  ++ L +LK L  S S +TDS ++Y +GL  L  L LE
Sbjct: 87  NVTWISSVGYGDDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILE 146

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
              +  A L  L  L  L  L L    ++D G      +  L  LNL   +I+D  L+HL
Sbjct: 147 RTSIGDAGLYHLRDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHL 206

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
           KG+ NL++L LD+  + D GL+ L  L  L+ L+L D +V  +GL HLS   NL+ + L+
Sbjct: 207 KGMLNLQTLYLDATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLA 266

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
            T ISD  L  L  L  L  L++     +D GL  L  L  L +L+    +ITD+G   L
Sbjct: 267 DTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRL 326

Query: 296 RNF 298
             F
Sbjct: 327 HEF 329



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 2/235 (0%)

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           E T+  L  +  L +L+ L+  S  I D  +    GL NL+ L L  T +G +GL HL  
Sbjct: 101 EFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHLRD 160

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           L  L+ + L  T ++D  L  L  L+ L  LNL   +I+D GL  L  +  L  L L   
Sbjct: 161 LRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLDAT 220

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           +++D G  YL+    L +L++    +TDAG+ H+ +  +L  L L+ +  ++D+ L  + 
Sbjct: 221 QVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLA-DTQISDQGLVYLG 279

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
            L  L  L++  +  + AGL HL+ LK+L  L  ES K+T     RL    LP L
Sbjct: 280 KLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRLHEF-LPKL 333



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 1/224 (0%)

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
           +    T A L +++ L SL  L+ +   ++D     F  + +L+ L L    I D  L H
Sbjct: 98  DDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYH 157

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L+ L  L+ L L    + D GL  L  L  L  L LS+T++  +GL HL G+ NL+++ L
Sbjct: 158 LRDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYL 217

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
             T +SD  L  L  L  L++L+L   ++TD GL  L+    L  L L   +I+D G  Y
Sbjct: 218 DATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQISDQGLVY 277

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
           L   K L  L+I     +DAG+ H++ L SL  LN  ++  +TD
Sbjct: 278 LGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNW-ESTKITD 320



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 121/246 (49%), Gaps = 27/246 (10%)

Query: 4   NLSGLSNLTSLSF--RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           +L+ ++ L SL      ++ IT   M  F GL NL  L LER +    GL +L+ L KL+
Sbjct: 106 DLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHLRDLRKLK 165

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            L + W   +TD  +  L  LT L  L +S +K++D+G+ +LKG     +LNL+      
Sbjct: 166 VLRL-WETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKG-----MLNLQT----- 214

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
                         L L+  Q+SD G     ++  L+ L+L   E+TD  LVHL    NL
Sbjct: 215 --------------LYLDATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNL 260

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           + L L    I D+GLV L  L  L  L++  T    +GL HL GL +L  +N   T I+D
Sbjct: 261 KKLTLADTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITD 320

Query: 242 GSLRKL 247
               +L
Sbjct: 321 AGYTRL 326



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 3/142 (2%)

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
           D  + T+  LAA+  L  L  LD   + ITDS  +Y +   NL +L +    + DAG+ H
Sbjct: 98  DDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYH 157

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           ++DL  L +L L +  ++TD  L  +  LT L  LN+S ++I+ AGL HLK + NL++L 
Sbjct: 158 LRDLRKLKVLRLWE-TDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLY 216

Query: 379 LESCKVTANDIKRLQSRDLPNL 400
           L++ +V+   +  L  ++LP L
Sbjct: 217 LDATQVSDRGLIYL--KELPKL 236



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 1/174 (0%)

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
           D +   + L  ++ L +L+ ++ S + I+D  +    GL +L++L L+   I D GL  L
Sbjct: 99  DYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHL 158

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
             L  L  L L+   +TD G +YL++   L  L +    ++DAG+ H+K + +L  L L 
Sbjct: 159 RDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLD 218

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
               ++D+ L  +  L  L +L++ ++ +T AGL HL   +NL+ LTL   +++
Sbjct: 219 A-TQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQIS 271


>gi|442319589|ref|YP_007359610.1| hypothetical protein MYSTI_02610 [Myxococcus stipitatus DSM 14675]
 gi|441487231|gb|AGC43926.1| hypothetical protein MYSTI_02610 [Myxococcus stipitatus DSM 14675]
          Length = 600

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 180/372 (48%), Gaps = 5/372 (1%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           +T  G+   +GL  L  + LE       GL  L+GL  L  + +     ++   ++ LS 
Sbjct: 153 VTDAGLPHLSGLRRLSVVRLEETAISDKGLAFLEGLTTLRRVGLA-GTSVSAQGLRFLSA 211

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
              L+ L +S +   D  +A++ G    TL+ L G  VT A L  L  +  L +L L R 
Sbjct: 212 QAELEWLDLSDTSTDDRVLAWVSGAHLHTLI-LSGTQVTDAGLARLRDMPHLTWLGLART 270

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            L+D G      + +L+ L+LG  ++TD  L+HL    +LE+L L    +   GL +L G
Sbjct: 271 GLTDGGLAPIGALRALEALHLGETQVTDAGLLHLAESKSLEALVLTKTRLHGPGLQHLAG 330

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L  L+ L L DT++  + +RHL GL  L  + LS T I+   L  L  LS+L+ L +   
Sbjct: 331 LTRLELLHLDDTRLDDAAMRHLRGLVALRELELSRTLITGAGLASLDALSALERLGVSGL 390

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
            +T   LA L     LT LDL    +     A++ +   LR L++      D  +  ++ 
Sbjct: 391 AVTADALAVLQKTERLTRLDLSHTPVGPEALAHVPS--GLRELDLSRTAFNDEWLPSLRR 448

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           LS L  L  ++   LTD  L  +  LT L +L++S + +  +GL HL+ L +L  L L +
Sbjct: 449 LSRLQSLR-AERTLLTDLGLGQLGELTELAALHLSGTLVNGSGLAHLQRLPHLAHLDLGA 507

Query: 382 CKVTANDIKRLQ 393
             + A+    LQ
Sbjct: 508 TWLEAHYTPALQ 519



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 175/382 (45%), Gaps = 52/382 (13%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE------------- 115
           + + D+ +  L   T  ++L +  ++VTD+G+ +L GL++L+++ LE             
Sbjct: 127 SSLGDAHLGALRDFTAWEALHLDGTRVTDAGLPHLSGLRRLSVVRLEETAISDKGLAFLE 186

Query: 116 -----------GCPVTAACLDSLSALGSLFYLNLNR-----------------------C 141
                      G  V+A  L  LSA   L +L+L+                         
Sbjct: 187 GLTTLRRVGLAGTSVSAQGLRFLSAQAELEWLDLSDTSTDDRVLAWVSGAHLHTLILSGT 246

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           Q++D G  +   +  L  L L    +TD  L  +  L  LE+L+L    + D GL++L  
Sbjct: 247 QVTDAGLARLRDMPHLTWLGLARTGLTDGGLAPIGALRALEALHLGETQVTDAGLLHLAE 306

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
             +L+ L L+ T++   GL+HL+GLT LE ++L  T + D ++R L GL +L+ L L   
Sbjct: 307 SKSLEALVLTKTRLHGPGLQHLAGLTRLELLHLDDTRLDDAAMRHLRGLVALRELELSRT 366

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
            IT  GLA+L +L+ L  L + G  +T    A L+  + L  L++    +    + H+  
Sbjct: 367 LITGAGLASLDALSALERLGVSGLAVTADALAVLQKTERLTRLDLSHTPVGPEALAHVP- 425

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
            S L  L+LS+     D+ L  +  L+ L SL    + +T  GL  L  L  L +L L  
Sbjct: 426 -SGLRELDLSRTA-FNDEWLPSLRRLSRLQSLRAERTLLTDLGLGQLGELTELAALHLSG 483

Query: 382 CKVTANDIKRLQSRDLPNLVSF 403
             V  + +  LQ   LP+L   
Sbjct: 484 TLVNGSGLAHLQR--LPHLAHL 503



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 132/263 (50%), Gaps = 2/263 (0%)

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L  +   L D          + + L+L    +TD  L HL GL  L  + L+   I
Sbjct: 118 SLVTLRASGSSLGDAHLGALRDFTAWEALHLDGTRVTDAGLPHLSGLRRLSVVRLEETAI 177

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D+GL  L GL  L+ + L+ T V + GLR LS    LE ++LS T   D  L  ++G +
Sbjct: 178 SDKGLAFLEGLTTLRRVGLAGTSVSAQGLRFLSAQAELEWLDLSDTSTDDRVLAWVSG-A 236

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L +L L   Q+TD GLA L  +  LT L L    +TD G A +   + L +L +    +
Sbjct: 237 HLHTLILSGTQVTDAGLARLRDMPHLTWLGLARTGLTDGGLAPIGALRALEALHLGETQV 296

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
           TDAG+ H+ +  SL  L L++   L    L+ ++GLT L  L++ ++R+  A +RHL+ L
Sbjct: 297 TDAGLLHLAESKSLEALVLTKT-RLHGPGLQHLAGLTRLELLHLDDTRLDDAAMRHLRGL 355

Query: 372 KNLRSLTLESCKVTANDIKRLQS 394
             LR L L    +T   +  L +
Sbjct: 356 VALRELELSRTLITGAGLASLDA 378



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 138/272 (50%), Gaps = 8/272 (2%)

Query: 45  TRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 103
           TR+HG GL +L GL +LE L++     + D+ M+ L GL  L+ L++S + +T +G+A L
Sbjct: 318 TRLHGPGLQHLAGLTRLELLHLD-DTRLDDAAMRHLRGLVALRELELSRTLITGAGLASL 376

Query: 104 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNL 162
             L  L  L + G  VTA  L  L     L  L+L+   +   G E  + + S L+ L+L
Sbjct: 377 DALSALERLGVSGLAVTADALAVLQKTERLTRLDLSHTPV---GPEALAHVPSGLRELDL 433

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
                 DE L  L+ L+ L+SL  +   + D GL  L  L  L  L LS T V  SGL H
Sbjct: 434 SRTAFNDEWLPSLRRLSRLQSLRAERTLLTDLGLGQLGELTELAALHLSGTLVNGSGLAH 493

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           L  L +L  ++L  T +       L GL+ L  L+L   ++ D  L  L    GL  L L
Sbjct: 494 LQRLPHLAHLDLGATWLEAHYTPALQGLTRLTWLSLARGRLGDAALGHLPP--GLHTLYL 551

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
               +TD+G   LR+  +LR L++ G  +TDA
Sbjct: 552 TRTGVTDAGLDSLRSLPHLRQLDLRGTAVTDA 583



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 140/285 (49%), Gaps = 2/285 (0%)

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L  L   G  +  A L +L    +   L+L+  +++D G    S +  L V+ L    I+
Sbjct: 119 LVTLRASGSSLGDAHLGALRDFTAWEALHLDGTRVTDAGLPHLSGLRRLSVVRLEETAIS 178

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           D+ L  L+GLT L  + L    +  +GL  L+    L+ L+LSDT      L  +SG  +
Sbjct: 179 DKGLAFLEGLTTLRRVGLAGTSVSAQGLRFLSAQAELEWLDLSDTSTDDRVLAWVSG-AH 237

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           L ++ LS T ++D  L +L  +  L  L L    +TD GLA + +L  L  L L   ++T
Sbjct: 238 LHTLILSGTQVTDAGLARLRDMPHLTWLGLARTGLTDGGLAPIGALRALEALHLGETQVT 297

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
           D+G  +L   K+L +L +    L   G++H+  L+ L LL+L  +  L D  +  + GL 
Sbjct: 298 DAGLLHLAESKSLEALVLTKTRLHGPGLQHLAGLTRLELLHL-DDTRLDDAAMRHLRGLV 356

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
            L  L +S + IT AGL  L  L  L  L +    VTA+ +  LQ
Sbjct: 357 ALRELELSRTLITGAGLASLDALSALERLGVSGLAVTADALAVLQ 401



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 163/364 (44%), Gaps = 30/364 (8%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           +T  G+     + +L  L L R     GGL  +  L  LE+L++     +TD+ +  L+ 
Sbjct: 248 VTDAGLARLRDMPHLTWLGLARTGLTDGGLAPIGALRALEALHLGETQ-VTDAGLLHLAE 306

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
             +L++L ++ +++   G+ +L GL +L LL+L+   +  A +  L  L +L  L L+R 
Sbjct: 307 SKSLEALVLTKTRLHGPGLQHLAGLTRLELLHLDDTRLDDAAMRHLRGLVALRELELSRT 366

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            ++  G      + +L+ L +    +T + L  L+    L  L+L    +G E L ++  
Sbjct: 367 LITGAGLASLDALSALERLGVSGLAVTADALAVLQKTERLTRLDLSHTPVGPEALAHVP- 425

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
              L+ L+LS T      L  L  L+ L+S+    T ++D  L +L  L+ L +L+L   
Sbjct: 426 -SGLRELDLSRTAFNDEWLPSLRRLSRLQSLRAERTLLTDLGLGQLGELTELAALHLSGT 484

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
            +  +GLA L  L  L HLDL    +       L+    L  L +  G L DA + H+  
Sbjct: 485 LVNGSGLAHLQRLPHLAHLDLGATWLEAHYTPALQGLTRLTWLSLARGRLGDAALGHLP- 543

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
                                      GL +L ++ + +T AGL  L+ L +LR L L  
Sbjct: 544 --------------------------PGLHTLYLTRTGVTDAGLDSLRSLPHLRQLDLRG 577

Query: 382 CKVT 385
             VT
Sbjct: 578 TAVT 581



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 110/214 (51%), Gaps = 2/214 (0%)

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           T+L +L      +GD  L  L      + L L  T+V  +GL HLSGL  L  + L  T 
Sbjct: 117 TSLVTLRASGSSLGDAHLGALRDFTAWEALHLDGTRVTDAGLPHLSGLRRLSVVRLEETA 176

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           ISD  L  L GL++L+ + L    ++  GL  L++   L  LDL      D   A++ + 
Sbjct: 177 ISDKGLAFLEGLTTLRRVGLAGTSVSAQGLRFLSAQAELEWLDLSDTSTDDRVLAWV-SG 235

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
            +L +L + G  +TDAG+  ++D+  LT L L++   LTD  L  I  L  L +L++  +
Sbjct: 236 AHLHTLILSGTQVTDAGLARLRDMPHLTWLGLART-GLTDGGLAPIGALRALEALHLGET 294

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           ++T AGL HL   K+L +L L   ++    ++ L
Sbjct: 295 QVTDAGLLHLAESKSLEALVLTKTRLHGPGLQHL 328



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 26/156 (16%)

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
           LAAL   T L  L   G+ + D+    LR+F    +L + G  +TDAG+ H+  L  L++
Sbjct: 110 LAALVRGTSLVTLRASGSSLGDAHLGALRDFTAWEALHLDGTRVTDAGLPHLSGLRRLSV 169

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL---------------- 371
           + L +   ++DK L  + GLT L  + ++ + +++ GLR L                   
Sbjct: 170 VRLEETA-ISDKGLAFLEGLTTLRRVGLAGTSVSAQGLRFLSAQAELEWLDLSDTSTDDR 228

Query: 372 -------KNLRSLTLESCKVTANDIKRLQSRDLPNL 400
                   +L +L L   +VT   + RL  RD+P+L
Sbjct: 229 VLAWVSGAHLHTLILSGTQVTDAGLARL--RDMPHL 262


>gi|46447626|ref|YP_008991.1| hypothetical protein pc1992 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401267|emb|CAF24716.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 537

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/281 (36%), Positives = 163/281 (58%), Gaps = 9/281 (3%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKL 109
           L+ LK    L+ LN+K C  +TD+ +  L+ LT L+ L +S C  +TD+G+A L  L  L
Sbjct: 257 LLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIAL 316

Query: 110 TLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NE 166
             L+L  C  +T A L  L+ LG+L YL+L+ C +L+D G    + +  L+ LNL +  +
Sbjct: 317 QHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQK 376

Query: 167 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS 224
           ++D  L HL+ L  L+ L+L  C  + D GL +L  L  L+ L L+  + +  +GL HL 
Sbjct: 377 LSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLR 436

Query: 225 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 282
            L  L+ ++LS+   +++  L     L++L+ LNL+  +++TD GLA L+ L  L HLDL
Sbjct: 437 PLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDL 496

Query: 283 FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 322
           +   ITD+G A+L+    L+ L +     LTDAG+ H+  L
Sbjct: 497 WCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAHLSPL 537



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/298 (35%), Positives = 171/298 (57%), Gaps = 9/298 (3%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           ++E LN      +TD+ +  L    NLK L + SC  +TD+G+A+L  L  L  L+L  C
Sbjct: 240 EIEELNFSDNVYLTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFC 299

Query: 118 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 174
             +T A L +L+ L +L +L+L+ C+ L+D G    + +G+L  L+L    ++TD  L H
Sbjct: 300 RNLTDAGLANLTPLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAH 359

Query: 175 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESI 232
           L  L +L+ LNL  C  + D GL +L  L  L+ L+LS  Q +  +GL HL+ LT L+ +
Sbjct: 360 LTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHL 419

Query: 233 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITD 289
           +L+    +++  L  L  L +L+ L+L   +++T+ GL    SLT L +L+L    ++TD
Sbjct: 420 SLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTD 479

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           +G A+L     L+ L++    +TDAG+ H+K L +L  L LS+  NLTD  L  +S L
Sbjct: 480 AGLAHLSPLGALQHLDLWCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAHLSPL 537



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 96/273 (35%), Positives = 149/273 (54%), Gaps = 8/273 (2%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWC 68
           NL  L+ +    +T  G+     L  L +LDL  C  +   GL NL  L+ L+ L++ WC
Sbjct: 265 NLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWC 324

Query: 69  NCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDS 126
             +TD+ +  L+ L  L  L +S C K+TD+G+A+L  L  L  LNL  C  ++ A L  
Sbjct: 325 KNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAH 384

Query: 127 LSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESL 184
           L +L +L +L+L+ CQ L+D G    +++ +L+ L+L     +T+  LVHL+ L  L+ L
Sbjct: 385 LRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHL 444

Query: 185 NLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDG 242
           +L  C  + ++GL     L  L+ L L+  Q +  +GL HLS L  L+ ++L  T I+D 
Sbjct: 445 DLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITDA 504

Query: 243 SLRKLAGLSSLKSLNLD-ARQITDTGLAALTSL 274
            L  L  L +L+ L L     +TD GLA L+ L
Sbjct: 505 GLAHLKPLGALQYLGLSRCTNLTDAGLAHLSPL 537



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/272 (37%), Positives = 149/272 (54%), Gaps = 8/272 (2%)

Query: 119 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 176
           +T A L +L    +L  LNL  C+ L+D G    + + +L+ L+L F   +TD  L +L 
Sbjct: 252 LTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLT 311

Query: 177 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINL 234
            L  L+ L+L  C  + D GL +LT L  L  L+LS   ++  +GL HL+ L +L+ +NL
Sbjct: 312 PLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNL 371

Query: 235 SF-TGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGAR-ITDSG 291
            +   +SD  L  L  L +L+ L+L   Q +TD GLA L  LT L HL L   + +T++G
Sbjct: 372 RYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAG 431

Query: 292 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
             +LR    L+ L++     LT+ G+   K L++L  LNL+    LTD  L  +S L  L
Sbjct: 432 LVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGAL 491

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
             L++  + IT AGL HLKPL  L+ L L  C
Sbjct: 492 QHLDLWCTNITDAGLAHLKPLGALQYLGLSRC 523



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/247 (38%), Positives = 137/247 (55%), Gaps = 10/247 (4%)

Query: 157 LKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ 214
           LK+LNL     +TD  L HL  LT L  L+L  C  + D GL NLT L  L+ L+LS  +
Sbjct: 266 LKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWCK 325

Query: 215 -VGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 271
            +  +GL HL+ L  L  ++LS  G ++D  L  L  L  L+ LNL   ++++D GLA L
Sbjct: 326 NLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHL 385

Query: 272 TSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLL 328
            SL  L HLDL +   +TD+G A+L     L+ L +  C   LT+AG+ H++ L +L  L
Sbjct: 386 RSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKN-LTEAGLVHLRPLVTLQHL 444

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAN 387
           +LS    LT+  L L   LT L  LN+++  ++T AGL HL PL  L+ L L    +T  
Sbjct: 445 DLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITDA 504

Query: 388 DIKRLQS 394
            +  L+ 
Sbjct: 505 GLAHLKP 511



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 90/248 (36%), Positives = 132/248 (53%), Gaps = 31/248 (12%)

Query: 149 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
           EK  K  S ++  L F++   +TD  L+ LK   NL+ LNL SC        NLT     
Sbjct: 231 EKILKHFSNEIEELNFSDNVYLTDAYLLALKDCKNLKMLNLKSCK-------NLT----- 278

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 263
                       +GL HL+ LT L  ++LSF   ++D  L  L  L +L+ L+L   + +
Sbjct: 279 -----------DAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWCKNL 327

Query: 264 TDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKD 321
           TD GLA LT L  L +LDL    ++TD+G A+L    +L+ L +     L+DAG+ H++ 
Sbjct: 328 TDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRS 387

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLE 380
           L +L  L+LS   NLTD  L  ++ LT L  L+++  + +T AGL HL+PL  L+ L L 
Sbjct: 388 LVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLS 447

Query: 381 SCKVTAND 388
            C+   ND
Sbjct: 448 YCQKLTND 455



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L+ L+ L  LS  R   +T  G+     L+ L  LDL  C ++ + GL   K L  L+ 
Sbjct: 409 HLARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQY 468

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTA 121
           LN+  C  +TD+ +  LS L  L+ L + C+ +TD+G+A+LK L  L  L L  C  +T 
Sbjct: 469 LNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKPLGALQYLGLSRCTNLTD 528

Query: 122 ACLDSLSAL 130
           A L  LS L
Sbjct: 529 AGLAHLSPL 537


>gi|406830023|ref|ZP_11089617.1| hypothetical protein SpalD1_00247 [Schlesneria paludicola DSM
           18645]
          Length = 374

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 173/338 (51%), Gaps = 24/338 (7%)

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           +N++      D  +  L   T + SL ++ +K+TDSG+  ++    LT+L L    +T  
Sbjct: 55  VNLQQSERFGDGYVHALKPFTKMTSLNLNSTKITDSGLKGIRNFTSLTMLTLAFTKITDV 114

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L  L  L +L  L+L  C                 + ++G NEI        K LT+L 
Sbjct: 115 GLVELKDLKNLTRLDLGGCT---------------AITDVGLNEI--------KELTSLA 151

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SL+L      D GL  L  L  L  LEL  TQ+   GL+ L  LT+L  + L  T ISD 
Sbjct: 152 SLHLSYTQFTDVGLKELADLKCLSNLELRGTQITDDGLKELGTLTSLTRLTLMQTKISDL 211

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            LR+L GL +L+ L+L   +ITD GL  +  L  +  L LFG  ITD G   +    NL 
Sbjct: 212 GLRELKGLRNLQILDLGLTEITDEGLKEIIDLKQIHSLYLFGDEITDEGMQSIGELNNLT 271

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            L++    +T+ G+K I  L +L  L+L  +  +TD  L+ I  +T L ++N+  + IT+
Sbjct: 272 ELDLIQTEITNEGLKEISGLKNLKKLHLLNDGKITDVGLKEIGTMTQLTNINLGRTGITN 331

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           AGL+ L+ LKNL+SL +   +VT+  +  LQ ++LP L
Sbjct: 332 AGLKELRNLKNLQSLDVSETEVTSEGVVALQ-KELPKL 368



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 159/303 (52%), Gaps = 4/303 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L   + +TSL+   +  IT  G+K      +L  L L        GLV LK L  L  L+
Sbjct: 71  LKPFTKMTSLNLN-STKITDSGLKGIRNFTSLTMLTLAFTKITDVGLVELKDLKNLTRLD 129

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +  C  ITD  +  +  LT+L SL +S ++ TD G+  L  L+ L+ L L G  +T   L
Sbjct: 130 LGGCTAITDVGLNEIKELTSLASLHLSYTQFTDVGLKELADLKCLSNLELRGTQITDDGL 189

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             L  L SL  L L + ++SD G  +   + +L++L+LG  EITDE L  +  L  + SL
Sbjct: 190 KELGTLTSLTRLTLMQTKISDLGLRELKGLRNLQILDLGLTEITDEGLKEIIDLKQIHSL 249

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGS 243
            L    I DEG+ ++  L NL  L+L  T++ + GL+ +SGL NL+ ++L   G I+D  
Sbjct: 250 YLFGDEITDEGMQSIGELNNLTELDLIQTEITNEGLKEISGLKNLKKLHLLNDGKITDVG 309

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           L+++  ++ L ++NL    IT+ GL  L +L  L  LD+    +T  G   L+  K L  
Sbjct: 310 LKEIGTMTQLTNINLGRTGITNAGLKELRNLKNLQSLDVSETEVTSEGVVALQ--KELPK 367

Query: 304 LEI 306
           L+I
Sbjct: 368 LDI 370



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 13/106 (12%)

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLS----SLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           K +  +E+ GG       K ++D S     +  +NL Q+    D  +  +   T + SLN
Sbjct: 29  KAIEKIELLGG-------KVMRDESLPGRPVIYVNLQQSERFGDGYVHALKPFTKMTSLN 81

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           +++++IT +GL+ ++   +L  LTL   K+T  D+  ++ +DL NL
Sbjct: 82  LNSTKITDSGLKGIRNFTSLTMLTLAFTKIT--DVGLVELKDLKNL 125


>gi|168698162|ref|ZP_02730439.1| hypothetical protein GobsU_01482 [Gemmata obscuriglobus UQM 2246]
          Length = 295

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 153/304 (50%), Gaps = 26/304 (8%)

Query: 67  WCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 125
           W +  +TD+ +K L+GLTNL  L +  + VTD G+  L  L+ L  L+L    VT A L 
Sbjct: 7   WRDLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLK 66

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           +L+ L  L  L L    ++D G ++     SLK L L   ++TD  L  L    NL  L 
Sbjct: 67  ALAPLTGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLG 126

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           L   G+ D GL  L    NL  L LS T V  +GL+ L+ L NL  + L  TG++D  L+
Sbjct: 127 LGGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLK 186

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
           +LA   +L  L+L + ++TD GL  L  L  LT LDL   ++TD G   L   K L +L 
Sbjct: 187 ELAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLI 246

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
           + G G+TDAG+K                          ++GLT L  LN+  +++T AG 
Sbjct: 247 LIGTGVTDAGLKE-------------------------LAGLTNLTRLNLYRTKVTDAGW 281

Query: 366 RHLK 369
           + LK
Sbjct: 282 KELK 285



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 104/276 (37%), Positives = 145/276 (52%), Gaps = 1/276 (0%)

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           VT A L  L+ L +L  L L    ++D G E+ + + +L  L+LG  ++TD  L  L  L
Sbjct: 12  VTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKALAPL 71

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           T L  L L   G+ D GL  L    +LK L L  T+V  +GL+ L    NL  + L  TG
Sbjct: 72  TGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGLGGTG 131

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           ++D  LR+L    +L +L L    +TD GL  L  L  LT L L G  + D G   L  F
Sbjct: 132 VTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKELAPF 191

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
           KNL  L++    +TDAG+K +  L +LTLL+L +   +TD  L  ++GL  L +L +  +
Sbjct: 192 KNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGR-TQVTDDGLRELTGLKALTTLILIGT 250

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
            +T AGL+ L  L NL  L L   KVT    K L+S
Sbjct: 251 GVTDAGLKELAGLTNLTRLNLYRTKVTDAGWKELKS 286



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 144/303 (47%), Gaps = 25/303 (8%)

Query: 18  RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 77
           R+  +T  G+K  AGL NL +L                         I     +TD  ++
Sbjct: 8   RDLQVTDAGLKELAGLTNLTQL-------------------------ILLGTAVTDVGLE 42

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
            L+ L NL +L +  +KVTD+G+  L  L  LT L L    VT A L  L    SL  L 
Sbjct: 43  ELAPLKNLNTLDLGKTKVTDAGLKALAPLTGLTRLALGDTGVTDAGLKELVPFKSLKTLY 102

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           L   +++D G ++  +  +L VL LG   +TD  L  L    NL +L L   G+ D GL 
Sbjct: 103 LFSTKVTDAGLKELGRFKNLTVLGLGGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLK 162

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
            L  L NL  L L  T V   GL+ L+   NL  ++L  T ++D  L++L  L +L  L+
Sbjct: 163 ELAPLKNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLD 222

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
           L   Q+TD GL  LT L  LT L L G  +TD+G   L    NL  L +    +TDAG K
Sbjct: 223 LGRTQVTDDGLRELTGLKALTTLILIGTGVTDAGLKELAGLTNLTRLNLYRTKVTDAGWK 282

Query: 318 HIK 320
            +K
Sbjct: 283 ELK 285



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 103/183 (56%), Gaps = 1/183 (0%)

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
           D QV  +GL+ L+GLTNL  + L  T ++D  L +LA L +L +L+L   ++TD GL AL
Sbjct: 9   DLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKAL 68

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
             LTGLT L L    +TD+G   L  FK+L++L +    +TDAG+K +    +LT+L L 
Sbjct: 69  APLTGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGLG 128

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
               +TD  L  +     L +L +S + +T AGL+ L PLKNL  L L    V    +K 
Sbjct: 129 -GTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKE 187

Query: 392 LQS 394
           L  
Sbjct: 188 LAP 190



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           ++  +TD  L+ ++GLT L  L +  + +T  GL  L PLKNL +L L   KVT   +K 
Sbjct: 8   RDLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKA 67

Query: 392 LQS 394
           L  
Sbjct: 68  LAP 70


>gi|290984426|ref|XP_002674928.1| predicted protein [Naegleria gruberi]
 gi|284088521|gb|EFC42184.1| predicted protein [Naegleria gruberi]
          Length = 612

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 115/404 (28%), Positives = 196/404 (48%), Gaps = 27/404 (6%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLDLERCTRIHGGLVNLKGLMKL 60
            E+++ L  LTSL +   N I ++G+K  +   N L KL++      + G   +  L +L
Sbjct: 127 VESMAELKQLTSL-YISGNYIGSEGVKIISESFNKLTKLNISANYIDNVGAKYISQLKQL 185

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            SL I   + I D+ +  LSGL +L +L IS  K+   G  Y+   ++LT LN+  C + 
Sbjct: 186 TSLEIACNDSIGDAGIIYLSGLEHLTNLDISRIKIGSGGAQYIGKFEQLTCLNINTCSID 245

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
              L S+S L  L  L+++  ++S +G +  SK+  L  L +  + I  E   ++  L  
Sbjct: 246 DKVLQSISQLKKLIVLHISENEISIEGAKYISKLNQLTSLYISESGIRSEQARYISELKQ 305

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  L++    + +EG   +  +  L  L +S+  V   G  ++S +T L  +++S   I+
Sbjct: 306 LTYLDVTKNYVREEGAKYIRNMKKLTTLLVSENYVCEQGAEYISEMTQLTKLDISVNNIN 365

Query: 241 DG------SLRKLAGLSSLKS------------------LNLDARQITDTGLAALTSLTG 276
                    L++L  LS L+S                  LN    ++   G+  ++ L  
Sbjct: 366 KKGVFHICKLKQLTELSILESHFDGEGLEYISELKNLTILNFPYSEMRGVGVKYISQLNQ 425

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           LT L++   RI+D GA Y+   K L+ L I    ++  G  ++ DL +LT L ++ N NL
Sbjct: 426 LTCLNIPYNRISDEGAKYISELKQLKELSISDNSISSEGANYLTDLKNLTKLVITGN-NL 484

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
            +     IS L  L  L++S++ I+S G +HL  LKNL  L ++
Sbjct: 485 GNDGAMHISELKKLTILDISHNSISSEGAKHLSDLKNLTELVIK 528



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 158/327 (48%), Gaps = 2/327 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S L+ LTSL +   + I ++  +  + L  L  LD+ +      G   ++ + KL +L 
Sbjct: 276 ISKLNQLTSL-YISESGIRSEQARYISELKQLTYLDVTKNYVREEGAKYIRNMKKLTTLL 334

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N + +   + +S +T L  L IS + +   G+ ++  L++LT L++         L
Sbjct: 335 VSE-NYVCEQGAEYISEMTQLTKLDISVNNINKKGVFHICKLKQLTELSILESHFDGEGL 393

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           + +S L +L  LN    ++   G +  S++  L  LN+ +N I+DE   ++  L  L+ L
Sbjct: 394 EYISELKNLTILNFPYSEMRGVGVKYISQLNQLTCLNIPYNRISDEGAKYISELKQLKEL 453

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           ++    I  EG   LT L NL  L ++   +G+ G  H+S L  L  +++S   IS    
Sbjct: 454 SISDNSISSEGANYLTDLKNLTKLVITGNNLGNDGAMHISELKKLTILDISHNSISSEGA 513

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + L+ L +L  L +    + + G  +++ L  LTHLD+    I+D G   +     L  L
Sbjct: 514 KHLSDLKNLTELVIKGNNLGNDGAMSISELKQLTHLDVCDNNISDEGFKAISKMNQLTRL 573

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLS 331
            I    ++  GV+ I+ ++  T +++ 
Sbjct: 574 SIYENSISGEGVEFIRKMTQSTFIDIQ 600



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 30/236 (12%)

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           +I  E + ++  L  L SL +    I DE + ++  L  L  L +S   +GS G++ +S 
Sbjct: 97  KIDSESVTYIGQLKQLTSLEIQGMDIDDEHVESMAELKQLTSLYISGNYIGSEGVKIIS- 155

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-G 284
               ES N                   L  LN+ A  I + G   ++ L  LT L++   
Sbjct: 156 ----ESFN------------------KLTKLNISANYIDNVGAKYISQLKQLTSLEIACN 193

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             I D+G  YL   ++L +L+I    +   G ++I     LT LN++  C++ DK L+ I
Sbjct: 194 DSIGDAGIIYLSGLEHLTNLDISRIKIGSGGAQYIGKFEQLTCLNIN-TCSIDDKVLQSI 252

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           S L  L+ L++S + I+  G +++  L  L SL      ++ + I+  Q+R +  L
Sbjct: 253 SQLKKLIVLHISENEISIEGAKYISKLNQLTSLY-----ISESGIRSEQARYISEL 303


>gi|290993170|ref|XP_002679206.1| leucine rich repeat protein [Naegleria gruberi]
 gi|284092822|gb|EFC46462.1| leucine rich repeat protein [Naegleria gruberi]
          Length = 527

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 163/337 (48%), Gaps = 16/337 (4%)

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           K L+ ++SL      C  +   K +S L  L  L I  S + D G+ Y+  L++L  L++
Sbjct: 93  KKLISMKSLTELIIKCDDEGSAKFISELKQLTRLTIDASHIRDEGVRYISELKQLAYLSV 152

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---- 170
               ++   +  L  L  L  L +   ++  +GC+  S++  L  L +  N I DE    
Sbjct: 153 HSNDISDDGVKYLRELKQLTTLIIFSNRVGSEGCKCISELKQLTSLCIDDNHINDEGANN 212

Query: 171 --------CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
                   C+  LK LT   SL +D   I DEG   L+ L  L  L++S   +G+ G ++
Sbjct: 213 RVGSEGCKCISELKQLT---SLCIDDNHINDEGAKYLSELAQLTYLDISSNGLGNEGTKY 269

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           +S L  LE +N+S   I D  L     LS L SL L   +I   G   L+ L  LT LD+
Sbjct: 270 ISTLNQLEKLNISQNYIGDEGLEYFGKLSQLTSLELSNNKIGTEGAKYLSELKQLTQLDI 329

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
              +I D GA Y    K L +L I    + + GVK+I +L  L  L++S+N  + ++ ++
Sbjct: 330 EYNKIGDKGAMYFGELKQLVNLIINNNRIGNDGVKYIGELKQLIYLDISEN-RIGNEGIK 388

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
            I  L  L  +N+S +RI + G +++  L  L SL L
Sbjct: 389 YIGELKQLTDVNISENRIGNEGAKYIGQLSQLTSLYL 425



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 178/368 (48%), Gaps = 35/368 (9%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-------EGCP----- 118
           I D  ++ +S L  L  L +  + ++D G+ YL+ L++LT L +       EGC      
Sbjct: 133 IRDEGVRYISELKQLAYLSVHSNDISDDGVKYLRELKQLTTLIIFSNRVGSEGCKCISEL 192

Query: 119 --VTAACLDS-------------------LSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
             +T+ C+D                    +S L  L  L ++   ++D+G +  S++  L
Sbjct: 193 KQLTSLCIDDNHINDEGANNRVGSEGCKCISELKQLTSLCIDDNHINDEGAKYLSELAQL 252

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
             L++  N + +E   ++  L  LE LN+    IGDEGL     L  L  LELS+ ++G+
Sbjct: 253 TYLDISSNGLGNEGTKYISTLNQLEKLNISQNYIGDEGLEYFGKLSQLTSLELSNNKIGT 312

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
            G ++LS L  L  +++ +  I D        L  L +L ++  +I + G+  +  L  L
Sbjct: 313 EGAKYLSELKQLTQLDIEYNKIGDKGAMYFGELKQLVNLIINNNRIGNDGVKYIGELKQL 372

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
            +LD+   RI + G  Y+   K L  + I    + + G K+I  LS LT L LS N N+ 
Sbjct: 373 IYLDISENRIGNEGIKYIGELKQLTDVNISENRIGNEGAKYIGQLSQLTSLYLSNN-NIG 431

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRD 396
           ++  + IS L  L+ L ++N++I + G +++  +K +  L + +  +    IK + + + 
Sbjct: 432 NEGAKYISELKELIYLYMNNNKIRNEGAKYISEMKQVTQLDIGNNYIGEEGIKYISEMKQ 491

Query: 397 LPNLVSFR 404
           L +L  ++
Sbjct: 492 LIHLEKYQ 499



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 131/264 (49%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I D   K LS L  L  L IS + + + G  Y+  L +L  LN+    +    L+   
Sbjct: 236 NHINDEGAKYLSELAQLTYLDISSNGLGNEGTKYISTLNQLEKLNISQNYIGDEGLEYFG 295

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L  L  L L+  ++  +G +  S++  L  L++ +N+I D+  ++   L  L +L +++
Sbjct: 296 KLSQLTSLELSNNKIGTEGAKYLSELKQLTQLDIEYNKIGDKGAMYFGELKQLVNLIINN 355

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             IG++G+  +  L  L  L++S+ ++G+ G++++  L  L  +N+S   I +   + + 
Sbjct: 356 NRIGNDGVKYIGELKQLIYLDISENRIGNEGIKYIGELKQLTDVNISENRIGNEGAKYIG 415

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
            LS L SL L    I + G   ++ L  L +L +   +I + GA Y+   K +  L+I  
Sbjct: 416 QLSQLTSLYLSNNNIGNEGAKYISELKELIYLYMNNNKIRNEGAKYISEMKQVTQLDIGN 475

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQ 332
             + + G+K+I ++  L  L   Q
Sbjct: 476 NYIGEEGIKYISEMKQLIHLEKYQ 499



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 10/150 (6%)

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           +GS + ++ L  L  L +DA  I D G+  ++ L  L +L +    I+D G  YLR  K 
Sbjct: 111 EGSAKFISELKQLTRLTIDASHIRDEGVRYISELKQLAYLSVHSNDISDDGVKYLRELKQ 170

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL---------ELISGLTGLV 351
           L +L I    +   G K I +L  LT L +  N ++ D+           + IS L  L 
Sbjct: 171 LTTLIIFSNRVGSEGCKCISELKQLTSLCIDDN-HINDEGANNRVGSEGCKCISELKQLT 229

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           SL + ++ I   G ++L  L  L  L + S
Sbjct: 230 SLCIDDNHINDEGAKYLSELAQLTYLDISS 259


>gi|430746590|ref|YP_007205719.1| hypothetical protein Sinac_5908 [Singulisphaera acidiphila DSM
           18658]
 gi|430018310|gb|AGA30024.1| hypothetical protein Sinac_5908 [Singulisphaera acidiphila DSM
           18658]
          Length = 506

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 184/370 (49%), Gaps = 23/370 (6%)

Query: 3   ENLSGLSNLTSLSFRRNNA--ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           EN+  L  +   + + + A  +T  GM     L  L  L +   T  HG L  L G  +L
Sbjct: 142 ENVGKLHGVEWFTIQGHAAPNLTPAGMAQLRTLSRLKGLSVRGFTDSHGFLAGLMGKTRL 201

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             L +     +TD +M  + GLT+L+ LQ+    VTD G A++  L++L+LL++ G  +T
Sbjct: 202 SHLRLPEA-AVTDDEMAIIGGLTDLEVLQLDGRNVTDRGFAHVANLKELSLLDMPGVRIT 260

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
                 L+ +  L  L++    LS D    F++     V + G        L  L+GLTN
Sbjct: 261 -----DLAPVTDLVQLDV--LGLSPDRA-TFAR----SVPSPG----GPSSLGPLRGLTN 304

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  L L +  I D  L    GL  L  L +   ++  +GL  L+   +L  +  + T I+
Sbjct: 305 LTQLTLGATQIEDRELAVAAGLPKLSYLMIGGRRITEAGLARLAESKSLTGLRFTDTSIA 364

Query: 241 DGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           D  LR L+  L +L  L ++   +TD GL  L+  T +  L + G+R+TD+G  +L    
Sbjct: 365 D--LRPLSPRLHALWGLYMENSALTDAGLEPLSDATRIGDLTITGSRMTDAGLHHLAPLP 422

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
           +L  L +    +TDAG+  +K L SL  L+L++   LTD ++E ++G   L SLN+  S 
Sbjct: 423 SLWKLRLGRSAITDAGLGRLKSLKSLETLSLTE-TKLTDSSVETLAGFQSLKSLNLDRSG 481

Query: 360 ITSAGLRHLK 369
           I+ AG+  LK
Sbjct: 482 ISPAGIERLK 491



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 144/316 (45%), Gaps = 22/316 (6%)

Query: 91  SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 150
           +   +T +G+A L+ L +L  L++ G   +   L  L     L +L L    ++DD    
Sbjct: 159 AAPNLTPAGMAQLRTLSRLKGLSVRGFTDSHGFLAGLMGKTRLSHLRLPEAAVTDDEMAI 218

Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
              +  L+VL L    +TD    H+  L  L  L++    I D  L  +T L  L  L L
Sbjct: 219 IGGLTDLEVLQLDGRNVTDRGFAHVANLKELSLLDMPGVRITD--LAPVTDLVQLDVLGL 276

Query: 211 SDTQV----------GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
           S  +           G S L  L GLTNL  + L  T I D  L   AGL  L  L +  
Sbjct: 277 SPDRATFARSVPSPGGPSSLGPLRGLTNLTQLTLGATQIEDRELAVAAGLPKLSYLMIGG 336

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR----NFKNLRSLEICGGGLTDAGV 316
           R+IT+ GLA L     LT     G R TD+  A LR        L  L +    LTDAG+
Sbjct: 337 RRITEAGLARLAESKSLT-----GLRFTDTSIADLRPLSPRLHALWGLYMENSALTDAGL 391

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
           + + D + +  L ++    +TD  L  ++ L  L  L +  S IT AGL  LK LK+L +
Sbjct: 392 EPLSDATRIGDLTIT-GSRMTDAGLHHLAPLPSLWKLRLGRSAITDAGLGRLKSLKSLET 450

Query: 377 LTLESCKVTANDIKRL 392
           L+L   K+T + ++ L
Sbjct: 451 LSLTETKLTDSSVETL 466



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 36  LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 95
           L  L +E       GL  L    ++  L I   + +TD+ +  L+ L +L  L++  S +
Sbjct: 376 LWGLYMENSALTDAGLEPLSDATRIGDLTIT-GSRMTDAGLHHLAPLPSLWKLRLGRSAI 434

Query: 96  TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
           TD+G+  LK L+ L  L+L    +T + +++L+   SL  LNL+R  +S  G E+  +
Sbjct: 435 TDAGLGRLKSLKSLETLSLTETKLTDSSVETLAGFQSLKSLNLDRSGISPAGIERLKQ 492


>gi|301118238|ref|XP_002906847.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262108196|gb|EEY66248.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 648

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 208/434 (47%), Gaps = 65/434 (14%)

Query: 5   LSGLSNLTSLSFRRNN--AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLE 61
           L+ L NL +L+    N  A+T  G+ A A + +L  L+L  C+++   G+ +L  L+KL 
Sbjct: 239 LARLKNLQTLNLWYCNQGALTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLR 298

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PV 119
            L I     +TD     L+ L NL +L ++ C  +TD+G   L    KL   NL  C  +
Sbjct: 299 HLEIANVGEVTDQGFLALAPLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEI 358

Query: 120 TAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL--GFNEITDECLVHLK 176
             A    + +L  + +LN  +C +++D G    +K+ +L  L++   FN +TDE L  L 
Sbjct: 359 GDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIAKLRNLTSLDMVSCFN-VTDEGLNELS 417

Query: 177 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 234
            L  L+SL L  C GI DEG+  L+ L +L  L+LS+  QVG+  L  +  L NL ++NL
Sbjct: 418 KLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLNL 477

Query: 235 -SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
                I D  +  LAGL+ LK+LNL + R +TD     +  +TGL  L L+         
Sbjct: 478 MRCNRIDDDGIAHLAGLTRLKTLNLANCRLLTDRATKTVAQMTGLESLVLWYC------- 530

Query: 293 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL--------- 343
                             LTDAG+ ++  L+ L  ++L+    LTD +LE          
Sbjct: 531 ----------------NKLTDAGILNLSTLTKLQSIDLASCSKLTDASLEAFLNMPNLTS 574

Query: 344 ----------------ISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVT 385
                           +S +T L SLN+S    IT  GL HLK L NL S+ L  C KVT
Sbjct: 575 LDLGNCCLLSDEGMLTLSKVTSLTSLNLSECGEITDTGLEHLKTLVNLSSVNLWYCTKVT 634

Query: 386 ANDIKRL--QSRDL 397
              I  L  QS D 
Sbjct: 635 PVGINFLPVQSVDF 648



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 178/350 (50%), Gaps = 19/350 (5%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQI-SCSKVTDSGI-AYLKGL 106
           L NL GL    S+ +K C  +TD  +K L  S   +L S+ +  C  V+D GI A    L
Sbjct: 161 LANLSGL---TSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGYCKVVSDEGITAIASNL 217

Query: 107 QKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ---LSDDGCEKFSKIGSLKVLNL 162
            KL  LNL GC  V    + +L+ L +L  LNL  C    L+D G    +++ SL  LNL
Sbjct: 218 SKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALTDGGISALAEVTSLTSLNL 277

Query: 163 G-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSG 219
              +++TDE +  L  L  L  L + + G + D+G + L  L NL  L+++    +  +G
Sbjct: 278 SNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPLVNLVTLDVAGCYNITDAG 337

Query: 220 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN-LDARQITDTGLAALTSLTGL 277
              L     L S NL + + I D + + +  L+ ++ LN +   ++TD GL ++  L  L
Sbjct: 338 TEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIAKLRNL 397

Query: 278 THLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 335
           T LD+     +TD G   L     L+SL + G  G+ D G+  +  LSSL +L+LS    
Sbjct: 398 TSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILDLSNCRQ 457

Query: 336 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKV 384
           + +K L  I  L  L +LN+   +RI   G+ HL  L  L++L L +C++
Sbjct: 458 VGNKALLGIGALRNLTNLNLMRCNRIDDDGIAHLAGLTRLKTLNLANCRL 507



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 109/198 (55%), Gaps = 24/198 (12%)

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG---ISDGSLRKL--AGLS 251
           VNLTG     C  L+D  V    L +LSGLT++     +  G   ++D S++ L  +  +
Sbjct: 145 VNLTG-----CSSLTDESV--EQLANLSGLTSV-----ALKGCYQVTDKSIKLLTESQSN 192

Query: 252 SLKSLNLD-ARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEIC- 307
           SL S+NL   + ++D G+ A+ S L+ L +L+L G +++ D+G   L   KNL++L +  
Sbjct: 193 SLTSVNLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWY 252

Query: 308 --GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAG 364
              G LTD G+  + +++SLT LNLS    LTD+ +  +S L  L  L ++N   +T  G
Sbjct: 253 CNQGALTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQG 312

Query: 365 LRHLKPLKNLRSLTLESC 382
              L PL NL +L +  C
Sbjct: 313 FLALAPLVNLVTLDVAGC 330


>gi|290979790|ref|XP_002672616.1| predicted protein [Naegleria gruberi]
 gi|284086194|gb|EFC39872.1| predicted protein [Naegleria gruberi]
          Length = 559

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 204/426 (47%), Gaps = 35/426 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESL 63
           +S +  LTSL    N  I  +G+K  + +  L  LD+  C  I   G  ++  + +L SL
Sbjct: 119 ISEMKQLTSLGIAENR-IGDEGVKFISEMKQLTLLDI-CCNEIGVEGATSISEMKQLTSL 176

Query: 64  NIKWCNCITD------SDMKPL------------------SGLTNLKSLQISCSKVTDSG 99
           NI   N I D      S+MK L                  S +  L SL IS +++   G
Sbjct: 177 NIS-GNRIGDEGAKLISEMKQLTLLNIADNRICVEGAKSISEMKQLTSLSISDNEIGVVG 235

Query: 100 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 159
              +  + +LTLLN+    +       +S +  L  L+++   +  +G +  S++  L  
Sbjct: 236 AKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDISNNLIDIEGAKSISEMKQLTS 295

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L + +NEI DE +  +  +  L SL++    IG  G  +++ +  L  L++   ++G  G
Sbjct: 296 LEIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMKQLTFLQIFSNRIGDEG 355

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
              +S +  L S+N+ +  I D  ++ ++ +  L SL++   QI   G  +++ +  LT 
Sbjct: 356 ANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDIGGNQIGVGGAKSISEMKQLTF 415

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L +F  RI D G  ++   K L SL I G  + D G K I ++  LTLL +S N  + D+
Sbjct: 416 LQIFSNRIGDEGVKFISEMKQLTSLNISGNRIGDEGAKSISEMKQLTLLYISSN-EIGDE 474

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TANDIKRLQ 393
            ++ IS +  L  L + ++RI   G++ +  +K L SL +   ++      + +++K+L 
Sbjct: 475 GVKFISEMKQLTLLQIYSNRIGDEGVKSISEMKQLTSLNISGNRIGDEGVKSISEMKQLT 534

Query: 394 SRDLPN 399
           S ++ N
Sbjct: 535 SLNISN 540



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 175/343 (51%), Gaps = 3/343 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S +  LTSLS   +N I   G K  + +  L  L++        G   +  + +L SL+
Sbjct: 215 ISEMKQLTSLSIS-DNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLD 273

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I     K +S +  L SL+I  +++ D G+ ++  +++LT L++ G  +     
Sbjct: 274 IS-NNLIDIEGAKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGA 332

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            S+S +  L +L +   ++ D+G    S++  L  LN+ +N+I DE +  +  +  L SL
Sbjct: 333 KSISEMKQLTFLQIFSNRIGDEGANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSL 392

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           ++    IG  G  +++ +  L  L++   ++G  G++ +S +  L S+N+S   I D   
Sbjct: 393 DIGGNQIGVGGAKSISEMKQLTFLQIFSNRIGDEGVKFISEMKQLTSLNISGNRIGDEGA 452

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + ++ +  L  L + + +I D G+  ++ +  LT L ++  RI D G   +   K L SL
Sbjct: 453 KSISEMKQLTLLYISSNEIGDEGVKFISEMKQLTLLQIYSNRIGDEGVKSISEMKQLTSL 512

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
            I G  + D GVK I ++  LT LN+S N  + D+ ++L++ L
Sbjct: 513 NISGNRIGDEGVKSISEMKQLTSLNISNN-RIGDEGVKLLTSL 554



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 174/374 (46%), Gaps = 48/374 (12%)

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           N+K+     D + K +S +  L SL I+ +++ D G+ ++  +++LTLL++    +    
Sbjct: 105 NVKFSVYSLD-NAKFISEMKQLTSLGIAENRIGDEGVKFISEMKQLTLLDICCNEIGVEG 163

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTN 180
             S+S +  L  LN++  ++ D+G +  S++  L +LN+  N I  E    +  +K LT+
Sbjct: 164 ATSISEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVEGAKSISEMKQLTS 223

Query: 181 LES---------------------LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L                       LN+ +  IGDEG   ++ +  L  L++S+  +   G
Sbjct: 224 LSISDNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDISNNLIDIEG 283

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
            + +S +  L S+ + +  I D  ++ ++ +  L SL++   QI   G  +++ +  LT 
Sbjct: 284 AKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMKQLTF 343

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC----- 334
           L +F  RI D GA  +   K L SL I    + D GVK I ++  LT L++  N      
Sbjct: 344 LQIFSNRIGDEGANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDIGGNQIGVGG 403

Query: 335 ------------------NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
                              + D+ ++ IS +  L SLN+S +RI   G + +  +K L  
Sbjct: 404 AKSISEMKQLTFLQIFSNRIGDEGVKFISEMKQLTSLNISGNRIGDEGAKSISEMKQLTL 463

Query: 377 LTLESCKVTANDIK 390
           L + S ++    +K
Sbjct: 464 LYISSNEIGDEGVK 477



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 121/251 (48%), Gaps = 4/251 (1%)

Query: 146 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
           D  +  S++  L  L +  N I DE +  +  +  L  L++    IG EG  +++ +  L
Sbjct: 114 DNAKFISEMKQLTSLGIAENRIGDEGVKFISEMKQLTLLDICCNEIGVEGATSISEMKQL 173

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
             L +S  ++G  G + +S +  L  +N++   I     + ++ +  L SL++   +I  
Sbjct: 174 TSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVEGAKSISEMKQLTSLSISDNEIGV 233

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
            G   ++ +  LT L++    I D GA ++   K L SL+I    +   G K I ++  L
Sbjct: 234 VGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDISNNLIDIEGAKSISEMKQL 293

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV- 384
           T L +  N  + D+ ++ IS +  L SL++S ++I   G + +  +K L  L + S ++ 
Sbjct: 294 TSLEIYYN-EIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMKQLTFLQIFSNRIG 352

Query: 385 --TANDIKRLQ 393
              AN I  ++
Sbjct: 353 DEGANSISEMK 363


>gi|217074836|gb|ACJ85778.1| unknown [Medicago truncatula]
          Length = 81

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 65/79 (82%), Positives = 72/79 (91%)

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387
           LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLRSLTLESCKVTAN
Sbjct: 3   LNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTAN 62

Query: 388 DIKRLQSRDLPNLVSFRPE 406
           DIK+ +   LPNLVSFRPE
Sbjct: 63  DIKKFKLIHLPNLVSFRPE 81



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 39/59 (66%)

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           LN+   + +TD  ++ ++GLT L SL +S +++T +G+ +LK L+ L  L LE C VTA
Sbjct: 3   LNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTA 61



 Score = 38.5 bits (88), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
           +TD  +  +  LT L  L+L   RIT +G  +L+  KNLRSL +    +T   +K  K
Sbjct: 11  LTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTANDIKKFK 68


>gi|406830574|ref|ZP_11090168.1| hypothetical protein SpalD1_03019 [Schlesneria paludicola DSM
           18645]
          Length = 404

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 145/299 (48%), Gaps = 27/299 (9%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
            TD+D+  L     L+SL +S ++++  GIA L  L+ LT+L+L   PV  A    L  L
Sbjct: 63  FTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKKLIEL 122

Query: 131 GSLFYLNLNRCQLSDD------------------------GCEKFSKIGSLKVLNLGFNE 166
            SL  L++   Q+SD                         G    SK G L +L+L    
Sbjct: 123 DSLTTLDVADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTR 182

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           ++DE +  LK L NL  L L    I D GL  + GL +LK L+L+ TQ+  +GL+HL GL
Sbjct: 183 VSDEGMTALKRLENLTELRLSGNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGL 242

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
            NL  + L    + D  +  L  + +L +L+  A QITD  L+AL  +  LT LDL    
Sbjct: 243 NNLNELKLGRNQVKDNGVNALVEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKNP 302

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           I+D G   L   +NL+ + +    +T +G+K  +D     L+      N TD+ +E  S
Sbjct: 303 ISDFGLRNLTRLRNLKEIGLVEAPVTASGLKRFQDAIGTPLI---ITWNGTDQDIEAAS 358



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 150/309 (48%), Gaps = 28/309 (9%)

Query: 88  LQISC---SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
           +QI C    + TD+ +  LK   +L  L+L G  ++   +  LS L SL  L+L    + 
Sbjct: 53  VQIDCRDAQEFTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVK 112

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
           +   +K  ++ SL  L++   +++D  L                     +G +      N
Sbjct: 113 NAQFKKLIELDSLTTLDVADTQVSDAAL---------------------QGSI---AHPN 148

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           L  L LS  ++ ++GL  LS    L  ++L+ T +SD  +  L  L +L  L L    IT
Sbjct: 149 LTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTRVSDEGMTALKRLENLTELRLSGNVIT 208

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 324
           DTGL A+  L+ L  LDL   +ITD+G  +LR   NL  L++    + D GV  + ++ +
Sbjct: 209 DTGLEAIGGLSHLKILDLTATQITDAGLKHLRGLNNLNELKLGRNQVKDNGVNALVEIPT 268

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           L  L+      +TD+ L  +  +  L +L++  + I+  GLR+L  L+NL+ + L    V
Sbjct: 269 LIALDFYA-TQITDECLSALGQIANLTTLDLGKNPISDFGLRNLTRLRNLKEIGLVEAPV 327

Query: 385 TANDIKRLQ 393
           TA+ +KR Q
Sbjct: 328 TASGLKRFQ 336



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 3/217 (1%)

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
           D+    D  +  L     L+ L+LS TQ+   G+  LS L +L  ++L+   + +   +K
Sbjct: 59  DAQEFTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKK 118

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           L  L SL +L++   Q++D  L    +   LT L L G RIT++G   L  F  L  L++
Sbjct: 119 LIELDSLTTLDVADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDL 178

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
               ++D G+  +K L +LT L LS N  +TD  LE I GL+ L  L+++ ++IT AGL+
Sbjct: 179 TQTRVSDEGMTALKRLENLTELRLSGNV-ITDTGLEAIGGLSHLKILDLTATQITDAGLK 237

Query: 367 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
           HL+ L NL  L L   +V  N +  L   ++P L++ 
Sbjct: 238 HLRGLNNLNELKLGRNQVKDNGVNALV--EIPTLIAL 272



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
           DA++ TD  +  L +   L  LDL G +I+  G A L   ++L  L +    + +A  K 
Sbjct: 59  DAQEFTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKK 118

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           + +L SLT L+++ +  ++D  L+       L +L +S +RIT+AGL  L     L  L 
Sbjct: 119 LIELDSLTTLDVA-DTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILD 177

Query: 379 LESCKVTANDIKRLQSRDLPNLVSFR 404
           L   +V+   +  L+   L NL   R
Sbjct: 178 LTQTRVSDEGMTALKR--LENLTELR 201



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L  L NLT L     N IT  G++A  GL +L  LDL        GL +L+GL  L  L 
Sbjct: 191 LKRLENLTELRLS-GNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGLNNLNELK 249

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N + D+ +  L  +  L +L    +++TD  ++ L  +  LT L+L   P++   L
Sbjct: 250 LG-RNQVKDNGVNALVEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKNPISDFGL 308

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFS 152
            +L+ L +L  + L    ++  G ++F 
Sbjct: 309 RNLTRLRNLKEIGLVEAPVTASGLKRFQ 336


>gi|149174540|ref|ZP_01853166.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148846650|gb|EDL60987.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 309

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 139/250 (55%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           + D+ +  L  L+ L+ L +S SKVTD G+ +LK L+ L  + L G PV+ + L     L
Sbjct: 50  LVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIPVSDSGLAEFKKL 109

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            +L  LNL+R +++D G +    + SLK L L   EIT + L HL GL +LE+L L    
Sbjct: 110 SNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLKSLETLGLSETQ 169

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           I D+ L +L  L  L+ L L DTQ+   GL+ + GLT L+ + L  T I+D  L+ L  +
Sbjct: 170 ITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKM 229

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
             ++ L L+  QIT+ G++ +  L  +  ++L    ++D     L+  KNL +L I G  
Sbjct: 230 KDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKKMKNLGTLYIDGTE 289

Query: 311 LTDAGVKHIK 320
           +T+ G+  ++
Sbjct: 290 ITEEGIAKLE 299



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/262 (35%), Positives = 145/262 (55%), Gaps = 2/262 (0%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 69
           N++ +SF  +  + A G+     L  L KLDL        G+V+LK L  L  + +    
Sbjct: 39  NISQVSFSGSKLVDA-GLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGI- 96

Query: 70  CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
            ++DS +     L+NL+ L +S +KVTD+G+ +LK L  L  L L G  +TA  L  LS 
Sbjct: 97  PVSDSGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSG 156

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
           L SL  L L+  Q++DD       +  L+VL L   +ITDE L  +KGLT L+ L L + 
Sbjct: 157 LKSLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNT 216

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
            I D+GL  L  + +++ LEL+DTQ+ ++G+  +  L N+  +NL  T +SD  +  L  
Sbjct: 217 QITDDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKK 276

Query: 250 LSSLKSLNLDARQITDTGLAAL 271
           + +L +L +D  +IT+ G+A L
Sbjct: 277 MKNLGTLYIDGTEITEEGIAKL 298



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 153/301 (50%), Gaps = 32/301 (10%)

Query: 84  NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 143
           N+  +  S SK+ D+G+ YL  L KL  L+L G  VT   +  L +L SL  + L+   +
Sbjct: 39  NISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIPV 98

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
           SD G  +F K                        L+NLE LNL    + D GL +L  L 
Sbjct: 99  SDSGLAEFKK------------------------LSNLEILNLSRTKVTDAGLKHLKSLD 134

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           +LK L L+  ++ + GL HLSGL +LE++ LS T I+D +L  L  L  L+ L L   QI
Sbjct: 135 SLKELFLTGLEITADGLAHLSGLKSLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQI 194

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
           TD GL  +  LT L  L L   +ITD G  YL   K++  LE+    +T+AG+  IK L 
Sbjct: 195 TDEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLE 254

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           ++  +NL +N +++DK +  +  +  L +L +  + IT  G+  L+        +L  C+
Sbjct: 255 NIVDMNL-RNTDVSDKCITSLKKMKNLGTLYIDGTEITEEGIAKLEK-------SLPYCR 306

Query: 384 V 384
           V
Sbjct: 307 V 307



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 146/268 (54%), Gaps = 2/268 (0%)

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
           G++  ++ +  +L D G     ++  L+ L+L  +++TD+ +VHLK L +L  + L    
Sbjct: 38  GNISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIP 97

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           + D GL     L NL+ L LS T+V  +GL+HL  L +L+ + L+   I+   L  L+GL
Sbjct: 98  VSDSGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGL 157

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
            SL++L L   QITD  LA L +L  L  L L   +ITD G   ++    L+ L +    
Sbjct: 158 KSLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQ 217

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           +TD G+K++  +  +  L L+ +  +T+  +  I  L  +V +N+ N+ ++   +  LK 
Sbjct: 218 ITDDGLKYLIKMKDMEWLELN-DTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKK 276

Query: 371 LKNLRSLTLESCKVTANDIKRLQSRDLP 398
           +KNL +L ++  ++T   I +L+ + LP
Sbjct: 277 MKNLGTLYIDGTEITEEGIAKLE-KSLP 303



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 63/104 (60%), Gaps = 1/104 (0%)

Query: 50  GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 109
           GL  +KGL +L+ L ++    ITD  +K L  + +++ L+++ +++T++GI+ +K L+ +
Sbjct: 198 GLKQIKGLTRLQRLWLR-NTQITDDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLENI 256

Query: 110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
             +NL    V+  C+ SL  + +L  L ++  +++++G  K  K
Sbjct: 257 VDMNLRNTDVSDKCITSLKKMKNLGTLYIDGTEITEEGIAKLEK 300


>gi|290973212|ref|XP_002669343.1| predicted protein [Naegleria gruberi]
 gi|284082889|gb|EFC36599.1| predicted protein [Naegleria gruberi]
          Length = 440

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 152/277 (54%), Gaps = 1/277 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SLNI + N + D   K LS +  L SL I  ++V   G  YL  +++LT LN+  
Sbjct: 142 MKQLTSLNIGY-NRVGDEGAKYLSEMKQLTSLNIGYNRVGIEGAKYLSEMEQLTSLNIGY 200

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +    +  +S +  L  LN+++ ++S++G +  S++  L++LN+  NEI DE + +L 
Sbjct: 201 SRIGIEGVKYISEMKQLTSLNISKNEVSNEGAKYLSEMKQLRLLNIYHNEIGDEGVKYLS 260

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            +  L SL++    IG EG+  ++ +  L  L++S+ ++   G ++LS +  L S+N+ +
Sbjct: 261 EMKQLTSLHIGYNRIGLEGVKLISEMEQLTSLDISENEISDEGAKYLSEMEQLTSLNIDY 320

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
           + I    ++ ++ +  L SL +   +I   G   ++ +  L  LD+    I+D GA YL 
Sbjct: 321 SRIGLEGVKYISEMKQLTSLTIAYNRIGIKGAKLISEMKQLRLLDISNNEISDEGAKYLS 380

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
             K L SL I   G+   GVK+I ++  L LL++++N
Sbjct: 381 EMKQLISLYISEIGIGIKGVKYISEMKQLRLLDITRN 417



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 149/290 (51%), Gaps = 1/290 (0%)

Query: 103 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162
           +  +++LT LN+    +    +  +S +  L  LN+   ++ D+G +  S++  L  LN+
Sbjct: 115 ISAMKQLTSLNIYDNGIGDEEIKYISEMKQLTSLNIGYNRVGDEGAKYLSEMKQLTSLNI 174

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
           G+N +  E   +L  +  L SLN+    IG EG+  ++ +  L  L +S  +V + G ++
Sbjct: 175 GYNRVGIEGAKYLSEMEQLTSLNIGYSRIGIEGVKYISEMKQLTSLNISKNEVSNEGAKY 234

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           LS +  L  +N+    I D  ++ L+ +  L SL++   +I   G+  ++ +  LT LD+
Sbjct: 235 LSEMKQLRLLNIYHNEIGDEGVKYLSEMKQLTSLHIGYNRIGLEGVKLISEMEQLTSLDI 294

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
               I+D GA YL   + L SL I    +   GVK+I ++  LT L ++ N  +  K  +
Sbjct: 295 SENEISDEGAKYLSEMEQLTSLNIDYSRIGLEGVKYISEMKQLTSLTIAYN-RIGIKGAK 353

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           LIS +  L  L++SN+ I+  G ++L  +K L SL +    +    +K +
Sbjct: 354 LISEMKQLRLLDISNNEISDEGAKYLSEMKQLISLYISEIGIGIKGVKYI 403


>gi|46447548|ref|YP_008913.1| hypothetical protein pc1914 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401189|emb|CAF24638.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 528

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/323 (35%), Positives = 178/323 (55%), Gaps = 13/323 (4%)

Query: 14  LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 72
           L+F  N  +T   + A     N+  L  ++C  +   GL +L  L  L+ L++ +C  +T
Sbjct: 199 LNFSENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYCENLT 258

Query: 73  DSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSAL 130
           D+ +  L  LT L+ L +S C  +TD+G+ +L  L  L  L+L  C  +T A L  L+ L
Sbjct: 259 DAGLAYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPL 318

Query: 131 GSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLD 187
            +L +L L+ C+ L+D G    + + +L+ L+L   +N +TD  L HL  LT L+ L L 
Sbjct: 319 TALQHLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYN-LTDASLSHLTPLTALQHLYLI 377

Query: 188 SC-GIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSF-TGISDGSL 244
            C  + D GL +LT L  L+ L+LS    +  +GL HL+ LT L+ +NLS    ++D  L
Sbjct: 378 GCENLTDAGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTDAGL 437

Query: 245 RKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLR 302
             L  L +L+ LNL + R +TD GLA LT LT L HLDL +   +TD+G A+L     L+
Sbjct: 438 AHLTTLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQ 497

Query: 303 SLEICG-GGLTDAGVKHIKDLSS 324
            L++     LTD G+   K L++
Sbjct: 498 HLDLSRCRRLTDDGLDRFKTLAT 520



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 172/341 (50%), Gaps = 34/341 (9%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 107
             L+ LK    +E L  K C  +TD+ +  L  L  L+ L +S C  +TD+G+AYLK L 
Sbjct: 210 AHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYCENLTDAGLAYLKPLT 269

Query: 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE- 166
            L  LNL GC                         L+D G    + +  L+ L+L + E 
Sbjct: 270 ALQHLNLSGC-----------------------WNLTDAGLVHLTPLVGLQHLDLSYCEN 306

Query: 167 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 224
           +TD  L HL  LT L+ L L  C  + D GL +L  L  L+ L+LS    +  + L HL+
Sbjct: 307 LTDAGLAHLTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLT 366

Query: 225 GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 282
            LT L+ + L     ++D  L  L  L++L+ L+L     +TD GL+ LT LTGL HL+L
Sbjct: 367 PLTALQHLYLIGCENLTDAGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNL 426

Query: 283 FG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
               ++TD+G A+L     L+ L +     LTDAG+ H+  L++L  L+L    NLTD  
Sbjct: 427 SRCYKLTDAGLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAG 486

Query: 341 LELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 380
           L  ++ LT L  L++S   R+T  GL   K L    SL LE
Sbjct: 487 LAHLTPLTALQHLDLSRCRRLTDDGLDRFKTLAT--SLNLE 525



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 173/339 (51%), Gaps = 32/339 (9%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 117
           K+E LN      +T++ +  L    N++ L    C  VTD+G+A+L  L+ L  L+L  C
Sbjct: 195 KIEVLNFSENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYC 254

Query: 118 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 176
                                    L+D G      + +L+ LNL G   +TD  LVHL 
Sbjct: 255 E-----------------------NLTDAGLAYLKPLTALQHLNLSGCWNLTDAGLVHLT 291

Query: 177 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 234
            L  L+ L+L  C  + D GL +LT L  L+ L LS  + +  +GL HL+ LT L+ ++L
Sbjct: 292 PLVGLQHLDLSYCENLTDAGLAHLTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDL 351

Query: 235 SF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RITDSG 291
           S    ++D SL  L  L++L+ L L     +TD GLA LT LT L HLDL     +TD+G
Sbjct: 352 SCCYNLTDASLSHLTPLTALQHLYLIGCENLTDAGLAHLTPLTALQHLDLSCCFNLTDAG 411

Query: 292 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
            ++L     L+ L +     LTDAG+ H+  L +L  LNLS+  +LTD  L  ++ LT L
Sbjct: 412 LSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLTAL 471

Query: 351 VSLNVSNS-RITSAGLRHLKPLKNLRSLTLESCKVTAND 388
             L++     +T AGL HL PL  L+ L L  C+   +D
Sbjct: 472 QHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRRLTDD 510



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 163/311 (52%), Gaps = 36/311 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESL 63
           L GL +L  LS+  N  +T  G+     L  L  L+L  C  +   GLV+L  L+ L+ L
Sbjct: 243 LKGLQHL-DLSYCEN--LTDAGLAYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHL 299

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTA 121
           ++ +C  +TD+ +  L+ LT L+ L +SC + +TD+G+A+L  L  L  L+L  C  +T 
Sbjct: 300 DLSYCENLTDAGLAHLTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTD 359

Query: 122 ACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGL 178
           A L  L+ L +L +L L  C+ L+D G    + + +L+ L+L   FN +TD  L HL  L
Sbjct: 360 ASLSHLTPLTALQHLYLIGCENLTDAGLAHLTPLTALQHLDLSCCFN-LTDAGLSHLTPL 418

Query: 179 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 236
           T L+ LNL  C  + D GL +LT L  L+ L LS+   +  +GL HL+ LT L+ ++L +
Sbjct: 419 TGLQHLNLSRCYKLTDAGLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKY 478

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYL 295
                              +NL     TD GLA LT LT L HLDL    R+TD G    
Sbjct: 479 ------------------CINL-----TDAGLAHLTPLTALQHLDLSRCRRLTDDGLDRF 515

Query: 296 RNFKNLRSLEI 306
           +      +LEI
Sbjct: 516 KTLATSLNLEI 526



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 102/285 (35%), Positives = 150/285 (52%), Gaps = 31/285 (10%)

Query: 107 QKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF 164
           +K+ +LN  E   +T A L +L    ++  L   +C+ ++D G      +  L+ L+L +
Sbjct: 194 KKIEVLNFSENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSY 253

Query: 165 NE-ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLR 221
            E +TD  L +LK LT L+ LNL  C  + D GLV+LT L  L+ L+LS  + +  +GL 
Sbjct: 254 CENLTDAGLAYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLA 313

Query: 222 HLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTH 279
           HL+ LT L+ + LS    ++D  L  LA L++L+ L+L     +TD  L+ LT LT L H
Sbjct: 314 HLTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQH 373

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L L G                          LTDAG+ H+  L++L  L+LS   NLTD 
Sbjct: 374 LYLIGCE-----------------------NLTDAGLAHLTPLTALQHLDLSCCFNLTDA 410

Query: 340 TLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
            L  ++ LTGL  LN+S   ++T AGL HL  L  L+ L L  C+
Sbjct: 411 GLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLVALQHLNLSECR 455


>gi|384245058|gb|EIE18554.1| L domain-like protein [Coccomyxa subellipsoidea C-169]
          Length = 731

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 206/367 (56%), Gaps = 15/367 (4%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + LS L++LTS++ +    ITAQG+ A +GL  ++ ++L+ C +I   L  L  L +L +
Sbjct: 342 QGLSLLTSLTSINMQECWQITAQGLAALSGLSRMMDVNLQGCRKI-SSLEPLASLSRLAA 400

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP--V 119
           LN++ C+ + DS + PLS L +L+SL +S C+ +T  G+  L  L  LT L L+ C    
Sbjct: 401 LNLRNCDGLGDSSLGPLSRLVSLRSLDLSGCTHLTGRGLLPLSSLTGLTALKLQHCAGIR 460

Query: 120 TAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEIT--DECLVHL 175
            +A L  LS L +L  LNL+ C Q    G    + +  L+ L+L G+  +T  D+ L+ L
Sbjct: 461 RSADLAPLSLLTALSTLNLSGCSQEEGAGISSLATLTCLRALSLDGWRHVTFIDDGLMAL 520

Query: 176 KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 233
             L  + SLNL  C  + D GL  +  + +L  + L D  Q+   G    +G+ +L S++
Sbjct: 521 TSLRGVASLNLQGCTSLTDVGLAAIGHMTSLTNVNLQDCRQITGEGFAGWAGMAHLTSLS 580

Query: 234 LS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDS 290
           L   + +SD     +A ++SL++LNL +   +TD  LAALT L  L HL L G  +++D+
Sbjct: 581 LQNASMVSDAGCCAIARITSLRTLNLKNCPALTDDCLAALTPLERLCHLRLQGNQQLSDA 640

Query: 291 GAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLT 348
             A+     +L+ LE      LTDAG+  +  L++L  L+LS    +TD+ +E L+  LT
Sbjct: 641 ALAHCARMPSLQHLETSNCWHLTDAGLTRLTALTTLAHLDLSYCWQVTDRGVEHLVKSLT 700

Query: 349 GLVSLNV 355
            LV+LNV
Sbjct: 701 TLVTLNV 707



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 182/369 (49%), Gaps = 55/369 (14%)

Query: 29  AFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 87
           + A L  L +LDL  C R  G  L   KGL  L+ LN+K C  I D+ ++ LS LT+L S
Sbjct: 293 SVAHLEQLTRLDLRACERFTGAELREWKGLSLLQELNLKGCYKIEDAGLQGLSLLTSLTS 352

Query: 88  LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSD 145
           + +  C ++T  G+A L GL ++  +NL+GC   ++ L+ L++L  L  LNL  C  L D
Sbjct: 353 INMQECWQITAQGLAALSGLSRMMDVNLQGCRKISS-LEPLASLSRLAALNLRNCDGLGD 411

Query: 146 DGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
                 S++ SL+ L+L G   +T   L+ L  LT L +L L  C     G+        
Sbjct: 412 SSLGPLSRLVSLRSLDLSGCTHLTGRGLLPLSSLTGLTALKLQHCA----GIRR------ 461

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLKSLNLDA-RQ 262
                       S+ L  LS LT L ++NLS     +G+ +  LA L+ L++L+LD  R 
Sbjct: 462 ------------SADLAPLSLLTALSTLNLSGCSQEEGAGISSLATLTCLRALSLDGWRH 509

Query: 263 IT--DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
           +T  D GL ALTSL G+  L+L G                          LTD G+  I 
Sbjct: 510 VTFIDDGLMALTSLRGVASLNLQGCT-----------------------SLTDVGLAAIG 546

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
            ++SLT +NL     +T +     +G+  L SL++ N S ++ AG   +  + +LR+L L
Sbjct: 547 HMTSLTNVNLQDCRQITGEGFAGWAGMAHLTSLSLQNASMVSDAGCCAIARITSLRTLNL 606

Query: 380 ESCKVTAND 388
           ++C    +D
Sbjct: 607 KNCPALTDD 615



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 188/368 (51%), Gaps = 28/368 (7%)

Query: 36  LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 93
           L +LD+  C R+ +  L NL+ L  L S+ +  C  +TD  +  LS L+ L SL +S C 
Sbjct: 96  LQQLDMSACRRVSNDELANLRHLPNLTSVVLAGCEDVTDEGLLHLSHLSRLASLNLSNCC 155

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSA-LGSLFYLNL----NRCQLSDDG 147
           KVTD G+  L  L++L  LNL GC  ++   L +++A L  L  L L        +SD  
Sbjct: 156 KVTDGGLLALAALRQLGSLNLSGCVSLSERGLAAIAARLRRLHTLKLGGTSRVATISDAS 215

Query: 148 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLV---NLTGL 202
               + + SL  L+L G ++ITD  L+HL  L+ L +L L +C  +  +GL     L  +
Sbjct: 216 VAAIAGLTSLTHLDLSGSHDITDAGLLHLGSLSRLRTLVLWNCMRVSVDGLAVFRQLPAV 275

Query: 203 CNLK---CLELSDTQVGSSGLRHLSGLTNLE-SINLSFTGISDGSLRKLAGLSSLKSLNL 258
            +L    C +LSD   GS  + HL  LT L+      FTG     LR+  GLS L+ LNL
Sbjct: 276 ADLSLRGCAQLSDALCGS--VAHLEQLTRLDLRACERFTG---AELREWKGLSLLQELNL 330

Query: 259 DA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
               +I D GL  L+ LT LT +++    +IT  G A L     +  + +  G    + +
Sbjct: 331 KGCYKIEDAGLQGLSLLTSLTSINMQECWQITAQGLAALSGLSRMMDVNL-QGCRKISSL 389

Query: 317 KHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNL 374
           + +  LS L  LNL +NC+ L D +L  +S L  L SL++S  + +T  GL  L  L  L
Sbjct: 390 EPLASLSRLAALNL-RNCDGLGDSSLGPLSRLVSLRSLDLSGCTHLTGRGLLPLSSLTGL 448

Query: 375 RSLTLESC 382
            +L L+ C
Sbjct: 449 TALKLQHC 456


>gi|325182005|emb|CCA16458.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 708

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 196/403 (48%), Gaps = 9/403 (2%)

Query: 7   GLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLN 64
           G SN L SL+      IT + + +   L  L  L L  C  I   GL +L GL  L+ L 
Sbjct: 308 GFSNRLISLNLTGCRLITDKTLYSLRHLFRLQNLHLSGCKWITEKGLQHLNGLFGLKRLY 367

Query: 65  IKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAA 122
           +  C  +++   +   +   NL  L +S   ++D  + +   L+++  L L+GC  +T  
Sbjct: 368 LARCVNVSNQAFRFFPTSFPNLVELDLSHCSISDIALHFTGRLREIHSLMLKGCSRITTK 427

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L  L +L  L  L++  C+      ++++++  LK+    F E     L  +K    L 
Sbjct: 428 GLSHLGSLSKLRRLDVRYCKHVAGLSKEWTQLDMLKLACTEFKEADASILATMK---TLH 484

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISD 241
            L+L  C +       ++ L +L  L +++T +    L  L   L  L+ +++S T ++D
Sbjct: 485 ELDLRCCLVAKGCFSFVSHLNSLVRLCVAETALTDESLIMLCKSLEKLQMLDVSCTEVTD 544

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
               ++  L  L  L+LD   IT+  L  +  L  L  L+LF A +TD G   L+    L
Sbjct: 545 SGTMEIEMLGELSELHLDTPGITNRSLERVGKLKKLARLNLFAASVTDEGVEALKRLDKL 604

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           + L+IC GG+   GVK +  L  L  LNLSQN  +  +++  +  LT L  LN+SN+ IT
Sbjct: 605 QDLDICSGGVGHRGVKALSQLKRLRSLNLSQNKEIRSQSVVHLEALTKLRFLNLSNTGIT 664

Query: 362 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           S+ L +L  LK L SL++    + ++ I  LQ  +LP+L   R
Sbjct: 665 SSCLHNLFALKELESLSVYGVVLESSQIDELQE-NLPHLKVLR 706


>gi|46447554|ref|YP_008919.1| hypothetical protein pc1920 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401195|emb|CAF24644.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 517

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 157/306 (51%), Gaps = 31/306 (10%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           K+E+LN      +TD+ +  L    NLK L + +C  +TD G+A+L  L  L  L+L  C
Sbjct: 226 KIEALNFSENAYLTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTALQHLDLSQC 285

Query: 118 -PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 174
             +T   L  L+ L +L +L+L+ C  L+D G    + + +L+ LNL   E +TD  LVH
Sbjct: 286 RKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVH 345

Query: 175 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 232
           L  L  L+ L+L  C  +   GL +L  L  L+ L+LS    +  +GL HL  L  L+ +
Sbjct: 346 LSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYL 405

Query: 233 NLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           NL +   ++D  L  L  L +L+ LNL +   +TD GL  LT LT L HLDL   R    
Sbjct: 406 NLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTALQHLDLSHCR---- 461

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
                               LTDAG+ H+  L+ L  L+LS   NLTD  L  ++ LTGL
Sbjct: 462 -------------------SLTDAGLAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTGL 502

Query: 351 VSLNVS 356
             L++S
Sbjct: 503 QHLDLS 508



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/244 (40%), Positives = 140/244 (57%), Gaps = 14/244 (5%)

Query: 150 KFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 205
           +FSK    K+  L F+E   +TD  L+ LK   NL+ L+L++C  I D+GL +LT L  L
Sbjct: 222 RFSK----KIEALNFSENAYLTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTAL 277

Query: 206 KCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQ 262
           + L+LS   ++   GL HL+ LT L+ ++LS    ++D  L  LA L++L+ LNL D   
Sbjct: 278 QHLDLSQCRKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCEN 337

Query: 263 ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIK 320
           +TD GL  L+ L  L HLDL +  R+  +G A+L+    L+ L++     LTDAG+ H+K
Sbjct: 338 LTDAGLVHLSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLAHLK 397

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
            L  L  LNL    NLTD  L  ++ L  L  LN+S    +T AGL HL PL  L+ L L
Sbjct: 398 PLMRLQYLNLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTALQHLDL 457

Query: 380 ESCK 383
             C+
Sbjct: 458 SHCR 461



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/280 (36%), Positives = 145/280 (51%), Gaps = 30/280 (10%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWC 68
           NL  L      AIT  G+     L  L  LDL +C ++ G GL +L  L  L+ L++  C
Sbjct: 251 NLKVLHLEACQAITDDGLAHLTPLTALQHLDLSQCRKLTGIGLAHLTPLTALQHLDLSGC 310

Query: 69  NCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDS 126
           + +TD+ +  L+ LT L+ L +S C  +TD+G+ +L  L  L  L+L  C  +  A L  
Sbjct: 311 DNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVHLSPLIALQHLDLSYCWRLNYAGLAH 370

Query: 127 LSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESL 184
           L  L +L YL+L+ C  L+D G      +  L+ LNL + E +TD  L HL  L  L+ L
Sbjct: 371 LKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYLNLRYCENLTDAGLAHLTPLMALQHL 430

Query: 185 NLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDG 242
           NL  C  + D GL +LT L  L+ L+LS  + +  +GL HL+ LT L+ ++LS+      
Sbjct: 431 NLSECYHLTDAGLTHLTPLTALQHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSY------ 484

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
                             + +TD GLA LT LTGL HLDL
Sbjct: 485 -----------------CKNLTDAGLARLTPLTGLQHLDL 507



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 13  SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCI 71
           S  +R N A    G+     L  L  LDL  C  +   GL +LK LM+L+ LN+++C  +
Sbjct: 358 SYCWRLNYA----GLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYLNLRYCENL 413

Query: 72  TDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSA 129
           TD+ +  L+ L  L+ L +S C  +TD+G+ +L  L  L  L+L  C  +T A L  L++
Sbjct: 414 TDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTALQHLDLSHCRSLTDAGLAHLTS 473

Query: 130 LGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG 163
           L  L YL+L+ C+ L+D G  + + +  L+ L+L 
Sbjct: 474 LTVLQYLDLSYCKNLTDAGLARLTPLTGLQHLDLS 508



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L  L  L  L+ R    +T  G+     L+ L  L+L  C  +   GL +L  L  L+ 
Sbjct: 395 HLKPLMRLQYLNLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTALQH 454

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 117
           L++  C  +TD+ +  L+ LT L+ L +S C  +TD+G+A L  L  L  L+L  C
Sbjct: 455 LDLSHCRSLTDAGLAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTGLQHLDLSRC 510


>gi|46446916|ref|YP_008281.1| hypothetical protein pc1282 [Candidatus Protochlamydia amoebophila
            UWE25]
 gi|46400557|emb|CAF24006.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila
            UWE25]
          Length = 1082

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/297 (36%), Positives = 155/297 (52%), Gaps = 31/297 (10%)

Query: 95   VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
            +TD+ +  LK  + L  L+L+ CP +T A L  L++L +L +L+L+ C            
Sbjct: 781  LTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYC------------ 828

Query: 154  IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 212
                       +  TD  L HL+ L  L  LNL  C  + D GL +LT L  LK L+LS 
Sbjct: 829  -----------SNFTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSY 877

Query: 213  -TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA 269
             +    +GL HL+ L  L+ ++LS  +  +D  L  L  L +L  LNL      TD GLA
Sbjct: 878  CSNFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLA 937

Query: 270  ALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 327
             LT L  L HL+L    ++TD+G A+LR    L++L++      TDAG+ H+  L  L  
Sbjct: 938  HLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQH 997

Query: 328  LNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
            L+LS    LTD  L  ++ L  L  L++S  + +T AGLRHL PL  L+ L L SC+
Sbjct: 998  LDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCE 1054



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 150/282 (53%), Gaps = 9/282 (3%)

Query: 10   NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWC 68
            NL +L  +    +T  G+     L+ L  LDL  C+     GL +L+ L+ L  LN++WC
Sbjct: 794  NLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLRPLVALTHLNLRWC 853

Query: 69   NCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDS 126
              +TD+ +  L+ L  LK L +S CS  TD+G+ +L  L  L  L+L  C   T A L  
Sbjct: 854  RNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAH 913

Query: 127  LSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESL 184
            L  L +L +LNL  C   +D G    + + +L+ LNL    ++TD  L HL+ L  L++L
Sbjct: 914  LRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNL 973

Query: 185  NLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISD 241
            +L  C    D GL +LT L  L+ L+LS   ++  +GL HL+ L  L+ ++LS+   ++D
Sbjct: 974  DLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTD 1033

Query: 242  GSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 282
              LR L  L +L+ L L +    T+ GLA   S     HL+L
Sbjct: 1034 AGLRHLTPLLALQDLYLYSCENFTEVGLAHFKSSVASLHLNL 1075



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 156/303 (51%), Gaps = 41/303 (13%)

Query: 49   GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 107
              L+ LK    L++L+++ C  +TD+ +  L+ L  L+ L +S CS  TD+G+A+L+ L 
Sbjct: 784  AHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLRPLV 843

Query: 108  KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF- 164
             LT LNL  C  +T A L  L+ L +L YL+L+ C   +D G    + + +L+ L+L   
Sbjct: 844  ALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCC 903

Query: 165  NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK------CLELSDTQVGS 217
            +  TD  L HL+ L  L  LNL  C    D GL +LT L  L+      C +L+D     
Sbjct: 904  SNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTD----- 958

Query: 218  SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 275
            +GL HL  L  L++++LS+ +  +D  L  L  L  L+ L+L + +++TD GLA LT L 
Sbjct: 959  AGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLV 1018

Query: 276  GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
             L HLDL                        C   LTDAG++H+  L +L  L L    N
Sbjct: 1019 ALQHLDL----------------------SWCNH-LTDAGLRHLTPLLALQDLYLYSCEN 1055

Query: 336  LTD 338
             T+
Sbjct: 1056 FTE 1058



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 129/245 (52%), Gaps = 10/245 (4%)

Query: 149  EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 204
            EK  K  S ++  L F++   +TD  L+ LK   NL++L+L  C  + D GL +LT L  
Sbjct: 760  EKVLKYFSNEIEELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVT 819

Query: 205  LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 261
            L+ L+LS  +    +GL HL  L  L  +NL +   ++D  L  L  L +LK L+L    
Sbjct: 820  LQHLDLSYCSNFTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCS 879

Query: 262  QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 319
              TD GL  LT L  L HLDL   +  TD+G A+LR    L  L +      TDAG+ H+
Sbjct: 880  NFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHL 939

Query: 320  KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 378
              L +L  LNL+    LTD  L  +  L  L +L++S  S  T AGL HL PL  L+ L 
Sbjct: 940  TPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLD 999

Query: 379  LESCK 383
            L SCK
Sbjct: 1000 LSSCK 1004



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 2/98 (2%)

Query: 22   ITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 80
             T  G+     L+ L  LDL  C ++   GL +L  L+ L+ L++ WCN +TD+ ++ L+
Sbjct: 981  FTDAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLT 1040

Query: 81   GLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 117
             L  L+ L + SC   T+ G+A+ K       LNL+ C
Sbjct: 1041 PLLALQDLYLYSCENFTEVGLAHFKSSVASLHLNLKWC 1078


>gi|290999929|ref|XP_002682532.1| predicted protein [Naegleria gruberi]
 gi|284096159|gb|EFC49788.1| predicted protein [Naegleria gruberi]
          Length = 339

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 144/297 (48%), Gaps = 1/297 (0%)

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           +  LSGL  LKSL I  S++   G+ Y+  L++LT L++    +       LS L  L  
Sbjct: 44  VHHLSGLKQLKSLHIYGSQIRGEGVRYISELKQLTNLDIRSHNIFHIGAKYLSELKQLTT 103

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           LN+    +   G +  S++  L  L +  N I  E   +L  L  L +L +    +G+EG
Sbjct: 104 LNIYGNHIGAKGSKYISELNQLTTLFIAENSIGVEGAKYLSELKQLTNLGISVNWLGNEG 163

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           L  ++ +  L  L++S   +G+ G +HL  L  L  +N+S   I D  L  +  L  L +
Sbjct: 164 LAYVSKIKQLTILDISHNDIGAEGGKHLGELKQLTLLNISHNKIQDEGLENIGKLKQLTT 223

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L ++   I   G   L+ L  LT L++   RI D G+ Y+   K L  L I    + + G
Sbjct: 224 LIINQNDIGAEGAQYLSELKQLTFLNISDNRIGDEGSKYIGELKQLVDLYINDNDIGEEG 283

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 372
            K+++DL  L  LN+  N    D+  + IS L  L  L+++N+ I   G +HL  +K
Sbjct: 284 AKYLRDLKQLIYLNVGGN-EFGDEGAKYISELKQLTKLDINNNSIGDEGTKHLSEMK 339



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 145/321 (45%), Gaps = 26/321 (8%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
             +LSGL  L SL     + I  +G++  + L  L  LD+      H G   L  L +L 
Sbjct: 44  VHHLSGLKQLKSLHIY-GSQIRGEGVRYISELKQLTNLDIRSHNIFHIGAKYLSELKQLT 102

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +LNI + N I     K +S L  L +L I+ + +   G  YL  L++LT L +       
Sbjct: 103 TLNI-YGNHIGAKGSKYISELNQLTTLFIAENSIGVEGAKYLSELKQLTNLGI------- 154

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
               S++ LG             ++G    SKI  L +L++  N+I  E   HL  L  L
Sbjct: 155 ----SVNWLG-------------NEGLAYVSKIKQLTILDISHNDIGAEGGKHLGELKQL 197

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             LN+    I DEGL N+  L  L  L ++   +G+ G ++LS L  L  +N+S   I D
Sbjct: 198 TLLNISHNKIQDEGLENIGKLKQLTTLIINQNDIGAEGAQYLSELKQLTFLNISDNRIGD 257

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
              + +  L  L  L ++   I + G   L  L  L +L++ G    D GA Y+   K L
Sbjct: 258 EGSKYIGELKQLVDLYINDNDIGEEGAKYLRDLKQLIYLNVGGNEFGDEGAKYISELKQL 317

Query: 302 RSLEICGGGLTDAGVKHIKDL 322
             L+I    + D G KH+ ++
Sbjct: 318 TKLDINNNSIGDEGTKHLSEM 338


>gi|168701995|ref|ZP_02734272.1| hypothetical protein GobsU_20883 [Gemmata obscuriglobus UQM 2246]
          Length = 684

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 170/383 (44%), Gaps = 78/383 (20%)

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           +G + L  +N+     + D D+  L+G T L  L +  ++VTD+ + YLK L +L  L+L
Sbjct: 279 QGPLALARVNLS-DRSVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSL 337

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
            G  VT                        D G  +  +  SL  L+L   ++T+  LVH
Sbjct: 338 TGTDVT------------------------DAGLARIRERKSLTTLHLSSTKVTNAGLVH 373

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L GL  L  ++LD  G+ D GLV+L GL +LK L LS T+V   GL H      L+++ L
Sbjct: 374 LAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKTLGLSRTRVLGPGLAHTHSWKRLDALYL 433

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           + TG++D +   L+   +L+ L  D   +TD G+A +  LTGL  L+L    + D+G   
Sbjct: 434 TNTGVTDEAFAHLSPHHTLRHLGADGTGLTDAGMAHVRHLTGLISLNLSDTAVGDAGLMQ 493

Query: 295 L-----------RNFK-NLRSLE--------------------------------ICGGG 310
           L           RN K  LR L                                   GG 
Sbjct: 494 LGSNAGPTHLTVRNTKVTLRGLHAFHATGPWRTVTWDGGQLGPTEADRSAARWALAAGGR 553

Query: 311 LTDAGVKH--------IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           L  +GV +         K    +T L L+    ++D  L  +  LTG+  L+++ S IT+
Sbjct: 554 LRVSGVPNEIVAAGELPKRKFVVTELALN-GLAVSDTELAALKYLTGMSRLDLAGSAITN 612

Query: 363 AGLRHLKPLKNLRSLTLESCKVT 385
            GL HLK L  LR L L   +VT
Sbjct: 613 DGLAHLKGLTGLRRLGLSETRVT 635



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 129/264 (48%), Gaps = 1/264 (0%)

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  +NL+   + DD   + +    L  L L    +TD  L +LK L  L+ L+L    +
Sbjct: 283 ALARVNLSDRSVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSLTGTDV 342

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D GL  +    +L  L LS T+V ++GL HL+GL  L  I+L  TG+SD  L  L GL+
Sbjct: 343 TDAGLARIRERKSLTTLHLSSTKVTNAGLVHLAGLAGLSHIHLDGTGVSDAGLVHLKGLT 402

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            LK+L L   ++   GLA   S   L  L L    +TD   A+L     LR L   G GL
Sbjct: 403 DLKTLGLSRTRVLGPGLAHTHSWKRLDALYLTNTGVTDEAFAHLSPHHTLRHLGADGTGL 462

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
           TDAG+ H++ L+ L  LNLS    + D  L  +    G   L V N+++T  GL      
Sbjct: 463 TDAGMAHVRHLTGLISLNLSDTA-VGDAGLMQLGSNAGPTHLTVRNTKVTLRGLHAFHAT 521

Query: 372 KNLRSLTLESCKVTANDIKRLQSR 395
              R++T +  ++   +  R  +R
Sbjct: 522 GPWRTVTWDGGQLGPTEADRSAAR 545



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 167/368 (45%), Gaps = 54/368 (14%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
             + D+D+  L     L  + +  +KVTD+G+A+LKGL  L  LNL    VT A L  L+
Sbjct: 49  RAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYSGVTDAGLADLN 108

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
           A   L  L +    +SD G     ++ +L  ++L   ++T   L HLK      +L L  
Sbjct: 109 AFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLK-GLKGLTLLLSG 167

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL- 247
             + D  L  L GL  +  L LSDT +  +GL HL  L  L ++++  T  +  SL +L 
Sbjct: 168 TALTDANLCYLKGLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRATPASLAELH 227

Query: 248 ---------------------------------------------------AGLSSLKSL 256
                                                               G  +L  +
Sbjct: 228 KSVPGCRIRDSAGDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLPQGPLALARV 287

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
           NL  R + D  L  L   TGLT L L   R+TD+   YL+N   L+ L + G  +TDAG+
Sbjct: 288 NLSDRSVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSLTGTDVTDAGL 347

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
             I++  SLT L+LS +  +T+  L  ++GL GL  +++  + ++ AGL HLK L +L++
Sbjct: 348 ARIRERKSLTTLHLS-STKVTNAGLVHLAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKT 406

Query: 377 LTLESCKV 384
           L L   +V
Sbjct: 407 LGLSRTRV 414



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 186/436 (42%), Gaps = 57/436 (13%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           +T  G+    GL NL  L+L        GL +L     L SL ++    ++D+ +     
Sbjct: 75  VTDAGLAHLKGLSNLAHLNLAYSGVTDAGLADLNAFPLLTSLWVQ-GTTVSDAGLAVARE 133

Query: 82  LTNLKSLQISCSKVTDSGIA-----------------------YLKGLQKLTLLNLEGCP 118
           L  L  + +S +KVT  G+A                       YLKGL  +  L+L   P
Sbjct: 134 LPALTHIDLSGTKVTGPGLAHLKGLKGLTLLLSGTALTDANLCYLKGLTGVVELSLSDTP 193

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSD----------DGCEKFSKIGSLKVLNLGFNEIT 168
           +T A L  L  L +L  L++ + + +            GC      G    L++  N + 
Sbjct: 194 LTDAGLSHLHDLKALGTLDVRKTRATPASLAELHKSVPGCRIRDSAGDRPPLDV--NRLA 251

Query: 169 DECLVHL--------------------KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
            E ++ +                    +G   L  +NL    + D+ L  L G   L  L
Sbjct: 252 AEWVLSVGGSVGVSGQPRDIRAAADLPQGPLALARVNLSDRSVKDDDLGRLAGCTGLTEL 311

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
            L +T+V  + L +L  L  L+ ++L+ T ++D  L ++    SL +L+L + ++T+ GL
Sbjct: 312 VLHETRVTDAALGYLKNLARLQFLSLTGTDVTDAGLARIRERKSLTTLHLSSTKVTNAGL 371

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
             L  L GL+H+ L G  ++D+G  +L+   +L++L +    +   G+ H      L  L
Sbjct: 372 VHLAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKTLGLSRTRVLGPGLAHTHSWKRLDAL 431

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
            L+ N  +TD+    +S    L  L    + +T AG+ H++ L  L SL L    V    
Sbjct: 432 YLT-NTGVTDEAFAHLSPHHTLRHLGADGTGLTDAGMAHVRHLTGLISLNLSDTAVGDAG 490

Query: 389 IKRLQSRDLPNLVSFR 404
           + +L S   P  ++ R
Sbjct: 491 LMQLGSNAGPTHLTVR 506



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 102/213 (47%), Gaps = 26/213 (12%)

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L + +L    + D  L  L     L  + L  T+V  +GL HL GL+NL  +NL+++G++
Sbjct: 41  LTAADLTDRAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYSGVT 100

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           D  L  L     L SL +    ++D GLA    L  LTH+DL G ++T  G A+L     
Sbjct: 101 DAGLADLNAFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHL-KGLK 159

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
             +L + G  LTDA + ++K                         GLTG+V L++S++ +
Sbjct: 160 GLTLLLSGTALTDANLCYLK-------------------------GLTGVVELSLSDTPL 194

Query: 361 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
           T AGL HL  LK L +L +   + T   +  L 
Sbjct: 195 TDAGLSHLHDLKALGTLDVRKTRATPASLAELH 227



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 141/339 (41%), Gaps = 54/339 (15%)

Query: 85  LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
           L +  ++   V D+ +A LK  Q LT + L G  VT A L  L  L +L +LNL      
Sbjct: 41  LTAADLTDRAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNL------ 94

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
                              ++ +TD  L  L     L SL +    + D GL     L  
Sbjct: 95  ------------------AYSGVTDAGLADLNAFPLLTSLWVQGTTVSDAGLAVARELPA 136

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           L  ++LS T+V   GL HL       ++ LS T ++D +L  L GL+ +  L+L    +T
Sbjct: 137 LTHIDLSGTKVTGPGLAHLK-GLKGLTLLLSGTALTDANLCYLKGLTGVVELSLSDTPLT 195

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICG--------------- 308
           D GL+ L  L  L  LD+   R T +  A L ++    R  +  G               
Sbjct: 196 DAGLSHLHDLKALGTLDVRKTRATPASLAELHKSVPGCRIRDSAGDRPPLDVNRLAAEWV 255

Query: 309 --------GGLTDAGVKHIKDLS----SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
                          ++   DL     +L  +NLS   ++ D  L  ++G TGL  L + 
Sbjct: 256 LSVGGSVGVSGQPRDIRAAADLPQGPLALARVNLSDR-SVKDDDLGRLAGCTGLTELVLH 314

Query: 357 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 395
            +R+T A L +LK L  L+ L+L    VT   + R++ R
Sbjct: 315 ETRVTDAALGYLKNLARLQFLSLTGTDVTDAGLARIRER 353


>gi|290985427|ref|XP_002675427.1| predicted protein [Naegleria gruberi]
 gi|284089023|gb|EFC42683.1| predicted protein [Naegleria gruberi]
          Length = 324

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 159/322 (49%), Gaps = 26/322 (8%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SLNI   N I D + K +S +  L SL IS + + D G   +  +++LT LN+  
Sbjct: 24  MKQLISLNI-GKNEIGDEEAKLISEMKQLTSLNISDNLIGDEGAKLISEMKQLTSLNICC 82

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +       LS +  L  LN+   ++ D+G +  S+   L  LN+GF +I         
Sbjct: 83  NRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISETRQLTSLNIGFTQI--------- 133

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
                          G EG   ++ +  L  L++SD  +G  G + +S +  L S+N+S 
Sbjct: 134 ---------------GGEGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISD 178

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I D   + ++ +  L SLN+   QI   G+  ++ +  LT LD+   +I D GA  + 
Sbjct: 179 NLIGDEGAKLISEMKQLTSLNISNNQIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLIS 238

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
             K L SL I G  + D G K + ++  L  L++S N  + D+  +LIS +  L+SLN+ 
Sbjct: 239 EMKQLTSLNISGNRIGDEGAKSMSEMKQLKSLDISYN-QIGDEGTKLISEMKQLISLNIR 297

Query: 357 NSRITSAGLRHLKPLKNLRSLT 378
            +RI   G+++++ +K L SLT
Sbjct: 298 ANRIGDEGVKYIREMKQLTSLT 319



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 126/252 (50%), Gaps = 1/252 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SLNI  CN I     K LS +  L SL I  +++ D G   +   ++LT LN+  
Sbjct: 72  MKQLTSLNI-CCNRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISETRQLTSLNIGF 130

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +       +S +  L  L+++   +  +G +  S++  L  LN+  N I DE    + 
Sbjct: 131 TQIGGEGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISDNLIGDEGAKLIS 190

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            +  L SLN+ +  IG EG+  ++ +  L  L++S+ Q+G  G + +S +  L S+N+S 
Sbjct: 191 EMKQLTSLNISNNQIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLISEMKQLTSLNISG 250

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I D   + ++ +  LKSL++   QI D G   ++ +  L  L++   RI D G  Y+R
Sbjct: 251 NRIGDEGAKSMSEMKQLKSLDISYNQIGDEGTKLISEMKQLISLNIRANRIGDEGVKYIR 310

Query: 297 NFKNLRSLEICG 308
             K L SL   G
Sbjct: 311 EMKQLTSLTYKG 322



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 139/275 (50%), Gaps = 4/275 (1%)

Query: 106 LQKLTLLNLEGCPV-TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
           +++LT L++ G  +   A L  +S +  L  LN+ + ++ D+  +  S++  L  LN+  
Sbjct: 1   MKQLTSLDISGNGIGDEAKL--ISEMKQLISLNIGKNEIGDEEAKLISEMKQLTSLNISD 58

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           N I DE    +  +  L SLN+    IG EG   L+ +  L  L + + ++G  G + +S
Sbjct: 59  NLIGDEGAKLISEMKQLTSLNICCNRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLIS 118

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
               L S+N+ FT I     + ++ +  L SL++    I   G   ++ +  LT L++  
Sbjct: 119 ETRQLTSLNIGFTQIGGEGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISD 178

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             I D GA  +   K L SL I    +   GVK I ++  LT L++S N  + D+  +LI
Sbjct: 179 NLIGDEGAKLISEMKQLTSLNISNNQIGGEGVKLISEMKQLTSLDISNN-QIGDEGAKLI 237

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           S +  L SLN+S +RI   G + +  +K L+SL +
Sbjct: 238 SEMKQLTSLNISGNRIGDEGAKSMSEMKQLKSLDI 272



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 7/259 (2%)

Query: 146 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
           D  +  S++  L  LN+G NEI DE    +  +  L SLN+    IGDEG   ++ +  L
Sbjct: 16  DEAKLISEMKQLISLNIGKNEIGDEEAKLISEMKQLTSLNISDNLIGDEGAKLISEMKQL 75

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
             L +   ++G  G ++LS +  L S+N+    I D   + ++    L SLN+   QI  
Sbjct: 76  TSLNICCNRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISETRQLTSLNIGFTQIGG 135

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
            G   ++ +  LT LD+    I   GA ++   K L SL I    + D G K I ++  L
Sbjct: 136 EGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISDNLIGDEGAKLISEMKQL 195

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV- 384
           T LN+S N  +  + ++LIS +  L SL++SN++I   G + +  +K L SL +   ++ 
Sbjct: 196 TSLNISNN-QIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLISEMKQLTSLNISGNRIG 254

Query: 385 -----TANDIKRLQSRDLP 398
                + +++K+L+S D+ 
Sbjct: 255 DEGAKSMSEMKQLKSLDIS 273


>gi|46445970|ref|YP_007335.1| hypothetical protein pc0336 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399611|emb|CAF23060.1| hypothetical protein pc0336 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 602

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 114/296 (38%), Positives = 168/296 (56%), Gaps = 10/296 (3%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESL 63
           L    NL  L  +R + +T  G+   A L+ L  LDL  C  +   GL +L  LM L+ L
Sbjct: 304 LKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAGLAHLTPLMALQHL 363

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTA 121
           N+ +C  +TD+ +  L+ L  L+ L +S C  +TD+G+A+L  L  L  L L  C  +T 
Sbjct: 364 NLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAHLTPLMALQHLGLSACDKLTD 423

Query: 122 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 179
           A L  L+ L +L YL+LN C +L+D G    + + +L  LNL + +++TD  L HL  L 
Sbjct: 424 AGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLTPLV 483

Query: 180 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF- 236
            L+ LNL  C  + D GL +LT L  L+ L+L+   ++  +GL HL+ L NL  +NLS+ 
Sbjct: 484 ALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYC 543

Query: 237 TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGA-RITDS 290
             ++D  L  L  L +L+ LNL   R++TD GLA L SL  L HLDL G  ++TD+
Sbjct: 544 RKLTDVGLAHLTPLVALQHLNLSCCRKLTDAGLAHLASLLALQHLDLSGCDKLTDA 599



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 173/302 (57%), Gaps = 10/302 (3%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKL 109
           L+ LK    L+ L ++ C+ +TD+ +  L+ L  L+ L +S C+ +TD+G+A+L  L  L
Sbjct: 301 LLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAGLAHLTPLMAL 360

Query: 110 TLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NE 166
             LNL  C  +T A L  L+ L +L YL+L+ C  L+D G    + + +L+ L L   ++
Sbjct: 361 QHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAHLTPLMALQHLGLSACDK 420

Query: 167 ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 224
           +TD  L HL  L  L+ L+L+ C  + D GL +LT L  L  L LS   ++  +GL HL+
Sbjct: 421 LTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLT 480

Query: 225 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 282
            L  L+ +NL +   ++D  L  L  L +L+ L+L+   ++TD GLA LTSL  L HL+L
Sbjct: 481 PLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNL 540

Query: 283 -FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
            +  ++TD G A+L     L+ L + C   LTDAG+ H+  L +L  L+LS    LTD  
Sbjct: 541 SYCRKLTDVGLAHLTPLVALQHLNLSCCRKLTDAGLAHLASLLALQHLDLSGCDKLTDAV 600

Query: 341 LE 342
           LE
Sbjct: 601 LE 602



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 160/309 (51%), Gaps = 31/309 (10%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 117
           ++E L+    + +TD+ +  L    NLK L +  C  +TD+G+A+L  L  L  L+L  C
Sbjct: 284 EIERLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSEC 343

Query: 118 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 174
             +T A L  L+ L +L +LNL+ C+ L+D G    + + +L+ L+L G + +TD  L H
Sbjct: 344 NNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAH 403

Query: 175 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 232
           L  L  L+ L L +C  + D GL +LT L  L+ L L+   ++   GL HL+ L  L  +
Sbjct: 404 LTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHL 463

Query: 233 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDS 290
           NLS+   ++D  L  L  L +L+ LNL   R++TD GLA LT L  L HLDL        
Sbjct: 464 NLSWCDKLTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDL-------- 515

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
                           C   LTDAG+ H+  L +L  LNLS    LTD  L  ++ L  L
Sbjct: 516 --------------NRCPK-LTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLTPLVAL 560

Query: 351 VSLNVSNSR 359
             LN+S  R
Sbjct: 561 QHLNLSCCR 569



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 113/224 (50%), Gaps = 28/224 (12%)

Query: 165 NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 222
           N +TD  L HL  L  L+ LNL  C  + D GL +LT L  L+ L+LS    +  +GL H
Sbjct: 344 NNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAH 403

Query: 223 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHL 280
           L+ L  L+ + LS    ++D  L  L  L +L+ L+L+   ++TD GLA LT L  LTHL
Sbjct: 404 LTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHL 463

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
           +L                        C   LTDAG+ H+  L +L  LNL     LTD  
Sbjct: 464 NL----------------------SWCDK-LTDAGLAHLTPLVALQHLNLRWCRKLTDAG 500

Query: 341 LELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
           L  ++ L  L  L+++   ++T AGL HL  L NLR L L  C+
Sbjct: 501 LAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCR 544



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 80/142 (56%), Gaps = 3/142 (2%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L+ L  L  LS    + +T  G+     L+ L  L+L  C ++   GL +L  L+ L+ 
Sbjct: 428 HLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLTPLVALQH 487

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 120
           LN++WC  +TD+ +  L+ L  L+ L ++ C K+TD+G+A+L  L  L  LNL  C  +T
Sbjct: 488 LNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCRKLT 547

Query: 121 AACLDSLSALGSLFYLNLNRCQ 142
              L  L+ L +L +LNL+ C+
Sbjct: 548 DVGLAHLTPLVALQHLNLSCCR 569



 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 2/98 (2%)

Query: 287 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           +TD+    L+N KNL+ L +     LTDAG+ H+  L +L  L+LS+  NLTD  L  ++
Sbjct: 296 LTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAGLAHLT 355

Query: 346 GLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 382
            L  L  LN+S  + +T AGL HL PL  L+ L L  C
Sbjct: 356 PLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGC 393


>gi|42567079|ref|NP_194115.3| leucine-rich repeat-containing protein [Arabidopsis thaliana]
 gi|20466546|gb|AAM20590.1| unknown protein [Arabidopsis thaliana]
 gi|22136448|gb|AAM91302.1| unknown protein [Arabidopsis thaliana]
 gi|51971383|dbj|BAD44356.1| putative protein [Arabidopsis thaliana]
 gi|332659411|gb|AEE84811.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 138/446 (30%), Positives = 215/446 (48%), Gaps = 71/446 (15%)

Query: 14  LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCIT 72
           +  R  +++ A+ M    G +NL+ L+L  C RI+   L  + GL  L  L++  C  +T
Sbjct: 66  IDLRGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRCFKVT 125

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           D+ MK L  + NLK L IS + VT+ GI+ L  L+KL+LL+L G PVT   L SL AL  
Sbjct: 126 DAGMKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQALTK 185

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L YL++    +++ G     K  +L  LNL +  IT         + +LE L++++C I 
Sbjct: 186 LEYLDIWGSNVTNQGAVSILKFSNLSFLNLSWTSIT-----QTPNIPHLECLHMNTCTIV 240

Query: 193 DEGLVNLTGLCNLKCLELS------DTQ--------------VGSSGLRHLSGLT---NL 229
            E   + + L +LK L LS      +T+              V  + L++ S L    NL
Sbjct: 241 SEPKTH-SSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNL 299

Query: 230 ESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAAL----------------- 271
           E ++LS T   D S+  +A +  +LK+LN+   QIT +G+  L                 
Sbjct: 300 EHLDLSSTAFGDDSVGFVACVGENLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTFV 359

Query: 272 ---------TSLTGLTHLDL-------FGARIT-----DSGAAYLRNFKNLRSLEICGGG 310
                    T++  +  LDL       F   I+     +   A L++  +L +L +    
Sbjct: 360 DDLSILLISTTMPCIKALDLGMNSTLGFYYLISPQEEKEKSLAALQSLTSLETLSLEHPY 419

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           L D  +  +  L+ LT L+L+ + +LTD TL  +S L  LVSL V +  +TS GL   +P
Sbjct: 420 LGDKALSGLSSLTGLTHLSLT-STSLTDSTLHHLSSLPNLVSLGVRDGVLTSNGLEKFRP 478

Query: 371 LKNLRSLTLESCK-VTANDIKRLQSR 395
              LR+L L+ C  +T +DI  L  R
Sbjct: 479 PNRLRTLDLQGCWLLTKDDIAGLCKR 504



 Score = 38.5 bits (88), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 3/97 (3%)

Query: 292 AAYLRNFK-NLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
            + L  FK ++ ++++ G    +A  + +I    +L  LNLS    +   TL  I+GLT 
Sbjct: 53  PSLLEGFKYSVENIDLRGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTS 112

Query: 350 LVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 385
           L  L++S   ++T AG++HL+ + NL+ L +    VT
Sbjct: 113 LTELDLSRCFKVTDAGMKHLQSVVNLKKLWISQTGVT 149


>gi|290977067|ref|XP_002671260.1| predicted protein [Naegleria gruberi]
 gi|284084827|gb|EFC38516.1| predicted protein [Naegleria gruberi]
          Length = 378

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 184/380 (48%), Gaps = 17/380 (4%)

Query: 8   LSNLTSLSF--------RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 59
           + NL SL F          +N I   G+KA A L  L K++  R      GL  +    +
Sbjct: 1   MKNLQSLDFSTTTNELSYNHNYIVTNGLKAIAELKQLKKINFHRNQIGQNGLQTISQFNQ 60

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L  L+I  CN I     K +S L  LK L I+ + + D G  Y+  +++LT L +    +
Sbjct: 61  LLCLDIS-CNGIGIEGAKAVSELNQLKELDITANDIGDIGAKYISQMKELTKLYVRYNDI 119

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI---TDECLVHLK 176
            +    S+  L  L  LN++   + D+G +  S +  L  L++  N I   + + +  +K
Sbjct: 120 NSQGASSIGELHQLTKLNISYNNIGDEGMKVISGMKHLTKLSVHNNHINVGSSQFISQMK 179

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNL   ++    IG EG+  ++ L  L  L++S  Q+G+ G   +S L  L  +++  
Sbjct: 180 QLTNL---SISENHIGIEGVETISQLSQLTRLKISSNQIGARGAILISKLDKLTKLSIGS 236

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I+D  L+ L  L  L  L  D  QI + G+ ++  L  LT LD+ G  I+  GA ++ 
Sbjct: 237 NRINDEGLKSLCRLKHLTKLKADFNQIGNEGVKSIIQLKQLTFLDIGGNNISHKGAQFIN 296

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV- 355
             K LR+L I    + + G K I +L+ L +L++ +N  L+D+ ++ I  +  L  L++ 
Sbjct: 297 QLKQLRTLYISENQIGNKGAKLISELTQLRILHIRKN-ELSDEGVKSILLMKQLTELDLR 355

Query: 356 SNSRITSAGLRHLKPLKNLR 375
            N  IT      L  LK+L+
Sbjct: 356 ENYDITVRMENQLSTLKSLK 375



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 119/257 (46%), Gaps = 1/257 (0%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L+ N   +  +G +  +++  LK +N   N+I    L  +     L  L++   GIG EG
Sbjct: 16  LSYNHNYIVTNGLKAIAELKQLKKINFHRNQIGQNGLQTISQFNQLLCLDISCNGIGIEG 75

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
              ++ L  LK L+++   +G  G +++S +  L  + + +  I+      +  L  L  
Sbjct: 76  AKAVSELNQLKELDITANDIGDIGAKYISQMKELTKLYVRYNDINSQGASSIGELHQLTK 135

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           LN+    I D G+  ++ +  LT L +    I    + ++   K L +L I    +   G
Sbjct: 136 LNISYNNIGDEGMKVISGMKHLTKLSVHNNHINVGSSQFISQMKQLTNLSISENHIGIEG 195

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
           V+ I  LS LT L +S N  +  +   LIS L  L  L++ ++RI   GL+ L  LK+L 
Sbjct: 196 VETISQLSQLTRLKISSN-QIGARGAILISKLDKLTKLSIGSNRINDEGLKSLCRLKHLT 254

Query: 376 SLTLESCKVTANDIKRL 392
            L  +  ++    +K +
Sbjct: 255 KLKADFNQIGNEGVKSI 271


>gi|149175887|ref|ZP_01854505.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148845334|gb|EDL59679.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 360

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 50  GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 109
           GLV+LK   +L+ L + W   ++D  +  L  L+ L  L +  + V+ SG+A+L+GL  L
Sbjct: 128 GLVHLKRFHRLKRLML-WNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGLTNL 186

Query: 110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
           T LNL+G  VT A L  ++   +L  LNLN+  +SD G      +  L +L L   ++T 
Sbjct: 187 TWLNLQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTG 246

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             L  L  L  L  L L+   I D  + +L     L  LEL DTQ+  +GL HLSGL  L
Sbjct: 247 TGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLL 306

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
           +++NLS T ++D  L  L GL  LK++ L   Q+T  GL
Sbjct: 307 DALNLSGTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGL 345



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 135/233 (57%), Gaps = 7/233 (3%)

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
           LVHLK    L+ L L +  + D+GLV+L  L  L  L+L  T V  SGL HL GLTNL  
Sbjct: 129 LVHLKRFHRLKRLMLWNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGLTNLTW 188

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           +NL  T +++  L+++   S+L+ LNL+   I+D GL  L  L  L  L L   ++T +G
Sbjct: 189 LNLQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTGTG 248

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
            + L +   L  L++ G  + D+ + H+K   +L  L L Q+  ++D  L  +SGL  L 
Sbjct: 249 LSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLEL-QDTQISDAGLVHLSGLPLLD 307

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR-----LQSRD-LP 398
           +LN+S +++T AGL +L+ L  L+++ L++ +VT+  +++      QSRD LP
Sbjct: 308 ALNLSGTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGLEQRKLILQQSRDPLP 360



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 125/227 (55%), Gaps = 1/227 (0%)

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           LS+ G     +   LK L L    ++D+ LVHLK L+ L  L+L    +   GL +L GL
Sbjct: 124 LSNTGLVHLKRFHRLKRLMLWNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGL 183

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
            NL  L L  T V ++GL+ ++  + L  +NL+ T ISD  L  L  L  L  L L+  Q
Sbjct: 184 TNLTWLNLQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQ 243

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
           +T TGL+ L+SL  L  L L G+ I DS  ++L++FK L  LE+    ++DAG+ H+  L
Sbjct: 244 VTGTGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGL 303

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
             L  LNLS    +TD  L  + GL  L ++ + N+++TS GL   K
Sbjct: 304 PLLDALNLS-GTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGLEQRK 349



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 135/268 (50%), Gaps = 3/268 (1%)

Query: 53  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 112
            +K   ++ES+++   +   DSD+  L+   NL+ + +S   ++++G+ +LK   +L  L
Sbjct: 85  QMKSFDEVESISL---DVTQDSDLVWLNDFPNLERISLSGKGLSNTGLVHLKRFHRLKRL 141

Query: 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
            L    V+   L  L  L  L +L+L    +S  G      + +L  LNL    +T+  L
Sbjct: 142 MLWNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGLTNLTWLNLQGTAVTNAGL 201

Query: 173 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
             +   + L  LNL+   I D GLV+L  L  L  L+L  TQV  +GL  LS L  L  +
Sbjct: 202 KQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCL 261

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
            L+ + I+D S+  L    +L  L L   QI+D GL  L+ L  L  L+L G ++TD+G 
Sbjct: 262 KLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGL 321

Query: 293 AYLRNFKNLRSLEICGGGLTDAGVKHIK 320
            YL+    L+++ +    +T  G++  K
Sbjct: 322 VYLQGLPRLKNVYLKNTQVTSEGLEQRK 349



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 108/204 (52%), Gaps = 1/204 (0%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           N +++  G+     L  L  LDL        GL +L+GL  L  LN++    +T++ +K 
Sbjct: 145 NTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGLTNLTWLNLQ-GTAVTNAGLKQ 203

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           ++  + L+ L ++ + ++D+G+ +L+ L +L +L LE   VT   L  LS+L  L+ L L
Sbjct: 204 VNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCLKL 263

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           N   ++D          +L  L L   +I+D  LVHL GL  L++LNL    + D GLV 
Sbjct: 264 NGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGLVY 323

Query: 199 LTGLCNLKCLELSDTQVGSSGLRH 222
           L GL  LK + L +TQV S GL  
Sbjct: 324 LQGLPRLKNVYLKNTQVTSEGLEQ 347



 Score = 38.1 bits (87), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 6/104 (5%)

Query: 6   SGLSNLTSLS----FRRNNA-ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           +GLS L+SL      + N + I    M        L++L+L+       GLV+L GL  L
Sbjct: 247 TGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLL 306

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 104
           ++LN+     +TD+ +  L GL  LK++ +  ++VT  G+   K
Sbjct: 307 DALNLS-GTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGLEQRK 349


>gi|330506767|ref|YP_004383195.1| internalin-A [Methanosaeta concilii GP6]
 gi|328927575|gb|AEB67377.1| internalin-A, putative [Methanosaeta concilii GP6]
          Length = 567

 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 151/401 (37%), Positives = 218/401 (54%), Gaps = 51/401 (12%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LSGL+NLT L    NN IT   + + +GLINL+ LDL    RI    V+L GL  +  L+
Sbjct: 184 LSGLTNLTDLDL-DNNQIT--DVSSLSGLINLMNLDLS-SNRITN--VSLSGLTNVVWLD 237

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 123
           + W N ITD     LSGLTNL  L +S +++ D  ++ L GL  LT L L GC  +T   
Sbjct: 238 L-WGNQITD---VTLSGLTNLTWLDVSRNQIAD--VSSLSGLTNLTKLYL-GCNQITDVS 290

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
             SLS L +L  L+L+  Q++D      S + +L  L+L  N I D   V L  LTNL  
Sbjct: 291 --SLSGLTNLTDLDLSTNQITD--ASPLSGLTNLTYLDLDNNRIND---VSLSDLTNLTD 343

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           L L +  I D  + +L+GL NLK L+LS+ Q+    +  LSGLTNL  + LS   I++  
Sbjct: 344 LELSNNQIND--VSSLSGLTNLKDLDLSNNQIN--DISSLSGLTNLTDLELSSNEITN-- 397

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           +  L+ L+SL+ L+LD  QI D  +++L++LT L  L L     TD  A+ L +  NLR 
Sbjct: 398 ISSLSSLASLRCLDLDNNQIID--VSSLSALTSLKWLRLCSNHATD--ASSLSSLVNLRW 453

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           L++    +TD  V  +  L +L  LNLS N  +TD  +  +SGL  L  L++S+++IT  
Sbjct: 454 LDLSSNQITD--VSPLSGLYNLGWLNLSSN-QITD--VSPLSGLANLTGLDLSSNQIT-- 506

Query: 364 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
               + PL NL +L              L+S+ +P+  + R
Sbjct: 507 ---DVSPLSNLTNLIW----------MDLRSKQIPDASTLR 534



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 190/370 (51%), Gaps = 51/370 (13%)

Query: 34  INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 93
           I L+  D+     I G    L+  + LE+L+++  N I  SD   LSGLT LK L++S +
Sbjct: 60  IKLLNADMSSIKDITG----LERCINLENLSLR-ENEI--SDASSLSGLTGLKRLELSSN 112

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
           ++TD     L GL  L  L+L    +T   L  L+ L +L         +S       S 
Sbjct: 113 QITD---VSLSGLANLETLSLWDNHITNVSLSGLTNLDTLLLWGNKIINVS-----SLSG 164

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD- 212
           + +L  L+L  N+ITD     L GLTNL  L+LD+  I D  + +L+GL NL  L+LS  
Sbjct: 165 LTNLTDLDLSTNQITDAS--PLSGLTNLTDLDLDNNQITD--VSSLSGLINLMNLDLSSN 220

Query: 213 --TQVGSSGLRH---------------LSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
             T V  SGL +               LSGLTNL  +++S   I+D S   L+GL++L  
Sbjct: 221 RITNVSLSGLTNVVWLDLWGNQITDVTLSGLTNLTWLDVSRNQIADVS--SLSGLTNLTK 278

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L L   QITD  +++L+ LT LT LDL   +ITD  A+ L    NL  L++    + D  
Sbjct: 279 LYLGCNQITD--VSSLSGLTNLTDLDLSTNQITD--ASPLSGLTNLTYLDLDNNRINDVS 334

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
              + DL++LT L LS N  + D  +  +SGLT L  L++SN++I    +  L  L NL 
Sbjct: 335 ---LSDLTNLTDLELSNN-QIND--VSSLSGLTNLKDLDLSNNQIN--DISSLSGLTNLT 386

Query: 376 SLTLESCKVT 385
            L L S ++T
Sbjct: 387 DLELSSNEIT 396



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 11/122 (9%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLE 61
           ++S LS LTSL + R  +  A    + + L+NL  LDL   + T +      L GL  L 
Sbjct: 419 DVSSLSALTSLKWLRLCSNHATDASSLSSLVNLRWLDLSSNQITDVSP----LSGLYNLG 474

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            LN+   N ITD  + PLSGL NL  L +S +++TD  ++ L  L  L  ++L    +  
Sbjct: 475 WLNLS-SNQITD--VSPLSGLANLTGLDLSSNQITD--VSPLSNLTNLIWMDLRSKQIPD 529

Query: 122 AC 123
           A 
Sbjct: 530 AS 531


>gi|290974552|ref|XP_002670009.1| predicted protein [Naegleria gruberi]
 gi|284083563|gb|EFC37265.1| predicted protein [Naegleria gruberi]
          Length = 445

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 150/305 (49%), Gaps = 1/305 (0%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           D K L  L  L  L I  + + + G  Y+  +Q L +LN+ G  +    +  +S +  L 
Sbjct: 55  DCKKLGLLKQLTQLDIDGNNIDEEGAKYISEMQYLAILNMLGNNIGNEGVKYISGMKQLT 114

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           +LN++   +  DG +   ++  L  LN+G N I DE    +  +T L  L +  CGI  E
Sbjct: 115 HLNVSENNIGLDGVKYIVEMKQLTHLNIGQNSIGDEGAKLIGEMTQLLDLCIFYCGISSE 174

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           G+ +++ L  L  L +S   +     +++SG+  L  + +    I D   + L  +  L 
Sbjct: 175 GIKHISKLDKLTDLNISSNMLYDDSTKYISGMNQLTYLRIHDNNIGDEGAKFLGKMKQLT 234

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
            +N+   ++T  G+  LT L  LT +D+    I D+GA Y+   K L +L++    + + 
Sbjct: 235 GINIWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSDNNIGEE 294

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
           G K+I ++  LT+L L +N N+  +  + IS L  L  L++S + I   G +++  +  L
Sbjct: 295 GAKYIGNMKQLTILTLWKN-NIRGEGAKYISKLEKLTELDISENHIDEKGAKYISEMSQL 353

Query: 375 RSLTL 379
            +L +
Sbjct: 354 NALDI 358



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 156/309 (50%), Gaps = 1/309 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I +   K +S +  L  L +  + + + G+ Y+ G+++LT LN+    +    +  + 
Sbjct: 73  NNIDEEGAKYISEMQYLAILNMLGNNIGNEGVKYISGMKQLTHLNVSENNIGLDGVKYIV 132

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            +  L +LN+ +  + D+G +   ++  L  L + +  I+ E + H+  L  L  LN+ S
Sbjct: 133 EMKQLTHLNIGQNSIGDEGAKLIGEMTQLLDLCIFYCGISSEGIKHISKLDKLTDLNISS 192

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             + D+    ++G+  L  L + D  +G  G + L  +  L  IN+    ++   ++ L 
Sbjct: 193 NMLYDDSTKYISGMNQLTYLRIHDNNIGDEGAKFLGKMKQLTGINIWRNELTAEGVKFLT 252

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
           GL  L  +++ +  I D G   ++ +  LT+LD+    I + GA Y+ N K L  L +  
Sbjct: 253 GLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSDNNIGEEGAKYIGNMKQLTILTLWK 312

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
             +   G K+I  L  LT L++S+N ++ +K  + IS ++ L +L++S + I + G +++
Sbjct: 313 NNIRGEGAKYISKLEKLTELDISEN-HIDEKGAKYISEMSQLNALDISVNIIGNQGAKYI 371

Query: 369 KPLKNLRSL 377
           K +K L  L
Sbjct: 372 KEMKQLTDL 380



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 140/307 (45%), Gaps = 25/307 (8%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I  +G+K  +G+  L  L++        G+  +  + +L  LNI   N I D   K +
Sbjct: 97  NNIGNEGVKYISGMKQLTHLNVSENNIGLDGVKYIVEMKQLTHLNIG-QNSIGDEGAKLI 155

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
             +T L  L I    ++  GI ++  L KLT LN+    +       +S +  L YL ++
Sbjct: 156 GEMTQLLDLCIFYCGISSEGIKHISKLDKLTDLNISSNMLYDDSTKYISGMNQLTYLRIH 215

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
              + D+G +   K+  L  +N+  NE+T E +  L GL  L  +++ S  IGD G   +
Sbjct: 216 DNNIGDEGAKFLGKMKQLTGINIWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYI 275

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
           + +  L  L++SD  +G  G +++                  G++++L  L+  K+    
Sbjct: 276 SEMKQLTNLDVSDNNIGEEGAKYI------------------GNMKQLTILTLWKN---- 313

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
              I   G   ++ L  LT LD+    I + GA Y+     L +L+I    + + G K+I
Sbjct: 314 --NIRGEGAKYISKLEKLTELDISENHIDEKGAKYISEMSQLNALDISVNIIGNQGAKYI 371

Query: 320 KDLSSLT 326
           K++  LT
Sbjct: 372 KEMKQLT 378


>gi|188586163|ref|YP_001917708.1| hypothetical protein Nther_1542 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350850|gb|ACB85120.1| Leucine-rich repeat, ribonuclease inhibitor subtype [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 344

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 167/318 (52%), Gaps = 18/318 (5%)

Query: 53  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 112
           NLK  +K E L ++    IT+ +++ L+ LT      +S   +   GI Y   LQ+L+L 
Sbjct: 38  NLKAAIK-EELGVE---QITEENIEDLTTLT------VSGEDINIKGIEYAINLQELSL- 86

Query: 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             +G  +    +++L+ + +L  LNLN  +++D+G E+ ++  +LK ++L   ++TDE  
Sbjct: 87  --QGTKI--EDVNTLAEVDNLEELNLNYTEITDEGIEQLAEADNLKQISLTHTDVTDEGT 142

Query: 173 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
             L    +LE L L    + D+GL +L    NLK L+L  T V   G  HL+   NLE +
Sbjct: 143 KLLAESESLERLILSGTEVTDDGLEHLIEADNLKKLDLHGTDVTDDGAEHLAETDNLEKL 202

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
           +L  T ++D  + +L  + +L+ L L   ++TD G+  L     L  L L G  IT+ G 
Sbjct: 203 SLVDTEVTDEGIEQLVKVDNLEVLILGWTEVTDNGVEYLAEADNLEMLHLDGTEITNEGV 262

Query: 293 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
            YL    NL  L++    +TD  V  + +  SL  L+L  + ++TD+ ++ ++    L  
Sbjct: 263 KYLAEADNLEELDLKQTKVTD--VNALAETDSLEELDL-WDTDVTDEGVKELAEADSLKV 319

Query: 353 LNVSNSRITSAGLRHLKP 370
           +N+  + +T+ G+ HL+ 
Sbjct: 320 VNLDETEVTNEGVEHLED 337



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 156/301 (51%), Gaps = 10/301 (3%)

Query: 26  GMKAFAGLINLVKLDLERCTR--IHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLS 80
            +K   G+  + + ++E  T   + G  +N+KG+   + L+ L+++        D+  L+
Sbjct: 42  AIKEELGVEQITEENIEDLTTLTVSGEDINIKGIEYAINLQELSLQGTKI---EDVNTLA 98

Query: 81  GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
            + NL+ L ++ +++TD GI  L     L  ++L    VT      L+   SL  L L+ 
Sbjct: 99  EVDNLEELNLNYTEITDEGIEQLAEADNLKQISLTHTDVTDEGTKLLAESESLERLILSG 158

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
            +++DDG E   +  +LK L+L   ++TD+   HL    NLE L+L    + DEG+  L 
Sbjct: 159 TEVTDDGLEHLIEADNLKKLDLHGTDVTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLV 218

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
            + NL+ L L  T+V  +G+ +L+   NLE ++L  T I++  ++ LA   +L+ L+L  
Sbjct: 219 KVDNLEVLILGWTEVTDNGVEYLAEADNLEMLHLDGTEITNEGVKYLAEADNLEELDLKQ 278

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
            ++TD    AL     L  LDL+   +TD G   L    +L+ + +    +T+ GV+H++
Sbjct: 279 TKVTDVN--ALAETDSLEELDLWDTDVTDEGVKELAEADSLKVVNLDETEVTNEGVEHLE 336

Query: 321 D 321
           D
Sbjct: 337 D 337



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 27/169 (15%)

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           NL+ ++L  T I D  +  LA + +L+ LNL+  +ITD G+  L     L  + L    +
Sbjct: 80  NLQELSLQGTKIED--VNTLAEVDNLEELNLNYTEITDEGIEQLAEADNLKQISLTHTDV 137

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           TD G   L   ++L  L + G  +TD G++H+ +  +L  L+L                 
Sbjct: 138 TDEGTKLLAESESLERLILSGTEVTDDGLEHLIEADNLKKLDLH---------------- 181

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 396
                     + +T  G  HL    NL  L+L   +VT   I++L   D
Sbjct: 182 ---------GTDVTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLVKVD 221



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 18/152 (11%)

Query: 260 ARQITDTGLAALTSLT---------------GLTHLDLFGARITDSGAAYLRNFKNLRSL 304
             QIT+  +  LT+LT                L  L L G +I D     L    NL  L
Sbjct: 49  VEQITEENIEDLTTLTVSGEDINIKGIEYAINLQELSLQGTKIEDVNT--LAEVDNLEEL 106

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
            +    +TD G++ + +  +L  ++L+ + ++TD+  +L++    L  L +S + +T  G
Sbjct: 107 NLNYTEITDEGIEQLAEADNLKQISLT-HTDVTDEGTKLLAESESLERLILSGTEVTDDG 165

Query: 365 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 396
           L HL    NL+ L L    VT +  + L   D
Sbjct: 166 LEHLIEADNLKKLDLHGTDVTDDGAEHLAETD 197


>gi|290980071|ref|XP_002672756.1| predicted protein [Naegleria gruberi]
 gi|284086335|gb|EFC40012.1| predicted protein [Naegleria gruberi]
          Length = 385

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 162/316 (51%), Gaps = 1/316 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I D   K +SG+ +L SL I  +++   G   + G++ L  L++    +       +S
Sbjct: 28  NQIGDEGSKFISGMKHLTSLNIDRNQIGVEGAKLISGMKSLISLSIGDNQIGVEGAKLIS 87

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            +  L  L++NR Q+  +G +  S++  L  LN+ +N+I  E    + G+  L SL++  
Sbjct: 88  GMKHLTSLDINRNQIGVEGAKSISRMKQLTSLNIYYNQIGAEGAKSISGMKQLTSLDIGG 147

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             IG E    ++ +  L  L++ + Q+G  G + +SG+  L S+N+ F  I     + ++
Sbjct: 148 NQIGVEESKYISEMKQLTSLDIYNNQIGVEGAKSISGMKQLTSLNIGFNRIGVEGSKLIS 207

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
            +  L SLN+ + +I   G   +  +  LT L+++   I D G+ Y+   K L SL+I  
Sbjct: 208 EMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDEGSKYISEMKQLTSLDIYY 267

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
             +   G K+I ++  LT L +S N  +  +  + IS +  L SL++++++I   G + +
Sbjct: 268 NEIGVEGAKYISEMKQLTSLGISDN-QIGVEGAKFISEMKLLTSLDIADNQIGDEGSKFI 326

Query: 369 KPLKNLRSLTLESCKV 384
             +K+L SL + S ++
Sbjct: 327 SEMKSLTSLNVNSNQI 342



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 162/330 (49%), Gaps = 4/330 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMKLESL 63
           +SG+ +LTSL+  RN  I  +G K  +G+ +L+ L + +    + G  + + G+  L SL
Sbjct: 38  ISGMKHLTSLNIDRNQ-IGVEGAKLISGMKSLISLSIGDNQIGVEGAKL-ISGMKHLTSL 95

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           +I   N I     K +S +  L SL I  +++   G   + G+++LT L++ G  +    
Sbjct: 96  DINR-NQIGVEGAKSISRMKQLTSLNIYYNQIGAEGAKSISGMKQLTSLDIGGNQIGVEE 154

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
              +S +  L  L++   Q+  +G +  S +  L  LN+GFN I  E    +  +  L S
Sbjct: 155 SKYISEMKQLTSLDIYNNQIGVEGAKSISGMKQLTSLNIGFNRIGVEGSKLISEMKQLTS 214

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           LN+ S  IG EG   +  + +L  L +   ++G  G +++S +  L S+++ +  I    
Sbjct: 215 LNIGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDEGSKYISEMKQLTSLDIYYNEIGVEG 274

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
            + ++ +  L SL +   QI   G   ++ +  LT LD+   +I D G+ ++   K+L S
Sbjct: 275 AKYISEMKQLTSLGISDNQIGVEGAKFISEMKLLTSLDIADNQIGDEGSKFISEMKSLTS 334

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           L +    + D G K I  +  LT L +  N
Sbjct: 335 LNVNSNQIGDEGAKLISGMKQLTSLKIYYN 364



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 147/286 (51%), Gaps = 2/286 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +SG+ +LTSL   RN  I  +G K+ + +  L  L++        G  ++ G+ +L SL+
Sbjct: 86  ISGMKHLTSLDINRNQ-IGVEGAKSISRMKQLTSLNIYYNQIGAEGAKSISGMKQLTSLD 144

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I   + K +S +  L SL I  +++   G   + G+++LT LN+    +     
Sbjct: 145 I-GGNQIGVEESKYISEMKQLTSLDIYNNQIGVEGAKSISGMKQLTSLNIGFNRIGVEGS 203

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             +S +  L  LN+   ++  +G +   ++  L  LN+ +NEI DE   ++  +  L SL
Sbjct: 204 KLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDEGSKYISEMKQLTSL 263

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           ++    IG EG   ++ +  L  L +SD Q+G  G + +S +  L S++++   I D   
Sbjct: 264 DIYYNEIGVEGAKYISEMKQLTSLGISDNQIGVEGAKFISEMKLLTSLDIADNQIGDEGS 323

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           + ++ + SL SLN+++ QI D G   ++ +  LT L ++  +I ++
Sbjct: 324 KFISEMKSLTSLNVNSNQIGDEGAKLISGMKQLTSLKIYYNQIGET 369



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 140/284 (49%), Gaps = 16/284 (5%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-------ERCTRIHGGLVNL 54
            +++S +  LTSL+   N  I A+G K+ +G+  L  LD+       E    I       
Sbjct: 107 AKSISRMKQLTSLNIYYNQ-IGAEGAKSISGMKQLTSLDIGGNQIGVEESKYISE----- 160

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
             + +L SL+I + N I     K +SG+  L SL I  +++   G   +  +++LT LN+
Sbjct: 161 --MKQLTSLDI-YNNQIGVEGAKSISGMKQLTSLNIGFNRIGVEGSKLISEMKQLTSLNI 217

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
               +       +  +  L  LN+   ++ D+G +  S++  L  L++ +NEI  E   +
Sbjct: 218 GSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDEGSKYISEMKQLTSLDIYYNEIGVEGAKY 277

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +  +  L SL +    IG EG   ++ +  L  L+++D Q+G  G + +S + +L S+N+
Sbjct: 278 ISEMKQLTSLGISDNQIGVEGAKFISEMKLLTSLDIADNQIGDEGSKFISEMKSLTSLNV 337

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
           +   I D   + ++G+  L SL +   QI +T L ++ S+T  T
Sbjct: 338 NSNQIGDEGAKLISGMKQLTSLKIYYNQIGETLLMSVISITAET 381



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 4/103 (3%)

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
           ++   K+L SL+I    + D G K I  +  LT LN+ +N  +  +  +LISG+  L+SL
Sbjct: 13  FISEMKHLTSLDIADNQIGDEGSKFISGMKHLTSLNIDRN-QIGVEGAKLISGMKSLISL 71

Query: 354 NVSNSRITSAGLRHLKPLKNLRSLTLESCKV---TANDIKRLQ 393
           ++ +++I   G + +  +K+L SL +   ++    A  I R++
Sbjct: 72  SIGDNQIGVEGAKLISGMKHLTSLDINRNQIGVEGAKSISRMK 114


>gi|168700559|ref|ZP_02732836.1| hypothetical protein GobsU_13597 [Gemmata obscuriglobus UQM 2246]
          Length = 446

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 171/365 (46%), Gaps = 9/365 (2%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           +T  G  A  G +    + +ER   +   L  LKGL  +  +     + +TD+D+  ++G
Sbjct: 70  VTVHGPGADGGCV----VRVERTADLAPALATLKGLKCVTEVTFA-SDRLTDTDLACIAG 124

Query: 82  LTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
             +L+S  +  C +VT +G   L  L +L  ++L G PVT      L  + +L  + L R
Sbjct: 125 FEHLRSFGLRDCGRVTGAGFGVLAQLPRLKWVSLVG-PVTDEAGPHLGRIKTLETVVLYR 183

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
            + +D G ++ + + +L  +N+    +T        G + L  ++         GL  ++
Sbjct: 184 TKFTDAGLKELAALPALGSVNVTATPVTGTAFAE-PGWSRLREIDATQTAFNAAGLEAVS 242

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
            L  L  L L  T V  SGL+HL+    L+ ++L+ T ++D  +  LAG+ +L+ LNL+ 
Sbjct: 243 ALPVLGTLTLDATAVTDSGLKHLARARALQELSLADTPVADTGVAALAGVQTLRVLNLER 302

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
             +T    A       L  L+L   R TD+  ++L     L +L + G  +TDAG+  + 
Sbjct: 303 TGVTGAAFATFPVPAELRKLNLAETRFTDASGSHLARLPALTNLSLSGCDVTDAGLARLA 362

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
           DL  L  L+L+      D   E+   L  L  ++   +++T AGL+       LR L + 
Sbjct: 363 DLKKLANLDLT-GTKAGDGAAEVAGTLAELEVVSFRGTQLTDAGLKAAAHGARLRFLYVR 421

Query: 381 SCKVT 385
             KVT
Sbjct: 422 GSKVT 426



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 143/331 (43%), Gaps = 11/331 (3%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLES 62
            L GL  +T ++F  ++ +T   +   AG  +L    L  C R+ G G   L  L +L  
Sbjct: 97  TLKGLKCVTEVTFA-SDRLTDTDLACIAGFEHLRSFGLRDCGRVTGAGFGVLAQLPRL-- 153

Query: 63  LNIKWCN---CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
              KW +    +TD     L  +  L+++ +  +K TD+G+  L  L  L  +N+   PV
Sbjct: 154 ---KWVSLVGPVTDEAGPHLGRIKTLETVVLYRTKFTDAGLKELAALPALGSVNVTATPV 210

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
           T     +      L  ++  +   +  G E  S +  L  L L    +TD  L HL    
Sbjct: 211 TGTAF-AEPGWSRLREIDATQTAFNAAGLEAVSALPVLGTLTLDATAVTDSGLKHLARAR 269

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            L+ L+L    + D G+  L G+  L+ L L  T V  +          L  +NL+ T  
Sbjct: 270 ALQELSLADTPVADTGVAALAGVQTLRVLNLERTGVTGAAFATFPVPAELRKLNLAETRF 329

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           +D S   LA L +L +L+L    +TD GLA L  L  L +LDL G +  D  A       
Sbjct: 330 TDASGSHLARLPALTNLSLSGCDVTDAGLARLADLKKLANLDLTGTKAGDGAAEVAGTLA 389

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
            L  +   G  LTDAG+K     + L  L +
Sbjct: 390 ELEVVSFRGTQLTDAGLKAAAHGARLRFLYV 420



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 2/246 (0%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
            T  G+K  A L  L  +++   T + G      G  +L  ++         + ++ +S 
Sbjct: 186 FTDAGLKELAALPALGSVNVT-ATPVTGTAFAEPGWSRLREIDATQ-TAFNAAGLEAVSA 243

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           L  L +L +  + VTDSG+ +L   + L  L+L   PV    + +L+ + +L  LNL R 
Sbjct: 244 LPVLGTLTLDATAVTDSGLKHLARARALQELSLADTPVADTGVAALAGVQTLRVLNLERT 303

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            ++      F     L+ LNL     TD    HL  L  L +L+L  C + D GL  L  
Sbjct: 304 GVTGAAFATFPVPAELRKLNLAETRFTDASGSHLARLPALTNLSLSGCDVTDAGLARLAD 363

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L  L  L+L+ T+ G         L  LE ++   T ++D  L+  A  + L+ L +   
Sbjct: 364 LKKLANLDLTGTKAGDGAAEVAGTLAELEVVSFRGTQLTDAGLKAAAHGARLRFLYVRGS 423

Query: 262 QITDTG 267
           ++T  G
Sbjct: 424 KVTKRG 429



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 111/257 (43%), Gaps = 26/257 (10%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           +    + +TD  L  + G  +L S  L  CG +   G   L  L  LK + L       +
Sbjct: 107 VTFASDRLTDTDLACIAGFEHLRSFGLRDCGRVTGAGFGVLAQLPRLKWVSLVGPVTDEA 166

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT------------ 266
           G  HL  +  LE++ L  T  +D  L++LA L +L S+N+ A  +T T            
Sbjct: 167 G-PHLGRIKTLETVVLYRTKFTDAGLKELAALPALGSVNVTATPVTGTAFAEPGWSRLRE 225

Query: 267 -----------GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
                      GL A+++L  L  L L    +TDSG  +L   + L+ L +    + D G
Sbjct: 226 IDATQTAFNAAGLEAVSALPVLGTLTLDATAVTDSGLKHLARARALQELSLADTPVADTG 285

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
           V  +  + +L +LNL +   +T            L  LN++ +R T A   HL  L  L 
Sbjct: 286 VAALAGVQTLRVLNL-ERTGVTGAAFATFPVPAELRKLNLAETRFTDASGSHLARLPALT 344

Query: 376 SLTLESCKVTANDIKRL 392
           +L+L  C VT   + RL
Sbjct: 345 NLSLSGCDVTDAGLARL 361


>gi|149175664|ref|ZP_01854283.1| hypothetical protein PM8797T_31103 [Planctomyces maris DSM 8797]
 gi|148845383|gb|EDL59727.1| hypothetical protein PM8797T_31103 [Planctomyces maris DSM 8797]
          Length = 660

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 186/361 (51%), Gaps = 11/361 (3%)

Query: 43  RCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSG 99
           R   +H G  L +L    KLE L ++ C  + + D+  L  LT L+ L +S  S + D  
Sbjct: 293 RLENVHLGRHLNDLSTFRKLEKLALRNCG-LDEDDVATLGSLTQLRELDLSGNSSLNDVA 351

Query: 100 IAYLKGLQKLTLLNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
           + +L+ L +L  L +      +T   L  L     L  L+L  C L  DG      + SL
Sbjct: 352 LFHLRNLNQLEELKVASYYNRITEKGLQYLRQPRKLKTLDLIGCMLKADGLAAIGDVSSL 411

Query: 158 KVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGLCNLKCLELSDT 213
           + LNL       +       L+ L +L  L L+   + G EGL +L+ L  L+ L L  T
Sbjct: 412 ETLNLKVYCPERVDAHFFDPLRHLKSLRELTLECRQLKGGEGLSSLSQLPELEALHLLQT 471

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
           ++    +R ++   +L+++ L+   ++D  +  L  L  L+SLNLD  ++  +GL +L  
Sbjct: 472 KLQDEDIRWIANCNSLKALTLNSYEVTDQGVSSLGSLKQLESLNLDRCRLDGSGLVSLQQ 531

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           L  LT + L    +TD+   +L +   L+ L +  G ++ A ++ +KDL  L+ LNL+ N
Sbjct: 532 LHRLTDVSLNHTGVTDAVIPFLSSLSQLKRLTLENGRVSSATLESLKDLKKLSELNLT-N 590

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
           C ++D+  EL++ ++ L +LN++ +++++ GL  L+    L +L+L   KVT   +++L+
Sbjct: 591 CPVSDEICELLTQMSALRTLNLNKTKVSNIGLEGLQKATGLETLSLRRTKVTRQGVQQLR 650

Query: 394 S 394
           +
Sbjct: 651 T 651



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 186/388 (47%), Gaps = 39/388 (10%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLES 62
           +LS    L  L+ R N  +    +     L  L +LDL   + ++   L +L+ L +LE 
Sbjct: 305 DLSTFRKLEKLALR-NCGLDEDDVATLGSLTQLRELDLSGNSSLNDVALFHLRNLNQLEE 363

Query: 63  LNI-KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-GCP-- 118
           L +  + N IT+  ++ L     LK+L +    +   G+A +  +  L  LNL+  CP  
Sbjct: 364 LKVASYYNRITEKGLQYLRQPRKLKTLDLIGCMLKADGLAAIGDVSSLETLNLKVYCPER 423

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 177
           V A   D L  L SL  L L   QL   +G    S++  L+ L+L   ++ DE +  +  
Sbjct: 424 VDAHFFDPLRHLKSLRELTLECRQLKGGEGLSSLSQLPELEALHLLQTKLQDEDIRWIAN 483

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
             +L++L L+S  + D+G+ +L  L  L+ L L   ++  SGL  L  L  L  ++L+ T
Sbjct: 484 CNSLKALTLNSYEVTDQGVSSLGSLKQLESLNLDRCRLDGSGLVSLQQLHRLTDVSLNHT 543

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
           G++D  +  L+ LS LK L L+  +++   L +L  L  L+ L+L    ++D        
Sbjct: 544 GVTDAVIPFLSSLSQLKRLTLENGRVSSATLESLKDLKKLSELNLTNCPVSD-------- 595

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
                  EIC         + +  +S+L  LNL++   +++  LE +   TGL +L++  
Sbjct: 596 -------EIC---------ELLTQMSALRTLNLNK-TKVSNIGLEGLQKATGLETLSLRR 638

Query: 358 SRITSAGLRHLKPLKNLRSLTLESCKVT 385
           +++T  G++ L+ +       L  C++T
Sbjct: 639 TKVTRQGVQQLRTV-------LADCQIT 659


>gi|290991306|ref|XP_002678276.1| predicted protein [Naegleria gruberi]
 gi|284091888|gb|EFC45532.1| predicted protein [Naegleria gruberi]
          Length = 445

 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 166/348 (47%), Gaps = 26/348 (7%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SLNI   N I D   K +  +  L SL I  +++ D GI  +  +++LTLL++ G
Sbjct: 100 MKQLTSLNIS-NNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLLDISG 158

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +    +  +S +  L  LN+   ++   G +   ++  L  L++ +NEI DE    + 
Sbjct: 159 NSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSIS 218

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN--- 233
            L  L SL +    IGDEG+  ++ +  L  L++S   +G  G++ +S +  L S+N   
Sbjct: 219 ELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNIYN 278

Query: 234 ---------------------LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 272
                                +S+  I D   + ++ +  L SL +   QI D G+  ++
Sbjct: 279 NEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGDEGIKLIS 338

Query: 273 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
            +  LT LD+ G  + D G   +   K L SL I    +  AG K I ++  LT L++S 
Sbjct: 339 EMKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLTSLDISY 398

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
           N  + D+  + IS L  L  L++S + I   G + +  +K L+SL ++
Sbjct: 399 N-EIGDEGAKSISELKQLTLLDISGNGIGDEGSKFIIGMKQLKSLDIQ 445



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 158/306 (51%), Gaps = 7/306 (2%)

Query: 77  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           K +S +  L SL IS +++ D     +  +++LT L++ G  +    +  +S +  L  L
Sbjct: 95  KFISEMKQLTSLNISNNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLL 154

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI---TDECLVHLKGLTNLESLNLDSCGIGD 193
           +++   + D G +  SK+  L  LN+  NEI     + ++ +K LT   SL++    IGD
Sbjct: 155 DISGNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLT---SLDISYNEIGD 211

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
           EG  +++ L  L  L +S  Q+G  G++ +S +  L  +++S   I D  ++ ++ +  L
Sbjct: 212 EGAKSISELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQL 271

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
            SLN+   +I   G   +  +  LT LD+    I D GA  +   K L SL I G  + D
Sbjct: 272 TSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGD 331

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 373
            G+K I ++  LTLL++S   ++ DK ++ IS +  L SL +  + I  AG + +  +K 
Sbjct: 332 EGIKLISEMKQLTLLDIS-GKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQ 390

Query: 374 LRSLTL 379
           L SL +
Sbjct: 391 LTSLDI 396



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 155/303 (51%), Gaps = 7/303 (2%)

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161
           ++  +++LT LN+    +      S+  +  L  L++   Q+ D+G +  S++  L +L+
Sbjct: 96  FISEMKQLTSLNISNNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLLD 155

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
           +  N I D+ +  +  +  L SLN+ +  IG  G   +  +  L  L++S  ++G  G +
Sbjct: 156 ISGNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAK 215

Query: 222 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
            +S L  L S+ +S   I D  ++ ++ +  L  L++    I D G+  ++ +  LT L+
Sbjct: 216 SISELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLN 275

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
           ++   I  +G+ ++   K L SL+I    + D G K I ++  LT L +S N  + D+ +
Sbjct: 276 IYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGN-QIGDEGI 334

Query: 342 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSR 395
           +LIS +  L  L++S   +   G++ +  +K L SLT+ + ++        +++K+L S 
Sbjct: 335 KLISEMKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLTSL 394

Query: 396 DLP 398
           D+ 
Sbjct: 395 DIS 397



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 160/326 (49%), Gaps = 8/326 (2%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           +  LTSL     N I  +G+K  + +  L  LD+   +    G+  +  + +L SLNI +
Sbjct: 124 MKRLTSLDIG-GNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNI-Y 181

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N I  +  K +  +  L SL IS +++ D G   +  L++LT L + G  +    +  +
Sbjct: 182 NNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTVSGNQIGDEGIKLI 241

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI---TDECLVHLKGLTNLESL 184
           S +  L  L+++   + D G +  SK+  L  LN+  NEI     + ++ +K LT   SL
Sbjct: 242 SEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLT---SL 298

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           ++    IGDEG  +++ +  L  L +S  Q+G  G++ +S +  L  +++S   + D  +
Sbjct: 299 DISYNEIGDEGAKSISEMKQLTSLTISGNQIGDEGIKLISEMKQLTLLDISGKSVGDKGV 358

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + ++ +  L SL +   +I   G   ++ +  LT LD+    I D GA  +   K L  L
Sbjct: 359 KSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTLL 418

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNL 330
           +I G G+ D G K I  +  L  L++
Sbjct: 419 DISGNGIGDEGSKFIIGMKQLKSLDI 444



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 143/281 (50%), Gaps = 2/281 (0%)

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           +S +  L  LN++  Q++D+  +   ++  L  L++G N+I DE +  +  +  L  L++
Sbjct: 97  ISEMKQLTSLNISNNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLLDI 156

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
               IGD+G+  ++ +  L  L + + ++G +G + +  +  L S+++S+  I D   + 
Sbjct: 157 SGNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKS 216

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           ++ L  L SL +   QI D G+  ++ +  LT LD+ G  I D G   +   K L SL I
Sbjct: 217 ISELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNI 276

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
               +  AG K I ++  LT L++S N  + D+  + IS +  L SL +S ++I   G++
Sbjct: 277 YNNEIGVAGSKFIIEMKQLTSLDISYN-EIGDEGAKSISEMKQLTSLTISGNQIGDEGIK 335

Query: 367 HLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPNLVSFRPE 406
            +  +K L  L +    V    +K + + + L +L  +  E
Sbjct: 336 LISEMKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNE 376


>gi|290978443|ref|XP_002671945.1| predicted protein [Naegleria gruberi]
 gi|284085518|gb|EFC39201.1| predicted protein [Naegleria gruberi]
          Length = 381

 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 174/350 (49%), Gaps = 7/350 (2%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           +  L+SL+I   N + D  +K +S +  L  L +S +K    G   + G+  LT LN+  
Sbjct: 1   MQNLKSLSI-VGNGLVDEHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNIND 59

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +       +  +  L  L +  C++ ++G    S++ +L  LNL  N I D+   ++ 
Sbjct: 60  NYILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLHGNFIGDKGASYIS 119

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE---SIN 233
            + NL  LN+ S  +  EG  +++GL NLK L +   Q+G  G + +S + +LE   S++
Sbjct: 120 EMVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLD 179

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           +S   I D  ++ L+ +S+L  L++ +  +   G+ ++  + GL  L++    +  SGA 
Sbjct: 180 VSGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSNDLGSSGAK 239

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            +    NL SL I    L   G K I ++ ++T+L + +N ++ D+  + I  +  L SL
Sbjct: 240 LISGMSNLTSLNISANRLLGEGAKFIGEMHNVTIL-VIRNNDIGDEGAKFICKMKQLKSL 298

Query: 354 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
           N   +RI+S G   +  +K L SL +    + +   K +  R L NL S 
Sbjct: 299 NAVYNRISSKGFESISEMKQLTSLDIGYNSIDSKGAKSV--RKLKNLTSL 346



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 158/323 (48%), Gaps = 28/323 (8%)

Query: 77  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           + +SG+  L +L I+ + + D G  ++  +++LTLL ++ C +      ++S L +L +L
Sbjct: 44  EKISGMVGLTTLNINDNYILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFL 103

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG---- 192
           NL+   + D G    S++ +L  LN+G  ++T E   H+ GL NL+SL + +  IG    
Sbjct: 104 NLHGNFIGDKGASYISEMVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGA 163

Query: 193 -----------------------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
                                  D+G+  L+ + NL  L++    VG  G+  + G+  L
Sbjct: 164 KWISTMKDLEGLTSLDVSGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGL 223

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
            S+N+S   +     + ++G+S+L SLN+ A ++   G   +  +  +T L +    I D
Sbjct: 224 ISLNVSSNDLGSSGAKLISGMSNLTSLNISANRLLGEGAKFIGEMHNVTILVIRNNDIGD 283

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
            GA ++   K L+SL      ++  G + I ++  LT L++  N  +  K  + +  L  
Sbjct: 284 EGAKFICKMKQLKSLNAVYNRISSKGFESISEMKQLTSLDIGYNS-IDSKGAKSVRKLKN 342

Query: 350 LVSLNVSNSRITSAGLRHLKPLK 372
           L SLNV ++ I   GL+ +  LK
Sbjct: 343 LTSLNVRSNMIDDEGLKAIGQLK 365



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 165/349 (47%), Gaps = 30/349 (8%)

Query: 3   ENLSGLSNLTSLSF--RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           E+L  +S +  L+      N    +G +  +G++ L  L++     +  G   +  + +L
Sbjct: 17  EHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNINDNYILDEGAKFIGTMKQL 76

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             L +K+C  I +   + +S L NL  L +  + + D G +Y+  +  LT LN+    +T
Sbjct: 77  TLLKMKYCE-IREEGARAISELKNLTFLNLHGNFIGDKGASYISEMVNLTHLNVGSTQLT 135

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK---VLNLGFNEITDECLVHLKG 177
           A     +S L +L  L ++  Q+   G +  S +  L+    L++  N I D+ + +L  
Sbjct: 136 AEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLDVSGNSILDQGVQYLSE 195

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-- 235
           ++NL  L++ S  +G +G+ ++ G+  L  L +S   +GSSG + +SG++NL S+N+S  
Sbjct: 196 MSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSNDLGSSGAKLISGMSNLTSLNISAN 255

Query: 236 --------FTG--------------ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
                   F G              I D   + +  +  LKSLN    +I+  G  +++ 
Sbjct: 256 RLLGEGAKFIGEMHNVTILVIRNNDIGDEGAKFICKMKQLKSLNAVYNRISSKGFESISE 315

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
           +  LT LD+    I   GA  +R  KNL SL +    + D G+K I  L
Sbjct: 316 MKQLTSLDIGYNSIDSKGAKSVRKLKNLTSLNVRSNMIDDEGLKAIGQL 364


>gi|46447569|ref|YP_008934.1| hypothetical protein pc1935 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401210|emb|CAF24659.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 504

 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 104/296 (35%), Positives = 148/296 (50%), Gaps = 49/296 (16%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWC 68
           NL +L FR+   +TA G+     L+ L  LDL  C  +   GL +L  L+ L+ LN+   
Sbjct: 251 NLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSGH 310

Query: 69  NCITDSDMKPLSGLTNLKSLQIS--CS-KVTDSGIAYLKGLQKLTLLNLEGC-PVTAACL 124
             +TD+ +  LS LT L+ L +S  C+ K+TD+G+A+L+ L  L  LNL  C   T A L
Sbjct: 311 GYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGL 370

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             L  L +L +LNL+ C            IG+          +    L HL+ LT L+ L
Sbjct: 371 AHLRPLTALQHLNLSGC----------GGIGA---------GLASAGLAHLRPLTALQHL 411

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           NL  CG+ D+ L +LT L  L+ L+LS+   +  +GL HL+ L  L+ +NLS        
Sbjct: 412 NLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLS-------- 463

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNF 298
                             Q+T+ GLA L  LT L HL+L G + +TD G A LR F
Sbjct: 464 ---------------KCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLARLRPF 504



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/263 (38%), Positives = 140/263 (53%), Gaps = 14/263 (5%)

Query: 93  SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEK 150
           + +TD  +  LK  + L  L    CP +TAA L  L  L +L +L+LN C  L+D G   
Sbjct: 236 AYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAH 295

Query: 151 FSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC---GIGDEGLVNLTGLCNLK 206
            + + +LK LNL G   +TD  L HL  LT L+ LNL  C    + D GL +L  L  LK
Sbjct: 296 LAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGLAHLRPLVALK 355

Query: 207 CLELSD-TQVGSSGLRHLSGLTNLESINLSF-----TGISDGSLRKLAGLSSLKSLNLDA 260
            L LS  ++   +GL HL  LT L+ +NLS       G++   L  L  L++L+ LNL  
Sbjct: 356 YLNLSRCSKFTGAGLAHLRPLTALQHLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSW 415

Query: 261 RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKH 318
             +TD  LA LT L  L +LDL     +TD+G A+L     L+ L +     LT+AG+ H
Sbjct: 416 CGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAH 475

Query: 319 IKDLSSLTLLNLSQNCNLTDKTL 341
           +  L++L  LNLS   NLTD  L
Sbjct: 476 LIPLTALQHLNLSGCSNLTDDGL 498



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 129/241 (53%), Gaps = 13/241 (5%)

Query: 167 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLS 224
           +T   L +L+ L  L+ L+L+ C  + D GL +L  L  LK L LS    +  +GL HLS
Sbjct: 263 LTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLS 322

Query: 225 GLTNLESINLSF---TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHL 280
            LT L+ +NLS      ++D  L  L  L +LK LNL    + T  GLA L  LT L HL
Sbjct: 323 PLTALQHLNLSECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHL 382

Query: 281 DL-----FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
           +L      GA +  +G A+LR    L+ L +   G+TD  + H+  L +L  L+LS   +
Sbjct: 383 NLSGCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWH 442

Query: 336 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQ 393
           LTD  L  ++ L  L  LN+S   ++T+AGL HL PL  L+ L L  C  +T + + RL+
Sbjct: 443 LTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLARLR 502

Query: 394 S 394
            
Sbjct: 503 P 503



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 109/221 (49%), Gaps = 30/221 (13%)

Query: 181 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-T 237
           +E+LN  +   + D  L+ L    NLK L       + ++GL +L  L  L+ ++L++  
Sbjct: 227 IEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCY 286

Query: 238 GISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
            ++D  L  LA L +LK LNL     +TD GLA L+ LT L HL+L              
Sbjct: 287 NLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLS------------- 333

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
                   E C   LTDAG+ H++ L +L  LNLS+    T   L  +  LT L  LN+S
Sbjct: 334 --------ECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLS 385

Query: 357 N-----SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
                 + + SAGL HL+PL  L+ L L  C VT +++  L
Sbjct: 386 GCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHL 426


>gi|46445969|ref|YP_007334.1| hypothetical protein pc0335 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399610|emb|CAF23059.1| hypothetical protein pc0335 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 642

 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 170/338 (50%), Gaps = 42/338 (12%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           ++E+LN      +TD+ +  L    NLK LQ+ +C   TD+G+A+L  L  L  LNL  C
Sbjct: 305 EIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYC 364

Query: 118 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 174
             +T A L  L+ L  L +LNL+ C  L+D G    + + +L  LNL + N++TD  L H
Sbjct: 365 KNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDAGLAH 424

Query: 175 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNL------KCLELSDTQVGSSGLRHLSGLT 227
           L  L  L  L+L  C  + + GL +L  L  L       C  L+D     +GL HLS L 
Sbjct: 425 LTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTD-----AGLAHLSSLV 479

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGAR 286
            L+ +             KL    SL          TD GLA L  L  LTHLDL +   
Sbjct: 480 ALQHL-------------KLCCCVSL----------TDAGLAHLAPLVALTHLDLSWCFN 516

Query: 287 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           ITD+G A+L     L+ L + G   LTD G+ H+  L +L  L L++  NLTD  L  ++
Sbjct: 517 ITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLGLNRCDNLTDAGLAHLT 576

Query: 346 GLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 382
            L  L  L++S  R +T+AGL HL PL  L+ L L  C
Sbjct: 577 PLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCC 614



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 139/301 (46%), Gaps = 63/301 (20%)

Query: 150 KFSKI-----GSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 202
           +F KI       ++ LN   N  +TD  L+ LK   NL+ L L +C    D GL +LT L
Sbjct: 294 EFEKILNHFSNEIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPL 353

Query: 203 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 260
             L+ L LS  + +  +GL HL+ L  L+ +NLS    ++D  L  L  L +L  LNL  
Sbjct: 354 MALQHLNLSYCKNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSW 413

Query: 261 -RQITDTGLAALTSLTGLTHLDL--------------------------FGARITDSGAA 293
             ++TD GLA LT L  LTHLDL                          +   +TD+G A
Sbjct: 414 CNKLTDAGLAHLTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLA 473

Query: 294 YLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
           +L +   L+ L++C    LTDAG+ H+  L +LT L+LS   N+TD  L  ++ L  L  
Sbjct: 474 HLSSLVALQHLKLCCCVSLTDAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQH 533

Query: 353 LNVSNSR--------------------------ITSAGLRHLKPLKNLRSLTLESCKVTA 386
           L +S  R                          +T AGL HL PL NL+ L L  C+   
Sbjct: 534 LGLSGCRRLTDVGLAHLTRLVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLT 593

Query: 387 N 387
           N
Sbjct: 594 N 594



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 154/295 (52%), Gaps = 21/295 (7%)

Query: 6   SGLSNLTSL--------SFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKG 56
           +GL++LT L        S+ +N  +T  G+   A L+ L  L+L  C  +   GL +L  
Sbjct: 345 AGLAHLTPLMALQHLNLSYCKN--LTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTP 402

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 115
           L+ L  LN+ WCN +TD+ +  L+ L  L  L +  C K+T+ G+A+L  L  L  L+L 
Sbjct: 403 LVALTHLNLSWCNKLTDAGLAHLTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLN 462

Query: 116 GCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG--FNEITDEC 171
            C  +T A L  LS+L +L +L L  C  L+D G    + + +L  L+L   FN ITD  
Sbjct: 463 YCRNLTDAGLAHLSSLVALQHLKLCCCVSLTDAGLAHLAPLVALTHLDLSWCFN-ITDAG 521

Query: 172 LVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
           L HL  L  L+ L L  C  + D GL +LT L  L+ L L+    +  +GL HL+ L NL
Sbjct: 522 LAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLGLNRCDNLTDAGLAHLTPLINL 581

Query: 230 ESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 282
           + ++LS    +++  L  L  L +L+ L+L    ++T   LA    L    HLDL
Sbjct: 582 QHLDLSECRKLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAHFKFLVAKPHLDL 636



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L+ L  L  L   R + +T  G+     LINL  LDL  C ++ + GL +L  L+ L+ 
Sbjct: 549 HLTRLVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQR 608

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 94
           L+++ CN +T + +     L     L +   K
Sbjct: 609 LDLRCCNKLTGARLAHFKFLVAKPHLDLRWYK 640


>gi|149177419|ref|ZP_01856023.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148843752|gb|EDL58111.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 375

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 142/266 (53%), Gaps = 2/266 (0%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I D+ +K ++GL++L+SL ++ + +TD+ +  +  +  L  L+L  C +    +  L+ L
Sbjct: 84  IDDAALKEIAGLSHLRSLLLNETPITDAALESVGKVTTLENLDLRNCSLNNKAISYLTGL 143

Query: 131 GSLFYLNLN-RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
             L  L L+    + DD     +++ +LK L L F  ++ + L  LK L  LE L L   
Sbjct: 144 SKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLNKLEELYLAKT 203

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI-SDGSLRKLA 248
            + D+GL  LT    LK   LS  Q+   GL   + +  LE I+LS   + SD  ++ L+
Sbjct: 204 LVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSLLSDAGMKHLS 263

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
           GL  LK LNL    +TD G+  L  LT L  L+L   R+T++G  YL++ + L  L +  
Sbjct: 264 GLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYLKDMQKLEFLHLGS 323

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNC 334
             ++D G+KH++ L+SL  L L++  
Sbjct: 324 TAVSDEGLKHLEPLTSLKELKLTRTA 349



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/270 (34%), Positives = 148/270 (54%), Gaps = 2/270 (0%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + ++GLS+L SL       IT   +++   +  L  LDL  C+  +  +  L GL KL++
Sbjct: 90  KEIAGLSHLRSL-LLNETPITDAALESVGKVTTLENLDLRNCSLNNKAISYLTGLSKLKA 148

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L +   + I D  M  ++ LTNLK+L +    V+  G++ LK L KL  L L    V   
Sbjct: 149 LRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLNKLEELYLAKTLVDDD 208

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI-TDECLVHLKGLTNL 181
            L +L+    L    L++ Q+SD+G   F+KI  L+ ++L  N + +D  + HL GL  L
Sbjct: 209 GLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSLLSDAGMKHLSGLGKL 268

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           + LNL   G+ D G+  L GL +L+ L L +T++ ++GL++L  +  LE ++L  T +SD
Sbjct: 269 KKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYLKDMQKLEFLHLGSTAVSD 328

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
             L+ L  L+SLK L L    +T+ G+A L
Sbjct: 329 EGLKHLEPLTSLKELKLTRTAVTEKGVAEL 358



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 141/266 (53%), Gaps = 3/266 (1%)

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
           G +  ++    ++ D   ++ + +  L+ L L    ITD  L  +  +T LE+L+L +C 
Sbjct: 72  GYVIEVDFRGTKIDDAALKEIAGLSHLRSLLLNETPITDAALESVGKVTTLENLDLRNCS 131

Query: 191 IGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
           + ++ +  LTGL  LK L LS ++ +    +  ++ LTNL+++ L F  +S   L +L  
Sbjct: 132 LNNKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKD 191

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           L+ L+ L L    + D GLA LT    L    L   +I+D G A       L  +++   
Sbjct: 192 LNKLEELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSEN 251

Query: 310 G-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
             L+DAG+KH+  L  L  LNL +   LTD  +E + GLT L  LN+ N+R+T+AGL++L
Sbjct: 252 SLLSDAGMKHLSGLGKLKKLNLWR-VGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYL 310

Query: 369 KPLKNLRSLTLESCKVTANDIKRLQS 394
           K ++ L  L L S  V+   +K L+ 
Sbjct: 311 KDMQKLEFLHLGSTAVSDEGLKHLEP 336



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 149/290 (51%), Gaps = 4/290 (1%)

Query: 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
           ++  G  +  A L  ++ L  L  L LN   ++D   E   K+ +L+ L+L    + ++ 
Sbjct: 77  VDFRGTKIDDAALKEIAGLSHLRSLLLNETPITDAALESVGKVTTLENLDLRNCSLNNKA 136

Query: 172 LVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
           + +L GL+ L++L L  +  I D+ + ++  L NLK L L    V   GL  L  L  LE
Sbjct: 137 ISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLNKLE 196

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITD 289
            + L+ T + D  L  L     LK   L   QI+D GLA    +  L  +DL   + ++D
Sbjct: 197 ELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSLLSD 256

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
           +G  +L     L+ L +   GLTDAGV+ ++ L+SL  LNL  N  LT+  L+ +  +  
Sbjct: 257 AGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLD-NTRLTNAGLKYLKDMQK 315

Query: 350 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
           L  L++ ++ ++  GL+HL+PL +L+ L L    VT   +  L+ + LPN
Sbjct: 316 LEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTAVTEKGVAELKKK-LPN 364


>gi|254411467|ref|ZP_05025244.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
 gi|196181968|gb|EDX76955.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
          Length = 577

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 146/403 (36%), Positives = 206/403 (51%), Gaps = 59/403 (14%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LSGL NLT L    +N IT   +   +GL NL +L L+    I   +  L GL  L  LN
Sbjct: 154 LSGLINLTRL-ILFSNQIT--DITPLSGLTNLTELSLDNNQIID--VTPLSGLANLTELN 208

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           + + N IT+     LSGLTNL  L +S +++T+  ++ L  L++L L        T   +
Sbjct: 209 L-YNNQITEVS---LSGLTNLTELYLSNNQITEVNLSGLTNLRRLYL-------STNQII 257

Query: 125 D--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           D   LS L +L  L+L   Q+ D      S + +L  L+L +N+I D  +  L GLTNL 
Sbjct: 258 DISPLSGLTNLTELDLKYNQIKD--VSPLSGLTNLTELDLKYNQIKD--VSPLSGLTNLT 313

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV-----------------GSSGLR---H 222
            L L S  I D  +  L+GL NL  L LSD ++                 GS+ ++    
Sbjct: 314 GLYLSSNQIKD--ISPLSGLTNLTLLYLSDNKIKDISPLSGLINLTGLDLGSNKIKDISP 371

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           LSGL NL  ++LS   I D  +  L+GL++L   +LD  QIT+    +L+ LT LT L L
Sbjct: 372 LSGLINLTGLDLSSNKIKD--ISPLSGLTNLTWFSLDNNQITE---VSLSGLTNLTELYL 426

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
              +ITD   + L    NL  L +    +TD  V  +  L++LT+LNLS N  +TD +L 
Sbjct: 427 RNNQITD--VSSLSELTNLTRLVLNNNQITD--VSPLSGLTNLTVLNLSNN-QITDVSL- 480

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
             SGLT L  LN+SN++IT      L  L NL  L L S ++T
Sbjct: 481 --SGLTNLTVLNLSNNQITDVS--PLSGLTNLTGLNLISNQIT 519



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 138/380 (36%), Positives = 198/380 (52%), Gaps = 37/380 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LSGL+NLT L+   NN IT     + +GL NL +L L          VNL GL  L  L 
Sbjct: 198 LSGLANLTELNLY-NNQITE---VSLSGLTNLTELYLSNNQITE---VNLSGLTNLRRLY 250

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +     I   D+ PLSGLTNL  L +  +++ D  ++ L GL  LT L+L+   +     
Sbjct: 251 LSTNQII---DISPLSGLTNLTELDLKYNQIKD--VSPLSGLTNLTELDLKYNQIKDVS- 304

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             LS L +L  L L+  Q+ D      S + +L +L L  N+I D  +  L GL NL  L
Sbjct: 305 -PLSGLTNLTGLYLSSNQIKD--ISPLSGLTNLTLLYLSDNKIKD--ISPLSGLINLTGL 359

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           +L S  I D  +  L+GL NL  L+LS  ++    +  LSGLTNL   +L    I++ SL
Sbjct: 360 DLGSNKIKD--ISPLSGLINLTGLDLSSNKI--KDISPLSGLTNLTWFSLDNNQITEVSL 415

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
              +GL++L  L L   QITD  +++L+ LT LT L L   +ITD   + L    NL  L
Sbjct: 416 ---SGLTNLTELYLRNNQITD--VSSLSELTNLTRLVLNNNQITD--VSPLSGLTNLTVL 468

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
            +    +TD  +     L++LT+LNLS N  +TD  +  +SGLT L  LN+ +++IT   
Sbjct: 469 NLSNNQITDVSLSG---LTNLTVLNLSNN-QITD--VSPLSGLTNLTGLNLISNQITDVS 522

Query: 365 LRHLKPLKNLRSLTLESCKV 384
           +  L  L NL  L L + ++
Sbjct: 523 I--LSGLTNLTVLILSNNQI 540



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 140/395 (35%), Positives = 201/395 (50%), Gaps = 49/395 (12%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LSGL+NLT L +  NN IT   +   +GL NL +L L     I   +  L GL  L  L+
Sbjct: 219 LSGLTNLTEL-YLSNNQITEVNL---SGLTNLRRLYLSTNQIID--ISPLSGLTNLTELD 272

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +K+       D+ PLSGLTNL  L +  +++ D  ++ L GL  LT     G  +++  +
Sbjct: 273 LKYNQI---KDVSPLSGLTNLTELDLKYNQIKD--VSPLSGLTNLT-----GLYLSSNQI 322

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGLTNL 181
             +S L  L   NL    LSD+  +  S +    +L  L+LG N+I D  +  L GL NL
Sbjct: 323 KDISPLSGLT--NLTLLYLSDNKIKDISPLSGLINLTGLDLGSNKIKD--ISPLSGLINL 378

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L+L S  I D  +  L+GL NL    L + Q+       LSGLTNL  + L    I+D
Sbjct: 379 TGLDLSSNKIKD--ISPLSGLTNLTWFSLDNNQITE---VSLSGLTNLTELYLRNNQITD 433

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
            S   L+ L++L  L L+  QITD  ++ L+ LT LT L+L   +ITD     L    NL
Sbjct: 434 VS--SLSELTNLTRLVLNNNQITD--VSPLSGLTNLTVLNLSNNQITD---VSLSGLTNL 486

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
             L +    +TD  V  +  L++LT LNL  N  +TD  + ++SGLT L  L +SN++I 
Sbjct: 487 TVLNLSNNQITD--VSPLSGLTNLTGLNLISN-QITD--VSILSGLTNLTVLILSNNQI- 540

Query: 362 SAGLRHLKPLKNLRSLTL-------ESCKVTANDI 389
              +  L  L NLR L L       ++C V+  D+
Sbjct: 541 -KDVSPLSGLTNLRRLYLGDNPIPQQTCPVSPPDV 574



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 129/351 (36%), Positives = 186/351 (52%), Gaps = 34/351 (9%)

Query: 1   MTE-NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 59
           +TE NLSGL+NL  L    N  I    +   +GL NL +LDL +  +I   +  L GL  
Sbjct: 235 ITEVNLSGLTNLRRLYLSTNQII---DISPLSGLTNLTELDL-KYNQIKD-VSPLSGLTN 289

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L  L++K+       D+ PLSGLTNL  L +S +++ D  I+ L GL  LTLL L    +
Sbjct: 290 LTELDLKYNQI---KDVSPLSGLTNLTGLYLSSNQIKD--ISPLSGLTNLTLLYLSDNKI 344

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
               +  LS L +L  L+L   ++ D      S + +L  L+L  N+I D  +  L GLT
Sbjct: 345 --KDISPLSGLINLTGLDLGSNKIKD--ISPLSGLINLTGLDLSSNKIKD--ISPLSGLT 398

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           NL   +LD+  I +   V+L+GL NL  L L + Q+  + +  LS LTNL  + L+   I
Sbjct: 399 NLTWFSLDNNQITE---VSLSGLTNLTELYLRNNQI--TDVSSLSELTNLTRLVLNNNQI 453

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           +D S   L+GL++L  LNL   QITD  L+ LT+   LT L+L   +ITD   + L    
Sbjct: 454 TDVS--PLSGLTNLTVLNLSNNQITDVSLSGLTN---LTVLNLSNNQITD--VSPLSGLT 506

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
           NL  L +    +TD  +  +  L++LT+L LS N     K +  +SGLT L
Sbjct: 507 NLTGLNLISNQITDVSI--LSGLTNLTVLILSNN---QIKDVSPLSGLTNL 552



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 168/338 (49%), Gaps = 48/338 (14%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           +D+ PLSGLTNL  L +  +++ D  +  L  L  LT LNL    +       LS L +L
Sbjct: 83  TDISPLSGLTNLIGLSLWGNQIKD--VTPLSELTNLTELNLYNNQIKDVT--PLSELTNL 138

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             LNL   Q+ D      S + +L  L L  N+ITD  +  L GLTNL  L+LD+  I D
Sbjct: 139 TELNLYNNQIKD--VTPLSGLINLTRLILFSNQITD--ITPLSGLTNLTELSLDNNQIID 194

Query: 194 ----EGLVNLT---------------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
                GL NLT               GL NL  L LS+ Q+      +LSGLTNL  + L
Sbjct: 195 VTPLSGLANLTELNLYNNQITEVSLSGLTNLTELYLSNNQITE---VNLSGLTNLRRLYL 251

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           S   I D  +  L+GL++L  L+L   QI D  ++ L+ LT LT LDL   +I D   + 
Sbjct: 252 STNQIID--ISPLSGLTNLTELDLKYNQIKD--VSPLSGLTNLTELDLKYNQIKD--VSP 305

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           L    NL  L +    + D  +  +  L++LTLL LS      D  ++ IS L+GL+  N
Sbjct: 306 LSGLTNLTGLYLSSNQIKD--ISPLSGLTNLTLLYLS------DNKIKDISPLSGLI--N 355

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           ++   + S  ++ + PL  L +LT     +++N IK +
Sbjct: 356 LTGLDLGSNKIKDISPLSGLINLT--GLDLSSNKIKDI 391


>gi|290979162|ref|XP_002672303.1| predicted protein [Naegleria gruberi]
 gi|284085879|gb|EFC39559.1| predicted protein [Naegleria gruberi]
          Length = 371

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 179/375 (47%), Gaps = 27/375 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S L  LT L +  +N I  +G K  + L  L  LD+        G+ ++  L +L  L 
Sbjct: 22  ISELKQLTHL-YISSNKIGVEGAKYISELKQLTNLDISYNNIGAEGVEHIGNLKQLTFLC 80

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I + N I D   K LS L  L  L  + + +   G+ Y+  L++L+              
Sbjct: 81  I-YHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVKYIIKLKQLS-------------- 125

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
                     YLN+   ++ D+G +  S++  L  LN+  + I  + + H+  +  L  L
Sbjct: 126 ----------YLNICSNKVGDEGAKYLSELKQLTNLNISNSNICAKGVEHITEMNQLTIL 175

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           N+ +  IG EG   +  L  L CL +  + +   G +++S +  L  +N+S+  I     
Sbjct: 176 NISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMKQLTDLNISYNNIGIEGA 235

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + +  L  L  L +    I D G   ++ L  LT+L+++   I D GA Y+   K L +L
Sbjct: 236 KYIGKLKQLTCLTIYNNYICDEGAKYISELNQLTNLNIYSNNIGDEGAKYISELKQLTNL 295

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           +I    +   GVK+I +L+ LT+L+ S N N+ D+  + IS L  L +L++S++ I+  G
Sbjct: 296 DISVNQIGAKGVKYIAELNQLTILSASLN-NIRDEGAKYISELKQLTNLDISSNNISIEG 354

Query: 365 LRHLKPLKNLRSLTL 379
           ++  + +K+L  L +
Sbjct: 355 VKCFEEMKHLTVLEI 369



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 5/325 (1%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113
           +K L KL S N    N I   + K +S L  L  L IS +K+   G  Y+  L++LT L+
Sbjct: 1   MKSLTKLISCN----NNIGVEEAKYISELKQLTHLYISSNKIGVEGAKYISELKQLTNLD 56

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           +    + A  ++ +  L  L +L +    + D+G +  S +  L  L   FN I  E + 
Sbjct: 57  ISYNNIGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVK 116

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
           ++  L  L  LN+ S  +GDEG   L+ L  L  L +S++ + + G+ H++ +  L  +N
Sbjct: 117 YIIKLKQLSYLNICSNKVGDEGAKYLSELKQLTNLNISNSNICAKGVEHITEMNQLTILN 176

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           +S   I     + +  L  L  LN+    I   G   ++ +  LT L++    I   GA 
Sbjct: 177 ISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMKQLTDLNISYNNIGIEGAK 236

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
           Y+   K L  L I    + D G K+I +L+ LT LN+  N N+ D+  + IS L  L +L
Sbjct: 237 YIGKLKQLTCLTIYNNYICDEGAKYISELNQLTNLNIYSN-NIGDEGAKYISELKQLTNL 295

Query: 354 NVSNSRITSAGLRHLKPLKNLRSLT 378
           ++S ++I + G++++  L  L  L+
Sbjct: 296 DISVNQIGAKGVKYIAELNQLTILS 320



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 153/328 (46%), Gaps = 2/328 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S L  LT+L    NN I A+G++    L  L  L +        G  +L  L +L  L 
Sbjct: 46  ISELKQLTNLDISYNN-IGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKHLSALKQLTYLY 104

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N I    +K +  L  L  L I  +KV D G  YL  L++LT LN+    + A  +
Sbjct: 105 TAFNN-IGVEGVKYIIKLKQLSYLNICSNKVGDEGAKYLSELKQLTNLNISNSNICAKGV 163

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           + ++ +  L  LN++   +  +G +   K+  L  LN+ ++ I  E   ++  +  L  L
Sbjct: 164 EHITEMNQLTILNISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMKQLTDL 223

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           N+    IG EG   +  L  L CL + +  +   G +++S L  L ++N+    I D   
Sbjct: 224 NISYNNIGIEGAKYIGKLKQLTCLTIYNNYICDEGAKYISELNQLTNLNIYSNNIGDEGA 283

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + ++ L  L +L++   QI   G+  +  L  LT L      I D GA Y+   K L +L
Sbjct: 284 KYISELKQLTNLDISVNQIGAKGVKYIAELNQLTILSASLNNIRDEGAKYISELKQLTNL 343

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
           +I    ++  GVK  +++  LT+L + Q
Sbjct: 344 DISSNNISIEGVKCFEEMKHLTVLEIYQ 371



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 28/205 (13%)

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +K LT L S N +   IG E    ++ L  L  L +S  ++G  G +++S L  L ++++
Sbjct: 1   MKSLTKLISCNNN---IGVEEAKYISELKQLTHLYISSNKIGVEGAKYISELKQLTNLDI 57

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           S+  I    +  +  L  L  L +    I D G   L++L  LT+L      I   G  Y
Sbjct: 58  SYNNIGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVKY 117

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           +   K L  L IC   + D G K++ +L  LT                         +LN
Sbjct: 118 IIKLKQLSYLNICSNKVGDEGAKYLSELKQLT-------------------------NLN 152

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTL 379
           +SNS I + G+ H+  +  L  L +
Sbjct: 153 ISNSNICAKGVEHITEMNQLTILNI 177


>gi|54294508|ref|YP_126923.1| hypothetical protein lpl1579 [Legionella pneumophila str. Lens]
 gi|53754340|emb|CAH15819.1| hypothetical protein lpl1579 [Legionella pneumophila str. Lens]
          Length = 464

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 161/334 (48%), Gaps = 2/334 (0%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           +++SLN++  N I D   K L+   +L +L +  + + D G   L   Q L+ LNL    
Sbjct: 45  EIKSLNLR-NNNIGDEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLSYNN 103

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           + A    +L+A  SL  LNL    + D+G +  +   SL  LNL +N I DE    L   
Sbjct: 104 IGAEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLRYNNIGDEGAKALAAN 163

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            +L +LNL +  IGDEG   L    +L  L LS   + + G + L+   +L ++NL +  
Sbjct: 164 QSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLRYNN 223

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           I     + LA   SL +LNL    I D G  AL +   L+ L+L    I D GA  L   
Sbjct: 224 IRAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAAN 283

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
           ++L +L +    + D G K +    SL+ LNLS N N+  +  + ++    L +LN+S +
Sbjct: 284 QSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYN-NIRAEGAKALAANQSLSTLNLSYN 342

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            I   G + L   ++L +L L    + A   K L
Sbjct: 343 NIGDEGAKALAANQSLSTLNLSYNNIRAEGAKAL 376



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 150/323 (46%), Gaps = 2/323 (0%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 70
           L++L+ R NN I  +G KA A   +L  L+L        G   L     L +LN++  N 
Sbjct: 70  LSTLNLRANN-IGDEGAKALAANQSLSTLNLSYNNIGAEGAKALAANQSLSTLNLR-ANN 127

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I D   K L+   +L +L +  + + D G   L   Q L+ LNL    +      +L+A 
Sbjct: 128 IGDEGAKALAANQSLSTLNLRYNNIGDEGAKALAANQSLSTLNLRNNNIGDEGAKALAAN 187

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            SL  LNL+   +  +G +  +   SL  LNL +N I  E    L    +L +LNL    
Sbjct: 188 QSLSTLNLSYNNIRAEGAKALAANQSLSTLNLRYNNIRAEGAKALAANQSLSTLNLSYNN 247

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           IGDEG   L    +L  L LS   +G  G + L+   +L ++NLS+  I D   + LA  
Sbjct: 248 IGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAAN 307

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
            SL +LNL    I   G  AL +   L+ L+L    I D GA  L   ++L +L +    
Sbjct: 308 QSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNN 367

Query: 311 LTDAGVKHIKDLSSLTLLNLSQN 333
           +   G K +    SL+ LNLS N
Sbjct: 368 IRAEGAKALAANQSLSTLNLSYN 390



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 143/309 (46%), Gaps = 1/309 (0%)

Query: 84  NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 143
           NL + +++   + +  + +L    ++  LNL    +      +L+A  SL  LNL    +
Sbjct: 21  NLSNQKLNAQDIKELIVPFLNTNPEIKSLNLRNNNIGDEGAKALAANQSLSTLNLRANNI 80

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
            D+G +  +   SL  LNL +N I  E    L    +L +LNL +  IGDEG   L    
Sbjct: 81  GDEGAKALAANQSLSTLNLSYNNIGAEGAKALAANQSLSTLNLRANNIGDEGAKALAANQ 140

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           +L  L L    +G  G + L+   +L ++NL    I D   + LA   SL +LNL    I
Sbjct: 141 SLSTLNLRYNNIGDEGAKALAANQSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNI 200

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
              G  AL +   L+ L+L    I   GA  L   ++L +L +    + D G K +    
Sbjct: 201 RAEGAKALAANQSLSTLNLRYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQ 260

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           SL+ LNLS N N+ D+  + ++    L +LN+S + I   G + L   ++L +L L    
Sbjct: 261 SLSTLNLSYN-NIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNN 319

Query: 384 VTANDIKRL 392
           + A   K L
Sbjct: 320 IRAEGAKAL 328


>gi|290996081|ref|XP_002680611.1| predicted protein [Naegleria gruberi]
 gi|284094232|gb|EFC47867.1| predicted protein [Naegleria gruberi]
          Length = 412

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 158/313 (50%), Gaps = 19/313 (6%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           + K ++ +  L SL IS +++ D G  Y+  +++LT L++    +       +S +  L 
Sbjct: 118 EAKFITEMKQLTSLDISENQIGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLT 177

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
            LN++   +SD+G +  S++  L  L++  N I DE   +++ +  L SLN+    I DE
Sbjct: 178 SLNISYNAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSISDE 237

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           G   ++ +  L  L++   ++   G + +S +  L S+++S   I D  ++ L+ +  L 
Sbjct: 238 GAKFISEMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLT 297

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
           SL +   +IT                  +  +I++ GA ++   K L SL+I    ++D 
Sbjct: 298 SLTISGNEIT------------------YCNQISEEGAKFISEMKQLTSLDISYNLISDE 339

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
           G K+I ++  LT LN+S N  ++ +  + IS +  L SL++ ++RI   G +++  +K L
Sbjct: 340 GAKYISEMKQLTSLNISYNS-ISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQL 398

Query: 375 RSLTLESCKVTAN 387
            SL +   +  +N
Sbjct: 399 TSLNISDNQFNSN 411



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 145/283 (51%), Gaps = 7/283 (2%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SL+I   N I D   K +S +  L SL IS  ++ D G  Y+  +++LT LN+  
Sbjct: 125 MKQLTSLDIS-ENQIGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLTSLNISY 183

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             ++      +S +  L  L++ +  + D+G +   ++  L  LN+ +N I+DE    + 
Sbjct: 184 NAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSISDEGAKFIS 243

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            +  L SL++    I  EG   ++ +  L  L++SD ++G  G+++LS +  L S+ +S 
Sbjct: 244 EMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTISG 303

Query: 237 ------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
                   IS+   + ++ +  L SL++    I+D G   ++ +  LT L++    I+  
Sbjct: 304 NEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNSISGE 363

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           GA ++   K L SL+I    + D G K+I ++  LT LN+S N
Sbjct: 364 GAKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDN 406



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 143/309 (46%), Gaps = 32/309 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           ++ +  LTSL    N  I  +G K  + +  L  LD+        G   +  + +L SLN
Sbjct: 122 ITEMKQLTSLDISENQ-IGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLTSLN 180

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I + N I+D   K +S +  L SL I  + + D G  Y++ +++LT LN+    +     
Sbjct: 181 ISY-NAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSI----- 234

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
                              SD+G +  S++  L  L++ FNEI+ E    +  +  L SL
Sbjct: 235 -------------------SDEGAKFISEMKQLTSLDIVFNEISGEGAKFISEMKQLTSL 275

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSD------TQVGSSGLRHLSGLTNLESINLSFTG 238
           ++    IGDEG+  L+ +  L  L +S        Q+   G + +S +  L S+++S+  
Sbjct: 276 DISDNEIGDEGVKYLSEMKQLTSLTISGNEITYCNQISEEGAKFISEMKQLTSLDISYNL 335

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           ISD   + ++ +  L SLN+    I+  G   ++ +  LT LD+   RI D GA Y+   
Sbjct: 336 ISDEGAKYISEMKQLTSLNISYNSISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYISEM 395

Query: 299 KNLRSLEIC 307
           K L SL I 
Sbjct: 396 KQLTSLNIS 404



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 32/243 (13%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S +  LTSL+   N AI+ +G K  + +  L+ L + +      G   ++ + +L SLN
Sbjct: 170 ISEMKQLTSLNISYN-AISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLN 228

Query: 65  IKWCNCITD------SDMKPL------------------SGLTNLKSLQISCSKVTDSGI 100
           I + N I+D      S+MK L                  S +  L SL IS +++ D G+
Sbjct: 229 ISY-NSISDEGAKFISEMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGV 287

Query: 101 AYLKGLQKLTLLNLEGCPVTAACLDS------LSALGSLFYLNLNRCQLSDDGCEKFSKI 154
            YL  +++LT L + G  +T     S      +S +  L  L+++   +SD+G +  S++
Sbjct: 288 KYLSEMKQLTSLTISGNEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEM 347

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
             L  LN+ +N I+ E    +  +  L SL++ S  IGDEG   ++ +  L  L +SD Q
Sbjct: 348 KQLTSLNISYNSISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDNQ 407

Query: 215 VGS 217
             S
Sbjct: 408 FNS 410


>gi|46447589|ref|YP_008954.1| hypothetical protein pc1955 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401230|emb|CAF24679.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 454

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/255 (38%), Positives = 140/255 (54%), Gaps = 19/255 (7%)

Query: 154 IGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK----- 206
           +  ++ LN   N  + D  L+ LK   NL+ L+L++C  I D+GL +L  L +L+     
Sbjct: 194 LDEIEALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLY 253

Query: 207 -CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQI 263
            C+ L+D     +GL HL+ LT L+ +NLS+   I+D  L  L  L+ L+ LNL D   +
Sbjct: 254 FCVNLTD-----AGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENL 308

Query: 264 TDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 321
           TD GLA LT LT L +L+L     +T+ G A+L     L+ L +     LTDAG  H+  
Sbjct: 309 TDAGLAHLTPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLAS 368

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLE 380
           L++L  L+LS   NLTD  L  ++ LT L  L +S  R +T  GL HL PL  L+ L L 
Sbjct: 369 LTALQHLDLSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLR 428

Query: 381 SC-KVTANDIKRLQS 394
            C KVT   + R ++
Sbjct: 429 ECDKVTDAGLARFKT 443



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 111/315 (35%), Positives = 163/315 (51%), Gaps = 16/315 (5%)

Query: 50  GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 109
            LV LKGL+       + C     +D+K    LT + +L    S++T+        L ++
Sbjct: 145 SLVGLKGLLNF----AQQCQL---NDLKNYLELTVVSALLNQASQLTEFQRIINHFLDEI 197

Query: 110 TLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NE 166
             LN  G   +  A L +L    +L  L+L  CQ ++DDG    + + SL+ LNL F   
Sbjct: 198 EALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCVN 257

Query: 167 ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS 224
           +TD  L HL  LT L+ LNL  C  I D GL +LT L +L+ L LSD + +  +GL HL+
Sbjct: 258 LTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHLT 317

Query: 225 GLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 282
            LT L  +NLS    +++  L  LA L+ L+ LNL     +TD G + L SLT L HLDL
Sbjct: 318 PLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLDL 377

Query: 283 FGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
                +TD+G AYL +   L+ L +     LTD G+ H+  L++L  L+L +   +TD  
Sbjct: 378 SDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDAG 437

Query: 341 LELISGLTGLVSLNV 355
           L     L   ++L +
Sbjct: 438 LARFKTLATSLNLKI 452



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 122/233 (52%), Gaps = 9/233 (3%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKW 67
            NL  L      AIT  G+   A L +L  L+L  C  +   GL +L  L  L+ LN+ +
Sbjct: 220 ENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCVNLTDAGLAHLTPLTALQHLNLSY 279

Query: 68  CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLD 125
           C  ITD+ +  L+ LT+L+ L +S C  +TD+G+A+L  L  L  LNL  C  +T   L 
Sbjct: 280 CWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHLTPLTALLYLNLSKCYHLTNVGLA 339

Query: 126 SLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLES 183
            L+ L  L YLNL  C  L+D G    + + +L+ L+L   E +TD  L +L  LT L+ 
Sbjct: 340 HLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLDLSDCENLTDAGLAYLASLTALQY 399

Query: 184 LNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 234
           L L  C  + D GL +LT L  L+ L+L +  +V  +GL     L    S+NL
Sbjct: 400 LGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDAGLARFKTLAT--SLNL 450



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/212 (38%), Positives = 113/212 (53%), Gaps = 23/212 (10%)

Query: 191 IGDEGLVNLTGLCNLK----CLELSDTQVGSSGLRHLSGLTNLESI---------NLSFT 237
           +G +GL+N    C L      LEL+   V S+ L   S LT  + I          L+F+
Sbjct: 147 VGLKGLLNFAQQCQLNDLKNYLELT---VVSALLNQASQLTEFQRIINHFLDEIEALNFS 203

Query: 238 G---ISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDL-FGARITDSGA 292
           G   ++D  L  L    +LK L+L+A Q ITD GLA L  LT L HL+L F   +TD+G 
Sbjct: 204 GNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCVNLTDAGL 263

Query: 293 AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
           A+L     L+ L +     +TDAG+ H+  L+ L  LNLS   NLTD  L  ++ LT L+
Sbjct: 264 AHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHLTPLTALL 323

Query: 352 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 382
            LN+S    +T+ GL HL PL  L+ L L+ C
Sbjct: 324 YLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWC 355



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 4/157 (2%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L+ L++L  L+      +T  G+     L  L+ L+L +C  + + GL +L  L  L+ 
Sbjct: 290 HLTPLTDLQHLNLSDCENLTDAGLAHLTPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQY 349

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           LN+KWC  +TD+    L+ LT L+ L +S C  +TD+G+AYL  L  L  L L  C  +T
Sbjct: 350 LNLKWCWNLTDAGFSHLASLTALQHLDLSDCENLTDAGLAYLASLTALQYLGLSQCRNLT 409

Query: 121 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGS 156
              L  L+ L +L +L+L  C +++D G  +F  + +
Sbjct: 410 DVGLAHLTPLTALQHLDLRECDKVTDAGLARFKTLAT 446


>gi|149918767|ref|ZP_01907254.1| hypothetical protein PPSIR1_31833 [Plesiocystis pacifica SIR-1]
 gi|149820368|gb|EDM79784.1| hypothetical protein PPSIR1_31833 [Plesiocystis pacifica SIR-1]
          Length = 541

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/243 (34%), Positives = 118/243 (48%), Gaps = 2/243 (0%)

Query: 68  CNC--ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 125
           C+C    D  +  L  L  L+ L++  S VT +G+ +L     L  L L GC + +    
Sbjct: 294 CDCPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEGFT 353

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           +L+AL  L  L +    L D   E    + SL+ L LG +   D     L  L NLE L+
Sbjct: 354 ALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFGDRAAQELAPLVNLERLD 413

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           L +  + DEGL +L G+  L+ LEL  T+V   GL HL GL+ LE + L  T + D  + 
Sbjct: 414 LGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVA 473

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
            LA L +L+ L LD   ITD G+A L  L+ L  L+L    +T  G   L     L  + 
Sbjct: 474 HLAKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVN 533

Query: 306 ICG 308
           + G
Sbjct: 534 LAG 536



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 129/285 (45%), Gaps = 23/285 (8%)

Query: 70  CITDSDMKPLSGLTNLKSLQIS-----------------------CSKVTDSGIAYLKGL 106
            +T+  + PL GL +L  ++ S                       C +  D G+  L+ L
Sbjct: 251 ALTNYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRDLPIDELICDCPRFGDRGLFMLRYL 310

Query: 107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
           + L +L LE   VT+A L  L+   +L  L L  C L  +G    + +  L+ L +G   
Sbjct: 311 EGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEGFTALAALPRLRRLIVGPAS 370

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           + D     L  L +L  L L   G GD     L  L NL+ L+L +T V   GL HL+G+
Sbjct: 371 LLDGKAEGLGLLVSLRELELGLDGFGDRAAQELAPLVNLERLDLGNTAVSDEGLEHLAGM 430

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
             L  + L  T ++   L  L GLS+L+ L LD   + D G+A L  L  L  L L    
Sbjct: 431 VRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVAHLAKLGALRELRLDNTL 490

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
           ITD G A+L    +L  L +    +T  GV+ +  L  L ++NL+
Sbjct: 491 ITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVNLA 535



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 7/244 (2%)

Query: 25  QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 84
           +G+     L  L  L+LER      GLV+L     LE L ++ C+  ++     L+ L  
Sbjct: 302 RGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEG-FTALAALPR 360

Query: 85  LKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           L+ L +  + + D    G+  L  L++L  L L+G    AA    L+ L +L  L+L   
Sbjct: 361 LRRLIVGPASLLDGKAEGLGLLVSLRELE-LGLDGFGDRAA--QELAPLVNLERLDLGNT 417

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            +SD+G E  + +  L+ L L    +T   L HL+GL+ LE L LD   + DEG+ +L  
Sbjct: 418 AVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVAHLAK 477

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L  L+ L L +T +   G+ HL+ L++LE +NL+ T ++   +  L+ L  L+ +NL   
Sbjct: 478 LGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVNLAGT 537

Query: 262 QITD 265
           +  D
Sbjct: 538 RARD 541



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 150/376 (39%), Gaps = 54/376 (14%)

Query: 59  KLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG- 116
           +L +L I  C     + +      L  L+ + I    VT + ++ L GL  L L  +   
Sbjct: 122 RLTALRISGCQGAVHAGLSAFGARLRELELVDIELDAVTVARLSQLHGLDTLILTRVRAE 181

Query: 117 -----------CP--VTAACLDSLSALGSLFYLNLNRCQLSDDGCE-------KFSKIGS 156
                       P  VT   LD  SA+  L  L  +   L  +G         + +K  S
Sbjct: 182 AEALNPLARKISPSTVTLRELDKDSAVVELVTLLRDLHHLRLEGAWVGHNTMLRVAKAKS 241

Query: 157 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-----------------------IGD 193
           L+ L +    +T+  L  LKGL +L  +     G                        GD
Sbjct: 242 LQSLAVIDTALTNYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRDLPIDELICDCPRFGD 301

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
            GL  L  L  L+ LEL  + V S+GL HL+    LE + L    +       LA L  L
Sbjct: 302 RGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEGFTALAALPRL 361

Query: 254 KSLNLDARQITD---TGLAALTSLTGLT-HLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           + L +    + D    GL  L SL  L   LD FG    D  A  L    NL  L++   
Sbjct: 362 RRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFG----DRAAQELAPLVNLERLDLGNT 417

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
            ++D G++H+  +  L  L L  +  +T   LE + GL+ L  L + ++ +   G+ HL 
Sbjct: 418 AVSDEGLEHLAGMVRLRELEL-HHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVAHLA 476

Query: 370 PLKNLRSLTLESCKVT 385
            L  LR L L++  +T
Sbjct: 477 KLGALRELRLDNTLIT 492



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 2/144 (1%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
            + L+ L NL  L    N A++ +G++  AG++ L +L+L        GL +L+GL  LE
Sbjct: 400 AQELAPLVNLERLDLG-NTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALE 458

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            L +   + + D  +  L+ L  L+ L++  + +TD G+A+L  L  L  LNL    VT+
Sbjct: 459 ILELDHTDVV-DEGVAHLAKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTS 517

Query: 122 ACLDSLSALGSLFYLNLNRCQLSD 145
             ++ LSAL  L  +NL   +  D
Sbjct: 518 EGVEVLSALPRLEVVNLAGTRARD 541



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 145/347 (41%), Gaps = 34/347 (9%)

Query: 75  DMKPLSGLT-NLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
           D+  L+  T  L +L+IS C     +G+ A+   L++L L+++E   VT A L  L  L 
Sbjct: 112 DLHALAEATPRLTALRISGCQGAVHAGLSAFGARLRELELVDIELDAVTVARLSQLHGLD 171

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI-TDECLVHL-KGLTNLESLNLDSC 189
           +L    L R +   +     ++  S   + L   E+  D  +V L   L +L  L L+  
Sbjct: 172 TLI---LTRVRAEAEALNPLARKISPSTVTL--RELDKDSAVVELVTLLRDLHHLRLEGA 226

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS--------- 240
            +G   ++ +    +L+ L + DT + +  L  L GL +L  I  S  G S         
Sbjct: 227 WVGHNTMLRVAKAKSLQSLAVIDTALTNYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRD 286

Query: 241 --------------DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
                         D  L  L  L  L+ L L+   +T  GL  L     L  L L G  
Sbjct: 287 LPIDELICDCPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCD 346

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           +   G   L     LR L +    L D   + +  L SL  L L  +    D+  + ++ 
Sbjct: 347 LDSEGFTALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLD-GFGDRAAQELAP 405

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
           L  L  L++ N+ ++  GL HL  +  LR L L   +VT + ++ LQ
Sbjct: 406 LVNLERLDLGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQ 452


>gi|283778672|ref|YP_003369427.1| hypothetical protein Psta_0882 [Pirellula staleyi DSM 6068]
 gi|283437125|gb|ADB15567.1| hypothetical protein Psta_0882 [Pirellula staleyi DSM 6068]
          Length = 450

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 138/254 (54%), Gaps = 2/254 (0%)

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
           D+G +   ++G+++ L+L  +++TD  L  L  +  ++ L L S  +   GL  L  L +
Sbjct: 193 DEGVDHVVQLGNIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVD 252

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           L+ L L    +    L+ L     L S+ L FT ++D  L KL   + L +L LDA ++T
Sbjct: 253 LEYLSLKQLPIDDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVT 312

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 324
           D G+  +  ++ L  L +   ++   G ++L    +LR L + G  L D  ++H+  L +
Sbjct: 313 DEGMLEVAKISTLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLEN 372

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           + +L L  + N+TDK +E + G+T L +L +S + +T   +  L  +++L+++ L   +V
Sbjct: 373 IEILGLD-HTNVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEV 431

Query: 385 TANDIKRLQSRDLP 398
           +A+  +RL+ R+LP
Sbjct: 432 SADGAERLR-RELP 444



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 4/238 (1%)

Query: 64  NIKWCNC----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           NI+W +     +TD+ +  L+ +  +K L +  +K++  G+A L  L  L  L+L+  P+
Sbjct: 204 NIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVDLEYLSLKQLPI 263

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
               L  L     L  L L+  +++D G  K  K   L  L L    +TDE ++ +  ++
Sbjct: 264 DDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVTDEGMLEVAKIS 323

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            L SL + +  +   G  +L  L +L+ L L   Q+    L+HL GL N+E + L  T +
Sbjct: 324 TLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLENIEILGLDHTNV 383

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
           +D  + +L G++ LK+L L    +TD  + +L+ +  L  + L G+ ++  GA  LR 
Sbjct: 384 TDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAERLRR 441



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 119/239 (49%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           L N++ L +  S VTD+ +  L  + ++  L L    ++   L +L+ L  L YL+L + 
Sbjct: 202 LGNIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVDLEYLSLKQL 261

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            + D   ++  +   L  L L F E+TD  L  L     L++L LD+  + DEG++ +  
Sbjct: 262 PIDDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVTDEGMLEVAK 321

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           +  L+ L +  TQV   G  HL  L +L  ++L    + D +L+ L GL +++ L LD  
Sbjct: 322 ISTLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLENIEILGLDHT 381

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
            +TD  +  L  +T L  L L    +TD     L   ++L+++ + G  ++  G + ++
Sbjct: 382 NVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAERLR 440



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLS 80
           +T +GM   A +  L  L +   T++ G G  +L  L  L  L++K    + D  ++ L 
Sbjct: 311 VTDEGMLEVAKISTLRSLFMP-ATQVKGPGFSHLMKLASLRYLSLKGVQ-LDDVALQHLV 368

Query: 81  GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
           GL N++ L +  + VTD  I  L G+ +L  L L    VT   ++SLS + SL  + L+ 
Sbjct: 369 GLENIEILGLDHTNVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHG 428

Query: 141 CQLSDDGCEKFSK 153
            ++S DG E+  +
Sbjct: 429 SEVSADGAERLRR 441


>gi|290979019|ref|XP_002672232.1| predicted protein [Naegleria gruberi]
 gi|284085807|gb|EFC39488.1| predicted protein [Naegleria gruberi]
          Length = 426

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 185/395 (46%), Gaps = 31/395 (7%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR---------------- 46
           E L  +  L  L+   N+ I   G K    L  L  L +  C                  
Sbjct: 26  EILDSMKELKKLNLENNSNIHPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTY 85

Query: 47  --IHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 98
             I G  + ++G      + +L+ L+I   N I     K +SGL  L  L I  +++T  
Sbjct: 86  LLITGNYIGVEGAKYIGEMKQLKQLHIANNN-IGPEGAKHISGLEQLTILNIRANEITVD 144

Query: 99  GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
           G  ++  +++LT+LN+ G  +       +S +  L  L+++   + ++G +  S++ ++ 
Sbjct: 145 GAKFISEMKQLTVLNIIGNDICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMLNIT 204

Query: 159 VLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
            LN+GFN I D  EC   +K LT+L   N++S  IG  G+V ++    L  L ++   + 
Sbjct: 205 KLNIGFNSINDCVECFGKMKQLTDL---NVNSSCIGLCGIVFISSFNQLTHLSIASNSIS 261

Query: 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276
           +    H+S + N+  +++S   I D  ++ ++ ++ L  LN+ +  IT  G+  +  +  
Sbjct: 262 NYEASHISQMKNVIKLDISDNRIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDN 321

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           LT+L +    I   GA  +   K+L  L I    + D G K I ++  LT LN+  N  +
Sbjct: 322 LTYLIIAHNNIGVKGANQISEMKHLAQLSIYNNAVGDEGAKFISEMEQLTFLNIGSN-EI 380

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
            D+ ++ +SG+  L  LN  ++ I+  G  +++ +
Sbjct: 381 GDEGVKALSGMKQLTELNTVDNNISEEGENYIREM 415



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 142/322 (44%), Gaps = 14/322 (4%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           NN I  +G K  +GL  L  L++        G   +  + +L  LNI   N I D   K 
Sbjct: 114 NNNIGPEGAKHISGLEQLTILNIRANEITVDGAKFISEMKQLTVLNI-IGNDICDEGAKF 172

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +SG+  L +L IS + + ++G  Y+  +  +T LN+ G      C++    +  L  LN+
Sbjct: 173 ISGMKQLTNLDISVNNIGENGAKYVSEMLNITKLNI-GFNSINDCVECFGKMKQLTDLNV 231

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           N   +   G    S    L  L++  N I++    H+  + N+  L++    IGD G+ +
Sbjct: 232 NSSCIGLCGIVFISSFNQLTHLSIASNSISNYEASHISQMKNVIKLDISDNRIGDNGVQS 291

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           ++ +  L  L +S   +   G++++  + NL  + ++   I      +++ +  L  L++
Sbjct: 292 ISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGVKGANQISEMKHLAQLSI 351

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
               + D G   ++ +  LT L++    I D G   L   K L  L      +++ G  +
Sbjct: 352 YNNAVGDEGAKFISEMEQLTFLNIGSNEIGDEGVKALSGMKQLTELNTVDNNISEEGENY 411

Query: 319 IKDLSSLTLLNLSQNCNLTDKT 340
           I+++            NLTD T
Sbjct: 412 IREM------------NLTDHT 421



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 135/305 (44%), Gaps = 25/305 (8%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
            +++SGL  LT L+ R N  IT  G K  + +  L  L++        G   + G+ +L 
Sbjct: 122 AKHISGLEQLTILNIRAN-EITVDGAKFISEMKQLTVLNIIGNDICDEGAKFISGMKQLT 180

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS----------------------- 98
           +L+I   N I ++  K +S + N+  L I  + + D                        
Sbjct: 181 NLDIS-VNNIGENGAKYVSEMLNITKLNIGFNSINDCVECFGKMKQLTDLNVNSSCIGLC 239

Query: 99  GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
           GI ++    +LT L++    ++      +S + ++  L+++  ++ D+G +  S++  L 
Sbjct: 240 GIVFISSFNQLTHLSIASNSISNYEASHISQMKNVIKLDISDNRIGDNGVQSISEMNQLT 299

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
            LN+   +IT   + ++  + NL  L +    IG +G   ++ + +L  L + +  VG  
Sbjct: 300 ELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGVKGANQISEMKHLAQLSIYNNAVGDE 359

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
           G + +S +  L  +N+    I D  ++ L+G+  L  LN     I++ G   +  +    
Sbjct: 360 GAKFISEMEQLTFLNIGSNEIGDEGVKALSGMKQLTELNTVDNNISEEGENYIREMNLTD 419

Query: 279 HLDLF 283
           H  ++
Sbjct: 420 HTGIY 424



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 7/144 (4%)

Query: 247 LAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
           L  +  LK LNL+    I  +G   + SL  LT L +         A +L + K+L  L 
Sbjct: 28  LDSMKELKKLNLENNSNIHPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTYLL 87

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
           I G  +   G K+I ++  L  L+++ N N+  +  + ISGL  L  LN+  + IT  G 
Sbjct: 88  ITGNYIGVEGAKYIGEMKQLKQLHIANN-NIGPEGAKHISGLEQLTILNIRANEITVDGA 146

Query: 366 RHLKPLKNLRSLTLESCKVTANDI 389
           + +  +K L  L      +  NDI
Sbjct: 147 KFISEMKQLTVLN-----IIGNDI 165


>gi|290997674|ref|XP_002681406.1| predicted protein [Naegleria gruberi]
 gi|284095030|gb|EFC48662.1| predicted protein [Naegleria gruberi]
          Length = 426

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 166/323 (51%), Gaps = 2/323 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SL+I + N I     K +S +  L SL I  +++ D G  ++  +++LT L++  
Sbjct: 25  MKQLTSLDIIY-NRIGAVGAKLISKMKQLTSLDIGGNQIGDEGAKFISEMKQLTSLSIYN 83

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             + A   + +S +  L  L++   ++ D+G +   ++  L  L++  N I DE +  + 
Sbjct: 84  NLIGAVGFEFISEMKQLTSLDICYNEIGDEGVKSICEMKQLTSLSIYNNRIGDEGVKFIS 143

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            +  L SL++++  IG +G  ++  +  L  L + + Q G+ G + +S +  L S+++S 
Sbjct: 144 EMKQLTSLDINNNRIGVQGAKSICEMKQLTSLSIYNNQTGAVGAKFISEMKQLTSLDISV 203

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I     + ++ +  L SLN+   +I   G+  ++ +  LT LD+ G  I D GA ++ 
Sbjct: 204 NEIGVEGAKFISEMKQLTSLNICYNRIGAEGVKLISEMKQLTSLDIGGNEIGDEGAKFIS 263

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
             K L SL IC   + D G K I ++  LT L  + N  +  +  +LIS +  L SLN+S
Sbjct: 264 EMKQLTSLNICENQIGDEGAKSISEMKQLTSLG-AYNNEIGVEGTKLISEMKQLTSLNIS 322

Query: 357 NSRITSAGLRHLKPLKNLRSLTL 379
            ++I   G + +  +K L SL +
Sbjct: 323 KNQIGDEGAKLISEMKQLASLDI 345



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 185/382 (48%), Gaps = 3/382 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S +  LTSL     N I  +G K  + +  L  L +        G   +  + +L SL+
Sbjct: 46  ISKMKQLTSLDIG-GNQIGDEGAKFISEMKQLTSLSIYNNLIGAVGFEFISEMKQLTSLD 104

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I + N I D  +K +  +  L SL I  +++ D G+ ++  +++LT L++    +     
Sbjct: 105 ICY-NEIGDEGVKSICEMKQLTSLSIYNNRIGDEGVKFISEMKQLTSLDINNNRIGVQGA 163

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            S+  +  L  L++   Q    G +  S++  L  L++  NEI  E    +  +  L SL
Sbjct: 164 KSICEMKQLTSLSIYNNQTGAVGAKFISEMKQLTSLDISVNEIGVEGAKFISEMKQLTSL 223

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           N+    IG EG+  ++ +  L  L++   ++G  G + +S +  L S+N+    I D   
Sbjct: 224 NICYNRIGAEGVKLISEMKQLTSLDIGGNEIGDEGAKFISEMKQLTSLNICENQIGDEGA 283

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + ++ +  L SL     +I   G   ++ +  LT L++   +I D GA  +   K L SL
Sbjct: 284 KSISEMKQLTSLGAYNNEIGVEGTKLISEMKQLTSLNISKNQIGDEGAKLISEMKQLASL 343

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           +I    + D GVK I ++  L  LN+S+N  + D+  +LIS +  L SL++  + I   G
Sbjct: 344 DIYYNEIGDEGVKLISEMKQLKSLNISKN-QIGDEGAKLISEMKQLTSLDIHFNEIGDEG 402

Query: 365 LRHLKPLKNLRSLTLESCKVTA 386
           ++ +  +K L SL++ + K+ +
Sbjct: 403 VKLISEMKQLTSLSIYNQKMKS 424


>gi|168704615|ref|ZP_02736892.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 294

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 132/250 (52%), Gaps = 2/250 (0%)

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
           GS+  L L   +I D  L  L    +L  L+L    + D GL  LT    L  L LS T+
Sbjct: 47  GSVIELWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTK 106

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           V  +GL+ ++ LT+LE + L  T ++D  + +L  L  L  L L   +ITD     +  L
Sbjct: 107 VTDAGLKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKL 166

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
            GLT L L GA+IT  G   +       SL + G  +++AG+K I    SL +L LS+ C
Sbjct: 167 KGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSE-C 225

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
            +TD  L+ ++ L  L +L++  +++T AG++ L  LK L+ L L S +VT   +K +++
Sbjct: 226 KITDGGLKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285

Query: 395 RDLPNLVSFR 404
             LP  + F+
Sbjct: 286 A-LPKCLVFK 294



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 117/227 (51%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I D+D+K L+   +L  L +  ++V+D+G+  L   + LT L L    VT A L  ++ L
Sbjct: 59  IADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAGLKDVAKL 118

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
             L  L L+   ++D G  +   +  L  L L   +ITD    ++  L  L +L LD   
Sbjct: 119 THLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTTLRLDGAK 178

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           I   GL  +  +     L LS T +  +GL+ ++   +L  + LS   I+DG L++LA L
Sbjct: 179 ITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGGLKELAAL 238

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
             L +L+L+  Q+TD G+ +L SL  L  L L   ++TD+G   +RN
Sbjct: 239 DKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 119/234 (50%)

Query: 88  LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 147
           L +  +K+ D+ +  L   + L +L+L    V+ A L  L++   L  L L+R +++D G
Sbjct: 52  LWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAG 111

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
            +  +K+  L+ L L    +TD  +  L  L  L  L L    I D    N+  L  L  
Sbjct: 112 LKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTT 171

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267
           L L   ++   GL+ ++ +    S+ LS T IS+  L+++A   SL+ L L   +ITD G
Sbjct: 172 LRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGG 231

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           L  L +L  LT L L   ++TD+G   L + K L+ L +    +TDAGVK I++
Sbjct: 232 LKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 127/239 (53%), Gaps = 1/239 (0%)

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
           GS+  L L   +++D   ++ +    L VL+L   +++D  L  L     L  L L    
Sbjct: 47  GSVIELWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTK 106

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           + D GL ++  L +L+ L L +T V  +G+  L  L  L  + L  T I+D + + +A L
Sbjct: 107 VTDAGLKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKL 166

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
             L +L LD  +IT  GL  + ++ G   L L G  I+++G   +  FK+LR L++    
Sbjct: 167 KGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECK 226

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
           +TD G+K +  L  LT L+L +   +TD  ++ ++ L  L  L+++++++T AG++ ++
Sbjct: 227 ITDGGLKELAALDKLTTLHL-EKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIR 284



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 1/233 (0%)

Query: 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
           L LEG  +  A L  L+A   L  L+L   Q+SD G ++ +    L  L L   ++TD  
Sbjct: 52  LWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAG 111

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
           L  +  LT+LE L LD   + D G+  L  L  L  L L  T++  +  ++++ L  L +
Sbjct: 112 LKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTT 171

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           + L    I+   L+++A +    SL L    I++ GL  + +   L  L L   +ITD G
Sbjct: 172 LRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGG 231

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
              L     L +L +    +TDAGVK +  L  L +L+L+ +  +TD  ++ I
Sbjct: 232 LKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLT-STQVTDAGVKTI 283



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           I+  G+K  A   +L  L L  C    GGL  L  L KL +L+++    +TD+ +K L+ 
Sbjct: 203 ISEAGLKEIAAFKSLRILQLSECKITDGGLKELAALDKLTTLHLEKTQ-VTDAGVKSLAS 261

Query: 82  LTNLKSLQISCSKVTDSGIAYLK 104
           L  LK L ++ ++VTD+G+  ++
Sbjct: 262 LKKLKVLHLTSTQVTDAGVKTIR 284


>gi|156406568|ref|XP_001641117.1| predicted protein [Nematostella vectensis]
 gi|156228254|gb|EDO49054.1| predicted protein [Nematostella vectensis]
          Length = 803

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 166/345 (48%), Gaps = 60/345 (17%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG----L 106
           L  L+   +L  L+IK C  ITD  ++ +  L  L +LQ+  +K++D G+ Y  G    +
Sbjct: 477 LAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLDNTKISDKGLMYFSGHANCI 536

Query: 107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
           Q L  L+L G  VT     SL+    L  L L   +++    +    +  LK LN+ F  
Sbjct: 537 QTLVHLSLNGTGVTNQGTASLADWKILRILGLENTKIT--SLDVIRHLQHLKTLNVAFTG 594

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSG 225
           +TDECLV L    +L SLN+    + D GL +L GL  L  L+LSD + +  SG+++++G
Sbjct: 595 VTDECLVALNSHPSLSSLNILQTSVTDRGLQHLKGL-PLSSLDLSDYRNITDSGVQYIAG 653

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           +T+L  + LS T ++D  + +L+GL+ L  LN+D R +                      
Sbjct: 654 MTSLTRLLLSNTRLTDEGMVQLSGLAKLVELNVD-RTV---------------------- 690

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDA--------------------------GVKHI 319
            +TD G+  L NF NL+ L +   G+TD                           G+KH+
Sbjct: 691 -VTDKGSRVLSNFANLQILGLSSTGVTDKLLRDGVLNRCKKLCKLNLSRTSVTNRGIKHL 749

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
            +L+SLTLLNL       D  L L++G   L +L +SN    S G
Sbjct: 750 -ELNSLTLLNLDWTRVTADCGL-LLTGCPALKALRMSNCTPPSPG 792



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 152/304 (50%), Gaps = 51/304 (16%)

Query: 85  LKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLNLNRCQ 142
           L+ +++ C   VT+  +A L+  ++L  L+++ CP+ T   L+++  L +L  L L+  +
Sbjct: 461 LRYIKLDCYLLVTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLDNTK 520

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           +SD G   FS                     H   +  L  L+L+  G+ ++G  +L   
Sbjct: 521 ISDKGLMYFSG--------------------HANCIQTLVHLSLNGTGVTNQGTASLADW 560

Query: 203 CNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
             L+ L L +T++ S   +RHL    +L+++N++FTG++D  L  L    SL SLN+   
Sbjct: 561 KILRILGLENTKITSLDVIRHLQ---HLKTLNVAFTGVTDECLVALNSHPSLSSLNILQT 617

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
            +TD GL  L  L  L+ LDL              +++N+          TD+GV++I  
Sbjct: 618 SVTDRGLQHLKGLP-LSSLDL-------------SDYRNI----------TDSGVQYIAG 653

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           ++SLT L LS N  LTD+ +  +SGL  LV LNV  + +T  G R L    NL+ L L S
Sbjct: 654 MTSLTRLLLS-NTRLTDEGMVQLSGLAKLVELNVDRTVVTDKGSRVLSNFANLQILGLSS 712

Query: 382 CKVT 385
             VT
Sbjct: 713 TGVT 716



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 76/173 (43%), Gaps = 29/173 (16%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           ++L GL  L+SL       IT  G++  AG+ +L +L L        G+V L GL KL  
Sbjct: 625 QHLKGLP-LSSLDLSDYRNITDSGVQYIAGMTSLTRLLLSNTRLTDEGMVQLSGLAKLVE 683

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS------------------------ 98
           LN+     +TD   + LS   NL+ L +S + VTD                         
Sbjct: 684 LNVDR-TVVTDKGSRVLSNFANLQILGLSSTGVTDKLLRDGVLNRCKKLCKLNLSRTSVT 742

Query: 99  --GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 149
             GI +L+ L  LTLLNL+   VTA C   L+   +L  L ++ C     G E
Sbjct: 743 NRGIKHLE-LNSLTLLNLDWTRVTADCGLLLTGCPALKALRMSNCTPPSPGDE 794


>gi|186701224|gb|ACC91251.1| leucine-rich repeat family protein [Arabidopsis halleri]
          Length = 600

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 130/447 (29%), Positives = 210/447 (46%), Gaps = 72/447 (16%)

Query: 14  LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCIT 72
           +  R  ++I A+ M    G +NL+ L+L  C RI+   L  + GL  L  L++  C  +T
Sbjct: 66  IDLRGESSINAEWMAYIGGFVNLISLNLSDCQRINSSTLWPITGLTSLTELDLSRCWKVT 125

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           D+ +K L  ++NLK L IS + VT  GI+ L  L+KL+LL+L G PVT   L +L AL  
Sbjct: 126 DAGIKHLQSVSNLKKLWISQTGVTKVGISLLASLKKLSLLDLGGLPVTDHNLIALQALTK 185

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L YL++    +++ G     +  +L  LNL +  +T         + +LE L+++ C I 
Sbjct: 186 LEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQT-----PNIPHLECLHMNMCTIV 240

Query: 193 DEGLVNLTGLCNLKCLELS------DTQ--------------VGSSGLRHLSGLT---NL 229
            E   + + L +LK L LS      +T+              V  + L++ S L    NL
Sbjct: 241 SEPKTH-SSLASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTSLQNFSFLETMINL 299

Query: 230 ESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLA------------------- 269
           E ++LS T   D S+  +A +  +L++LN+   +IT  G+                    
Sbjct: 300 EHLDLSSTAFGDDSVGFVACVGENLRNLNVSETKITSAGVGNLAGHVPQLETFSLSQTFV 359

Query: 270 --------------------ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
                                +TS+ G            +   A L++  +L++L +   
Sbjct: 360 DDLSILLISTMMPCVKALDLGMTSIRGFILQQSPQEEQAEPSLAALQSLTSLKTLSLEHP 419

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
            L D  +  +  L+ LT L+L ++ +LTD TL  +S L  LVSL V ++ +TS GL   +
Sbjct: 420 YLGDTALSALSSLTGLTHLSL-RSTSLTDSTLHHLSSLPNLVSLGVRDAVLTSNGLEKFR 478

Query: 370 PLKNLRSLTLESCK-VTANDIKRLQSR 395
           P K LR+L L+ C  +T +DI  L  R
Sbjct: 479 PPKRLRTLDLKGCWLLTKDDIAGLCKR 505


>gi|290980799|ref|XP_002673119.1| predicted protein [Naegleria gruberi]
 gi|284086700|gb|EFC40375.1| predicted protein [Naegleria gruberi]
          Length = 426

 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 181/397 (45%), Gaps = 35/397 (8%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E L  +  L  L+   N+ I   G K    L  L  L +  C   + G    K L  L+S
Sbjct: 26  EILDSMKELKKLNIEFNSKIDPSGFKYICSLEQLTDLYMTFC---YFGFDIAKHLPSLKS 82

Query: 63  LNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           L       N I     K +  +  LK L I+ + +   G  Y+ GL++LT LN+    +T
Sbjct: 83  LTYLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEIT 142

Query: 121 ---AACLDSLSALGSLFYLNLNRCQ---------------------LSDDGCEKFSKIGS 156
              A  +  +  L  L  +  N C                      + ++G +  S++ +
Sbjct: 143 MDGAKFISEMKQLTGLKIVGNNICDEGAKFISGMKQLTNLDIASNNIGENGAKYVSEMMN 202

Query: 157 LKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
           ++ L++GFN I D  +C   +K LT+L   N++SC IG +G   ++    L  L +++  
Sbjct: 203 IRKLDIGFNSINDGVKCFGEMKQLTDL---NVNSCCIGLDGTKYISSFNQLTHLSIAENL 259

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           +   G  H+S + NL  +++S   I D  ++ ++ ++ L  LN+ +  IT  G+  +  +
Sbjct: 260 ITPYGAIHISQMKNLIKLDISDNRIRDNGVQSISEMNQLTELNVSSIDITPIGIQYICKM 319

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
             LT+L +    I +  A  +   K+L  L I    + D G K I ++  LT L++  N 
Sbjct: 320 DNLTYLIIAHNNIGEKSANQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYN- 378

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
            + D+ ++ +SG+  L  LN  ++ I+  G ++++ +
Sbjct: 379 EIGDEGVKALSGMKQLTRLNAVDNNISDEGEKYIREM 415



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 145/320 (45%), Gaps = 8/320 (2%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           NN I  +G K  +GL  L  L++        G   +  + +L  L I   N I D   K 
Sbjct: 114 NNNIGPEGAKYISGLEQLTFLNIRANEITMDGAKFISEMKQLTGLKI-VGNNICDEGAKF 172

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +SG+  L +L I+ + + ++G  Y+  +  +  L++ G       +     +  L  LN+
Sbjct: 173 ISGMKQLTNLDIASNNIGENGAKYVSEMMNIRKLDI-GFNSINDGVKCFGEMKQLTDLNV 231

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           N C +  DG +  S    L  L++  N IT    +H+  + NL  L++    I D G+ +
Sbjct: 232 NSCCIGLDGTKYISSFNQLTHLSIAENLITPYGAIHISQMKNLIKLDISDNRIRDNGVQS 291

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           ++ +  L  L +S   +   G++++  + NL  + ++   I + S  +++ +  L  L++
Sbjct: 292 ISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGEKSANQISEMKHLAQLSI 351

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
               + D G   ++ +  LT LD+    I D G   L   K L  L      ++D G K+
Sbjct: 352 YHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKALSGMKQLTRLNAVDNNISDEGEKY 411

Query: 319 IKDLSSLTLLNLSQNCNLTD 338
           I++      +NL+ + ++ D
Sbjct: 412 IRE------MNLADHVDIYD 425



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 123/270 (45%), Gaps = 27/270 (10%)

Query: 148 CEKFSKIGSLKVLNLGFN---------------EITD----------ECLVHLKGLTNLE 182
           CE    +  LK LN+ FN               ++TD          +   HL  L +L 
Sbjct: 25  CEILDSMKELKKLNIEFNSKIDPSGFKYICSLEQLTDLYMTFCYFGFDIAKHLPSLKSLT 84

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L +    IG EG   +  +  LK L +++  +G  G +++SGL  L  +N+    I+  
Sbjct: 85  YLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEITMD 144

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
             + ++ +  L  L +    I D G   ++ +  LT+LD+    I ++GA Y+    N+R
Sbjct: 145 GAKFISEMKQLTGLKIVGNNICDEGAKFISGMKQLTNLDIASNNIGENGAKYVSEMMNIR 204

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            L+I    + D GVK   ++  LT LN++  C   D T + IS    L  L+++ + IT 
Sbjct: 205 KLDIGFNSIND-GVKCFGEMKQLTDLNVNSCCIGLDGT-KYISSFNQLTHLSIAENLITP 262

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            G  H+  +KNL  L +   ++  N ++ +
Sbjct: 263 YGAIHISQMKNLIKLDISDNRIRDNGVQSI 292



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 128/279 (45%), Gaps = 3/279 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S +  LT L    NN I  +G K  +G+  L  LD+        G   +  +M +  L+
Sbjct: 149 ISEMKQLTGLKIVGNN-ICDEGAKFISGMKQLTNLDIASNNIGENGAKYVSEMMNIRKLD 207

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I + N I D  +K    +  L  L ++   +   G  Y+    +LT L++    +T    
Sbjct: 208 IGF-NSINDG-VKCFGEMKQLTDLNVNSCCIGLDGTKYISSFNQLTHLSIAENLITPYGA 265

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             +S + +L  L+++  ++ D+G +  S++  L  LN+   +IT   + ++  + NL  L
Sbjct: 266 IHISQMKNLIKLDISDNRIRDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYL 325

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
            +    IG++    ++ + +L  L +    VG  G + +S +  L  +++ +  I D  +
Sbjct: 326 IIAHNNIGEKSANQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEGV 385

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
           + L+G+  L  LN     I+D G   +  +    H+D++
Sbjct: 386 KALSGMKQLTRLNAVDNNISDEGEKYIREMNLADHVDIY 424



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 5/193 (2%)

Query: 191 IGDEGLVN---LTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
           I +EG  N   L  +  LK L +  ++++  SG +++  L  L  + ++F        + 
Sbjct: 17  IENEGGFNCEILDSMKELKKLNIEFNSKIDPSGFKYICSLEQLTDLYMTFCYFGFDIAKH 76

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           L  L SL  L +    I   G   +  +  L  L +    I   GA Y+   + L  L I
Sbjct: 77  LPSLKSLTYLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNI 136

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
               +T  G K I ++  LT L +  N N+ D+  + ISG+  L +L+++++ I   G +
Sbjct: 137 RANEITMDGAKFISEMKQLTGLKIVGN-NICDEGAKFISGMKQLTNLDIASNNIGENGAK 195

Query: 367 HLKPLKNLRSLTL 379
           ++  + N+R L +
Sbjct: 196 YVSEMMNIRKLDI 208


>gi|417301579|ref|ZP_12088730.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
           WH47]
 gi|327542171|gb|EGF28664.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
           WH47]
          Length = 442

 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 127/262 (48%), Gaps = 27/262 (10%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E L+GLS L ++  R  N I   GM + A +  L+ + LE+      GLV L  L  L+S
Sbjct: 161 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVQLEKSKVTDEGLVKLAPL-PLKS 218

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           +N  +C  I    MK L     L+ LQ   SK+ D+ +A LKGL KL  L + GC VT  
Sbjct: 219 INFNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGE 278

Query: 123 CL---------------DS---------LSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 157
            +               DS         +S L ++ Y++++ C+L S +G  +  K+  L
Sbjct: 279 GIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGKLTGL 338

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
             L L   +  DE L     L NLE LNL S  + DE L  L  +  LK L ++ TQ+G 
Sbjct: 339 TYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGD 398

Query: 218 SGLRHLSGLTNLESINLSFTGI 239
                L+ L NL+S+N++ T I
Sbjct: 399 DSFLELAKLPNLKSMNVANTSI 420



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 164/353 (46%), Gaps = 5/353 (1%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 69
           N+   S         + ++  +G+ N  K           G+ NL  L KL+ L +    
Sbjct: 71  NVVEFSIANQKGGIEESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLA-DT 129

Query: 70  CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
            ITD  +K    L +++ L +  + VTD G+  L GL KL  ++L    +  A +DSL+ 
Sbjct: 130 AITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAK 189

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 188
           + +L  + L + +++D+G  K + +  LK +N  +   I    +  L     LE L  D 
Sbjct: 190 IKTLIDVQLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLEYLQGDY 248

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             I D  +  L GL  LK L +    V   G++H++G   L    L  + + D  L+ ++
Sbjct: 249 SKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVIS 308

Query: 249 GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
            L ++  +++ + R  +  G+A L  LTGLT+L L+  +  D   A   +  NL  L + 
Sbjct: 309 QLPAVTYVDISECRLASPEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLK 368

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
              +TD  +  +  ++ L  LN++    L D +   ++ L  L S+NV+N+ I
Sbjct: 369 STAVTDESLPVLMKMTKLKTLNVA-GTQLGDDSFLELAKLPNLKSMNVANTSI 420



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 139/317 (43%), Gaps = 41/317 (12%)

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 154
           V +  IA  KG  + +L +L G P T                  N   + D G E  + +
Sbjct: 72  VVEFSIANQKGGIEESLQHLSGIPNTTKA-------------TFNGPGIDDAGMENLTSL 118

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
             LK L L    ITDE L     L +++ L L   G+ DEGL  LTGL  L+ ++L +T 
Sbjct: 119 PKLKYLTLADTAITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTN 178

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL---------------- 258
           +G +G+  L+ +  L  + L  + ++D  L KLA L  LKS+N                 
Sbjct: 179 IGDAGMDSLAKIKTLIDVQLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQ 237

Query: 259 ---------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
                    D  +I D  +A L  L+ L  L + G  +T  G  ++   K L   E+   
Sbjct: 238 TPTLEYLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDS 297

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNL-TDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
            + D G+K I  L ++T +++S+ C L + + +  +  LTGL  L +  ++     L   
Sbjct: 298 SVDDDGLKVISQLPAVTYVDISE-CRLASPEGIAQLGKLTGLTYLGLWETKTNDETLAGF 356

Query: 369 KPLKNLRSLTLESCKVT 385
             L NL  L L+S  VT
Sbjct: 357 GDLVNLEELNLKSTAVT 373



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 147/330 (44%), Gaps = 6/330 (1%)

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           ++ LSG+ N      +   + D+G+  L  L KL  L L    +T   L +   L S+  
Sbjct: 88  LQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDSVQG 147

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L L R  ++D+G E  + +  L+ ++L    I D  +  L  +  L  + L+   + DEG
Sbjct: 148 LFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVQLEKSKVTDEG 207

Query: 196 LVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           LV L  L  LK +  +  T +    ++ L     LE +   ++ I+D S+ +L GLS LK
Sbjct: 208 LVKLAPLP-LKSINFNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLSKLK 266

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL-TD 313
            L +    +T  G+  +     L   +L  + + D G   +     +  ++I    L + 
Sbjct: 267 RLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASP 326

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 373
            G+  +  L+ LT L L +     D+TL     L  L  LN+ ++ +T   L  L  +  
Sbjct: 327 EGIAQLGKLTGLTYLGLWE-TKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTK 385

Query: 374 LRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
           L++L +   ++   D   L+   LPNL S 
Sbjct: 386 LKTLNVAGTQL--GDDSFLELAKLPNLKSM 413



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 25/244 (10%)

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           +E L HL G+ N      +  GI D G+ NLT L  LK L L+DT +    L+    L +
Sbjct: 85  EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 144

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           ++ + L  TG++D  L  L GLS L++++L    I D G+ +L  +  L  + L  +++T
Sbjct: 145 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVQLEKSKVT 204

Query: 289 DSGAAYLR-------NFK--------------NLRSLEICGGG---LTDAGVKHIKDLSS 324
           D G   L        NF                  +LE   G    + DA +  +K LS 
Sbjct: 205 DEGLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLSK 264

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           L  L + + C++T + ++ I+G   L    + +S +   GL+ +  L  +  + +  C++
Sbjct: 265 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRL 323

Query: 385 TAND 388
            + +
Sbjct: 324 ASPE 327


>gi|255537779|ref|XP_002509956.1| protein binding protein, putative [Ricinus communis]
 gi|223549855|gb|EEF51343.1| protein binding protein, putative [Ricinus communis]
          Length = 597

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 188/387 (48%), Gaps = 33/387 (8%)

Query: 17  RRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSD 75
           R  NA+ A+ M        L  L+L  C +I    L +L G+  L+ L++     +TD+ 
Sbjct: 71  RGENAVDAEWMAYLGAFRYLRYLNLADCNKITSSALWSLTGMTSLKELDLSRSVKVTDAG 130

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           ++ L  +++L+ L+I  + +T  G+A L  L  L++L+L G PVT   L SL  L  L Y
Sbjct: 131 IRHLLSISSLEILRIPETGLTAKGVALLTSLTNLSVLDLGGLPVTDMALSSLQVLTKLEY 190

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L+L    +S++G         L  LNLG+  +T      L  + +LE LNL +C I  E 
Sbjct: 191 LDLWGSNISNNGVAVLQLFPKLSFLNLGWTSVT-----RLPSMLSLEYLNLSNCTI--ES 243

Query: 196 LVNLTGLCNLKCLELSDTQV---GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           L+   G  +   L    T+V   G++         N+E   LSF  +S+ SL+    L  
Sbjct: 244 LLEGDGDGDKAPL----TKVILSGATFPNEAEAFYNIEPRFLSFLDVSNSSLQGFYFLHD 299

Query: 253 LK---SLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYL-RNFKNLRSLEIC 307
           +K    L+L +  + D  + A+  +   LT+L+L   R+T +G A L  +   L  L + 
Sbjct: 300 MKMLEHLDLSSTMMGDDAIEAVACIGANLTNLNLSKTRVTSAGLAILAEHVPKLEYLSLS 359

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD------------KTLELISGLTGLVSLNV 355
              + D  + +I  +SSL +++LS N N+               +L+ + GL+GL SLN+
Sbjct: 360 HALVDDFALSYIGMMSSLKVVDLS-NTNIKGFIRQMGVETNLIPSLKALQGLSGLQSLNL 418

Query: 356 SNSRITSAGLRHLKPLKNLRSLTLESC 382
            ++++  A +  +   + L  L+L+S 
Sbjct: 419 EHTQVRDAAVAPVSSFQELSHLSLKSA 445



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 169/408 (41%), Gaps = 91/408 (22%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN--------- 69
           N IT+  + +  G+ +L +LDL R  ++   G+ +L  +  LE L I             
Sbjct: 99  NKITSSALWSLTGMTSLKELDLSRSVKVTDAGIRHLLSISSLEILRIPETGLTAKGVALL 158

Query: 70  --------------CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 115
                          +TD  +  L  LT L+ L +  S ++++G+A L+   KL+ LNL 
Sbjct: 159 TSLTNLSVLDLGGLPVTDMALSSLQVLTKLEYLDLWGSNISNNGVAVLQLFPKLSFLNLG 218

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQ----LSDDG--------------------CEKF 151
              VT      L ++ SL YLNL+ C     L  DG                     E F
Sbjct: 219 WTSVT-----RLPSMLSLEYLNLSNCTIESLLEGDGDGDKAPLTKVILSGATFPNEAEAF 273

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLEL 210
             I    +  L  +  + +    L  +  LE L+L S  +GD+ +  +  +  NL  L L
Sbjct: 274 YNIEPRFLSFLDVSNSSLQGFYFLHDMKMLEHLDLSSTMMGDDAIEAVACIGANLTNLNL 333

Query: 211 SDTQVGSSGLRHLS-GLTNLESINLSFTGISD---------------------------- 241
           S T+V S+GL  L+  +  LE ++LS   + D                            
Sbjct: 334 SKTRVTSAGLAILAEHVPKLEYLSLSHALVDDFALSYIGMMSSLKVVDLSNTNIKGFIRQ 393

Query: 242 --------GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
                    SL+ L GLS L+SLNL+  Q+ D  +A ++S   L+HL L  A + D    
Sbjct: 394 MGVETNLIPSLKALQGLSGLQSLNLEHTQVRDAAVAPVSSFQELSHLSLKSASLADETLY 453

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
           +L +   L SL I    LT+ G+   +   +L +L+L     LT++ +
Sbjct: 454 HLSSLSKLTSLVIGDAVLTNCGLDLFRPPVALKMLDLRGCWLLTEEAI 501


>gi|290974856|ref|XP_002670160.1| predicted protein [Naegleria gruberi]
 gi|284083716|gb|EFC37416.1| predicted protein [Naegleria gruberi]
          Length = 376

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 172/341 (50%), Gaps = 6/341 (1%)

Query: 33  LINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 91
           L N+  L LER  R       + GLMK L  L+ +  NCI    +K +  + NL  L I 
Sbjct: 35  LENIENLRLERNNRFFD--CQIIGLMKGLTVLSAE--NCIGTEGVKHICKMNNLTKLNIE 90

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 151
            +++ + G  Y+  +++LT LN+    +    ++ +S L +L  L +  C++ D+G +  
Sbjct: 91  RNEIGEEGAKYISKMKQLTELNVGWNGIGKEGVEFISELKNLTLLEIEACRICDEGAKSI 150

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
           S++  L  LN+ +N I++    +L  L  L  L L  C I +EG   ++ L  L  L++S
Sbjct: 151 SELKQLTHLNISYNNISNLGSKYLTELKQLTVLTLCDCNISEEGCKYISELNQLTDLDIS 210

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
           +  +G +G+ ++SG+  L  + +  T +    L+K++ +  + +LN+    + D G   +
Sbjct: 211 NNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKISEMKQVTNLNISWNYVGDEGAKYI 270

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
           + +  LT L++  + I+  GA ++   K L  L I    +   G   I  ++ L +L++S
Sbjct: 271 SDMKQLTKLEVVRSDISTEGAKHISELKQLTDLNIGENNIGGEGAIAISKMNQLRILDIS 330

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 372
            N N+     E +S +  L  L++S++ I + G + +  +K
Sbjct: 331 DN-NIGGIGAEHVSQMKQLTHLDISHNCIGNYGAKRINTMK 370



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 151/327 (46%), Gaps = 27/327 (8%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           +  LT LS    N I  +G+K    + NL KL++ER      G   +  + +L  LN+ W
Sbjct: 58  MKGLTVLSAE--NCIGTEGVKHICKMNNLTKLNIERNEIGEEGAKYISKMKQLTELNVGW 115

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N I    ++ +S L NL  L+I   ++ D G   +  L++LT LN+    ++      L
Sbjct: 116 -NGIGKEGVEFISELKNLTLLEIEACRICDEGAKSISELKQLTHLNISYNNISNLGSKYL 174

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           + L  L  L L  C +S++GC+  S++          N++TD              L++ 
Sbjct: 175 TELKQLTVLTLCDCNISEEGCKYISEL----------NQLTD--------------LDIS 210

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
           +  IG  G+  ++G+  L  L +  T +  + L+ +S +  + ++N+S+  + D   + +
Sbjct: 211 NNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKISEMKQVTNLNISWNYVGDEGAKYI 270

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           + +  L  L +    I+  G   ++ L  LT L++    I   GA  +     LR L+I 
Sbjct: 271 SDMKQLTKLEVVRSDISTEGAKHISELKQLTDLNIGENNIGGEGAIAISKMNQLRILDIS 330

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNC 334
              +   G +H+  +  LT L++S NC
Sbjct: 331 DNNIGGIGAEHVSQMKQLTHLDISHNC 357



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 98/187 (52%), Gaps = 2/187 (1%)

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           +G+ G++H+  + NL  +N+    I +   + ++ +  L  LN+    I   G+  ++ L
Sbjct: 70  IGTEGVKHICKMNNLTKLNIERNEIGEEGAKYISKMKQLTELNVGWNGIGKEGVEFISEL 129

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
             LT L++   RI D GA  +   K L  L I    +++ G K++ +L  LT+L L  +C
Sbjct: 130 KNLTLLEIEACRICDEGAKSISELKQLTHLNISYNNISNLGSKYLTELKQLTVLTLC-DC 188

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-Q 393
           N++++  + IS L  L  L++SN+ I   G+ ++  +K L  L +    +   +++++ +
Sbjct: 189 NISEEGCKYISELNQLTDLDISNNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKISE 248

Query: 394 SRDLPNL 400
            + + NL
Sbjct: 249 MKQVTNL 255


>gi|290977929|ref|XP_002671689.1| LRR_RI domain-containing protein [Naegleria gruberi]
 gi|284085260|gb|EFC38945.1| LRR_RI domain-containing protein [Naegleria gruberi]
          Length = 434

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 149/304 (49%), Gaps = 26/304 (8%)

Query: 82  LTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
             NLK L+I    +  D G   +  ++ LT LN+  C +T+   + +  L  L YLN+  
Sbjct: 117 FPNLKRLEIGDNQQFGDCGAESISKIKTLTSLNVLDCGITSKGAEFIGLLNGLTYLNIGN 176

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
            ++ D G +   K+ SL VL +G  EIT E    +  +  L SL++ S  +  E   +++
Sbjct: 177 NKIMDSGMKFIGKLSSLNVLQIGSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAKSIS 236

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
            +  LK L +S+T +   GL++LS LT                         L +L+L  
Sbjct: 237 SIHGLKSLNISNTGISVEGLKYLSALT------------------------LLTNLSLAK 272

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
             IT+ GL +++ +  +T L L    I   GA  L    NLR L I    +T  G+KHI 
Sbjct: 273 NNITNEGLLSISQMKQITKLFLQHNVIDCDGAQLLSTMTNLRLLNISQTKITTEGIKHIT 332

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
            L ++T LN+S N  L D+ L+L+S +  L +L+  N+++TS G +H+  L NL  L + 
Sbjct: 333 SLKNITSLNISIN-QLNDEALKLVSSMNQLTNLSTHNNKLTSEGAKHISQLNNLTELNIS 391

Query: 381 SCKV 384
           S  V
Sbjct: 392 SNPV 395



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 142/285 (49%), Gaps = 2/285 (0%)

Query: 50  GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 109
           G  ++  +  L SLN+  C  IT    + +  L  L  L I  +K+ DSG+ ++  L  L
Sbjct: 135 GAESISKIKTLTSLNVLDCG-ITSKGAEFIGLLNGLTYLNIGNNKIMDSGMKFIGKLSSL 193

Query: 110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            +L +    +T+     +  +  L  L++    ++ +  +  S I  LK LN+    I+ 
Sbjct: 194 NVLQIGSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAKSISSIHGLKSLNISNTGISV 253

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
           E L +L  LT L +L+L    I +EGL++++ +  +  L L    +   G + LS +TNL
Sbjct: 254 EGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITKLFLQHNVIDCDGAQLLSTMTNL 313

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             +N+S T I+   ++ +  L ++ SLN+   Q+ D  L  ++S+  LT+L     ++T 
Sbjct: 314 RLLNISQTKITTEGIKHITSLKNITSLNISINQLNDEALKLVSSMNQLTNLSTHNNKLTS 373

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
            GA ++    NL  L I    +   G  ++  +++L ++N+S NC
Sbjct: 374 EGAKHISQLNNLTELNISSNPVRIEGANYLNQMTTLKIINVS-NC 417



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 130/259 (50%), Gaps = 13/259 (5%)

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVH-LKGLTNL 181
           +DS   +GS F  ++N         E  SK   +LK L +G N+   +C    +  +  L
Sbjct: 94  VDSFRVVGSYFIDSIN--------AEIISKSFPNLKRLEIGDNQQFGDCGAESISKIKTL 145

Query: 182 ESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
            SLN+  CGI  +G     GL N L  L + + ++  SG++ +  L++L  + +  T I+
Sbjct: 146 TSLNVLDCGITSKG-AEFIGLLNGLTYLNIGNNKIMDSGMKFIGKLSSLNVLQIGSTEIT 204

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
             S + +  +  L SL++ +  +T     +++S+ GL  L++    I+  G  YL     
Sbjct: 205 SESFKLVGCMKGLTSLSIYSNPVTIEDAKSISSIHGLKSLNISNTGISVEGLKYLSALTL 264

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L +L +    +T+ G+  I  +  +T L L  N    D   +L+S +T L  LN+S ++I
Sbjct: 265 LTNLSLAKNNITNEGLLSISQMKQITKLFLQHNVIDCDGA-QLLSTMTNLRLLNISQTKI 323

Query: 361 TSAGLRHLKPLKNLRSLTL 379
           T+ G++H+  LKN+ SL +
Sbjct: 324 TTEGIKHITSLKNITSLNI 342



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 122/269 (45%), Gaps = 50/269 (18%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I DS MK +  L++L  LQI  +++T      +  ++ LT L++   PVT     S+S
Sbjct: 177 NKIMDSGMKFIGKLSSLNVLQIGSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAKSIS 236

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-------------- 174
           ++  L  LN++   +S +G +  S +  L  L+L  N IT+E L+               
Sbjct: 237 SIHGLKSLNISNTGISVEGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITKLFLQH 296

Query: 175 ----------LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
                     L  +TNL  LN                        +S T++ + G++H++
Sbjct: 297 NVIDCDGAQLLSTMTNLRLLN------------------------ISQTKITTEGIKHIT 332

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
            L N+ S+N+S   ++D +L+ ++ ++ L +L+    ++T  G   ++ L  LT L++  
Sbjct: 333 SLKNITSLNISINQLNDEALKLVSSMNQLTNLSTHNNKLTSEGAKHISQLNNLTELNISS 392

Query: 285 ARITDSGAAYLRNFKNLRSLEI--CGGGL 311
             +   GA YL     L+ + +  C  G+
Sbjct: 393 NPVRIEGANYLNQMTTLKIINVSNCRTGI 421



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 101/190 (53%), Gaps = 2/190 (1%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +++S +  L SL+   N  I+ +G+K  + L  L  L L +    + GL+++  + ++  
Sbjct: 233 KSISSIHGLKSLNIS-NTGISVEGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITK 291

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L ++  N I     + LS +TNL+ L IS +K+T  GI ++  L+ +T LN+    +   
Sbjct: 292 LFLQ-HNVIDCDGAQLLSTMTNLRLLNISQTKITTEGIKHITSLKNITSLNISINQLNDE 350

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L  +S++  L  L+ +  +L+ +G +  S++ +L  LN+  N +  E   +L  +T L+
Sbjct: 351 ALKLVSSMNQLTNLSTHNNKLTSEGAKHISQLNNLTELNISSNPVRIEGANYLNQMTTLK 410

Query: 183 SLNLDSCGIG 192
            +N+ +C  G
Sbjct: 411 IINVSNCRTG 420



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 276 GLTHLDLFGARITDSGAAYL--RNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQ 332
           G+    + G+   DS  A +  ++F NL+ LEI       D G + I  + +LT LN+  
Sbjct: 93  GVDSFRVVGSYFIDSINAEIISKSFPNLKRLEIGDNQQFGDCGAESISKIKTLTSLNV-L 151

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
           +C +T K  E I  L GL  LN+ N++I  +G++ +  L +L  L + S ++T+   K
Sbjct: 152 DCGITSKGAEFIGLLNGLTYLNIGNNKIMDSGMKFIGKLSSLNVLQIGSTEITSESFK 209


>gi|290972120|ref|XP_002668808.1| predicted protein [Naegleria gruberi]
 gi|284082332|gb|EFC36064.1| predicted protein [Naegleria gruberi]
          Length = 329

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 154/312 (49%), Gaps = 1/312 (0%)

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N I     K +S +  L SL I  +++   G  Y+  ++ LT L++    +       +
Sbjct: 11  SNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSNEIGVEGSKYI 70

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           S +  L  LN+   Q+  +G +  S++  L  L++  NEI  E   ++  +  L SLN+ 
Sbjct: 71  SEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISEMKQLTSLNIG 130

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
              I  EG   ++G+ +L  L +   Q+G  G +++S +  L S+N+    I +   + +
Sbjct: 131 YNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYI 190

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           +G+ SL SLN+   QI   G   ++ +  LT L++    I+  G+ Y+   K+L SL I 
Sbjct: 191 SGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIG 250

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
              +   G K+I ++  LT LN+  N  +  +  + ISG+  L SLN+  ++I   G ++
Sbjct: 251 YNQIGVEGSKYISEMKQLTSLNIGYN-EIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKY 309

Query: 368 LKPLKNLRSLTL 379
           +  +K L SL +
Sbjct: 310 ISEMKQLTSLNI 321



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 158/326 (48%), Gaps = 2/326 (0%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           ++ LTSL    +N I  +G K  + +  L  LD+        G   +  +  L SL+I  
Sbjct: 1   MNQLTSLDMH-SNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIH- 58

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N I     K +S +  L SL I  +++   G  Y+  + +LT L++    +       +
Sbjct: 59  SNEIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYI 118

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           S +  L  LN+   Q+S +G +  S + SL  L +G+N+I  E   ++  +  L SLN+ 
Sbjct: 119 SEMKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIG 178

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
              IG+EG   ++G+ +L  L +   Q+G  G +++S +  L S+N+    IS    + +
Sbjct: 179 HNEIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYI 238

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           +G+ SL SLN+   QI   G   ++ +  LT L++    I   GA Y+   K+L SL I 
Sbjct: 239 SGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTSLNIG 298

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQN 333
              +   G K+I ++  LT LN+  N
Sbjct: 299 YNQIGVEGSKYISEMKQLTSLNIGHN 324



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 140/274 (51%), Gaps = 1/274 (0%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           + +LT L++    +       +S +  L  L++   ++  +G +  S++ SL  L++  N
Sbjct: 1   MNQLTSLDMHSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSN 60

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           EI  E   ++  +  L SLN+    IG EG   ++ +  L  L++   ++G  G +++S 
Sbjct: 61  EIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISE 120

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           +  L S+N+ +  IS    + ++G+ SL SL +   QI   G   ++ +  LT L++   
Sbjct: 121 MKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHN 180

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
            I + GA Y+   K+L SL I    +   G K+I ++  LT LN+  N  ++ +  + IS
Sbjct: 181 EIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHN-EISVEGSKYIS 239

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           G+  L SLN+  ++I   G +++  +K L SL +
Sbjct: 240 GMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNI 273



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 136/267 (50%), Gaps = 14/267 (5%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LM 58
           +S +  LTSL+   N  I  +G K  + +  L  LD      IH   + ++G      + 
Sbjct: 70  ISEMKQLTSLNIGYN-QIGVEGSKYISEMNQLTSLD------IHSNEIGVEGSKYISEMK 122

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           +L SLNI + N I+    K +SG+ +L SL I  +++   G  Y+  +++LT LN+    
Sbjct: 123 QLTSLNIGY-NQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHNE 181

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +       +S + SL  LN+   Q+  +G +  S++  L  LN+G NEI+ E   ++ G+
Sbjct: 182 IGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYISGM 241

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            +L SLN+    IG EG   ++ +  L  L +   ++G  G +++SG+ +L S+N+ +  
Sbjct: 242 KSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTSLNIGYNQ 301

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITD 265
           I     + ++ +  L SLN+   +I +
Sbjct: 302 IGVEGSKYISEMKQLTSLNIGHNEIGE 328



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 123/233 (52%), Gaps = 1/233 (0%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L++  NEI  E   ++  +  L SL++ S  IG EG   ++ + +L  L++   ++G  G
Sbjct: 7   LDMHSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSNEIGVEG 66

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
            +++S +  L S+N+ +  I     + ++ ++ L SL++ + +I   G   ++ +  LT 
Sbjct: 67  SKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISEMKQLTS 126

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L++   +I+  GA Y+   K+L SL I    +   G K+I ++  LT LN+  N  + ++
Sbjct: 127 LNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHN-EIGEE 185

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
             + ISG+  L SLN+  ++I   G +++  +K L SL +   +++    K +
Sbjct: 186 GAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYI 238



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 2/190 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +SG+ +LTSL +   N I  +G K  + +  L  L++        G   + G+  L SLN
Sbjct: 142 ISGMKSLTSL-YIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTSLN 200

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I + N I     K +S +  L SL I  ++++  G  Y+ G++ LT LN+    +     
Sbjct: 201 IGY-NQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEGS 259

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             +S +  L  LN+   ++  +G +  S + SL  LN+G+N+I  E   ++  +  L SL
Sbjct: 260 KYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSL 319

Query: 185 NLDSCGIGDE 194
           N+    IG+E
Sbjct: 320 NIGHNEIGEE 329


>gi|320164611|gb|EFW41510.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 853

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 171/384 (44%), Gaps = 31/384 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLES 62
            +GL+ LT LS   N  IT+  + AFAGL  L +LDL     T I         L  L  
Sbjct: 78  FTGLTALTVLSLSYNQ-ITSIPVSAFAGLDALTRLDLSSNLITSISASA--FPSLTALTE 134

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN++  N IT       +GLT L+ L +S +++T        GL  +TL+          
Sbjct: 135 LNLQG-NLITSIPASLFTGLTALRWLPLSNNQITSIAANAFNGLSAVTLI---------- 183

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
                       YL  N  Q++D     F+ + +L  L L  N+IT        GLT+LE
Sbjct: 184 ------------YLQTN--QITDLSPATFTGLAALTELYLMGNQITSIHASTFAGLTSLE 229

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           +L+L    I +      T L  L  L L D Q+        +GLT LE +NL    I++ 
Sbjct: 230 NLDLQDNKITEVPASAFTDLSALTGLTLQDNQITEIPASAFAGLTVLEILNLQGNQITNI 289

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
                A L++L++LNL   QIT    +A   LT L  LDL    IT   A+       L 
Sbjct: 290 PETVFADLTALETLNLQDNQITSIPASAFADLTALRSLDLQDNNITSIPASVFTGLSALN 349

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            L++    +TD        L++L +L L  N  +T+ +    +GLT L  L++S+ +ITS
Sbjct: 350 ELKLHTNKITDLSASVFASLTALAVLELQSN-QITEISANAFTGLTALTKLDLSSCQITS 408

Query: 363 AGLRHLKPLKNLRSLTLESCKVTA 386
             +     L  LR L L   ++T+
Sbjct: 409 FSVDAFTSLTALRDLYLHFNQITS 432



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 154/369 (41%), Gaps = 17/369 (4%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHG-GLVNLKGLMKLE 61
            +GL+ LT L +   N IT+     FAGL +L  LDL+  + T +      +L  L  L 
Sbjct: 198 FTGLAALTEL-YLMGNQITSIHASTFAGLTSLENLDLQDNKITEVPASAFTDLSALTGLT 256

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
             +    N IT+      +GLT L+ L +  +++T+        L  L  LNL+   +T+
Sbjct: 257 LQD----NQITEIPASAFAGLTVLEILNLQGNQITNIPETVFADLTALETLNLQDNQITS 312

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
               + + L +L  L+L    ++      F+ + +L  L L  N+ITD        LT L
Sbjct: 313 IPASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSASVFASLTAL 372

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L S  I +      TGL  L  L+LS  Q+ S  +   + LT L  + L F  I+ 
Sbjct: 373 AVLELQSNQITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDLYLHFNQITS 432

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
                  GL++L  L L   QIT       T LT L  L L    IT   A    +  +L
Sbjct: 433 IPASAFTGLTALYVLILAYNQITSLPTNTFTGLTALNTLTLSFNPITSISANTFTDLTSL 492

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
             L +    +T         L  L  L LS N   T     L  GL   +SL++S     
Sbjct: 493 FFLILNNNQITSISANAFAGLPGLKYLVLSDN-PFTTLPPGLFQGLPNGLSLSLSG---- 547

Query: 362 SAGLRHLKP 370
               ++L+P
Sbjct: 548 ----QYLRP 552


>gi|320165727|gb|EFW42626.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 553

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 178/382 (46%), Gaps = 3/382 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            +GL+ LT+L F  NN + +    A AGL  L  L L+R            GL  L  LN
Sbjct: 74  FTGLTALTTL-FLENNQLPSISANALAGLTALQYLSLQRNQLTSISANTFTGLTALTGLN 132

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           + + N         L+GLT +++L +  + +T         L  LT+L+L    + +   
Sbjct: 133 LDF-NQFASISADTLAGLTTMRTLSLGSNGITSISANAFTSLTALTVLDLSYNELPSISA 191

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           D+L+ L ++  L+L R QL+      F+ + +L  L+L +NE+       L GLT L+ L
Sbjct: 192 DALTGLTAMRTLSLQRNQLTSISANTFTGLTALTGLDLSYNELPSISANALTGLTALQYL 251

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           +L++  I        TGL  L  L L+  Q+ +     L+GLT L S++L+   I+    
Sbjct: 252 SLNNNRITRISANTFTGLTALTTLYLNYNQLPNISANALTGLTALRSLSLTQNNITTIHA 311

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
              AGL++L SL L   Q++     ALT LT L +L L   RIT   A        L  L
Sbjct: 312 NAFAGLTALASLVLVQNQLSSISADALTGLTALQYLSLNNNRITRISANAFTGLTALTVL 371

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
            +    L       +  L++L  L+L+ N  +T       +GLT L  L + N++ITS  
Sbjct: 372 YLSYNELPSISANALAGLTALQYLSLNNN-QITSIAAAAFAGLTALTHLPLDNNQITSIS 430

Query: 365 LRHLKPLKNLRSLTLESCKVTA 386
                 L  L+ L+L S ++T+
Sbjct: 431 AEAFTGLSALQLLSLNSNQITS 452



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 165/360 (45%), Gaps = 3/360 (0%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L+GL+ + +LS   N  IT+    AF  L  L  LDL            L GL  + +
Sbjct: 144 DTLAGLTTMRTLSLGSN-GITSISANAFTSLTALTVLDLSYNELPSISADALTGLTAMRT 202

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L+++  N +T       +GLT L  L +S +++       L GL  L  L+L    +T  
Sbjct: 203 LSLQR-NQLTSISANTFTGLTALTGLDLSYNELPSISANALTGLTALQYLSLNNNRITRI 261

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             ++ + L +L  L LN  QL +      + + +L+ L+L  N IT        GLT L 
Sbjct: 262 SANTFTGLTALTTLYLNYNQLPNISANALTGLTALRSLSLTQNNITTIHANAFAGLTALA 321

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SL L    +       LTGL  L+ L L++ ++        +GLT L  + LS+  +   
Sbjct: 322 SLVLVQNQLSSISADALTGLTALQYLSLNNNRITRISANAFTGLTALTVLYLSYNELPSI 381

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           S   LAGL++L+ L+L+  QIT    AA   LT LTHL L   +IT   A        L+
Sbjct: 382 SANALAGLTALQYLSLNNNQITSIAAAAFAGLTALTHLPLDNNQITSISAEAFTGLSALQ 441

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            L +    +T         L++LT L L+QN N+   +    +GLT L  L + ++  T+
Sbjct: 442 LLSLNSNQITSIAANAFTGLNALTSLYLNQN-NIAGISANAFTGLTKLTQLYLDDNPFTT 500


>gi|434405931|ref|YP_007148816.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
           stagnale PCC 7417]
 gi|428260186|gb|AFZ26136.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
           stagnale PCC 7417]
          Length = 451

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 192/359 (53%), Gaps = 63/359 (17%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           SD+KPLS LTNL +L +S ++++D  I  L  L  LT ++L    ++   +  LS L +L
Sbjct: 84  SDIKPLSNLTNLTTLDLSENQISD--IKPLSNLTNLTDIDLSSNQISDIKV--LSNLTNL 139

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             ++L++ Q+SD   +  S + +L VL+L  N+I+D  +  L  LTNL S+ L    I D
Sbjct: 140 TDIDLSKNQISD--IKVLSNLTNLTVLDLSDNQISD--IKVLSNLTNLTSVKLSENQISD 195

Query: 194 -EGLVNLT-------------------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            E L NLT                    L NL  L L + Q+G   ++ LS LTNL S++
Sbjct: 196 IEVLSNLTNLTVLDLGYNQISDIKVLSNLTNLTYLSLWNNQIG--DIKVLSNLTNLTSLS 253

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L    ISD  ++ L+ L++L SL L   QI+D  +  L++LT LT+L L+  +I D    
Sbjct: 254 LWDNQISD--IKPLSNLTNLTSLYLWDNQISD--IKPLSNLTNLTYLYLWDNQIADIKP- 308

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN--------CNLTDKT----- 340
            L N  NL  L++    + D  +K + +L+SLT L+LS+N         NLT+ T     
Sbjct: 309 -LSNLTNLTDLDLSKNQIGD--IKPLSNLTSLTSLDLSKNQIADIKPLSNLTNLTSLSLW 365

Query: 341 ------LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT-LESCKVTANDIKRL 392
                 +EL+S LT L SL++S ++I+      +KPL NL +LT ++  +   +DIK L
Sbjct: 366 RNQSIDIELLSNLTNLTSLDLSENQIS-----DIKPLSNLTNLTDIDLSENQISDIKPL 419



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 119/357 (33%), Positives = 194/357 (54%), Gaps = 28/357 (7%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           ++  LSNLT+L+    ++     +K  + L NL  +DL +       + ++K L  L +L
Sbjct: 107 DIKPLSNLTNLTDIDLSSNQISDIKVLSNLTNLTDIDLSK-----NQISDIKVLSNLTNL 161

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
            +   +    SD+K LS LTNL S+++S ++++D  I  L  L  LT+L+L    ++   
Sbjct: 162 TVLDLSDNQISDIKVLSNLTNLTSVKLSENQISD--IEVLSNLTNLTVLDLGYNQISDIK 219

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           +  LS L +L YL+L   Q+ D   +  S + +L  L+L  N+I+D  +  L  LTNL S
Sbjct: 220 V--LSNLTNLTYLSLWNNQIGD--IKVLSNLTNLTSLSLWDNQISD--IKPLSNLTNLTS 273

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           L L    I D  +  L+ L NL  L L D Q+    ++ LS LTNL  ++LS   I  G 
Sbjct: 274 LYLWDNQISD--IKPLSNLTNLTYLYLWDNQIA--DIKPLSNLTNLTDLDLSKNQI--GD 327

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           ++ L+ L+SL SL+L   QI D  +  L++LT LT L L+  +  D     L N  NL S
Sbjct: 328 IKPLSNLTSLTSLDLSKNQIAD--IKPLSNLTNLTSLSLWRNQSID--IELLSNLTNLTS 383

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L++    ++D  +K + +L++LT ++LS+N  ++D  ++ +S LT L  L + N+ I
Sbjct: 384 LDLSENQISD--IKPLSNLTNLTDIDLSEN-QISD--IKPLSNLTKLEDLQIQNNPI 435



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 24/108 (22%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS L+NLTSLS  RN +I    ++  + L NL  LDL         + ++K L  L +L 
Sbjct: 353 LSNLTNLTSLSLWRNQSI---DIELLSNLTNLTSLDLS-----ENQISDIKPLSNLTNL- 403

Query: 65  IKWCNCITD--------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 104
                  TD        SD+KPLS LT L+ LQI  + + D    ++ 
Sbjct: 404 -------TDIDLSENQISDIKPLSNLTKLEDLQIQNNPILDKICPFIP 444


>gi|32477504|ref|NP_870498.1| adenylate cyclase regulatory protein [Rhodopirellula baltica SH 1]
 gi|32448058|emb|CAD77575.1| conserved hypothetical protein-putative adenylate cyclase
           regulatory protein [Rhodopirellula baltica SH 1]
          Length = 513

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 127/262 (48%), Gaps = 27/262 (10%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E L+GLS L ++  R  N I   GM + A +  L+ + LE+      GLV L  L  L+S
Sbjct: 232 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKS 289

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           +N  +C  I    MK L     L++LQ   SK+ D  +A LKGL KL  L + GC VT  
Sbjct: 290 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGE 349

Query: 123 CL---------------DS---------LSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 157
            +               DS         +S L ++ +++++ C+L S +G  +  K+  L
Sbjct: 350 GIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLTGL 409

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
             L L   +  DE L     L NLE LNL S  + DE L  L  +  LK L ++ TQ+G 
Sbjct: 410 TYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGD 469

Query: 218 SGLRHLSGLTNLESINLSFTGI 239
                L+ L NL+S+N++ T I
Sbjct: 470 DSFLELAKLPNLKSMNVANTSI 491



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 145/315 (46%), Gaps = 26/315 (8%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I D+ M+ L  L NLK L ++ + +TD  +  +  +  L  L L    VT   L+ L+ L
Sbjct: 178 IDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTSLDALFLRRTGVTDEGLELLTGL 237

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL------------ 178
             L  ++L    + D G +  +KI +L  + L  +++TDE LV L  L            
Sbjct: 238 SKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPLPLKSINFNYCTT 297

Query: 179 ------------TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
                         LE+L  D   I DE +  L GL  LK L +    V   G++H++G 
Sbjct: 298 INGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHIAGN 357

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA 285
             L    L  + + D  L+ ++ L ++  +++ + R  +  G+A L  LTGLT+L L+  
Sbjct: 358 KALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLTGLTYLGLWET 417

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           +  D   A   +  NL  L +    +TD  +  +  ++ L  LN++    L D +   ++
Sbjct: 418 KTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVA-GTQLGDDSFLELA 476

Query: 346 GLTGLVSLNVSNSRI 360
            L  L S+NV+N+ I
Sbjct: 477 KLPNLKSMNVANTSI 491



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 142/317 (44%), Gaps = 41/317 (12%)

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 154
           V +  IA  KG  + +L +L G P T                  N   + D G E    +
Sbjct: 143 VVEFSIANQKGGIEESLQHLRGIPNTTEA-------------TFNGPGIDDAGMENLKSL 189

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
            +LK L L    ITD+ L  +  +T+L++L L   G+ DEGL  LTGL  L+ ++L +T 
Sbjct: 190 ANLKRLTLADTAITDQTLKTVGEMTSLDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTN 249

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL---------------- 258
           +G +G+  L+ +  L  + L  + ++D  L KLA L  LKS+N                 
Sbjct: 250 IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQ 308

Query: 259 ---------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
                    D  +I D  +A L  L+ L  L + G  +T  G  ++   K L   E+   
Sbjct: 309 TPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDS 368

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNL-TDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
            + D G+K I  L ++T +++S+ C L + + +  +  LTGL  L +  ++     L   
Sbjct: 369 SVDDDGLKVISQLPAVTHVDISE-CRLASPEGIAQLGKLTGLTYLGLWETKTNDETLAGF 427

Query: 369 KPLKNLRSLTLESCKVT 385
             L NL  L L+S  VT
Sbjct: 428 GDLVNLEELNLKSTAVT 444



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 116/244 (47%), Gaps = 25/244 (10%)

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           +E L HL+G+ N      +  GI D G+ NL  L NLK L L+DT +    L+ +  +T+
Sbjct: 156 EESLQHLRGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 215

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           L+++ L  TG++D  L  L GLS L++++L    I D G+ +L  +  L  + L  +++T
Sbjct: 216 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 275

Query: 289 DSGAAYLR-------NF-----------------KNLRSLEICGGGLTDAGVKHIKDLSS 324
           D G   L        NF                   L +L+     + D  +  +K LS 
Sbjct: 276 DEGLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSK 335

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           L  L + + C++T + ++ I+G   L    + +S +   GL+ +  L  +  + +  C++
Sbjct: 336 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRL 394

Query: 385 TAND 388
            + +
Sbjct: 395 ASPE 398



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 324
           +  L  L  +   T     G  I D+G   L++  NL+ L +    +TD  +K + +++S
Sbjct: 156 EESLQHLRGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 215

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           L  L L +   +TD+ LEL++GL+ L ++++ N+ I  AG+  L  +K L  + LE  KV
Sbjct: 216 LDALFL-RRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKV 274

Query: 385 TANDIKRL 392
           T   + +L
Sbjct: 275 TDEGLVKL 282


>gi|290984863|ref|XP_002675146.1| LRR_RI domain-containing protein [Naegleria gruberi]
 gi|284088740|gb|EFC42402.1| LRR_RI domain-containing protein [Naegleria gruberi]
          Length = 458

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 157/305 (51%), Gaps = 2/305 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           L +L +LN++  N I +  +K  S L +L +  I  +K+ D G  Y+  + +LT +N+  
Sbjct: 147 LKQLTNLNVE-DNKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYISQMSQLTCMNIGN 205

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +     + +S +  L  LN++  ++ D G    S++  L  L++G+N + +    +L 
Sbjct: 206 NNIGEPGAEYISQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYNNLGNLGSQYLS 265

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            +  L  L ++   + + G   ++ L  L  L +    +G +G R+++ +  L  +++  
Sbjct: 266 QMKKLTYLFIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEMKQLTDLSIGG 325

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I +   R L  ++ L +LN+   ++   G   ++ +  LT LD+F   I D GA ++ 
Sbjct: 326 AKIGEEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNNIEDEGAKHIS 385

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
             KNLR L+I    +TD G K++  L+ LT L+++ N NL+D+  + I+ +T L  L++ 
Sbjct: 386 ELKNLRKLDIGRNNITDEGAKYVSQLNQLTHLSITYN-NLSDEGAKYINTMTQLTKLDIG 444

Query: 357 NSRIT 361
            + I+
Sbjct: 445 GNAIS 449



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 151/309 (48%), Gaps = 2/309 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +  L  LT+L+   +N I  +G+K F+ L +L   ++     +  G   +  + +L  +N
Sbjct: 144 IPQLKQLTNLNVE-DNKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYISQMSQLTCMN 202

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I +   + +S +  L +L I  +++ D G  ++  ++ LT L++    +     
Sbjct: 203 I-GNNNIGEPGAEYISQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYNNLGNLGS 261

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             LS +  L YL +   +L ++G +  S++  L +L +G N I      ++  +  L  L
Sbjct: 262 QYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEMKQLTDL 321

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           ++    IG+EG  +L  +  L  L +   ++GS G + +S +  L S+++ +  I D   
Sbjct: 322 SIGGAKIGEEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNNIEDEGA 381

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + ++ L +L+ L++    ITD G   ++ L  LTHL +    ++D GA Y+     L  L
Sbjct: 382 KHISELKNLRKLDIGRNNITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYINTMTQLTKL 441

Query: 305 EICGGGLTD 313
           +I G  ++D
Sbjct: 442 DIGGNAISD 450



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 132/265 (49%), Gaps = 4/265 (1%)

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
           A C+  L  L +L   N+   ++ ++G + FS++  L   N+  N+I DE   ++  ++ 
Sbjct: 141 AKCIPQLKQLTNL---NVEDNKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYISQMSQ 197

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  +N+ +  IG+ G   ++ +  L  L +   ++G  G RH+S +  L  +++ +  + 
Sbjct: 198 LTCMNIGNNNIGEPGAEYISQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYNNLG 257

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           +   + L+ +  L  L ++  ++ + G   ++ L  LT L +    I  +GA Y+   K 
Sbjct: 258 NLGSQYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEMKQ 317

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L  L I G  + + G +H+K ++ LT LN+  N  L     + IS +  L SL++  + I
Sbjct: 318 LTDLSIGGAKIGEEGARHLKTMNQLTNLNIGYN-RLGSIGAKFISEMKQLTSLDIFYNNI 376

Query: 361 TSAGLRHLKPLKNLRSLTLESCKVT 385
              G +H+  LKNLR L +    +T
Sbjct: 377 EDEGAKHISELKNLRKLDIGRNNIT 401



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 165/348 (47%), Gaps = 30/348 (8%)

Query: 57  LMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 115
           L  ++SLN+ ++ N     D   L  + +L +L I  SK+ + G   +  L++LT LN+E
Sbjct: 101 LQNIQSLNVNQYFNTF---DCHVLEFMGSLNNLTIR-SKIRNEGAKCIPQLKQLTNLNVE 156

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
              +    +   S L  L   N+   ++ D+G +  S++  L  +N+G N I +    ++
Sbjct: 157 DNKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYISQMSQLTCMNIGNNNIGEPGAEYI 216

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
             +  L +LN+    IGD+G  +++ +  L  L++    +G+ G ++LS +  L  + + 
Sbjct: 217 SQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYNNLGNLGSQYLSQMKKLTYLFIE 276

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
              + +   + ++ L  L  L + A  I   G   +T +  LT L + GA+I + GA +L
Sbjct: 277 GNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEMKQLTDLSIGGAKIGEEGARHL 336

Query: 296 R------------------------NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
           +                          K L SL+I    + D G KHI +L +L  L++ 
Sbjct: 337 KTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNNIEDEGAKHISELKNLRKLDIG 396

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           +N N+TD+  + +S L  L  L+++ + ++  G +++  +  L  L +
Sbjct: 397 RN-NITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYINTMTQLTKLDI 443



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I   G +    +  L  L +        G  +LK + +L +LNI + N +     K +
Sbjct: 302 NGIGPNGARYITEMKQLTDLSIGGAKIGEEGARHLKTMNQLTNLNIGY-NRLGSIGAKFI 360

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           S +  L SL I  + + D G  ++  L+ L  L++    +T      +S L  L +L++ 
Sbjct: 361 SEMKQLTSLDIFYNNIEDEGAKHISELKNLRKLDIGRNNITDEGAKYVSQLNQLTHLSIT 420

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
              LSD+G +  + +  L  L++G N I+D+
Sbjct: 421 YNNLSDEGAKYINTMTQLTKLDIGGNAISDD 451



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 63/124 (50%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I +   + L  +  L +L I  +++   G  ++  +++LT L++    +       +S L
Sbjct: 328 IGEEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNNIEDEGAKHISEL 387

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            +L  L++ R  ++D+G +  S++  L  L++ +N ++DE   ++  +T L  L++    
Sbjct: 388 KNLRKLDIGRNNITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYINTMTQLTKLDIGGNA 447

Query: 191 IGDE 194
           I D+
Sbjct: 448 ISDD 451


>gi|290993162|ref|XP_002679202.1| predicted protein [Naegleria gruberi]
 gi|284092818|gb|EFC46458.1| predicted protein [Naegleria gruberi]
          Length = 345

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 165/339 (48%), Gaps = 8/339 (2%)

Query: 24  AQGMKAFAGLINLVKLDLERC-TRIHGGLVNLKGLMKLE-SLNIKWCNCITDSDMKPLSG 81
            Q  K   GL  L +L +     R  G +  LK L  L    N  WC   T   +K    
Sbjct: 13  EQDAKYIGGLKQLTRLTIYSSHIRDIGKISELKQLTYLNVPANGIWC--YTTKQVKEFKQ 70

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           LT   +L I  ++V   G  Y+  L++LT L+++   +    ++ LS L  L YLN++  
Sbjct: 71  LT---TLIIDQNQVGSEGCKYISELKQLTSLSIDENFIYDEGVEYLSELAQLTYLNISNN 127

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            +  +GC+   K+  L  L    N I  E   ++  L  L+ L++    IGD+GL ++  
Sbjct: 128 GVGSEGCKYVGKMKRLTSLGFYNNRIGKEGAKYISTLNQLKQLDISRTNIGDKGLEHIGQ 187

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L  L  L+L   ++G+ G ++LS L  L  +N+S   I +  ++ +  L  L +L ++  
Sbjct: 188 LSQLTSLDLYCNKIGNGGAKYLSELKQLTYLNISENHIGNEGIKYIGELKQLVNLIINNN 247

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           +I + G+  +  L  LT+L++   RI + G  Y+ + K L ++ I    +   G K+I  
Sbjct: 248 RIGNDGVKYIGELKQLTYLNISENRIGNEGIKYIGDLKQLTNIIISRNWIGSEGAKYIGK 307

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           LS LT L LS N N+ ++  + +S L  L  LN+  ++I
Sbjct: 308 LSQLTSLGLSSN-NIDNEGAKYLSELKELSFLNIERNKI 345



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + + GL  L  L + +  I D G   ++ L  LT+L++    I       ++ FK L +L
Sbjct: 17  KYIGGLKQLTRLTIYSSHIRDIG--KISELKQLTYLNVPANGIWCYTTKQVKEFKQLTTL 74

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
            I    +   G K+I +L  LT L++ +N  + D+ +E +S L  L  LN+SN+ + S G
Sbjct: 75  IIDQNQVGSEGCKYISELKQLTSLSIDENF-IYDEGVEYLSELAQLTYLNISNNGVGSEG 133

Query: 365 LRHLKPLKNLRSLTLESCKVTANDIKRL 392
            +++  +K L SL   + ++     K +
Sbjct: 134 CKYVGKMKRLTSLGFYNNRIGKEGAKYI 161


>gi|290996041|ref|XP_002680591.1| predicted protein [Naegleria gruberi]
 gi|284094212|gb|EFC47847.1| predicted protein [Naegleria gruberi]
          Length = 281

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 125/250 (50%)

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           +  LS L  LK L I  S + D G+ ++  L++LT L++    ++      LS L  L +
Sbjct: 17  LNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYLSELKQLTF 76

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L +++  +   G +  S++  L +L +  N I DE   +L  L  L  LN+    IGDEG
Sbjct: 77  LIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQDNRIGDEG 136

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
              +  L  L  L +++ Q+G+ G ++LS L +L  +N+S   I D   + L  L  L  
Sbjct: 137 SKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCELKQLMD 196

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L++    I D G+  L+ L  LTHLD+   +I D G  Y+   K +  L I    + D G
Sbjct: 197 LDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYINNNYIGDEG 256

Query: 316 VKHIKDLSSL 325
            K++ +++ L
Sbjct: 257 TKYLSEMNQL 266



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 133/260 (51%), Gaps = 3/260 (1%)

Query: 46  RIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 103
           RI  G  L +L  L +L+ L+I + + I D  ++ +S L  L +L I  + +++ G  YL
Sbjct: 10  RIKEGEALNHLSELKQLKKLHI-YDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYL 68

Query: 104 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163
             L++LT L ++   + A     +S L  L  L +++  + D+G +  S++  L  LN+ 
Sbjct: 69  SELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQ 128

Query: 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
            N I DE   ++  L  L  L +++  IG+EG   L+ L +L  L +S+ Q+G  G ++L
Sbjct: 129 DNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYL 188

Query: 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
             L  L  +++S   I D  ++ L+GL  L  L++   +I D G+  ++ L  + +L + 
Sbjct: 189 CELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYIN 248

Query: 284 GARITDSGAAYLRNFKNLRS 303
              I D G  YL     L+ 
Sbjct: 249 NNYIGDEGTKYLSEMNQLKD 268



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 130/274 (47%), Gaps = 6/274 (2%)

Query: 103 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162
           +K L KL +   EG       L+ LS L  L  L++    + D+G    S++  L  L++
Sbjct: 1   MKSLTKLKIRIKEG-----EALNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDI 55

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
             N I++    +L  L  L  L +D   IG +G   ++ L  L  L +    +   G ++
Sbjct: 56  RNNGISEYGAKYLSELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKY 115

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           LS L  L  +N+    I D   + +  L  L  L ++  QI + G   L+ L  L  L++
Sbjct: 116 LSELKQLTYLNIQDNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNI 175

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
              +I D GA YL   K L  L+I    + D G+K++  L  LT L++S N  + D+ ++
Sbjct: 176 SNNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYN-KIRDEGVK 234

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
            IS L  ++ L ++N+ I   G ++L  +  L+ 
Sbjct: 235 YISELKEIMYLYINNNYIGDEGTKYLSEMNQLKD 268



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 6/196 (3%)

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
           E L +L+ L  LK L + D+ +G  G+R +S L  L ++++   GIS+   + L+ L  L
Sbjct: 15  EALNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYLSELKQL 74

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
             L +D   I   G   ++ L  LT L +    I D GA YL   K L  L I    + D
Sbjct: 75  TFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQDNRIGD 134

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 373
            G K+I +L  LT L ++ N  + ++  + +S L  L+ LN+SN++I   G ++L  LK 
Sbjct: 135 EGSKYIGELKQLTDLYINNN-QIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCELKQ 193

Query: 374 LRSLTLESCKVTANDI 389
           L  L + SC    NDI
Sbjct: 194 LMDLDI-SC----NDI 204



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 2/237 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S L  LT+L  R NN I+  G K  + L  L  L +++      G   +  L +L  L 
Sbjct: 44  ISELKQLTTLDIR-NNGISEYGAKYLSELKQLTFLIIDKNNIGAKGSKYISELKQLTILI 102

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I D   K LS L  L  L I  +++ D G  Y+  L++LT L +    +     
Sbjct: 103 ID-KNNIDDEGAKYLSELKQLTYLNIQDNRIGDEGSKYIGELKQLTDLYINNNQIGNEGA 161

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             LS L  L  LN++  Q+ D+G +   ++  L  L++  N+I DE + +L GL  L  L
Sbjct: 162 KYLSELKHLILLNISNNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHL 221

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           ++    I DEG+  ++ L  +  L +++  +G  G ++LS +  L+  N  F    D
Sbjct: 222 DISYNKIRDEGVKYISELKEIMYLYINNNYIGDEGTKYLSEMNQLKDHNKDFQYKED 278



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 77/166 (46%), Gaps = 2/166 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS L  LT L+ + +N I  +G K    L  L  L +      + G   L  L  L  LN
Sbjct: 116 LSELKQLTYLNIQ-DNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLN 174

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I D   K L  L  L  L ISC+ + D GI YL GL++LT L++    +    +
Sbjct: 175 IS-NNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGV 233

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
             +S L  + YL +N   + D+G +  S++  LK  N  F    DE
Sbjct: 234 KYISELKEIMYLYINNNYIGDEGTKYLSEMNQLKDHNKDFQYKEDE 279


>gi|59802548|gb|AAX07514.1| putative regulatory subunit [Gemmata sp. Wa1-1]
          Length = 250

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/192 (38%), Positives = 104/192 (54%)

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           +++D   ++ + + +L  LNL   ++TD  L  L  LT L  L L    + D GL  L  
Sbjct: 30  KVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAP 89

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L NL  LEL  TQV  +GL+ L+ LTNL  + L  T ++D  L++LA L SL  L L   
Sbjct: 90  LTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGET 149

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           QIT+ G+  L   T LT LDL   R+TD+G   L  F  L  L + G  +TD  +K +  
Sbjct: 150 QITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAP 209

Query: 322 LSSLTLLNLSQN 333
           L +L  L+LS+N
Sbjct: 210 LKNLAFLSLSRN 221



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           S+  +  KVTD+ +  L  L+ LT LNL    VT A L  LS L  L +L L + +++D 
Sbjct: 23  SVDFALWKVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDA 82

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           G ++ + + +L  L LG  ++TD  L  L  LTNL  L L S  + D GL  L  L +L 
Sbjct: 83  GLKELAPLTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLT 142

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            LEL +TQ+  +G++ L+  T L  ++LS T ++D  ++ LA  + L  LNL    +TDT
Sbjct: 143 LLELGETQITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDT 202

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAA 293
            L  L  L  L  L L  +R    GAA
Sbjct: 203 CLKDLAPLKNLAFLSL--SRNERDGAA 227



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 110/197 (55%), Gaps = 1/197 (0%)

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           S++     + D  L  L  L NL  L L  T+V  +GL+ LS LT L  + L  T ++D 
Sbjct: 23  SVDFALWKVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDA 82

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L++LA L++L +L L + Q+TD GL  L  LT LT L L   ++TD+G   L   K+L 
Sbjct: 83  GLKELAPLTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLT 142

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            LE+    +T+AG+K +   + LT L+LS    +TD  ++ ++  T L  LN+  + +T 
Sbjct: 143 LLELGETQITEAGIKELAPFTKLTRLDLSIT-RVTDAGVKGLAPFTKLTQLNLGGTLVTD 201

Query: 363 AGLRHLKPLKNLRSLTL 379
             L+ L PLKNL  L+L
Sbjct: 202 TCLKDLAPLKNLAFLSL 218



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 100/188 (53%)

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           VT A L  L+ L +L  LNL   +++D G ++ S +  L  L L   ++TD  L  L  L
Sbjct: 31  VTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAPL 90

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           TNL +L L S  + D GL  L  L NL  L L  TQV  +GL+ L+ L +L  + L  T 
Sbjct: 91  TNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQ 150

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           I++  +++LA  + L  L+L   ++TD G+  L   T LT L+L G  +TD+    L   
Sbjct: 151 ITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAPL 210

Query: 299 KNLRSLEI 306
           KNL  L +
Sbjct: 211 KNLAFLSL 218



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 99/179 (55%), Gaps = 1/179 (0%)

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
           +V  + L+ L+ L NL  +NL  T ++D  L++L+ L+ L  L L   ++TD GL  L  
Sbjct: 30  KVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAP 89

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           LT LT L+L   ++TD+G   L    NL  L +    +TDAG+K +  L SLTLL L + 
Sbjct: 90  LTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGET 149

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
             +T+  ++ ++  T L  L++S +R+T AG++ L P   L  L L    VT   +K L
Sbjct: 150 -QITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDL 207



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 1/162 (0%)

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           S++ +   ++D  L++LA L +L  LNL   ++TD GL  L+ LT LTHL L   ++TD+
Sbjct: 23  SVDFALWKVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDA 82

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
           G   L    NL +LE+    +TDAG+K +  L++LT+L L  +  +TD  L+ ++ L  L
Sbjct: 83  GLKELAPLTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLG-STQVTDAGLKELAPLKSL 141

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
             L +  ++IT AG++ L P   L  L L   +VT   +K L
Sbjct: 142 TLLELGETQITEAGIKELAPFTKLTRLDLSITRVTDAGVKGL 183


>gi|290993192|ref|XP_002679217.1| predicted protein [Naegleria gruberi]
 gi|284092833|gb|EFC46473.1| predicted protein [Naegleria gruberi]
          Length = 310

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 154/306 (50%), Gaps = 27/306 (8%)

Query: 77  KPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           K +  L NLK L +S +  + +  +  +  L++L  LN+  C +    +  L+ L  L  
Sbjct: 30  KCICQLKNLKKLDVSYNYHLENEVVELISELRELRELNIRYCDIGVEEVKYLTKLDKLHS 89

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L++   Q+  DG +  S + SL  L++   EI DE    +  L  L  LN++  GIG  G
Sbjct: 90  LDIGINQIYADGAKLLSTMKSLTKLDVAECEIGDEGCQSITELYQLTDLNINGDGIGVGG 149

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
              +  + NLK L++S+   G+ G + +S L+ LE +N+S++ I +  + +L  L +L S
Sbjct: 150 ANCIGQMRNLKSLDISNNFFGNYGAKSISELSQLEILNVSYSDIDEVGVYQLRKLKNLTS 209

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L++   +ITD G   +  L  LTHLD+   +I   GA                       
Sbjct: 210 LSIHHNEITDEGTKYIVELDQLTHLDISNNQIETEGA----------------------- 246

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNL 374
            K I ++S LT LN+S N  + D+  + IS L  L SLNVS  R++  G+  + K LK+L
Sbjct: 247 -KSISEMSQLTSLNISSNI-IGDEGAQYISHLKKLTSLNVSKCRVSEEGVESIRKQLKHL 304

Query: 375 RSLTLE 380
           ++L +E
Sbjct: 305 KTLEVE 310



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 142/265 (53%), Gaps = 2/265 (0%)

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            L ++  E  S++  L+ LN+ + +I  E + +L  L  L SL++    I  +G   L+ 
Sbjct: 48  HLENEVVELISELRELRELNIRYCDIGVEEVKYLTKLDKLHSLDIGINQIYADGAKLLST 107

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           + +L  L++++ ++G  G + ++ L  L  +N++  GI  G    +  + +LKSL++   
Sbjct: 108 MKSLTKLDVAECEIGDEGCQSITELYQLTDLNINGDGIGVGGANCIGQMRNLKSLDISNN 167

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
              + G  +++ L+ L  L++  + I + G   LR  KNL SL I    +TD G K+I +
Sbjct: 168 FFGNYGAKSISELSQLEILNVSYSDIDEVGVYQLRKLKNLTSLSIHHNEITDEGTKYIVE 227

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           L  LT L++S N  +  +  + IS ++ L SLN+S++ I   G +++  LK L SL +  
Sbjct: 228 LDQLTHLDISNN-QIETEGAKSISEMSQLTSLNISSNIIGDEGAQYISHLKKLTSLNVSK 286

Query: 382 CKVTANDIKRLQSRDLPNLVSFRPE 406
           C+V+   ++ ++ + L +L +   E
Sbjct: 287 CRVSEEGVESIR-KQLKHLKTLEVE 310



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 147/302 (48%), Gaps = 4/302 (1%)

Query: 8   LSNLTSLSFR-RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNI 65
           LSN    ++  +N+ IT +  K    L NL KLD+     +   +V L   L +L  LNI
Sbjct: 9   LSNFIFATYAGKNSEITVELAKCICQLKNLKKLDVSYNYHLENEVVELISELRELRELNI 68

Query: 66  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 125
           ++C+ I   ++K L+ L  L SL I  +++   G   L  ++ LT L++  C +      
Sbjct: 69  RYCD-IGVEEVKYLTKLDKLHSLDIGINQIYADGAKLLSTMKSLTKLDVAECEIGDEGCQ 127

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           S++ L  L  LN+N   +   G     ++ +LK L++  N   +     +  L+ LE LN
Sbjct: 128 SITELYQLTDLNINGDGIGVGGANCIGQMRNLKSLDISNNFFGNYGAKSISELSQLEILN 187

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           +    I + G+  L  L NL  L +   ++   G +++  L  L  +++S   I     +
Sbjct: 188 VSYSDIDEVGVYQLRKLKNLTSLSIHHNEITDEGTKYIVELDQLTHLDISNNQIETEGAK 247

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR-NFKNLRSL 304
            ++ +S L SLN+ +  I D G   ++ L  LT L++   R+++ G   +R   K+L++L
Sbjct: 248 SISEMSQLTSLNISSNIIGDEGAQYISHLKKLTSLNVSKCRVSEEGVESIRKQLKHLKTL 307

Query: 305 EI 306
           E+
Sbjct: 308 EV 309



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 6/198 (3%)

Query: 202 LCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
           L NLK L++S +  + +  +  +S L  L  +N+ +  I    ++ L  L  L SL++  
Sbjct: 35  LKNLKKLDVSYNYHLENEVVELISELRELRELNIRYCDIGVEEVKYLTKLDKLHSLDIGI 94

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
            QI   G   L+++  LT LD+    I D G   +     L  L I G G+   G   I 
Sbjct: 95  NQIYADGAKLLSTMKSLTKLDVAECEIGDEGCQSITELYQLTDLNINGDGIGVGGANCIG 154

Query: 321 DLSSLTLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
            + +L  L++S N   N   K+   IS L+ L  LNVS S I   G+  L+ LKNL SL+
Sbjct: 155 QMRNLKSLDISNNFFGNYGAKS---ISELSQLEILNVSYSDIDEVGVYQLRKLKNLTSLS 211

Query: 379 LESCKVTANDIKRLQSRD 396
           +   ++T    K +   D
Sbjct: 212 IHHNEITDEGTKYIVELD 229


>gi|290981696|ref|XP_002673566.1| LRR_RI domain-containing protein [Naegleria gruberi]
 gi|284087150|gb|EFC40822.1| LRR_RI domain-containing protein [Naegleria gruberi]
          Length = 411

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 165/323 (51%), Gaps = 9/323 (2%)

Query: 14  LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 73
           LS + NN    +G   F   I  +K+D E  T +    + L+ + +L  L++++ N  TD
Sbjct: 74  LSLKCNNDDKLKGQ--FLQNIETLKVDRESLTIMFDCKI-LEFMKQLTDLDVQYNNLGTD 130

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG---CPVTAACLDSLSAL 130
            ++K +S L  L++L IS + +   G  Y+  L +LT LN+ G   C  T      +S++
Sbjct: 131 -EVKYISQLKQLRNLDISINNIDKEGAKYISQLSQLTKLNISGNCYCIGTEGA-KHISSM 188

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
             L YL++++ ++ D+G +  S++  L  L +  N I DE   H+ G+  L  L++    
Sbjct: 189 KQLTYLDISKNEIGDEGAKSISELKQLTSLYILTNNIGDEGAKHISGMNQLTELDISFNL 248

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           IG EG+ +++ +  L  L +++ ++G  G ++L  ++ L ++N+    I     ++++ L
Sbjct: 249 IGIEGVRHISSMKQLTSLSINNAKIGD-GAKYLGAMSQLTNLNIFSCNIESNGAKQISAL 307

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
             LK L +   Q+   G   ++ +  L  L + G  I + GA ++   K L +L IC   
Sbjct: 308 QQLKFLGIGYNQLGHEGAKNISEMKQLDSLYICGNDIGERGAKHISGMKRLTTLNICENN 367

Query: 311 LTDAGVKHIKDLSSLTLLNLSQN 333
           + D G K I    SLT+L++  N
Sbjct: 368 IGDNGAKFISQSKSLTILSIYSN 390



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 3/164 (1%)

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           L  +  L  +++ +  +    ++ ++ L  L++L++    I   G   ++ L+ LT L++
Sbjct: 111 LEFMKQLTDLDVQYNNLGTDEVKYISQLKQLRNLDISINNIDKEGAKYISQLSQLTKLNI 170

Query: 283 FG--ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
            G    I   GA ++ + K L  L+I    + D G K I +L  LT L +  N N+ D+ 
Sbjct: 171 SGNCYCIGTEGAKHISSMKQLTYLDISKNEIGDEGAKSISELKQLTSLYILTN-NIGDEG 229

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
            + ISG+  L  L++S + I   G+RH+  +K L SL++ + K+
Sbjct: 230 AKHISGMNQLTELDISFNLIGIEGVRHISSMKQLTSLSINNAKI 273



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 4/138 (2%)

Query: 246 KLAG--LSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           KL G  L ++++L +D   +T       L  +  LT LD+    +      Y+   K LR
Sbjct: 83  KLKGQFLQNIETLKVDRESLTIMFDCKILEFMKQLTDLDVQYNNLGTDEVKYISQLKQLR 142

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRIT 361
           +L+I    +   G K+I  LS LT LN+S NC  +  +  + IS +  L  L++S + I 
Sbjct: 143 NLDISINNIDKEGAKYISQLSQLTKLNISGNCYCIGTEGAKHISSMKQLTYLDISKNEIG 202

Query: 362 SAGLRHLKPLKNLRSLTL 379
             G + +  LK L SL +
Sbjct: 203 DEGAKSISELKQLTSLYI 220


>gi|149176763|ref|ZP_01855374.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148844404|gb|EDL58756.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 416

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 139/275 (50%), Gaps = 3/275 (1%)

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 154
           +TD G  YLK  QKL  L + G  +T   L+ L+ + SL  L L+   ++ D     +  
Sbjct: 129 ITDQGATYLKQ-QKLGHLGITGGSMTDNGLNELAEMNSLRTLGLHHLAITGDQLPP-NTF 186

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
             LK+L+L     T++ L +L    +L  L+L +  +   GL  L+   NL+ L L + +
Sbjct: 187 PKLKMLDLSDTRFTNQGLKNLSPNASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLK 246

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           + ++    L+ +  L  ++L  T ++D    +L+ L  +  L LD  QITD GL  L ++
Sbjct: 247 IKAAAFAKLANMKRLYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATM 306

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
             L  L L GA+ITDSG   L     L  L++    ++D G++ +  + +L +LNLS N 
Sbjct: 307 KNLETLFLPGAKITDSGLKVLSQLPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLS-NT 365

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
            +TD+  +++     L S+   N+ I+   +  ++
Sbjct: 366 RVTDQAKQILLQFPALESIEAFNTSISPVTIEDIR 400



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 123/252 (48%), Gaps = 1/252 (0%)

Query: 70  CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
            +TD+ +  L+ + +L++L +    +T   +       KL +L+L     T   L +LS 
Sbjct: 151 SMTDNGLNELAEMNSLRTLGLHHLAITGDQLPP-NTFPKLKMLDLSDTRFTNQGLKNLSP 209

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
             SL YL+L+   +S  G ++ SK  +L+ L LG  +I       L  +  L  L+L   
Sbjct: 210 NASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKRLYQLDLQGT 269

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
            + D   + L+ L  +  L L  +Q+   GLRHL+ + NLE++ L    I+D  L+ L+ 
Sbjct: 270 AVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKITDSGLKVLSQ 329

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           L  L  L+L   QI+D GL  L+ +  L  L+L   R+TD     L  F  L S+E    
Sbjct: 330 LPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLSNTRVTDQAKQILLQFPALESIEAFNT 389

Query: 310 GLTDAGVKHIKD 321
            ++   ++ I+D
Sbjct: 390 SISPVTIEDIRD 401



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 33/257 (12%)

Query: 139 NRCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI-GDEG 195
           N   ++D G    K  K+G L +       +TD  L  L  + +L +L L    I GD+ 
Sbjct: 125 NPTIITDQGATYLKQQKLGHLGITG---GSMTDNGLNELAEMNSLRTLGLHHLAITGDQL 181

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
             N      LK L+LSDT+  + GL++LS   +L  ++LS T +S   L++L+   +L++
Sbjct: 182 PPN--TFPKLKMLDLSDTRFTNQGLKNLSPNASLVYLHLSNTNVSSAGLQELSKFPNLRA 239

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L L   +I     A L ++  L  LDL G  + D+ A  L     +  L +    +TD G
Sbjct: 240 LRLGNLKIKAAAFAKLANMKRLYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQG 299

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
           ++H+                 T K LE         +L +  ++IT +GL+ L  L  L 
Sbjct: 300 LRHLA----------------TMKNLE---------TLFLPGAKITDSGLKVLSQLPKLD 334

Query: 376 SLTLESCKVTANDIKRL 392
            L L   +++   +++L
Sbjct: 335 YLDLSDTQISDEGLRQL 351



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 9/268 (3%)

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL----DSCGIG 192
            L+   +S      +  I S+     G  ++ D+ L+ L  L ++++L L    +   I 
Sbjct: 71  QLDWWSVSPQTHAFWGNIYSVYTRPSGSFQVDDDFLLELGNLHSIQNLTLGNPHNPTIIT 130

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D+G   L     L  L ++   +  +GL  L+ + +L ++ L    I+   L        
Sbjct: 131 DQGATYLKQ-QKLGHLGITGGSMTDNGLNELAEMNSLRTLGLHHLAITGDQLPP-NTFPK 188

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           LK L+L   + T+ GL  L+    L +L L    ++ +G   L  F NLR+L +    + 
Sbjct: 189 LKMLDLSDTRFTNQGLKNLSPNASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLKIK 248

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 372
            A    + ++  L  L+L Q   + D     +S L  +  L +  S+IT  GLRHL  +K
Sbjct: 249 AAAFAKLANMKRLYQLDL-QGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMK 307

Query: 373 NLRSLTLESCKVTANDIKRLQSRDLPNL 400
           NL +L L   K+T + +K L    LP L
Sbjct: 308 NLETLFLPGAKITDSGLKVLSQ--LPKL 333



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
            LS L  +T L   ++  IT QG++  A + NL  L L        GL  L  L KL+ L
Sbjct: 278 QLSQLDQITQLRLDQSQ-ITDQGLRHLATMKNLETLFLPGAKITDSGLKVLSQLPKLDYL 336

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL---KGLQKLTLLNLEGCPVT 120
           ++     I+D  ++ LS +  L+ L +S ++VTD     L     L+ +   N    PVT
Sbjct: 337 DLS-DTQISDEGLRQLSKIPALRMLNLSNTRVTDQAKQILLQFPALESIEAFNTSISPVT 395


>gi|440717669|ref|ZP_20898151.1| hypothetical protein RBSWK_05211 [Rhodopirellula baltica SWK14]
 gi|436437289|gb|ELP30945.1| hypothetical protein RBSWK_05211 [Rhodopirellula baltica SWK14]
          Length = 442

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 128/262 (48%), Gaps = 27/262 (10%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E L+GLS L ++  R  N I   GM + A +  L+ + LE+      GLV L  L  L+S
Sbjct: 161 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKS 218

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           +N  +C  I    MK L     L++LQ   SK+ D+ +A LKGL KL  L + GC VT  
Sbjct: 219 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGE 278

Query: 123 CL---------------DS---------LSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 157
            +               DS         +S L ++ +++++ C+L S +G  +  K+  L
Sbjct: 279 GIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLIGL 338

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
             L L   +  DE L     L NLE LNL S  + DE L  L  +  LK L ++ TQ+G 
Sbjct: 339 TYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGD 398

Query: 218 SGLRHLSGLTNLESINLSFTGI 239
                L+ L NL+S+N++ T I
Sbjct: 399 DSFLELAKLPNLKSMNVANTSI 420



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 138/291 (47%), Gaps = 17/291 (5%)

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 154
           V +  IA  KG  + +L +L G P T                  N   + D G E    +
Sbjct: 72  VVEFSIANQKGGIEESLQHLSGIPNTTEA-------------TFNGPGIDDAGMENLKSL 118

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
            +LK L L    ITD+ L  +  +T+L++L L   G+ DEGL  LTGL  L+ ++L +T 
Sbjct: 119 ANLKRLTLADTAITDQTLKTVGEMTSLDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTN 178

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS 273
           +G +G+  L+ +  L  + L  + ++D  L KLA L  LKS+N +    I    +  L  
Sbjct: 179 IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQ 237

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
              L +L    ++I D+  A L+    L+ L I G  +T  G++HI    +L    L ++
Sbjct: 238 TPTLENLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFEL-RD 296

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCK 383
            ++ D  L++IS L  +  +++S  R+ S  G+  L  L  L  L L   K
Sbjct: 297 SSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLIGLTYLGLWETK 347



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 143/315 (45%), Gaps = 26/315 (8%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I D+ M+ L  L NLK L ++ + +TD  +  +  +  L  L L    VT   L+ L+ L
Sbjct: 107 IDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTSLDALFLRRTGVTDEGLELLTGL 166

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL------------ 178
             L  ++L    + D G +  +KI +L  + L  +++TDE LV L  L            
Sbjct: 167 SKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPLPLKSINFNYCTT 226

Query: 179 ------------TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
                         LE+L  D   I D  +  L GL  LK L +    V   G++H++G 
Sbjct: 227 INGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGN 286

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA 285
             L    L  + + D  L+ ++ L ++  +++ + R  +  G+A L  L GLT+L L+  
Sbjct: 287 KALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLIGLTYLGLWET 346

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           +  D   A   +  NL  L +    +TD  +  +  ++ L  LN++    L D +   ++
Sbjct: 347 KTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVA-GTQLGDDSFLELA 405

Query: 346 GLTGLVSLNVSNSRI 360
            L  L S+NV+N+ I
Sbjct: 406 KLPNLKSMNVANTSI 420



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 152/335 (45%), Gaps = 28/335 (8%)

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           ++ LSG+ N      +   + D+G+  LK L  L  L L    +T   L ++  + SL  
Sbjct: 88  LQHLSGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTSLDA 147

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L L R  ++D+G E  + +  L+ ++L    I D  +  L  +  L  + L+   + DEG
Sbjct: 148 LFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDEG 207

Query: 196 LVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           LV L  L  LK +  +  T +    ++ L     LE++   ++ I+D S+ +L GLS LK
Sbjct: 208 LVKLAPLP-LKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKLK 266

Query: 255 SLNLDARQIT------------------------DTGLAALTSLTGLTHLDLFGARI-TD 289
            L +    +T                        D GL  ++ L  +TH+D+   R+ + 
Sbjct: 267 RLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASP 326

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
            G A L     L  L +      D  +    DL +L  LNL ++  +TD++L ++  +T 
Sbjct: 327 EGIAQLGKLIGLTYLGLWETKTNDETLAGFGDLVNLEELNL-KSTAVTDESLPVLMKMTK 385

Query: 350 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           L +LNV+ +++       L  L NL+S+ + +  +
Sbjct: 386 LKTLNVAGTQLGDDSFLELAKLPNLKSMNVANTSI 420



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 25/244 (10%)

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           +E L HL G+ N      +  GI D G+ NL  L NLK L L+DT +    L+ +  +T+
Sbjct: 85  EESLQHLSGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 144

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           L+++ L  TG++D  L  L GLS L++++L    I D G+ +L  +  L  + L  +++T
Sbjct: 145 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 204

Query: 289 DSGAAYLR-------NF-----------------KNLRSLEICGGGLTDAGVKHIKDLSS 324
           D G   L        NF                   L +L+     + DA +  +K LS 
Sbjct: 205 DEGLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSK 264

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           L  L + + C++T + ++ I+G   L    + +S +   GL+ +  L  +  + +  C++
Sbjct: 265 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRL 323

Query: 385 TAND 388
            + +
Sbjct: 324 ASPE 327


>gi|290980745|ref|XP_002673092.1| predicted protein [Naegleria gruberi]
 gi|284086673|gb|EFC40348.1| predicted protein [Naegleria gruberi]
          Length = 498

 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 182/395 (46%), Gaps = 31/395 (7%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR---------------- 46
           E L  +  L  L+   N+ I   G K    L  L  L +  C                  
Sbjct: 98  EILDSMKELKKLNIEYNSNIDPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTY 157

Query: 47  --IHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 98
             I G  + ++G      + +L+ L+I   N I     K +SGL  L  L I  +++T  
Sbjct: 158 LLITGNYIGVEGAKYIGEMKQLKQLHIA-NNNIGPEGAKYISGLEQLTFLNIRANEITVD 216

Query: 99  GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
           G  ++  +++LT+LN+ G  +       +S +  L  L+++   + ++G +  S++ ++ 
Sbjct: 217 GAKFISEMKQLTVLNIIGNNICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMMNIT 276

Query: 159 VLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
            LN+GFN I D  +C   +K LT+L   N++S  IG  G+  ++    L  L ++   + 
Sbjct: 277 KLNIGFNSINDGVKCFGEMKQLTDL---NVNSRCIGSNGVEYISSFNQLTHLSIAKNLIS 333

Query: 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276
                H+S + NL  +++S   I D  ++ ++ ++ L  LN+ +  IT  G+  +  +  
Sbjct: 334 LYEAMHISQMKNLIKLDISDNDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDN 393

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           LT+L      I   GA  +   K+L  L I    + D G K I ++  LT L++  N  +
Sbjct: 394 LTYLISAHNNIGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYN-EI 452

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
            D+ ++ + G+  L  LN  ++ I+  G ++++ +
Sbjct: 453 GDEGVKFLCGMKQLTRLNTVDNNISDEGEKYIREM 487



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 142/308 (46%), Gaps = 8/308 (2%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           NN I  +G K  +GL  L  L++        G   +  + +L  LNI   N I D   K 
Sbjct: 186 NNNIGPEGAKYISGLEQLTFLNIRANEITVDGAKFISEMKQLTVLNI-IGNNICDEGAKF 244

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT--AACLDSLSALGSLFYL 136
           +SG+  L +L IS + + ++G  Y+  +  +T LN+    +     C   +  L  L   
Sbjct: 245 ISGMKQLTNLDISVNNIGENGAKYVSEMMNITKLNIGFNSINDGVKCFGEMKQLTDL--- 301

Query: 137 NLN-RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           N+N RC +  +G E  S    L  L++  N I+    +H+  + NL  L++    IGD G
Sbjct: 302 NVNSRC-IGSNGVEYISSFNQLTHLSIAKNLISLYEAMHISQMKNLIKLDISDNDIGDNG 360

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           + +++ +  L  L +S   +   G++++  + NL  +  +   I     ++++ +  L  
Sbjct: 361 VQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLISAHNNIGAKGAKQISEMKHLAQ 420

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L++    + D G   ++ +  LT LD+    I D G  +L   K L  L      ++D G
Sbjct: 421 LSIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKFLCGMKQLTRLNTVDNNISDEG 480

Query: 316 VKHIKDLS 323
            K+I++++
Sbjct: 481 EKYIREMN 488



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 3/233 (1%)

Query: 148 CEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           CE    +  LK LN+ +N   D     ++  L  L  L +  C        +L  L +L 
Sbjct: 97  CEILDSMKELKKLNIEYNSNIDPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLT 156

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            L ++   +G  G +++  +  L+ ++++   I     + ++GL  L  LN+ A +IT  
Sbjct: 157 YLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEITVD 216

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
           G   ++ +  LT L++ G  I D GA ++   K L +L+I    + + G K++ ++ ++T
Sbjct: 217 GAKFISEMKQLTVLNIIGNNICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMMNIT 276

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
            LN+  N    +  ++    +  L  LNV++  I S G+ ++     L  L++
Sbjct: 277 KLNIGFNS--INDGVKCFGEMKQLTDLNVNSRCIGSNGVEYISSFNQLTHLSI 327



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 127/279 (45%), Gaps = 3/279 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S +  LT L+   NN I  +G K  +G+  L  LD+        G   +  +M +  LN
Sbjct: 221 ISEMKQLTVLNIIGNN-ICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMMNITKLN 279

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I + N I D  +K    +  L  L ++   +  +G+ Y+    +LT L++    ++    
Sbjct: 280 IGF-NSINDG-VKCFGEMKQLTDLNVNSRCIGSNGVEYISSFNQLTHLSIAKNLISLYEA 337

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             +S + +L  L+++   + D+G +  S++  L  LN+   +IT   + ++  + NL  L
Sbjct: 338 MHISQMKNLIKLDISDNDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYL 397

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
                 IG +G   ++ + +L  L +    VG  G + +S +  L  +++ +  I D  +
Sbjct: 398 ISAHNNIGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEGV 457

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
           + L G+  L  LN     I+D G   +  +    H+ ++
Sbjct: 458 KFLCGMKQLTRLNTVDNNISDEGEKYIREMNLADHVGIY 496


>gi|290981666|ref|XP_002673551.1| predicted protein [Naegleria gruberi]
 gi|284087135|gb|EFC40807.1| predicted protein [Naegleria gruberi]
          Length = 438

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 188/386 (48%), Gaps = 33/386 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS    LTS +   NN I+A+G      L  L  LD+        G   +  L +L+ LN
Sbjct: 52  LSECKELTSANLYGNN-ISAEGASYLTKL-KLTNLDIRTNELGAEGAKFIGQLSQLKILN 109

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I     K L  L  L +L I+C+++ + G   +  +++LT L++    +    +
Sbjct: 110 I-GVNDICAEGAKYLVALNQLTNLGINCNRIGEEGAKSISEMKQLTNLDISNNYIGETGV 168

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           + +S +G+L  L +    L  +GC+K  K+  L  L++  N+I  E    +  +  L  L
Sbjct: 169 EYVSEMGNLTTLTIIENNLRAEGCKKIRKLKQLTRLSIYDNKIGAEGAKFISEMEQLMFL 228

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
            +++  I +EG   ++ L NL  L++S  ++GS G +H+S    L  +  S+  I+  S 
Sbjct: 229 EINNNSIRNEGTEYISQLGNLTELDISHNEIGSEGAKHISQFKQLTCLRFSYNKINAESF 288

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
             L+ L+ L  L + +  I D  + ++T+L  LT L L G  I+D+G             
Sbjct: 289 EYLSTLTQLTDLRICSSSIGDDSIKSITNLKSLTILYLNGNNISDNGC------------ 336

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
                       K+I +L+ LT L+++ N N++D+  + +S LT L  L+VS +RI + G
Sbjct: 337 ------------KNISELTQLTDLSMALN-NISDEGCKFLSQLTQLTELDVSYNRIGNIG 383

Query: 365 LRHLKPLKNLRSLTLESCKVTANDIK 390
             ++  +K L+ L ++     AN+I+
Sbjct: 384 AEYINEMKQLKHLAIQ-----ANNIR 404



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 24/165 (14%)

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L S+ +   +I + G+  L+    LT  +L+G  I+  GA+YL   K L +L+I    L
Sbjct: 33  ELTSIEIGYNRIGNEGVKYLSECKELTSANLYGNNISAEGASYLTKLK-LTNLDIRTNEL 91

Query: 312 TDAGVKHIKDLSSLTLL----------------------NLSQNCN-LTDKTLELISGLT 348
              G K I  LS L +L                      NL  NCN + ++  + IS + 
Sbjct: 92  GAEGAKFIGQLSQLKILNIGVNDICAEGAKYLVALNQLTNLGINCNRIGEEGAKSISEMK 151

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
            L +L++SN+ I   G+ ++  + NL +LT+    + A   K+++
Sbjct: 152 QLTNLDISNNYIGETGVEYVSEMGNLTTLTIIENNLRAEGCKKIR 196


>gi|421611905|ref|ZP_16053033.1| hypothetical protein RBSH_02839 [Rhodopirellula baltica SH28]
 gi|408497310|gb|EKK01841.1| hypothetical protein RBSH_02839 [Rhodopirellula baltica SH28]
          Length = 455

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 127/262 (48%), Gaps = 27/262 (10%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E L+GLS L ++  R +N I   GM + A +  L  + LE+      GLV L  L  L+S
Sbjct: 174 ELLTGLSKLRAIDLRNSN-IGDAGMDSLAKIKTLADVQLEKSKVTDEGLVKLTSL-PLKS 231

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           +N  +C  I    MK L     L++LQ   SK+ D  +A LKGL KL  L + GC VT  
Sbjct: 232 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGE 291

Query: 123 CL---------------DS---------LSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 157
            +               DS         +S L ++ Y++++ C+L S +G  +  ++  L
Sbjct: 292 GIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGELTGL 351

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
             L L   +  DE L     L NLE LNL S  + DE L  L  +  LK L ++ TQ+G 
Sbjct: 352 TYLGLWETKTNDETLSGFGDLINLEELNLKSTSVTDESLPVLMKMIKLKTLNVAGTQLGD 411

Query: 218 SGLRHLSGLTNLESINLSFTGI 239
                L+ L NL+S+N++ T I
Sbjct: 412 DSFLELAKLPNLKSMNVANTSI 433



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 138/317 (43%), Gaps = 41/317 (12%)

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 154
           V +  IA  KG  + +L +L G P T                  N   + D G E  + +
Sbjct: 85  VVEFSIANQKGGIEESLQHLSGIPNTTKA-------------TFNGPGIDDAGMENLTSL 131

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
             LK L L    ITDE L     L +++ L L   G+ DEGL  LTGL  L+ ++L ++ 
Sbjct: 132 PKLKYLTLADTAITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSN 191

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL---------------- 258
           +G +G+  L+ +  L  + L  + ++D  L KL  L  LKS+N                 
Sbjct: 192 IGDAGMDSLAKIKTLADVQLEKSKVTDEGLVKLTSL-PLKSINFNYCTTINGPTMKMLGQ 250

Query: 259 ---------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
                    D  +I D  +A L  L+ L  L + G  +T  G  ++   K L   E+   
Sbjct: 251 TPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDS 310

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNL-TDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
            + D G+K I  L ++T +++S+ C L + + +  +  LTGL  L +  ++     L   
Sbjct: 311 SVDDDGLKVISQLPAVTYVDISE-CRLASPEGIAQLGELTGLTYLGLWETKTNDETLSGF 369

Query: 369 KPLKNLRSLTLESCKVT 385
             L NL  L L+S  VT
Sbjct: 370 GDLINLEELNLKSTSVT 386



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 149/348 (42%), Gaps = 52/348 (14%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 69
           N+   S         + ++  +G+ N  K           G+ NL  L KL+ L +    
Sbjct: 84  NVVEFSIANQKGGIEESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADT- 142

Query: 70  CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
            ITD  +K    L +++ L +  + VTD G+  L GL KL  ++L    +  A +DSL+ 
Sbjct: 143 AITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAK 202

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF------------------------- 164
           + +L  + L + +++D+G  K + +  LK +N  +                         
Sbjct: 203 IKTLADVQLEKSKVTDEGLVKLTSL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDY 261

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           ++I DE +  LKGL+ L+ L +  C +  EG+ ++ G   L   EL D+ V   GL+ +S
Sbjct: 262 SKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVIS 321

Query: 225 GLTNLESINLS---------------FTGIS----------DGSLRKLAGLSSLKSLNLD 259
            L  +  +++S                TG++          D +L     L +L+ LNL 
Sbjct: 322 QLPAVTYVDISECRLASPEGIAQLGELTGLTYLGLWETKTNDETLSGFGDLINLEELNLK 381

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           +  +TD  L  L  +  L  L++ G ++ D     L    NL+S+ + 
Sbjct: 382 STSVTDESLPVLMKMIKLKTLNVAGTQLGDDSFLELAKLPNLKSMNVA 429



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 152/333 (45%), Gaps = 6/333 (1%)

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           +  ++ LSG+ N      +   + D+G+  L  L KL  L L    +T   L +   L S
Sbjct: 98  EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 157

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           +  L L R  ++D+G E  + +  L+ ++L  + I D  +  L  +  L  + L+   + 
Sbjct: 158 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVT 217

Query: 193 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
           DEGLV LT L  LK +  +  T +    ++ L     LE++   ++ I+D S+ +L GLS
Sbjct: 218 DEGLVKLTSLP-LKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLS 276

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            LK L +    +T  G+  +     L   +L  + + D G   +     +  ++I    L
Sbjct: 277 KLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRL 336

Query: 312 -TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
            +  G+  + +L+ LT L L +     D+TL     L  L  LN+ ++ +T   L  L  
Sbjct: 337 ASPEGIAQLGELTGLTYLGLWE-TKTNDETLSGFGDLINLEELNLKSTSVTDESLPVLMK 395

Query: 371 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
           +  L++L +   ++   D   L+   LPNL S 
Sbjct: 396 MIKLKTLNVAGTQL--GDDSFLELAKLPNLKSM 426


>gi|46445968|ref|YP_007333.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399609|emb|CAF23058.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 616

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 126/239 (52%), Gaps = 9/239 (3%)

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL--DSCGIGDEGLVNLTGLCNLKC 207
           +++ +  + +L L   E+TD  L HL  L NL  LNL  D   + D GL +LT L NL+ 
Sbjct: 314 EYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQH 373

Query: 208 LELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQIT 264
           L L    ++   GL HL  L NL+ +NL     ++D  L  L  L +L+ LNL    ++T
Sbjct: 374 LNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLT 433

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGA--AYLRNFKNLRSLEICG-GGLTDAGVKHIKD 321
           D GLA LT L  L HLDL    +  +GA  AYL    +L+ L +C    LTD G+ H+  
Sbjct: 434 DAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCCNELTDIGLMHLTP 493

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTL 379
           L +L  L+LS   NLTD  L  ++ L  L  LN+     +T  GL HL  L NLR L L
Sbjct: 494 LVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRCCDNLTKTGLMHLTSLVNLRQLVL 552



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/273 (34%), Positives = 145/273 (53%), Gaps = 16/273 (5%)

Query: 4   NLSGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMK 59
           N S  + LT +     ++  +T   +   A L+NL  L+L  +       GL +L  L+ 
Sbjct: 311 NFSEYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVN 370

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           L+ LN+ WC+ +TD  +  L  L NL+ L +  C+K+TD+G+A+L+ L  L  LNL  CP
Sbjct: 371 LQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCP 430

Query: 119 -VTAACLDSLSALGSLFYLNLNRCQLSDDGC--EKFSKIGSLKVLNL-GFNEITDECLVH 174
            +T A L  L+ L +L +L+L+ C L+  G      + +  L+ LNL   NE+TD  L+H
Sbjct: 431 KLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCCNELTDIGLMH 490

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESI 232
           L  L NL+ L+L  C  + D GL++LT L NL+ L L     +  +GL HL+ L NL  +
Sbjct: 491 LTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRCCDNLTKTGLMHLTSLVNLRQL 550

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
            LS+           AGL+ L   + +A Q  D
Sbjct: 551 VLSWYSPDLNE----AGLAHLIP-HFEASQPWD 578



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 145/283 (51%), Gaps = 30/283 (10%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           L + E +   + N I   +    + LT++  L +   ++TD+ +A+L  L  L  LNL G
Sbjct: 293 LTEFEKIINYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSG 352

Query: 117 --CPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECL 172
               +T A L  L+ L +L +LNL+ C +L+DDG      + +L+ LNL   N++TD  L
Sbjct: 353 DMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGL 412

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
            HL+ L NL+ LNL  C  + D GL +LT L NL+ L+LS                    
Sbjct: 413 AHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLS-------------------W 453

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RITD 289
             L+FTG     L  LA L  L+ LNL    ++TD GL  LT L  L HLDL G   +TD
Sbjct: 454 CPLNFTG---AGLAYLAPLIDLQYLNLCCCNELTDIGLMHLTPLVNLQHLDLSGCDNLTD 510

Query: 290 SGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLS 331
           +G  +L +  NL+ L + C   LT  G+ H+  L +L  L LS
Sbjct: 511 AGLMHLTSLVNLQHLNLRCCDNLTKTGLMHLTSLVNLRQLVLS 553



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/286 (36%), Positives = 143/286 (50%), Gaps = 42/286 (14%)

Query: 98  SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFSKIG 155
           S  AYL  +    LL L+   +T A L  L+ L +L +LNL  +   L+D G    + + 
Sbjct: 313 SEYAYLTDIH---LLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLV 369

Query: 156 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD- 212
           +L+ LNL + +++TD+ L HL+ L NL+ LNL  C  + D GL +L  L NL+ L LS  
Sbjct: 370 NLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKC 429

Query: 213 TQVGSSGLRHLSGLTNLESINLS-----FTGISDGSLRKLAGLSSLKSLNLDA-RQITDT 266
            ++  +GL HL+ L NL+ ++LS     FTG     L  LA L  L+ LNL    ++TD 
Sbjct: 430 PKLTDAGLAHLTPLVNLQHLDLSWCPLNFTG---AGLAYLAPLIDLQYLNLCCCNELTDI 486

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
           GL  LT L  L HLDL G                          LTDAG+ H+  L +L 
Sbjct: 487 GLMHLTPLVNLQHLDLSGC-----------------------DNLTDAGLMHLTSLVNLQ 523

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVS--NSRITSAGLRHLKP 370
            LNL    NLT   L  ++ L  L  L +S  +  +  AGL HL P
Sbjct: 524 HLNLRCCDNLTKTGLMHLTSLVNLRQLVLSWYSPDLNEAGLAHLIP 569



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 95/165 (57%), Gaps = 6/165 (3%)

Query: 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL--DARQITDTGLAALTSLTGLTHLD 281
           + LT++  + L    ++D  L  LA L +L+ LNL  D   +TD GLA LT L  L HL+
Sbjct: 316 AYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLN 375

Query: 282 LFGA-RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L    ++TD G A+LR+  NL+ L + C   LTDAG+ H++ L +L  LNLS+   LTD 
Sbjct: 376 LHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDA 435

Query: 340 TLELISGLTGLVSLNVSNSRI--TSAGLRHLKPLKNLRSLTLESC 382
            L  ++ L  L  L++S   +  T AGL +L PL +L+ L L  C
Sbjct: 436 GLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCC 480



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 12/185 (6%)

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLS--FTGISDGSLRKLAGLSSLKSLNLDA-R 261
           LK  EL+D ++      HL+ L NL  +NLS   + ++D  L  L  L +L+ LNL    
Sbjct: 326 LKSWELTDARLA-----HLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLNLHWCD 380

Query: 262 QITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 319
           ++TD GLA L SL  L HL+L    ++TD+G A+LR   NL+ L +     LTDAG+ H+
Sbjct: 381 KLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDAGLAHL 440

Query: 320 KDLSSLTLLNLSQ-NCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSL 377
             L +L  L+LS    N T   L  ++ L  L  LN+   + +T  GL HL PL NL+ L
Sbjct: 441 TPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCCNELTDIGLMHLTPLVNLQHL 500

Query: 378 TLESC 382
            L  C
Sbjct: 501 DLSGC 505



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 91/175 (52%), Gaps = 5/175 (2%)

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
           V SS L   S LT  E I   F    +G +  + A L+ +  L L + ++TD  LA L  
Sbjct: 282 VVSSLLNQASHLTEFEKIINYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAP 341

Query: 274 LTGLTHLDLFG--ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 330
           L  L HL+L G  + +TD+G A+L    NL+ L +     LTD G+ H++ L +L  LNL
Sbjct: 342 LVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNL 401

Query: 331 SQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKV 384
                LTD  L  +  L  L  LN+S   ++T AGL HL PL NL+ L L  C +
Sbjct: 402 HCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPL 456


>gi|290999671|ref|XP_002682403.1| LRR_RI domain-containing protein [Naegleria gruberi]
 gi|284096030|gb|EFC49659.1| LRR_RI domain-containing protein [Naegleria gruberi]
          Length = 403

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 152/325 (46%), Gaps = 25/325 (7%)

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           + L+ ++SL      C  +  +K +S L  L  L I  S + D G+ Y+  L++LT    
Sbjct: 104 RKLILMKSLTKLIIRCDDEEGVKYISELKQLTKLTIYGSHIGDEGVRYISELKQLT---- 159

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                               YL++    +S+ G +   ++  L  L +  N + +E   +
Sbjct: 160 --------------------YLSIPSNGISEYGAKHLRELKQLTTLIIFCNRVGNEGSKY 199

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +  L  L +L++D   IG EG   L+ L  L CL++S   +G  G +++S +  L ++++
Sbjct: 200 ISELKQLTTLSIDENDIGAEGAKYLSELTQLTCLDISSNWLGDEGAKYVSKMKQLTTLHI 259

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   I +   + ++ L+ LK+L++    I D GL     L  L  LDL   RI D GA Y
Sbjct: 260 NSNRIGNEGSKFISSLNQLKNLDICKNDIGDEGLEYFGQLAQLKSLDLSYNRIGDEGAQY 319

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           L   K L  L+I    L D G   I +L  L  L ++ N  + ++  + IS L  L  L+
Sbjct: 320 LSELKQLIYLDIKTNHLGDKGAMPIGELKKLIYLYINNN-KIRNEGAKYISELKQLTKLD 378

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTL 379
           + N+ IT  G ++   +K L  LT+
Sbjct: 379 IRNNFITEEGTKYFTEMKQLIDLTI 403


>gi|290998898|ref|XP_002682017.1| predicted protein [Naegleria gruberi]
 gi|284095643|gb|EFC49273.1| predicted protein [Naegleria gruberi]
          Length = 408

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 145/277 (52%), Gaps = 2/277 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SLNI   N I     K +S +T L SL IS +++   G  ++  +++LT L++  
Sbjct: 130 MKQLTSLNIS-DNQIGLEGAKYISEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLDISV 188

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +    +  +S +  L  L+++  Q+  +G +  S++  L  L++  N I  E    + 
Sbjct: 189 NRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTSLDISVNRIGVEGAKFIS 248

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            +  L SLN+    IG EG+  ++ +  L  L++SD Q+G  G +++S +T L S+++S 
Sbjct: 249 EMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQIGL-GAKYISEMTQLTSLDISV 307

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I D   + ++ +  L SL++   QI   G   ++ +T LT L +   RI   GA ++ 
Sbjct: 308 NRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSLVITSNRIGVEGAKFIS 367

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
             K L SL+I G  + D GVK I ++  LT LN+S N
Sbjct: 368 EMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNISVN 404



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 144/291 (49%), Gaps = 30/291 (10%)

Query: 118 PVTAACLDSL------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
            V+   LDSL      S +  L  LN++  Q+  +G +  S++  L  L++  N I  E 
Sbjct: 112 KVSRRLLDSLEQPKFISEMKQLTSLNISDNQIGLEGAKYISEMTQLTSLDISVNRIGVEG 171

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
              +  +  L SL++    IG EG+  ++ +  L  L++SD Q+G  G +++S +T L S
Sbjct: 172 AKFISEMKQLTSLDISVNRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTS 231

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNL--------------DARQIT-------DTGLAA 270
           +++S   I     + ++ +  L SLN+              + +Q+T         GL A
Sbjct: 232 LDISVNRIGVEGAKFISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQIGLGA 291

Query: 271 --LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
             ++ +T LT LD+   RI D GA ++   K L SL+IC   +   G K I +++ LT L
Sbjct: 292 KYISEMTQLTSLDISVNRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSL 351

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
            ++ N  +  +  + IS +  L SL++S +RI   G++ +  +K L SL +
Sbjct: 352 VITSN-RIGVEGAKFISEMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNI 401



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 141/284 (49%), Gaps = 5/284 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESL 63
           +S +  LTSL+   +N I  +G K  + +  L  LD+    RI   G   +  + +L SL
Sbjct: 127 ISEMKQLTSLNIS-DNQIGLEGAKYISEMTQLTSLDIS-VNRIGVEGAKFISEMKQLTSL 184

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           +I   N I    +K +S +  L SL IS +++   G  Y+  + +LT L++    +    
Sbjct: 185 DIS-VNRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTSLDISVNRIGVEG 243

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
              +S +  L  LN++  ++  +G +  S++  L  L++  N+I      ++  +T L S
Sbjct: 244 AKFISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQIGLGAK-YISEMTQLTS 302

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           L++    IGDEG   ++ +  L  L++ D Q+G  G + +S +T L S+ ++   I    
Sbjct: 303 LDISVNRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSLVITSNRIGVEG 362

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
            + ++ +  L SL++   +I D G+  ++ +  LT L++   RI
Sbjct: 363 AKFISEMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNISVNRI 406



 Score = 44.7 bits (104), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 5/213 (2%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESL 63
           +S +  LTSL    +N I  +G K  + +  L  LD+    RI   G   +  + +L SL
Sbjct: 199 ISEMKQLTSLDIS-DNQIGLEGSKYISEMTQLTSLDIS-VNRIGVEGAKFISEMKQLTSL 256

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           NI   N I    +K +S +  L SL IS +++   G  Y+  + +LT L++    +    
Sbjct: 257 NIS-VNRIGVEGVKFISEMKQLTSLDISDNQI-GLGAKYISEMTQLTSLDISVNRIGDEG 314

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
              +S +  L  L++   Q+  +G +  S++  L  L +  N I  E    +  +  L S
Sbjct: 315 AKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSLVITSNRIGVEGAKFISEMKQLTS 374

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
           L++    IGDEG+  ++ +  L  L +S  ++G
Sbjct: 375 LDISGNRIGDEGVKFISEMKQLTSLNISVNRIG 407


>gi|290970785|ref|XP_002668255.1| predicted protein [Naegleria gruberi]
 gi|284081550|gb|EFC35511.1| predicted protein [Naegleria gruberi]
          Length = 295

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 146/291 (50%), Gaps = 1/291 (0%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           +  L SL I+ + + D G+  +  +++LT L++    +       +S +  L  L+++  
Sbjct: 1   MKQLTSLNINYNNIGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDN 60

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            +  +G +  S++  L  LN+  NEI  E   ++  +  L SL+++   IG EG   ++ 
Sbjct: 61  NIGVEGVKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISE 120

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           +  L  L++S   +G  G + +S +  L S+N+    I D   + ++ +  L SLN+   
Sbjct: 121 MKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDN 180

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
            I   G   ++ +  LT L++    I D GA Y+   K L SL I    + D G K+I +
Sbjct: 181 NIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISE 240

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 372
           +  LT L+++ N  +  +  +LIS +  L SLN++++ I   G ++L  +K
Sbjct: 241 MKQLTSLDINWN-KIGVEGAKLISEMKQLTSLNINDNNIGVEGAKYLSEMK 290



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 140/277 (50%), Gaps = 1/277 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SLNI + N I D  +K +S +  L SL I+ + +   G  Y+  +++LT L++  
Sbjct: 1   MKQLTSLNINYNN-IGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISD 59

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +    +  +S +  L  LN+   ++  +G +  S++  L  L++  N I  E   ++ 
Sbjct: 60  NNIGVEGVKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYIS 119

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            +  L SL++    IG EG   ++ +  L  L +   ++G  G +++S +  L S+N+S 
Sbjct: 120 EMKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISD 179

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I     + ++ +  L SLN++  +I D G   ++ +  LT L++   +I D GA Y+ 
Sbjct: 180 NNIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYIS 239

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
             K L SL+I    +   G K I ++  LT LN++ N
Sbjct: 240 EMKQLTSLDINWNKIGVEGAKLISEMKQLTSLNINDN 276



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 125/244 (51%), Gaps = 7/244 (2%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           LN+ +N I DE +  +  +  L SL+++   IG EG   ++ +  L  L++SD  +G  G
Sbjct: 7   LNINYNNIGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDNNIGVEG 66

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
           ++ +S +  L S+N+    I     + ++ +  L SL+++   I   G   ++ +  LT 
Sbjct: 67  VKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISEMKQLTS 126

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           LD+    I   GA  +   K L SL I    + D G K+I ++  LT LN+S N N+  +
Sbjct: 127 LDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDN-NIGVE 185

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TANDIKRLQ 393
             +LIS +  L SLN++ + I   G +++  +K L SL +   K+        +++K+L 
Sbjct: 186 GAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISEMKQLT 245

Query: 394 SRDL 397
           S D+
Sbjct: 246 SLDI 249



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 132/271 (48%), Gaps = 1/271 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SL+I + N   +   K +S +  L SL IS + +   G+  +  +++LT LN+  
Sbjct: 25  MKQLTSLDINYNNIGVEG-AKYISEMKQLTSLDISDNNIGVEGVKLISEMKQLTSLNIRI 83

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +       +S +  L  L++N   +  +G +  S++  L  L++ +N I  E    + 
Sbjct: 84  NEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISEMKQLTSLDISWNNIGVEGAKLIS 143

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            +  L SLN+    IGDEG   ++ +  L  L +SD  +G  G + +S +  L S+N+++
Sbjct: 144 EMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDNNIGVEGAKLISEMKQLTSLNINW 203

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I D   + ++ +  L SLN+   +I D G   ++ +  LT LD+   +I   GA  + 
Sbjct: 204 NEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISEMKQLTSLDINWNKIGVEGAKLIS 263

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
             K L SL I    +   G K++ ++   T+
Sbjct: 264 EMKQLTSLNINDNNIGVEGAKYLSEMKRKTI 294



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 25/202 (12%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L SLN++   IGDEG+  ++ +  L  L+++   +G  G +++S +  L S+++S  
Sbjct: 1   MKQLTSLNINYNNIGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDN 60

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I    ++ ++ +  L SLN+   +I + G+                      GA Y+  
Sbjct: 61  NIGVEGVKLISEMKQLTSLNI---RINEIGV---------------------EGAKYISE 96

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
            K L SL+I    +   G K+I ++  LT L++S N N+  +  +LIS +  L SLN+  
Sbjct: 97  MKQLTSLDINCNNIGVEGAKYISEMKQLTSLDISWN-NIGVEGAKLISEMKQLTSLNIRR 155

Query: 358 SRITSAGLRHLKPLKNLRSLTL 379
           + I   G +++  +K L SL +
Sbjct: 156 NEIGDEGAKYISEMKQLTSLNI 177


>gi|449132603|ref|ZP_21768618.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
 gi|448888282|gb|EMB18604.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
          Length = 455

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 123/262 (46%), Gaps = 27/262 (10%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E L+GLS L ++  R  N I   GM   A +  L  + LE+      GLV L  L  L+ 
Sbjct: 174 ELLTGLSKLRAIDLRNTN-IGDAGMDPLAKIKTLADVQLEKSKVTDEGLVKLAPL-PLKY 231

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           +N  +C  I    MK L     L+ LQ   SK+ D+ +A LKGL KLT L + GC VT  
Sbjct: 232 INFNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLSKLTHLRIRGCDVTGE 291

Query: 123 ------------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 157
                                    L+ +S L ++ +++++ C+L S +G  +  K+  L
Sbjct: 292 GIKHIANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISECRLASPEGIAQLGKLTGL 351

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
             L L   +  D  L     L NLE LNL S  + D+ L  L  +  LK L ++ TQ+G 
Sbjct: 352 TYLGLWETKTNDATLEAFGELVNLEELNLKSTSVTDQSLPVLMKMTKLKTLNVAGTQLGD 411

Query: 218 SGLRHLSGLTNLESINLSFTGI 239
                L+ L NL+S+N++ T I
Sbjct: 412 DSFLELAKLPNLKSMNVANTSI 433



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 149/291 (51%), Gaps = 4/291 (1%)

Query: 97  DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 156
           +  + +L G+    +    G  +  A +++L++L  L  L L+   ++D   E   K+ +
Sbjct: 98  EESMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERLILSDTAITDRTIETAGKMNT 157

Query: 157 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
           L+VL L    +TDE L  L GL+ L +++L +  IGD G+  L  +  L  ++L  ++V 
Sbjct: 158 LEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDPLAKIKTLADVQLEKSKVT 217

Query: 217 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
             GL  L+ L  L+ IN ++ T I+  +++ L    +L+ L  D  +I D  +A L  L+
Sbjct: 218 DEGLVKLAPLP-LKYINFNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLS 276

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            LTHL + G  +T  G  ++ N K L   E+    + D G++ I  L ++T +++S+ C 
Sbjct: 277 KLTHLRIRGCDVTGEGIKHIANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISE-CR 335

Query: 336 L-TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           L + + +  +  LTGL  L +  ++   A L     L NL  L L+S  VT
Sbjct: 336 LASPEGIAQLGKLTGLTYLGLWETKTNDATLEAFGELVNLEELNLKSTSVT 386



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 142/333 (42%), Gaps = 57/333 (17%)

Query: 6   SGLSNLTSLS-----FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           +G+ NLTSL+        + AIT + ++    +  L  L L R      GL  L GL KL
Sbjct: 123 AGMENLTSLTKLERLILSDTAITDRTIETAGKMNTLEVLFLRRTGVTDEGLELLTGLSKL 182

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            +++++  N I D+ M PL+ +  L  +Q+  SKVTD G+  L  L              
Sbjct: 183 RAIDLRNTN-IGDAGMDPLAKIKTLADVQLEKSKVTDEGLVKLAPL-------------- 227

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLT 179
                       L Y+N N C   +    K   +  +L+ L   +++I D  +  LKGL+
Sbjct: 228 -----------PLKYINFNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLS 276

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---- 235
            L  L +  C +  EG+ ++     L   EL D+ V   GL  +S L  +  +++S    
Sbjct: 277 KLTHLRIRGCDVTGEGIKHIANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISECRL 336

Query: 236 -----------FTGIS----------DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
                       TG++          D +L     L +L+ LNL +  +TD  L  L  +
Sbjct: 337 ASPEGIAQLGKLTGLTYLGLWETKTNDATLEAFGELVNLEELNLKSTSVTDQSLPVLMKM 396

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           T L  L++ G ++ D     L    NL+S+ + 
Sbjct: 397 TKLKTLNVAGTQLGDDSFLELAKLPNLKSMNVA 429


>gi|329905907|ref|ZP_08274287.1| hypothetical protein IMCC9480_2692 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547418|gb|EGF32242.1| hypothetical protein IMCC9480_2692 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 552

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 136/434 (31%), Positives = 214/434 (49%), Gaps = 61/434 (14%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 66
           + +LT+L+   N+ +T  G+ + A L  L +LDL  CT I   GL +L  +  L  LN++
Sbjct: 35  IRHLTNLNLSNNSKLTDAGLASLAPLTALKQLDLGHCTGIGDTGLAHLGNMASLTQLNVR 94

Query: 67  WCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACL 124
            C  ITD+ ++ L+ L  L  L ++ C ++T +GIA+LK L  LT L+L GC  ++ A +
Sbjct: 95  QCTNITDAGLEQLANLPRLARLNLAGCHRITAAGIAHLKKL-PLTYLDLSGCSGISNAAI 153

Query: 125 DSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL----GFN-------------- 165
             L A   L  LNL+ C    D+G    +++  L+ L+L    GF               
Sbjct: 154 AHLKA-HQLTELNLSDCTGFGDEGFAHLAEV-PLQTLDLSGCTGFTNSGLRFLNKSTLTR 211

Query: 166 -------EITDECLVHLKGLTNLESLNLDSCGIGDEGLVN--LTGLCNLKCLELS---DT 213
                  ++       L G  +L  L+L  C    EGL N  LT L +L    L    +T
Sbjct: 212 LSLRNCTQLDFGATFRLYGAQSLRHLDLAGC----EGLDNTALTALQDLPLEHLDLARNT 267

Query: 214 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAAL 271
            +  +GL  L+ +T+L  +NLS    ++D +L  LA L +L+ L L+  R+ TD GLA L
Sbjct: 268 FLNDTGLESLAEMTSLRYLNLSGGADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQL 327

Query: 272 TSLTGLTHLDLFG-ARITDSGAAYLRNFK-NLRSLEICG-GGLTDAGVKHIKDLSSLTLL 328
           + L  L  L+L     +T++  A L      L+ L++ G   L+DAG+ H+ D+++L  L
Sbjct: 328 SHLP-LETLELVDCVALTNTALARLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKL 386

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSR------ITSAGLRHLKPLKNLRSLTLESC 382
           +LS N N TD      +G   L  L +   R      +T  G+  L  +  L+SL L  C
Sbjct: 387 DLSWNRNFTD------AGAVALRELPLGQLRLNGWIGLTDQGMTALSGMP-LQSLGLIGC 439

Query: 383 -KVTANDIKRLQSR 395
             +  + + +L SR
Sbjct: 440 DNIDGSGLAQLNSR 453



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 197/450 (43%), Gaps = 111/450 (24%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGL----- 57
           +L  +++LT L+ R+   IT  G++  A L  L +L+L  C RI   G+ +LK L     
Sbjct: 81  HLGNMASLTQLNVRQCTNITDAGLEQLANLPRLARLNLAGCHRITAAGIAHLKKLPLTYL 140

Query: 58  ------------------MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 98
                              +L  LN+  C    D     L+ +  L++L +S C+  T+S
Sbjct: 141 DLSGCSGISNAAIAHLKAHQLTELNLSDCTGFGDEGFAHLAEVP-LQTLDLSGCTGFTNS 199

Query: 99  GIAYLK------------------------GLQKLTLLNLEGCP-VTAACLDSLSALGSL 133
           G+ +L                         G Q L  L+L GC  +    L +L  L  L
Sbjct: 200 GLRFLNKSTLTRLSLRNCTQLDFGATFRLYGAQSLRHLDLAGCEGLDNTALTALQDL-PL 258

Query: 134 FYLNLNR-CQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG- 190
            +L+L R   L+D G E  +++ SL+ LNL G  ++TD  L HL  L  L+ L L++C  
Sbjct: 259 EHLDLARNTFLNDTGLESLAEMTSLRYLNLSGGADMTDAALAHLAELPALQHLILNNCRR 318

Query: 191 IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLT-NLESINLS-FTGISDGSLRKL 247
             D GL  L+ L  L+ LEL D   + ++ L  L G    L+ ++LS  T +SD  L  L
Sbjct: 319 TTDAGLAQLSHL-PLETLELVDCVALTNTALARLPGAAATLQKLDLSGCTALSDAGLAHL 377

Query: 248 AGLSSLKSLNLDA-RQITDTGLAAL---------------------TSLTG--------- 276
           A +++L+ L+L   R  TD G  AL                     T+L+G         
Sbjct: 378 ADITTLRKLDLSWNRNFTDAGAVALRELPLGQLRLNGWIGLTDQGMTALSGMPLQSLGLI 437

Query: 277 -----------------LTHLDLFGARI-TDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 317
                            L   DL   R+  D    YLR    L+ L++   G +TDAG+ 
Sbjct: 438 GCDNIDGSGLAQLNSRCLQKFDLSHCRLLNDDAMIYLRRLP-LKELDLSWCGAITDAGLA 496

Query: 318 HIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           H+  L  LT L+L+ N  +TD+ L+ +SG+
Sbjct: 497 HLTGLQ-LTRLDLTYNSGVTDEGLKNLSGM 525



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 35/184 (19%)

Query: 225 GLTNLESINLSFTGISDGSLRKLA-GLSS----LKSLNL-DARQITDTGLAALTSLTGLT 278
           G+ +L+  N +F    D  L ++A GLS+    L +LNL +  ++TD GLA+L  LT L 
Sbjct: 8   GIAHLDLANGNF---KDTDLPRIAVGLSAVIRHLTNLNLSNNSKLTDAGLASLAPLTALK 64

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
            LDL                           G+ D G+ H+ +++SLT LN+ Q  N+TD
Sbjct: 65  QLDLGHCT-----------------------GIGDTGLAHLGNMASLTQLNVRQCTNITD 101

Query: 339 KTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAN-DIKRLQSRD 396
             LE ++ L  L  LN++   RIT+AG+ HLK L  L  L L  C   +N  I  L++  
Sbjct: 102 AGLEQLANLPRLARLNLAGCHRITAAGIAHLKKLP-LTYLDLSGCSGISNAAIAHLKAHQ 160

Query: 397 LPNL 400
           L  L
Sbjct: 161 LTEL 164



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 122/290 (42%), Gaps = 53/290 (18%)

Query: 34  INLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 91
           + L  LDL R T ++  GL +L  +  L  LN+     +TD+ +  L+ L  L+ L ++ 
Sbjct: 256 LPLEHLDLARNTFLNDTGLESLAEMTSLRYLNLSGGADMTDAALAHLAELPALQHLILNN 315

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCE 149
           C + TD+G+A L  L   TL  ++   +T   L  L  A  +L  L+L+ C  LSD G  
Sbjct: 316 CRRTTDAGLAQLSHLPLETLELVDCVALTNTALARLPGAAATLQKLDLSGCTALSDAGLA 375

Query: 150 KFSKIGSLKVLNLGFNE-ITDECLVHLK------------------GLTNLESLNLDSCG 190
             + I +L+ L+L +N   TD   V L+                  G+T L  + L S G
Sbjct: 376 HLADITTLRKLDLSWNRNFTDAGAVALRELPLGQLRLNGWIGLTDQGMTALSGMPLQSLG 435

Query: 191 ------IGDEGLVNLTGLC------------------NLKCLELSDTQVGSSGLRHLSGL 226
                 I   GL  L   C                   L+ L L +  +   G    +GL
Sbjct: 436 LIGCDNIDGSGLAQLNSRCLQKFDLSHCRLLNDDAMIYLRRLPLKELDLSWCGAITDAGL 495

Query: 227 TNLESINLSF------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 270
            +L  + L+       +G++D  L+ L+G+   +   L   Q+T  G  A
Sbjct: 496 AHLTGLQLTRLDLTYNSGVTDEGLKNLSGMPLQQLRVLGCHQVTPNGFWA 545


>gi|46447550|ref|YP_008915.1| hypothetical protein pc1916 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401191|emb|CAF24640.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 310

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 121/222 (54%), Gaps = 8/222 (3%)

Query: 181 LESLN-LDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FT 237
           +E LN L+   + +  L+ L    NLK L L   Q +   GL HL+ LT L+ ++LS   
Sbjct: 78  IEGLNFLNQAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDLSGCW 137

Query: 238 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 295
            ++D  L  L  L  L+ L L+A   +TD GL  LT LT L HLDL     +TD+G A+L
Sbjct: 138 NLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTDAGLAHL 197

Query: 296 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           +    L+ L + C   LTDAG+ H+  L+ L  L LS   NLTD  L  +  LT L  LN
Sbjct: 198 KPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLTALQHLN 257

Query: 355 VSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 394
           + N R +T AGL HL PLK L+ L L  C KVT   + R ++
Sbjct: 258 LRNCRNVTDAGLAHLTPLKALQQLNLRRCDKVTNTGLARFKT 299



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/262 (35%), Positives = 134/262 (51%), Gaps = 31/262 (11%)

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVL 160
           + K ++ L  LN     +T A L +L    +L  L L  CQ L+DDG E  + + +L+ L
Sbjct: 74  FSKKIEGLNFLN--QAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHL 131

Query: 161 NL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGS 217
           +L G   +TD  LVHL  L  L+ L L++C  + D+GLV+LT L  L+ L+LSD   +  
Sbjct: 132 DLSGCWNLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTD 191

Query: 218 SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLT 275
           +GL HL  LT L+ + LS    ++D  L  LA L+ L+ L L D   +TD GL  L  LT
Sbjct: 192 AGLAHLKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLT 251

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            L HL+L             RN +N+          TDAG+ H+  L +L  LNL +   
Sbjct: 252 ALQHLNL-------------RNCRNV----------TDAGLAHLTPLKALQQLNLRRCDK 288

Query: 336 LTDKTLELISGLTGLVSLNVSN 357
           +T+  L     L   ++L + N
Sbjct: 289 VTNTGLARFKTLAASLNLRIIN 310



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 112/233 (48%), Gaps = 33/233 (14%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWC 68
           NL +L      A+T  G++    L  L  LDL  C  +   GLV+L  L+ L+ L +  C
Sbjct: 102 NLKALYLEACQALTDDGLEHLTLLTALQHLDLSGCWNLTDAGLVHLTPLVGLQHLKLNAC 161

Query: 69  NCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDS 126
             +TD  +  L+ LT L+ L +S C  +TD+G+A+LK L  L  L L  C  +T A L  
Sbjct: 162 YNLTDDGLVHLTPLTALQHLDLSDCMNLTDAGLAHLKPLTALQHLGLSCCENLTDAGLAH 221

Query: 127 LSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           L+ L  L YL L+ C  L+DDG                        LVHLK LT L+ LN
Sbjct: 222 LAPLTGLQYLALSDCMNLTDDG------------------------LVHLKPLTALQHLN 257

Query: 186 LDSC-GIGDEGLVNLTGLCNLKCLELSD----TQVGSSGLRHLSGLTNLESIN 233
           L +C  + D GL +LT L  L+ L L      T  G +  + L+   NL  IN
Sbjct: 258 LRNCRNVTDAGLAHLTPLKALQQLNLRRCDKVTNTGLARFKTLAASLNLRIIN 310



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 7/189 (3%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLE 61
           E+L+ L+ L  L       +T  G+     L+ L  L L  C  +   GLV+L  L  L+
Sbjct: 120 EHLTLLTALQHLDLSGCWNLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQ 179

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-V 119
            L++  C  +TD+ +  L  LT L+ L +SC + +TD+G+A+L  L  L  L L  C  +
Sbjct: 180 HLDLSDCMNLTDAGLAHLKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNL 239

Query: 120 TAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG 177
           T   L  L  L +L +LNL  C+ ++D G    + + +L+ LNL   +++T+  L   K 
Sbjct: 240 TDDGLVHLKPLTALQHLNLRNCRNVTDAGLAHLTPLKALQQLNLRRCDKVTNTGLARFKT 299

Query: 178 LTNLESLNL 186
           L    SLNL
Sbjct: 300 LA--ASLNL 306


>gi|290980851|ref|XP_002673145.1| predicted protein [Naegleria gruberi]
 gi|284086726|gb|EFC40401.1| predicted protein [Naegleria gruberi]
          Length = 468

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 154/333 (46%), Gaps = 3/333 (0%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           ++S +  LT+L    NN I  +G K    L NL  L++        G   +  L +L  L
Sbjct: 131 HVSEMKQLTNLYVNANN-IGTEGAKFLRELKNLTYLNISENDIGVEGAKYISELKQLTDL 189

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           +I + N  T+   K +S L  L +L I  + +   G  Y+  L +L +LN+    +    
Sbjct: 190 DISYNNIGTEG-AKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISYSSLGDKG 248

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
              +S +  L +L ++   +  +G +  S++  L  L +  N+I DE   H+  +  L  
Sbjct: 249 AQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTMKELTK 308

Query: 184 LNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           L +     I DEG   L+ L NL  L + D ++G+ G +HLS L NL SI +S+T I D 
Sbjct: 309 LYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTEIGDE 368

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
             + L+ L+ L  L +    I   G   +++L  LT L +    I + GA Y+   K L 
Sbjct: 369 GAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKYISELKQLT 428

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            L+I    +   G  ++  +  LT L +  N +
Sbjct: 429 DLDISYNNIGTEGADYLSQMKQLTHLEIETNSD 461



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 120/239 (50%)

Query: 146 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
           +G +  S++  L  L +  N I  E    L+ L NL  LN+    IG EG   ++ L  L
Sbjct: 127 EGAKHVSEMKQLTNLYVNANNIGTEGAKFLRELKNLTYLNISENDIGVEGAKYISELKQL 186

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
             L++S   +G+ G +++S L  L ++++    I     + ++ L+ L+ LN+    + D
Sbjct: 187 TDLDISYNNIGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISYSSLGD 246

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
            G   ++ +  LTHL +  + I   GA Y+   K L +L I    + D G KHI  +  L
Sbjct: 247 KGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTMKEL 306

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           T L +  N  ++D+  + +S L  L  L + ++RI + G +HL  LKNL S+ +   ++
Sbjct: 307 TKLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTEI 365



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 1/178 (0%)

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           +G  G +H+S +  L ++ ++   I     + L  L +L  LN+    I   G   ++ L
Sbjct: 124 IGVEGAKHVSEMKQLTNLYVNANNIGTEGAKFLRELKNLTYLNISENDIGVEGAKYISEL 183

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
             LT LD+    I   GA Y+ + K L +L+I    +   G K+I +L+ L +LN+S   
Sbjct: 184 KQLTDLDISYNNIGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISY-S 242

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           +L DK  + IS +  L  L +S+S I S G +++  +K L +L +E+  +     K +
Sbjct: 243 SLGDKGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHI 300



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 9/195 (4%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
           +S +  LT+L F  NN I  +G K  + +  L KL ++  R     G     K L +L++
Sbjct: 276 ISEMKQLTNL-FIENNDIDDEGAKHISTMKELTKLYMQGNRLISDEGA----KYLSELKN 330

Query: 63  LNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           L + +   N I +   K LS L NL S+ +S +++ D G  YL  L KLT+L +    + 
Sbjct: 331 LTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTEIGDEGAKYLSELNKLTILQIGYNGIG 390

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
           A     +S L  L  L +    + ++G +  S++  L  L++ +N I  E   +L  +  
Sbjct: 391 AEGAKHISNLKELTMLKIQYNNIGNEGAKYISELKQLTDLDISYNNIGTEGADYLSQMKQ 450

Query: 181 LESLNLDSCGIGDEG 195
           L  L +++    +EG
Sbjct: 451 LTHLEIETNSDAEEG 465


>gi|290984286|ref|XP_002674858.1| predicted protein [Naegleria gruberi]
 gi|284088451|gb|EFC42114.1| predicted protein [Naegleria gruberi]
          Length = 385

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 113/201 (56%), Gaps = 2/201 (0%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           L NL +LN+ SC IG+EG   +  L NL  L++ +  +GS G+++++ L+NL S+N+   
Sbjct: 182 LNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNVYNN 241

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I     +++  L +LK+LN+D   I D G   ++ L  LT L+++   I   GA  +  
Sbjct: 242 NIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKAISK 301

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
             NLR+L I    + + G K I  L++LT LN+S N N+ D+  + I+ L+ L  L + N
Sbjct: 302 LGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNN-NIGDEGAKEITKLSNLTGLKIDN 360

Query: 358 SRITSAGLRHLKP-LKNLRSL 377
           + I     + ++  LKNL+ L
Sbjct: 361 NNIGYEAAKEIRQLLKNLKYL 381



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 99/196 (50%)

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           +  L +L  LN+  C + ++G ++ +K+ +L  L +  N I  E + ++  L+NL SLN+
Sbjct: 179 IGKLNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNV 238

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
            +  IG EG   +  L NLK L + +  +G  G + +S L NL S+N+    I     + 
Sbjct: 239 YNNNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKA 298

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           ++ L +L++L +    I + G   ++ LT LT L++    I D GA  +    NL  L+I
Sbjct: 299 ISKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEITKLSNLTGLKI 358

Query: 307 CGGGLTDAGVKHIKDL 322
               +     K I+ L
Sbjct: 359 DNNNIGYEAAKEIRQL 374



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 2/129 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           ++ LSNLTSL+   NN I  +G K    L+NL  L+++       G   +  L+ L SLN
Sbjct: 227 IAQLSNLTSLNVYNNN-IGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLN 285

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           + + N I     K +S L NL++L I  + + + G   +  L  LT LN+    +     
Sbjct: 286 M-YKNSIGYEGAKAISKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGA 344

Query: 125 DSLSALGSL 133
             ++ L +L
Sbjct: 345 KEITKLSNL 353


>gi|149173873|ref|ZP_01852502.1| hypothetical protein PM8797T_05530 [Planctomyces maris DSM 8797]
 gi|148847403|gb|EDL61737.1| hypothetical protein PM8797T_05530 [Planctomyces maris DSM 8797]
          Length = 473

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 171/385 (44%), Gaps = 25/385 (6%)

Query: 20  NAITAQGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           N   A G   F+   +    D L   TR+ G          L + ++   N  + +  K 
Sbjct: 72  NKPEAGGGYYFSNYFDYCSEDELPMLTRVEG----------LRAFDMFDGNSFSPAGWKQ 121

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT---LLN--LEGCPVTAACLDSLSALGSL 133
           +  ++ L++  +SC  VTD  +  L+GL +L    +LN  ++  PV+   L  LS+  +L
Sbjct: 122 IGQISGLEAFNVSCQYVTDEHLMGLQGLPQLKDLKILNNCMKQSPVSDQGLQVLSSFPAL 181

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             L L+  +++  GCE       L+ L L +  ITDECL  L  L NL+ L +      D
Sbjct: 182 RRLVLHSREINVRGCELIGDCTELRALEL-WGPITDECLKPLGKLKNLKHLIVVGT-FSD 239

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
            GL +L+GL  L  L L   Q+  SGL   +    L     S +   + +L++L  L  L
Sbjct: 240 AGLKHLSGLKQLTRLVLHSDQMTGSGLNSFAEAPELREFGFSGSPAGNATLKQLDQLPGL 299

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
             LNL    + D  L  +  L  L  L L  + ITD G   L   KNLR L +    +T+
Sbjct: 300 AVLNLSTPSVNDAVLQTMPDLPQLEALSLKNSNITDKGLDALVKVKNLRELVLYSTEITN 359

Query: 314 AGVKHIKDLSSLTLLNLSQNCN---LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           AG+  ++ L  L LL L    +   +T K LE    LT L  L V +    +A    L+P
Sbjct: 360 AGLIRLEPLQQLRLLVLGNPGHTELITGKGLE---SLTKLSRLEVLDIDYVNAEQLDLRP 416

Query: 371 LKNLRSLTLESCKVTANDI-KRLQS 394
           L    SL        ++D+ KR Q 
Sbjct: 417 LARCSSLVEVILNFGSDDVRKRWQE 441


>gi|335058613|gb|AEH26502.1| leucine-rich repeat domain protein [uncultured Acidobacteria
           bacterium A11]
          Length = 402

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 128/257 (49%), Gaps = 2/257 (0%)

Query: 15  SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 74
           S++RN+ +    +   A L +L+ LDL        GL  +  L  LE LN+     +TD+
Sbjct: 136 SYKRNDTLVDAWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLT-LTPVTDA 194

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
            ++ L+GLTNL+ L ++ +K T  G  +L  L++L   N    PV  A L  +S +  L 
Sbjct: 195 HLEHLAGLTNLRVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLE 254

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
            L +  C  +D G    +K+ +L+ L +G  + T   +  L  LT L  L+L       E
Sbjct: 255 RLEIVHCHFTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAE 314

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           G+ + + + +L+ L +   Q+   G   ++ L+NLE +  +  G++D +L   A L  L+
Sbjct: 315 GVRHASRIPSLRVLRIH-GQIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQ 373

Query: 255 SLNLDARQITDTGLAAL 271
            L +   +ITD  LA L
Sbjct: 374 RLEIKGNKITDPALARL 390



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 118/248 (47%), Gaps = 2/248 (0%)

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           A LD L+ L  L  L+L    ++  G +    + +L+ LNL    +TD  L HL GLTNL
Sbjct: 146 AWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLEHLAGLTNL 205

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L+L S     EG   L  L  L+      T V  +GL  +S +T LE + +     +D
Sbjct: 206 RVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLEIVHCHFTD 265

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
                LA L +L+ L + +R  T   +  LT+LT L  LDL   + T  G  +     +L
Sbjct: 266 AGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVRHASRIPSL 325

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           R L I  G + D G   I  LS+L +L ++ N  LTD  L+  + L  L  L +  ++IT
Sbjct: 326 RVLRIH-GQIKDEGAASIAQLSNLEIL-VANNAGLTDDALDHFARLPRLQRLEIKGNKIT 383

Query: 362 SAGLRHLK 369
              L  L+
Sbjct: 384 DPALARLQ 391



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 1/252 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           + + D+ +  L+ L +L SL ++ + V   G+  +  L+ L  LNL   PVT A L+ L+
Sbjct: 141 DTLVDAWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLEHLA 200

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L +L  L+L   + + +G     K+  L+  N  F  + D  L  +  +T LE L +  
Sbjct: 201 GLTNLRVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLEIVH 260

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
           C   D G  +L  L NL+ L++       + +  L+ LT L  ++L     +   +R  +
Sbjct: 261 CHFTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVRHAS 320

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
            + SL+ L +   QI D G A++  L+ L  L    A +TD    +      L+ LEI G
Sbjct: 321 RIPSLRVLRIHG-QIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQRLEIKG 379

Query: 309 GGLTDAGVKHIK 320
             +TD  +  ++
Sbjct: 380 NKITDPALARLQ 391



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 135/302 (44%), Gaps = 35/302 (11%)

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           +SL  L  L  ++LN  Q   D   K +            + + D  L  L  L +L SL
Sbjct: 113 ESLHLLDRLTAIDLNDRQSPHDKSYKRN------------DTLVDAWLDRLADLPDLISL 160

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           +L + G+   GL  +  L NL+ L L+ T V  + L HL+GLTNL  ++L+    +    
Sbjct: 161 DLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLEHLAGLTNLRVLSLASAKCTGEGF 220

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           R L  L  L++ N     + D GLA ++++TGL  L++     TD+GA +L    NL  L
Sbjct: 221 RFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLEIVHCHFTDAGAPHLAKLVNLERL 280

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNC----------------------NLTDKTLE 342
           +I     T A ++ +  L+ L  L+L  N                        + D+   
Sbjct: 281 QIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVRHASRIPSLRVLRIHGQIKDEGAA 340

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
            I+ L+ L  L  +N+ +T   L H   L  L+ L ++  K+T   + RLQ + LP L  
Sbjct: 341 SIAQLSNLEILVANNAGLTDDALDHFARLPRLQRLEIKGNKITDPALARLQ-QALPALEV 399

Query: 403 FR 404
            R
Sbjct: 400 VR 401


>gi|406830019|ref|ZP_11089613.1| hypothetical protein SpalD1_00225 [Schlesneria paludicola DSM
           18645]
          Length = 509

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 166/341 (48%), Gaps = 43/341 (12%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I+D+ ++ LS L NLK L I  +++TD+G+  LK      ++  +  P  +  ++++ +L
Sbjct: 154 ISDASIEGLSQLKNLKELWIDGTEITDAGVQSLKEALPNAIVG-KDAPDESQAIETIRSL 212

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--------ECLVHLKGLTNLE 182
           G               G  +   +    V+ +GF    D        E L  +K   +L 
Sbjct: 213 GG--------------GVTRDEAVAGRPVIEVGFGGFLDVGPKTTIEEVLSAVKQFRSLR 258

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           +L L S G    GL+                   + G + +S L NL  + +    I+D 
Sbjct: 259 TLQLGSSGDASHGLL-----------------ATADGWKEISELNNLTRLTIIGIEITDA 301

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L++++ LS L+SL L   +IT+ G+  +  L  LT+L LF  ++TD+G   LR  + L 
Sbjct: 302 GLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRGLQRLD 361

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           +L +    ++D G++ +  L+SLT L++  +  +TD  L+ + GL+ L +L ++++RI+ 
Sbjct: 362 TLSLNNNPISDEGLRQVGALTSLTFLSVP-STEITDNGLKGLRGLSSLKNLCLASTRISD 420

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
            GL+ L  L NL  L L   +VT   +  L  R+L +L S 
Sbjct: 421 DGLKGLIGLNNLEQLDLAGTRVTGTGVGPL--RELESLHSL 459



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 108/200 (54%)

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
           G   TA     +S L +L  L +   +++D G ++ S++  L+ L L   +IT++ +  +
Sbjct: 271 GLLATADGWKEISELNNLTRLTIIGIEITDAGLKEISRLSQLESLRLINLKITNQGMKEI 330

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
             L NL +L L    + D GL  L GL  L  L L++  +   GLR +  LT+L  +++ 
Sbjct: 331 GKLKNLTNLGLFDVQLTDAGLNQLRGLQRLDTLSLNNNPISDEGLRQVGALTSLTFLSVP 390

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
            T I+D  L+ L GLSSLK+L L + +I+D GL  L  L  L  LDL G R+T +G   L
Sbjct: 391 STEITDNGLKGLRGLSSLKNLCLASTRISDDGLKGLIGLNNLEQLDLAGTRVTGTGVGPL 450

Query: 296 RNFKNLRSLEICGGGLTDAG 315
           R  ++L SL +    ++D G
Sbjct: 451 RELESLHSLGLSNTQISDEG 470



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 103/171 (60%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           ITD+ +K +S L+ L+SL++   K+T+ G+  +  L+ LT L L    +T A L+ L  L
Sbjct: 298 ITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRGL 357

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
             L  L+LN   +SD+G  +   + SL  L++   EITD  L  L+GL++L++L L S  
Sbjct: 358 QRLDTLSLNNNPISDEGLRQVGALTSLTFLSVPSTEITDNGLKGLRGLSSLKNLCLASTR 417

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           I D+GL  L GL NL+ L+L+ T+V  +G+  L  L +L S+ LS T ISD
Sbjct: 418 ISDDGLKGLIGLNNLEQLDLAGTRVTGTGVGPLRELESLHSLGLSNTQISD 468



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 118/215 (54%), Gaps = 7/215 (3%)

Query: 84  NLKSLQISCSK-------VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           +L++LQ+  S         T  G   +  L  LT L + G  +T A L  +S L  L  L
Sbjct: 256 SLRTLQLGSSGDASHGLLATADGWKEISELNNLTRLTIIGIEITDAGLKEISRLSQLESL 315

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
            L   ++++ G ++  K+ +L  L L   ++TD  L  L+GL  L++L+L++  I DEGL
Sbjct: 316 RLINLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRGLQRLDTLSLNNNPISDEGL 375

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
             +  L +L  L +  T++  +GL+ L GL++L+++ L+ T ISD  L+ L GL++L+ L
Sbjct: 376 RQVGALTSLTFLSVPSTEITDNGLKGLRGLSSLKNLCLASTRISDDGLKGLIGLNNLEQL 435

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           +L   ++T TG+  L  L  L  L L   +I+D G
Sbjct: 436 DLAGTRVTGTGVGPLRELESLHSLGLSNTQISDEG 470



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/196 (35%), Positives = 102/196 (52%)

Query: 72  TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
           T    K +S L NL  L I   ++TD+G+  +  L +L  L L    +T   +  +  L 
Sbjct: 275 TADGWKEISELNNLTRLTIIGIEITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLK 334

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L L   QL+D G  +   +  L  L+L  N I+DE L  +  LT+L  L++ S  I
Sbjct: 335 NLTNLGLFDVQLTDAGLNQLRGLQRLDTLSLNNNPISDEGLRQVGALTSLTFLSVPSTEI 394

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D GL  L GL +LK L L+ T++   GL+ L GL NLE ++L+ T ++   +  L  L 
Sbjct: 395 TDNGLKGLRGLSSLKNLCLASTRISDDGLKGLIGLNNLEQLDLAGTRVTGTGVGPLRELE 454

Query: 252 SLKSLNLDARQITDTG 267
           SL SL L   QI+D G
Sbjct: 455 SLHSLGLSNTQISDEG 470



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 138/294 (46%), Gaps = 28/294 (9%)

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L S +ALG+L   NLN   ++D    +   +  L +L+LG   I+D  +  L  L NL+ 
Sbjct: 114 LKSFNALGTL---NLNGTDITDADFSELRDLRHLSLLDLGGTRISDASIEGLSQLKNLKE 170

Query: 184 LNLDSCGIGDEGLVNL-TGLCN-LKCLELSDTQVGSSGLRHL-SGLTNLES------INL 234
           L +D   I D G+ +L   L N +   +  D       +R L  G+T  E+      I +
Sbjct: 171 LWIDGTEITDAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEV 230

Query: 235 SFTGISD--------GSLRKLAGLSSLKSLNL----DARQ---ITDTGLAALTSLTGLTH 279
            F G  D          L  +    SL++L L    DA      T  G   ++ L  LT 
Sbjct: 231 GFGGFLDVGPKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADGWKEISELNNLTR 290

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L + G  ITD+G   +     L SL +    +T+ G+K I  L +LT L L  +  LTD 
Sbjct: 291 LTIIGIEITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLF-DVQLTDA 349

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
            L  + GL  L +L+++N+ I+  GLR +  L +L  L++ S ++T N +K L+
Sbjct: 350 GLNQLRGLQRLDTLSLNNNPISDEGLRQVGALTSLTFLSVPSTEITDNGLKGLR 403



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 26/193 (13%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + +S LS L SL    N  IT QGMK    L NL  L L        GL  L+GL +L++
Sbjct: 304 KEISRLSQLESLRLI-NLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRGLQRLDT 362

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++   N I+D  ++ +  LT+L  L +  +++TD+G+  L+GL  L  L          
Sbjct: 363 LSLN-NNPISDEGLRQVGALTSLTFLSVPSTEITDNGLKGLRGLSSLKNL---------- 411

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL S               ++SDDG +    + +L+ L+L    +T   +  L+ L +L 
Sbjct: 412 CLAS--------------TRISDDGLKGLIGLNNLEQLDLAGTRVTGTGVGPLRELESLH 457

Query: 183 SLNLDSCGIGDEG 195
           SL L +  I DEG
Sbjct: 458 SLGLSNTQISDEG 470



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 107/243 (44%), Gaps = 52/243 (21%)

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           L  L L+ T +  +    L  L +L  ++L  T ISD S+  L+ L +LK L +D  +IT
Sbjct: 120 LGTLNLNGTDITDADFSELRDLRHLSLLDLGGTRISDASIEGLSQLKNLKELWIDGTEIT 179

Query: 265 DTGLAALTSL------------------------TGLTHLDLFGAR---------ITDSG 291
           D G+ +L                            G+T  +    R           D G
Sbjct: 180 DAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEVGFGGFLDVG 239

Query: 292 A--------AYLRNFKNLRSLEICGGG-------LTDAGVKHIKDLSSLTLLNLSQNCNL 336
                    + ++ F++LR+L++   G        T  G K I +L++LT L +     +
Sbjct: 240 PKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADGWKEISELNNLTRLTII-GIEI 298

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA---NDIKRLQ 393
           TD  L+ IS L+ L SL + N +IT+ G++ +  LKNL +L L   ++T    N ++ LQ
Sbjct: 299 TDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRGLQ 358

Query: 394 SRD 396
             D
Sbjct: 359 RLD 361


>gi|87309359|ref|ZP_01091495.1| hypothetical protein DSM3645_22189 [Blastopirellula marina DSM
           3645]
 gi|87287998|gb|EAQ79896.1| hypothetical protein DSM3645_22189 [Blastopirellula marina DSM
           3645]
          Length = 351

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 123/254 (48%), Gaps = 1/254 (0%)

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+L    ++D+   + + +  L+ L++    IT E L  L  LT LE L      I
Sbjct: 75  TLRKLSLQDVGMTDESASELAPLTKLQSLDMRGVSITGEALQSLGQLTELERLLFRGQPI 134

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  L  L  L  LK L L DT   + GL HL    +L+ + L  T   D  L  L    
Sbjct: 135 RDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELYLFNTPTVDEELAVLTKFP 194

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           +L  L L    +T +G+A L  +  L  LD+   ++ D+GAA +     L  L +    +
Sbjct: 195 ALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAAEIAKLPKLTDLNLWKTKV 254

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
           TDA +  +  L++L  LNL  N +LTD  L L++ +  L  L++ ++ +T AG+  L   
Sbjct: 255 TDASLPDLAKLTTLERLNLDAN-DLTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKS 313

Query: 372 KNLRSLTLESCKVT 385
           K+L +L +   KVT
Sbjct: 314 KSLETLIVTRTKVT 327



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 130/274 (47%), Gaps = 4/274 (1%)

Query: 45  TRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 101
           +R+    V+ +GL   + L  L+++    +TD     L+ LT L+SL +    +T   + 
Sbjct: 58  SRVVATDVDFRGLGEAVTLRKLSLQDVG-MTDESASELAPLTKLQSLDMRGVSITGEALQ 116

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161
            L  L +L  L   G P+  A L  L+ L  L  L L+    S  G E       LK L 
Sbjct: 117 SLGQLTELERLLFRGQPIRDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELY 176

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
           L      DE L  L     L  L L    +   G+  L  + +L+ L++S+T+V  +G  
Sbjct: 177 LFNTPTVDEELAVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAA 236

Query: 222 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
            ++ L  L  +NL  T ++D SL  LA L++L+ LNLDA  +TD  LA L ++  L  L 
Sbjct: 237 EIAKLPKLTDLNLWKTKVTDASLPDLAKLTTLERLNLDANDLTDANLALLAAMPNLKWLH 296

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L    +TD+G   L   K+L +L +    +TD G
Sbjct: 297 LGSTSVTDAGILELAKSKSLETLIVTRTKVTDDG 330



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 135/300 (45%), Gaps = 11/300 (3%)

Query: 115 EGCPVTAACLDSLSALGSLFY---------LNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           E  P+    ++ L  LG+            ++L+R   +D       +  +L+ L+L   
Sbjct: 25  ETFPLDPPAVERLGRLGAKISRSSSKAPIGMDLSRVVATDVDFRGLGEAVTLRKLSLQDV 84

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
            +TDE    L  LT L+SL++    I  E L +L  L  L+ L      +  + L  L+ 
Sbjct: 85  GMTDESASELAPLTKLQSLDMRGVSITGEALQSLGQLTELERLLFRGQPIRDADLAQLAP 144

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           LT L+ + L  T  S G L  L     LK L L      D  LA LT    L  L L G+
Sbjct: 145 LTKLKVLGLDDTDASAGGLEHLQNAHDLKELYLFNTPTVDEELAVLTKFPALAKLRLRGS 204

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
            +T SG A L    +L  L++    + DAG   I  L  LT LNL +   +TD +L  ++
Sbjct: 205 DVTGSGMAELAKIGSLEDLDVSETKVDDAGAAEIAKLPKLTDLNLWK-TKVTDASLPDLA 263

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPNLVSFR 404
            LT L  LN+  + +T A L  L  + NL+ L L S  VT   I  L +S+ L  L+  R
Sbjct: 264 KLTTLERLNLDANDLTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIVTR 323



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 3/147 (2%)

Query: 3   ENLSGLSNLTSLS-FR-RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           E L+ L+   +L+  R R + +T  GM   A + +L  LD+        G   +  L KL
Sbjct: 185 EELAVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAAEIAKLPKL 244

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             LN+ W   +TD+ +  L+ LT L+ L +  + +TD+ +A L  +  L  L+L    VT
Sbjct: 245 TDLNL-WKTKVTDASLPDLAKLTTLERLNLDANDLTDANLALLAAMPNLKWLHLGSTSVT 303

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDG 147
            A +  L+   SL  L + R +++DDG
Sbjct: 304 DAGILELAKSKSLETLIVTRTKVTDDG 330


>gi|406831735|ref|ZP_11091329.1| hypothetical protein SpalD1_08854 [Schlesneria paludicola DSM
           18645]
          Length = 422

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 165/360 (45%), Gaps = 7/360 (1%)

Query: 14  LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 73
           +SF        + +     L NL  LD+        GL  L  L  L  L +     ITD
Sbjct: 56  VSFNEGPRFNEKHLHLLKSLPNLTSLDVSAIVITEDGLRELGQLKFLRRLVVD-GRSITD 114

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLL-NLEGCPVTAACLDSLS-AL 130
             +  L  L +L  L IS + VTD G+   +  L +L +L +LE     A     +  + 
Sbjct: 115 EGLMELVDLRSLTELTISATSVTDEGLKQFQSFLPQLRILSDLESVRRLAGFGGEIERSD 174

Query: 131 GSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
           G +  ++L N+ Q  D   E    +  L+ L+LG   ITD  L+ +  L  L  L L S 
Sbjct: 175 GRVIRISLHNKPQFGDGDIESLMSLRHLESLDLGGTSITDGALLTVGRLQKLIQLQLPST 234

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
            I D GL  L  L  L  L+LS T++G  GL  +  L  L S+ L  T ++D  L  L  
Sbjct: 235 RITDRGLKALRNLKQLSILDLSRTRIGDVGLDEIKKLP-LTSLMLHDTQVTDFGLLALQD 293

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           L  ++ L L    ITDTGL  L     L+ L L   RITD G   +   + LR L++   
Sbjct: 294 LKEVQFLGLYKCAITDTGLVTLGRFQNLSELCLNSTRITDGGLRNVGQLRKLRILQLGDS 353

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
            +TDAG+  ++ L++L  L L +   +TD ++  +     LV +++  +  T AG+  LK
Sbjct: 354 QITDAGLLELRHLNNLVGLVL-RGTRVTDDSVNTLKRYQNLVHIDLRQTGFTEAGVTELK 412



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 152/321 (47%), Gaps = 31/321 (9%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL--DLERCTRI--HGGLVNLKGLMK 59
            L  L +LT L+     ++T +G+K F   +  +++  DLE   R+   GG +  +   +
Sbjct: 119 ELVDLRSLTELTIS-ATSVTDEGLKQFQSFLPQLRILSDLESVRRLAGFGGEIE-RSDGR 176

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           +  +++       D D++ L  L +L+SL +  + +TD  +  +  LQKL  L L    +
Sbjct: 177 VIRISLHNKPQFGDGDIESLMSLRHLESLDLGGTSITDGALLTVGRLQKLIQLQLPSTRI 236

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
           T   L +L  L  L  L+L+R ++ D G ++  K+  L  L L   ++TD  L+ L+ L 
Sbjct: 237 TDRGLKALRNLKQLSILDLSRTRIGDVGLDEIKKL-PLTSLMLHDTQVTDFGLLALQDLK 295

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            ++ L L  C I D GLV L    NL  L L+ T+                        I
Sbjct: 296 EVQFLGLYKCAITDTGLVTLGRFQNLSELCLNSTR------------------------I 331

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           +DG LR +  L  L+ L L   QITD GL  L  L  L  L L G R+TD     L+ ++
Sbjct: 332 TDGGLRNVGQLRKLRILQLGDSQITDAGLLELRHLNNLVGLVLRGTRVTDDSVNTLKRYQ 391

Query: 300 NLRSLEICGGGLTDAGVKHIK 320
           NL  +++   G T+AGV  +K
Sbjct: 392 NLVHIDLRQTGFTEAGVTELK 412



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 155/346 (44%), Gaps = 57/346 (16%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L  L NL SL +S   +T+ G+  L  L+ L  L ++G  +T   L  L  L SL  L +
Sbjct: 72  LKSLPNLTSLDVSAIVITEDGLRELGQLKFLRRLVVDGRSITDEGLMELVDLRSLTELTI 131

Query: 139 NRCQLSDDGCEKF-SKIGSLKVLN--------LGFN-------------------EITDE 170
           +   ++D+G ++F S +  L++L+         GF                    +  D 
Sbjct: 132 SATSVTDEGLKQFQSFLPQLRILSDLESVRRLAGFGGEIERSDGRVIRISLHNKPQFGDG 191

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
            +  L  L +LESL+L    I D  L+ +  L  L  L+L  T++   GL+ L  L  L 
Sbjct: 192 DIESLMSLRHLESLDLGGTSITDGALLTVGRLQKLIQLQLPSTRITDRGLKALRNLKQLS 251

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
            ++LS T I D  L ++  L  L SL L   Q+TD GL AL  L  +  L L+   ITD+
Sbjct: 252 ILDLSRTRIGDVGLDEIKKLP-LTSLMLHDTQVTDFGLLALQDLKEVQFLGLYKCAITDT 310

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
           G   L  F+NL  L +    +TD G++++  L  L +L L                    
Sbjct: 311 GLVTLGRFQNLSELCLNSTRITDGGLRNVGQLRKLRILQLG------------------- 351

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT---ANDIKRLQ 393
                 +S+IT AGL  L+ L NL  L L   +VT    N +KR Q
Sbjct: 352 ------DSQITDAGLLELRHLNNLVGLVLRGTRVTDDSVNTLKRYQ 391


>gi|290980468|ref|XP_002672954.1| predicted protein [Naegleria gruberi]
 gi|284086534|gb|EFC40210.1| predicted protein [Naegleria gruberi]
          Length = 349

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 7/244 (2%)

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L  ++ +  L  LN+   ++  +G +  S++  L  LN+ +N I DE   ++  +  L S
Sbjct: 96  LKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLIS 155

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           LN+    IGDEG   ++ +  L  L++S   +G  G +++SG+  L S+N+ +T I    
Sbjct: 156 LNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGIEG 215

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
            + ++ +  L SLN+   +I   G+  ++ +  LT L++   R  D GA ++   K L S
Sbjct: 216 AKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQLTS 275

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           L ICG       VK I ++  LT LN+  N  +  +  + IS +  L SLN+  +RI   
Sbjct: 276 LNICG------KVKFISEMKQLTSLNIRGN-RIGVEGAKYISEMKQLTSLNIRGNRIGDQ 328

Query: 364 GLRH 367
           GL H
Sbjct: 329 GLNH 332



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 22/236 (9%)

Query: 170 ECLVHLKGLTNLE---SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           E +  LK +T ++   SLN+    IG EG   ++ +  L  L +S   +G  G +++S +
Sbjct: 91  EAIEQLKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEM 150

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
             L S+N+    I D   + ++ +  L SL++    I D G   ++ +  LT L+++   
Sbjct: 151 KQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTL 210

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN------------- 333
           I   GA ++   K L SL I    +   GVK+I ++  LT LN+S N             
Sbjct: 211 IGIEGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEM 270

Query: 334 -----CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
                 N+  K ++ IS +  L SLN+  +RI   G +++  +K L SL +   ++
Sbjct: 271 KQLTSLNICGK-VKFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNRI 325



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 136/285 (47%), Gaps = 13/285 (4%)

Query: 12  TSLSFRRNNAITAQGMKAF--AGLINLVKLDLERCTRIHGGLVNLK---GLMKLESLNIK 66
           + L  +  N IT + ++ F  +  +N + +D++  T +   +  LK    + +L SLNI+
Sbjct: 53  SKLVIQFKNNITEKRVELFMKSQFMNSI-VDVKFSTNLLEAIEQLKFVTEMKQLTSLNIR 111

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
             N I     K +S +  L SL IS + + D G  Y+  +++L  LN+    +       
Sbjct: 112 -GNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLISLNIRENEIGDEGAKY 170

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           +S +  L  L+++   + D+G +  S +  L  LN+ +  I  E    +  +  L SLN+
Sbjct: 171 ISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGIEGAKFISEMKQLTSLNI 230

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
               IG EG+  ++ +  L  L +S  + G  G + +S +  L S+N+       G ++ 
Sbjct: 231 SENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQLTSLNIC------GKVKF 284

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           ++ +  L SLN+   +I   G   ++ +  LT L++ G RI D G
Sbjct: 285 ISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNRIGDQG 329



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 113/263 (42%), Gaps = 49/263 (18%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
             +K ++ +  L SL I  +++   G  Y+  +++LT LN+    +       +S +  L
Sbjct: 94  EQLKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQL 153

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             LN+   ++ D+G +  S++  L  L++ +N I DE   ++ G+  L SLN+    IG 
Sbjct: 154 ISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGI 213

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD------------ 241
           EG   ++ +  L  L +S+ ++G  G++++S +  L S+N+S+    D            
Sbjct: 214 EGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQL 273

Query: 242 ------------GSLRKLAGLS------------------SLKSLNLDARQITDTGLAAL 271
                         +++L  L+                   L SLN+   +I D GL   
Sbjct: 274 TSLNICGKVKFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNRIGDQGLNHE 333

Query: 272 TSLTGLTHLDLFGARITDSGAAY 294
            SL       L+GA   +   +Y
Sbjct: 334 NSL-------LWGANKFNKSESY 349



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 20/240 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           ++ +  LTSL+ R  N I  +G K  + +  L  L++        G   +  + +L SLN
Sbjct: 99  VTEMKQLTSLNIR-GNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLISLN 157

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I+  N I D   K +S +  L SL IS + + D G  Y+ G+++LT LN+    +     
Sbjct: 158 IR-ENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGIEGA 216

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTNL 181
             +S +  L  LN++  ++  +G +  S++  L  LN+ +N   DE    +  +K LT+L
Sbjct: 217 KFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQLTSL 276

Query: 182 E---------------SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
                           SLN+    IG EG   ++ +  L  L +   ++G  GL H + L
Sbjct: 277 NICGKVKFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNRIGDQGLNHENSL 336



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 1/150 (0%)

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L+ +  +  L SLN+   +I   G   ++ +  LT L++    I D GA Y+   K L 
Sbjct: 95  QLKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLI 154

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SL I    + D G K+I ++  LT L++S N  + D+  + ISG+  L SLN+  + I  
Sbjct: 155 SLNIRENEIGDEGAKYISEMKQLTSLDISYNI-IGDEGAKYISGMKQLTSLNIYYTLIGI 213

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            G + +  +K L SL +   ++    +K +
Sbjct: 214 EGAKFISEMKQLTSLNISENEIGIEGVKYI 243


>gi|449464060|ref|XP_004149747.1| PREDICTED: uncharacterized protein LOC101203036 [Cucumis sativus]
 gi|449505065|ref|XP_004162366.1| PREDICTED: uncharacterized protein LOC101225004 [Cucumis sativus]
          Length = 586

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 191/442 (43%), Gaps = 65/442 (14%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 77
            NA+ ++ M        L  L++  C R+   G+  + G+  L  LN+  C  +TD+ ++
Sbjct: 71  ENAVDSEWMAYLGSFRYLQSLNVSNCHRLSSSGVWTISGMTTLRELNVSRCLKVTDAGIR 130

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
            L  +  L+ L I+ + +T  G+  L  L+ L  L+L G PVT   L SL  L  L YL+
Sbjct: 131 HLLSIPTLEKLCIAETGITAHGVTLLSSLKTLVFLDLGGLPVTDQALSSLQVLTKLQYLD 190

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-------G 190
           L   ++S+ G +       L  LN+ +  +T         L +LE LN+ +C       G
Sbjct: 191 LWGSKISNSGSDVLQMFPKLSFLNIAWTSVTK-----FPNLPHLECLNMSNCIIDSTLKG 245

Query: 191 IG--------------------DEGLVNLTGLCNL-------------------KCLELS 211
           +G                    D G V +  L  L                   + L+LS
Sbjct: 246 LGAKVPPRKLIASGATFSNETEDLGFVAMDALYYLDFSNASLHRFCFLSRMKAVEHLDLS 305

Query: 212 DTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLA 269
            T +G S +  ++ +  NL+ +NLS T +S   +  LAG +S+L++L+L    + D  L+
Sbjct: 306 STTIGDSSVELIASVGENLKYLNLSCTAVSSSGIGSLAGKVSNLETLSLSHTMVDDVALS 365

Query: 270 ALTSLTGLTHLDL----FGARITDSGAAYLRNF-----KNLRSLEICGGGLTDAGVKHIK 320
            +  +  L  +DL        I  S    ++ F     +NL  LE+     T    + ++
Sbjct: 366 YMNMMPSLKCIDLSETDIKGYIHLSAPETVKVFSLTELQNLDCLEMLNLEHTHVDDESLR 425

Query: 321 DLSSLTLLN--LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
            LS    L+  + ++ + TD  L  +S L  L +L++ ++ +T+      KP+  L+ + 
Sbjct: 426 PLSRFRKLSHLMLRSPSFTDTVLSYLSILPNLKTLSIRDAVLTNQAFDTFKPVATLQKID 485

Query: 379 LESCKVTANDIKRLQSRDLPNL 400
           L  C +   D   +  R  P +
Sbjct: 486 LRGCWLLTEDGLSVFHRRFPQI 507


>gi|329906145|ref|ZP_08274368.1| hypothetical protein IMCC9480_2835 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547327|gb|EGF32161.1| hypothetical protein IMCC9480_2835 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 518

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 184/415 (44%), Gaps = 81/415 (19%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGLMKLESL 63
           L+ +  L  L+ +R   IT   ++A A   NL  L++  R       L +L+ L++L  L
Sbjct: 110 LAQMPQLRHLTLQRCQGITPAALEAVANQANLQHLEISLRRNMTDDELASLRPLLQLRHL 169

Query: 64  NI------------KW-------------CNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 97
           ++             W             C  I ++++  L+ L +L+ L +S C ++TD
Sbjct: 170 SLNGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLSSCQQLTD 229

Query: 98  SGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 156
           +G+A+L     L  L+L GC  VT A L  LSAL SL +L+++ C+L             
Sbjct: 230 AGVAHLPLASTLQHLDLSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVTGA--TLGDFAV 287

Query: 157 LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
           +K LN GF    +D  L  + G+ +L+ L +  C       V LT      CL       
Sbjct: 288 MKSLNAGFCRRFSDAGLAAVAGMHDLQQLEITHC-------VALTRDALATCL------- 333

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL 274
                     LT L+++N S T +SD  L+ L    SL+ L L   R +T+ GLA L + 
Sbjct: 334 --------PQLTQLQTLNASGTPLSDAPLQALFAQGSLQQLVLQHCRALTEPGLAQLATS 385

Query: 275 TGLTHLDLFGAR--ITDSGAAY---------------------LRNFKNL---RSLEICG 308
             L  LDL   R  + D+  A                      LR+F++L   ++L + G
Sbjct: 386 PALVSLDLRSCRGVVGDALPALGRQTALETLDLSRCSGVTGDDLRHFQSLSKLQTLRLVG 445

Query: 309 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            G + DAG+ H++ L +L  L+L+    LTD  L  I+    L  L++ N  + S
Sbjct: 446 CGRINDAGLAHLQALPALKTLDLTDCGYLTDGALRRIAHFPALEKLHIRNCHLIS 500



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 196/393 (49%), Gaps = 40/393 (10%)

Query: 38  KLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-V 95
           +L+L   TR+   GL +L GL+ LE ++++ C  +TD+ +  L+ L  L +L+++  +  
Sbjct: 46  RLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQRDA 105

Query: 96  TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSDD-------- 146
           + + +A +  L+ LTL   +G  +T A L++++   +L +L ++ R  ++DD        
Sbjct: 106 SGAALAQMPQLRHLTLQRCQG--ITPAALEAVANQANLQHLEISLRRNMTDDELASLRPL 163

Query: 147 -----------------GCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDS 188
                            G E + ++ +L+VL+L     I +  LVHL  L +L+ LNL S
Sbjct: 164 LQLRHLSLNGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLSS 223

Query: 189 C-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
           C  + D G+ +L     L+ L+LS   QV  +GLR LS L +L+ +++    +  G+   
Sbjct: 224 CQQLTDAGVAHLPLASTLQHLDLSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVTGA--T 281

Query: 247 LAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG--ARITDSGAAYLRNFKNLRS 303
           L   + +KSLN    R+ +D GLAA+  +  L  L++    A   D+ A  L     L++
Sbjct: 282 LGDFAVMKSLNAGFCRRFSDAGLAAVAGMHDLQQLEITHCVALTRDALATCLPQLTQLQT 341

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITS 362
           L   G  L+DA ++ +    SL  L L     LT+  L  ++    LVSL++ + R +  
Sbjct: 342 LNASGTPLSDAPLQALFAQGSLQQLVLQHCRALTEPGLAQLATSPALVSLDLRSCRGVVG 401

Query: 363 AGLRHLKPLKNLRSLTLESCK-VTANDIKRLQS 394
             L  L     L +L L  C  VT +D++  QS
Sbjct: 402 DALPALGRQTALETLDLSRCSGVTGDDLRHFQS 434



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 34/251 (13%)

Query: 156 SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 213
           S++ L L G   +TD  L HL GL +LE ++L SC  + D GL  L  L  L  LEL++ 
Sbjct: 43  SVRRLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQ 102

Query: 214 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAAL 271
           +  S     L+ +  L  + L    GI+  +L  +A  ++L+ L +  R+ +TD  LA+L
Sbjct: 103 RDASGAA--LAQMPQLRHLTLQRCQGITPAALEAVANQANLQHLEISLRRNMTDDELASL 160

Query: 272 TSLTGLTHLDLFGAR--------------------------ITDSGAAYLRNFKNLRSLE 305
             L  L HL L G+                           I ++   +L    +L+ L 
Sbjct: 161 RPLLQLRHLSLNGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLN 220

Query: 306 ICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSA 363
           +     LTDAGV H+   S+L  L+LS    +TD  L  +S L  L  L+V + R +T A
Sbjct: 221 LSSCQQLTDAGVAHLPLASTLQHLDLSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVTGA 280

Query: 364 GLRHLKPLKNL 374
            L     +K+L
Sbjct: 281 TLGDFAVMKSL 291


>gi|325109499|ref|YP_004270567.1| hypothetical protein Plabr_2946 [Planctomyces brasiliensis DSM
           5305]
 gi|324969767|gb|ADY60545.1| leucine-rich repeat cysteine-containing subtype [Planctomyces
           brasiliensis DSM 5305]
          Length = 381

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 138/261 (52%), Gaps = 6/261 (2%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           ++   ++ L+ L  L+SL +  S   D  +  +    +L  L+L  CPV+ A L  L  L
Sbjct: 86  VSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENLDLRECPVSNAGLAHLVGL 145

Query: 131 GSLFYLNLN----RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
             L  L L+       + D G E  +K+  LKVL L F  I+ + L  LK LT+L  L L
Sbjct: 146 EKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRELYL 205

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSL 244
            S  +GDE L  L+    L+ L +S  +Q+   G++ +S L+ LE +++S  + +S+  +
Sbjct: 206 ASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDDI 265

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
             L+ L+ L  LNL    I+D G+  L  LT LT L+L   +++D+G + L+  K L+ L
Sbjct: 266 SSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLDNTQLSDAGLSTLKEMKELKFL 325

Query: 305 EICGGGLTDAGVKHIKDLSSL 325
            +    +++AG+  + +L SL
Sbjct: 326 HLGSTQISNAGLPQLSELKSL 346



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 7/240 (2%)

Query: 153 KIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
           K G  +++ + F   E++ E L  L  L  L SL L     GD+ L+ +     L+ L+L
Sbjct: 70  KNGDDQIIEVDFIGKEVSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENLDL 129

Query: 211 SDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            +  V ++GL HL GL  L+++ LS     T + DG +  +A L  LK L LD   I+  
Sbjct: 130 RECPVSNAGLAHLVGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGD 189

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSL 325
           GL  L  LT L  L L    + D     L  F  LR L +     L+  G++ I  LS L
Sbjct: 190 GLQQLKPLTDLRELYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKL 249

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
             L++S++ +L++  +  +S LT L  LN+    I+ AG+ HL PL  L  L L++ +++
Sbjct: 250 EELDVSEDSSLSNDDISSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLDNTQLS 309



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 142/290 (48%), Gaps = 8/290 (2%)

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
           G  V+   L++L+ L  L  L L      DD      K   L+ L+L    +++  L HL
Sbjct: 83  GKEVSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENLDLRECPVSNAGLAHL 142

Query: 176 KGLTNLESLNLD----SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
            GL  L++L L     +  + D G+ ++  L  LK L L    +   GL+ L  LT+L  
Sbjct: 143 VGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRE 202

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLF-GARITD 289
           + L+ T + D  L+ L+    L+ L +    Q++  G+  ++ L+ L  LD+   + +++
Sbjct: 203 LYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSN 262

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + L     L  L +    ++DAGV+H+  L+ LT LNL  N  L+D  L  +  +  
Sbjct: 263 DDISSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLD-NTQLSDAGLSTLKEMKE 321

Query: 350 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
           L  L++ +++I++AGL  L  LK+L  L +    V    + +LQ  +LP+
Sbjct: 322 LKFLHLGSTQISNAGLPQLSELKSLDKLVVTRTAVNQEGVDKLQP-ELPD 370



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 119/274 (43%), Gaps = 30/274 (10%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E L+ L  L SL  R +NA     + A      L  LDL  C   + GL +L GL KL++
Sbjct: 92  EALAKLPKLRSLLLRESNA-GDDALIAVGKCSQLENLDLRECPVSNAGLAHLVGLEKLKA 150

Query: 63  LNIKW---CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L +        + D  M+ ++ L  LK L +    ++  G+  LK L  L  L L    V
Sbjct: 151 LRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRELYLASTLV 210

Query: 120 TAACLDSLSALGSLFYLNLNR--------------------------CQLSDDGCEKFSK 153
               L +LS    L  L +++                            LS+D     SK
Sbjct: 211 GDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDDISSLSK 270

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
           +  L  LNL    I+D  + HL  LT L  LNLD+  + D GL  L  +  LK L L  T
Sbjct: 271 LTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLDNTQLSDAGLSTLKEMKELKFLHLGST 330

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
           Q+ ++GL  LS L +L+ + ++ T ++   + KL
Sbjct: 331 QISNAGLPQLSELKSLDKLVVTRTAVNQEGVDKL 364


>gi|290994342|ref|XP_002679791.1| predicted protein [Naegleria gruberi]
 gi|284093409|gb|EFC47047.1| predicted protein [Naegleria gruberi]
          Length = 300

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 146/276 (52%), Gaps = 2/276 (0%)

Query: 84  NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 143
           NL SL IS + + + G  Y+  L  LT+L++ G  + A   + +S +  +  L++    L
Sbjct: 4   NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
             +G +  S++  L  L +  N I +E    + GL  L  L++    IGD G  +L+ L 
Sbjct: 64  GKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSELK 123

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
            L  L + +  +G  G++H+  +  L  +++S   I       ++G++ L+ L++++  I
Sbjct: 124 QLTRLNIGENNIGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCNI 183

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
              G   ++ +  LT L++   +  D GA ++ + K L +LE+    ++D G K + ++S
Sbjct: 184 DPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLELFNCDISDIGAKCVSEMS 243

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
            LT L++ +N NL+D+ +  +S +  L+ L+VS+S+
Sbjct: 244 KLTNLDIGEN-NLSDEGVRAVSNMK-LMILSVSSSK 277



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 139/290 (47%), Gaps = 26/290 (8%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 69
           NLTSL+  RN  I  +G K  + L NL  LD+     +  G  ++  + ++ +L++   N
Sbjct: 4   NLTSLNISRN-WIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVG-LN 61

Query: 70  CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
            +     K +S +  L +L+I+ + + + G  ++ GL++LT L                 
Sbjct: 62  NLGKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTEL----------------- 104

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
             S+ + N+      D G +  S++  L  LN+G N I DE + H+  +  L  L++ + 
Sbjct: 105 --SIHFNNI-----GDVGTKHLSELKQLTRLNIGENNIGDEGVKHILEMKQLTDLDISNN 157

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
            I  +G   ++G+  L+ L+++   +   G + +S +  L  +N+++    D   + ++ 
Sbjct: 158 NIRHKGSEYISGMNQLRILDINSCNIDPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISD 217

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           +  L +L L    I+D G   ++ ++ LT+LD+    ++D G   + N K
Sbjct: 218 MKQLTTLELFNCDISDIGAKCVSEMSKLTNLDIGENNLSDEGVRAVSNMK 267



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 115/254 (45%), Gaps = 25/254 (9%)

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  LN++R  + ++G +  S++ +L +L++  N+I      H+  +  + +L++    +
Sbjct: 4   NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
           G EG   ++ +  L  LE+++  +   G + +SGL  L  +++ F  I D   + L+ L 
Sbjct: 64  GKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSELK 123

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  LN+    I D G+  +  +  LT LD+    I   G+ Y+     LR L+I    +
Sbjct: 124 QLTRLNIGENNIGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCNI 183

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
              G + I ++  LT LN++ N                         +    G + +  +
Sbjct: 184 DPIGAQKISEMKQLTDLNIAWN-------------------------QFGDEGAKFISDM 218

Query: 372 KNLRSLTLESCKVT 385
           K L +L L +C ++
Sbjct: 219 KQLTTLELFNCDIS 232



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 1/141 (0%)

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           +L SLN+    I + G   ++ L  LT LD+ G  I  +GA ++   K + +L +    L
Sbjct: 4   NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
              G K+I ++  LT L ++ N N+ ++  + ISGL  L  L++  + I   G +HL  L
Sbjct: 64  GKEGTKYISEMKQLTNLEINNN-NIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSEL 122

Query: 372 KNLRSLTLESCKVTANDIKRL 392
           K L  L +    +    +K +
Sbjct: 123 KQLTRLNIGENNIGDEGVKHI 143



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 37/211 (17%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +SGL  LT LS   NN I   G K  + L  L +L++                       
Sbjct: 95  ISGLKQLTELSIHFNN-IGDVGTKHLSELKQLTRLNIGE--------------------- 132

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N I D  +K +  +  L  L IS + +   G  Y+ G+ +L +L++  C +     
Sbjct: 133 ----NNIGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCNIDPIGA 188

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITD---ECLVHLKGLTN 180
             +S +  L  LN+   Q  D+G +  S +  L  L L FN +I+D   +C+  +  LTN
Sbjct: 189 QKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLEL-FNCDISDIGAKCVSEMSKLTN 247

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
           L+   +    + DEG   +  + N+K + LS
Sbjct: 248 LD---IGENNLSDEG---VRAVSNMKLMILS 272


>gi|46446627|ref|YP_007992.1| hypothetical protein pc0993 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400268|emb|CAF23717.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 478

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 167 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 224
           +TD     LK   NL+ L  ++C  + D+GL +L  L  L+ L L    +V  +GL HL+
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGLAHLT 297

Query: 225 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 282
            L  L+ ++LSF   I+D  L  L  L++L+ L L     +T  GLA LT L  L +LDL
Sbjct: 298 SLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLDL 357

Query: 283 -FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
            +   +TD G A+LR    L+ L++     LTDAG+ H+  L +LT L L     LTD  
Sbjct: 358 SYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKLIWCHKLTDAG 417

Query: 341 LELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 383
           L  +  L  L  LN+S+ R +T AGL HL PL  L+ L L  C+
Sbjct: 418 LAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCR 461



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 131/228 (57%), Gaps = 8/228 (3%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL 112
           LK    L+ L  + C  +TD  +  L+ LT L+ L +  C KVTD+G+A+L  L+ L  L
Sbjct: 246 LKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGLAHLTSLRALQYL 305

Query: 113 NLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITD 169
           +L  C  +T A L  L+ L +L  L L +C+ L+  G    + + +L+ L+L + + +TD
Sbjct: 306 DLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLDLSYWDNLTD 365

Query: 170 ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLT 227
           + L HL+ L  L+ L+L +C  + D GL +LT L  L  L+L    ++  +GL HL  L 
Sbjct: 366 DGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKLIWCHKLTDAGLAHLRPLV 425

Query: 228 NLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS 273
            L+ +NLS    ++D  L  L  L++L+ LNL D R++TDTGLA+  +
Sbjct: 426 ALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRKLTDTGLASFKA 473



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 131/258 (50%), Gaps = 30/258 (11%)

Query: 119 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 176
           +T A   +L    +L  L    CQ L+DDG    + + +L+ L L G +++TD  L HL 
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGLAHLT 297

Query: 177 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 234
            L  L+ L+L  C  I D GL +LT L  L+ L L   + +  +GL HL+ L  L+ ++L
Sbjct: 298 SLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLDL 357

Query: 235 SFT-GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
           S+   ++D  L  L  L +L+ L+L +  ++TD GLA LT L  LTHL L          
Sbjct: 358 SYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKL---------- 407

Query: 293 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
                        I    LTDAG+ H++ L +L  LNLS   NLTD  L  +  LT L  
Sbjct: 408 -------------IWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQY 454

Query: 353 LNVSNSR-ITSAGLRHLK 369
           LN+S+ R +T  GL   K
Sbjct: 455 LNLSDCRKLTDTGLASFK 472



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 112/209 (53%), Gaps = 6/209 (2%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWC 68
           NL  L+F    A+T  G+   A L  L  L L  C ++   GL +L  L  L+ L++ +C
Sbjct: 251 NLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGLAHLTSLRALQYLDLSFC 310

Query: 69  NCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDS 126
             ITD+ +  L+ LT L+ L +  C  +T +G+A+L  L+ L  L+L     +T   L  
Sbjct: 311 RNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLDLSYWDNLTDDGLAH 370

Query: 127 LSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESL 184
           L  L +L +L+L  C +L+D G    + + +L  L L + +++TD  L HL+ L  L+ L
Sbjct: 371 LRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKLIWCHKLTDAGLAHLRPLVALKHL 430

Query: 185 NLDSC-GIGDEGLVNLTGLCNLKCLELSD 212
           NL SC  + D GL +L  L  L+ L LSD
Sbjct: 431 NLSSCRNLTDAGLAHLIPLTALQYLNLSD 459



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L+ L  L  L     + +T  G+     L+ L  LDL  C  +   GL +L  L+ L  
Sbjct: 345 HLTPLKALQYLDLSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTH 404

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           L + WC+ +TD+ +  L  L  LK L + SC  +TD+G+A+L  L  L  LNL  C
Sbjct: 405 LKLIWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDC 460



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 2/104 (1%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           +L  L  L  L       +T  G+     L+ L  L L  C ++   GL +L+ L+ L+ 
Sbjct: 370 HLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKLIWCHKLTDAGLAHLRPLVALKH 429

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKG 105
           LN+  C  +TD+ +  L  LT L+ L +S C K+TD+G+A  K 
Sbjct: 430 LNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRKLTDTGLASFKA 473


>gi|290983896|ref|XP_002674664.1| predicted protein [Naegleria gruberi]
 gi|284088255|gb|EFC41920.1| predicted protein [Naegleria gruberi]
          Length = 374

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 162/338 (47%), Gaps = 7/338 (2%)

Query: 66  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 125
           +W N  T + +  +  LT+L+  +I+  +++     YL  L +L  L++    +T + ++
Sbjct: 19  RWGNSETYNKLIMMKSLTDLRISKINFVEMS----KYLISLDQLISLDISKSLITDSIVE 74

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
            +S L  L YLN++   + + G    SK+  L  L +  N     CL ++  +  L SLN
Sbjct: 75  PISKLKQLTYLNVSDNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNMRKLTSLN 134

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           ++   IG+    ++  +  L  L +++  +G  G  H+  L +L S+ ++  GI +  ++
Sbjct: 135 INGNDIGNIAFEDIIKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNGIHEEGVK 194

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
            +  L  +  L++        G   +  +  LT L++   RI D GA YL     L  L 
Sbjct: 195 FINELPQVTDLDIFGISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLSGLTKLTKLS 254

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
           I    ++  GVK I++L  LT L++S N N+  +  + +SGL  L  L++  + +   G 
Sbjct: 255 ISSNSISAIGVKFIRELKLLTFLDISIN-NIGQQGSQYVSGLDKLAHLSIHRNNLGDEGA 313

Query: 366 RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
           RH+  +K L +L +    ++  D   L   DL  L SF
Sbjct: 314 RHIGDMKWLTNLDINCNSIS--DEGALYFSDLKQLTSF 349



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 140/291 (48%), Gaps = 3/291 (1%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           ITDS ++P+S L  L  L +S + + + G+ ++  L++LT L +        CL  ++ +
Sbjct: 68  ITDSIVEPISKLKQLTYLNVSDNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNM 127

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
             L  LN+N   + +   E   K+  L  LN+    I D+   H+  L +L SL +   G
Sbjct: 128 RKLTSLNINGNDIGNIAFEDIIKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNG 187

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           I +EG+  +  L  +  L++     G  G +++  +  L  +N++   I D     L+GL
Sbjct: 188 IHEEGVKFINELPQVTDLDIFGISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLSGL 247

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
           + L  L++ +  I+  G+  +  L  LT LD+    I   G+ Y+     L  L I    
Sbjct: 248 TKLTKLSISSNSISAIGVKFIRELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHRNN 307

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRI 360
           L D G +HI D+  LT  NL  NCN ++D+     S L  L S ++S + I
Sbjct: 308 LGDEGARHIGDMKWLT--NLDINCNSISDEGALYFSDLKQLTSFDISGNNI 356



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 144/330 (43%), Gaps = 27/330 (8%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           + +LT L   + N +     K    L  L+ LD+ +       +  +  L +L  LN+  
Sbjct: 32  MKSLTDLRISKINFVEMS--KYLISLDQLISLDISKSLITDSIVEPISKLKQLTYLNVS- 88

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N I +  +  +S L  L +L IS ++   + + Y+  ++KLT LN+ G  +     + +
Sbjct: 89  DNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNMRKLTSLNINGNDIGNIAFEDI 148

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV-------------- 173
             +  L  LN+N   + D G     K+  L  L +  N I +E +               
Sbjct: 149 IKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNGIHEEGVKFINELPQVTDLDIF 208

Query: 174 ----------HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
                     ++  +  L  LN++SC IGDEG   L+GL  L  L +S   + + G++ +
Sbjct: 209 GISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLSGLTKLTKLSISSNSISAIGVKFI 268

Query: 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
             L  L  +++S   I     + ++GL  L  L++    + D G   +  +  LT+LD+ 
Sbjct: 269 RELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHRNNLGDEGARHIGDMKWLTNLDIN 328

Query: 284 GARITDSGAAYLRNFKNLRSLEICGGGLTD 313
              I+D GA Y  + K L S +I G  + D
Sbjct: 329 CNSISDEGALYFSDLKQLTSFDISGNNICD 358



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 2/292 (0%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           + E +S L  LT L+   +N+I   G+   + L  L  L + +       L  +  + KL
Sbjct: 72  IVEPISKLKQLTYLNVS-DNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNMRKL 130

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            SLNI   N I +   + +  +  L SL ++   + D G  ++  L+ LT L +    + 
Sbjct: 131 TSLNIN-GNDIGNIAFEDIIKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNGIH 189

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
              +  ++ L  +  L++        G +   ++  L  LN+    I DE   +L GLT 
Sbjct: 190 EEGVKFINELPQVTDLDIFGISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLSGLTK 249

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  L++ S  I   G+  +  L  L  L++S   +G  G +++SGL  L  +++    + 
Sbjct: 250 LTKLSISSNSISAIGVKFIRELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHRNNLG 309

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
           D   R +  +  L +L+++   I+D G    + L  LT  D+ G  I D  A
Sbjct: 310 DEGARHIGDMKWLTNLDINCNSISDEGALYFSDLKQLTSFDISGNNICDEVA 361


>gi|297742329|emb|CBI34478.3| unnamed protein product [Vitis vinifera]
          Length = 588

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 192/459 (41%), Gaps = 114/459 (24%)

Query: 14  LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 72
           +  R  +++ A+ M    G   L  L++  C RI +  L  + G+  L+ L++  C   +
Sbjct: 73  IDLRGESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRCIKFS 132

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           DS ++ L  +  L+ L IS + VT  GI  +  L  L++L+L G PVT   L SL  L  
Sbjct: 133 DSGLRHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTK 192

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI- 191
           L YL+L   ++S+ G         L  LN+ + ++T      L  L ++  LN+ +C I 
Sbjct: 193 LQYLDLWGSKISNKGAADLVVFPKLSFLNIAWTDVTT-----LPDLPSIACLNMSNCTIH 247

Query: 192 ------GDEGLV---------------------------------NLTGLCNLKC----- 207
                 G + L+                                 +L   C L C     
Sbjct: 248 SMFEGEGAKALLEKITVSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCFLSCMKALE 307

Query: 208 -LELSDTQVG-------------------------SSGLRHLSG-LTNLESINLSFTGIS 240
            L+LS T +G                         S+G+  L+G + NLE+I+LS T + 
Sbjct: 308 HLDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVD 367

Query: 241 DGSLRKLAGLSSLKSLNL-----------DARQITDTGLAALTSLTGLTHLDLFGARITD 289
           D ++  ++ +SS+K +NL           D+  + +  LAAL SL  +  LDL G ++ D
Sbjct: 368 DVAISYISMMSSVKIINLSNTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVED 427

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
                L  F+ L  L + G  LTD              L+L Q           +S L  
Sbjct: 428 EALCPLLRFQQLNELSLKGTRLTD--------------LSLYQ-----------LSSLPN 462

Query: 350 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           L++L++ ++ +T+ GL   KP   L+ L L  C +   D
Sbjct: 463 LINLSIGDTVLTNGGLNSFKPPATLKLLDLRGCWLLTED 501



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 173/411 (42%), Gaps = 92/411 (22%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESL 63
           + G   L SL+      IT   +    G+ NL +LDL RC +    GL +L  +  L+ L
Sbjct: 89  IGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKL 148

Query: 64  NIKWCNC-----------------------ITDSDMKPLSGLTNLKSLQISCSKVTDSGI 100
            I                            +TD  +  L  LT L+ L +  SK+++ G 
Sbjct: 149 CISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYLDLWGSKISNKGA 208

Query: 101 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD----DGCEK------ 150
           A L    KL+ LN+    VT     +L  L S+  LN++ C +      +G +       
Sbjct: 209 ADLVVFPKLSFLNIAWTDVT-----TLPDLPSIACLNMSNCTIHSMFEGEGAKALLEKIT 263

Query: 151 --------------FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
                         F +   L  L++  + +   C   L  +  LE L+L    +GD+ +
Sbjct: 264 VSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCF--LSCMKALEHLDLSFTMMGDDSI 321

Query: 197 VNLTGL-CNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLK 254
             +  +  NL+ L LS+T+V S+G+  L+G + NLE+I+LS T + D ++  ++ +SS+K
Sbjct: 322 QLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSVK 381

Query: 255 SLNL-----------DARQITDTGLAALTSLTGLTHLDLFG------------------- 284
            +NL           D+  + +  LAAL SL  +  LDL G                   
Sbjct: 382 IINLSNTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLNE 441

Query: 285 -----ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
                 R+TD     L +  NL +L I    LT+ G+   K  ++L LL+L
Sbjct: 442 LSLKGTRLTDLSLYQLSSLPNLINLSIGDTVLTNGGLNSFKPPATLKLLDL 492


>gi|225426352|ref|XP_002266070.1| PREDICTED: uncharacterized protein LOC100261612 [Vitis vinifera]
          Length = 598

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 192/459 (41%), Gaps = 114/459 (24%)

Query: 14  LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 72
           +  R  +++ A+ M    G   L  L++  C RI +  L  + G+  L+ L++  C   +
Sbjct: 73  IDLRGESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRCIKFS 132

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           DS ++ L  +  L+ L IS + VT  GI  +  L  L++L+L G PVT   L SL  L  
Sbjct: 133 DSGLRHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTK 192

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI- 191
           L YL+L   ++S+ G         L  LN+ + ++T      L  L ++  LN+ +C I 
Sbjct: 193 LQYLDLWGSKISNKGAADLVVFPKLSFLNIAWTDVTT-----LPDLPSIACLNMSNCTIH 247

Query: 192 ------GDEGLV---------------------------------NLTGLCNLKC----- 207
                 G + L+                                 +L   C L C     
Sbjct: 248 SMFEGEGAKALLEKITVSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCFLSCMKALE 307

Query: 208 -LELSDTQVG-------------------------SSGLRHLSG-LTNLESINLSFTGIS 240
            L+LS T +G                         S+G+  L+G + NLE+I+LS T + 
Sbjct: 308 HLDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVD 367

Query: 241 DGSLRKLAGLSSLKSLNL-----------DARQITDTGLAALTSLTGLTHLDLFGARITD 289
           D ++  ++ +SS+K +NL           D+  + +  LAAL SL  +  LDL G ++ D
Sbjct: 368 DVAISYISMMSSVKIINLSNTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVED 427

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
                L  F+ L  L + G  LTD              L+L Q           +S L  
Sbjct: 428 EALCPLLRFQQLNELSLKGTRLTD--------------LSLYQ-----------LSSLPN 462

Query: 350 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           L++L++ ++ +T+ GL   KP   L+ L L  C +   D
Sbjct: 463 LINLSIGDTVLTNGGLNSFKPPATLKLLDLRGCWLLTED 501



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 173/411 (42%), Gaps = 92/411 (22%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESL 63
           + G   L SL+      IT   +    G+ NL +LDL RC +    GL +L  +  L+ L
Sbjct: 89  IGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKL 148

Query: 64  NIKWCNC-----------------------ITDSDMKPLSGLTNLKSLQISCSKVTDSGI 100
            I                            +TD  +  L  LT L+ L +  SK+++ G 
Sbjct: 149 CISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYLDLWGSKISNKGA 208

Query: 101 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD----DGCEK------ 150
           A L    KL+ LN+    VT     +L  L S+  LN++ C +      +G +       
Sbjct: 209 ADLVVFPKLSFLNIAWTDVT-----TLPDLPSIACLNMSNCTIHSMFEGEGAKALLEKIT 263

Query: 151 --------------FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
                         F +   L  L++  + +   C   L  +  LE L+L    +GD+ +
Sbjct: 264 VSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCF--LSCMKALEHLDLSFTMMGDDSI 321

Query: 197 VNLTGL-CNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLK 254
             +  +  NL+ L LS+T+V S+G+  L+G + NLE+I+LS T + D ++  ++ +SS+K
Sbjct: 322 QLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSVK 381

Query: 255 SLNL-----------DARQITDTGLAALTSLTGLTHLDLFG------------------- 284
            +NL           D+  + +  LAAL SL  +  LDL G                   
Sbjct: 382 IINLSNTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLNE 441

Query: 285 -----ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
                 R+TD     L +  NL +L I    LT+ G+   K  ++L LL+L
Sbjct: 442 LSLKGTRLTDLSLYQLSSLPNLINLSIGDTVLTNGGLNSFKPPATLKLLDL 492


>gi|207743293|ref|YP_002259685.1| type III effector gala6 protein [Ralstonia solanacearum IPO1609]
 gi|206594690|emb|CAQ61617.1| type III effector gala6 protein [Ralstonia solanacearum IPO1609]
          Length = 625

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 161/350 (46%), Gaps = 2/350 (0%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I   G +A AG   LV L+L        G + L     L+SLN    N I D+ +   
Sbjct: 245 NMIGPDGARALAG-APLVSLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGF 302

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           +  T L  L ++ + +  +G   L+    LT L+L    +  A    L+   SL  LN+ 
Sbjct: 303 ADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVR 362

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
             ++ DDG E  ++  +LK LNL +N I  +    L G T L  L+L +C I   G   L
Sbjct: 363 NNEIGDDGTEALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASAL 422

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
               ++  L L   ++G SG R ++ +  L  ++LS   I D   + LAG  SL SLNLD
Sbjct: 423 ARNTSVASLHLGSNRIGDSGARAIATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLD 482

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
             +I D G AAL     LT L+L   RI  +GA +L     L  L++    +   G + +
Sbjct: 483 DNEIGDDGTAALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRIGPEGAEAL 542

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
              + LT LN+S N              T L SL+  N+R+  AG + L+
Sbjct: 543 SLSTVLTTLNVSGNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGAKMLE 592



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 151/324 (46%), Gaps = 26/324 (8%)

Query: 85  LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
           LKSL ++  ++   G   L     LT L+L GC +      +L+   S+  L+L+   + 
Sbjct: 189 LKSLSLNGIEIDAEGARLLATCASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIG 248

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
            DG    +    L  LNL  N I DE  + L     L+SLN  + GIGD G++       
Sbjct: 249 PDGARALAG-APLVSLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTV 307

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           L  L L+   +G +G R L   T+L  ++LS   + D   + LAG  SL SLN+   +I 
Sbjct: 308 LTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIG 367

Query: 265 DTGLAAL---TSL---------------------TGLTHLDLFGARITDSGAAYLRNFKN 300
           D G  AL   T+L                     T L+ LDL    I   GA+ L    +
Sbjct: 368 DDGTEALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTS 427

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           + SL +    + D+G + I  + +LTLL+LS+N N+ D   ++++G   L+SLN+ ++ I
Sbjct: 428 VASLHLGSNRIGDSGARAIATIRTLTLLDLSRN-NIHDAGAQVLAGNDSLMSLNLDDNEI 486

Query: 361 TSAGLRHLKPLKNLRSLTLESCKV 384
              G   L     L SL L S ++
Sbjct: 487 GDDGTAALAQHPRLTSLNLASNRI 510


>gi|83748568|ref|ZP_00945588.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
 gi|83724776|gb|EAP71934.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
          Length = 629

 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 161/350 (46%), Gaps = 2/350 (0%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I   G +A AG   LV L+L        G + L     L+SLN    N I D+ +   
Sbjct: 249 NMIGPDGARALAG-APLVSLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGF 306

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           +  T L  L ++ + +  +G   L+    LT L+L    +  A    L+   SL  LN+ 
Sbjct: 307 ADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVR 366

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
             ++ DDG E  ++  +LK LNL +N I  +    L G T L  L+L +C I   G   L
Sbjct: 367 NNEIGDDGTEALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASAL 426

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
               ++  L L   ++G SG R ++ +  L  ++LS   I D   + LAG  SL SLNLD
Sbjct: 427 ARNTSVASLHLGSNRIGDSGARAIATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLD 486

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
             +I D G AAL     LT L+L   RI  +GA +L     L  L++    +   G + +
Sbjct: 487 DNEIGDDGTAALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRIGPEGAEAL 546

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
              + LT LN+S N              T L SL+  N+R+  AG + L+
Sbjct: 547 SLSTVLTTLNVSGNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGAKMLE 596



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 151/324 (46%), Gaps = 26/324 (8%)

Query: 85  LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
           LKSL ++  ++   G   L     LT L+L GC +      +L+   S+  L+L+   + 
Sbjct: 193 LKSLSLNGIEIDAEGARLLATCASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIG 252

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
            DG    +    L  LNL  N I DE  + L     L+SLN  + GIGD G++       
Sbjct: 253 PDGARALAG-APLVSLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTV 311

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           L  L L+   +G +G R L   T+L  ++LS   + D   + LAG  SL SLN+   +I 
Sbjct: 312 LTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIG 371

Query: 265 DTGLAAL---TSL---------------------TGLTHLDLFGARITDSGAAYLRNFKN 300
           D G  AL   T+L                     T L+ LDL    I   GA+ L    +
Sbjct: 372 DDGTEALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTS 431

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           + SL +    + D+G + I  + +LTLL+LS+N N+ D   ++++G   L+SLN+ ++ I
Sbjct: 432 VASLHLGSNRIGDSGARAIATIRTLTLLDLSRN-NIHDAGAQVLAGNDSLMSLNLDDNEI 490

Query: 361 TSAGLRHLKPLKNLRSLTLESCKV 384
              G   L     L SL L S ++
Sbjct: 491 GDDGTAALAQHPRLTSLNLASNRI 514


>gi|290994540|ref|XP_002679890.1| predicted protein [Naegleria gruberi]
 gi|284093508|gb|EFC47146.1| predicted protein [Naegleria gruberi]
          Length = 293

 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 1/234 (0%)

Query: 146 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
           +G +  S+I  L  L++  N+I  E    +  +  L SLN+   GIG EG   ++ +  L
Sbjct: 17  EGGKFISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNIFKNGIGVEGAKLISEMKQL 76

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
             L++S   +   G++ +S +  L S+++S   I     + ++G+  L SLN+   +I+D
Sbjct: 77  TSLDISGNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLISGMKQLTSLNISKNEISD 136

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
            G   ++ +  LT L ++ + I D GA YL   K L SL+I    +   G K I ++  L
Sbjct: 137 EGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDISSNPMGVEGAKFISEMKQL 196

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           T L++S N  + D+  E ISG+  L SLN+SN+ I   G + +  +K L SL +
Sbjct: 197 TSLDISNNL-IYDEGAEFISGMKQLTSLNISNNIILDEGAKLISEMKQLTSLDI 249



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 138/280 (49%), Gaps = 1/280 (0%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           +  L SL I  +++   G  ++  +++LT L++    +       +S +  L  LN+ + 
Sbjct: 1   MKQLTSLSIGVNEIGVEGGKFISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNIFKN 60

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            +  +G +  S++  L  L++  N I DE +  +  +  L SL++    IG EG   ++G
Sbjct: 61  GIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLISG 120

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           +  L  L +S  ++   G + +S +  L S+ +  +GI D   + L+ +  L SL++ + 
Sbjct: 121 MKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDISSN 180

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
            +   G   ++ +  LT LD+    I D GA ++   K L SL I    + D G K I +
Sbjct: 181 PMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIILDEGAKLISE 240

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           +  LT L++  N  + D+  + ISG+  L SL V  +RI+
Sbjct: 241 MKQLTSLDICYN-EIGDEGAKFISGMKQLTSLYVYANRIS 279



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 118/237 (49%)

Query: 77  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           K +S +  L SL I  + +   G   +  +++LT L++ G  +    + S+S +  L  L
Sbjct: 44  KLISEMKQLTSLNIFKNGIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSL 103

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           ++++ ++  +G +  S +  L  LN+  NEI+DE    +  +  L SL +   GI D+G 
Sbjct: 104 DISKNEIGVEGAKLISGMKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGA 163

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
             L+ +  L  L++S   +G  G + +S +  L S+++S   I D     ++G+  L SL
Sbjct: 164 KYLSEIKQLTSLDISSNPMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSL 223

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
           N+    I D G   ++ +  LT LD+    I D GA ++   K L SL +    ++D
Sbjct: 224 NISNNIILDEGAKLISEMKQLTSLDICYNEIGDEGAKFISGMKQLTSLYVYANRISD 280



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 9/175 (5%)

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           SI ++  G+  G    ++ +  L SL++   QI   G   ++ +  LT L++F   I   
Sbjct: 8   SIGVNEIGVEGGKF--ISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNIFKNGIGVE 65

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
           GA  +   K L SL+I G  + D GVK I ++  LT L++S+N  +  +  +LISG+  L
Sbjct: 66  GAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLDISKN-EIGVEGAKLISGMKQL 124

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSRDLPN 399
            SLN+S + I+  G + +  +K L SLT+    +        ++IK+L S D+ +
Sbjct: 125 TSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDISS 179



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 26/215 (12%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S +  LTSL     N I  +G+K+ + +  L  LD+ +      G   + G+ +L SLN
Sbjct: 70  ISEMKQLTSLDIS-GNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLISGMKQLTSLN 128

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I+D   K +S +  L SL I  S + D G  YL  +++LT L++   P+     
Sbjct: 129 ISK-NEISDEGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDISSNPMGVEGA 187

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG--------------------- 163
             +S +  L  L+++   + D+G E  S +  L  LN+                      
Sbjct: 188 KFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIILDEGAKLISEMKQLTSL 247

Query: 164 ---FNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
              +NEI DE    + G+  L SL + +  I DE 
Sbjct: 248 DICYNEIGDEGAKFISGMKQLTSLYVYANRISDEA 282


>gi|168701212|ref|ZP_02733489.1| hypothetical protein GobsU_16936 [Gemmata obscuriglobus UQM 2246]
          Length = 410

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 123/268 (45%), Gaps = 35/268 (13%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-- 217
           L+L  +++TD+ L  L G  NL  L L+   I D GL +L  L  L  L L  T  G+  
Sbjct: 107 LSLAHHDVTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGATS 166

Query: 218 ---------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
                    +GL  L  +  L  ++L    ++D   R LA +  L+ L L+  +ITD  L
Sbjct: 167 AGSYRGITDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGTKITDAAL 226

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
             L  LT LT +DL   ++TD+G  +L  FK L  + +    +TDAGV+ +  L  LT L
Sbjct: 227 ENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAALPELTDL 286

Query: 329 NLS------------------------QNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           +LS                        +   + D+  + ++   GL  LN+  +R+   G
Sbjct: 287 DLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLTRLNLGYTRVGDDG 346

Query: 365 LRHLKPLKNLRSLTLESCKVTANDIKRL 392
           +  L    NL  LTL + +VT + ++ L
Sbjct: 347 VSALAAAPNLTGLTLVATRVTDDGVRSL 374



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 138/306 (45%), Gaps = 15/306 (4%)

Query: 88  LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 147
           L ++   VTD  +A L G   L +L L G  +T A L  L+AL  L  L+L+        
Sbjct: 107 LSLAHHDVTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTS----- 161

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
               +  GS       +  ITD  L  L+ +  L  L+L    + D G   L  +  L+ 
Sbjct: 162 -RGATSAGS-------YRGITDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRV 213

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267
           L L  T++  + L +L+ LT L  I+L+FT ++D  L+ LA    L  + L +  +TD G
Sbjct: 214 LGLEGTKITDAALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAG 273

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKN-LRSLEICGGGLTDAGVKHIKDLSSLT 326
           +  L +L  LT LDL   +  D G   L    N L S+ +    + D G K +     LT
Sbjct: 274 VRELAALPELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLT 333

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
            LNL     + D  +  ++    L  L +  +R+T  G+R L   + L  + L   +VT 
Sbjct: 334 RLNLGYT-RVGDDGVSALAAAPNLTGLTLVATRVTDDGVRSLFACRKLAYVELRETEVTD 392

Query: 387 NDIKRL 392
             I+ L
Sbjct: 393 GAIREL 398



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 142/310 (45%), Gaps = 18/310 (5%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           +TD  +  L+G  NL  L+++ + +TD+G+ +L  L  L+ L+L G         S  A 
Sbjct: 114 VTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGT--------SRGAT 165

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            +  Y  +     +D G  +   I  L  L+LG  E+TD     L  +  L  L L+   
Sbjct: 166 SAGSYRGI-----TDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGTK 220

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           I D  L NL  L  L  ++L+ T+V  +GL+HL+    L  + LS T ++D  +R+LA L
Sbjct: 221 ITDAALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAAL 280

Query: 251 SSLKSLNLDARQITDTGLAALTSLTG-LTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
             L  L+L   +  D G+ AL +    LT + L   R+ D GA  L     L  L +   
Sbjct: 281 PELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLTRLNLGYT 340

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL- 368
            + D GV  +    +LT L L     +TD  +  +     L  + +  + +T   +R L 
Sbjct: 341 RVGDDGVSALAAAPNLTGLTLVAT-RVTDDGVRSLFACRKLAYVELRETEVTDGAIRELL 399

Query: 369 --KPLKNLRS 376
             +P   LRS
Sbjct: 400 KARPGCRLRS 409



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM-KLESLNIKWCNCITDSDMK 77
           + A+T  G++  A L  L  LDL       GG+  L     +L S++++    + D   K
Sbjct: 266 STAVTDAGVRELAALPELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTR-VGDEGAK 324

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
            L+    L  L +  ++V D G++ L     LT L L    VT   + SL A   L Y+ 
Sbjct: 325 ALAAAPGLTRLNLGYTRVGDDGVSALAAAPNLTGLTLVATRVTDDGVRSLFACRKLAYVE 384

Query: 138 LNRCQLSDDGCEKFSK 153
           L   +++D    +  K
Sbjct: 385 LRETEVTDGAIRELLK 400


>gi|320165725|gb|EFW42624.1| hypothetical protein CAOG_07756 [Capsaspora owczarzaki ATCC 30864]
          Length = 880

 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 122/417 (29%), Positives = 175/417 (41%), Gaps = 34/417 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLES 62
            SGL+ L  L +  NN IT     AF+G   LV+L L   + T I      L GL  L  
Sbjct: 271 FSGLTALIYL-YLYNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSA--LTGLSALTQ 327

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPV 119
           L + + N IT       SGLT L  L++S + +T        GL KLT L+L   +   +
Sbjct: 328 LYL-YNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLSLNQLTSI 386

Query: 120 TAACLDSLSALG---------------------SLFYLNLNRCQLSDDGCEKFSKIGSLK 158
            A     L+AL                      +L YL LN  Q++      F+ + +L 
Sbjct: 387 PAGAFSGLTALTQLLLFNNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALV 446

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
            L L  N+IT        GL+ L  L L S  I    +   TGL +L  LELS+ Q+ S 
Sbjct: 447 QLQLYGNQITTIPASAFAGLSALVQLYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSL 506

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
                +GLT +  ++L    +S        GL++L++L L   QIT     A T LT L 
Sbjct: 507 PANAFAGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALYLYNNQITTVAANAFTGLTALV 566

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
            L L+  +IT   A+       L  L +    +T         L+ LT L++S N  +T 
Sbjct: 567 QLHLYRNQITTIPASAFAGLSALVQLYLNSNRITTIFANAFPSLTKLTYLDISNN-QITS 625

Query: 339 KTLELISGLTGLVSLNVSN---SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
                 +GLT +  L++ N   S + S+    L  L+ L     +   V AN    L
Sbjct: 626 LPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQALFLFNNQISSVAANAFTSL 682



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 171/406 (42%), Gaps = 28/406 (6%)

Query: 6   SGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           S  + LT+L   +  NN I    + AF+GL  L  L L     I        GL  L+ L
Sbjct: 149 SAFTGLTALQILYLHNNQIATVAINAFSGLTALQTLYLYNNQIITVATNAFSGLAALQVL 208

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
            +   N IT       SGL+ L +LQ++ + ++    +   GL  L  L L+   +T   
Sbjct: 209 RLD-TNQITTVPANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALIQLRLDTNQITTVP 267

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
            ++ S L +L YL L   Q++      FS   +L  L L  N+IT      L GL+ L  
Sbjct: 268 ANAFSGLTALIYLYLYNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSALTGLSALTQ 327

Query: 184 LNLDSCGI------GDEGLVNL------------------TGLCNLKCLELSDTQVGSSG 219
           L L +  I      G  GL  L                  TGL  L  L+LS  Q+ S  
Sbjct: 328 LYLYNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLSLNQLTSIP 387

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
               SGLT L  + L    +S        GL++L  L L+  QIT     A T LT L  
Sbjct: 388 AGAFSGLTALTQLLLFNNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQ 447

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L L+G +IT   A+       L  L +    +T   V     L+ L+LL LS N  +T  
Sbjct: 448 LQLYGNQITTIPASAFAGLSALVQLYLYSNRITAIFVNAFTGLTHLSLLELSNN-QITSL 506

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
                +GLT +  L++ N+ +++        L  L++L L + ++T
Sbjct: 507 PANAFAGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALYLYNNQIT 552



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 176/407 (43%), Gaps = 31/407 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
            +GLS L  L +  +N ITA  + AF GL +L  L+L   + T +        GL  +  
Sbjct: 463 FAGLSALVQL-YLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPANA--FAGLTAMTQ 519

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++ + N ++       +GLT L++L +  +++T        GL  L  L+L    +T  
Sbjct: 520 LSL-YNNSLSAVPSSAFTGLTALQALYLYNNQITTVAANAFTGLTALVQLHLYRNQITTI 578

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
              + + L +L  L LN  +++      F  +  L  L++  N+IT        GLT + 
Sbjct: 579 PASAFAGLSALVQLYLNSNRITTIFANAFPSLTKLTYLDISNNQITSLPANAFTGLTAMT 638

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-------- 234
            L+L +           TGL  L+ L L + Q+ S      + LT L  + L        
Sbjct: 639 QLHLYNNLFSTVPSSAFTGLTALQALFLFNNQISSVAANAFTSLTALIQLQLYGNLITTI 698

Query: 235 ---SFTGISDGSLRKL-------------AGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
              +F+G+S  +L +L              GL++L  L LD  QIT     A + LT L 
Sbjct: 699 PAGAFSGLSKLNLLQLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALI 758

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
           +L L+G +IT   A+       L++L +    +T         L++L  L+LS +  +T 
Sbjct: 759 YLSLYGNQITTISASAFAGLTALQALYLNDNTITTIAANAFAGLTALNWLDLS-DSQITS 817

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
               + S L  L  LN+ N+ +++        L  L  LT+   ++T
Sbjct: 818 IPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRIT 864



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 173/408 (42%), Gaps = 31/408 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLV--KLDLERCTRIHGGLVNLKGLMKLES 62
            SGLS L +L    NN ++A    AF GL  L+  +LD  + T +        GL  L  
Sbjct: 223 FSGLSKLNTLQLN-NNWLSAIPSSAFTGLTALIQLRLDTNQITTVPANA--FSGLTALIY 279

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L + + N IT       SG T L  LQ+  +++T    + L GL  LT L L    +T+ 
Sbjct: 280 LYL-YNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSALTGLSALTQLYLYNNQITSV 338

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             +  S L +L  L L+   ++      F+ +  L  L+L  N++T        GLT L 
Sbjct: 339 PANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALT 398

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L L +  +        TGL  L  L L++ Q+ +      +GLT L  + L    I+  
Sbjct: 399 QLLLFNNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQLQLYGNQITTI 458

Query: 243 SLRKLAGLSSLKSLNLDARQITD------TGLA------------------ALTSLTGLT 278
                AGLS+L  L L + +IT       TGL                   A   LT +T
Sbjct: 459 PASAFAGLSALVQLYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPANAFAGLTAMT 518

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
            L L+   ++   ++       L++L +    +T         L++L  L+L +N  +T 
Sbjct: 519 QLSLYNNSLSAVPSSAFTGLTALQALYLYNNQITTVAANAFTGLTALVQLHLYRN-QITT 577

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
                 +GL+ LV L ++++RIT+        L  L  L + + ++T+
Sbjct: 578 IPASAFAGLSALVQLYLNSNRITTIFANAFPSLTKLTYLDISNNQITS 625



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 169/418 (40%), Gaps = 37/418 (8%)

Query: 7   GLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN-LKGLMKLE 61
           G S LT+L+  R  NN IT+    AF GL  L  LDL   + T I  G  + L  L +L 
Sbjct: 342 GFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLL 401

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
             N  W + +  S     +GLT L  L ++ +++T        GL  L  L L G  +T 
Sbjct: 402 LFN-NWLSAVPSSAF---TGLTALIYLYLNNNQITTVAANAFTGLTALVQLQLYGNQITT 457

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
               + + L +L  L L   +++      F+ +  L +L L  N+IT        GLT +
Sbjct: 458 IPASAFAGLSALVQLYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPANAFAGLTAM 517

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L+L +  +        TGL  L+ L L + Q+ +      +GLT L  ++L    I+ 
Sbjct: 518 TQLSLYNNSLSAVPSSAFTGLTALQALYLYNNQITTVAANAFTGLTALVQLHLYRNQITT 577

Query: 242 GSLRKLAGLSSLKSLNLDAR------------------------QITDTGLAALTSLTGL 277
                 AGLS+L  L L++                         QIT     A T LT +
Sbjct: 578 IPASAFAGLSALVQLYLNSNRITTIFANAFPSLTKLTYLDISNNQITSLPANAFTGLTAM 637

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
           T L L+    +   ++       L++L +    ++         L++L  L L  N  +T
Sbjct: 638 TQLHLYNNLFSTVPSSAFTGLTALQALFLFNNQISSVAANAFTSLTALIQLQLYGNL-IT 696

Query: 338 DKTLELISGLTGLVSLNVSN---SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
                  SGL+ L  L + N   S I S+    L  L  LR  T +   V AN    L
Sbjct: 697 TIPAGAFSGLSKLNLLQLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGL 754



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 159/385 (41%), Gaps = 10/385 (2%)

Query: 6   SGLSNLTSLSFRR--NNAITAQGMKAFAGL--INLVKLDLERCTRIHG-GLVNLKGLMKL 60
           S  + LT+L++ R   N IT     AF+GL  +N ++L+    + I       L  L++L
Sbjct: 77  SAFTGLTALTYMRLDTNQITTVPANAFSGLSTLNTLQLNNNWLSAIPSSAFTGLTALIQL 136

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
              N    N IT       +GLT L+ L +  +++    I    GL  L  L L    + 
Sbjct: 137 LLNN----NQITTVPSSAFTGLTALQILYLHNNQIATVAINAFSGLTALQTLYLYNNQII 192

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
               ++ S L +L  L L+  Q++      FS +  L  L L  N ++        GLT 
Sbjct: 193 TVATNAFSGLAALQVLRLDTNQITTVPANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTA 252

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  L LD+  I        +GL  L  L L + Q+ +      SG T L  + L    I+
Sbjct: 253 LIQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTVATNAFSGPTALVQLQLYGNQIT 312

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
                 L GLS+L  L L   QIT       + LT LT L L    IT   A        
Sbjct: 313 TIPSSALTGLSALTQLYLYNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTK 372

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L  L++    LT         L++LT L L  N  L+       +GLT L+ L ++N++I
Sbjct: 373 LTYLDLSLNQLTSIPAGAFSGLTALTQLLLFNNW-LSAVPSSAFTGLTALIYLYLNNNQI 431

Query: 361 TSAGLRHLKPLKNLRSLTLESCKVT 385
           T+        L  L  L L   ++T
Sbjct: 432 TTVAANAFTGLTALVQLQLYGNQIT 456



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 146/357 (40%), Gaps = 50/357 (14%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 65
           +G+   T+  + ++N IT+    AF GL  L  + L+                       
Sbjct: 55  TGIPATTTTLYLQSNQITSISSSAFTGLTALTYMRLD----------------------- 91

Query: 66  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 125
              N IT       SGL+ L +LQ++ +                    L   P +A    
Sbjct: 92  --TNQITTVPANAFSGLSTLNTLQLNNNW-------------------LSAIPSSA---- 126

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
             + L +L  L LN  Q++      F+ + +L++L L  N+I    +    GLT L++L 
Sbjct: 127 -FTGLTALIQLLLNNNQITTVPSSAFTGLTALQILYLHNNQIATVAINAFSGLTALQTLY 185

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           L +  I        +GL  L+ L L   Q+ +      SGL+ L ++ L+   +S     
Sbjct: 186 LYNNQIITVATNAFSGLAALQVLRLDTNQITTVPANAFSGLSKLNTLQLNNNWLSAIPSS 245

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
              GL++L  L LD  QIT     A + LT L +L L+  +IT            L  L+
Sbjct: 246 AFTGLTALIQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTVATNAFSGPTALVQLQ 305

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           + G  +T      +  LS+LT L L  N  +T       SGLT L  L +SN+ ITS
Sbjct: 306 LYGNQITTIPSSALTGLSALTQLYLYNN-QITSVPANGFSGLTALTDLRLSNNTITS 361



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 136/327 (41%), Gaps = 14/327 (4%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
            +GL+ L  L   RN  IT     AFAGL  LV+L L   R T I         L KL  
Sbjct: 559 FTGLTALVQLHLYRNQ-ITTIPASAFAGLSALVQLYLNSNRITTIFANA--FPSLTKLTY 615

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L+I   N IT       +GLT +  L +     S V  S    L  LQ L L N +   V
Sbjct: 616 LDIS-NNQITSLPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQALFLFNNQISSV 674

Query: 120 TAACLDSLSALGSL-FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
            A    SL+AL  L  Y NL    ++      FS +  L +L L  N ++        GL
Sbjct: 675 AANAFTSLTALIQLQLYGNL----ITTIPAGAFSGLSKLNLLQLYNNWLSAIPSSAFTGL 730

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           T L  L LD+  I        +GL  L  L L   Q+ +      +GLT L+++ L+   
Sbjct: 731 TALTQLRLDTNQITTVPANAFSGLTALIYLSLYGNQITTISASAFAGLTALQALYLNDNT 790

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           I+  +    AGL++L  L+L   QIT       +SL  L  L+L+   ++    +     
Sbjct: 791 ITTIAANAFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGL 850

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSL 325
             L  L + G  +T         L++L
Sbjct: 851 TALTQLTMYGNRITTISANAFTGLNAL 877



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 117/276 (42%), Gaps = 3/276 (1%)

Query: 7   GLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
              +LT L++    NN IT+    AF GL  + +L L              GL  L++L 
Sbjct: 606 AFPSLTKLTYLDISNNQITSLPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQAL- 664

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N I+       + LT L  LQ+  + +T        GL KL LL L    ++A   
Sbjct: 665 FLFNNQISSVAANAFTSLTALIQLQLYGNLITTIPAGAFSGLSKLNLLQLYNNWLSAIPS 724

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            + + L +L  L L+  Q++      FS + +L  L+L  N+IT        GLT L++L
Sbjct: 725 SAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLSLYGNQITTISASAFAGLTALQAL 784

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
            L+   I         GL  L  L+LSD+Q+ S      S L  L  +NL    +S    
Sbjct: 785 YLNDNTITTIAANAFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVPT 844

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
               GL++L  L +   +IT     A T L  L  L
Sbjct: 845 SAFTGLTALTQLTMYGNRITTISANAFTGLNALVQL 880


>gi|290974964|ref|XP_002670214.1| predicted protein [Naegleria gruberi]
 gi|284083770|gb|EFC37470.1| predicted protein [Naegleria gruberi]
          Length = 383

 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 145/278 (52%), Gaps = 1/278 (0%)

Query: 63  LNIKWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +N+K+   + DS  +K ++ +  LKSL IS +++ D G  ++  +++LT L++    +  
Sbjct: 106 VNLKFSRRLLDSIQVKFITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYNRIGV 165

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             +  ++ +  L  L+++   + D+G +  S++  L  L+   N I D+    +  + +L
Sbjct: 166 VGVKFINEMKHLTSLDISGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHL 225

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L++++  IG EG   ++ +  LK L + + Q+G  G + ++ +  L S+++S   I  
Sbjct: 226 TLLSINNNHIGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGV 285

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             +  ++ +  L SL +   QI D G   ++ +  L  L+++  +I   GA ++   K L
Sbjct: 286 EGVIPISEMKQLTSLEIGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQL 345

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           +SL I G  + D GVK I ++  LT L++  N  + DK
Sbjct: 346 KSLYIGGNQIGDEGVKFISEMKQLTSLDIGYNEIVKDK 383



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 125/253 (49%), Gaps = 25/253 (9%)

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           ++ +  L  L+++  ++ D+G +  S++  L  L++G+N I    +  +  + +L SL++
Sbjct: 123 ITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYNRIGVVGVKFINEMKHLTSLDI 182

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
              GIGDEG+ +++ L  L  L+ ++ ++G  G + +S + +L  ++++   I     R 
Sbjct: 183 SGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHLTLLSINNNHIGAEGARF 242

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           ++ +  LKSL++   QI D G   +  +  LT LD+ G  I   G   +   K L SLEI
Sbjct: 243 ISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGVEGVIPISEMKQLTSLEI 302

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
            G  + D G K                         LIS +  L+SLN+ N++I   G +
Sbjct: 303 GGNQIGDEGAK-------------------------LISEMKQLISLNIYNNQIGIEGAK 337

Query: 367 HLKPLKNLRSLTL 379
            +  +K L+SL +
Sbjct: 338 FISEMKQLKSLYI 350



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 31/179 (17%)

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA----------------- 292
           ++S+ +L    R +    +  +T +  L  LD+   RI D GA                 
Sbjct: 102 MNSIVNLKFSRRLLDSIQVKFITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYN 161

Query: 293 -------AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
                   ++   K+L SL+I G G+ D GVK I +L  LT L+ + N  + DK  + IS
Sbjct: 162 RIGVVGVKFINEMKHLTSLDISGNGIGDEGVKSISELKQLTSLDFNNN-RIGDKGAKSIS 220

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TANDIKRLQSRDLP 398
            +  L  L+++N+ I + G R +  +K L+SL++ + ++        N++K+L S D+ 
Sbjct: 221 EMKHLTLLSINNNHIGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDIS 279


>gi|307108381|gb|EFN56621.1| hypothetical protein CHLNCDRAFT_57520 [Chlorella variabilis]
          Length = 790

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 130/398 (32%), Positives = 195/398 (48%), Gaps = 53/398 (13%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLM 58
           E L  L +L +L+ +    +T +G+   +GL  L  L+L+ C  +  G    L  L  L 
Sbjct: 396 ELLPTLRSLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALH 455

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 117
           +L SL ++ C+ + D  +  L GLT+L+ L +S C ++T  G+A L  L+ L  L L+ C
Sbjct: 456 RLTSLCMRGCDRLADGALDFLPGLTSLRQLDLSGCKELTADGLAPLSSLRLLACLRLQHC 515

Query: 118 P--VTAACLDSLSALGSLFYLNLNRC------------------QLSDDGCEKFSKIGSL 157
                AA L  LS L SL  LNL  C                  QLS +GC        +
Sbjct: 516 SGLRGAAALRPLSTLSSLTALNLGGCTAIHGQSLRALGTLSALRQLSLEGCR------GV 569

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD---- 212
            +L+ G   +          L  L SLNL  C  + D GL  +  L  L  L LS+    
Sbjct: 570 VLLDAGLEALAPS-------LHRLTSLNLQGCSTLTDAGLQKMGPLTGLVSLNLSECPSI 622

Query: 213 TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAA 270
           T  G++  R    +  L S+ L    G+ D  L  LAGL++L+SLNL   +++ D GLAA
Sbjct: 623 TGAGAAAWR----MPLLASLQLQNSPGVDDAGLAALAGLTALRSLNLKQCKRVGDGGLAA 678

Query: 271 LT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTL 327
           +  +L  LT L L G + +TD+G A L   ++L+ LE+       DAG+  +  LS+L+ 
Sbjct: 679 MAPALQRLTALCLQGMSEVTDAGVAQLGALRSLQDLELQFAWQFGDAGIAALTRLSALSR 738

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNV-SNSRITSAG 364
           L+L  +  +TD +L  +  +T L+SLNV    R+T  G
Sbjct: 739 LDLMYSWKITDDSLRSLGRMTSLLSLNVLGCHRLTPGG 776



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 183/372 (49%), Gaps = 40/372 (10%)

Query: 27  MKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 83
           ++A A    L  LD+  CT +     G   L  L +L  LN+K C  + D  ++ L  L 
Sbjct: 343 LEAVARCRGLRALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLELLPTLR 402

Query: 84  NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNRC 141
           +L +L +  C +VTD G+A+L GL +L  LNL+GC   A     SLS LG+L  L     
Sbjct: 403 SLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHRLT---- 458

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 200
            L   GC++ +                D  L  L GLT+L  L+L  C  +  +GL  L+
Sbjct: 459 SLCMRGCDRLA----------------DGALDFLPGLTSLRQLDLSGCKELTADGLAPLS 502

Query: 201 GLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLN 257
            L  L CL L       G++ LR LS L++L ++NL   T I   SLR L  LS+L+ L+
Sbjct: 503 SLRLLACLRLQHCSGLRGAAALRPLSTLSSLTALNLGGCTAIHGQSLRALGTLSALRQLS 562

Query: 258 LDA-RQIT--DTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI--CGGG 310
           L+  R +   D GL AL  SL  LT L+L G + +TD+G   +     L SL +  C   
Sbjct: 563 LEGCRGVVLLDAGLEALAPSLHRLTSLNLQGCSTLTDAGLQKMGPLTGLVSLNLSEC-PS 621

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLK 369
           +T AG    + +  L  L L  +  + D  L  ++GLT L SLN+    R+   GL  + 
Sbjct: 622 ITGAGAAAWR-MPLLASLQLQNSPGVDDAGLAALAGLTALRSLNLKQCKRVGDGGLAAMA 680

Query: 370 P-LKNLRSLTLE 380
           P L+ L +L L+
Sbjct: 681 PALQRLTALCLQ 692



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 150/345 (43%), Gaps = 60/345 (17%)

Query: 92  CSKVTDSG------IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLS 144
           CS+V+  G      +A  +GL+ L +    G          LS L  L  LNL  C  L+
Sbjct: 332 CSRVSTVGDGVLEAVARCRGLRALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLA 391

Query: 145 DDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-----GIGDE---- 194
           DDG E    + SL  LNL    ++TD  L HL GLT LE LNL  C     G G      
Sbjct: 392 DDGLELLPTLRSLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGL 451

Query: 195 -GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
             L  LT LC   C  L+D       L  L GLT+L  ++LS  G  + +   LA LSSL
Sbjct: 452 GALHRLTSLCMRGCDRLAD-----GALDFLPGLTSLRQLDLS--GCKELTADGLAPLSSL 504

Query: 254 KSLNLDARQITD-----TGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLR--SLE 305
           + L     Q          L  L++L+ LT L+L G   I       L     LR  SLE
Sbjct: 505 RLLACLRLQHCSGLRGAAALRPLSTLSSLTALNLGGCTAIHGQSLRALGTLSALRQLSLE 564

Query: 306 ICGGG-LTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITS 362
            C G  L DAG++ +   L  LT LNL     LTD  L+ +  LTGLVSLN+S    IT 
Sbjct: 565 GCRGVVLLDAGLEALAPSLHRLTSLNLQGCSTLTDAGLQKMGPLTGLVSLNLSECPSITG 624

Query: 363 AGLRHLK-PL-----------------------KNLRSLTLESCK 383
           AG    + PL                         LRSL L+ CK
Sbjct: 625 AGAAAWRMPLLASLQLQNSPGVDDAGLAALAGLTALRSLNLKQCK 669



 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 12/150 (8%)

Query: 263 ITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAY--LRNFKNLRSLEICG-GGLTDAGVKH 318
           + D  L A+    GL  LD+ G   +TD G  +  L   + L  L + G   L D G++ 
Sbjct: 338 VGDGVLEAVARCRGLRALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLEL 397

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG----LRHLKPLKNL 374
           +  L SL  LNL +   +TD+ L  +SGLT L  LN+   R  + G    L  L  L  L
Sbjct: 398 LPTLRSLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHRL 457

Query: 375 RSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
            SL +  C   A+         LP L S R
Sbjct: 458 TSLCMRGCDRLADGALDF----LPGLTSLR 483


>gi|406834160|ref|ZP_11093754.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
          Length = 390

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 144/267 (53%), Gaps = 8/267 (2%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           + L++  + DD      +   L  L+L   +ITD  L +L  +  L+ L+L    I D G
Sbjct: 95  ITLDQSPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSRTKISDAG 154

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           L +L  L NL  L +++T V  +G   L+GL NL  +N+S T ++D SL+ ++ + +L +
Sbjct: 155 LEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLNVSKTNVTDTSLKVISEIPNLNT 214

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK--NLRSLEICGGGLTD 313
           L LD   +TD GLA+L     LT L L G  +T S   +L+  K   L  L +       
Sbjct: 215 LILDGCNLTDVGLASLKDCQSLTFLSLDGIPLTGS---FLKELKGIPLEYLTLANSKCDG 271

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 373
              K +  L +L +L+L +NC + D ++  I+ +  L +L++ N++IT   +  LK + +
Sbjct: 272 TTFKDVGTLKNLKMLSL-ENCPVEDASIASIAAIASLETLSLDNTKITEQAIVELKDMPS 330

Query: 374 LRSLTLESCKVTANDIKRLQSRDLPNL 400
           L SL++ S  ++A ++++L++   PNL
Sbjct: 331 LVSLSINSTPISAEELRQLKAT--PNL 355



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 153/312 (49%), Gaps = 10/312 (3%)

Query: 26  GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 85
            + A A L ++V  D +   + +GG       ++++ + +   + I D D+  L     L
Sbjct: 65  AVAAPAVLQSIVGKDWDGWDQFYGG-------VEVDQITLDQ-SPIGDDDLAVLKQTPQL 116

Query: 86  KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 145
             L +  +K+TD+G+ YL  + +L  L+L    ++ A L+ L  L +L  L +    ++D
Sbjct: 117 VGLSLRATKITDAGLKYLSSVPRLQKLDLSRTKISDAGLEHLQTLVNLCELTIAETSVTD 176

Query: 146 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
            G  K + + +L+VLN+    +TD  L  +  + NL +L LD C + D GL +L    +L
Sbjct: 177 AGTAKLAGLKNLRVLNVSKTNVTDTSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQSL 236

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
             L L    +  S L+ L G+  LE + L+ +     + + +  L +LK L+L+   + D
Sbjct: 237 TFLSLDGIPLTGSFLKELKGIP-LEYLTLANSKCDGTTFKDVGTLKNLKMLSLENCPVED 295

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
             +A++ ++  L  L L   +IT+     L++  +L SL I    ++   ++ +K   +L
Sbjct: 296 ASIASIAAIASLETLSLDNTKITEQAIVELKDMPSLVSLSINSTPISAEELRQLKATPNL 355

Query: 326 TLLNLSQNCNLT 337
            L+  + N  +T
Sbjct: 356 KLVK-AHNTKVT 366



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 132/271 (48%), Gaps = 31/271 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS +  L  L   R   I+  G++    L+NL +L +   +    G   L GL  L  LN
Sbjct: 134 LSSVPRLQKLDLSRTK-ISDAGLEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLN 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N +TD+ +K +S + NL +L +    +TD G+A LK  Q LT L+L+G P+T + L
Sbjct: 193 VSKTN-VTDTSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQSLTFLSLDGIPLTGSFL 251

Query: 125 DSLSALGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             L  +  L YL L  ++C    DG   F  +G+LK                     NL+
Sbjct: 252 KELKGI-PLEYLTLANSKC----DGT-TFKDVGTLK---------------------NLK 284

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L+L++C + D  + ++  + +L+ L L +T++    +  L  + +L S++++ T IS  
Sbjct: 285 MLSLENCPVEDASIASIAAIASLETLSLDNTKITEQAIVELKDMPSLVSLSINSTPISAE 344

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
            LR+L    +LK +     ++T   + AL +
Sbjct: 345 ELRQLKATPNLKLVKAHNTKVTRGDVDALAA 375



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 145/315 (46%), Gaps = 26/315 (8%)

Query: 81  GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
           G   +  + +  S + D  +A LK   +L  L+L    +T A L  LS++  L  L+L+R
Sbjct: 88  GGVEVDQITLDQSPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSR 147

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
            ++SD G E    + +L  L +    +TD     L GL NL  LN               
Sbjct: 148 TKISDAGLEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLN--------------- 192

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
                    +S T V  + L+ +S + NL ++ L    ++D  L  L    SL  L+LD 
Sbjct: 193 ---------VSKTNVTDTSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQSLTFLSLDG 243

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
             +T + L  L  +  L +L L  ++   +    +   KNL+ L +    + DA +  I 
Sbjct: 244 IPLTGSFLKELKGIP-LEYLTLANSKCDGTTFKDVGTLKNLKMLSLENCPVEDASIASIA 302

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
            ++SL  L+L  N  +T++ +  +  +  LVSL+++++ I++  LR LK   NL+ +   
Sbjct: 303 AIASLETLSL-DNTKITEQAIVELKDMPSLVSLSINSTPISAEELRQLKATPNLKLVKAH 361

Query: 381 SCKVTANDIKRLQSR 395
           + KVT  D+  L + 
Sbjct: 362 NTKVTRGDVDALAAE 376


>gi|330842680|ref|XP_003293301.1| hypothetical protein DICPUDRAFT_158109 [Dictyostelium purpureum]
 gi|325076385|gb|EGC30175.1| hypothetical protein DICPUDRAFT_158109 [Dictyostelium purpureum]
          Length = 684

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 152/328 (46%), Gaps = 36/328 (10%)

Query: 30  FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 89
           F+  IN+    LE          N K    L  L+++    +TD   K L  L NL+ L 
Sbjct: 318 FSNCINMTDYGLE-------VFKNEKFHRNLRVLDLRHNRNLTDVGCKNLKNLVNLEELY 370

Query: 90  ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD---- 145
           +  + ++D G+A+LK L  L  L++  C +T   + ++S    L  LNL+  Q++D    
Sbjct: 371 LGSTSISDLGVAFLKQLVNLKTLDVSRCKITDNAMVTISLFSKLTLLNLSETQITDVAIS 430

Query: 146 --------------DGCEKFSK--------IGSLKVLNLGFNEITDECLVHLKGLTNLES 183
                           C+K +            +++L++   +I+    VHLK L NL  
Sbjct: 431 NIHQILTNIQYLYLSNCQKLTNKSLFFLTYFSKMRLLSITGTQISLNGFVHLKRLPNLLY 490

Query: 184 LNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           L L +   + D+ +V L  L  LK L+L+D    +S +  L  L  LE + L+ T + D 
Sbjct: 491 LELPNRYCLNDQTIVYLNSLTKLKKLDLTDYTYITS-IEPLDNLKYLEELLLANTRVGDS 549

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           S+  +  + SL+ L+LD   IT  G+A L  L  L  L L   +I D    YL   K+LR
Sbjct: 550 SVPAIKKMKSLEVLSLDRTDITSAGVAGLVDL-NLKSLSLMKTKIDDDSINYLSEIKSLR 608

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNL 330
            L I    +T   ++ +KD+++L  L+L
Sbjct: 609 QLNISHNNITHKNIEKLKDITNLNSLDL 636



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 142/287 (49%), Gaps = 9/287 (3%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +NL  L NL  L +  + +I+  G+     L+NL  LD+ RC      +V +    KL  
Sbjct: 358 KNLKNLVNLEEL-YLGSTSISDLGVAFLKQLVNLKTLDVSRCKITDNAMVTISLFSKLTL 416

Query: 63  LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           LN+     ITD  +  +   LTN++ L +S C K+T+  + +L    K+ LL++ G  ++
Sbjct: 417 LNLSETQ-ITDVAISNIHQILTNIQYLYLSNCQKLTNKSLFFLTYFSKMRLLSITGTQIS 475

Query: 121 AACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 178
                 L  L +L YL L NR  L+D      + +  LK L+L  +  IT   +  L  L
Sbjct: 476 LNGFVHLKRLPNLLYLELPNRYCLNDQTIVYLNSLTKLKKLDLTDYTYIT--SIEPLDNL 533

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
             LE L L +  +GD  +  +  + +L+ L L  T + S+G+  L  L NL+S++L  T 
Sbjct: 534 KYLEELLLANTRVGDSSVPAIKKMKSLEVLSLDRTDITSAGVAGLVDL-NLKSLSLMKTK 592

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           I D S+  L+ + SL+ LN+    IT   +  L  +T L  LDL G 
Sbjct: 593 IDDDSINYLSEIKSLRQLNISHNNITHKNIEKLKDITNLNSLDLRGT 639



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 9/212 (4%)

Query: 170 ECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           E   + K   NL  L+L  +  + D G  NL  L NL+ L L  T +   G+  L  L N
Sbjct: 330 EVFKNEKFHRNLRVLDLRHNRNLTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVN 389

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFG-AR 286
           L+++++S   I+D ++  ++  S L  LNL   QITD  ++ +   LT + +L L    +
Sbjct: 390 LKTLDVSRCKITDNAMVTISLFSKLTLLNLSETQITDVAISNIHQILTNIQYLYLSNCQK 449

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           +T+    +L  F  +R L I G  ++  G  H+K L +L  L L     L D+T+  ++ 
Sbjct: 450 LTNKSLFFLTYFSKMRLLSITGTQISLNGFVHLKRLPNLLYLELPNRYCLNDQTIVYLNS 509

Query: 347 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSL 377
           LT L  L++++ + ITS     ++PL NL+ L
Sbjct: 510 LTKLKKLDLTDYTYITS-----IEPLDNLKYL 536



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 1/143 (0%)

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            ++D   + L  L +L+ L L +  I+D G+A L  L  L  LD+   +ITD+    +  
Sbjct: 351 NLTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVNLKTLDVSRCKITDNAMVTISL 410

Query: 298 FKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           F  L  L +    +TD  + +I   L+++  L LS    LT+K+L  ++  + +  L+++
Sbjct: 411 FSKLTLLNLSETQITDVAISNIHQILTNIQYLYLSNCQKLTNKSLFFLTYFSKMRLLSIT 470

Query: 357 NSRITSAGLRHLKPLKNLRSLTL 379
            ++I+  G  HLK L NL  L L
Sbjct: 471 GTQISLNGFVHLKRLPNLLYLEL 493



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
           R +TD G   L +L  L  L L    I+D G A+L+   NL++L++    +TD  +  I 
Sbjct: 350 RNLTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVNLKTLDVSRCKITDNAMVTIS 409

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 378
             S LTLLNLS+   +TD  +  I   LT +  L +SN  ++T+  L  L     +R L+
Sbjct: 410 LFSKLTLLNLSE-TQITDVAISNIHQILTNIQYLYLSNCQKLTNKSLFFLTYFSKMRLLS 468

Query: 379 LESCKVTANDIKRLQSRDLPNLV 401
           +   +++ N    L  + LPNL+
Sbjct: 469 ITGTQISLNGFVHL--KRLPNLL 489



 Score = 38.5 bits (88), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 310 GLTDAGVKHIKDLS---SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
            +TD G++  K+     +L +L+L  N NLTD   + +  L  L  L + ++ I+  G+ 
Sbjct: 323 NMTDYGLEVFKNEKFHRNLRVLDLRHNRNLTDVGCKNLKNLVNLEELYLGSTSISDLGVA 382

Query: 367 HLKPLKNLRSLTLESCKVTAN 387
            LK L NL++L +  CK+T N
Sbjct: 383 FLKQLVNLKTLDVSRCKITDN 403


>gi|344170515|emb|CCA82933.1| leucine-rich-repeat type III effector protein (GALA5) [blood
           disease bacterium R229]
          Length = 533

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 172/374 (45%), Gaps = 11/374 (2%)

Query: 36  LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 91
           L +LDL RC     G +   G+  L  L +   N     I     + L+    L SL +S
Sbjct: 141 LTELDLSRCR----GPITAAGIAHLSHLPLVRLNVRDQRIGVEGARLLANHPTLTSLDVS 196

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 151
             ++   G   L G  +LT L++    + A    +L+A  +L  L+++   + D+G    
Sbjct: 197 NGRIGPEGARALAGNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISENGIGDEGACAL 256

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
           +    L  LN+  N I  E    L     L SL++    IGDEG+  L     L  L + 
Sbjct: 257 ATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVE 316

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
            T+VG+ G+  L+    L S+ +    I D   R LA  +SL +L++++  I+  G  AL
Sbjct: 317 RTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQAL 376

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
            + T LT L+L    I D+GA        L SL +   GL+DAG   +    +LT L+  
Sbjct: 377 AANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLAASKTLTTLDAG 436

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
            N  + D     ++    L +L+V ++ I +AG R L     L SL L + +VT   ++ 
Sbjct: 437 DNT-IRDAGARALAANRTLTTLDVRSNEIENAGARALAANTGLASLDLRNNRVTEAGVRA 495

Query: 392 -LQSRDLPNL-VSF 403
            L +R L +L VSF
Sbjct: 496 LLANRTLSSLGVSF 509



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 171/368 (46%), Gaps = 13/368 (3%)

Query: 17  RRNNAITAQGMKAFA-GLINLVKLDLER-CTRIHGGLVNLK---GLMKLESLNIKWCNCI 71
           RR+  +  Q ++A +  L   V+ D+ +   R   GL  +K       LE L +      
Sbjct: 72  RRSKPLAVQRLRAVSKPLKAAVEADMRQLVIRDRAGLAGVKRAGNYPALEKLTL--IGPF 129

Query: 72  TDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
           TD+D++ L    +L  L +S C   +T +GIA+L  L  L  LN+    +       L+ 
Sbjct: 130 TDNDLRGLPA--SLTELDLSRCRGPITAAGIAHLSHL-PLVRLNVRDQRIGVEGARLLAN 186

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
             +L  L+++  ++  +G    +    L  L++  N I  E    L     L SL++   
Sbjct: 187 HPTLTSLDVSNGRIGPEGARALAGNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISEN 246

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
           GIGDEG   L     L  L ++  ++G  G + L+    L S+++    I D  +R LA 
Sbjct: 247 GIGDEGACALATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAA 306

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
            + L +LN++  ++   G+ AL +   LT L +    I D+GA  L    +L +L I   
Sbjct: 307 NARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESN 366

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
           G++ AG + +   ++LT LNL  N  + D   +  S  T L+SL+V  + ++ AG   L 
Sbjct: 367 GISPAGAQALAANTTLTTLNLGYN-GIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLA 425

Query: 370 PLKNLRSL 377
             K L +L
Sbjct: 426 ASKTLTTL 433



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 4/338 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+    LTSL    N  I  +G +A AG   L  L +        G   L     L SL+
Sbjct: 184 LANHPTLTSLDVS-NGRIGPEGARALAGNTRLTTLSVSHNRIGAEGAKALAASETLTSLD 242

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I D     L+  T L +L ++ +++   G   L   + LT L++ G  +    +
Sbjct: 243 IS-ENGIGDEGACALATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGV 301

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            +L+A   L  LN+ R ++  DG    +   +L  L +  N I D     L   T+L +L
Sbjct: 302 RALAANARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTL 361

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           +++S GI   G   L     L  L L    +G +G +  S  T L S+++   G+SD   
Sbjct: 362 HIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGA 421

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
             LA   +L +L+     I D G  AL +   LT LD+    I ++GA  L     L SL
Sbjct: 422 TTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTGLASL 481

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
           ++    +T+AGV+ +  L++ TL +L  + N   K  E
Sbjct: 482 DLRNNRVTEAGVRAL--LANRTLSSLGVSFNYCSKPTE 517


>gi|290993458|ref|XP_002679350.1| leucine rich repeat protein [Naegleria gruberi]
 gi|284092966|gb|EFC46606.1| leucine rich repeat protein [Naegleria gruberi]
          Length = 528

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 181/353 (51%), Gaps = 11/353 (3%)

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           K    L  L++   NC  +  +K L  L +L  L +S +K  + G+ Y+  ++ LT LN+
Sbjct: 125 KRFYNLRELDLSGQNCYREG-VKCLKSLKHLTVLNVSKTKCAN-GVKYIGMIENLTSLNI 182

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
               +    ++ LS+L  L  L++N C L+ +  +  S++ SL  L++G N++    L+ 
Sbjct: 183 SSVHLENQDVEHLSSLKKLTSLDVNNCNLTFEDADIISRLKSLTFLDIGNNDLGPLGLLP 242

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +  + +L++L+++   I  E   +LT + NL  L +S    G+ GL+ +S + NL  +++
Sbjct: 243 ISSMESLQTLHINRIWIESESCESLTKMINLTELYISKNDFGNEGLKWISSMKNLRVLDI 302

Query: 235 S----FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
                   + D + + +A L+ L  LN+   +IT +G   LTSLT LT L + G  I D 
Sbjct: 303 GNHSIIDALGDEAAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICDD 362

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
               + + K L  L I GG ++  GVK I  L  LT+L++S+      + L+ +  +  L
Sbjct: 363 FLDSISSLKELTYLNISGGQISVKGVKSISKLPRLTILDISECVGCCSEVLKQLGLMKQL 422

Query: 351 VSLNVSNSRITSA--GLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
            SL++S + +  +  G ++  K L NL  L +  C +  N IK +    LPNL
Sbjct: 423 TSLHLSLTDLVESVEGFKYWHKNLINLTYLEMNFCGLDDNAIKWISG--LPNL 473



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 187/395 (47%), Gaps = 39/395 (9%)

Query: 33  LINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 90
             NL +LDL  + C R   G+  LK L  L  LN+    C   + +K +  + NL SL I
Sbjct: 127 FYNLRELDLSGQNCYR--EGVKCLKSLKHLTVLNVSKTKCA--NGVKYIGMIENLTSLNI 182

Query: 91  SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 150
           S   + +  + +L  L+KLT L++  C +T    D +S L SL +L++    L   G   
Sbjct: 183 SSVHLENQDVEHLSSLKKLTSLDVNNCNLTFEDADIISRLKSLTFLDIGNNDLGPLGLLP 242

Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
            S + SL+ L++    I  E    L  + NL  L +     G+EGL  ++ + NL+ L++
Sbjct: 243 ISSMESLQTLHINRIWIESESCESLTKMINLTELYISKNDFGNEGLKWISSMKNLRVLDI 302

Query: 211 SDTQV----GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            +  +    G    + ++ LT L  +N+S   I+    + L  L+ L +L +D  +I D 
Sbjct: 303 GNHSIIDALGDEAAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICDD 362

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGG--------------- 309
            L +++SL  LT+L++ G +I+  G   +     L  L+I  C G               
Sbjct: 363 FLDSISSLKELTYLNISGGQISVKGVKSISKLPRLTILDISECVGCCSEVLKQLGLMKQL 422

Query: 310 -----GLTD-----AGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
                 LTD      G K+  K+L +LT L ++  C L D  ++ ISGL  L  L++ ++
Sbjct: 423 TSLHLSLTDLVESVEGFKYWHKNLINLTYLEMN-FCGLDDNAIKWISGLPNLKYLDLQSN 481

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
            +T   ++HL  +K L  L+L    +T    KRL+
Sbjct: 482 DLTDDCIQHLLGMKKLEYLSLFGNNMTEKKTKRLE 516



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 143/300 (47%), Gaps = 30/300 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S + +L +L   R   I ++  ++   +INL +L + +    + GL  +  +  L  L+
Sbjct: 243 ISSMESLQTLHINR-IWIESESCESLTKMINLTELYISKNDFGNEGLKWISSMKNLRVLD 301

Query: 65  I---KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           I      + + D   K ++ LT L  L IS  ++T SG  YL  L KLT L ++G  +  
Sbjct: 302 IGNHSIIDALGDEAAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICD 361

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             LDS+S+L  L YLN++  Q+S  G +  SK+  L +L++       EC+         
Sbjct: 362 DFLDSISSLKELTYLNISGGQISVKGVKSISKLPRLTILDIS------ECV--------- 406

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS--GLRHL-SGLTNLESINLSFTG 238
                   G   E L  L  +  L  L LS T +  S  G ++    L NL  + ++F G
Sbjct: 407 --------GCCSEVLKQLGLMKQLTSLHLSLTDLVESVEGFKYWHKNLINLTYLEMNFCG 458

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           + D +++ ++GL +LK L+L +  +TD  +  L  +  L +L LFG  +T+     L  +
Sbjct: 459 LDDNAIKWISGLPNLKYLDLQSNDLTDDCIQHLLGMKKLEYLSLFGNNMTEKKTKRLEKY 518


>gi|356513289|ref|XP_003525346.1| PREDICTED: uncharacterized protein LOC100814174 [Glycine max]
          Length = 589

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 175/427 (40%), Gaps = 103/427 (24%)

Query: 17  RRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSD 75
           R +N++ A+ M       +L  L+L  C R+    L  + G+  L+ L++  C  + D+ 
Sbjct: 71  RGDNSVDAEWMAYLGAYRHLRYLNLSDCHRVSTSALWPITGMSSLQELDLSRCFKVNDAG 130

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           +  +  + NL+ L+IS + VT  G+  L  L+ L+LL+L G PV    L SL  L  L Y
Sbjct: 131 INHILSIPNLERLRISETSVTAKGVKLLASLKNLSLLDLGGLPVDDVALTSLQVLKRLHY 190

Query: 136 LNLNRCQLSDDGCE-------------------KFSKIGSLKVLN--------------- 161
           ++L   ++S+ G                     K  K+  L+ LN               
Sbjct: 191 IDLWGSKISNKGASVLNTFPKLTYLNLAWTSVTKLPKLSFLEYLNMSNCTIDSILEDDKA 250

Query: 162 --------------------------LGFNEITDECL---VHLKGLTNLESLNLDSCGIG 192
                                     L F ++ +        L  +  +E LNL SC +G
Sbjct: 251 PLAKLILSGAMFMNEAEALLYANTNFLSFLDVANSSFHRFFFLSKMKVIEHLNLSSCMMG 310

Query: 193 DEGLVNLTGLC--NLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAG 249
           D+  V +      NLK L LS T+V S+GL  L+G + +LE ++LS T + D ++  ++ 
Sbjct: 311 DDS-VEMVACAGGNLKSLNLSGTRVSSAGLGILAGHVPHLEILSLSQTPVDDTAISFISM 369

Query: 250 LSSLKS-----------------------------------LNLDARQITDTGLAALTSL 274
           + SLK                                    LNL+  Q+ D  L  L+S 
Sbjct: 370 MPSLKDVDLSNTNIKGFLHQGRTDVNSLLSLMALQNLKLERLNLEHTQVRDEALYPLSSF 429

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
             L +L L  A + D    YL +   L +L IC   LT+ G+   K   +L LL+L    
Sbjct: 430 QELRYLSLKSASLADISLYYLSSIPKLTNLSICDAVLTNYGLDMFKAPETLKLLDLKGCW 489

Query: 335 NLTDKTL 341
            LT+ T+
Sbjct: 490 LLTEDTI 496


>gi|296123881|ref|YP_003631659.1| serine/threonine protein kinase-related protein [Planctomyces
            limnophilus DSM 3776]
 gi|296016221|gb|ADG69460.1| Serine/threonine protein kinase-related protein [Planctomyces
            limnophilus DSM 3776]
          Length = 1655

 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 109/465 (23%), Positives = 187/465 (40%), Gaps = 96/465 (20%)

Query: 20   NAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKP 78
            ++I+   +K    L  L  L+L +C ++ G  +   K L  LE+    W   + D D+ P
Sbjct: 1179 SSISDAHLKPLENLPKLTHLELSQCEKVTGAAIRKFKHLTHLEA----WAVPVGDDDLAP 1234

Query: 79   L-----------------------SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 115
            L                       + L++L+S +++ + + +  +A LK   +LT L L 
Sbjct: 1235 LKDNPFRNLDLGGTRITGKALAAFTNLSDLRSSRLAFTSIKNKDLAALKDCHRLTFLALY 1294

Query: 116  GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
               +    +  +  L +L  L L   +++++      K+  L  ++L + ++T E +   
Sbjct: 1295 NTGIGDEGVREICELKALRSLELQGSKVTNEVFFYLMKLPHLLSVDLRYTQVTPEAIESF 1354

Query: 176  KGLTNLESLNLDSCGI-------GDEGLVNLTGLCNLKCLELSD---------------- 212
            +    L  +  D+ G+       GDE + N           L                  
Sbjct: 1355 RKQKPLCEVKCDA-GVLPRWEPNGDELVKNAKADRAAAAFVLKQGKYVWLDNAKDPLHGD 1413

Query: 213  -----------TQVGSSGLRHLS--------GLTNLESINLSFTGISDGSLRKLAGLSSL 253
                       T +   GL+ L+        G  NL  + L   GI+D  LR   G +S+
Sbjct: 1414 PAILPPHLFKLTGISLEGLKTLTPRDFEIFKGCQNLSDLQLLNMGITDEHLRAFEGTTSI 1473

Query: 254  KSLNLDARQITDTGLAALTSLTGLT-----------------------HLDLFGARITDS 290
              L LD + +T  GL+  +    LT                       +L+L G RITD+
Sbjct: 1474 TKLKLDGQAVTSKGLSYFSGCKRLTFLSVWATQADDKFIQSIASPDYTYLNLGGTRITDA 1533

Query: 291  GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
              A   + +NL    +   GLTD G++H+    +LT L L+    LTD + ++   L  L
Sbjct: 1534 SIAAFESLQNLEMATLNFTGLTDEGIEHLASAENLTYLGLNHT-RLTDASAKVFLKLNQL 1592

Query: 351  VSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQS 394
              L +SN++ +  GL  L   L NL+ L L   KVTA+ + + QS
Sbjct: 1593 EELTLSNTQFSDQGLLLLVNALPNLKRLNLLETKVTADSVDKFQS 1637



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 101/219 (46%), Gaps = 2/219 (0%)

Query: 57   LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
            L KL  ++++    +T  D +   G  NL  LQ+    +TD  +   +G   +T L L+G
Sbjct: 1421 LFKLTGISLEGLKTLTPRDFEIFKGCQNLSDLQLLNMGITDEHLRAFEGTTSITKLKLDG 1480

Query: 117  CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              VT+  L   S    L +L++   Q  D   +  +       LNLG   ITD  +   +
Sbjct: 1481 QAVTSKGLSYFSGCKRLTFLSVWATQADDKFIQSIAS-PDYTYLNLGGTRITDASIAAFE 1539

Query: 177  GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
             L NLE   L+  G+ DEG+ +L    NL  L L+ T++  +  +    L  LE + LS 
Sbjct: 1540 SLQNLEMATLNFTGLTDEGIEHLASAENLTYLGLNHTRLTDASAKVFLKLNQLEELTLSN 1599

Query: 237  TGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
            T  SD G L  +  L +LK LNL   ++T   +    SL
Sbjct: 1600 TQFSDQGLLLLVNALPNLKRLNLLETKVTADSVDKFQSL 1638



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 109/453 (24%), Positives = 176/453 (38%), Gaps = 99/453 (21%)

Query: 11   LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 70
            LT + FR    + A+  + F+G  +L K+ L   +                         
Sbjct: 1146 LTGIEFRNKRDLDAKDFEVFSGCRDLEKVRLGFSS------------------------- 1180

Query: 71   ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
            I+D+ +KPL  L  L  L++S C KVT + I   +  + LT L     PV     D L+ 
Sbjct: 1181 ISDAHLKPLENLPKLTHLELSQCEKVTGAAI---RKFKHLTHLEAWAVPVGD---DDLAP 1234

Query: 130  LGSLFYLNLNR--CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
            L    + NL+    +++      F+ +  L+   L F  I ++ L  LK    L  L L 
Sbjct: 1235 LKDNPFRNLDLGGTRITGKALAAFTNLSDLRSSRLAFTSIKNKDLAALKDCHRLTFLALY 1294

Query: 188  SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD---GSL 244
            + GIGDEG+  +  L  L+ LEL  ++V +    +L  L +L S++L +T ++     S 
Sbjct: 1295 NTGIGDEGVREICELKALRSLELQGSKVTNEVFFYLMKLPHLLSVDLRYTQVTPEAIESF 1354

Query: 245  RKLAGLSSLKS-----------------------------------LNLDARQITDTGLA 269
            RK   L  +K                                    + LD  +    G  
Sbjct: 1355 RKQKPLCEVKCDAGVLPRWEPNGDELVKNAKADRAAAAFVLKQGKYVWLDNAKDPLHGDP 1414

Query: 270  AL--TSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
            A+    L  LT + L G + +T       +  +NL  L++   G+TD  ++  +  +S+T
Sbjct: 1415 AILPPHLFKLTGISLEGLKTLTPRDFEIFKGCQNLSDLQLLNMGITDEHLRAFEGTTSIT 1474

Query: 327  LLNLSQNCNLTDKTLELISGLTGL-----------------------VSLNVSNSRITSA 363
             L L     +T K L   SG   L                         LN+  +RIT A
Sbjct: 1475 KLKLDGQA-VTSKGLSYFSGCKRLTFLSVWATQADDKFIQSIASPDYTYLNLGGTRITDA 1533

Query: 364  GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 396
             +   + L+NL   TL    +T   I+ L S +
Sbjct: 1534 SIAAFESLQNLEMATLNFTGLTDEGIEHLASAE 1566



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 15/208 (7%)

Query: 197  VNLTGL--CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
            V LTG+   N + L+  D +V        SG  +LE + L F+ ISD  L+ L  L  L 
Sbjct: 1144 VQLTGIEFRNKRDLDAKDFEV-------FSGCRDLEKVRLGFSSISDAHLKPLENLPKLT 1196

Query: 255  SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
             L L   Q      AA+     LTHL+ +   + D   A L++    R+L++ G  +T  
Sbjct: 1197 HLELS--QCEKVTGAAIRKFKHLTHLEAWAVPVGDDDLAPLKD-NPFRNLDLGGTRITGK 1253

Query: 315  GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
             +    +LS L    L+   ++ +K L  +     L  L + N+ I   G+R +  LK L
Sbjct: 1254 ALAAFTNLSDLRSSRLAFT-SIKNKDLAALKDCHRLTFLALYNTGIGDEGVREICELKAL 1312

Query: 375  RSLTLESCKVTANDIKRLQSRDLPNLVS 402
            RSL L+  KVT      L    LP+L+S
Sbjct: 1313 RSLELQGSKVTNEVFFYLMK--LPHLLS 1338


>gi|300704275|ref|YP_003745878.1| leucine-rich-repeat type III effector protein (gala6) [Ralstonia
           solanacearum CFBP2957]
 gi|299071939|emb|CBJ43268.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
           solanacearum CFBP2957]
          Length = 519

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 147/308 (47%), Gaps = 2/308 (0%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
            L SLN+   N I D     L+    LKSL  S + + D+G+        LT LNL G  
Sbjct: 153 PLVSLNLH-NNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNM 211

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +  A   +L    SL  L+L+  +L D G +  +   SL  LN+  NEI D+    L   
Sbjct: 212 IGPAGARALRRNTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVRSNEIGDDGTEALARN 271

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           T L+SLNL    IG  G   L G   L+ L+L    +   G   L+  T+L S++L    
Sbjct: 272 TTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNR 331

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           I D   R LA   +L  L+L    I D G  AL     LT L+L+G  + D GAA L   
Sbjct: 332 IGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQH 391

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
             L SL +    +   G +H+   ++LT L+LS+N  L  +  E +S  T L +LNVS++
Sbjct: 392 PRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSEN-RLGPEGAEALSLSTVLTTLNVSDN 450

Query: 359 RITSAGLR 366
            I  AG R
Sbjct: 451 AIGEAGAR 458



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 179/416 (43%), Gaps = 53/416 (12%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           M  +L     LTS+ F+    +T + +KA    +    LD+ RCT   G  V+  GL  L
Sbjct: 26  MFAHLGKYPALTSVRFK--GELTLEALKALPPGVE--HLDISRCT---GRGVSNAGLAHL 78

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            +              +PL      KSL ++  ++   G   L     LT L+L GC + 
Sbjct: 79  AT--------------RPL------KSLSLNGIEIDAEGARLLATCASLTSLSLTGCSIG 118

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
                +L+   S+  L+L+   +  DG    +    L  LNL  N I DE  + L     
Sbjct: 119 DRAATALAQSRSIASLDLSVNMIGPDGARALAS-APLVSLNLHNNGIGDEGALALATSGT 177

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L+SLN  + GIGD G++       L  L L+   +G +G R L   T+L  ++LS   + 
Sbjct: 178 LKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLG 237

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-------FGA-------- 285
           D   + LAG  SL SLN+ + +I D G  AL   T L  L+L       +GA        
Sbjct: 238 DAGAQALAGSRSLTSLNVRSNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTT 297

Query: 286 ---------RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
                     I   GA+ L    +L SL +    + D G + +    +LTLL+LS+N N+
Sbjct: 298 LRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALATSRTLTLLDLSRN-NI 356

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            D   + ++G   L SLN+  + +   G   L     L SL L   ++  N  + L
Sbjct: 357 HDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHL 412



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 121/274 (44%), Gaps = 2/274 (0%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I   G +A     +L +LDL        G   L G   L SLN++  N I D   + L
Sbjct: 210 NMIGPAGARALRRNTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVR-SNEIGDDGTEAL 268

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           +  T LKSL +S + +   G   L G   L  L+L  C +      +L+   SL  L+L 
Sbjct: 269 ARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLG 328

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
             ++ DDG    +   +L +L+L  N I D     L G  +L SLNL    + D+G   L
Sbjct: 329 SNRIGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAAL 388

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
                L  L L   ++G +G +HL+    L  ++LS   +       L+  + L +LN+ 
Sbjct: 389 AQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRLGPEGAEALSLSTVLTTLNVS 448

Query: 260 ARQITDTGLAALTSL-TGLTHLDLFGARITDSGA 292
              I + G  A     T LT LD    R+ ++GA
Sbjct: 449 DNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGA 482



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 150/369 (40%), Gaps = 50/369 (13%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I   G +A A    LV L+L        G + L     L+SLN    N I D+ +   
Sbjct: 139 NMIGPDGARALAS-APLVSLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGF 196

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           +  T L  L ++ + +  +G   L+    LT L+L    +  A   +L+   SL  LN+ 
Sbjct: 197 ADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVR 256

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDE------------------CLVHLKGL--- 178
             ++ DDG E  ++  +LK LNL +N I                     C +   G    
Sbjct: 257 SNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASAL 316

Query: 179 ---TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
              T+L SL+L S  IGD+                        G R L+    L  ++LS
Sbjct: 317 ARNTSLASLHLGSNRIGDD------------------------GARALATSRTLTLLDLS 352

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
              I D   + LAG  SL SLNL   ++ D G AAL     LT L+L   RI  +GA +L
Sbjct: 353 RNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHL 412

Query: 296 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
                L  L++    L   G + +   + LT LN+S N              T L SL+ 
Sbjct: 413 AKSATLTELDLSENRLGPEGAEALSLSTVLTTLNVSDNAIGEAGARAFAEKSTSLTSLDA 472

Query: 356 SNSRITSAG 364
            N+R+  AG
Sbjct: 473 RNNRMGEAG 481


>gi|320166208|gb|EFW43107.1| tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864]
          Length = 1869

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 169/385 (43%), Gaps = 11/385 (2%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLES 62
            +GL+ L +L +  NN I    + AF+GL  LV+L L   + T I        GL KL +
Sbjct: 127 FTGLTALQTL-YLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANA--FSGLSKLNT 183

Query: 63  L--NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           L  N  W + I  S    L+ LT L       + V  S    L  LQ L L N +   + 
Sbjct: 184 LQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQTLYLYNNQ---IA 240

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
              +++ S L +L  L L+  Q++      FS +  L  L+L  N ++        GLT 
Sbjct: 241 TVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTA 300

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  L LD+  I        TGL  L+ L L + Q+ +      SGL  L+ + L    I+
Sbjct: 301 LTQLRLDTNQITTVPSSAFTGLTALQTLYLYNNQIITVATNAFSGLAALQVLRLDTNQIT 360

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
                  +GLS+L +L L    ++    +A T LT LT L L+  +IT   ++       
Sbjct: 361 TVPANAFSGLSALNTLQLSNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFTGLTA 420

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L++L +    +    +     L++L  L L  N  +T  +    SGL+ L +L ++N+ +
Sbjct: 421 LQTLYLYNNQIATVAINAFSGLTALVQLYLYNN-QITSISANAFSGLSKLNTLQLNNNWL 479

Query: 361 TSAGLRHLKPLKNLRSLTLESCKVT 385
           ++        L  L  L L + ++T
Sbjct: 480 SAIPSSAFTGLTALTQLLLYNNQIT 504



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 161/382 (42%), Gaps = 8/382 (2%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER---CTRIHGGLVNLKGLMKLES 62
           +G+   T++ +  +N IT+    AF GL  L  L L               L  L +L+ 
Sbjct: 55  TGIPATTTILYLSSNQITSISSSAFTGLTALTYLQLNNNWLSAIPSSAFTGLTALTQLQL 114

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
            N    N IT       +GLT L++L +  +++    I    GL  L  L L    +T+ 
Sbjct: 115 YN----NQITTVPSSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNNQITSI 170

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             ++ S L  L  L LN   LS      F+ + +L  L L  N+IT        GLT L+
Sbjct: 171 SANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQ 230

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           +L L +  I    +   +GL  L  L L   Q+ +      SGL+ L +++L    +S  
Sbjct: 231 TLYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAI 290

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
                 GL++L  L LD  QIT    +A T LT L  L L+  +I             L+
Sbjct: 291 PSSAFTGLTALTQLRLDTNQITTVPSSAFTGLTALQTLYLYNNQIITVATNAFSGLAALQ 350

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            L +    +T         LS+L  L LS N  L+       +GLT L  L + N++IT+
Sbjct: 351 VLRLDTNQITTVPANAFSGLSALNTLQLSNNW-LSAIPSSAFTGLTALTQLQLYNNQITT 409

Query: 363 AGLRHLKPLKNLRSLTLESCKV 384
                   L  L++L L + ++
Sbjct: 410 VPSSAFTGLTALQTLYLYNNQI 431



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 175/407 (42%), Gaps = 32/407 (7%)

Query: 7    GLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
            G S LT+L+  R  NN IT+    AF GL  L  LDL   + T I  G     GL  L  
Sbjct: 678  GFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGA--FSGLTALTQ 735

Query: 63   LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
            L + + N ++       +GLT L  L +  +++T        GL  L  L L G  +T  
Sbjct: 736  L-LLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTI 794

Query: 123  CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
               + + + SL  L L   +++      F+ +  L +L++  N+IT        GLT + 
Sbjct: 795  SASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNNQITSLPANAFTGLTAMT 854

Query: 183  SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-------- 234
             L+L +  +        TGL  L+ L L + Q+ S  +   + LT L  + L        
Sbjct: 855  QLSLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQLYGNQITTI 914

Query: 235  ---SFTGISDGSLRKL-------------AGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
               +F+G+S  SL +L              GL++L  L L   QIT    +A T LT LT
Sbjct: 915  PASAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALT 974

Query: 279  HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
             L L+G +IT   A+       L++L +    +T         L++L  L+LS    +T 
Sbjct: 975  QLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAANAFAGLTALNWLDLS-GSQITS 1033

Query: 339  KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
                + S L  L  LN+ N+ +++        L  L  LT+   ++T
Sbjct: 1034 IPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRIT 1080



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 160/362 (44%), Gaps = 11/362 (3%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESL 63
             +GL+ L  L    N  IT     AFAG+ +LV+L L    RI    VN   GL  L  L
Sbjct: 775  FTGLTALVQLQLYGNQ-ITTISASAFAGMSSLVQLYL-YSNRITAIFVNAFTGLTHLSLL 832

Query: 64   NIKWCNCITDSDMKPLSGLTNLKSLQI---SCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            +I   N IT       +GLT +  L +   S S V  S    L  LQ L L N +   +T
Sbjct: 833  DIS-NNQITSLPANAFTGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALWLYNNQ---IT 888

Query: 121  AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
            +  +++ ++L +L  L L   Q++      FS +  L +L L  N ++        GLT 
Sbjct: 889  SVVVNAFTSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTA 948

Query: 181  LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
            L  L L +  I        TGL  L  L L   Q+ +      +GLT L+++ L+   I+
Sbjct: 949  LTQLQLYNNQITTVPSSAFTGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTIT 1008

Query: 241  DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
              +    AGL++L  L+L   QIT       +SL  L  L+L+   ++    +       
Sbjct: 1009 TIAANAFAGLTALNWLDLSGSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTA 1068

Query: 301  LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
            L  L + G  +T         L++L  L L  N  +T  +    +GL+ L  L +SN++I
Sbjct: 1069 LTQLTMYGNRITTISANAFTGLNALVQLFLQSN-QITTISASAFTGLSLLTQLYLSNNQI 1127

Query: 361  TS 362
            T+
Sbjct: 1128 TT 1129



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 169/393 (43%), Gaps = 30/393 (7%)

Query: 19   NNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 76
            NN IT     AF+GL  LV+L L   + T I      L GL  L  L + + N IT    
Sbjct: 620  NNQITTVPANAFSGLTALVQLQLYGNQITTIPSSA--LTGLSALTQL-LLYNNRITSVPA 676

Query: 77   KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPVTAACLDSLSALGSL 133
               SGLT L  L++  + +T        GL KLT L+L   +   + A     L+AL  L
Sbjct: 677  NGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQL 736

Query: 134  FYLN---------------------LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
               N                     L   Q++      F+ + +L  L L  N+IT    
Sbjct: 737  LLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTISA 796

Query: 173  VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
                G+++L  L L S  I    +   TGL +L  L++S+ Q+ S      +GLT +  +
Sbjct: 797  SAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNNQITSLPANAFTGLTAMTQL 856

Query: 233  NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
            +L    +S        GL++L++L L   QIT   + A TSLT L  L L+G +IT   A
Sbjct: 857  SLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQLYGNQITTIPA 916

Query: 293  AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
            +       L  L++    L+         L++LT L L  N  +T       +GLT L  
Sbjct: 917  SAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLYNN-QITTVPSSAFTGLTALTQ 975

Query: 353  LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
            L++  ++IT+        L  L++L L +  +T
Sbjct: 976  LSLYGNQITTISASAFAGLTALQALYLNNNTIT 1008



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 159/383 (41%), Gaps = 29/383 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLV--KLDLERCTRIHGGLVNLKGLMKLES 62
            +GL+ L +L +  NN I    + AF+GL  LV  +LD  + T +        GL KL +
Sbjct: 223 FTGLTALQTL-YLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANA--FSGLSKLNT 279

Query: 63  LNIK--W---------------------CNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 99
           L++   W                      N IT       +GLT L++L +  +++    
Sbjct: 280 LHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPSSAFTGLTALQTLYLYNNQIITVA 339

Query: 100 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 159
                GL  L +L L+   +T    ++ S L +L  L L+   LS      F+ + +L  
Sbjct: 340 TNAFSGLAALQVLRLDTNQITTVPANAFSGLSALNTLQLSNNWLSAIPSSAFTGLTALTQ 399

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L L  N+IT        GLT L++L L +  I    +   +GL  L  L L + Q+ S  
Sbjct: 400 LQLYNNQITTVPSSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNNQITSIS 459

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
               SGL+ L ++ L+   +S        GL++L  L L   QIT    +A T LT L  
Sbjct: 460 ANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQF 519

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L L+  +I             L  L +    +T         LS L  L+L  N  L+  
Sbjct: 520 LYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNW-LSAI 578

Query: 340 TLELISGLTGLVSLNVSNSRITS 362
                +GLT L  L +  ++IT+
Sbjct: 579 PSSAFTGLTALTQLRLDTNQITT 601



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 158/383 (41%), Gaps = 29/383 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLES 62
            +GL+ L +L +  NN I      AF+GL  + +++LD  + T +        GL  L +
Sbjct: 319 FTGLTALQTL-YLYNNQIITVATNAFSGLAALQVLRLDTNQITTVPANA--FSGLSALNT 375

Query: 63  LNIK--WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           L +   W + I  S    L+ LT L+      + V  S    L  LQ L L N +   V 
Sbjct: 376 LQLSNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALQTLYLYNNQIATVA 435

Query: 121 AACLDSLSALGSLFYLN---------------------LNRCQLSDDGCEKFSKIGSLKV 159
                 L+AL  L+  N                     LN   LS      F+ + +L  
Sbjct: 436 INAFSGLTALVQLYLYNNQITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQ 495

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L L  N+IT        GLT L+ L L +  I    +   +GL  L  L L   Q+ +  
Sbjct: 496 LLLYNNQITTVPSSAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVP 555

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
               SGL+ L +++L    +S        GL++L  L LD  QIT     A + LT L +
Sbjct: 556 ANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALLY 615

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L L+  +IT   A        L  L++ G  +T      +  LS+LT L L  N  +T  
Sbjct: 616 LYLYNNQITTVPANAFSGLTALVQLQLYGNQITTIPSSALTGLSALTQLLLYNN-RITSV 674

Query: 340 TLELISGLTGLVSLNVSNSRITS 362
                SGLT L  L + N+ ITS
Sbjct: 675 PANGFSGLTALTDLRLFNNTITS 697



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 171/414 (41%), Gaps = 27/414 (6%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            +GL+ LT L    NN IT     AF GL  L  L L         +    GL  L  L 
Sbjct: 487 FTGLTALTQL-LLYNNQITTVPSSAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLR 545

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N IT       SGL+ L +L +  + ++    +   GL  LT L L+   +T    
Sbjct: 546 LD-TNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPA 604

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           ++ S L +L YL L   Q++      FS + +L  L L  N+IT      L GL+ L  L
Sbjct: 605 NAFSGLTALLYLYLYNNQITTVPANAFSGLTALVQLQLYGNQITTIPSSALTGLSALTQL 664

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISD 241
            L +  I        +GL  L  L L +  + S      +GLT L  ++LS    T I  
Sbjct: 665 LLYNNRITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPA 724

Query: 242 GSLRKLAGLSSLKSLN--LDA-------------------RQITDTGLAALTSLTGLTHL 280
           G+   L  L+ L   N  L A                    QIT     A T LT L  L
Sbjct: 725 GAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQL 784

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
            L+G +IT   A+      +L  L +    +T   V     L+ L+LL++S N  +T   
Sbjct: 785 QLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNN-QITSLP 843

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
               +GLT +  L++ N+ +++        L  L++L L + ++T+  +    S
Sbjct: 844 ANAFTGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTS 897



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 128/291 (43%), Gaps = 8/291 (2%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLMKLE 61
             +GL+ +T LS   NN+++A    AF GL  L  L L   +  + +     +L  L++L+
Sbjct: 847  FTGLTAMTQLSLY-NNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQ 905

Query: 62   SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
                 + N IT       SGL+ L  LQ++ + ++    +   GL  LT L L    +T 
Sbjct: 906  ----LYGNQITTIPASAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITT 961

Query: 122  ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
                + + L +L  L+L   Q++      F+ + +L+ L L  N IT        GLT L
Sbjct: 962  VPSSAFTGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAANAFAGLTAL 1021

Query: 182  ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
              L+L    I        + L  L  L L +  + +      +GLT L  + +    I+ 
Sbjct: 1022 NWLDLSGSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRITT 1081

Query: 242  GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
             S     GL++L  L L + QIT    +A T L+ LT L L   +IT   A
Sbjct: 1082 ISANAFTGLNALVQLFLQSNQITTISASAFTGLSLLTQLYLSNNQITTISA 1132


>gi|290985429|ref|XP_002675428.1| predicted protein [Naegleria gruberi]
 gi|284089024|gb|EFC42684.1| predicted protein [Naegleria gruberi]
          Length = 451

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 170/345 (49%), Gaps = 32/345 (9%)

Query: 63  LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           +N+ + + + DS  + K +S +  L SL IS + + D     +  +++LT L++    + 
Sbjct: 110 VNVTYSDWLLDSFEEAKFISKMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIG 169

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
                 LS +  L  LN+ + ++ D+G +  S++  L  L++ + ++  E    ++ +  
Sbjct: 170 DEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQ 228

Query: 181 LESLNLDSCG--IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           L SLN+  CG  IG EG+  ++ +  L  L + ++ +G  G + +S +  L S+N+S   
Sbjct: 229 LTSLNI--CGNRIGIEGVKLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNL 286

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           I D   + ++ +  L SLN+ A +I + G   ++ +  L  L++   RI   G   +   
Sbjct: 287 IGDEGAKLISEMKQLISLNIRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEM 346

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS------------- 345
           K L SL I    +++ G K I ++  LTLLN+S N  + D+  +LIS             
Sbjct: 347 KQLISLNIRSNRISNEGTKLISEMRQLTLLNISNN-EIGDEETKLISEMKQLKSLDISYN 405

Query: 346 --GLTG---------LVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             G+ G         L SLN++++RI   G + +  +K L S+TL
Sbjct: 406 QIGIEGAKLISEMKQLTSLNIADNRIGGEGAKLISEMKQLTSITL 450



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 111/213 (52%), Gaps = 2/213 (0%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L SL++   GIGDE    ++ +  L  L++S   +G  G ++LS +  L S+N+   
Sbjct: 131 MKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGKN 190

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I +G+ + ++ +  L SL++   Q+   G   +  +  LT L++ G RI   G   +  
Sbjct: 191 EIDEGA-KYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGVKLISE 249

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
            + L SL I    +   G K I ++  LT LN+S N  + D+  +LIS +  L+SLN+  
Sbjct: 250 MRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNL-IGDEGAKLISEMKQLISLNIRA 308

Query: 358 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
           +RI + G + +  ++ LRSL + + ++    +K
Sbjct: 309 NRIVNQGAKFISEMRQLRSLNISNNRIGIEGVK 341



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 152/326 (46%), Gaps = 3/326 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S +  LTSLS    N I  +  K  + +  L  LD+        G   L  + +L SLN
Sbjct: 128 ISKMKQLTSLSIS-GNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLN 186

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I       D   K +S +  L SL IS ++V   G   ++ +++LT LN+ G  +    +
Sbjct: 187 IGKNEI--DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGV 244

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             +S +  L  LN+    +  +G +  S++  L  LN+  N I DE    +  +  L SL
Sbjct: 245 KLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISL 304

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           N+ +  I ++G   ++ +  L+ L +S+ ++G  G++ +S +  L S+N+    IS+   
Sbjct: 305 NIRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGT 364

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + ++ +  L  LN+   +I D     ++ +  L  LD+   +I   GA  +   K L SL
Sbjct: 365 KLISEMRQLTLLNISNNEIGDEETKLISEMKQLKSLDISYNQIGIEGAKLISEMKQLTSL 424

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNL 330
            I    +   G K I ++  LT + L
Sbjct: 425 NIADNRIGGEGAKLISEMKQLTSITL 450



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 143/304 (47%), Gaps = 34/304 (11%)

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161
           ++  +++LT L++ G  +       +S +  L  L+++   + D+G +  S++  L  LN
Sbjct: 127 FISKMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLN 186

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
           +G NEI DE   ++  +  L SL++    +  EG   +  +  L  L +   ++G  G++
Sbjct: 187 IGKNEI-DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGVK 245

Query: 222 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
            +S +  L S+N+  + I     + ++ +  L SLN+    I D G   ++ +  L  L+
Sbjct: 246 LISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISLN 305

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
           +   RI + GA ++   + LRSL I    +   GVK                        
Sbjct: 306 IRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVK------------------------ 341

Query: 342 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-------ESCKVTANDIKRLQS 394
            LIS +  L+SLN+ ++RI++ G + +  ++ L  L +       E  K+ + ++K+L+S
Sbjct: 342 -LISEMKQLISLNIRSNRISNEGTKLISEMRQLTLLNISNNEIGDEETKLIS-EMKQLKS 399

Query: 395 RDLP 398
            D+ 
Sbjct: 400 LDIS 403



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 121/237 (51%), Gaps = 3/237 (1%)

Query: 150 KF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
           KF SK+  L  L++  N I DE    +  +  L SL++ +  IGDEG   L+ +  L  L
Sbjct: 126 KFISKMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISL 185

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
            +   ++   G +++S +  L S+++S+T +     + +  +  L SLN+   +I   G+
Sbjct: 186 NIGKNEI-DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGV 244

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
             ++ +  LT L++  + I   G   +   K L SL I    + D G K I ++  L  L
Sbjct: 245 KLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISL 304

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           N+  N  + ++  + IS +  L SLN+SN+RI   G++ +  +K L SL + S +++
Sbjct: 305 NIRAN-RIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRIS 360


>gi|428317664|ref|YP_007115546.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
           PCC 7112]
 gi|428241344|gb|AFZ07130.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
           PCC 7112]
          Length = 782

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 122/352 (34%), Positives = 175/352 (49%), Gaps = 62/352 (17%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           ++   LS LTNL +L +  S++ D  IA L  L  LT LNLE   +T   +  LSAL +L
Sbjct: 66  TNFTSLSALTNLTALYLQGSQIND--IASLSALTNLTYLNLESNQITD--ITPLSALTNL 121

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE------------CL--------V 173
            YLNLN  Q++D      S + +L +L+L +N+ITD             CL         
Sbjct: 122 TYLNLNHNQITD--ITPLSGLTNLTILSLEYNQITDITGLSALTNLTDLCLGCNQITDIT 179

Query: 174 HLKGLTNLESLNLDSCGIGD----EGLVNLT----------------GLCNLKCLELSDT 213
            L GLTNL  ++L++  I D      L NLT                 L NL  L +SD 
Sbjct: 180 GLLGLTNLTRVSLNNNEITDVTPLSALTNLTKLGIENQEITDISPLSALTNLTELSISD- 238

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
             G   +  LS LTNL  + +S  GI+D  +  L+ L++L  L++     T T ++ L++
Sbjct: 239 --GIIDISPLSALTNLTELFIS-EGITD--ISPLSALTNLTKLSIIYND-TITEISPLSA 292

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           LT LT L     +ITD  A  L    NL  L +    +TD  +  +  L++LT LNLS N
Sbjct: 293 LTNLTSLYFLYTQITDITA--LSALTNLTYLYLSDNQITD--ITALSALTNLTYLNLSNN 348

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
             +TD  +  +S LT L  LN+SN++IT   +  L  L NL  L LE+ ++T
Sbjct: 349 -QITD--IAALSALTNLTYLNLSNNQIT--DITALSALTNLTELHLETNQIT 395



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 107/290 (36%), Positives = 145/290 (50%), Gaps = 35/290 (12%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLES 62
           LSGL+NLT LS   N      G+ A   L +L  L   + T I G  GL NL  +    S
Sbjct: 137 LSGLTNLTILSLEYNQITDITGLSALTNLTDLC-LGCNQITDITGLLGLTNLTRV----S 191

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN    N ITD  + PLS LTNL  L I   ++TD  I+ L  L  LT L++    +  +
Sbjct: 192 LN---NNEITD--VTPLSALTNLTKLGIENQEITD--ISPLSALTNLTELSISDGIIDIS 244

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITDECLVHLKGLT 179
            L +L+ L  LF           +G    S + +   L  L++ +N+   E +  L  LT
Sbjct: 245 PLSALTNLTELFI---------SEGITDISPLSALTNLTKLSIIYNDTITE-ISPLSALT 294

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           NL SL      I D  +  L+ L NL  L LSD Q+  + +  LS LTNL  +NLS   I
Sbjct: 295 NLTSLYFLYTQITD--ITALSALTNLTYLYLSDNQI--TDITALSALTNLTYLNLSNNQI 350

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
           +D  +  L+ L++L  LNL   QITD  + AL++LT LT L L   +ITD
Sbjct: 351 TD--IAALSALTNLTYLNLSNNQITD--ITALSALTNLTELHLETNQITD 396


>gi|406833162|ref|ZP_11092756.1| hypothetical protein SpalD1_16026 [Schlesneria paludicola DSM
           18645]
          Length = 447

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 174/358 (48%), Gaps = 34/358 (9%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKL 109
           LV    L  L+ L I  C  + D  +  LSGL  L SL ++ S + DSG+   +K   +L
Sbjct: 100 LVLFGKLSDLKKLQIFNCRTLNDEMVAQLSGLKGLTSLALTNSVINDSGVETIVKSFPEL 159

Query: 110 TLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           T L+L     +T   +  +S LG L  L L + Q++D G ++ SK+  L+ L+L      
Sbjct: 160 TELDLSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQRLSKLQELRSLDL------ 213

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
                  +G  N+E+        GD  L  + GL +L+  +   T V  SGL +LS    
Sbjct: 214 -------RG--NMEA--------GDMTLEVVAGLPHLQSFKHRSTAVNDSGLEYLSQGQA 256

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-AR 286
           LES+ L    I+D S   LA LS L  L +   Q     G+ AL  + GL  L L     
Sbjct: 257 LESLLLQDFVITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLALKGM-GLIRLTLRDLPN 315

Query: 287 ITDSGAAYLRNFKNLRSL---EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
           + D       +   LR L   E+   G  DAG+KH+  L SL LL++     +TD+T+++
Sbjct: 316 VDDRAMEVFDDLPQLRRLYLHELTSVG--DAGLKHLAGLKSLELLDIWTVPQMTDETVDV 373

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-ESCKVTANDIKRLQSRDLPNL 400
           IS L  L  L++  + +T + +  L  +K+L+SLT  E+  +TA  +K+L +R    L
Sbjct: 374 ISQLPNLKDLSIRVTGVTDSAIDKLLTMKSLQSLTFKENGSITAEGLKKLSARKWSKL 431



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 135/303 (44%), Gaps = 31/303 (10%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN------ 53
           M   LSGL  LTSL+   N+ I   G++        L +LDL   T +  G+V       
Sbjct: 124 MVAQLSGLKGLTSLALT-NSVINDSGVETIVKSFPELTELDLSSNTNMTNGVVKIISNLG 182

Query: 54  -------------------LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 94
                              L  L +L SL+++      D  ++ ++GL +L+S +   + 
Sbjct: 183 KLQRLTLVQNQINDIGAQRLSKLQELRSLDLRGNMEAGDMTLEVVAGLPHLQSFKHRSTA 242

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSK 153
           V DSG+ YL   Q L  L L+   +T      L+ L  L  L + RCQ    DG      
Sbjct: 243 VNDSGLEYLSQGQALESLLLQDFVITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLALKG 302

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTGLCNLKCLEL-S 211
           +G +++       + D  +     L  L  L L     +GD GL +L GL +L+ L++ +
Sbjct: 303 MGLIRLTLRDLPNVDDRAMEVFDDLPQLRRLYLHELTSVGDAGLKHLAGLKSLELLDIWT 362

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAA 270
             Q+    +  +S L NL+ +++  TG++D ++ KL  + SL+SL       IT  GL  
Sbjct: 363 VPQMTDETVDVISQLPNLKDLSIRVTGVTDSAIDKLLTMKSLQSLTFKENGSITAEGLKK 422

Query: 271 LTS 273
           L++
Sbjct: 423 LSA 425


>gi|344174745|emb|CCA86555.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
           syzygii R24]
          Length = 468

 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 172/374 (45%), Gaps = 11/374 (2%)

Query: 36  LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 91
           L +LDL RC     G +   G+  L  L +   N     I     + L+    L SL +S
Sbjct: 76  LKELDLSRCR----GPITAAGIAHLSRLPLVRLNVRDKRIGAEGARRLANHPTLTSLDVS 131

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 151
             ++   G   L    KLT L++    + A    +L+A  +L  L+++   + ++G    
Sbjct: 132 NGRIGPEGARALADNTKLTTLSVSHNRIGAEGAKALAASKTLTSLDISENGIGNEGACAL 191

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
           +    L  LN+  N+I  E    L     L SL++    IGDEG+  L     L  L + 
Sbjct: 192 ATNAKLTTLNVNRNQIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVE 251

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
            T+VG+ G+  L+    L S+ +    I D   R LA  +SL +L++++  I+  G  AL
Sbjct: 252 RTRVGADGVGALAASKTLTSLRIDSNTIGDAGARALATNTSLTTLHIESNGISPAGAQAL 311

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
            + T LT L+L    I D+GA        L SL +   GL+DAG   +    +LT L+  
Sbjct: 312 AANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRSGLSDAGATTLAASKTLTTLDAG 371

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
            N  + D     ++    L +L+V ++ I +AG R L     L SL L + +VT   ++ 
Sbjct: 372 DNT-IRDAGARALAANRTLTTLDVRSNEIENAGARALAANTRLASLDLRNNRVTKAGVRA 430

Query: 392 -LQSRDLPNL-VSF 403
            L +R L +L VSF
Sbjct: 431 LLANRTLSSLGVSF 444



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 144/334 (43%), Gaps = 28/334 (8%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 68
           + LT+LS   N  I A+G KA A    L  LD+      + G   L    KL +LN+   
Sbjct: 147 TKLTTLSVSHNR-IGAEGAKALAASKTLTSLDISENGIGNEGACALATNAKLTTLNVN-R 204

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I     K L+    L SL I  + + D G+  L    +LT LN+E             
Sbjct: 205 NQIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVE------------- 251

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
                      R ++  DG    +   +L  L +  N I D     L   T+L +L+++S
Sbjct: 252 -----------RTRVGADGVGALAASKTLTSLRIDSNTIGDAGARALATNTSLTTLHIES 300

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
            GI   G   L     L  L L    +G +G +  S  T L S+++  +G+SD     LA
Sbjct: 301 NGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRSGLSDAGATTLA 360

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
              +L +L+     I D G  AL +   LT LD+    I ++GA  L     L SL++  
Sbjct: 361 ASKTLTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTRLASLDLRN 420

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
             +T AGV+ +  L++ TL +L  + N   K +E
Sbjct: 421 NRVTKAGVRAL--LANRTLSSLGVSFNYCSKQIE 452


>gi|283778456|ref|YP_003369211.1| hypothetical protein Psta_0665 [Pirellula staleyi DSM 6068]
 gi|283436909|gb|ADB15351.1| hypothetical protein Psta_0665 [Pirellula staleyi DSM 6068]
          Length = 397

 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 145/303 (47%), Gaps = 30/303 (9%)

Query: 98  SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
            G+  L G++ ++L    G   T  C+D L  +  L  +++++  +S  G  + +    L
Sbjct: 104 EGVHQLHGIRDISL---HGRAFTDKCIDELIKVHQLRGVSISKTSISPAGLARLASCREL 160

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
             ++L   EI D+ L  + G+ +++ L +    I DEGL +     NL  LE+    +  
Sbjct: 161 VSISLWGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAERENLATLEIYVAAITD 220

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
           +GL+ L  L  L  + L  T ++D S+  +    SL+ L LDA  I+D GL  L+    L
Sbjct: 221 AGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKL 280

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
             L + G  I  +G A L   +NLR        L DA                  + N+ 
Sbjct: 281 EVLLVSGCPIDGTGFAKLCELQNLR--------LVDAS-----------------STNIN 315

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE-SCKVTANDIKRLQSRD 396
           D+ L  I+ L GL  L +  S++T  GL+HL+  + LRSL +  + ++T +D K L+++ 
Sbjct: 316 DEGLAAIASLPGLTLLEIRQSKVTGKGLQHLERSEQLRSLLISITDELTLDDAKALKAK- 374

Query: 397 LPN 399
           LPN
Sbjct: 375 LPN 377



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 117/238 (49%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
              TD  +  L  +  L+ + IS + ++ +G+A L   ++L  ++L G  +    L +++
Sbjct: 120 RAFTDKCIDELIKVHQLRGVSISKTSISPAGLARLASCRELVSISLWGPEIEDDHLKAVA 179

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            + S+ +L + R  ++D+G + F++  +L  L +    ITD  L  L  L  L  L L  
Sbjct: 180 GIPSVQHLQVIRSSITDEGLQHFAERENLATLEIYVAAITDAGLKSLVNLPKLRKLELLG 239

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             + D+ +  +    +L+ L L    +   GL  LS    LE + +S   I      KL 
Sbjct: 240 TSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKLEVLLVSGCPIDGTGFAKLC 299

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
            L +L+ ++  +  I D GLAA+ SL GLT L++  +++T  G  +L   + LRSL I
Sbjct: 300 ELQNLRLVDASSTNINDEGLAAIASLPGLTLLEIRQSKVTGKGLQHLERSEQLRSLLI 357



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 1/208 (0%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
            GL  L    +L S+++ W   I D  +K ++G+ +++ LQ+  S +TD G+ +    + 
Sbjct: 149 AGLARLASCRELVSISL-WGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAEREN 207

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L  L +    +T A L SL  L  L  L L    ++D       +  SL+ L L  + I+
Sbjct: 208 LATLEIYVAAITDAGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSIS 267

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           DE L  L     LE L +  C I   G   L  L NL+ ++ S T +   GL  ++ L  
Sbjct: 268 DEGLTFLSRNEKLEVLLVSGCPIDGTGFAKLCELQNLRLVDASSTNINDEGLAAIASLPG 327

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSL 256
           L  + +  + ++   L+ L     L+SL
Sbjct: 328 LTLLEIRQSKVTGKGLQHLERSEQLRSL 355



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 1/217 (0%)

Query: 21  AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 80
           +I+  G+   A    LV + L         L  + G+  ++ L +   + ITD  ++  +
Sbjct: 145 SISPAGLARLASCRELVSISLWGPEIEDDHLKAVAGIPSVQHLQVI-RSSITDEGLQHFA 203

Query: 81  GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
              NL +L+I  + +TD+G+  L  L KL  L L G  VT   + ++    SL  L L+ 
Sbjct: 204 ERENLATLEIYVAAITDAGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDA 263

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
             +SD+G    S+   L+VL +    I       L  L NL  ++  S  I DEGL  + 
Sbjct: 264 HSISDEGLTFLSRNEKLEVLLVSGCPIDGTGFAKLCELQNLRLVDASSTNINDEGLAAIA 323

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
            L  L  LE+  ++V   GL+HL     L S+ +S T
Sbjct: 324 SLPGLTLLEIRQSKVTGKGLQHLERSEQLRSLLISIT 360


>gi|290996590|ref|XP_002680865.1| predicted protein [Naegleria gruberi]
 gi|284094487|gb|EFC48121.1| predicted protein [Naegleria gruberi]
          Length = 304

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 140/265 (52%), Gaps = 4/265 (1%)

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLE 182
           +D    L S+  L+ N  Q+     + FSK+ +L  L+L +NE +TD  +  +  + ++ 
Sbjct: 2   IDYFPTLESVTDLSFNHHQVRITNTKIFSKLKNLTALDLSYNELVTDAHVKEISLIPSMR 61

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            LN+    IG + +V ++ +  L+ L L + ++ +  + +L  LTNL+ +N S    S G
Sbjct: 62  RLNIFCTDIGKQSIVYISEMKLLESLILGELRLEAESVAYLKKLTNLKELNCS--PDSYG 119

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           +   L+ + SL SL L+ +   +  +  ++ LT L HL L+ + I   GA +L N  +  
Sbjct: 120 TSAHLSEMKSLNSLILNVKYNKEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNISSFT 179

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SL + G  + DAG+ +I  L++LT LNLS N  L+D  +  +  L  L  LN++ + I  
Sbjct: 180 SLNLSGNVIRDAGLVNIGKLANLTFLNLSYNG-LSDSGITNLGNLRKLTDLNLNGNNIED 238

Query: 363 AGLRHLKPLKNLRSLTLESCKVTAN 387
            G + +    +L+ L L + ++T N
Sbjct: 239 QGAKIISKFSHLKYLQLRNNQITKN 263



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 146/333 (43%), Gaps = 51/333 (15%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           M +    L ++T LSF  +  +     K F+ L NL  LDL                   
Sbjct: 1   MIDYFPTLESVTDLSFNHH-QVRITNTKIFSKLKNLTALDLS------------------ 41

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
                 +   +TD+ +K +S + +++ L I C+ +    I Y+  ++ L  L L    + 
Sbjct: 42  ------YNELVTDAHVKEISLIPSMRRLNIFCTDIGKQSIVYISEMKLLESLILGELRLE 95

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
           A  +  L  L +L  LN   C     G                          HL  + +
Sbjct: 96  AESVAYLKKLTNLKELN---CSPDSYGTS-----------------------AHLSEMKS 129

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L SL L+     +E + N++ L +L  L+L ++ + S G   LS +++  S+NLS   I 
Sbjct: 130 LNSLILNVKYNKEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNISSFTSLNLSGNVIR 189

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           D  L  +  L++L  LNL    ++D+G+  L +L  LT L+L G  I D GA  +  F +
Sbjct: 190 DAGLVNIGKLANLTFLNLSYNGLSDSGITNLGNLRKLTDLNLNGNNIEDQGAKIISKFSH 249

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           L+ L++    +T  G  ++ +L+SL  L+L +N
Sbjct: 250 LKYLQLRNNQITKNGANYLSNLNSLYSLDLREN 282



 Score = 45.4 bits (106), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 4/150 (2%)

Query: 3   ENLSGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           E++  +S LTSL+  +  N+ I ++G +  + + +   L+L        GLVN+  L  L
Sbjct: 143 EDIENISKLTSLNHLKLWNSNINSKGAEFLSNISSFTSLNLSGNVIRDAGLVNIGKLANL 202

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             LN+ + N ++DS +  L  L  L  L ++ + + D G   +     L  L L    +T
Sbjct: 203 TFLNLSY-NGLSDSGITNLGNLRKLTDLNLNGNNIEDQGAKIISKFSHLKYLQLRNNQIT 261

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEK 150
               + LS L SL+ L+L   +L D   EK
Sbjct: 262 KNGANYLSNLNSLYSLDLRENKL-DYKIEK 290


>gi|254416421|ref|ZP_05030174.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
 gi|196176859|gb|EDX71870.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
          Length = 477

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 139/405 (34%), Positives = 213/405 (52%), Gaps = 61/405 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LSGL+NLT L+   NN IT   + + +GL +L +L L      +  + ++  L  L +L 
Sbjct: 94  LSGLTNLTVLNL-WNNQIT--DISSLSGLTSLTELYLN-----NNQITDISPLSGLTNLT 145

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD--------------------SGIAYLK 104
           +   N    +D+ PLSGLT+L  L +  +++ D                    + I+ L 
Sbjct: 146 VLNLNNNQITDISPLSGLTSLTGLILGGNQIKDVSPLSGLTNLTVLNLNNNQITDISPLS 205

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
           GL  LT+L L    +T   + SLS L SL  L L+  Q++D      S + +L  L L  
Sbjct: 206 GLTSLTVLILYSNQITD--ISSLSGLTSLTVLILSDNQITD--ISPLSGLTNLDALYLNN 261

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           N+ITD  +  L GLTNL++L L++  I D  +  L+GL NL  L L++ Q+  + +  LS
Sbjct: 262 NQITD--ISPLSGLTNLDALYLNNNQITD--ISPLSGLTNLDALYLNNNQI--TDISPLS 315

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
           GLTNL+++ L+   I+D SL  L+GL++L +L L++ QITD  ++ L  LT L +L L  
Sbjct: 316 GLTNLDALYLNSNQITDISL--LSGLTNLDALYLNSNQITD--ISPLLELTNLNYLILDN 371

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-----LLNLSQNCNLTDK 339
            +ITD   + L    NL  L +    +TD     I  LS LT     +LN +Q   +TD 
Sbjct: 372 NQITD--ISPLSGLTNLTILILDNNQITD-----ISPLSGLTNLGGLILNSNQ---ITD- 420

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
            +  +SGLT L  LN+++++IT   +  L  L NLR L L+   +
Sbjct: 421 -VSPLSGLTNLTVLNLNSNQITD--VSPLSGLTNLRRLHLKDNPI 462



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 187/362 (51%), Gaps = 37/362 (10%)

Query: 5   LSGLSN---LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           LSGL+N   L   + +  +     G+ +  GLI L    ++  + + G        +   
Sbjct: 138 LSGLTNLTVLNLNNNQITDISPLSGLTSLTGLI-LGGNQIKDVSPLSGLTNLTVLNLNNN 196

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            +          +D+ PLSGLT+L  L +  +++TD  I+ L GL  LT+L L    +T 
Sbjct: 197 QI----------TDISPLSGLTSLTVLILYSNQITD--ISSLSGLTSLTVLILSDNQITD 244

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             +  LS L +L  L LN  Q++D      S + +L  L L  N+ITD  +  L GLTNL
Sbjct: 245 --ISPLSGLTNLDALYLNNNQITD--ISPLSGLTNLDALYLNNNQITD--ISPLSGLTNL 298

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           ++L L++  I D  +  L+GL NL  L L+  Q+  + +  LSGLTNL+++ L+   I+D
Sbjct: 299 DALYLNNNQITD--ISPLSGLTNLDALYLNSNQI--TDISLLSGLTNLDALYLNSNQITD 354

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             +  L  L++L  L LD  QITD  ++ L+ LT LT L L   +ITD   + L    NL
Sbjct: 355 --ISPLLELTNLNYLILDNNQITD--ISPLSGLTNLTILILDNNQITD--ISPLSGLTNL 408

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
             L +    +TD  V  +  L++LT+LNL+ N  +TD  +  +SGLT L  L++ ++ I 
Sbjct: 409 GGLILNSNQITD--VSPLSGLTNLTVLNLNSN-QITD--VSPLSGLTNLRRLHLKDNPIP 463

Query: 362 SA 363
             
Sbjct: 464 QP 465


>gi|46447466|ref|YP_008831.1| hypothetical protein pc1832 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401107|emb|CAF24556.1| hypothetical protein pc1832 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 456

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 98/171 (57%), Gaps = 5/171 (2%)

Query: 229 LESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA- 285
           +E++N S    ++D  L  L    +LK L+L +    TD GLA LT LT L HLDL G  
Sbjct: 225 IEALNFSNNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCF 284

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           R+TD+G A+L     L+ L + G  LTDAG+ H+K L +L  L+L +  NLTD  L  + 
Sbjct: 285 RVTDTGLAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLR 344

Query: 346 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 394
            L  L  LN++N   IT  GL HL PL  L+ L L  C K+T N + RL+S
Sbjct: 345 PLVALQHLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRS 395



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 124/239 (51%), Gaps = 28/239 (11%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 107
             L+ LK    L+ L+++ C   TD+ +  L+ LT L+ L ++ C +VTD+G+A+L  L 
Sbjct: 239 AHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCFRVTDTGLAHLSPLV 298

Query: 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
            L  LNL GC +T A L  L  L +L +L+L RC                         +
Sbjct: 299 ALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCW-----------------------NL 335

Query: 168 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSG 225
           TD  L HL+ L  L+ LNL +C  I D GL +LT L  LK L+L    ++  +GL  L  
Sbjct: 336 TDAGLAHLRPLVALQHLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRS 395

Query: 226 LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 282
           L  L+ +NLS  + ++D  L  L  L +L+ L+L +  ++TD GLA    L   THLDL
Sbjct: 396 LVALQHLNLSGCSYLTDAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 117/217 (53%), Gaps = 11/217 (5%)

Query: 175 LKGLTN-LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLES 231
           LK  +N +E+LN  ++  + D  L+ L    NLK L+L +      +GL HL+ LT L+ 
Sbjct: 218 LKYFSNEIEALNFSNNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQH 277

Query: 232 INLSFTG---ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARI 287
           ++L  TG   ++D  L  L+ L +L+ LNL    +TD GL  L  L  L HLDL     +
Sbjct: 278 LDL--TGCFRVTDTGLAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNL 335

Query: 288 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           TD+G A+LR    L+ L +     +TD G+ H+  L +L  L+L Q   LT   L  +  
Sbjct: 336 TDAGLAHLRPLVALQHLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRS 395

Query: 347 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 382
           L  L  LN+S  S +T AGL HL+PL  L+ L L +C
Sbjct: 396 LVALQHLNLSGCSYLTDAGLAHLRPLVALQHLDLANC 432



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 195
           N   L+D          +LKVL+L   +N  TD  L HL  LT L+ L+L  C  + D G
Sbjct: 232 NNADLTDAHLLALKNCKNLKVLDLQECWN-FTDAGLAHLTPLTALQHLDLTGCFRVTDTG 290

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 254
           L +L+ L  L+ L L    +  +GL HL  L  L+ ++L     ++D  L  L  L +L+
Sbjct: 291 LAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQ 350

Query: 255 SLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGL 311
            LNL +   ITD GLA LT L  L HLDL    ++T +G A LR+   L+ L + G   L
Sbjct: 351 HLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYL 410

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
           TDAG+ H++ L +L  L+L+    LTD  L     L     L++
Sbjct: 411 TDAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 7/243 (2%)

Query: 1   MTENLSGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLM 58
             E L   SN + +L+F  N  +T   + A     NL  LDL+ C      GL +L  L 
Sbjct: 214 FEEILKYFSNEIEALNFSNNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLT 273

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
            L+ L++  C  +TD+ +  LS L  L+ L +    +TD+G+ +LK L  L  L+L  C 
Sbjct: 274 ALQHLDLTGCFRVTDTGLAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCW 333

Query: 119 -VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHL 175
            +T A L  L  L +L +LNL  C+ ++D G    + + +LK L+L    ++T   L  L
Sbjct: 334 NLTDAGLAHLRPLVALQHLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARL 393

Query: 176 KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 233
           + L  L+ LNL  C  + D GL +L  L  L+ L+L++  ++  +GL H   L     ++
Sbjct: 394 RSLVALQHLNLSGCSYLTDAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLD 453

Query: 234 LSF 236
           L +
Sbjct: 454 LRW 456


>gi|168701211|ref|ZP_02733488.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 702

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 195/441 (44%), Gaps = 56/441 (12%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 66
           GL++L  LSF R   +    +K  A    L  L LER      G+ +L  +  LE+L++ 
Sbjct: 195 GLTHL-DLSFSR---VGDDDLKLLAAFPKLKSLRLERTQVTDAGMKHLAAVEGLEALDLS 250

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
               +TD+ +K L+GL NL++L +  ++VT +G+    G   LT L L G  V AA +  
Sbjct: 251 RLR-VTDAGLKELAGLKNLRALTLLFTQVTGAGLRPFAG-AGLTHLALSGSKVKAADVAD 308

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           + A  +L  L +   +   D   + + +  L+ L+   + +  + L  L G + LE+++L
Sbjct: 309 VVACRALAALAVE-GRWPADAVAQLAGLPELRSLHFQSDLLDGKVLAELSGASKLEAVHL 367

Query: 187 DSCGIGDEGLVNL-------------------TGLCNLKCLELSDTQVGSSGLRHLSGLT 227
            +  + D+ L  L                    G   +  L+LS   V  +GL+ L+   
Sbjct: 368 AT--VTDDALAGLRRAGKLHTIPQARAERGRPAGPDEVVHLDLSGQPVTGAGLKELTVFR 425

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-----DARQITDTGLAALTSLTGLTHLDL 282
           NL+++ L  T ++ G +  LA L  L +L L     D R +T   +  L +L  L  L L
Sbjct: 426 NLDTLVLRNTRVA-GGIGALADLRKLSALTLPLYGGDDRAVTPAEMRRLAALDTLEELHL 484

Query: 283 FGARITDSGAAY-----------------LRNF---KNLRSLEICGGGLTDAGVKHIKDL 322
            G  +     A                  LR F   K+LR+L   G G+TD G   +  +
Sbjct: 485 HGVLVPGMARAVASIPNLTTLSGTFQDTDLREFPALKHLRALMTGGAGITDEGAWDVARM 544

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
             L  ++LS    LTD     ++ L  L  L +S + +T  G++ L  +K LR+L L   
Sbjct: 545 KRLECVSLSDTRRLTDAGARDLAALPNLKHLCLSRTGVTDEGVQVLAGVKTLRTLWLSEI 604

Query: 383 KVTANDIKRLQSRDLPNLVSF 403
           KV    +  L     P LV+ 
Sbjct: 605 KVGPAGVAALGRH--PGLVAL 623



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 11/223 (4%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-----EGCPVTAAC 123
             +T + +K L+   NL +L +  ++V   GI  L  L+KL+ L L     +   VT A 
Sbjct: 411 QPVTGAGLKELTVFRNLDTLVLRNTRVA-GGIGALADLRKLSALTLPLYGGDDRAVTPAE 469

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           +  L+AL +L  L+L+   L        + I +L  L+  F    D  L     L +L +
Sbjct: 470 MRRLAALDTLEELHLHGV-LVPGMARAVASIPNLTTLSGTFQ---DTDLREFPALKHLRA 525

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDG 242
           L     GI DEG  ++  +  L+C+ LSDT+ +  +G R L+ L NL+ + LS TG++D 
Sbjct: 526 LMTGGAGITDEGAWDVARMKRLECVSLSDTRRLTDAGARDLAALPNLKHLCLSRTGVTDE 585

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
            ++ LAG+ +L++L L   ++   G+AAL    GL  LDL GA
Sbjct: 586 GVQVLAGVKTLRTLWLSEIKVGPAGVAALGRHPGLVALDLSGA 628



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 132/293 (45%), Gaps = 45/293 (15%)

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 209
           + +KI ++  + L  +  T   L  L     L  L+L    +GD+ L  L     LK L 
Sbjct: 165 EIAKIDNVTYIGLSSSRDTGAKLRALAAAKGLTHLDLSFSRVGDDDLKLLAAFPKLKSLR 224

Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 269
           L  TQV  +G++HL+ +  LE+++LS   ++D  L++LAGL +L++L L   Q+T  GL 
Sbjct: 225 LERTQVTDAGMKHLAAVEGLEALDLSRLRVTDAGLKELAGLKNLRALTLLFTQVTGAGLR 284

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-----AGVKHIK---- 320
                 GLTHL L G+++  +  A +   + L +L + G    D     AG+  ++    
Sbjct: 285 PFAG-AGLTHLALSGSKVKAADVADVVACRALAALAVEGRWPADAVAQLAGLPELRSLHF 343

Query: 321 -----------DLSSLTLLNLSQNCNLTDKTLELI-------------------SGLTGL 350
                      +LS  + L       +TD  L  +                   +G   +
Sbjct: 344 QSDLLDGKVLAELSGASKLEAVHLATVTDDALAGLRRAGKLHTIPQARAERGRPAGPDEV 403

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-----DIKRLQSRDLP 398
           V L++S   +T AGL+ L   +NL +L L + +V        D+++L +  LP
Sbjct: 404 VHLDLSGQPVTGAGLKELTVFRNLDTLVLRNTRVAGGIGALADLRKLSALTLP 456



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 179/427 (41%), Gaps = 65/427 (15%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAG--LINL------VKL----DLERCTRIHG- 49
           + L+GL NL +L+      +T  G++ FAG  L +L      VK     D+  C  +   
Sbjct: 260 KELAGLKNLRALTLLFTQ-VTGAGLRPFAGAGLTHLALSGSKVKAADVADVVACRALAAL 318

Query: 50  ---------GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 100
                     +  L GL +L SL+ +  + +    +  LSG + L+++ ++   VTD  +
Sbjct: 319 AVEGRWPADAVAQLAGLPELRSLHFQ-SDLLDGKVLAELSGASKLEAVHLAT--VTDDAL 375

Query: 101 AYLK-------------------GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           A L+                   G  ++  L+L G PVT A L  L+   +L  L L   
Sbjct: 376 AGLRRAGKLHTIPQARAERGRPAGPDEVVHLDLSGQPVTGAGLKELTVFRNLDTLVLRNT 435

Query: 142 QLSDDGCEKFSKIGSLKVLNLGF-----NEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           +++  G    + +  L  L L         +T   +  L  L  LE L+L   G+   G+
Sbjct: 436 RVAG-GIGALADLRKLSALTLPLYGGDDRAVTPAEMRRLAALDTLEELHLH--GVLVPGM 492

Query: 197 VN-LTGLCNLKCLE--LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
              +  + NL  L     DT      LR    L +L ++     GI+D     +A +  L
Sbjct: 493 ARAVASIPNLTTLSGTFQDTD-----LREFPALKHLRALMTGGAGITDEGAWDVARMKRL 547

Query: 254 KSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           + ++L D R++TD G   L +L  L HL L    +TD G   L   K LR+L +    + 
Sbjct: 548 ECVSLSDTRRLTDAGARDLAALPNLKHLCLSRTGVTDEGVQVLAGVKTLRTLWLSEIKVG 607

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 372
            AGV  +     L  L+LS          E ++G+T L  LN++ +      L  L  L 
Sbjct: 608 PAGVAALGRHPGLVALDLSGAPR---GEAEPLAGITTLEYLNLAGALTGERTLAALAKLP 664

Query: 373 NLRSLTL 379
           +LR L L
Sbjct: 665 HLRVLHL 671


>gi|428163352|gb|EKX32427.1| hypothetical protein GUITHDRAFT_121393 [Guillardia theta CCMP2712]
          Length = 1894

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 177/382 (46%), Gaps = 3/382 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            +GL++L +L +  +N +T+     F GL +L  L L              GL  L++L 
Sbjct: 470 FNGLASLQTL-YLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTLY 528

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N +T       +GL +L++L +S +++T        GL  L  L L    +T+   
Sbjct: 529 LS-GNELTSVPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSSNELTSIPE 587

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
              + L SL YL L+  +L+      F+ + SL+ L L +NE+T        GL +L++L
Sbjct: 588 TVFAGLASLQYLYLSSNKLTSVPETVFAGLASLQTLYLSYNELTSVPETVFNGLASLQTL 647

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
            L    +         GL +L+ L L D ++ S      +GL +L S++L F  ++    
Sbjct: 648 YLSYNKLTSVPATVFAGLASLRSLGLYDNKLTSVPATVFAGLASLRSLSLDFNELTSIPE 707

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
              AGL+SL++L L   ++T         L  L +L L   ++T           ++++L
Sbjct: 708 TVFAGLTSLQTLYLYDNELTSVPETVFNGLASLQYLYLDNNKLTSIPETVFAGLASVQTL 767

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
            + G  LT         L+SL  LN+S N  LT     +  GL  L +L++S +++TS  
Sbjct: 768 YLSGNELTSVPETVFNGLASLQYLNVSSN-ELTSVPETVFDGLASLQTLDLSYNKLTSVP 826

Query: 365 LRHLKPLKNLRSLTLESCKVTA 386
                 L +LRSL L++ ++T+
Sbjct: 827 ETVFAGLASLRSLYLDNNELTS 848



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 148/318 (46%), Gaps = 1/318 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N +T       +GL +L+ L +S +K+T        GL  + +L L G  +T+      +
Sbjct: 100 NKLTSVPATVFAGLASLQYLYLSSNKLTSIPETVFAGLASIRVLILSGNELTSVPETVFA 159

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L SL YL L+  +L+      F+ + SL+ L L  N++T        GL +L SL LD+
Sbjct: 160 GLASLQYLYLDNNKLTSVPATVFNGLASLQTLYLSSNKLTSVPETVFNGLASLRSLYLDN 219

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             +         GL +L+ L L D ++ S      +GL +L+++ LS+  ++        
Sbjct: 220 NELTSVPETVFAGLASLQTLYLYDNELTSIPATVFAGLASLQTLYLSYNKLTSVPETVFD 279

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
           GL+SL+SL L   ++T         L  L +L L   ++T   A       +L++L + G
Sbjct: 280 GLASLRSLYLSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLSG 339

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
             LT         L+SL  L LS N  LT     + +GL  L +L +S++++TS      
Sbjct: 340 NELTSVPETVFTGLASLQTLYLSSN-KLTSVPETVFNGLASLQTLYLSSNKLTSVPATVF 398

Query: 369 KPLKNLRSLTLESCKVTA 386
             L +L+ L L   ++T+
Sbjct: 399 AGLASLQYLYLYDNELTS 416



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 172/382 (45%), Gaps = 7/382 (1%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLN 64
           GL++L SL +   N +T+     F GL +L  L L   + T +   +    GL  L++L 
Sbjct: 280 GLASLRSL-YLSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPATV--FAGLTSLQTLY 336

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N +T       +GL +L++L +S +K+T        GL  L  L L    +T+   
Sbjct: 337 LS-GNELTSVPETVFTGLASLQTLYLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPA 395

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
              + L SL YL L   +L+      F+ + SL+ L L  N++T        GL +L++L
Sbjct: 396 TVFAGLASLQYLYLYDNELTSIPATVFAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTL 455

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
            L S  +         GL +L+ L L D ++ S      +GL +L+++ LS   ++    
Sbjct: 456 YLSSNKLTSVPATVFNGLASLQTLYLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPE 515

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
              AGL+SL++L L   ++T         L  L  L L G  +T           +L++L
Sbjct: 516 TVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTL 575

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
            +    LT         L+SL  L LS N  LT     + +GL  L +L +S + +TS  
Sbjct: 576 YLSSNELTSIPETVFAGLASLQYLYLSSN-KLTSVPETVFAGLASLQTLYLSYNELTSVP 634

Query: 365 LRHLKPLKNLRSLTLESCKVTA 386
                 L +L++L L   K+T+
Sbjct: 635 ETVFNGLASLQTLYLSYNKLTS 656



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 174/384 (45%), Gaps = 7/384 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
            +GL++L +L +  +N +T+     FAGL +L  L L     T I   +    GL  L+S
Sbjct: 374 FNGLASLQTL-YLSSNKLTSVPATVFAGLASLQYLYLYDNELTSIPATV--FAGLTSLQS 430

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L +   N +T        GL +L++L +S +K+T        GL  L  L L    +T+ 
Sbjct: 431 LYLS-SNKLTSVPETVFDGLASLQTLYLSSNKLTSVPATVFNGLASLQTLYLYDNELTSI 489

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
                + L SL  L L+  +L+      F+ + SL+ L L  NE+T        GL +L+
Sbjct: 490 PATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQ 549

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           +L L    +         GL +L+ L LS  ++ S      +GL +L+ + LS   ++  
Sbjct: 550 TLYLSGNELTSVPETVFAGLASLQTLYLSSNELTSIPETVFAGLASLQYLYLSSNKLTSV 609

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
                AGL+SL++L L   ++T         L  L  L L   ++T   A       +LR
Sbjct: 610 PETVFAGLASLQTLYLSYNELTSVPETVFNGLASLQTLYLSYNKLTSVPATVFAGLASLR 669

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SL +    LT         L+SL  L+L  N  LT     + +GLT L +L + ++ +TS
Sbjct: 670 SLGLYDNKLTSVPATVFAGLASLRSLSLDFN-ELTSIPETVFAGLTSLQTLYLYDNELTS 728

Query: 363 AGLRHLKPLKNLRSLTLESCKVTA 386
                   L +L+ L L++ K+T+
Sbjct: 729 VPETVFNGLASLQYLYLDNNKLTS 752



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 172/382 (45%), Gaps = 3/382 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            +GL++L +L +  +N +T+     F GL +L  L L+             GL  L++L 
Sbjct: 182 FNGLASLQTL-YLSSNKLTSVPETVFNGLASLRSLYLDNNELTSVPETVFAGLASLQTLY 240

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           + + N +T       +GL +L++L +S +K+T        GL  L  L L    +T+   
Sbjct: 241 L-YDNELTSIPATVFAGLASLQTLYLSYNKLTSVPETVFDGLASLRSLYLSYNELTSVPE 299

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
                L SL YL L+  +L+      F+ + SL+ L L  NE+T        GL +L++L
Sbjct: 300 TVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLSGNELTSVPETVFTGLASLQTL 359

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
            L S  +         GL +L+ L LS  ++ S      +GL +L+ + L    ++    
Sbjct: 360 YLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATVFAGLASLQYLYLYDNELTSIPA 419

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
              AGL+SL+SL L + ++T         L  L  L L   ++T   A       +L++L
Sbjct: 420 TVFAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYLSSNKLTSVPATVFNGLASLQTL 479

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
            +    LT         L+SL  L LS N  LT     + +GL  L +L +S + +TS  
Sbjct: 480 YLYDNELTSIPATGFNGLASLQTLYLSSN-ELTSIPETVFAGLASLQTLYLSGNELTSVP 538

Query: 365 LRHLKPLKNLRSLTLESCKVTA 386
                 L +L++L L   ++T+
Sbjct: 539 ETVFAGLASLQTLYLSGNELTS 560



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 177/401 (44%), Gaps = 31/401 (7%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLES 62
             +GL++L SL    +N +T+     FAGL +L  + LD    T I   +    GL  L++
Sbjct: 662  FAGLASLRSLGLY-DNKLTSVPATVFAGLASLRSLSLDFNELTSIPETV--FAGLTSLQT 718

Query: 63   LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
            L + + N +T       +GL +L+ L +  +K+T        GL  +  L L G  +T+ 
Sbjct: 719  LYL-YDNELTSVPETVFNGLASLQYLYLDNNKLTSIPETVFAGLASVQTLYLSGNELTSV 777

Query: 123  CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
                 + L SL YLN++  +L+      F  + SL+ L+L +N++T        GL +L 
Sbjct: 778  PETVFNGLASLQYLNVSSNELTSVPETVFDGLASLQTLDLSYNKLTSVPETVFAGLASLR 837

Query: 183  SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL------------------- 223
            SL LD+  +         GL +L  L+L   ++ S  L                      
Sbjct: 838  SLYLDNNELTSVPETVFAGLDSLWRLDLHSNRLASLALSLFYDCHDLMELYLNNNLLSGL 897

Query: 224  -----SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
                  GL +LE++ L    ++D S    A LSSL +L L   +++     A   L  LT
Sbjct: 898  LPGSLDGLVSLEALYLHSNQLADISSDVFAQLSSLTTLTLHNNRLSSLSPGAFAGLARLT 957

Query: 279  HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
             L +   R+T       +    L +L++    LT      +  L ++  L+LS N  L D
Sbjct: 958  TLSIHHNRLTRLSPGAFQGLSTLATLDLHDNHLTSLTAGALTGLDAMRALDLSSN-KLAD 1016

Query: 339  KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
               + +  LTGL +L++ ++++TS     L+PL  L  L L
Sbjct: 1017 LPAQALHNLTGLRNLSLDDNQLTSLSAGVLEPLAGLEYLWL 1057



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 130/290 (44%), Gaps = 3/290 (1%)

Query: 97  DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 156
           D G+        LT + L G  +T+      + L SL YL L+  +L+      F+ + S
Sbjct: 82  DEGV--FNNTWSLTEIRLSGNKLTSVPATVFAGLASLQYLYLSSNKLTSIPETVFAGLAS 139

Query: 157 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
           ++VL L  NE+T        GL +L+ L LD+  +         GL +L+ L LS  ++ 
Sbjct: 140 IRVLILSGNELTSVPETVFAGLASLQYLYLDNNKLTSVPATVFNGLASLQTLYLSSNKLT 199

Query: 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276
           S      +GL +L S+ L    ++       AGL+SL++L L   ++T         L  
Sbjct: 200 SVPETVFNGLASLRSLYLDNNELTSVPETVFAGLASLQTLYLYDNELTSIPATVFAGLAS 259

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           L  L L   ++T           +LRSL +    LT         L+SL  L LS N  L
Sbjct: 260 LQTLYLSYNKLTSVPETVFDGLASLRSLYLSYNELTSVPETVFDGLASLQYLYLSSN-KL 318

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
           T     + +GLT L +L +S + +TS        L +L++L L S K+T+
Sbjct: 319 TSVPATVFAGLTSLQTLYLSGNELTSVPETVFTGLASLQTLYLSSNKLTS 368



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 176/383 (45%), Gaps = 7/383 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
            +GL++L  L +  +N +T+     FAGL +L  L L     T +   + N  GL  L++
Sbjct: 590 FAGLASLQYL-YLSSNKLTSVPETVFAGLASLQTLYLSYNELTSVPETVFN--GLASLQT 646

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L + + N +T       +GL +L+SL +  +K+T        GL  L  L+L+   +T+ 
Sbjct: 647 LYLSY-NKLTSVPATVFAGLASLRSLGLYDNKLTSVPATVFAGLASLRSLSLDFNELTSI 705

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
                + L SL  L L   +L+      F+ + SL+ L L  N++T        GL +++
Sbjct: 706 PETVFAGLTSLQTLYLYDNELTSVPETVFNGLASLQYLYLDNNKLTSIPETVFAGLASVQ 765

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           +L L    +         GL +L+ L +S  ++ S       GL +L++++LS+  ++  
Sbjct: 766 TLYLSGNELTSVPETVFNGLASLQYLNVSSNELTSVPETVFDGLASLQTLDLSYNKLTSV 825

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
                AGL+SL+SL LD  ++T         L  L  LDL   R+     +   +  +L 
Sbjct: 826 PETVFAGLASLRSLYLDNNELTSVPETVFAGLDSLWRLDLHSNRLASLALSLFYDCHDLM 885

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            L +    L+      +  L SL  L L  N  L D + ++ + L+ L +L + N+R++S
Sbjct: 886 ELYLNNNLLSGLLPGSLDGLVSLEALYLHSN-QLADISSDVFAQLSSLTTLTLHNNRLSS 944

Query: 363 AGLRHLKPLKNLRSLTLESCKVT 385
                   L  L +L++   ++T
Sbjct: 945 LSPGAFAGLARLTTLSIHHNRLT 967



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 176/392 (44%), Gaps = 14/392 (3%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
             +GL++L  L +  NN +T+     FAGL ++  L L     T +   + N  GL  L+ 
Sbjct: 734  FNGLASLQYL-YLDNNKLTSIPETVFAGLASVQTLYLSGNELTSVPETVFN--GLASLQY 790

Query: 63   LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
            LN+   N +T        GL +L++L +S +K+T        GL  L  L L+   +T+ 
Sbjct: 791  LNVS-SNELTSVPETVFDGLASLQTLDLSYNKLTSVPETVFAGLASLRSLYLDNNELTSV 849

Query: 123  CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
                 + L SL+ L+L+  +L+      F     L  L L  N ++      L GL +LE
Sbjct: 850  PETVFAGLDSLWRLDLHSNRLASLALSLFYDCHDLMELYLNNNLLSGLLPGSLDGLVSLE 909

Query: 183  SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            +L L S  + D        L +L  L L + ++ S      +GL  L ++++    ++  
Sbjct: 910  ALYLHSNQLADISSDVFAQLSSLTTLTLHNNRLSSLSPGAFAGLARLTTLSIHHNRLTRL 969

Query: 243  SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            S     GLS+L +L+L    +T     ALT L  +  LDL   ++ D  A  L N   LR
Sbjct: 970  SPGAFQGLSTLATLDLHDNHLTSLTAGALTGLDAMRALDLSSNKLADLPAQALHNLTGLR 1029

Query: 303  SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN---VSNSR 359
            +L +    LT      ++ L+ L  L LS N     +  E+ +GL  L SL    + ++ 
Sbjct: 1030 NLSLDDNQLTSLSAGVLEPLAGLEYLWLSHN-----RLAEVPAGLGSLASLRYLLLDHNP 1084

Query: 360  ITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
            +TS  +  L    +LR+L + S    A   +R
Sbjct: 1085 LTSLDVSLLDNKPDLRALGVNSDAFKALSAQR 1116



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 159/358 (44%), Gaps = 34/358 (9%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
             + LS+LT+L+   NN +++    AFAGL  L  L +   R TR+  G    +GL  L +
Sbjct: 926  FAQLSSLTTLTLH-NNRLSSLSPGAFAGLARLTTLSIHHNRLTRLSPG--AFQGLSTLAT 982

Query: 63   LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
            L++   N +T      L+GL  +++L +S +K+ D     L  L  L  L+L+   +T+ 
Sbjct: 983  LDLH-DNHLTSLTAGALTGLDAMRALDLSSNKLADLPAQALHNLTGLRNLSLDDNQLTSL 1041

Query: 123  CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
                L  L  L YL L+  +L++        + SL+ L L  N +T   +  L    +L 
Sbjct: 1042 SAGVLEPLAGLEYLWLSHNRLAEVPA-GLGSLASLRYLLLDHNPLTSLDVSLLDNKPDLR 1100

Query: 183  SLNLDS---CGIGDEGLVNLTGLCNLKCLELSDTQVGSSG---LRHLSGLTNLESINLSF 236
            +L ++S     +  +    L  L  L   +  D Q  S+    L  LS LT L       
Sbjct: 1101 ALGVNSDAFKALSAQRPSVLETLLELWLCKSDDDQDQSAAGELLDKLSQLTGLYLFGFDQ 1160

Query: 237  TGISDGSLRKLAG---------------------LSSLKSLNLDARQITDTGLAALTSLT 275
            + I  G L  L+                      L SL+SL L    +T   +AAL++L+
Sbjct: 1161 SLIHAGMLSSLSSVRVLWLEDNLLDQLPPGTFDQLPSLQSLYLIHNGLTAVPVAALSNLS 1220

Query: 276  GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            GLT L +    IT   A   R+   LR+L++ G  ++    +   +L ++  L+LS N
Sbjct: 1221 GLTELHIVNDGITRVPAGAFRSLSGLRTLDLSGNLISSIEAEAFDNLDNVRQLDLSNN 1278


>gi|449019210|dbj|BAM82612.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]
          Length = 2325

 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 129/441 (29%), Positives = 197/441 (44%), Gaps = 99/441 (22%)

Query: 60   LESLNIKWCNCITDSDMKPL--SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 117
            LE+L++  C  + D  ++PL      +L+ + +S +++T + +  L  L +L  L+L GC
Sbjct: 1874 LETLSVAHCFRLGDRSLRPLLRQHRQSLRVVDLSYTRITGAVLQELGALPQLQSLSLCGC 1933

Query: 118  PVTAAC-LDSLSALG--------SLFYLNLNRC-QLSDDG-------------------- 147
              T +   D+ +  G         L +L+L +C QL  DG                    
Sbjct: 1934 GETLSVESDAATRFGEELALPGKQLVHLDLGKCAQLVTDGFLAALAGLASGRRTHHQYNR 1993

Query: 148  ---------CEK--------FSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSC 189
                      E+        +S   +L+ L++    +TD  L H ++    LE L+L  C
Sbjct: 1994 QQYQQNPAAVERLVHATHGVYSSRDTLRSLSVHGCRLTDRSLSHYVRLFQGLERLDLSQC 2053

Query: 190  G-IGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKL 247
              I D GL +L  L +L+ L+L+DT V S+ G   L+ L  L  ++LS+T +     + L
Sbjct: 2054 RLITDAGLEHLQSLKSLRELDLADTNVTSAVGASLLARLRQLRRLDLSYTAVQSNITKSL 2113

Query: 248  AGLSSLKSLNLDARQITDTGLA-------------------ALTSLT------------- 275
            + L  L+ L LDAR I+D  L                    AL+S T             
Sbjct: 2114 STLEQLEWLGLDARLISDDALQVEENEASPEPVSSRDVAAPALSSATVAVHLHRRIGLPR 2173

Query: 276  GLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQN 333
             L HLDLFGA ITD G +YL +    + SLE+C G LTDA ++ I + L  L  LN+SQN
Sbjct: 2174 HLRHLDLFGAHITDRGMSYLVQACPYVESLEVCSGALTDAALRLIAQHLPYLRALNISQN 2233

Query: 334  CNLTDKTLELISGLTG----------LVSLNVSNSRITSAGLRHLKP-LKNLRSLTLESC 382
              ++D  L   + L            L +LN++ + +T  GL  L P L  LR L +  C
Sbjct: 2234 MRISDAGLREYARLAQVQQDLGQPHLLETLNLAFTAVTWRGLAVLLPTLPYLRLLCVRGC 2293

Query: 383  KVTANDIKRLQS--RDLPNLV 401
               +     +QS  R  P LV
Sbjct: 2294 NKDSFSAVSVQSLERMRPGLV 2314


>gi|46445682|ref|YP_007047.1| hypothetical protein pc0048 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399323|emb|CAF22772.1| hypothetical protein pc0048 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 531

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 132/264 (50%), Gaps = 43/264 (16%)

Query: 158 KVLNLGFNEI-----------TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 205
           K+LN   NEI           TD  L+ LK   NL++L+L +C  + D+GL +LT L NL
Sbjct: 289 KILNYFSNEIEKLNFSENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNL 348

Query: 206 KCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           + L LS   ++ + GL H   L  L+ +NLS                           IT
Sbjct: 349 QYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAF-----------------------IT 385

Query: 265 DTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 322
           D GLA L  L  L +L+L G A ITD+G A+L+    L+ L + G   +TDAG+ H+  L
Sbjct: 386 DAGLAHLKPLVALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPL 445

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLTLES 381
            +L  L+LS   +LT+  LE ++ L  L  LN+S    +T AGL HL  L NL+ L L  
Sbjct: 446 VTLKHLDLSWCNSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNH 505

Query: 382 CKVTAN-DIKRLQSRDL---PNLV 401
           C+  A+   K    R L   PNL+
Sbjct: 506 CEHFADVRFKLTHFRTLLANPNLI 529



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 114/216 (52%), Gaps = 28/216 (12%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 107
             L+ LK    L++L+++ C+ +TD  +  L+ LTNL+ L +S C K+T+ G+A+ K L 
Sbjct: 312 AHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLAHFKSLI 371

Query: 108 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
            L  LNL GC  +T A L  L  L +L YLNL+ C                         
Sbjct: 372 ALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAF----------------------- 408

Query: 167 ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 224
           ITD  L HLK L  L+ LNL  C  I D GL +LT L  LK L+LS    + ++GL  L+
Sbjct: 409 ITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLA 468

Query: 225 GLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD 259
            L  L+ +NLS    +++  L  L  L++L+ LNL+
Sbjct: 469 SLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLN 504



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 110/185 (59%), Gaps = 5/185 (2%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWC 68
           NL +L  +  + +T  G+ +   L NL  L+L  C ++ + GL + K L+ L+ LN+  C
Sbjct: 322 NLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGC 381

Query: 69  NCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDS 126
             ITD+ +  L  L  L+ L +S C+ +TD+G+A+LK L  L  LNL GC  +T A L  
Sbjct: 382 AFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAH 441

Query: 127 LSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESL 184
           L+ L +L +L+L+ C  L++ G E+ + + +L+ LNL G   +T+  L HL  LTNL+ L
Sbjct: 442 LTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQL 501

Query: 185 NLDSC 189
           NL+ C
Sbjct: 502 NLNHC 506



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 31/231 (13%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           ++E LN      +TD+ +  L    NLK+L + +C  +TD G+A                
Sbjct: 297 EIEKLNFSENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLA---------------- 340

Query: 118 PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHL 175
                   SL++L +L YLNL+ C +L++ G   F  + +L+ LNL G   ITD  L HL
Sbjct: 341 --------SLTSLTNLQYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHL 392

Query: 176 KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 233
           K L  L+ LNL  C  I D GL +L  L  L+ L LS    +  +GL HL+ L  L+ ++
Sbjct: 393 KPLVALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLD 452

Query: 234 LSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 282
           LS+   +++  L +LA L +L+ LNL     +T+ GL  LTSLT L  L+L
Sbjct: 453 LSWCNSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNL 503



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 120/247 (48%), Gaps = 29/247 (11%)

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECL 172
           E   +T A L +L    +L  L+L  C  L+DDG    + + +L+ LNL   +++T++ L
Sbjct: 305 ENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGL 364

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLE 230
            H K L  L+ LNL  C  I D GL +L  L  L+ L LS    +  +GL HL  L  L+
Sbjct: 365 AHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLKPLVALQ 424

Query: 231 SINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARIT 288
            +NLS    I+D  L  L  L +LK L+L     +T+ GL  L SL  L HL+L      
Sbjct: 425 YLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHLNL------ 478

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
            SG  YL                T+AG+ H+  L++L  LNL+   +  D   +L    T
Sbjct: 479 -SGCIYL----------------TEAGLTHLTSLTNLQQLNLNHCEHFADVRFKLTHFRT 521

Query: 349 GLVSLNV 355
            L + N+
Sbjct: 522 LLANPNL 528


>gi|290972542|ref|XP_002669011.1| predicted protein [Naegleria gruberi]
 gi|284082551|gb|EFC36267.1| predicted protein [Naegleria gruberi]
          Length = 335

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 148/304 (48%), Gaps = 35/304 (11%)

Query: 70  CITDSDMKPLSG-----LTNLKSLQISCSKVTDSG---------IAYLKG---------- 105
           CI  S++ P S      L+NL +L I+   + D G         I YL+           
Sbjct: 22  CINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQLKQIKYLRACENGIGSIGA 81

Query: 106 -----LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160
                ++ LTLL L G  +    L+S+  L  L YL+L   +++D G +  + +  L  L
Sbjct: 82  RNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLGENEITDQGLKSLNNLEKLVTL 141

Query: 161 NLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           NL  N+IT+ E + HLK LTNL+   + +  IG+EG   +  +  LK L ++D  + S G
Sbjct: 142 NLKNNKITNLETISHLK-LTNLD---VTTNKIGNEGAKYIAEMKRLKVLRINDNHITSDG 197

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
            + LSG+T L  I L    I D     +  L +L+ L+L    IT  GL  +  L  L  
Sbjct: 198 AKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLKGAGITGEGLKTICELINLRR 257

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L +   +I+D GA Y+    NL +L +C   +   G + I ++ SL  L++++N NLT  
Sbjct: 258 LHVSHNQISDLGAKYISGMNNLTALNVCDCNIGFEGAQFISNMQSLADLDITKN-NLTTN 316

Query: 340 TLEL 343
            ++L
Sbjct: 317 GIKL 320



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 156/326 (47%), Gaps = 31/326 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S  S LT L    ++ +T Q     A L NL  L + RC+    G  N+  L +++ L 
Sbjct: 12  ISNHSKLTELCIN-SSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQLKQIKYL- 69

Query: 65  IKWC-------------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSG 99
            + C                         N I D  ++ +  L+ L  L +  +++TD G
Sbjct: 70  -RACENGIGSIGARNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLGENEITDQG 128

Query: 100 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 159
           +  L  L+KL  LNL+   +T   L+++S L  L  L++   ++ ++G +  +++  LKV
Sbjct: 129 LKSLNNLEKLVTLNLKNNKITN--LETISHL-KLTNLDVTTNKIGNEGAKYIAEMKRLKV 185

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L +  N IT +    L G+T L  + L    IGDEG +++  L NL+ L+L    +   G
Sbjct: 186 LRINDNHITSDGAKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLKGAGITGEG 245

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
           L+ +  L NL  +++S   ISD   + ++G+++L +LN+    I   G   ++++  L  
Sbjct: 246 LKTICELINLRRLHVSHNQISDLGAKYISGMNNLTALNVCDCNIGFEGAQFISNMQSLAD 305

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLE 305
           LD+    +T +G    RN K  + L+
Sbjct: 306 LDITKNNLTTNGIKLCRNMKTSKKLK 331



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           E+T +    +  L+NL +L+++ C I D G  N++ L  +K L   +  +GS G R++  
Sbjct: 27  ELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQLKQIKYLRACENGIGSIGARNIGE 86

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           + NL  + LS   I D  L  +  LS L  L+L   +ITD GL +L +L  L  L+L   
Sbjct: 87  MKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLGENEITDQGLKSLNNLEKLVTLNLKNN 146

Query: 286 RITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
           +IT+    ++L+    L +L++    + + G K+I ++  L +L ++ N ++T    +++
Sbjct: 147 KITNLETISHLK----LTNLDVTTNKIGNEGAKYIAEMKRLKVLRINDN-HITSDGAKIL 201

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           SG+T L  + + ++ I   G   +  L NL  L L+   +T   +K +
Sbjct: 202 SGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLKGAGITGEGLKTI 249


>gi|159486717|ref|XP_001701384.1| hypothetical protein CHLREDRAFT_153692 [Chlamydomonas reinhardtii]
 gi|158271686|gb|EDO97500.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 293

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 11/162 (6%)

Query: 251 SSLKSLNLDARQI-------TDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKN 300
           S+L  LNL   ++       TD  L  ++ L+ LT LD+FG R+TD+GAA L      + 
Sbjct: 116 STLTHLNLTYTKVCVLRGTLTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAPALRG 175

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSR 359
           LRSLE CGGG+TDAG   +  L++LT LNLSQN  L D  +  L + L  L  L+++++ 
Sbjct: 176 LRSLECCGGGITDAGALCLARLTALTSLNLSQNPRLGDAGVRSLAAHLAELQVLSLNHTN 235

Query: 360 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 401
           +TSA LR L  L  LRSL L   +V+   + RL++R  P+L+
Sbjct: 236 VTSACLRELAQLPWLRSLALAGSRVSEAGVARLKARAHPDLI 277



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 11/137 (8%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT-LLNLEGC-----PVTAACL 124
           +TD+ ++ +S L+ L +L +   ++TD+G A L G   L  L +LE C        A CL
Sbjct: 135 LTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAPALRGLRSLECCGGGITDAGALCL 194

Query: 125 DSLSALGSLFYLNLNR-CQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             L+AL S   LNL++  +L D G     + +  L+VL+L    +T  CL  L  L  L 
Sbjct: 195 ARLTALTS---LNLSQNPRLGDAGVRSLAAHLAELQVLSLNHTNVTSACLRELAQLPWLR 251

Query: 183 SLNLDSCGIGDEGLVNL 199
           SL L    + + G+  L
Sbjct: 252 SLALAGSRVSEAGVARL 268



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 30/179 (16%)

Query: 151 FSKIGSLKVLNLGFNEI-------TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
           +    +L  LNL + ++       TD  L H+  L+ L +L++  C + D G   L G  
Sbjct: 112 WGPPSTLTHLNLTYTKVCVLRGTLTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAP 171

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQ 262
            L+                  GL +LE       GI+D     LA L++L SLNL    +
Sbjct: 172 ALR------------------GLRSLECCG---GGITDAGALCLARLTALTSLNLSQNPR 210

Query: 263 ITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
           + D G+ +L + L  L  L L    +T +    L     LRSL + G  +++AGV  +K
Sbjct: 211 LGDAGVRSLAAHLAELQVLSLNHTNVTSACLRELAQLPWLRSLALAGSRVSEAGVARLK 269


>gi|325106627|ref|YP_004267695.1| hypothetical protein Plabr_0042 [Planctomyces brasiliensis DSM
           5305]
 gi|324966895|gb|ADY57673.1| leucine-rich repeat-containing protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 526

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 135/283 (47%), Gaps = 1/283 (0%)

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           +L +S  +   S   +    + L  L+L  CP  +  L       +L  L    C +  D
Sbjct: 28  ALDLSAVRWDQSPEDFPALPENLQELDLTNCPCGSKILAQPEFQETLLKLKCQNCDIDFD 87

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
             E   ++ SL+ L+L    + D  +  L  L  L +  +    + D GL  +     LK
Sbjct: 88  TLELIGQLRSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLK 147

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            ++L+  ++  +GL HL GL +L  +NL  + ++  +L+ L  L  L+ L+L     T  
Sbjct: 148 SIDLNQNKLSEAGLCHLEGLVSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHH 207

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
           GL+ LT    L  L L G RI D G   L  F  L SL++ G  ++D  +K +  L  L 
Sbjct: 208 GLSFLTYFRRLRSLKLGGNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLK 267

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
            L +     ++D+ L+L++ ++ L++L+V  + +T +G++ L+
Sbjct: 268 RLYVP-GTAVSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLE 309



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 170/385 (44%), Gaps = 17/385 (4%)

Query: 25  QGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-L 82
           Q  + F  L  NL +LDL  C    G  +  +   +   L +K  NC  D D   L G L
Sbjct: 38  QSPEDFPALPENLQELDLTNCP--CGSKILAQPEFQETLLKLKCQNCDIDFDTLELIGQL 95

Query: 83  TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 142
            +L+ L +S + + D G+  L  L++L    +    VT   L  + A   L  ++LN+ +
Sbjct: 96  RSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQNK 155

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           LS+ G      + SL+ +NL  + +    L  L+ L  LE L+L +      GL  LT  
Sbjct: 156 LSEAGLCHLEGLVSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLTYF 215

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
             L+ L+L   ++   GL  L     LES++LS T ISD +++ LA L  LK L +    
Sbjct: 216 RRLRSLKLGGNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLYVPGTA 275

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
           ++D GL  LTS++ L  LD+    +T SG   L        ++     L  + V   +D+
Sbjct: 276 VSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSSHVIRSRDV 335

Query: 323 SSLTLLNLS-------------QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
             +   +L+             ++ +        +   + L SL ++   +    L+ LK
Sbjct: 336 LQMHGCHLTLSRSGDVIACQAGEDASPPIHWFSALESFSSLKSLELNRLALDGEQLQFLK 395

Query: 370 PLKNLRSLTLESCKVTANDIKRLQS 394
            +  L+SL L+ C      +  L+S
Sbjct: 396 NMSQLQSLALKQCTFPPEALSVLKS 420



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 152/352 (43%), Gaps = 41/352 (11%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +L GL +L  ++ RR+ ++    +K    L+ L KLDL      H GL  L    +L SL
Sbjct: 163 HLEGLVSLREVNLRRS-SVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLTYFRRLRSL 221

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
            +   N I D  + PL     L+SL +S + ++D  +  L  L +L  L + G  V+   
Sbjct: 222 KLG-GNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLYVPGTAVSDEG 280

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSK-------------------IGSLKVLNLGF 164
           L  L+++ +L  L++ +  ++  G ++  +                   I S  VL +  
Sbjct: 281 LQLLTSVSTLIALDVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSSHVIRSRDVLQMHG 340

Query: 165 NEIT---------------DECLVH----LKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
             +T                   +H    L+  ++L+SL L+   +  E L  L  +  L
Sbjct: 341 CHLTLSRSGDVIACQAGEDASPPIHWFSALESFSSLKSLELNRLALDGEQLQFLKNMSQL 400

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
           + L L         L  L  L  L  ++L  T +SD SL+ L  L SL +L L    +T 
Sbjct: 401 QSLALKQCTFPPEALSVLKSLNRLAWLDLRDTPVSDESLQALGELPSLSNLCLSRTGVTA 460

Query: 266 TGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
           TGL +L+S   L  L +    +I D     L  FKNL+ L+I G  +T+ G 
Sbjct: 461 TGLESLSSAPLLRDLVIKECGQIGDPAVLALEKFKNLKHLDIRGTNITEQGF 512



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 174/398 (43%), Gaps = 49/398 (12%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E LS L  L + +  +   +T  G++       L  +DL +      GL +L+GL+ L  
Sbjct: 114 EKLSKLEQLRTFAIAKTR-VTDNGLRYVKAFRFLKSIDLNQNKLSEAGLCHLEGLVSLRE 172

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           +N++  + +  + +K L  L  L+ L +  +  T  G+++L   ++L  L L G      
Sbjct: 173 VNLR-RSSVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLTYFRRLRSLKLGG------ 225

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
                           NR  + DDG     +   L+ L+L    I+D+ +  L  L  L+
Sbjct: 226 ----------------NR--IEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLK 267

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL----------SGLTNLESI 232
            L +    + DEGL  LT +  L  L++  T V  SG++ L          S   +L S 
Sbjct: 268 RLYVPGTAVSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSS 327

Query: 233 NLSFTGISDGSLRKLAG--LSSLKSLNLDARQITDTG------LAALTSLTGLTHLDLFG 284
           ++    I    + ++ G  L+  +S ++ A Q  +         +AL S + L  L+L  
Sbjct: 328 HV----IRSRDVLQMHGCHLTLSRSGDVIACQAGEDASPPIHWFSALESFSSLKSLELNR 383

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             +      +L+N   L+SL +         +  +K L+ L  L+L ++  ++D++L+ +
Sbjct: 384 LALDGEQLQFLKNMSQLQSLALKQCTFPPEALSVLKSLNRLAWLDL-RDTPVSDESLQAL 442

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
             L  L +L +S + +T+ GL  L     LR L ++ C
Sbjct: 443 GELPSLSNLCLSRTGVTATGLESLSSAPLLRDLVIKEC 480


>gi|290978242|ref|XP_002671845.1| predicted protein [Naegleria gruberi]
 gi|284085417|gb|EFC39101.1| predicted protein [Naegleria gruberi]
          Length = 439

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 158/339 (46%), Gaps = 5/339 (1%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIK 66
           L NLT +    +N I+ + +K F  L +L  L +  C  I   G   L  L +L  LNI 
Sbjct: 99  LKNLTRIDIS-DNEISDERVKHFGNLTHLTNLVI-NCNDIGVEGAKCLCQLNQLTRLNIG 156

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
             N +     K +S L NL  L I+ + + D G  ++  +++LT LNL    +       
Sbjct: 157 -NNSLETEGAKYISELKNLTKLDIARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLGAKF 215

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           +S +  L  L+++   +  +G ++ SK+  L  L +  N I DE  +H+  +  L +L++
Sbjct: 216 ISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTNLDI 275

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
               I  EG  ++  L  L  L +    +G +G +H+S + NL  + +    I       
Sbjct: 276 SRNDIDSEGAKSICELYQLTNLNICSNYIGETGAKHISEMNNLTILEIGSNEIGSEGAYH 335

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           ++ +  L  L + A  I + G   ++ +  LT LD++   I D G  ++   K L  L++
Sbjct: 336 ISRMHQLTRLMIFANDIGEKGAKHVSEMKQLTKLDIYDNNIGDEGTIHISEMKQLTYLDV 395

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
               +   G ++I+ L+ LT LN+  N + +D   ELI 
Sbjct: 396 SANNIGHEGAEYIRKLNRLTFLNVHYN-SFSDSESELIE 433



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 1/237 (0%)

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
           C+ F  + +L  +++  NEI+DE + H   LT+L +L ++   IG EG   L  L  L  
Sbjct: 93  CQIFECLKNLTRIDISDNEISDERVKHFGNLTHLTNLVINCNDIGVEGAKCLCQLNQLTR 152

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267
           L + +  + + G +++S L NL  ++++   I D   + +  +  L SLNL+   I   G
Sbjct: 153 LNIGNNSLETEGAKYISELKNLTKLDIARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLG 212

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
              ++ +  LT LD+    I   GA  +     L  L I    + D G  HI ++  LT 
Sbjct: 213 AKFISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTN 272

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           L++S+N ++  +  + I  L  L +LN+ ++ I   G +H+  + NL  L + S ++
Sbjct: 273 LDISRN-DIDSEGAKSICELYQLTNLNICSNYIGETGAKHISEMNNLTILEIGSNEI 328


>gi|386333663|ref|YP_006029833.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
 gi|334196112|gb|AEG69297.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
          Length = 629

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 147/308 (47%), Gaps = 2/308 (0%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
            L SLN+   N I D     L+    LKSL  S + + D+G+        LT LNL G  
Sbjct: 263 PLASLNLH-NNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNAVLTQLNLAGNM 321

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +  A   +L    SL  L+L+  +L D G +  +   SL  LNL  NEI D+    L   
Sbjct: 322 IGPAGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLTSLNLRHNEIGDDGTEALARN 381

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           T L+SLNL    IG  G   L G   L+ L+L    +   G   L+  T+L S++L    
Sbjct: 382 TTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNR 441

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           I D   R +A   +L  L+L    I D G  AL     LT L+L+G  + D GAA L + 
Sbjct: 442 IGDSGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAHH 501

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
             L SL +    +   G +H+   ++LT L+LS+N  +  +  + +S  T L +LNVS++
Sbjct: 502 PRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSEN-RIGPEGADALSLSTVLTTLNVSDN 560

Query: 359 RITSAGLR 366
            I   G R
Sbjct: 561 AIGEKGAR 568



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 173/402 (43%), Gaps = 51/402 (12%)

Query: 15  SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 74
           S R   A+T + +KA      +  LD+ RCT   G  V+  GL  L +            
Sbjct: 148 SVRFKGALTLEALKALP--PGVEHLDISRCT---GSGVSNAGLALLAT------------ 190

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
             +PL      KSL ++  ++   G   L     LT L+L GC +      +L+   S+ 
Sbjct: 191 --RPL------KSLSLNGIEIDAEGARLLATCTSLTSLSLTGCSIGDRAATALARSRSIA 242

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
            L+L+   +  DG    +    L  LNL  N I DE  + L     L+SLN  + GIGD 
Sbjct: 243 SLDLSVNMIGPDGARALAGA-PLASLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDA 301

Query: 195 G------------------LVNLTGLCNLKC------LELSDTQVGSSGLRHLSGLTNLE 230
           G                  ++   G   L+C      L+LS  ++G +G + L+   +L 
Sbjct: 302 GVLGFADNAVLTQLNLAGNMIGPAGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLT 361

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           S+NL    I D     LA  ++LKSLNL    I   G  AL   T L  LDL    I   
Sbjct: 362 SLNLRHNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPY 421

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
           GA+ L    +L SL +    + D+G + I    +LTLL+LS+N N+ D   + ++G   L
Sbjct: 422 GASALARNTSLASLHLGSNRIGDSGARAIATSRTLTLLDLSRN-NIHDAGAQALAGNGSL 480

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            SLN+  + +   G   L     L SL L   ++  N  + L
Sbjct: 481 TSLNLYGNEVDDDGAAALAHHPRLTSLNLGRNRIGPNGAQHL 522



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 150/374 (40%), Gaps = 50/374 (13%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I   G +A AG   L  L+L        G + L     L+SLN    N I D+ +   
Sbjct: 249 NMIGPDGARALAG-APLASLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGF 306

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           +    L  L ++ + +  +G   L+    LT L+L    +  A    L+A  SL  LNL 
Sbjct: 307 ADNAVLTQLNLAGNMIGPAGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLTSLNLR 366

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDE------------------CLVHLKGL--- 178
             ++ DDG E  ++  +LK LNL +N I                     C +   G    
Sbjct: 367 HNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASAL 426

Query: 179 ---TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
              T+L SL+L S  IGD                        SG R ++    L  ++LS
Sbjct: 427 ARNTSLASLHLGSNRIGD------------------------SGARAIATSRTLTLLDLS 462

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
              I D   + LAG  SL SLNL   ++ D G AAL     LT L+L   RI  +GA +L
Sbjct: 463 RNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAHHPRLTSLNLGRNRIGPNGAQHL 522

Query: 296 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
                L  L++    +   G   +   + LT LN+S N              T L SL+ 
Sbjct: 523 AKSATLTELDLSENRIGPEGADALSLSTVLTTLNVSDNAIGEKGARAFAEKSTSLTSLDA 582

Query: 356 SNSRITSAGLRHLK 369
            N+ +  AG + L+
Sbjct: 583 RNNGMGEAGAKMLE 596



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 133/318 (41%), Gaps = 28/318 (8%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I   G +A     +L +LDL        G   L     L SLN++  N I D   + L
Sbjct: 320 NMIGPAGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLTSLNLR-HNEIGDDGTEAL 378

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           +  T LKSL +S + +   G   L G   L  L+L  C +      +L+   SL  L+L 
Sbjct: 379 ARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLG 438

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
             ++ D G    +   +L +L+L  N I D     L G  +L SLNL    + D+G   L
Sbjct: 439 SNRIGDSGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAAL 498

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
                L  L L   ++G +G +H                        LA  ++L  L+L 
Sbjct: 499 AHHPRLTSLNLGRNRIGPNGAQH------------------------LAKSATLTELDLS 534

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKH 318
             +I   G  AL+  T LT L++    I + GA A+     +L SL+    G+ +AG K 
Sbjct: 535 ENRIGPEGADALSLSTVLTTLNVSDNAIGEKGARAFAEKSTSLTSLDARNNGMGEAGAKM 594

Query: 319 IKDLSSLTLLNLSQNCNL 336
           ++  + LT     QN N 
Sbjct: 595 LEANTRLT--GTQQNPNF 610


>gi|168701675|ref|ZP_02733952.1| hypothetical protein GobsU_19277 [Gemmata obscuriglobus UQM 2246]
          Length = 407

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 111/191 (58%), Gaps = 8/191 (4%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGI--------AYLKGLQKLTLLNLEGCPVTAA 122
           +TD+ +K L+ L  L +L +S ++VTD+G+            GL+ LT L+L    VT A
Sbjct: 46  VTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTFTRVTDA 105

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            + +L+AL +L  L+L+   ++D+G ++ + +G+L  L LG   +TD  +  L  L  L 
Sbjct: 106 GVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLT 165

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           +L+L S G+ D G   L+GL  L  L +S T V  +G++ L+ L NL  + L+ TG++D 
Sbjct: 166 ALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLELAATGVTDA 225

Query: 243 SLRKLAGLSSL 253
            +++LA L SL
Sbjct: 226 GVKELAALKSL 236



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 110/195 (56%), Gaps = 9/195 (4%)

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL--------SSLKSLNLD 259
           + LS T+V  +GL+ L+ L  L +++LS+T ++D  ++ LA L          L +L+L 
Sbjct: 39  VSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLT 98

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
             ++TD G+ AL +L  LT LDL    +TD G   L     L +L + G  +TDAGVK +
Sbjct: 99  FTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKEL 158

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             L  LT L+L  +  +TD   + +SGLTGL +L +S + +T AG++ L  LKNL  L L
Sbjct: 159 AALKGLTALDLG-SMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLEL 217

Query: 380 ESCKVTANDIKRLQS 394
            +  VT   +K L +
Sbjct: 218 AATGVTDAGVKELAA 232



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 14/203 (6%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-----------VHLKGLTNLESL 184
           ++L+  +++D G ++ + +  L  L+L + E+TD  +           + LKGLT   +L
Sbjct: 39  VSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLT---TL 95

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           +L    + D G+  L  L  L  L+LS T V   GL+ L+ L  L ++ L  T ++D  +
Sbjct: 96  DLTFTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGV 155

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           ++LA L  L +L+L +  +TD G   L+ LTGLT L +    +TD+G   L   KNL  L
Sbjct: 156 KELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHL 215

Query: 305 EICGGGLTDAGVKHIKDLSSLTL 327
           E+   G+TDAGVK +  L SL L
Sbjct: 216 ELAATGVTDAGVKELAALKSLVL 238



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/214 (34%), Positives = 113/214 (52%), Gaps = 17/214 (7%)

Query: 72  TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
           T  D +P++       + +S ++VTD+G+  L  L+ LT L+L    VT A + +L+AL 
Sbjct: 29  TTPDGRPVT------KVSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALK 82

Query: 132 --------SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
                    L  L+L   +++D G +  + + +L  L+L    +TDE L  L  L  L +
Sbjct: 83  ALTALGLKGLTTLDLTFTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNT 142

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           L L    + D G+  L  L  L  L+L    V  +G + LSGLT L ++ +SFTG++D  
Sbjct: 143 LGLGGTSVTDAGVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAG 202

Query: 244 LRKLAGLSSLKSLNLDARQITDTG---LAALTSL 274
           +++LA L +L  L L A  +TD G   LAAL SL
Sbjct: 203 VKELAALKNLTHLELAATGVTDAGVKELAALKSL 236



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 9/192 (4%)

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT--------NLESINLSFTGISDG 242
           + D GL  L  L  L  L+LS T+V  +G++ L+ L          L +++L+FT ++D 
Sbjct: 46  VTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTFTRVTDA 105

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            ++ LA L +L +L+L    +TD GL  L +L  L  L L G  +TD+G   L   K L 
Sbjct: 106 GVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLT 165

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           +L++   G+TDAG K +  L+ LT L +S    +TD  ++ ++ L  L  L ++ + +T 
Sbjct: 166 ALDLGSMGVTDAGAKELSGLTGLTALGMSFT-GVTDAGVKELAALKNLTHLELAATGVTD 224

Query: 363 AGLRHLKPLKNL 374
           AG++ L  LK+L
Sbjct: 225 AGVKELAALKSL 236



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 20/217 (9%)

Query: 13  SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 72
           SLSF R   +T  G+K  A L  L  LDL                 ++    +K    + 
Sbjct: 40  SLSFTR---VTDTGLKELAALKGLTTLDLS--------------YTEVTDAGVKALAALK 82

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
                 L GLT   +L ++ ++VTD+G+  L  L+ LT L+L    VT   L  L+ALG+
Sbjct: 83  ALTALGLKGLT---TLDLTFTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGA 139

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L L    ++D G ++ + +  L  L+LG   +TD     L GLT L +L +   G+ 
Sbjct: 140 LNTLGLGGTSVTDAGVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVT 199

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
           D G+  L  L NL  LEL+ T V  +G++ L+ L +L
Sbjct: 200 DAGVKELAALKNLTHLELAATGVTDAGVKELAALKSL 236



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 76/151 (50%), Gaps = 5/151 (3%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 66
           GL+ L  L+F R   +T  G+KA A L  L  LDL        GL  L  L  L +L + 
Sbjct: 91  GLTTL-DLTFTR---VTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLG 146

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
               +TD+ +K L+ L  L +L +    VTD+G   L GL  LT L +    VT A +  
Sbjct: 147 -GTSVTDAGVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKE 205

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
           L+AL +L +L L    ++D G ++ + + SL
Sbjct: 206 LAALKNLTHLELAATGVTDAGVKELAALKSL 236



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 7/145 (4%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L  LT+L    +  +T +G+K  A L  L  L L   +    G+  L  L  L +L+
Sbjct: 110 LAALKALTTLDLS-HTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLTALD 168

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +     +TD+  K LSGLT L +L +S + VTD+G+  L  L+ LT L L    VT A +
Sbjct: 169 LG-SMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLELAATGVTDAGV 227

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCE 149
             L+AL SL       CQ ++ GC 
Sbjct: 228 KELAALKSLVL-----CQANELGCH 247



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 9/126 (7%)

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK--------HIKDLSSLTLL 328
           +T + L   R+TD+G   L   K L +L++    +TDAGVK            L  LT L
Sbjct: 36  VTKVSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTL 95

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           +L+    +TD  ++ ++ L  L +L++S++ +T  GL+ L  L  L +L L    VT   
Sbjct: 96  DLTFT-RVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAG 154

Query: 389 IKRLQS 394
           +K L +
Sbjct: 155 VKELAA 160


>gi|254417119|ref|ZP_05030865.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
 gi|196176097|gb|EDX71115.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
          Length = 414

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 177/316 (56%), Gaps = 33/316 (10%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           +D++PLSGLTNL++L +  + ++D  ++ L  L  L  ++L    +T   ++ LS L +L
Sbjct: 86  TDIRPLSGLTNLRTLYLGSNLISD--VSPLVELTNLKKVDLSHNQITN--VNPLSGLTNL 141

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
            +L+L+R Q+++      S++ +L+ L+LG N+IT+  +  L GLTNLE LNL    I +
Sbjct: 142 EWLDLSRNQITN--VNPLSELTNLEWLDLGHNQITN--ISPLSGLTNLEFLNLSHNQITN 197

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
             ++  + L NLK + L++ Q+  + +  L+ LTNL  I+L+   I+  ++R L  L++L
Sbjct: 198 FRII--SALINLKDIALNNNQI--TDIYPLAELTNLRRISLNNNQIT--TVRPLVQLTNL 251

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
           +SL +   QITD  +  L+ LT L  L L   +ITD     L    NL  L +    +TD
Sbjct: 252 ESLYIGNNQITD--IRPLSQLTNLRQLALNHNQITDIRP--LSQLTNLTGLALSHNQITD 307

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL-NVSNSRITSAGLRHLKP-- 370
             V+ +  L++L  ++L+ N          I+ +T LV+L N++   + S  + ++ P  
Sbjct: 308 --VRPLSQLTNLEWIHLNYNQ---------ITNITPLVNLNNLTGLDLHSNQVTNVTPLV 356

Query: 371 -LKNLRSLTLESCKVT 385
            LKNL+ + L   ++T
Sbjct: 357 QLKNLKWIDLRFNQIT 372



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 121/248 (48%), Gaps = 61/248 (24%)

Query: 4   NLSGLSNLTSLSFRR--NNAITAQGMKAFAGLINL--VKLDLERCTRIH--GGLVNLK-- 55
           N+S LS LT+L F    +N IT    +  + LINL  + L+  + T I+    L NL+  
Sbjct: 175 NISPLSGLTNLEFLNLSHNQIT--NFRIISALINLKDIALNNNQITDIYPLAELTNLRRI 232

Query: 56  --------------GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 101
                          L  LESL I   N ITD  ++PLS LTNL+ L ++ +++TD    
Sbjct: 233 SLNNNQITTVRPLVQLTNLESLYIG-NNQITD--IRPLSQLTNLRQLALNHNQITD---- 285

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161
            ++ L +LT  NL G                   L L+  Q++D      S++ +L+ ++
Sbjct: 286 -IRPLSQLT--NLTG-------------------LALSHNQITD--VRPLSQLTNLEWIH 321

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
           L +N+IT+  +  L  L NL  L+L S  + +  +  L  L NLK ++L   Q+  + + 
Sbjct: 322 LNYNQITN--ITPLVNLNNLTGLDLHSNQVTN--VTPLVQLKNLKWIDLRFNQI--TDIS 375

Query: 222 HLSGLTNL 229
            LSGLTNL
Sbjct: 376 SLSGLTNL 383


>gi|149173736|ref|ZP_01852365.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148847266|gb|EDL61600.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 496

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 148/309 (47%), Gaps = 7/309 (2%)

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNL 138
            GL  + +  +  +++TD G+ YL  L  L  LNL+   VT A  L  L  L  L  L+L
Sbjct: 116 PGLRPVPAANVRRNQITDRGLGYLTELSSLRSLNLQATRVTDAGLLQYLPELPRLQRLSL 175

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT--NLESLNLDSCGIGDEGL 196
               ++D        +  L+ +NLG   +++E +++L G    +L  LNL +  + D+ L
Sbjct: 176 ACLDITDAALLALESLAWLESINLGHTAVSNEAILNLVGAKAFSLRRLNLSNTAVNDQAL 235

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
                   L  LELSDT +  +  +       L  + L+FT I+D  +R LA    L+ L
Sbjct: 236 AECLPDSQLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDITDDGVRHLANCGHLRKL 295

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
            L   +ITDT L  L   +G+  L L    ITD+G   L +F  L SL++    LTD G+
Sbjct: 296 ELFKTKITDTSLVWLAD-SGIEDLGLGFTAITDAGIPALTDFPALESLDLQKTSLTDKGL 354

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
           + + + ++L  L L  N  ++   +E +  L         N  I +AGL  L    +LR+
Sbjct: 355 RFLSEATNLKQLQLD-NTEISHAGIEFLLSLPLESL--SLNPGIDNAGLNTLVRHNSLRN 411

Query: 377 LTLESCKVT 385
           L + +C VT
Sbjct: 412 LAIWNCNVT 420



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 158/342 (46%), Gaps = 48/342 (14%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---------------- 114
           + + D++ L      ++L +  + ++D+G+ ++  ++ L  L L                
Sbjct: 40  VANEDLRHLIFYPGFEALILDNTSISDAGLNFIGEMRNLERLGLYDTLVSDDGLKPLLKL 99

Query: 115 -----------EGC------PVTAA----------CLDSLSALGSLFYLNLNRCQLSDDG 147
                       GC      PV AA           L  L+ L SL  LNL   +++D G
Sbjct: 100 SKLEKLNIACAPGCLSPGLRPVPAANVRRNQITDRGLGYLTELSSLRSLNLQATRVTDAG 159

Query: 148 CEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG--LCN 204
             ++  ++  L+ L+L   +ITD  L+ L+ L  LES+NL    + +E ++NL G    +
Sbjct: 160 LLQYLPELPRLQRLSLACLDITDAALLALESLAWLESINLGHTAVSNEAILNLVGAKAFS 219

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           L+ L LS+T V    L      + L  + LS TGI+D + +       L  L L+   IT
Sbjct: 220 LRRLNLSNTAVNDQALAECLPDSQLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDIT 279

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 324
           D G+  L +   L  L+LF  +ITD+   +L +   +  L +    +TDAG+  + D  +
Sbjct: 280 DDGVRHLANCGHLRKLELFKTKITDTSLVWLAD-SGIEDLGLGFTAITDAGIPALTDFPA 338

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
           L  L+L Q  +LTDK L  +S  T L  L + N+ I+ AG+ 
Sbjct: 339 LESLDL-QKTSLTDKGLRFLSEATNLKQLQLDNTEISHAGIE 379



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ++NL  +E+ +E L HL      E+L LD+  I D GL  +  + NL+ L L DT V   
Sbjct: 32  LVNLMNSEVANEDLRHLIFYPGFEALILDNTSISDAGLNFIGEMRNLERLGLYDTLVSDD 91

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
           GL+ L  L+ LE +N++    + G L    GL  + + N+   QITD GL  LT L+ L 
Sbjct: 92  GLKPLLKLSKLEKLNIA---CAPGCLSP--GLRPVPAANVRRNQITDRGLGYLTELSSLR 146

Query: 279 HLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
            L+L   R+TD+G   YL     L+ L +    +TDA +  ++ L+ L  +NL       
Sbjct: 147 SLNLQATRVTDAGLLQYLPELPRLQRLSLACLDITDAALLALESLAWLESINLGHTAVSN 206

Query: 338 DKTLELISGLT-GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           +  L L+      L  LN+SN+ +    L    P   L  L L    +T
Sbjct: 207 EAILNLVGAKAFSLRRLNLSNTAVNDQALAECLPDSQLNKLELSDTGIT 255


>gi|421897032|ref|ZP_16327415.1| type III effector gala6 protein [Ralstonia solanacearum MolK2]
 gi|206588197|emb|CAQ18765.1| type III effector gala6 protein [Ralstonia solanacearum MolK2]
          Length = 625

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/298 (33%), Positives = 140/298 (46%), Gaps = 1/298 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I D     L+    LKSL  S + + D+G+        LT LNL G  +  A   +L 
Sbjct: 268 NGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALR 327

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
              SL  L+L+  +L D G +  +   SL  LNL  NEI D+    L   T L+SLNL  
Sbjct: 328 RNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLSY 387

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             IG  G   L G   L+ L+L    +   G   L+  T+L S++L    I D   R LA
Sbjct: 388 NPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALA 447

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
              +L  L+L    I D G  AL     LT L+L+G  + D GAA L     L SL +  
Sbjct: 448 TSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLGR 507

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
             +   G +H+   ++LT L+LS+N  +  +  E +S  T L +LNVS + I   G R
Sbjct: 508 NRIGPNGAQHLAKSATLTELDLSEN-RIGPEGAEALSLSTVLTTLNVSGNAIGEKGAR 564



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 179/416 (43%), Gaps = 53/416 (12%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           M  +L     LTS+ F+    +T + +KA      +  LD+ RCT   G  V+  GL  L
Sbjct: 132 MFAHLGKYPALTSVRFK--GELTLEALKALP--PGVEHLDISRCT---GRGVSNAGLAHL 184

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            +              +PL      KSL ++  ++   G   L     LT L+L GC + 
Sbjct: 185 AT--------------RPL------KSLSLNGIEIDAEGARLLATCASLTSLSLTGCSIG 224

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
                +L+   S+  L+L+   +  DG    +    L  LNL  N I DE  + L     
Sbjct: 225 DRAATALAQSRSIASLDLSVNMIGPDGARALAS-APLLSLNLHNNGIGDEGALALATSGT 283

Query: 181 LESLNLDSCGIGDEGLV---------------NLTGLCNLKC---------LELSDTQVG 216
           L+SLN  + GIGD G++               N+ G    +          L+LS  ++G
Sbjct: 284 LKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLG 343

Query: 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276
            +G + L+G  +L S+NL    I D     LA  ++LKSLNL    I   G  AL   T 
Sbjct: 344 DAGAQVLAGSRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTT 403

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           L  LDL    I   GA+ L    +L SL +    + D G + +    +LTLL+LS+N N+
Sbjct: 404 LRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALATSRTLTLLDLSRN-NI 462

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            D   + ++G   L SLN+  + +   G   L     L SL L   ++  N  + L
Sbjct: 463 HDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHL 518



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 121/277 (43%), Gaps = 2/277 (0%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I   G +A     +L +LDL        G   L G   L SLN++  N I D   + L
Sbjct: 316 NMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNLR-HNEIGDDGTEAL 374

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           +  T LKSL +S + +   G   L G   L  L+L  C +      +L+   SL  L+L 
Sbjct: 375 ARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLG 434

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
             ++ DDG    +   +L +L+L  N I D     L G  +L SLNL    + D+G   L
Sbjct: 435 SNRIGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAAL 494

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
                L  L L   ++G +G +HL+    L  ++LS   I       L+  + L +LN+ 
Sbjct: 495 AQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLNVS 554

Query: 260 ARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYL 295
              I + G  A     T LT LD    R  ++GA  L
Sbjct: 555 GNAIGEKGARAFAEKSTSLTSLDARNNRRGEAGAKML 591



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 135/317 (42%), Gaps = 28/317 (8%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L+SLN    N I D+ +   +  T L  L ++ + +  +G   L+    LT L+L    +
Sbjct: 284 LKSLNAS-NNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRL 342

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE--------- 170
             A    L+   SL  LNL   ++ DDG E  ++  +LK LNL +N I            
Sbjct: 343 GDAGAQVLAGSRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGST 402

Query: 171 ---------CLVHLKGL------TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
                    C +   G       T+L SL+L S  IGD+G   L     L  L+LS   +
Sbjct: 403 TLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALATSRTLTLLDLSRNNI 462

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
             +G + L+G  +L S+NL    + D     LA    L SLNL   +I   G   L    
Sbjct: 463 HDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHLAKSA 522

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQN- 333
            LT LDL   RI   GA  L     L +L + G  + + G +   + S SLT L+   N 
Sbjct: 523 TLTELDLSENRIGPEGAEALSLSTVLTTLNVSGNAIGEKGARAFAEKSTSLTSLDARNNR 582

Query: 334 -CNLTDKTLELISGLTG 349
                 K LE  + LTG
Sbjct: 583 RGEAGAKMLEANTRLTG 599


>gi|290972583|ref|XP_002669031.1| predicted protein [Naegleria gruberi]
 gi|284082572|gb|EFC36287.1| predicted protein [Naegleria gruberi]
          Length = 369

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 167/356 (46%), Gaps = 8/356 (2%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E +S +  LT L     N I    M+    +  L +LD+ERC     G+  L  + +L S
Sbjct: 19  EAISEMRQLTKLGI---NGIQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMPQLTS 75

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN  + N +   D K +S ++ L  L I+ +++   G  Y+  L +LT L++    + + 
Sbjct: 76  LNGGY-NYLQCGDAKLISEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNNNILSE 134

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
               +  L +L  LN+ R  + D+G    S++  L  L++GFN    E +  +  L +L 
Sbjct: 135 GAKFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNMFGFEGIKAISQLNHLI 194

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDT--QVGSSGLRHL-SGLTNLESINLSFTGI 239
            L++    I   G+  +T   NL  L L +      +  L  L S +  L ++++    I
Sbjct: 195 ELSIQGNEITINGVKLITEKKNLTSLNLGNIFYDTKTPELSQLVSQMHQLTTLDIENNNI 254

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
                  LA + +LK LN+    I   GL+ +T LT LT L++ G +I D GA  + + K
Sbjct: 255 GPEVANLLAEMKNLKHLNIAFNNIEKEGLSHITQLTQLTSLNVCGNQIDDEGAKIVSSMK 314

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
            L  L I    L + G + I ++  LT L +S N  + +K +E+I G   L  + +
Sbjct: 315 QLLKLNIEENFLNEGGCETIIEMPQLTQLYISSN-RIGEKQVEMICGKKNLRDIRI 369



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 155/349 (44%), Gaps = 32/349 (9%)

Query: 72  TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA---------- 121
           T S ++ +S +  L  L I+   + D+ +  +  + +LT L++E C ++           
Sbjct: 14  TSSSIEAISEMRQLTKLGING--IQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMP 71

Query: 122 ------------ACLDS--LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
                        C D+  +S +  L  L++N  ++  +G +  S +  L  L++G N I
Sbjct: 72  QLTSLNGGYNYLQCGDAKLISEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNNNI 131

Query: 168 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 227
             E    ++ L NL  LN++   IGDEG   ++ +  L  L++     G  G++ +S L 
Sbjct: 132 LSEGAKFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNMFGFEGIKAISQLN 191

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH----LDLF 283
           +L  +++    I+   ++ +    +L SLNL      DT    L+ L    H    LD+ 
Sbjct: 192 HLIELSIQGNEITINGVKLITEKKNLTSLNL-GNIFYDTKTPELSQLVSQMHQLTTLDIE 250

Query: 284 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
              I    A  L   KNL+ L I    +   G+ HI  L+ LT LN+  N  + D+  ++
Sbjct: 251 NNNIGPEVANLLAEMKNLKHLNIAFNNIEKEGLSHITQLTQLTSLNVCGN-QIDDEGAKI 309

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           +S +  L+ LN+  + +   G   +  +  L  L + S ++    ++ +
Sbjct: 310 VSSMKQLLKLNIEENFLNEGGCETIIEMPQLTQLYISSNRIGEKQVEMI 358


>gi|149175637|ref|ZP_01854257.1| putative serine/threonine-protein kinase [Planctomyces maris DSM
           8797]
 gi|148845622|gb|EDL59965.1| putative serine/threonine-protein kinase [Planctomyces maris DSM
           8797]
          Length = 718

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 109/200 (54%), Gaps = 10/200 (5%)

Query: 131 GSLFYLNLNRCQLSDDG-CEKFSKIGSLKVLNLGFNEI-------TDECLVHLKGLTNLE 182
            +++ LN ++C++  DG  E  +++  L V++    EI       T E +  LKGL  LE
Sbjct: 510 AAVWLLN-HQCEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLE 568

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISD 241
           +L+L+ C + D+ L  L G   LK L+L +T + ++GL H+S L NL  ++L     I+D
Sbjct: 569 TLHLEDCHVMDDALAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITD 628

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             L+ LA L  L S+NLD   ITD G+  +     L  L++   +I+D+    L     +
Sbjct: 629 EGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRM 688

Query: 302 RSLEICGGGLTDAGVKHIKD 321
           ++L + G  +TD G++ IK+
Sbjct: 689 KNLYLEGSKITDQGIQKIKN 708



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)

Query: 68  CNCITDSDMKPLSGLTNL-------KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           C  I D   +P++ +  L       + ++     +T   +A LKGL KL  L+LE C V 
Sbjct: 519 CEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVM 578

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLT 179
              L  L    +L  L+L+   L++ G    S + +L  L+L  N EITDE L  L  L 
Sbjct: 579 DDALAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANLK 638

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            L S+NLD   I DEG+  +     L  L + DTQ+  + +  L  L  ++++ L  + I
Sbjct: 639 KLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRMKNLYLEGSKI 698

Query: 240 SDGSLRKL----AGLSSLK 254
           +D  ++K+    AG   +K
Sbjct: 699 TDQGIQKIKNAYAGRDPIK 717



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 4/181 (2%)

Query: 17  RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 76
           R       Q +      I  +K   +  TR    +  LKGL KLE+L+++ C+ + D+ +
Sbjct: 526 RYEPVTQVQELPVVDFYIREIKFHPQTITR--EVMAPLKGLAKLETLHLEDCHVMDDA-L 582

Query: 77  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-GCPVTAACLDSLSALGSLFY 135
            PL G   LK+L +  + +T++G++++  L  LT L+L+    +T   L +L+ L  L  
Sbjct: 583 APLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANLKKLSS 642

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           +NL+R  ++D+G         L  LN+   +I+D  +  L  L  +++L L+   I D+G
Sbjct: 643 INLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRMKNLYLEGSKITDQG 702

Query: 196 L 196
           +
Sbjct: 703 I 703



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 7/161 (4%)

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQI-------TDTGLAALTSLTGLTHLDLFGARITDSG 291
           I DG    +  +  L  ++   R+I       T   +A L  L  L  L L    + D  
Sbjct: 522 IIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVMDDA 581

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
            A L     L++L++   GLT+AG+ HI  L +LT L+L +N  +TD+ L+ ++ L  L 
Sbjct: 582 LAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANLKKLS 641

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           S+N+    IT  G+  +K    L  L ++  +++   I  L
Sbjct: 642 SINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLL 682



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 1/101 (0%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           ++S L NLT LS ++N  IT +G++A A L  L  ++L+R      G+  +K   +L+ L
Sbjct: 608 HISSLLNLTHLSLQKNREITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWL 667

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 104
           NIK    I+D+ +  L  L  +K+L +  SK+TD GI  +K
Sbjct: 668 NIK-DTQISDTSIPLLIKLNRMKNLYLEGSKITDQGIQKIK 707



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
             IT + M    GL  L  L LE C  +   L  L+G + L++L++     +T++ +  +
Sbjct: 551 QTITREVMAPLKGLAKLETLHLEDCHVMDDALAPLEGKLTLKTLDLHETG-LTNAGLSHI 609

Query: 80  SGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           S L NL  L +  ++ +TD G+  L  L+KL+ +NL+   +T   +  +     L +LN+
Sbjct: 610 SSLLNLTHLSLQKNREITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNI 669

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              Q+SD       K+  +K L L  ++ITD+ +  +K
Sbjct: 670 KDTQISDTSIPLLIKLNRMKNLYLEGSKITDQGIQKIK 707



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 1/147 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L GL+ L +L    +  +    +    G + L  LDL      + GL ++  L+ L  L+
Sbjct: 561 LKGLAKLETLHLE-DCHVMDDALAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLS 619

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           ++    ITD  ++ L+ L  L S+ +    +TD GI ++K   +L  LN++   ++   +
Sbjct: 620 LQKNREITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSI 679

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKF 151
             L  L  +  L L   +++D G +K 
Sbjct: 680 PLLIKLNRMKNLYLEGSKITDQGIQKI 706


>gi|300691655|ref|YP_003752650.1| type III effector protein [Ralstonia solanacearum PSI07]
 gi|299078715|emb|CBJ51374.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
           solanacearum PSI07]
          Length = 608

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 157/341 (46%), Gaps = 5/341 (1%)

Query: 25  QGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 83
           +  +A A   ++  LDL    RI   G   L G   L SLN+ + N I D   + L+   
Sbjct: 226 RAAEALAASQSIKSLDLS-ANRIGRDGARALAG-APLVSLNL-YSNAIGDEGARALATSR 282

Query: 84  NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 143
            L SL +S + + D+G   L     LT LNL+G  +      +L+   SL  L+L   +L
Sbjct: 283 TLTSLNLSSNGIDDAGAGALADNTLLTQLNLQGNRIGRGGAQALANSTSLTDLDLGNNRL 342

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
            D G    +   SL  L++  NEI D+    L     L+SLNL    I   G+  L G  
Sbjct: 343 GDRGARALAGSKSLTSLSVRGNEIGDKGAKALARNATLKSLNLSYNLISLRGVRALGGSA 402

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
            L  L+L    + SSG   L+   +L S+ L    I D   R LA  S+L  L L    I
Sbjct: 403 TLSVLDLCACDIDSSGASALARNASLASLYLGSNRIGDRGARALAKNSTLTRLALSGNGI 462

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
             TG  AL     L  LDL G  I D GAA L     L SL++ G  +  AG + +   +
Sbjct: 463 HTTGAQALAGNDSLISLDLGGNEIDDDGAAALARHPRLISLDLRGNRIRSAGAQQLAKSA 522

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           +L  L+LS N  +  +  E +S  T L +LNVS++ I  AG
Sbjct: 523 TLAELDLSAN-RIGAEGAEALSRSTVLTTLNVSDNAIGDAG 562



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 99/286 (34%), Positives = 138/286 (48%), Gaps = 9/286 (3%)

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGS--LK 158
           +L     L  L L+G    A  LD+L AL   L +L+L+RC  S       + + +  LK
Sbjct: 135 HLGNYPALKSLRLKG----ALTLDALKALPPGLEHLDLSRCTGSAMSSAGLAHLAARPLK 190

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
            L +   EI  E    L   T+L SL+L  C IGD     L    ++K L+LS  ++G  
Sbjct: 191 SLCMIGIEIGVEGAQRLAASTSLASLSLIGCEIGDRAAEALAASQSIKSLDLSANRIGRD 250

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
           G R L+G   L S+NL    I D   R LA   +L SLNL +  I D G  AL   T LT
Sbjct: 251 GARALAG-APLVSLNLYSNAIGDEGARALATSRTLTSLNLSSNGIDDAGAGALADNTLLT 309

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
            L+L G RI   GA  L N  +L  L++    L D G + +    SLT L++  N  + D
Sbjct: 310 QLNLQGNRIGRGGAQALANSTSLTDLDLGNNRLGDRGARALAGSKSLTSLSVRGN-EIGD 368

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           K  + ++    L SLN+S + I+  G+R L     L  L L +C +
Sbjct: 369 KGAKALARNATLKSLNLSYNLISLRGVRALGGSATLSVLDLCACDI 414



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 153/340 (45%), Gaps = 8/340 (2%)

Query: 50  GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 109
           G   L     L SL++  C  I D   + L+   ++KSL +S +++   G   L G   L
Sbjct: 203 GAQRLAASTSLASLSLIGCE-IGDRAAEALAASQSIKSLDLSANRIGRDGARALAG-APL 260

Query: 110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
             LNL    +      +L+   +L  LNL+   + D G    +    L  LNL  N I  
Sbjct: 261 VSLNLYSNAIGDEGARALATSRTLTSLNLSSNGIDDAGAGALADNTLLTQLNLQGNRIGR 320

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
                L   T+L  L+L +  +GD G   L G  +L  L +   ++G  G + L+    L
Sbjct: 321 GGAQALANSTSLTDLDLGNNRLGDRGARALAGSKSLTSLSVRGNEIGDKGAKALARNATL 380

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
           +S+NLS+  IS   +R L G ++L  L+L A  I  +G +AL     L  L L   RI D
Sbjct: 381 KSLNLSYNLISLRGVRALGGSATLSVLDLCACDIDSSGASALARNASLASLYLGSNRIGD 440

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
            GA  L     L  L + G G+   G + +    SL  L+L  N  + D     ++    
Sbjct: 441 RGARALAKNSTLTRLALSGNGIHTTGAQALAGNDSLISLDLGGN-EIDDDGAAALARHPR 499

Query: 350 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 389
           L+SL++  +RI SAG + L      +S TL    ++AN I
Sbjct: 500 LISLDLRGNRIRSAGAQQLA-----KSATLAELDLSANRI 534



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 177/410 (43%), Gaps = 52/410 (12%)

Query: 8   LSNLTSL-SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 66
           L N  +L S R   A+T   +KA      L  LDL RCT   G  ++  GL  L +    
Sbjct: 136 LGNYPALKSLRLKGALTLDALKALP--PGLEHLDLSRCT---GSAMSSAGLAHLAA---- 186

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
                     +PL      KSL +   ++   G   L     L  L+L GC +     ++
Sbjct: 187 ----------RPL------KSLCMIGIEIGVEGAQRLAASTSLASLSLIGCEIGDRAAEA 230

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           L+A  S+  L+L+  ++  DG    +    L  LNL  N I DE    L     L SLNL
Sbjct: 231 LAASQSIKSLDLSANRIGRDGARALAG-APLVSLNLYSNAIGDEGARALATSRTLTSLNL 289

Query: 187 DSCGIGDEGL-----------VNLTG----------LCN---LKCLELSDTQVGSSGLRH 222
            S GI D G            +NL G          L N   L  L+L + ++G  G R 
Sbjct: 290 SSNGIDDAGAGALADNTLLTQLNLQGNRIGRGGAQALANSTSLTDLDLGNNRLGDRGARA 349

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           L+G  +L S+++    I D   + LA  ++LKSLNL    I+  G+ AL     L+ LDL
Sbjct: 350 LAGSKSLTSLSVRGNEIGDKGAKALARNATLKSLNLSYNLISLRGVRALGGSATLSVLDL 409

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
               I  SGA+ L    +L SL +    + D G + +   S+LT L LS N  +     +
Sbjct: 410 CACDIDSSGASALARNASLASLYLGSNRIGDRGARALAKNSTLTRLALSGN-GIHTTGAQ 468

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            ++G   L+SL++  + I   G   L     L SL L   ++ +   ++L
Sbjct: 469 ALAGNDSLISLDLGGNEIDDDGAAALARHPRLISLDLRGNRIRSAGAQQL 518



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 142/326 (43%), Gaps = 4/326 (1%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 70
           LTSL+   +N I   G  A A    L +L+L+      GG   L     L  L++   N 
Sbjct: 284 LTSLNLS-SNGIDDAGAGALADNTLLTQLNLQGNRIGRGGAQALANSTSLTDLDL-GNNR 341

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           + D   + L+G  +L SL +  +++ D G   L     L  LNL    ++   + +L   
Sbjct: 342 LGDRGARALAGSKSLTSLSVRGNEIGDKGAKALARNATLKSLNLSYNLISLRGVRALGGS 401

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            +L  L+L  C +   G    ++  SL  L LG N I D     L   + L  L L   G
Sbjct: 402 ATLSVLDLCACDIDSSGASALARNASLASLYLGSNRIGDRGARALAKNSTLTRLALSGNG 461

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           I   G   L G  +L  L+L   ++   G   L+    L S++L    I     ++LA  
Sbjct: 462 IHTTGAQALAGNDSLISLDLGGNEIDDDGAAALARHPRLISLDLRGNRIRSAGAQQLAKS 521

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
           ++L  L+L A +I   G  AL+  T LT L++    I D+GA  L    +L SL+    G
Sbjct: 522 ATLAELDLSANRIGAEGAEALSRSTVLTTLNVSDNAIGDAGALALAKSTSLISLDARRSG 581

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNL 336
           + + G + ++  + LT     QN N 
Sbjct: 582 IGEVGARALEANTRLT--GTPQNPNF 605


>gi|301126468|ref|XP_002909849.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262101999|gb|EEY60051.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 427

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 172/341 (50%), Gaps = 47/341 (13%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQK--LTLLNLEG 116
           L+ +N+  C+ +TD  ++ L+ L+ L S+ +  C +VTD  I  L   Q   LT +NL  
Sbjct: 88  LKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGY 147

Query: 117 CPVTAACLDSLSALGS----LFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF---NEIT 168
           C V +   + ++A+ S    L YLNL  C Q+ D+G    +++ +L+ LNL +     +T
Sbjct: 148 CKVVSD--EGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALT 205

Query: 169 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGL 226
           D  +  L  +T+L SLNL +C  + DEG+ +L+ L  L+ LE+++  +V   G   L+ L
Sbjct: 206 DGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPL 265

Query: 227 TNL-------------------------ESINLSF-TGISDGSLRKLAGLSSLKSLN-LD 259
            NL                          S NL + + I D + + +  L+ ++ LN + 
Sbjct: 266 VNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMK 325

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 317
             ++TD GL ++  L  LT LD+     +TD G   L     L+SL + G  G+ D G+ 
Sbjct: 326 CGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEGIA 385

Query: 318 HIKDLSSLTLLNLSQNCNLTDKTLELI---SGLTGLVSLNV 355
            +  LSSL +L+LS    + +K L  I   +G++G V+  V
Sbjct: 386 ALSHLSSLVILDLSNCRQVGNKALLGIDDGTGVSGAVAHQV 426



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 154/314 (49%), Gaps = 35/314 (11%)

Query: 82  LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSL--SALGSLFYLN 137
             +LK + ++ CS +TD  +  L  L  LT + L+GC  VT   +  L  S   SL  +N
Sbjct: 85  FPHLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVN 144

Query: 138 LNRCQ-LSDDGCEKF-SKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           L  C+ +SD+G     S +  L  LNL G +++ D  +  L  L NL++LNL  C  G  
Sbjct: 145 LGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQG-- 202

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSL 253
                          L+D      G+  L+ +T+L S+NLS  + ++D  +  L+ L  L
Sbjct: 203 --------------ALTD-----GGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKL 243

Query: 254 KSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRS--LEICGG 309
           + L + +  ++TD G  AL  L  L  LD+ G   ITD+G   L NF  L S  L  C  
Sbjct: 244 RHLEIANVGEVTDQGFLALAPLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYC-S 302

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN-VSNSRITSAGLRHL 368
            + DA  +H++ L+ +  LN  +   +TD+ L  I+ L  L SL+ VS   +T  GL  L
Sbjct: 303 EIGDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNEL 362

Query: 369 KPLKNLRSLTLESC 382
             L  L+SL L  C
Sbjct: 363 SKLNRLKSLYLGGC 376



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 134/287 (46%), Gaps = 32/287 (11%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR---IHGGLVNLKGL 57
           +T   S LS L  L+ R  + +   G++A A L NL  L+L  C +     GG+  L  +
Sbjct: 156 ITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALTDGGISALAEV 215

Query: 58  MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEG 116
             L SLN+  C+ +TD  +  LS L  L+ L+I+   +VTD G   L  L  L  L++ G
Sbjct: 216 TSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPLVNLVTLDVAG 275

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL 175
           C                         ++D G E       L   NL + +EI D    H+
Sbjct: 276 CY-----------------------NITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHM 312

Query: 176 KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESIN 233
           + LT +  LN   CG + D GL ++  L NL  L++ S   V   GL  LS L  L+S+ 
Sbjct: 313 ESLTKMRFLNFMKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLY 372

Query: 234 L-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLT 278
           L   +GI D  +  L+ LSSL  L+L + RQ+ +  L  +   TG++
Sbjct: 373 LGGCSGIRDEGIAALSHLSSLVILDLSNCRQVGNKALLGIDDGTGVS 419


>gi|290977840|ref|XP_002671645.1| member of the leucine-rich repeat protein family [Naegleria
           gruberi]
 gi|284085215|gb|EFC38901.1| member of the leucine-rich repeat protein family [Naegleria
           gruberi]
          Length = 392

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 130/250 (52%), Gaps = 6/250 (2%)

Query: 85  LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
           L  L +  + + D G++Y+  L KLT LN+    +++     LS +  L YL+++  ++ 
Sbjct: 109 LVDLDMKMNNIGDIGVSYISNLTKLTKLNVSYNRISSEGAKYLSKMKQLTYLDISHNKIG 168

Query: 145 DDGCEKF--SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           +DG  KF  + I  L  LN+ +NEI    +  +  L  L SLN+    IGD+G+ +L  +
Sbjct: 169 EDGS-KFICNGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVGGNRIGDQGIEHLMRM 227

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
             L  L +S+  +   G + +S +T L ++N+    I D   + ++ +  L  L++    
Sbjct: 228 HQLVDLNISNNNIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYISEMKQLIKLDIGKNY 287

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH---I 319
           +++ G   ++ +  LT+LD+    I + GA ++   K L +L + G  +TD G+KH   +
Sbjct: 288 LSNRGAKYISEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLNGNYITDEGIKHLCGL 347

Query: 320 KDLSSLTLLN 329
             L SL++ N
Sbjct: 348 YQLVSLSIYN 357



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 6/306 (1%)

Query: 103 LKG--LQKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
           LKG  LQ + +L +E    T       SA+    L  L++    + D G    S +  L 
Sbjct: 75  LKGQLLQNIEILIVEKRNETIFDCKIFSAMMKNRLVDLDMKMNNIGDIGVSYISNLTKLT 134

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGS 217
            LN+ +N I+ E   +L  +  L  L++    IG++G   +  G+  L  L +   ++G 
Sbjct: 135 KLNVSYNRISSEGAKYLSKMKQLTYLDISHNKIGEDGSKFICNGIRQLTHLNIYYNEIGV 194

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
            G++ +  L  L S+N+    I D  +  L  +  L  LN+    I   G   ++ +T L
Sbjct: 195 RGVKFIGALKQLTSLNVGGNRIGDQGIEHLMRMHQLVDLNISNNNIRVEGAKLVSEMTQL 254

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
           T+L++    I D GA Y+   K L  L+I    L++ G K+I ++  LT L++  N N+ 
Sbjct: 255 TNLNIRKNIIGDDGAKYISEMKQLIKLDIGKNYLSNRGAKYISEMKYLTNLDIRSN-NIR 313

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 397
           ++  E I  +  L +LN++ + IT  G++HL  L  L SL++ +  +   D  +L S  +
Sbjct: 314 EEGAEFIGEMKQLTNLNLNGNYITDEGIKHLCGLYQLVSLSIYNTGIQMEDGAKLLSETM 373

Query: 398 PNLVSF 403
            + +S+
Sbjct: 374 NHHLSY 379



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 128/271 (47%), Gaps = 4/271 (1%)

Query: 28  KAFAGLIN--LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 85
           K F+ ++   LV LD++       G+  +  L KL  LN+ + N I+    K LS +  L
Sbjct: 99  KIFSAMMKNRLVDLDMKMNNIGDIGVSYISNLTKLTKLNVSY-NRISSEGAKYLSKMKQL 157

Query: 86  KSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
             L IS +K+ + G  ++  G+++LT LN+    +    +  + AL  L  LN+   ++ 
Sbjct: 158 TYLDISHNKIGEDGSKFICNGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVGGNRIG 217

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
           D G E   ++  L  LN+  N I  E    +  +T L +LN+    IGD+G   ++ +  
Sbjct: 218 DQGIEHLMRMHQLVDLNISNNNIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYISEMKQ 277

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           L  L++    + + G +++S +  L ++++    I +     +  +  L +LNL+   IT
Sbjct: 278 LIKLDIGKNYLSNRGAKYISEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLNGNYIT 337

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
           D G+  L  L  L  L ++   I     A L
Sbjct: 338 DEGIKHLCGLYQLVSLSIYNTGIQMEDGAKL 368


>gi|290972682|ref|XP_002669080.1| predicted protein [Naegleria gruberi]
 gi|284082622|gb|EFC36336.1| predicted protein [Naegleria gruberi]
          Length = 434

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 156/316 (49%), Gaps = 3/316 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I+ + MK +S L+ L  L +  + + + GI  +  L KLT LN+    +T+  +  + 
Sbjct: 79  NEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLSKLTCLNIINANITSEGVKLIG 138

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L +L  L+++   +  +G +   ++ +LK+L    NE+       +  +  L SL L  
Sbjct: 139 KLSNLTILDISGNLIGAEGGQYIGELNNLKILVASDNELGVFGAKSIGEMNQLTSLCLIG 198

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             IG+EG   ++ L  L  L+L   ++G+ G + L+ L  L ++++    ISD  L  + 
Sbjct: 199 NSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLTNLDMVSNNISD--LSSIG 256

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
            L  L  L++   +I DTG+  +  L GL  L L G  IT  GA  L     L +L I  
Sbjct: 257 QLGLLNCLDVRKNKIEDTGIRNICQLGGLNALRLCGNPITSEGAKILSEMVQLTNLSISE 316

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
             + D G K I  L++L  L++S    +T   ++ I  L+ L+SL+++ + I   G+ ++
Sbjct: 317 THIDDEGAKFIAQLTTLKYLDISTK-RITANGVKFICQLSKLISLDINWNNIGDEGVLYI 375

Query: 369 KPLKNLRSLTLESCKV 384
             ++ L +L    C +
Sbjct: 376 SRMQQLETLNAVYCNI 391



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 154/328 (46%), Gaps = 23/328 (7%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           S++   S L  L  L ++ +++ D  +  +  L+ LTLL L G  ++   +  +S L  L
Sbjct: 36  SEIDKFSRLDQLTELNVNWNRLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSEL 95

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             L++    + ++G      +  L  LN+    IT E +  +  L+NL  L++    IG 
Sbjct: 96  TKLSVGLNSIENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGA 155

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
           EG   +  L NLK L  SD ++G  G + +  +  L S+ L    I +   + ++ L+ L
Sbjct: 156 EGGQYIGELNNLKILVASDNELGVFGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLTQL 215

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFG----------------------ARITDSG 291
             L+L   +I + G   LT L  LT+LD+                         +I D+G
Sbjct: 216 TDLDLGRNEIGNEGFKLLTKLEKLTNLDMVSNNISDLSSIGQLGLLNCLDVRKNKIEDTG 275

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
              +     L +L +CG  +T  G K + ++  LT L++S+  ++ D+  + I+ LT L 
Sbjct: 276 IRNICQLGGLNALRLCGNPITSEGAKILSEMVQLTNLSISE-THIDDEGAKFIAQLTTLK 334

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLTL 379
            L++S  RIT+ G++ +  L  L SL +
Sbjct: 335 YLDISTKRITANGVKFICQLSKLISLDI 362



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 165/354 (46%), Gaps = 29/354 (8%)

Query: 3   ENLSGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           E++  + NL +L+      N I+   MK  + L  L KL +   +  + G+ ++  L KL
Sbjct: 60  EDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLSKL 119

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             LNI   N IT   +K +  L+NL  L IS + +   G  Y+  L  L +L      + 
Sbjct: 120 TCLNIINAN-ITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELNNLKILVASDNELG 178

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKG 177
                S+  +  L  L L    + ++G +  S++  L  L+LG NEI +E    L  L+ 
Sbjct: 179 VFGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEK 238

Query: 178 LTNLESL-----NLDSCG--------------IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           LTNL+ +     +L S G              I D G+ N+  L  L  L L    + S 
Sbjct: 239 LTNLDMVSNNISDLSSIGQLGLLNCLDVRKNKIEDTGIRNICQLGGLNALRLCGNPITSE 298

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
           G + LS +  L ++++S T I D   + +A L++LK L++  ++IT  G+  +  L+ L 
Sbjct: 299 GAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLI 358

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHIKDLSSLTLLNL 330
            LD+    I D G  Y+   + L +L    C  GL   G K + ++  LT+L++
Sbjct: 359 SLDINWNNIGDEGVLYISRMQQLETLNAVYCNIGL--EGAKLLSEMEQLTVLDV 410



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 2/238 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I +   K +S LT L  L +  +++ + G   L  L+KLT  NL+      + L S+ 
Sbjct: 199 NSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLT--NLDMVSNNISDLSSIG 256

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            LG L  L++ + ++ D G     ++G L  L L  N IT E    L  +  L +L++  
Sbjct: 257 QLGLLNCLDVRKNKIEDTGIRNICQLGGLNALRLCGNPITSEGAKILSEMVQLTNLSISE 316

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             I DEG   +  L  LK L++S  ++ ++G++ +  L+ L S+++++  I D  +  ++
Sbjct: 317 THIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGDEGVLYIS 376

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
            +  L++LN     I   G   L+ +  LT LD+   RI   G   L N    +SL +
Sbjct: 377 RMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKIKRIPGEGIQLLENIARFKSLVV 434



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 119/249 (47%), Gaps = 20/249 (8%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLE-------------------SLNLDSCGIGDEGL 196
           +L  LN+ +N+I+++  + L G+ +L+                    LN++   + DE +
Sbjct: 3   NLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEIDKFSRLDQLTELNVNWNRLKDEDV 62

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
            ++  L NL  LELS  ++  + ++ +S L+ L  +++    I +  +  +  LS L  L
Sbjct: 63  KSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLSKLTCL 122

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
           N+    IT  G+  +  L+ LT LD+ G  I   G  Y+    NL+ L      L   G 
Sbjct: 123 NIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELNNLKILVASDNELGVFGA 182

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
           K I +++ LT L L  N  + ++  + IS LT L  L++  + I + G + L  L+ L +
Sbjct: 183 KSIGEMNQLTSLCLIGNS-IGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLTN 241

Query: 377 LTLESCKVT 385
           L + S  ++
Sbjct: 242 LDMVSNNIS 250



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 6/202 (2%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           + NL  LN+D   I ++  + L+G+ +LK L  S +++        S L  L  +N+++ 
Sbjct: 1   MKNLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEI-----DKFSRLDQLTELNVNWN 55

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            + D  ++ +  L +L  L L   +I+   +  ++ L+ LT L +    I + G   + N
Sbjct: 56  RLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIIN 115

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
              L  L I    +T  GVK I  LS+LT+L++S N  +  +  + I  L  L  L  S+
Sbjct: 116 LSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNL-IGAEGGQYIGELNNLKILVASD 174

Query: 358 SRITSAGLRHLKPLKNLRSLTL 379
           + +   G + +  +  L SL L
Sbjct: 175 NELGVFGAKSIGEMNQLTSLCL 196


>gi|300691489|ref|YP_003752484.1| type III effector protein [Ralstonia solanacearum PSI07]
 gi|299078549|emb|CBJ51205.2| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
           solanacearum PSI07]
          Length = 533

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 171/374 (45%), Gaps = 11/374 (2%)

Query: 36  LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 91
           L +LDL RC     G +   G+  L  L +   N     I     + L+    L SL +S
Sbjct: 141 LTELDLSRCR----GPITAAGIAHLSHLPLVRLNVRDQRIGVEGARLLANHPTLTSLDVS 196

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 151
             ++   G   L    +LT L++    + A    +L+A  +L  L+++   + D+G    
Sbjct: 197 NGRIGPEGARALADNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISENGIGDEGACAL 256

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
           +    L  LN+  N I  E    L     L SL++    IGDEG+  L     L  L + 
Sbjct: 257 ATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVE 316

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
            T+VG+ G+  L+    L S+ +    I D   R LA  +SL +L++++  I+  G  AL
Sbjct: 317 RTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQAL 376

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
            + T LT L+L    I D+GA        L SL +   GL+DAG   +    ++T L+  
Sbjct: 377 AANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATILAASKTMTTLDAG 436

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
            N  + D     ++    L +L+V ++ I +AG R L     L SL L + +VT   ++ 
Sbjct: 437 DNT-IRDAGARALAANRTLTTLDVRSNEIENAGARALAANTWLASLDLRNNRVTEAGVRA 495

Query: 392 -LQSRDLPNL-VSF 403
            L +R L +L VSF
Sbjct: 496 LLANRTLSSLGVSF 509



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 171/368 (46%), Gaps = 13/368 (3%)

Query: 17  RRNNAITAQGMKAFA-GLINLVKLDLER-CTRIHGGLVNLK---GLMKLESLNIKWCNCI 71
           RR+  +  Q ++A +  L   V+ D+ +   R   GL  +K       LE L +      
Sbjct: 72  RRSKPLAVQRLRAVSKPLKAAVEADMRQLVIRDRAGLAGVKRAGNYPALEKLTL--IGPF 129

Query: 72  TDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
           TD+D++ L    +L  L +S C   +T +GIA+L  L  L  LN+    +       L+ 
Sbjct: 130 TDNDLRGLPA--SLTELDLSRCRGPITAAGIAHLSHL-PLVRLNVRDQRIGVEGARLLAN 186

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
             +L  L+++  ++  +G    +    L  L++  N I  E    L     L SL++   
Sbjct: 187 HPTLTSLDVSNGRIGPEGARALADNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISEN 246

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
           GIGDEG   L     L  L ++  ++G  G + L+    L S+++    I D  +R LA 
Sbjct: 247 GIGDEGACALATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAA 306

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
            + L +LN++  ++   G+ AL +   LT L +    I D+GA  L    +L +L I   
Sbjct: 307 NARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESN 366

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
           G++ AG + +   ++LT LNL  N  + D   +  S  T L+SL+V  + ++ AG   L 
Sbjct: 367 GISPAGAQALAANTTLTTLNLGYN-GIGDAGAQAWSANTTLISLSVRRNGLSDAGATILA 425

Query: 370 PLKNLRSL 377
             K + +L
Sbjct: 426 ASKTMTTL 433



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 142/334 (42%), Gaps = 28/334 (8%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 68
           + LT+LS   N  I A+G KA A    L  LD+        G   L    KL +LN+   
Sbjct: 212 TRLTTLSVSHNR-IGAEGAKALAASETLTSLDISENGIGDEGACALATNTKLTTLNVN-R 269

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I     K L+    L SL I  + + D G+  L    +LT LN+E             
Sbjct: 270 NRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVE------------- 316

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
                      R ++  DG    +   +L  L +  N I D     L   T+L +L+++S
Sbjct: 317 -----------RTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIES 365

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
            GI   G   L     L  L L    +G +G +  S  T L S+++   G+SD     LA
Sbjct: 366 NGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATILA 425

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
              ++ +L+     I D G  AL +   LT LD+    I ++GA  L     L SL++  
Sbjct: 426 ASKTMTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTWLASLDLRN 485

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
             +T+AGV+ +  L++ TL +L  + N   K  E
Sbjct: 486 NRVTEAGVRAL--LANRTLSSLGVSFNYCSKPTE 517


>gi|218960535|ref|YP_001740310.1| putative Phosphoprotein phosphatase [Candidatus Cloacamonas
            acidaminovorans]
 gi|167729192|emb|CAO80103.1| putative Phosphoprotein phosphatase [Candidatus Cloacamonas
            acidaminovorans str. Evry]
          Length = 3445

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 114/350 (32%), Positives = 179/350 (51%), Gaps = 51/350 (14%)

Query: 57   LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
            L  L+SL++   N I  SD+ PL+GLTNL+ L +  ++++D                   
Sbjct: 2943 LTNLQSLDLD-SNQI--SDLSPLAGLTNLQELYLYYNQISD------------------- 2980

Query: 117  CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
                   L  L+ L +L YL+L   Q+SD      + + +L+ L L +N+I D  L  L 
Sbjct: 2981 -------LSPLAELTNLQYLDLGGNQISD--LSPLAGLNNLQELYLYWNQIGD--LSPLA 3029

Query: 177  GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            GLTNL+ L+L S  I D  L  L  L NL  L+LS  Q+  S L  L+GLTNL+ + L +
Sbjct: 3030 GLTNLQELDLYSNQISD--LSPLAELTNLWYLDLSYNQI--SDLSPLAGLTNLQDLYLGW 3085

Query: 237  TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
              I+   L  LAGL++L+ LNL + QI+D  L+ L  LT L +L L+  +I+D   + L 
Sbjct: 3086 NQIN--YLSPLAGLTNLQVLNLYSNQISD--LSPLAELTNLQYLHLYYNQISD--LSPLT 3139

Query: 297  NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
               NL  L +    ++D  +  +  L++L  L+L  N  ++D  +  ++ LT L  L + 
Sbjct: 3140 GLTNLHYLYLAYNQISD--LSPLIGLTNLQYLHLYYN-QISD--ISPLAELTNLQYLWLD 3194

Query: 357  NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP-NLVSFRP 405
            +++I+   L  L  L NL  L L+   ++   +   QS  LP +  S+ P
Sbjct: 3195 SNQISD--LSPLAGLTNLWWLWLDGNPISYESMLLAQSWSLPWSTTSYNP 3242



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 108/320 (33%), Positives = 170/320 (53%), Gaps = 31/320 (9%)

Query: 82   LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
            LTNL+SL +  ++++D  ++ L GL  L  L L    +    L  L+ L +L YL+L   
Sbjct: 2312 LTNLQSLDLDSNQISD--LSPLAGLTNLLELYLLDNMINY--LSPLAGLTNLQYLDLGGN 2367

Query: 142  QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            Q+SD      + + +L+ L LG+N+I    L  L GLTNL+ L+L++  I +  +  L G
Sbjct: 2368 QISD--LSPLAGLTNLQDLYLGWNQIN--YLSPLAGLTNLQELDLNNNQISN--INPLAG 2421

Query: 202  LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
            L NL+ L L   Q+  S L  LSGLTNL+ + L +  IS+  +  LAGL++L+ L+L + 
Sbjct: 2422 LTNLQKLYLYYNQI--SDLSPLSGLTNLQYLLLEYNQISN--ISPLAGLTNLQVLDLYSN 2477

Query: 262  QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
            QI+D  L+ L  LT L +LDL   +I+D   + L    NL+ L +            I D
Sbjct: 2478 QISD--LSPLAELTNLWYLDLSYNQISD--LSPLVGLVNLQGLWLDN--------NQIND 2525

Query: 322  LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLT 378
            LS L  L   Q  +L    +  +S LTGL +L+   ++ ++I+   L  ++ L NL+ L 
Sbjct: 2526 LSPLIGLTNLQYLHLYYNQISDLSPLTGLTNLHYLYLAYNQISD--LSSVEGLTNLQELY 2583

Query: 379  LESCKVTANDIKRLQSRDLP 398
            L+   ++   +   QS  LP
Sbjct: 2584 LDYNPISYESMLLAQSWSLP 2603



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 19/230 (8%)

Query: 51   LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
            +++++G   L +L + +      SD+ PL+GL NL+ L +  ++++D  I+ L GL  L 
Sbjct: 1089 IISIEGAQYLTNLQVMYLYSNQISDLSPLAGLANLQELLLYANQISD--ISPLAGLNNLQ 1146

Query: 111  LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
             L L+   ++   L  L+ L +L  L L   Q+SD      + + +L+VL+L  N+I+  
Sbjct: 1147 YLLLQYNQISD--LSPLAGLTNLQNLILAYNQISD--ISPLAGLTNLQVLDLYSNQIS-- 1200

Query: 171  CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
             L  L GLTNL+ L L S  I D  L  L G+ NL+ + L + Q+  S L  L+GLTNL+
Sbjct: 1201 YLSPLAGLTNLQELYLHSNQISD--LSPLAGMTNLRVINLKNNQI--SDLSPLAGLTNLQ 1256

Query: 231  SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
             + L +  I+D  +  LAGL++L SLNL   QI+D     L+ L GLT+L
Sbjct: 1257 YLLLGWNKIND--ISPLAGLTNLWSLNLSYNQISD-----LSPLAGLTNL 1299



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 92/260 (35%), Positives = 131/260 (50%), Gaps = 44/260 (16%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            L+GL+NL  L    N       +   AGL NL +LDL    +I   +  L GL  L+ L 
Sbjct: 2375 LAGLTNLQDLYLGWNQI---NYLSPLAGLTNLQELDLNN-NQI-SNINPLAGLTNLQKLY 2429

Query: 65   IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
            + + N I  SD+ PLSGLTNL+ L +  +++  S I+ L GL  L +L+L    ++   L
Sbjct: 2430 LYY-NQI--SDLSPLSGLTNLQYLLLEYNQI--SNISPLAGLTNLQVLDLYSNQISD--L 2482

Query: 125  DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
              L+ L +L+YL+L+  Q+SD                          L  L GL NL+ L
Sbjct: 2483 SPLAELTNLWYLDLSYNQISD--------------------------LSPLVGLVNLQGL 2516

Query: 185  NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
             LD+  I D  L  L GL NL+ L L   Q+  S L  L+GLTNL  + L++  ISD  L
Sbjct: 2517 WLDNNQIND--LSPLIGLTNLQYLHLYYNQI--SDLSPLTGLTNLHYLYLAYNQISD--L 2570

Query: 245  RKLAGLSSLKSLNLDARQIT 264
              + GL++L+ L LD   I+
Sbjct: 2571 SSVEGLTNLQELYLDYNPIS 2590



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 45/283 (15%)

Query: 51   LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
            L  L GL  L+ L++   N I  SD+ PL+GLTNL+ L +  +++               
Sbjct: 2350 LSPLAGLTNLQYLDLGG-NQI--SDLSPLAGLTNLQDLYLGWNQIN-------------- 2392

Query: 111  LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
                         L  L+ L +L  L+LN  Q+S+      + + +L+ L L +N+I+D 
Sbjct: 2393 ------------YLSPLAGLTNLQELDLNNNQISN--INPLAGLTNLQKLYLYYNQISD- 2437

Query: 171  CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
             L  L GLTNL+ L L+   I +  +  L GL NL+ L+L   Q+  S L  L+ LTNL 
Sbjct: 2438 -LSPLSGLTNLQYLLLEYNQISN--ISPLAGLTNLQVLDLYSNQI--SDLSPLAELTNLW 2492

Query: 231  SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
             ++LS+  ISD  L  L GL +L+ L LD  QI D  L+ L  LT L +L L+  +I+D 
Sbjct: 2493 YLDLSYNQISD--LSPLVGLVNLQGLWLDNNQIND--LSPLIGLTNLQYLHLYYNQISD- 2547

Query: 291  GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
              + L    NL  L +    ++D  +  ++ L++L  L L  N
Sbjct: 2548 -LSPLTGLTNLHYLYLAYNQISD--LSSVEGLTNLQELYLDYN 2587



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 87/251 (34%), Positives = 137/251 (54%), Gaps = 20/251 (7%)

Query: 156  SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
            +L+V+ L  N+I+D  L  L GL NL+ L L +  I D  +  L GL NL+ L L   Q+
Sbjct: 1100 NLQVMYLYSNQISD--LSPLAGLANLQELLLYANQISD--ISPLAGLNNLQYLLLQYNQI 1155

Query: 216  GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
              S L  L+GLTNL+++ L++  ISD  +  LAGL++L+ L+L + QI+   L+ L  LT
Sbjct: 1156 --SDLSPLAGLTNLQNLILAYNQISD--ISPLAGLTNLQVLDLYSNQIS--YLSPLAGLT 1209

Query: 276  GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
             L  L L   +I+D   + L    NLR + +    ++D  +  +  L++L  L L  N  
Sbjct: 1210 NLQELYLHSNQISD--LSPLAGMTNLRVINLKNNQISD--LSPLAGLTNLQYLLLGWN-K 1264

Query: 336  LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 395
            + D  +  ++GLT L SLN+S ++I+   L  L  L NL  L L++  ++   +   QS 
Sbjct: 1265 IND--ISPLAGLTNLWSLNLSYNQISD--LSPLAGLTNLWYLYLDNNPISYESMLLSQSW 1320

Query: 396  DLP-NLVSFRP 405
             LP +  S+ P
Sbjct: 1321 ALPWSTSSYNP 1331



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 38/239 (15%)

Query: 51   LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
            +++++G     +L+  + +    S++ PL+GLTNLK L +  ++++D  I  L GL  ++
Sbjct: 1694 IISIEGAQYFTNLDSLYLSYNQISNLNPLAGLTNLKGLNLGSNQISD--INPLAGLTNIS 1751

Query: 111  LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
             L L G  ++     +++ L  L+                     +L+ L L +N+I+D 
Sbjct: 1752 WLFLFGNYIS-----NIAPLEGLY---------------------NLRNLQLHYNQISD- 1784

Query: 171  CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
             +  L  L ++  + L S  I D  +  L GL +L  LEL   Q+  + +  LSGL NL+
Sbjct: 1785 -ITPLAALIDIGGIALGSNQIVD--ITPLAGLTHLIGLELYHNQI--NNIDALSGLINLQ 1839

Query: 231  SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             + L    I D  +  LAGLS L+ L L+  QI D  ++ L+ L  L +L L+  +I+D
Sbjct: 1840 WLYLDGNQIID--ISPLAGLSILRELYLENNQIND--ISTLSELNNLQYLFLYNNQISD 1894



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 72/211 (34%), Positives = 110/211 (52%), Gaps = 30/211 (14%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            L+GL+NL  L    NN I+   +   AGL NL KL L    +I   L  L GL  L+ L 
Sbjct: 2397 LAGLTNLQELDLN-NNQIS--NINPLAGLTNLQKLYLYY-NQI-SDLSPLSGLTNLQYLL 2451

Query: 65   IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTL------------ 111
            +++ N I  S++ PL+GLTNL+ L +  ++++D S +A L  L  L L            
Sbjct: 2452 LEY-NQI--SNISPLAGLTNLQVLDLYSNQISDLSPLAELTNLWYLDLSYNQISDLSPLV 2508

Query: 112  --LNLEGCPVTAACLDSLS---ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
              +NL+G  +    ++ LS    L +L YL+L   Q+SD      + + +L  L L +N+
Sbjct: 2509 GLVNLQGLWLDNNQINDLSPLIGLTNLQYLHLYYNQISD--LSPLTGLTNLHYLYLAYNQ 2566

Query: 167  ITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
            I+D  L  ++GLTNL+ L LD   I  E ++
Sbjct: 2567 ISD--LSSVEGLTNLQELYLDYNPISYESML 2595



 Score = 47.0 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 26/179 (14%)

Query: 211  SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 270
            SD Q   + L+ L+G       NL   G +  S+     L++L+SL+LD+ QI+D  L+ 
Sbjct: 2911 SDYQPTIADLQGLAG-------NLHADGRNIISIEGAQYLTNLQSLDLDSNQISD--LSP 2961

Query: 271  LTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
            L  LT L  L L+  +I+D S  A L N + L           D G   I DLS L  LN
Sbjct: 2962 LAGLTNLQELYLYYNQISDLSPLAELTNLQYL-----------DLGGNQISDLSPLAGLN 3010

Query: 330  LSQNCNL---TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
              Q   L       L  ++GLT L  L++ +++I+   L  L  L NL  L L   +++
Sbjct: 3011 NLQELYLYWNQIGDLSPLAGLTNLQELDLYSNQISD--LSPLAELTNLWYLDLSYNQIS 3067



 Score = 42.0 bits (97), Expect = 0.56,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 42/198 (21%)

Query: 211  SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--- 267
            SD Q   + L+ L+G       NL   G +  S+     L++L+SL+LD+ QI+D     
Sbjct: 2280 SDYQPTIADLQGLAG-------NLHADGRNIISIEGAQYLTNLQSLDLDSNQISDLSPLA 2332

Query: 268  -----------------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
                             L+ L  LT L +LDL G +I+D   + L    NL+ L +    
Sbjct: 2333 GLTNLLELYLLDNMINYLSPLAGLTNLQYLDLGGNQISD--LSPLAGLTNLQDLYL---- 2386

Query: 311  LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI---SGLTGLVSLNVSNSRITSAGLRH 367
                G   I  LS L  L   Q  +L +  +  I   +GLT L  L +  ++I+   L  
Sbjct: 2387 ----GWNQINYLSPLAGLTNLQELDLNNNQISNINPLAGLTNLQKLYLYYNQISD--LSP 2440

Query: 368  LKPLKNLRSLTLESCKVT 385
            L  L NL+ L LE  +++
Sbjct: 2441 LSGLTNLQYLLLEYNQIS 2458


>gi|348514973|ref|XP_003445014.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oreochromis niloticus]
 gi|410918767|ref|XP_003972856.1| PREDICTED: F-box/LRR-repeat protein 14-like [Takifugu rubripes]
          Length = 400

 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           + G+ N++SL +S C  +TD+G+  A+++ +  L +LNL  C                  
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCK----------------- 128

Query: 136 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 191
                 Q++D    + ++ + +L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 129 ------QITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHV 182

Query: 192 GDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 240
            D G+ +L G+         NL+ L L D Q +    L+H+S GLT L  +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGIS 242

Query: 241 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-R 296
           D  +  L+ ++SL SLNL +   I+DTG   L   T  L+ LD+ F  +I D   AY+ +
Sbjct: 243 DAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFCDKIGDQTLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT LV ++
Sbjct: 303 GLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   ++IT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTKITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 150/303 (49%), Gaps = 50/303 (16%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLK-- 104
           ++G+  +ESLN+  C  +TD+ +    +  + +L+ L +S C ++TDS +     YLK  
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNL 145

Query: 105 ---------------------GLQKLTLLNLEGC-PVTAACLDSLSALG--------SLF 134
                                GL +L  LNL  C  V+   +  L+ +         +L 
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLE 205

Query: 135 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 190
           YL L  CQ L+D   +  SK +  L+VLNL F   I+D  ++HL  +T+L SLNL SC  
Sbjct: 206 YLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDN 265

Query: 191 IGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RK 246
           I D G ++L  G   L  L++S   ++G   L +++ GL  L+S++L    ISD  + R 
Sbjct: 266 ISDTGTMHLAMGTLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGINRM 325

Query: 247 LAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRS 303
           +  +  L++LN+    +ITD GL  +   LT L  +DL+G  +IT  G   +     L+ 
Sbjct: 326 VRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPCLKV 385

Query: 304 LEI 306
           L +
Sbjct: 386 LNL 388



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 22/232 (9%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L SL+ R    ++  G+   AG+        +NL  L L+ C ++    L ++ KG
Sbjct: 167 GLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKG 226

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L KL  LN+ +C  I+D+ M  LS +T+L SL + SC  ++D+G  +L  G  +L+ L++
Sbjct: 227 LTKLRVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDV 286

Query: 115 EGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEIT 168
             C        +L+ +    Y    L+L  C +SDDG  +  + +  L+ LN+G    IT
Sbjct: 287 SFCDKIGD--QTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRIT 344

Query: 169 DECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           D+ L  +   LT L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 345 DKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 396



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 126/245 (51%), Gaps = 32/245 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    R    
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 141

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 275
           L NLE + L   + I++  L  +A GL  LKSLNL + R ++D G+  L  +T       
Sbjct: 142 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201

Query: 276 -GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             L +L L    ++TD    ++ +    LR  +L  CGG ++DAG+ H+  ++SL  LNL
Sbjct: 202 LNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGG-ISDAGMIHLSHMTSLWSLNL 260

Query: 331 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 387
               N++D  T+ L  G   L  L+VS   +I    L ++ + L  L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGTMHLAMGTLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDD 320

Query: 388 DIKRL 392
            I R+
Sbjct: 321 GINRM 325


>gi|348503268|ref|XP_003439187.1| PREDICTED: hypothetical protein LOC100705990 [Oreochromis
           niloticus]
          Length = 894

 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 162/312 (51%), Gaps = 22/312 (7%)

Query: 100 IAYLKGLQKLTLLNLEGCPVTAACLDS-----------LSALGSLFYLNL-NRCQLSDDG 147
           +++ + L   TL    GCP+    L+S           L A  +L +L+L N   ++D G
Sbjct: 483 MSHERLLHPRTLELFFGCPIQKFVLNSYPYSTNELLRQLRAFTALKHLSLVNSPLITDSG 542

Query: 148 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCN- 204
               S +  L+ LNL   +++TD CL H+ GL NL  L+LD   + D G+V  L  + + 
Sbjct: 543 LCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLCFLSLDQTKVTDAGMVLYLQSVPSC 602

Query: 205 LKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           L  L L+ T V  + L  L + +  L  +++  T + D  L  LA +SSL++LNLD   +
Sbjct: 603 LSQLSLNQTAVTETTLAVLPTSVPQLRLLSIKQTKVKD--LTALAAMSSLQTLNLDGTGV 660

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIK 320
           T+  L  L +   LT L L G  + D G+  L+    L+   I   G   +TD+G+  + 
Sbjct: 661 TEASLEHLATHPALTSLTLVGIPVAD-GSHALQIISGLKLTRITLPGRHSVTDSGLSFLS 719

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
            L+ L+ L+L+    +TD+ +  +S LT L  L++SN+++T AGL  L+ ++ L+ L L+
Sbjct: 720 RLTLLSELDLTDYTQITDQGVSHLSTLTRLKKLSLSNTQVTDAGLPSLRCMQELQELCLD 779

Query: 381 SCKVTANDIKRL 392
              VT+  +  L
Sbjct: 780 RTAVTSRGVADL 791



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 182/355 (51%), Gaps = 39/355 (10%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           ++AF  L +L  ++    T    GL  L  L+KL+ LN+  C+ +TDS ++ ++GL NL 
Sbjct: 521 LRAFTALKHLSLVNSPLIT--DSGLCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLC 578

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
            L +  +KVTD+G+          +L L+  P   +CL  LS         LN+  +++ 
Sbjct: 579 FLSLDQTKVTDAGM----------VLYLQSVP---SCLSQLS---------LNQTAVTET 616

Query: 147 GCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
                 + +  L++L++   ++ D  L  L  +++L++LNLD  G+ +  L +L     L
Sbjct: 617 TLAVLPTSVPQLRLLSIKQTKVKD--LTALAAMSSLQTLNLDGTGVTEASLEHLATHPAL 674

Query: 206 KCLELSDTQV--GSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DAR 261
             L L    V  GS  L+ +SGL  L  I L     ++D  L  L+ L+ L  L+L D  
Sbjct: 675 TSLTLVGIPVADGSHALQIISGL-KLTRITLPGRHSVTDSGLSFLSRLTLLSELDLTDYT 733

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH-IK 320
           QITD G++ L++LT L  L L   ++TD+G   LR  + L+ L +    +T  GV   I 
Sbjct: 734 QITDQGVSHLSTLTRLKKLSLSNTQVTDAGLPSLRCMQELQELCLDRTAVTSRGVADLIT 793

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGL---TGLVSLNVSNSRITSAGLRHLKPLK 372
            L  L +L L+ +  + D  +    GL   + LV LN+S +RIT  GL++LK ++
Sbjct: 794 CLPHLQVLGLA-STQVGDNVVR--KGLIRCSQLVKLNLSRTRITDHGLKYLKQMR 845


>gi|290976637|ref|XP_002671046.1| predicted protein [Naegleria gruberi]
 gi|284084611|gb|EFC38302.1| predicted protein [Naegleria gruberi]
          Length = 350

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 161/318 (50%), Gaps = 8/318 (2%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I+++  ++   LINL +L +      +  +  L  L KL  LNI  C  IT+  ++ +
Sbjct: 12  NVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKCK-ITNLGIESM 70

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
            G+  L SL+IS + + DSG+  L  L +LT L+++   +       +S + +L  L++ 
Sbjct: 71  IGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQMKNLTDLSVG 130

Query: 140 RCQLSDDGCEKFSKIGSLKVL-NLGFNEITDECLVHLKGLTNLE---SLNLDSCGIGDEG 195
              + ++G  KF  I  LK L NL  + I    +  ++ +T+L+   SLN+    IGD G
Sbjct: 131 LNGIDEEGI-KF--ICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAG 187

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
              ++ +  LK L +  T +G  G + +S +TNL  +++S   + D   + ++GL+ L  
Sbjct: 188 AKVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLIK 247

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L +    I + G  +++ L  LT LD+    I   GA  L   K+L  L+I    + D+G
Sbjct: 248 LWISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIEDSG 307

Query: 316 VKHIKDLSSLTLLNLSQN 333
           VK++  +  L  LN+  N
Sbjct: 308 VKYLSKMKKLKHLNVYDN 325



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 143/288 (49%), Gaps = 2/288 (0%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           + +L  L+L    +++    S+  L +L  L++    +     E  SK+  L +LN+   
Sbjct: 1   MDQLKKLDLISNVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKC 60

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           +IT+  +  + G+  L SL +   GI D G+ +L  L  L  L++   ++ + G + +S 
Sbjct: 61  KITNLGIESMIGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQ 120

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFG 284
           + NL  +++   GI +  ++ +  L  L +L+  A QI    G+ ++TSL  L  L++  
Sbjct: 121 MKNLTDLSVGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGD 180

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             I D+GA  +   K L++L +    +   G K I ++++LT L++S N NL D+  +LI
Sbjct: 181 NWIGDAGAKVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISAN-NLGDEGAKLI 239

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           SGL  L+ L +S   I + G   +  L+ L  L +    +     K L
Sbjct: 240 SGLNQLIKLWISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSL 287



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 151/319 (47%), Gaps = 28/319 (8%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           T+++  L NLT LS   N+ I  + ++  + L  L  L++ +C   + G+ ++ G+ +L 
Sbjct: 19  TQSIGNLINLTELSIGYND-IGYKAVEYLSKLEKLTILNISKCKITNLGIESMIGMKQLT 77

Query: 62  SLNIKWCNCITDSDMKPL------------------------SGLTNLKSLQISCSKVTD 97
           SL I   N I DS +K L                        S + NL  L +  + + +
Sbjct: 78  SLEIS-ENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQMKNLTDLSVGLNGIDE 136

Query: 98  SGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 156
            GI ++  L++LT L+     + +   + S+++L  L  LN+    + D G +  S++  
Sbjct: 137 EGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAGAKVISEMKQ 196

Query: 157 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
           LK L +    I  +    +  +TNL  L++ +  +GDEG   ++GL  L  L +S+  +G
Sbjct: 197 LKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLIKLWISEISIG 256

Query: 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276
           + G   +S L  L  +++    I     + L+ L  L  L++    I D+G+  L+ +  
Sbjct: 257 NEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIEDSGVKYLSKMKK 316

Query: 277 LTHLDLFGARITDSGAAYL 295
           L HL+++   I D+G  YL
Sbjct: 317 LKHLNVYDNGI-DNGNKYL 334


>gi|283777859|ref|YP_003368614.1| serine/threonine protein kinase [Pirellula staleyi DSM 6068]
 gi|283436312|gb|ADB14754.1| serine/threonine protein kinase [Pirellula staleyi DSM 6068]
          Length = 1487

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 156/308 (50%), Gaps = 25/308 (8%)

Query: 56   GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 115
            G +K+  ++   C  I D D+KPL  L +L+SL +S +K+T +G+A L GL  L  ++L 
Sbjct: 864  GRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLANLHGLASLKSIDLG 923

Query: 116  GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN---------- 165
              P+T A +++L+A        L  C++  +  E   K+ +  VL++G            
Sbjct: 924  TLPLTTASVETLAA-------ALPDCKI--ERREPADKLVARWVLSVGGKCTITSDESAS 974

Query: 166  --EITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
              E+T    V  +   ++E +NL  C IG D  L ++  L NLK L L  + +  + L  
Sbjct: 975  QVELTSATTVLPEAAIHVEKINLTDCKIGPDAPLASIAELANLKSLLLVGSDITDAQLTS 1034

Query: 223  LSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
            ++GL +L  ++LS T ++  ++   LA L  L+ L L   ++    L A+T+L  L+HL 
Sbjct: 1035 IAGLKSLSELSLSDTAVTAPAVNGLLAQLPQLQRLYLSGTKVDRGVLVAVTNLPKLSHLS 1094

Query: 282  LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-T 340
            L G  +  S  + L+    L  L++   GL+D   + +  LSSL  L + +N  LTD   
Sbjct: 1095 LAGIEVAPSDLSLLKKCPQLEWLDLSSTGLSDEASQQLVGLSSLRELAVPKN-PLTDAGQ 1153

Query: 341  LELISGLT 348
             ELI+ + 
Sbjct: 1154 EELIAAMP 1161



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 162/348 (46%), Gaps = 47/348 (13%)

Query: 79   LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
            L+ L  L+ L +S +KV    +  +  L KL+ L+L G  V  + L  L     L +L+L
Sbjct: 1060 LAQLPQLQRLYLSGTKVDRGVLVAVTNLPKLSHLSLAGIEVAPSDLSLLKKCPQLEWLDL 1119

Query: 139  NRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLV------HLKG------------ 177
            +   LSD+  ++   + SL+ L +  N +TD   E L+      H+ G            
Sbjct: 1120 SSTGLSDEASQQLVGLSSLRELAVPKNPLTDAGQEELIAAMPNCHVVGDPLDPQRLAARW 1179

Query: 178  --------------LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
                          +T+ + L  D C +     ++L  L NLK  E+         ++ +
Sbjct: 1180 ILEKRGTVELDTGAVTSPKELPRDKCHVL---AIDLAELANLKAAEV---------IQVI 1227

Query: 224  SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
            +G + LES+ LS T I+D  L  +  L  LK L L    ITD GLA L  L  L  LD+ 
Sbjct: 1228 AGCSELESLRLSDTAITDADLAAIGKLKLLKKLYLANLAITDDGLAKLAELELLEVLDVS 1287

Query: 284  GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
            G RIT +G A  R+  +L+ L +    LTD  +  I  ++SL  L++S    ++D  L+ 
Sbjct: 1288 GGRITGAGLANFRSASSLQELNLSNTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKK 1347

Query: 344  ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
            ++GLT L SL +  +++T A    L     L  L L+S  +  + +++
Sbjct: 1348 LAGLTQLRSLGLRGTKLTDAAAESLASYAKLEQLDLDSTSIGDSGVEK 1395



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 10/238 (4%)

Query: 79   LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
            L+ L NLK+ ++         I  + G  +L  L L    +T A L ++  L  L  L L
Sbjct: 1212 LAELANLKAAEV---------IQVIAGCSELESLRLSDTAITDADLAAIGKLKLLKKLYL 1262

Query: 139  NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
                ++DDG  K +++  L+VL++    IT   L + +  ++L+ LNL +  + D  L  
Sbjct: 1263 ANLAITDDGLAKLAELELLEVLDVSGGRITGAGLANFRSASSLQELNLSNTMLTDPNLAA 1322

Query: 199  LTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
            +  + +L  L++S  + V  +GL+ L+GLT L S+ L  T ++D +   LA  + L+ L+
Sbjct: 1323 IAPMTSLISLDMSACRGVSDAGLKKLAGLTQLRSLGLRGTKLTDAAAESLASYAKLEQLD 1382

Query: 258  LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
            LD+  I D+G+  L SLT L  L L    +TD G A L   K+LRS+ +    +T+A 
Sbjct: 1383 LDSTSIGDSGVEKLLSLTSLRRLVLAKTSVTDGGVASLAKLKDLRSVSLVRTSVTEAA 1440



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 145/348 (41%), Gaps = 59/348 (16%)

Query: 95   VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 154
            VTDS +A L+    L  L+L   P+T   + SL+ L SL  L+L R  +++ G E  +++
Sbjct: 683  VTDSDLASLELAPGLRQLSLAATPITDTGIASLAKLKSLAKLSLARTAITNKGLESLARL 742

Query: 155  GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
              L  L+L   +ITD+ L  L  L+ LE L L    + D GL  L    +L+ L  S T 
Sbjct: 743  SQLAELDLSSTKITDQGLTRLLALSKLERLYLSDNSLSDNGLEQLAMAKSLRLLVASGTM 802

Query: 215  VGSSGLRHLSGLTNLESINLSFTG-------------------ISD--GSL------RKL 247
            +   G  H      L    +++ G                   ++D  G++      R+ 
Sbjct: 803  LSERG--HGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRGNIVPVVARRED 860

Query: 248  AGLSSLKSLNLD---ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
              +  LK L +D    R I D  L  L +L  L  L L G +IT +G A L    +L+S+
Sbjct: 861  LPIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLANLHGLASLKSI 920

Query: 305  EICGGGLTDAGVKHIK---------------DLSSLTLLNLSQNCNLTD----KTLELIS 345
            ++    LT A V+ +                 L +  +L++   C +T       +EL S
Sbjct: 921  DLGTLPLTTASVETLAAALPDCKIERREPADKLVARWVLSVGGKCTITSDESASQVELTS 980

Query: 346  GLTGLVSLNVSNSRI--------TSAGLRHLKPLKNLRSLTLESCKVT 385
              T L    +   +I          A L  +  L NL+SL L    +T
Sbjct: 981  ATTVLPEAAIHVEKINLTDCKIGPDAPLASIAELANLKSLLLVGSDIT 1028



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 4/141 (2%)

Query: 195  GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 253
            GL N     +L+ L LS+T +    L  ++ +T+L S+++S   G+SD  L+KLAGL+ L
Sbjct: 1295 GLANFRSASSLQELNLSNTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKKLAGLTQL 1354

Query: 254  KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
            +SL L   ++TD    +L S   L  LDL    I DSG   L +  +LR L +    +TD
Sbjct: 1355 RSLGLRGTKLTDAAAESLASYAKLEQLDLDSTSIGDSGVEKLLSLTSLRRLVLAKTSVTD 1414

Query: 314  AGV---KHIKDLSSLTLLNLS 331
             GV     +KDL S++L+  S
Sbjct: 1415 GGVASLAKLKDLRSVSLVRTS 1435



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 179/414 (43%), Gaps = 53/414 (12%)

Query: 22   ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
            IT  G+ + A L +L KL L R    + GL +L  L +L  L++     ITD  +  L  
Sbjct: 707  ITDTGIASLAKLKSLAKLSLARTAITNKGLESLARLSQLAELDLS-STKITDQGLTRLLA 765

Query: 82   LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS-LFYLNLNR 140
            L+ L+ L +S + ++D+G+  L   + L LL   G          LS  G  +    L +
Sbjct: 766  LSKLERLYLSDNSLSDNGLEQLAMAKSLRLLVASGT--------MLSERGHGVLTAALPQ 817

Query: 141  CQLSDDGCEKFSKIG--------SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-- 190
             +++ DG +   ++          L V ++  N +          +  L+ L +D  G  
Sbjct: 818  TEITWDGADMQRQVALVLLERGARLSVADMRGNIVPVVARREDLPIGRLKVLKVDFAGCR 877

Query: 191  -IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
             IGD+ L  L  L +L+ L LS T++  +GL +L GL +L+SI+L    ++  S+  LA 
Sbjct: 878  TIGDDDLKPLVALADLESLALSGTKITPAGLANLHGLASLKSIDLGTLPLTTASVETLA- 936

Query: 250  LSSLKSLNLDARQITDT----------GLAALTSLTGLTHLDLFGARI------------ 287
             ++L    ++ R+  D           G   +TS    + ++L  A              
Sbjct: 937  -AALPDCKIERREPADKLVARWVLSVGGKCTITSDESASQVELTSATTVLPEAAIHVEKI 995

Query: 288  --------TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
                     D+  A +    NL+SL + G  +TDA +  I  L SL+ L+LS        
Sbjct: 996  NLTDCKIGPDAPLASIAELANLKSLLLVGSDITDAQLTSIAGLKSLSELSLSDTAVTAPA 1055

Query: 340  TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
               L++ L  L  L +S +++    L  +  L  L  L+L   +V  +D+  L+
Sbjct: 1056 VNGLLAQLPQLQRLYLSGTKVDRGVLVAVTNLPKLSHLSLAGIEVAPSDLSLLK 1109



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 185/475 (38%), Gaps = 93/475 (19%)

Query: 4    NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
            +L+ L +L  LS  R  AIT +G+++ A L  L +LDL        GL  L  L KLE L
Sbjct: 714  SLAKLKSLAKLSLART-AITNKGLESLARLSQLAELDLSSTKITDQGLTRLLALSKLERL 772

Query: 64   NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
             +   N ++D+ ++ L+   +L+ L  S + +++ G   L      T +  +G  +    
Sbjct: 773  YLS-DNSLSDNGLEQLAMAKSLRLLVASGTMLSERGHGVLTAALPQTEITWDGADMQRQV 831

Query: 124  LDSLSALGSLFYLNLNRCQLSDDGCEKFS-KIGSLKVLNLGF---NEITDECLVHLKGLT 179
               L   G+   +   R  +      +    IG LKVL + F     I D+ L  L  L 
Sbjct: 832  ALVLLERGARLSVADMRGNIVPVVARREDLPIGRLKVLKVDFAGCRTIGDDDLKPLVALA 891

Query: 180  NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-------------- 225
            +LESL L    I   GL NL GL +LK ++L    + ++ +  L+               
Sbjct: 892  DLESLALSGTKITPAGLANLHGLASLKSIDLGTLPLTTASVETLAAALPDCKIERREPAD 951

Query: 226  ---------------LTNLES----------------------INLSFTGI-SDGSLRKL 247
                           +T+ ES                      INL+   I  D  L  +
Sbjct: 952  KLVARWVLSVGGKCTITSDESASQVELTSATTVLPEAAIHVEKINLTDCKIGPDAPLASI 1011

Query: 248  AGLSSLKSLNLDARQITDTGLAA-------------------------LTSLTGLTHLDL 282
            A L++LKSL L    ITD  L +                         L  L  L  L L
Sbjct: 1012 AELANLKSLLLVGSDITDAQLTSIAGLKSLSELSLSDTAVTAPAVNGLLAQLPQLQRLYL 1071

Query: 283  FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
             G ++       + N   L  L + G  +  + +  +K    L  L+LS +  L+D+  +
Sbjct: 1072 SGTKVDRGVLVAVTNLPKLSHLSLAGIEVAPSDLSLLKKCPQLEWLDLS-STGLSDEASQ 1130

Query: 343  LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN--DIKRLQSR 395
             + GL+ L  L V  + +T AG   L          + +C V  +  D +RL +R
Sbjct: 1131 QLVGLSSLRELAVPKNPLTDAGQEEL-------IAAMPNCHVVGDPLDPQRLAAR 1178



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 124/275 (45%), Gaps = 34/275 (12%)

Query: 156 SLKVLNLGFNE--ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
           SL++L + F    +TD  L  L+    L  L+L +  I D G+ +L  L +L  L L+ T
Sbjct: 670 SLEILAIDFEGRGVTDSDLASLELAPGLRQLSLAATPITDTGIASLAKLKSLAKLSLART 729

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
            + + GL  L+ L+ L  ++LS T I+D  L +L  LS L+ L L    ++D GL  L  
Sbjct: 730 AITNKGLESLARLSQLAELDLSSTKITDQGLTRLLALSKLERLYLSDNSLSDNGLEQLAM 789

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG----------LTDAGVK-HIKDL 322
              L  L   G  +++ G   L     L   EI   G          L + G +  + D+
Sbjct: 790 AKSLRLLVASGTMLSERGHGVL--TAALPQTEITWDGADMQRQVALVLLERGARLSVADM 847

Query: 323 SSLTLLNLSQNCNLT------------------DKTLELISGLTGLVSLNVSNSRITSAG 364
               +  +++  +L                   D  L+ +  L  L SL +S ++IT AG
Sbjct: 848 RGNIVPVVARREDLPIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAG 907

Query: 365 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
           L +L  L +L+S+ L +  +T   ++ L +  LP+
Sbjct: 908 LANLHGLASLKSIDLGTLPLTTASVETLAAA-LPD 941



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 78/155 (50%)

Query: 22   ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
            IT  G+  F    +L +L+L         L  +  +  L SL++  C  ++D+ +K L+G
Sbjct: 1291 ITGAGLANFRSASSLQELNLSNTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKKLAG 1350

Query: 82   LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
            LT L+SL +  +K+TD+    L    KL  L+L+   +  + ++ L +L SL  L L + 
Sbjct: 1351 LTQLRSLGLRGTKLTDAAAESLASYAKLEQLDLDSTSIGDSGVEKLLSLTSLRRLVLAKT 1410

Query: 142  QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             ++D G    +K+  L+ ++L    +T+     L+
Sbjct: 1411 SVTDGGVASLAKLKDLRSVSLVRTSVTEAACTELE 1445



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 7/154 (4%)

Query: 6    SGLSNLTSLSFRR-----NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMK 59
            +GL+N  S S  +     N  +T   + A A + +L+ LD+  C  +   GL  L GL +
Sbjct: 1294 AGLANFRSASSLQELNLSNTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKKLAGLTQ 1353

Query: 60   LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
            L SL ++    +TD+  + L+    L+ L +  + + DSG+  L  L  L  L L    V
Sbjct: 1354 LRSLGLRGTK-LTDAAAESLASYAKLEQLDLDSTSIGDSGVEKLLSLTSLRRLVLAKTSV 1412

Query: 120  TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
            T   + SL+ L  L  ++L R  +++  C +  K
Sbjct: 1413 TDGGVASLAKLKDLRSVSLVRTSVTEAACTELEK 1446


>gi|149918909|ref|ZP_01907395.1| hypothetical protein PPSIR1_16600 [Plesiocystis pacifica SIR-1]
 gi|149820283|gb|EDM79700.1| hypothetical protein PPSIR1_16600 [Plesiocystis pacifica SIR-1]
          Length = 1503

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 117/236 (49%), Gaps = 12/236 (5%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGI---AYLKGLQKLTLLNLEGCPVTAACLDSL 127
           I D+ ++ LS LT L+ L +S + +T +G+   +++ GL +L+L + +G     A  + L
Sbjct: 90  IDDAMVEVLSKLTGLQILDLSRNAITATGVESLSWIGGLTQLSLRSNQGVGDRGA--EIL 147

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           ++L SL  LNL+RC +   G +   K+G L+ L L  N I DE  V L  L  L  L L 
Sbjct: 148 ASLRSLEVLNLDRCGIGPIGAQALGKLGELRELVLSHNRILDEGAVALAKLAKLRELELS 207

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRK 246
            C +GDEG   L  L  L+ L L    VG       +G L  L+ + L+   + +   R 
Sbjct: 208 VCQLGDEGAAALAKLRALEILRLGGNHVGPKAAAAFAGHLDKLQELELAVNQVGEEGARS 267

Query: 247 LAG-LSSLKSLNLDARQITDTGLAALTSLTG-----LTHLDLFGARITDSGAAYLR 296
           L+G L  L+ L+L   +I D GL  L    G     L HLDL    IT    + LR
Sbjct: 268 LSGMLGHLRRLDLSYNKIGDAGLEGLLQPWGKRRVALEHLDLIENGITLVSPSVLR 323



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 75/256 (29%), Positives = 115/256 (44%), Gaps = 37/256 (14%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMK 59
           M E LS L+ L  L   RN AITA G+++ + +  L +L L     +   G   L  L  
Sbjct: 94  MVEVLSKLTGLQILDLSRN-AITATGVESLSWIGGLTQLSLRSNQGVGDRGAEILASLRS 152

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           LE LN+  C  I     + L  L  L+ L +S +++ D G                    
Sbjct: 153 LEVLNLDRCG-IGPIGAQALGKLGELRELVLSHNRILDEGAV------------------ 193

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-L 178
                 +L+ L  L  L L+ CQL D+G    +K+ +L++L LG N +  +      G L
Sbjct: 194 ------ALAKLAKLRELELSVCQLGDEGAAALAKLRALEILRLGGNHVGPKAAAAFAGHL 247

Query: 179 TNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHL--------SGLTNL 229
             L+ L L    +G+EG  +L+G L +L+ L+LS  ++G +GL  L          L +L
Sbjct: 248 DKLQELELAVNQVGEEGARSLSGMLGHLRRLDLSYNKIGDAGLEGLLQPWGKRRVALEHL 307

Query: 230 ESINLSFTGISDGSLR 245
           + I    T +S   LR
Sbjct: 308 DLIENGITLVSPSVLR 323



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 119/269 (44%), Gaps = 13/269 (4%)

Query: 140 RCQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           RC +S  G +  + +      L+ L L   +I D  +  L  LT L+ L+L    I   G
Sbjct: 59  RCFVSGFGADVLAALVERGQGLERLALVALDIDDAMVEVLSKLTGLQILDLSRNAITATG 118

Query: 196 LVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           + +L+ +  L  L L   Q VG  G   L+ L +LE +NL   GI     + L  L  L+
Sbjct: 119 VESLSWIGGLTQLSLRSNQGVGDRGAEILASLRSLEVLNLDRCGIGPIGAQALGKLGELR 178

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL-TD 313
            L L   +I D G  AL  L  L  L+L   ++ D GAA L   + L  L + G  +   
Sbjct: 179 ELVLSHNRILDEGAVALAKLAKLRELELSVCQLGDEGAAALAKLRALEILRLGGNHVGPK 238

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG-LVSLNVSNSRITSAGLRHLKPLK 372
           A       L  L  L L+ N  + ++    +SG+ G L  L++S ++I  AGL  L    
Sbjct: 239 AAAAFAGHLDKLQELELAVN-QVGEEGARSLSGMLGHLRRLDLSYNKIGDAGLEGLLQPW 297

Query: 373 NLRSLTLESCKVTANDI-----KRLQSRD 396
             R + LE   +  N I       L++RD
Sbjct: 298 GKRRVALEHLDLIENGITLVSPSVLRTRD 326


>gi|290982059|ref|XP_002673748.1| predicted protein [Naegleria gruberi]
 gi|284087334|gb|EFC41004.1| predicted protein [Naegleria gruberi]
          Length = 370

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 149/329 (45%), Gaps = 3/329 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L  +  L  L+   NN I   G+K    L  L  L++  C  I   L +L  L  L  LN
Sbjct: 27  LDSMKELKKLNLEYNN-IDPNGIKYLGSLKQLTDLNV-SCCYIGLNLSHLILLKALTHLN 84

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I     K +  +  L  L I  + +   G  Y+ GL++LT LN+    +     
Sbjct: 85  I-TSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISGLEQLTYLNIRSNDIKKDGA 143

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             +S +  L YLN+    + D G    S++  L  L++G+N+I +E   ++  L N+  L
Sbjct: 144 KHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYNDIGEEGAKYISELMNVSIL 203

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           ++    I ++G   +  +  L  L +    +G  G +++S L  L  +++S   I D   
Sbjct: 204 DIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISSLNQLTHLSISTNNIGDEGA 263

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + +  +  L  L++   +I   G  ++  L  L +L + G  I D+GA ++     L  L
Sbjct: 264 KYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLYISGNEIGDNGAQFISEMNQLTIL 323

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           +I    +T  G+K+I ++  LT L +  N
Sbjct: 324 DISSINITPIGIKYISNMEYLTDLRIIDN 352



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 152/322 (47%), Gaps = 2/322 (0%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           +++ L  +  LK L +  + +  +GI YL  L++LT LN+  C +    L  L  L +L 
Sbjct: 23  NLQVLDSMKELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCCYI-GLNLSHLILLKALT 81

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           +LN+    +  +G +   ++  L  L++G N+I  E   ++ GL  L  LN+ S  I  +
Sbjct: 82  HLNITSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISGLEQLTYLNIRSNDIKKD 141

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           G  +++ +  L  L +    +   G R +S +  L ++++ +  I +   + ++ L ++ 
Sbjct: 142 GAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYNDIGEEGAKYISELMNVS 201

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
            L++    I + G   +  +  LT L ++   I   G  Y+ +   L  L I    + D 
Sbjct: 202 ILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISSLNQLTHLSISTNNIGDE 261

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
           G K+I  +  LT L++ +N  +  +  + I  L  L++L +S + I   G + +  +  L
Sbjct: 262 GAKYIGQMKQLTDLSIREN-KIGIEGAKSIGQLKNLLNLYISGNEIGDNGAQFISEMNQL 320

Query: 375 RSLTLESCKVTANDIKRLQSRD 396
             L + S  +T   IK + + +
Sbjct: 321 TILDISSINITPIGIKYISNME 342



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 144/306 (47%), Gaps = 2/306 (0%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           L N+ +L +  +      +  L  +++L  LNLE   +    +  L +L  L  LN++ C
Sbjct: 6   LENIANLAVRMNGEIGFNLQVLDSMKELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCC 65

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            +  +       + +L  LN+  N I  E   ++  +  L  L++ S  IG EG   ++G
Sbjct: 66  YIGLN-LSHLILLKALTHLNITSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISG 124

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L  L  L +    +   G +H+S +  L  +N+    I DG  R ++ +  L +L++   
Sbjct: 125 LEQLTYLNIRSNDIKKDGAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYN 184

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
            I + G   ++ L  ++ LD+ G  I + GA ++   K L  L I    +   G ++I  
Sbjct: 185 DIGEEGAKYISELMNVSILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISS 244

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           L+ LT L++S N N+ D+  + I  +  L  L++  ++I   G + +  LKNL +L +  
Sbjct: 245 LNQLTHLSISTN-NIGDEGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLYISG 303

Query: 382 CKVTAN 387
            ++  N
Sbjct: 304 NEIGDN 309


>gi|255523038|ref|ZP_05390010.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
 gi|255513153|gb|EET89421.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
          Length = 421

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/246 (35%), Positives = 131/246 (53%), Gaps = 22/246 (8%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113
           ++GL+ L+SL + +C      D+ PL GLTNLK L +    +TD  I+ LKGL  L  L 
Sbjct: 186 IEGLVNLQSLTLTYCQI---EDISPLKGLTNLKELMLYDDNITD--ISPLKGLTNLEFLE 240

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           L G  +T   + SL  L  L  ++L   ++ D       ++ +L+ LNL +N+ITD  + 
Sbjct: 241 LYGNQITD--IPSLEGLTKLKDIDLGNNKIHD--ITLLRELSNLQELNLVYNKITD--IS 294

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            LK LTNL SL+LD+  I D  +  L  L NLK L L   ++  + +  L GLTNL S+ 
Sbjct: 295 SLKELTNLNSLDLDNNNISD--ISPLEKLSNLKSLSLGSNKI--TDISSLKGLTNLNSLV 350

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L    I+D  +  L GL++L  LNL + +I+D     ++ L GLT+L     + T +   
Sbjct: 351 LDDNNITD--ISPLKGLTNLNFLNLGSNKISD-----ISPLEGLTNLSTLWLKDTPTNEV 403

Query: 294 YLRNFK 299
           Y    K
Sbjct: 404 YKEKLK 409



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 119/223 (53%), Gaps = 22/223 (9%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
           +L+ L L + +I D  +  LKGLTNL+ L L    I D  +  L GL NL+ LEL   Q+
Sbjct: 191 NLQSLTLTYCQIED--ISPLKGLTNLKELMLYDDNITD--ISPLKGLTNLEFLELYGNQI 246

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
             + +  L GLT L+ I+L    I D +L  L  LS+L+ LNL   +ITD  +++L  LT
Sbjct: 247 --TDIPSLEGLTKLKDIDLGNNKIHDITL--LRELSNLQELNLVYNKITD--ISSLKELT 300

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            L  LDL    I+D     L    NL+SL +    +TD  +  +K L++L  L L  N N
Sbjct: 301 NLNSLDLDNNNISDISP--LEKLSNLKSLSLGSNKITD--ISSLKGLTNLNSLVLDDN-N 355

Query: 336 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           +TD     IS L GL +LN  N  + S  +  + PL+ L +L+
Sbjct: 356 ITD-----ISPLKGLTNLNFLN--LGSNKISDISPLEGLTNLS 391



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 124/251 (49%), Gaps = 23/251 (9%)

Query: 149 EKFSKIGSLKVLNLGFNEITDECLVHLKGL------TNLESLNLDSCGIGDEGLVNLTGL 202
           EK  +I   K  N    E +++ +V    +        ++    D   +    + N+T L
Sbjct: 108 EKNKQIKEGKTFNFKIKETSEKPIVFKDSVFERLIRNKIQVNKPDWETLNKSDVENITEL 167

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
               C   SD  +    +  + GL NL+S+ L++  I D  +  L GL++LK L L    
Sbjct: 168 MEQNCGIKSDNTIKY--INGIEGLVNLQSLTLTYCQIED--ISPLKGLTNLKELMLYDDN 223

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
           ITD  ++ L  LT L  L+L+G +ITD  +  L     L+ +++    + D  +  +++L
Sbjct: 224 ITD--ISPLKGLTNLEFLELYGNQITDIPS--LEGLTKLKDIDLGNNKIHDITL--LREL 277

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
           S+L  LNL  N  +TD  +  +  LT L SL++ N+ I  + +  L+ L NL+SL+L S 
Sbjct: 278 SNLQELNLVYN-KITD--ISSLKELTNLNSLDLDNNNI--SDISPLEKLSNLKSLSLGSN 332

Query: 383 KVTANDIKRLQ 393
           K+T  DI  L+
Sbjct: 333 KIT--DISSLK 341



 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 32/192 (16%)

Query: 4   NLSGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           ++S L  LT+L F     N IT   + +  GL  L  +DL    +IH  +  L+ L  L+
Sbjct: 226 DISPLKGLTNLEFLELYGNQIT--DIPSLEGLTKLKDIDLGN-NKIHD-ITLLRELSNLQ 281

Query: 62  SLNIKWCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIA 101
            LN+ + N ITD                    SD+ PL  L+NLKSL +  +K+TD  I+
Sbjct: 282 ELNLVY-NKITDISSLKELTNLNSLDLDNNNISDISPLEKLSNLKSLSLGSNKITD--IS 338

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVL 160
            LKGL  L  L L+   +T   +  L  L +L +LNL   ++SD    E  + + +L + 
Sbjct: 339 SLKGLTNLNSLVLDDNNITD--ISPLKGLTNLNFLNLGSNKISDISPLEGLTNLSTLWLK 396

Query: 161 NLGFNEITDECL 172
           +   NE+  E L
Sbjct: 397 DTPTNEVYKEKL 408


>gi|432942786|ref|XP_004083072.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryzias latipes]
          Length = 400

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 172/336 (51%), Gaps = 44/336 (13%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           + G+ N++SL +S C  +TD+G+  A+++ +  L +LNL  C          S+LG +  
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITD-----SSLGRIAQ 140

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDE 194
              N   L   GC   +  G L V                 GL  L+SLNL SC  + D 
Sbjct: 141 YLKNLEMLELGGCSNITNTGLLLVA---------------WGLHRLKSLNLRSCRHVSDV 185

Query: 195 GLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGS 243
           G+ +L G+         NL+ L L D Q +    L+H+S GLT L  +NLSF G ISD  
Sbjct: 186 GIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGISDAG 245

Query: 244 LRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNF 298
           +  L+ + SL SLNL +   I+DTG    A+ SL  L+ LD+ F  +I D   AY+ +  
Sbjct: 246 MIHLSHMGSLWSLNLRSCDNISDTGTMHLAMGSLR-LSGLDVSFCDKIGDQTLAYIAQGL 304

Query: 299 KNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVS 356
             L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT LV +++ 
Sbjct: 305 YQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLY 364

Query: 357 N-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
             ++IT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 365 GCTKITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 125/245 (51%), Gaps = 32/245 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    R    
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 141

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 275
           L NLE + L   + I++  L  +A GL  LKSLNL + R ++D G+  L  +T       
Sbjct: 142 LKNLEMLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201

Query: 276 -GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             L +L L    ++TD    ++ +    LR  +L  CGG ++DAG+ H+  + SL  LNL
Sbjct: 202 LNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGG-ISDAGMIHLSHMGSLWSLNL 260

Query: 331 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 387
               N++D  T+ L  G   L  L+VS   +I    L ++ + L  L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDD 320

Query: 388 DIKRL 392
            I R+
Sbjct: 321 GINRM 325



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 115/232 (49%), Gaps = 22/232 (9%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L SL+ R    ++  G+   AG+        +NL  L L+ C ++    L ++ KG
Sbjct: 167 GLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKG 226

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L KL  LN+ +C  I+D+ M  LS + +L SL + SC  ++D+G  +L  G  +L+ L++
Sbjct: 227 LTKLRVLNLSFCGGISDAGMIHLSHMGSLWSLNLRSCDNISDTGTMHLAMGSLRLSGLDV 286

Query: 115 EGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEIT 168
             C        +L+ +    Y    L+L  C +SDDG  +  + +  L+ LN+G    IT
Sbjct: 287 SFCDKIGD--QTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRIT 344

Query: 169 DECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           D+ L  +   LT L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 345 DKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 396


>gi|374586212|ref|ZP_09659304.1| hypothetical protein Lepil_2392 [Leptonema illini DSM 21528]
 gi|373875073|gb|EHQ07067.1| hypothetical protein Lepil_2392 [Leptonema illini DSM 21528]
          Length = 346

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 2/244 (0%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
             LV+L G   L+ LN+     ITD+ +K +  +  L+ L ++ +K+TD+G+A L GL +
Sbjct: 88  AALVHLAGFKHLKELNLS-TGPITDAGLKSIGQIKTLEKLDLAETKITDAGVADLVGLSR 146

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L  L+L    VT AC+ S+  + SL  L LN   ++D G E+  +   L+ L LG   +T
Sbjct: 147 LKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGITDRGVEQLIQHQRLRKLILGGTAVT 206

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH-LSGLT 227
           DE + ++  + NL+        I  +GLV L    NL+ L L+DT V    L   L    
Sbjct: 207 DESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQAKNLRRLWLADTSVDDDDLIELLQPPM 266

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
            L+ ++L    I+  ++  +A  + +K L +   +I +  L  L   T L  + +   R+
Sbjct: 267 ELDMLHLGHLKITGKTMEAIARCNCVKDLYVGYTKIGNDDLLKLIPATRLKSITVTKTRV 326

Query: 288 TDSG 291
           TD G
Sbjct: 327 TDDG 330



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 127/267 (47%), Gaps = 26/267 (9%)

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
           +D    +   +  L+ L+LG    TD  LVHL G  +L+ LNL +  I D GL ++  + 
Sbjct: 62  TDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLKELNLSTGPITDAGLKSIGQIK 121

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
            L+ L+L++T++  +G+  L GL+ L+ ++L  T ++D  +  +  + SL+ L L+   I
Sbjct: 122 TLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGI 181

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAY------------------------LRNFK 299
           TD G+  L     L  L L G  +TD    Y                        LR  K
Sbjct: 182 TDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQAK 241

Query: 300 NLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
           NLR L +    + D   ++ ++    L +L+L  +  +T KT+E I+    +  L V  +
Sbjct: 242 NLRRLWLADTSVDDDDLIELLQPPMELDMLHLG-HLKITGKTMEAIARCNCVKDLYVGYT 300

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVT 385
           +I +  L  L P   L+S+T+   +VT
Sbjct: 301 KIGNDDLLKLIPATRLKSITVTKTRVT 327



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 174 HLKGLTNLE---SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
            LKG+T  E     +  + G  D  +  L  +  L+ L L       + L HL+G  +L+
Sbjct: 41  QLKGVTMAEIRAVKDWYALGATDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLK 100

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
            +NLS   I+D  L+ +  + +L+ L+L   +ITD G+A L  L+ L  L L    +TD+
Sbjct: 101 ELNLSTGPITDAGLKSIGQIKTLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDA 160

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
               +   K+L  L++   G+TD GV+ +     L  L L     +TD+++  ++ +  L
Sbjct: 161 CMTSIMQMKSLEILQLNMTGITDRGVEQLIQHQRLRKLILG-GTAVTDESVGYVAQIANL 219

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
                S ++I   GL  L+  KNLR L L    V  +D+  L
Sbjct: 220 DEAVFSRTKIRGKGLVRLRQAKNLRRLWLADTSVDDDDLIEL 261



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 2/221 (0%)

Query: 53  NLKGLMKLESLNIK-WCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
            LKG+   E   +K W     TD++M  L  +  L+ L +     TD+ + +L G + L 
Sbjct: 41  QLKGVTMAEIRAVKDWYALGATDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLK 100

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
            LNL   P+T A L S+  + +L  L+L   +++D G      +  LK L+L    +TD 
Sbjct: 101 ELNLSTGPITDAGLKSIGQIKTLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDA 160

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
           C+  +  + +LE L L+  GI D G+  L     L+ L L  T V    + +++ + NL+
Sbjct: 161 CMTSIMQMKSLEILQLNMTGITDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLD 220

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
               S T I    L +L    +L+ L L    + D  L  L
Sbjct: 221 EAVFSRTKIRGKGLVRLRQAKNLRRLWLADTSVDDDDLIEL 261



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 119/240 (49%), Gaps = 5/240 (2%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +L+G  +L  L+      IT  G+K+   +  L KLDL        G+ +L GL +L+ L
Sbjct: 92  HLAGFKHLKELNLS-TGPITDAGLKSIGQIKTLEKLDLAETKITDAGVADLVGLSRLKDL 150

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           ++     +TD+ M  +  + +L+ LQ++ + +TD G+  L   Q+L  L L G  VT   
Sbjct: 151 SLI-DTAVTDACMTSIMQMKSLEILQLNMTGITDRGVEQLIQHQRLRKLILGGTAVTDES 209

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLE 182
           +  ++ + +L     +R ++   G  +  +  +L+ L L    + D+ L+  L+    L+
Sbjct: 210 VGYVAQIANLDEAVFSRTKIRGKGLVRLRQAKNLRRLWLADTSVDDDDLIELLQPPMELD 269

Query: 183 SLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            L+L    I  + +  +   CN +K L +  T++G+  L  L   T L+SI ++ T ++D
Sbjct: 270 MLHLGHLKITGKTMEAI-ARCNCVKDLYVGYTKIGNDDLLKLIPATRLKSITVTKTRVTD 328


>gi|290991272|ref|XP_002678259.1| predicted protein [Naegleria gruberi]
 gi|284091871|gb|EFC45515.1| predicted protein [Naegleria gruberi]
          Length = 434

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 156/320 (48%), Gaps = 9/320 (2%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           S++   S L  L  L ++ +++ D  +  +  L+ LTLL L G  ++   +  +S L  L
Sbjct: 36  SEIDKFSRLDQLTELNVNWNRLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQLSEL 95

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             L++    + ++G      +  L  LN+    IT E +  +  L+NL  L++    IG 
Sbjct: 96  TKLSVGLNSIENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGA 155

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
           EG   +  L NLK L  SD ++G  G + +  +  L S+ L    I +   + ++ LS L
Sbjct: 156 EGGQYIGELKNLKTLVASDNELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQL 215

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD---SGAAYLRNFKNLRSLEICGGG 310
             L+L   +I D G   L  L  LT+LDL    I+D   +G   L N  ++R  +I    
Sbjct: 216 TDLDLGKNEIGDEGFKLLAKLEKLTNLDLVSNNISDLSSTGQLGLLNCLDVRKNKI---- 271

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
             D G+++I  LS L  L L  N  +T +  +++S +  L +L++S + I   G + +  
Sbjct: 272 -EDKGIRNICQLSGLQSLRLCANP-ITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQ 329

Query: 371 LKNLRSLTLESCKVTANDIK 390
           L  L+ L + + ++TAN +K
Sbjct: 330 LTTLKYLDISTKRITANGVK 349



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 166/350 (47%), Gaps = 28/350 (8%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           +L  LN+ W N + D D++ +  L NL  L++S ++++ + + ++  L +LT L++    
Sbjct: 46  QLTELNVNW-NRLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNS 104

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +    ++S+  L  L  LN+    ++ +G +   K+ +L +L++  N I  E   ++  L
Sbjct: 105 IENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGEL 164

Query: 179 TNLESL----------NLDSCG--------------IGDEGLVNLTGLCNLKCLELSDTQ 214
            NL++L             S G              IG+EG   ++ L  L  L+L   +
Sbjct: 165 KNLKTLVASDNELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNE 224

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           +G  G + L+ L  L +++L    ISD  L     L  L  L++   +I D G+  +  L
Sbjct: 225 IGDEGFKLLAKLEKLTNLDLVSNNISD--LSSTGQLGLLNCLDVRKNKIEDKGIRNICQL 282

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           +GL  L L    IT  GA  L     L +L I    + D G K I  L++L  L++S   
Sbjct: 283 SGLQSLRLCANPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTK- 341

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
            +T   ++ I  L+ L+SL+++ + I   G+ ++  ++ L +L    C +
Sbjct: 342 RITANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNI 391



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 167/356 (46%), Gaps = 28/356 (7%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
            E++  L NLT L     N I+   MK  + L  L KL +   +  + G+ ++  L KL 
Sbjct: 62  VESIGNLKNLTLLELS-GNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLSKLT 120

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            LNI   N IT   +K +  L+NL  L IS + +   G  Y+  L+ L  L      +  
Sbjct: 121 CLNIINAN-ITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELKNLKTLVASDNELGV 179

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGL 178
               S+  +  L  L L    + ++G +  S++  L  L+LG NEI DE    L  L+ L
Sbjct: 180 LGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNEIGDEGFKLLAKLEKL 239

Query: 179 TNLESL-----NLDSCG--------------IGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           TNL+ +     +L S G              I D+G+ N+  L  L+ L L    + S G
Sbjct: 240 TNLDLVSNNISDLSSTGQLGLLNCLDVRKNKIEDKGIRNICQLSGLQSLRLCANPITSEG 299

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
            + LS +  L ++++S T I D   + +A L++LK L++  ++IT  G+  +  L+ L  
Sbjct: 300 AKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLIS 359

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           LD+    I D G  Y+   + L +L    C  GL   G K + ++  LT+L++  N
Sbjct: 360 LDINWNNIGDEGVLYISRMQQLETLNAVYCNIGL--EGAKLLSEMEQLTVLDVKIN 413



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 147/322 (45%), Gaps = 26/322 (8%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE------RCTRIHGGLVNLKGLM--- 58
           LS LT L+    N IT++G+K    L NL  LD+          +  G L NLK L+   
Sbjct: 116 LSKLTCLNIINAN-ITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELKNLKTLVASD 174

Query: 59  -KLESLNIKWC-------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 104
            +L  L  K               N I +   K +S L+ L  L +  +++ D G   L 
Sbjct: 175 NELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNEIGDEGFKLLA 234

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
            L+KLT  NL+      + L S   LG L  L++ + ++ D G     ++  L+ L L  
Sbjct: 235 KLEKLT--NLDLVSNNISDLSSTGQLGLLNCLDVRKNKIEDKGIRNICQLSGLQSLRLCA 292

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           N IT E    L  +  L +L++    I DEG   +  L  LK L++S  ++ ++G++ + 
Sbjct: 293 NPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFIC 352

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
            L+ L S+++++  I D  +  ++ +  L++LN     I   G   L+ +  LT LD+  
Sbjct: 353 QLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKI 412

Query: 285 ARITDSGAAYLRNFKNLRSLEI 306
            RI   G   L N    +SL +
Sbjct: 413 NRIPGEGIQLLENIARFKSLVV 434



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 120/249 (48%), Gaps = 20/249 (8%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLE-------------------SLNLDSCGIGDEGL 196
           +L  LN+ +N+I+++  + L G+ +L+                    LN++   + DE +
Sbjct: 3   NLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEIDKFSRLDQLTELNVNWNRLKDEDV 62

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
            ++  L NL  LELS  ++  + ++ +S L+ L  +++    I +  +  +  LS L  L
Sbjct: 63  ESIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLSKLTCL 122

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
           N+    IT  G+  +  L+ LT LD+ G  I   G  Y+   KNL++L      L   G 
Sbjct: 123 NIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELKNLKTLVASDNELGVLGA 182

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
           K I +++ LT L L  N  + ++  + IS L+ L  L++  + I   G + L  L+ L +
Sbjct: 183 KSIGEMNQLTSLCLIGNS-IGNEGAKYISQLSQLTDLDLGKNEIGDEGFKLLAKLEKLTN 241

Query: 377 LTLESCKVT 385
           L L S  ++
Sbjct: 242 LDLVSNNIS 250



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 96/201 (47%), Gaps = 30/201 (14%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           + NL  LN+D   I ++  + L+G+ +LK L  S +++                      
Sbjct: 1   MKNLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEI---------------------- 38

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
                   K + L  L  LN++  ++ D  + ++ +L  LT L+L G  I+ +   ++  
Sbjct: 39  -------DKFSRLDQLTELNVNWNRLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQ 91

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
              L  L +    + + G+  I +LS LT LN+  N N+T + ++LI  L+ L  L++S 
Sbjct: 92  LSELTKLSVGLNSIENEGINSIINLSKLTCLNII-NANITSEGVKLIGKLSNLTILDISG 150

Query: 358 SRITSAGLRHLKPLKNLRSLT 378
           + I + G +++  LKNL++L 
Sbjct: 151 NLIGAEGGQYIGELKNLKTLV 171


>gi|290970038|ref|XP_002668017.1| predicted protein [Naegleria gruberi]
 gi|284081041|gb|EFC35273.1| predicted protein [Naegleria gruberi]
          Length = 306

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 131/271 (48%), Gaps = 26/271 (9%)

Query: 63  LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           +N+K    + DS   +K +S +  L SL IS +++   G+ ++ G+++LT L++      
Sbjct: 55  INLKVFRYLLDSFEKLKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDI------ 108

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
                           + N  Q SD+G +  S++  L  L +  N I DE   ++  +  
Sbjct: 109 ----------------SFN--QASDEGAKYISEMKQLTSLGISKNLIGDEGAKYISEMKQ 150

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L SLNL    I DEG   ++ +  L  L++S   +   G++ +  +  L S+N+ + GI 
Sbjct: 151 LTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLIDVEGVKFIKEMKQLTSLNIYYNGIG 210

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
               + ++ +  L SLN+   +I D G   ++ +  L  L +   +I D GA Y+   + 
Sbjct: 211 VEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQLISLIISRNQIGDEGAKYICEMEQ 270

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
           L SL I G  + D G K+I D+  LT L++S
Sbjct: 271 LTSLNISGNEIGDEGAKYISDMKQLTSLDIS 301



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 120/236 (50%), Gaps = 9/236 (3%)

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
           E L  +  +  L SL++    IG +G+  ++G+  L  L++S  Q    G +++S +  L
Sbjct: 68  EKLKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQL 127

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
            S+ +S   I D   + ++ +  L SLNL   +I D G   ++ +  LT LD+    I  
Sbjct: 128 TSLGISKNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLIDV 187

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
            G  +++  K L SL I   G+   G K+I ++  LT LN++ N  + D+  + IS +  
Sbjct: 188 EGVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNN-EIGDEGAKYISEMKQ 246

Query: 350 LVSLNVSNSRITSAGLRHLKPLKNLRSLTL-------ESCKVTANDIKRLQSRDLP 398
           L+SL +S ++I   G +++  ++ L SL +       E  K  + D+K+L S D+ 
Sbjct: 247 LISLIISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAKYIS-DMKQLTSLDIS 301



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 1/233 (0%)

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L  +S +  L  L+++  Q+   G +  S +  L  L++ FN+ +DE   ++  +  L S
Sbjct: 70  LKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQLTS 129

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           L +    IGDEG   ++ +  L  L L   ++   G +++S +  L S+++S   I    
Sbjct: 130 LGISKNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLIDVEG 189

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           ++ +  +  L SLN+    I   G   ++ +  LT L++    I D GA Y+   K L S
Sbjct: 190 VKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQLIS 249

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           L I    + D G K+I ++  LT LN+S N  + D+  + IS +  L SL++S
Sbjct: 250 LIISRNQIGDEGAKYICEMEQLTSLNISGN-EIGDEGAKYISDMKQLTSLDIS 301



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 6/234 (2%)

Query: 5   LSGLSNLTSL--SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +S +  LTSL  SF   N I  QG+K  +G+  L  LD+        G   +  + +L S
Sbjct: 73  ISDMKRLTSLDISF---NQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQLTS 129

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L I   N I D   K +S +  L SL +  +++ D G  Y+  +++LT L++    +   
Sbjct: 130 LGIS-KNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLIDVE 188

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            +  +  +  L  LN+    +  +G +  S++  L  LN+  NEI DE   ++  +  L 
Sbjct: 189 GVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQLI 248

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
           SL +    IGDEG   +  +  L  L +S  ++G  G +++S +  L S+++SF
Sbjct: 249 SLIISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAKYISDMKQLTSLDISF 302


>gi|374850803|dbj|BAL53782.1| hypothetical conserved protein, partial [uncultured planctomycete]
          Length = 351

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 146/305 (47%), Gaps = 28/305 (9%)

Query: 69  NCITDSDMKPLSGLTN--LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
           N I D ++  L+ +    + SL +S +++T  G   +  L+ L  L L    V    L  
Sbjct: 72  NLIGDVEIAKLASIPEVCICSLDLSHARLTPQGWRKIAELRALRELYLADSNVDDEDLQY 131

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           L+ LGSL  L+L    +   G +   +I +L+VL L   +I DE +  +  LT LE L+L
Sbjct: 132 LANLGSLETLDLAWTPMKGTGLKHVGQIRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDL 191

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
               + D+G+  ++ L NLK L   ++ +     + L+ L  L ++ LS + ++   +  
Sbjct: 192 GGTLVTDKGMEFVSRLANLKDLRCPES-LTDDATKLLARLVQLRTLCLSSSCVTSQGVES 250

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           L  LS L+SL+L   +I D  L  +T L+ L HL L    ITD+ A  +  F NL+SL +
Sbjct: 251 LKTLSELRSLDLSRTKIDDRALDQITVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFL 310

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
            G  ++D+ ++ +  + +L  LNLS+                           +T  GL+
Sbjct: 311 DGTKISDSVLQEVGKVHTLERLNLSKTA-------------------------VTGEGLQ 345

Query: 367 HLKPL 371
           HL PL
Sbjct: 346 HLTPL 350



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 129/255 (50%), Gaps = 6/255 (2%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           +T QG +  A L  L +L L         L  L  L  LE+L++ W   +  + +K +  
Sbjct: 100 LTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWTP-MKGTGLKHVGQ 158

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           + NL+ L ++ +K+ D  IA +  L KL  L+L G  VT   ++ +S L +L  L   RC
Sbjct: 159 IRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLKDL---RC 215

Query: 142 Q--LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
              L+DD  +  +++  L+ L L  + +T + +  LK L+ L SL+L    I D  L  +
Sbjct: 216 PESLTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRTKIDDRALDQI 275

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
           T L  L+ L LS+T +  +    +    NL+S+ L  T ISD  L+++  + +L+ LNL 
Sbjct: 276 TVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKISDSVLQEVGKVHTLERLNLS 335

Query: 260 ARQITDTGLAALTSL 274
              +T  GL  LT L
Sbjct: 336 KTAVTGEGLQHLTPL 350



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 2/203 (0%)

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SL+L    +  +G   +  L  L+ L L+D+ V    L++L+ L +LE+++L++T +   
Sbjct: 92  SLDLSHARLTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWTPMKGT 151

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L+ +  + +L+ L L   +I D  +A +  LT L  LDL G  +TD G  ++    NL+
Sbjct: 152 GLKHVGQIRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLK 211

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            L  C   LTD   K +  L  L  L LS +C +T + +E +  L+ L SL++S ++I  
Sbjct: 212 DLR-CPESLTDDATKLLARLVQLRTLCLSSSC-VTSQGVESLKTLSELRSLDLSRTKIDD 269

Query: 363 AGLRHLKPLKNLRSLTLESCKVT 385
             L  +  L  L  L L    +T
Sbjct: 270 RALDQITVLSKLEHLLLSETNIT 292



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           +T+QG+++   L  L  LDL R       L  +  L KLE L +   N ITD+    +  
Sbjct: 243 VTSQGVESLKTLSELRSLDLSRTKIDDRALDQITVLSKLEHLLLSETN-ITDAVAPVIGR 301

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
             NLKSL +  +K++DS +  +  +  L  LNL    VT   L  L+ L 
Sbjct: 302 FMNLKSLFLDGTKISDSVLQEVGKVHTLERLNLSKTAVTGEGLQHLTPLA 351



 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SL++    LT  G + I +L +L  L L+ + N+ D+ L+ ++ L  L +L+++ + +  
Sbjct: 92  SLDLSHARLTPQGWRKIAELRALRELYLA-DSNVDDEDLQYLANLGSLETLDLAWTPMKG 150

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            GL+H+  ++NLR L L   K+    I ++
Sbjct: 151 TGLKHVGQIRNLRVLLLTHTKIADEHIAQI 180


>gi|299065269|emb|CBJ36437.1| leucine-rich-repeat type III effector protein (GALA8) [Ralstonia
           solanacearum CMR15]
          Length = 524

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 111/350 (31%), Positives = 162/350 (46%), Gaps = 3/350 (0%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 70
           +TSL  + +  +T+ G +A A    L  LDL        G   L     L +LN+   N 
Sbjct: 135 ITSLVIQ-DAGMTSVGARALAASDTLTSLDLRGNKITDLGAQALATSRTLTTLNLD-TNT 192

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I     + L+    L +L +  +K+ D+G   L     LT L+ EGC +  A + +L+A 
Sbjct: 193 IGAKGAQALAASRTLTTLNLRGNKIEDAGAQALAASTTLTSLSAEGCRIGLAGVQALAAS 252

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            SL  LNL    + D G +  +   +L  L+L  N+I D   + L     L SL +D C 
Sbjct: 253 RSLTTLNLAGNNIDDAGAQALAASRTLTTLDLSANKIGDAGALALAASRTLASLEVDHCE 312

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           IG  G   L    +L  L +S   VG +G + L+    L SI      I     + LA  
Sbjct: 313 IGAAGAQALATSDSLAALNISHNPVGDAGAQALAICRTLTSIKAKDCQIGAAGAQALAAS 372

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
            SL SL+LDA QI D G  AL +   LT L++    I D G   L   + L SL++    
Sbjct: 373 DSLTSLDLDANQIGDDGAQALATSNTLTSLNVRYNTIGDLGVQALAANRLLESLDVSDNK 432

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           +    V+ + +  +LT LN+S N N+ D   +L++    L SLNV  SRI
Sbjct: 433 IGITSVQALAENCTLTSLNVSGN-NIGDAGAQLLAANRSLTSLNVCWSRI 481



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 155/353 (43%), Gaps = 26/353 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+    LTSL  R  N IT  G +A A    L  L+L+  T    G   L     L +LN
Sbjct: 153 LAASDTLTSLDLR-GNKITDLGAQALATSRTLTTLNLDTNTIGAKGAQALAASRTLTTLN 211

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           ++  N I D+  + L+  T L SL     ++  +G+  L   + LT LNL G  +  A  
Sbjct: 212 LR-GNKIEDAGAQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLAGNNIDDAGA 270

Query: 125 DSLSALGSLFYLNL------------------------NRCQLSDDGCEKFSKIGSLKVL 160
            +L+A  +L  L+L                        + C++   G +  +   SL  L
Sbjct: 271 QALAASRTLTTLDLSANKIGDAGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAAL 330

Query: 161 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
           N+  N + D     L     L S+    C IG  G   L    +L  L+L   Q+G  G 
Sbjct: 331 NISHNPVGDAGAQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGA 390

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           + L+    L S+N+ +  I D  ++ LA    L+SL++   +I  T + AL     LT L
Sbjct: 391 QALATSNTLTSLNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALAENCTLTSL 450

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           ++ G  I D+GA  L   ++L SL +C   + DAG   +    SLT L++S N
Sbjct: 451 NVSGNNIGDAGAQLLAANRSLTSLNVCWSRIGDAGALALAANRSLTSLDVSVN 503



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 149/317 (47%), Gaps = 2/317 (0%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L+    LT+L+ R  N I   G +A A    L  L  E C     G+  L     L +
Sbjct: 199 QALAASRTLTTLNLR-GNKIEDAGAQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTT 257

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+   N I D+  + L+    L +L +S +K+ D+G   L   + L  L ++ C + AA
Sbjct: 258 LNLA-GNNIDDAGAQALAASRTLTTLDLSANKIGDAGALALAASRTLASLEVDHCEIGAA 316

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
              +L+   SL  LN++   + D G +  +   +L  +     +I       L    +L 
Sbjct: 317 GAQALATSDSLAALNISHNPVGDAGAQALAICRTLTSIKAKDCQIGAAGAQALAASDSLT 376

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SL+LD+  IGD+G   L     L  L +    +G  G++ L+    LES+++S   I   
Sbjct: 377 SLDLDANQIGDDGAQALATSNTLTSLNVRYNTIGDLGVQALAANRLLESLDVSDNKIGIT 436

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           S++ LA   +L SLN+    I D G   L +   LT L++  +RI D+GA  L   ++L 
Sbjct: 437 SVQALAENCTLTSLNVSGNNIGDAGAQLLAANRSLTSLNVCWSRIGDAGALALAANRSLT 496

Query: 303 SLEICGGGLTDAGVKHI 319
           SL++    + +AG + +
Sbjct: 497 SLDVSVNRIGEAGARAL 513



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 105/250 (42%), Gaps = 28/250 (11%)

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-----LTGLCNLKCLELSDTQVGS 217
           G N  +      + GL  L  L + S  I D G+ +     L     L  L+L   ++  
Sbjct: 112 GCNATSSTSATSVAGLKYLAKLPITSLVIQDAGMTSVGARALAASDTLTSLDLRGNKITD 171

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
            G + L+    L ++NL    I     + LA   +L +LNL   +I D G  AL + T L
Sbjct: 172 LGAQALATSRTLTTLNLDTNTIGAKGAQALAASRTLTTLNLRGNKIEDAGAQALAASTTL 231

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN---- 333
           T L   G RI  +G   L   ++L +L + G  + DAG + +    +LT L+LS N    
Sbjct: 232 TSLSAEGCRIGLAGVQALAASRSLTTLNLAGNNIDDAGAQALAASRTLTTLDLSANKIGD 291

Query: 334 -------------------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
                              C +     + ++    L +LN+S++ +  AG + L   + L
Sbjct: 292 AGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISHNPVGDAGAQALAICRTL 351

Query: 375 RSLTLESCKV 384
            S+  + C++
Sbjct: 352 TSIKAKDCQI 361


>gi|209154948|gb|ACI33706.1| F-box/LRR-repeat protein 14 [Salmo salar]
          Length = 400

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 179/338 (52%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           + G+ N++SL +S C  +TD+G+  A+++ +  L +LNL  C                  
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCK----------------- 128

Query: 136 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 191
                 Q++D    + ++ + +L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 129 ------QITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHV 182

Query: 192 GDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 240
            D G+ +L G+         NL+ L L D Q +    L+H+S GL  L  +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLAKLRVLNLSFCGGIS 242

Query: 241 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-R 296
           D  +  L+ ++SL SLNL +   I+DTG+  L   T  L+ LD+ F  +I D   AY+ +
Sbjct: 243 DAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDMSFCDKIGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  ++
Sbjct: 303 GLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   ++IT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTKITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 152/303 (50%), Gaps = 50/303 (16%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLK-- 104
           ++G+  +ESLN+  C  +TD+ +    +  + +L+ L +S C ++TDS +     YLK  
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNL 145

Query: 105 ---------------------GLQKLTLLNLEGC-PVTAACLDSLSALG--------SLF 134
                                GL +L  LNL  C  V+   +  L+ +         +L 
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLE 205

Query: 135 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 190
           YL L  CQ L+D   +  SK +  L+VLNL F   I+D  ++HL  +T+L SLNL SC  
Sbjct: 206 YLTLQDCQKLTDLSLKHISKGLAKLRVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDN 265

Query: 191 IGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RK 246
           I D G+++L  G   L  L++S   ++G   L +++ GL  L+S++L    ISD  + R 
Sbjct: 266 ISDTGIMHLAMGTLRLSGLDMSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRM 325

Query: 247 LAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRS 303
           +  +  L++LN+    +ITD GL  +   LT LT +DL+G  +IT  G   +     L+ 
Sbjct: 326 VRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKV 385

Query: 304 LEI 306
           L +
Sbjct: 386 LNL 388



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 22/232 (9%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L SL+ R    ++  G+   AG+        +NL  L L+ C ++    L ++ KG
Sbjct: 167 GLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKG 226

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L KL  LN+ +C  I+D+ M  LS +T+L SL + SC  ++D+GI +L  G  +L+ L++
Sbjct: 227 LAKLRVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDM 286

Query: 115 EGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEIT 168
             C        SL+ +    Y    L+L  C +SDDG  +  + +  L+ LN+G    IT
Sbjct: 287 SFCDKIGD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRIT 344

Query: 169 DECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           D+ L  +   LT L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 345 DKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 396



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 32/245 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    R    
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 141

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 275
           L NLE + L   + I++  L  +A GL  LKSLNL + R ++D G+  L  +T       
Sbjct: 142 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201

Query: 276 -GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             L +L L    ++TD    ++ +    LR  +L  CGG ++DAG+ H+  ++SL  LNL
Sbjct: 202 LNLEYLTLQDCQKLTDLSLKHISKGLAKLRVLNLSFCGG-ISDAGMIHLSHMTSLWSLNL 260

Query: 331 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 387
               N++D   + L  G   L  L++S   +I    L ++ + L  L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGIMHLAMGTLRLSGLDMSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 320

Query: 388 DIKRL 392
            I R+
Sbjct: 321 GINRM 325


>gi|29823176|emb|CAD15503.2| probable lrr-gala family type III effector protein (gala 5)
           [Ralstonia solanacearum GMI1000]
          Length = 538

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 172/376 (45%), Gaps = 30/376 (7%)

Query: 6   SGLSNLTSLSFRR----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           +G+++L+ L   R    N  I A+G +  A    L  L++        G   L    +L 
Sbjct: 161 AGIAHLSRLPLVRLNVRNKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLT 220

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +LN+   N I  +  K L+    L+SL +S +++ D G   L                 A
Sbjct: 221 TLNVS-GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL-----------------A 262

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           AC         L  L+ NR  +  DG    +   +L  L +G NEI D  ++ L     L
Sbjct: 263 ACTQ-------LTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARL 315

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            +LN++S G+G +G+  L     L  L L    +G++G   L+  T+L +++L  + I  
Sbjct: 316 TTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGA 375

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
              + LA  + L +L+L    I D G+ AL++   L  L +    + D+ A  L   K L
Sbjct: 376 EGAQALAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRNNLEDASAVSLAAGKTL 435

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
            +L+I G G+ D G K +    +LT L++S N ++ +     ++    LVSL++ N+R+ 
Sbjct: 436 TTLDISGNGIQDQGAKALAANPTLTTLDVSSN-DIKNAGARALAANARLVSLDLRNNRME 494

Query: 362 SAGLRHLKPLKNLRSL 377
            +G R L   + L SL
Sbjct: 495 ESGTRALLANRTLSSL 510



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 186/405 (45%), Gaps = 42/405 (10%)

Query: 17  RRNNAITAQGMKAFAGLINL-VKLDL-ERCTRIHGGLVNL---KGLMKLESLNIKWCNCI 71
           RR++ +T Q ++  +  +   ++ D+ E   +   GL  +        LE L +      
Sbjct: 77  RRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYPALEKLTL--AGTF 134

Query: 72  TDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGL----------------------- 106
           TD D++ L    +LK+L +S  +  +T +GIA+L  L                       
Sbjct: 135 TDDDLRGLP--ASLKALDLSRCRGSITAAGIAHLSRLPLVRLNVRNKRIGAEGARLLANH 192

Query: 107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
             LT LN+    +      +L+A   L  LN++  ++   G +  +   +L+ L++  N 
Sbjct: 193 PTLTSLNVSNGRIGPEGAQALAANTRLTTLNVSGNRIGVAGAKALAANQTLRSLDVSDNR 252

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           I DE    L   T L +L+ +  GIG +G   L     L  L +   ++G +G+  L+  
Sbjct: 253 IGDEGARELAACTQLTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAAN 312

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
             L ++N+  TG+    ++ LA   +L  L LD   I + G  AL + T LT L L  +R
Sbjct: 313 ARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSR 372

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELIS 345
           I   GA  L     L +L++    + DAGV+ +   ++L  L++ +N NL D + + L +
Sbjct: 373 IGAEGAQALAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRN-NLEDASAVSLAA 431

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
           G T L +L++S + I   G + L       + TL +  V++NDIK
Sbjct: 432 GKT-LTTLDISGNGIQDQGAKALAA-----NPTLTTLDVSSNDIK 470



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 149/327 (45%), Gaps = 8/327 (2%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL---MKLESLNIKW 67
           LTSL+   N  I  +G +A A    L  L++    RI  G+   K L     L SL++  
Sbjct: 195 LTSLNVS-NGRIGPEGAQALAANTRLTTLNVS-GNRI--GVAGAKALAANQTLRSLDVS- 249

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N I D   + L+  T L +L  + + +   G   L   + LT L + G  +  A + +L
Sbjct: 250 DNRIGDEGARELAACTQLTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLAL 309

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           +A   L  LN+    +  DG +  +   +L  L L  N+I +     L   T+L +L+L+
Sbjct: 310 AANARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLE 369

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
              IG EG   L     L  L+L    +G +G+R LS    L  +++    + D S   L
Sbjct: 370 HSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRNNLEDASAVSL 429

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           A   +L +L++    I D G  AL +   LT LD+    I ++GA  L     L SL++ 
Sbjct: 430 AAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDVSSNDIKNAGARALAANARLVSLDLR 489

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNC 334
              + ++G + +    +L+ L +S NC
Sbjct: 490 NNRMEESGTRALLANRTLSSLGVSLNC 516


>gi|290972196|ref|XP_002668843.1| predicted protein [Naegleria gruberi]
 gi|284082373|gb|EFC36099.1| predicted protein [Naegleria gruberi]
          Length = 348

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 132/245 (53%), Gaps = 13/245 (5%)

Query: 146 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
           +  +  SK+ +LK LN+  N I +E L+ +  L NL +LN+++  IGDEG+ +++ L NL
Sbjct: 8   NDVQDISKLVNLKTLNISINNIGNEGLIIVCNLINLTNLNIENNDIGDEGVQDISKLVNL 67

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI--SDGSLRKLAGLSSLKSLNLDARQI 263
             L +    + S G + +S LTNL S+N++   +  S+ +L          S N    QI
Sbjct: 68  TNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNL----------SRNNITHQI 117

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
            + G+ ++ +L  LT+L++    I D G   +    NL +L+I    + D G+K I +L 
Sbjct: 118 ENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLI 177

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           +LT LN+ QN ++ D+ ++ IS L  L +L++  ++I   G + +  L NL  L   +  
Sbjct: 178 NLTNLNI-QNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEICKLINLTKLVCWNTD 236

Query: 384 VTAND 388
           +  N+
Sbjct: 237 IATNN 241



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 18/232 (7%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
            +++S L NL +L+   NN I  +G+     LINL  L++E       G+ ++  L+ L 
Sbjct: 10  VQDISKLVNLKTLNISINN-IGNEGLIIVCNLINLTNLNIENNDIGDEGVQDISKLVNLT 68

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +LNIK  N +     + +S LTNL SL ++ + V             L+  NL    +T 
Sbjct: 69  NLNIK-SNALRSKGAQEISKLTNLTSLNVAENNVM------------LSEKNLSRNNITH 115

Query: 122 AC----LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 177
                 + S+  L +L  LN+    + D+G +  SK+ +L  L++G N+I DE +  +  
Sbjct: 116 QIENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFN 175

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
           L NL +LN+ +  IGDEG+ +++ L NL  L++  T++G +G + +  L NL
Sbjct: 176 LINLTNLNIQNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEICKLINL 227



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 108/210 (51%), Gaps = 23/210 (10%)

Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 269
           + + ++G+  ++ +S L NL+++N+S   I +  L  +  L +L +LN++   I D G+ 
Sbjct: 1   MENNKIGND-VQDISKLVNLKTLNISINNIGNEGLIIVCNLINLTNLNIENNDIGDEGVQ 59

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG----------------LTD 313
            ++ L  LT+L++    +   GA  +    NL SL +                    + +
Sbjct: 60  DISKLVNLTNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNLSRNNITHQIEN 119

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 373
            G+K I +L +LT LN+ QN ++ D+ ++ IS L  L +L++ N++I   G++ +  L N
Sbjct: 120 DGIKSIFNLINLTNLNI-QNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLIN 178

Query: 374 LRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
           L +L +++     NDI     +D+  L++ 
Sbjct: 179 LTNLNIQN-----NDIGDEGVQDISKLINL 203


>gi|290976253|ref|XP_002670855.1| predicted protein [Naegleria gruberi]
 gi|284084418|gb|EFC38111.1| predicted protein [Naegleria gruberi]
          Length = 286

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 133/273 (48%), Gaps = 3/273 (1%)

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
           CN + D     +S    L SL +  +++  +G   +  +++LT LN++   V      S+
Sbjct: 11  CNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNNSVGVEGAHSI 70

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           S +  L +L+++   + D+G +   ++  L  LN+ +N+IT   ++  K +  L  LN+ 
Sbjct: 71  SNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFKEMKQLIILNVG 130

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
           S  IG+EG+ N++GL  L  L++     G+ G + +S LTNL  +      I +   + +
Sbjct: 131 SNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCCSNNIREEGAKSI 190

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           + L  +  LNL    +   G   ++ +  LTHL +    I D GA  L   +NL+ L I 
Sbjct: 191 SQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSNEIGDDGAEDLCGLENLKVLSIR 250

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
           G  ++   V+ I +L   T   +    NL D+T
Sbjct: 251 GNNISYDMVQAIHELGKFT---VESEGNLFDET 280



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 109/231 (47%), Gaps = 1/231 (0%)

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
           +  L  L+L  N++ DE    +     L SL +++  IG  G  +++ +  L  L + + 
Sbjct: 1   MSQLTELSLECNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNN 60

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
            VG  G   +S +T L  +++S   I D   + +  L  L +LN+   QIT  G+     
Sbjct: 61  SVGVEGAHSISNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFKE 120

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           +  L  L++   RI + G   +     L  L+I G    + G K I  L++LT L    N
Sbjct: 121 MKQLIILNVGSNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCCSN 180

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
            N+ ++  + IS L  +  LN+  + + + G +H+  +K L  L ++S ++
Sbjct: 181 -NIREEGAKSISQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSNEI 230



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 1/143 (0%)

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           +S L  L+L+  Q+ D     ++    LT L +    I  +GA  +   K L SL I   
Sbjct: 1   MSQLTELSLECNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNN 60

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
            +   G   I +++ LT L++S N N+ D+  ++I  L  L +LN+S ++ITS G+   K
Sbjct: 61  SVGVEGAHSISNMTRLTHLDISLN-NIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFK 119

Query: 370 PLKNLRSLTLESCKVTANDIKRL 392
            +K L  L + S ++    I+ +
Sbjct: 120 EMKQLIILNVGSNRIGNEGIENI 142



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 27/166 (16%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I  +G++  +GL  L +LD+  C   + G                          K +
Sbjct: 132 NRIGNEGIENISGLSQLTELDIGGCDFGNEG-------------------------AKSI 166

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           S LTNL  L    + + + G   +  L+K+T LNL    + A     +S +  L +L ++
Sbjct: 167 SQLTNLTCLYCCSNNIREEGAKSISQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMD 226

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL--VHLKGLTNLES 183
             ++ DDG E    + +LKVL++  N I+ + +  +H  G   +ES
Sbjct: 227 SNEIGDDGAEDLCGLENLKVLSIRGNNISYDMVQAIHELGKFTVES 272


>gi|17546520|ref|NP_519922.1| GALA protein 3 [Ralstonia solanacearum GMI1000]
          Length = 522

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 172/376 (45%), Gaps = 30/376 (7%)

Query: 6   SGLSNLTSLSFRR----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           +G+++L+ L   R    N  I A+G +  A    L  L++        G   L    +L 
Sbjct: 145 AGIAHLSRLPLVRLNVRNKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLT 204

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +LN+   N I  +  K L+    L+SL +S +++ D G   L                 A
Sbjct: 205 TLNVS-GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL-----------------A 246

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           AC         L  L+ NR  +  DG    +   +L  L +G NEI D  ++ L     L
Sbjct: 247 ACTQ-------LTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARL 299

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            +LN++S G+G +G+  L     L  L L    +G++G   L+  T+L +++L  + I  
Sbjct: 300 TTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGA 359

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
              + LA  + L +L+L    I D G+ AL++   L  L +    + D+ A  L   K L
Sbjct: 360 EGAQALAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRNNLEDASAVSLAAGKTL 419

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
            +L+I G G+ D G K +    +LT L++S N ++ +     ++    LVSL++ N+R+ 
Sbjct: 420 TTLDISGNGIQDQGAKALAANPTLTTLDVSSN-DIKNAGARALAANARLVSLDLRNNRME 478

Query: 362 SAGLRHLKPLKNLRSL 377
            +G R L   + L SL
Sbjct: 479 ESGTRALLANRTLSSL 494



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 186/405 (45%), Gaps = 42/405 (10%)

Query: 17  RRNNAITAQGMKAFAGLINL-VKLDL-ERCTRIHGGLVNL---KGLMKLESLNIKWCNCI 71
           RR++ +T Q ++  +  +   ++ D+ E   +   GL  +        LE L +      
Sbjct: 61  RRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYPALEKLTL--AGTF 118

Query: 72  TDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGL----------------------- 106
           TD D++ L    +LK+L +S  +  +T +GIA+L  L                       
Sbjct: 119 TDDDLRGLPA--SLKALDLSRCRGSITAAGIAHLSRLPLVRLNVRNKRIGAEGARLLANH 176

Query: 107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
             LT LN+    +      +L+A   L  LN++  ++   G +  +   +L+ L++  N 
Sbjct: 177 PTLTSLNVSNGRIGPEGAQALAANTRLTTLNVSGNRIGVAGAKALAANQTLRSLDVSDNR 236

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           I DE    L   T L +L+ +  GIG +G   L     L  L +   ++G +G+  L+  
Sbjct: 237 IGDEGARELAACTQLTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAAN 296

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
             L ++N+  TG+    ++ LA   +L  L LD   I + G  AL + T LT L L  +R
Sbjct: 297 ARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSR 356

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELIS 345
           I   GA  L     L +L++    + DAGV+ +   ++L  L++ +N NL D + + L +
Sbjct: 357 IGAEGAQALAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRN-NLEDASAVSLAA 415

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
           G T L +L++S + I   G + L       + TL +  V++NDIK
Sbjct: 416 GKT-LTTLDISGNGIQDQGAKALAA-----NPTLTTLDVSSNDIK 454



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 149/327 (45%), Gaps = 8/327 (2%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL---MKLESLNIKW 67
           LTSL+   N  I  +G +A A    L  L++    RI  G+   K L     L SL++  
Sbjct: 179 LTSLNVS-NGRIGPEGAQALAANTRLTTLNVS-GNRI--GVAGAKALAANQTLRSLDVS- 233

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N I D   + L+  T L +L  + + +   G   L   + LT L + G  +  A + +L
Sbjct: 234 DNRIGDEGARELAACTQLTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLAL 293

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           +A   L  LN+    +  DG +  +   +L  L L  N+I +     L   T+L +L+L+
Sbjct: 294 AANARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLE 353

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
              IG EG   L     L  L+L    +G +G+R LS    L  +++    + D S   L
Sbjct: 354 HSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRNNLEDASAVSL 413

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           A   +L +L++    I D G  AL +   LT LD+    I ++GA  L     L SL++ 
Sbjct: 414 AAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDVSSNDIKNAGARALAANARLVSLDLR 473

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNC 334
              + ++G + +    +L+ L +S NC
Sbjct: 474 NNRMEESGTRALLANRTLSSLGVSLNC 500


>gi|116621127|ref|YP_823283.1| hypothetical protein Acid_2008 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224289|gb|ABJ82998.1| hypothetical protein Acid_2008 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 248

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 122/250 (48%), Gaps = 17/250 (6%)

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           Q+ D    K      L+ L +    IT++ L  +  +T L  + L    + D  LV+L  
Sbjct: 13  QVDDALWRKLESRRDLEELVIWGGAITNDRLEPVSRMTWLTGVGLGEVPVDDGVLVHLQP 72

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNL 258
           L  L+CL L+ T V     R L   T L  + L     TG  D   R LA   +L+ + +
Sbjct: 73  LRELECLNLAYTGVTGDFTRLLG--TPLRDVRLEGCRRTG--DACARSLARFPTLRQVEM 128

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
               +TD GLAA+ +L     +   G RITD G   +  F NLR L+IC   +TD GV+ 
Sbjct: 129 HMTGLTDDGLAAMAALP--LEVLWLGPRITDRGMETIGGFANLRHLDICTHLITDEGVRA 186

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           +  L  L +L L+++  ++D ++E++S  TGL  LNV+ + IT+ GL  LK       L 
Sbjct: 187 LAGLQQLQVLWLTRS-RVSDASIEVLSQFTGLRELNVNYTEITAQGLARLK-------LA 238

Query: 379 LESCKVTAND 388
           L  C++   D
Sbjct: 239 LPECRLVEPD 248



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 111/214 (51%), Gaps = 8/214 (3%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           LE L I W   IT+  ++P+S +T L  + +    V D  + +L+ L++L  LNL    V
Sbjct: 28  LEELVI-WGGAITNDRLEPVSRMTWLTGVGLGEVPVDDGVLVHLQPLRELECLNLAYTGV 86

Query: 120 TAACLDSLSALGS-LFYLNLNRCQLSDDGCEK-FSKIGSLKVLNLGFNEITDECLVHLKG 177
           T    D    LG+ L  + L  C+ + D C +  ++  +L+ + +    +TD+ L  +  
Sbjct: 87  TG---DFTRLLGTPLRDVRLEGCRRTGDACARSLARFPTLRQVEMHMTGLTDDGLAAMAA 143

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           L  LE L L    I D G+  + G  NL+ L++    +   G+R L+GL  L+ + L+ +
Sbjct: 144 LP-LEVLWLGP-RITDRGMETIGGFANLRHLDICTHLITDEGVRALAGLQQLQVLWLTRS 201

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
            +SD S+  L+  + L+ LN++  +IT  GLA L
Sbjct: 202 RVSDASIEVLSQFTGLRELNVNYTEITAQGLARL 235



 Score = 41.6 bits (96), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           IT +GM+   G  NL  LD+  CT +    G+  L GL +L+ L +   + ++D+ ++ L
Sbjct: 155 ITDRGMETIGGFANLRHLDI--CTHLITDEGVRALAGLQQLQVLWLT-RSRVSDASIEVL 211

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLK 104
           S  T L+ L ++ +++T  G+A LK
Sbjct: 212 SQFTGLRELNVNYTEITAQGLARLK 236


>gi|290999054|ref|XP_002682095.1| predicted protein [Naegleria gruberi]
 gi|284095721|gb|EFC49351.1| predicted protein [Naegleria gruberi]
          Length = 357

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 142/286 (49%), Gaps = 24/286 (8%)

Query: 71  ITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
            T+ D +K +  L +L  L +  + +   G  Y+  L+KL  L++    + A     +S 
Sbjct: 47  FTNEDGLKSIGTLKHLIHLCVDFNGIGLEGANYISQLEKLESLSIRYNYIGAEGAKVISE 106

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD-- 187
           + +L +LN++  ++  +G +  S++  L  L++G N++ DE ++ L  L  L +L++D  
Sbjct: 107 MKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDNKVGDEEVILLSELDQLTALSIDRI 166

Query: 188 --------------------SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 227
                               +C I DE    L+ +  L  L++    + + G++ LSGL+
Sbjct: 167 NPDGINAISKMNKLVSLSINNCTILDE-CEELSKMKQLTLLDIKSNGISAKGVKQLSGLS 225

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
            L  +N+S     D   + ++ +  L  L ++  QI+D G+ +L  L  LT LD+    I
Sbjct: 226 QLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQISDDGMKSLGDLNELTILDISNNYI 285

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           TD G+ YL   + L +LE+    L+  GVKH+ +++ LT L++  N
Sbjct: 286 TDEGSLYLTKLEKLTALEVNNNELSYQGVKHMINMNQLTALSIRHN 331



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 151/326 (46%), Gaps = 13/326 (3%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESL 63
           + NLT L+   ++     G+K+   L +L+ L    C   +G    G   +  L KLESL
Sbjct: 35  MKNLTHLTLG-SHFTNEDGLKSIGTLKHLIHL----CVDFNGIGLEGANYISQLEKLESL 89

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           +I++ N I     K +S +  L  L +S +++   G   +  +++LT L++    V    
Sbjct: 90  SIRY-NYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDNKVGDEE 148

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           +  LS L  L  L+++R  ++ DG    SK+  L  L++    I DEC   L  +  L  
Sbjct: 149 VILLSELDQLTALSIDR--INPDGINAISKMNKLVSLSINNCTILDEC-EELSKMKQLTL 205

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           L++ S GI  +G+  L+GL  L  L +S    G  G + +S +  L  + ++   ISD  
Sbjct: 206 LDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQISDDG 265

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           ++ L  L+ L  L++    ITD G   LT L  LT L++    ++  G  ++ N   L +
Sbjct: 266 MKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTALEVNNNELSYQGVKHMINMNQLTA 325

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLN 329
           L I     T    +       L LLN
Sbjct: 326 LSIRHNQFTFVQNEVFSQFKQLKLLN 351



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 133/295 (45%), Gaps = 26/295 (8%)

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
           A  +     + +L +L L     ++DG +    +  L  L + FN I  E   ++  L  
Sbjct: 26  AKVIQGFVLMKNLTHLTLGSHFTNEDGLKSIGTLKHLIHLCVDFNGIGLEGANYISQLEK 85

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           LESL++    IG EG   ++ +  L  L +S  ++G  G + +S +  L  +++    + 
Sbjct: 86  LESLSIRYNYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDNKVG 145

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           D  +  L+ L  L +L++D  +I   G+ A++ +  L  L +    I D     L   K 
Sbjct: 146 DEEVILLSELDQLTALSID--RINPDGINAISKMNKLVSLSINNCTILDE-CEELSKMKQ 202

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN-----------------------CNLT 337
           L  L+I   G++  GVK +  LS LT LN+S N                       C ++
Sbjct: 203 LTLLDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQIS 262

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           D  ++ +  L  L  L++SN+ IT  G  +L  L+ L +L + + +++   +K +
Sbjct: 263 DDGMKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTALEVNNNELSYQGVKHM 317



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 127/273 (46%), Gaps = 32/273 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESL 63
           +S L  L SLS R N  I A+G K  + +  L  L++    RI G G   +  + +L  L
Sbjct: 80  ISQLEKLESLSIRYN-YIGAEGAKVISEMKTLTWLNV-SSNRIGGEGAKAISQMKQLTYL 137

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI----------------------- 100
           +I   N + D ++  LS L  L +L  S  ++   GI                       
Sbjct: 138 DI-GDNKVGDEEVILLSELDQLTAL--SIDRINPDGINAISKMNKLVSLSINNCTILDEC 194

Query: 101 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160
             L  +++LTLL+++   ++A  +  LS L  L +LN++     DDG +  S+I  L  L
Sbjct: 195 EELSKMKQLTLLDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTEL 254

Query: 161 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
            +   +I+D+ +  L  L  L  L++ +  I DEG + LT L  L  LE+++ ++   G+
Sbjct: 255 FVNDCQISDDGMKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTALEVNNNELSYQGV 314

Query: 221 RHLSGLTNLESINL---SFTGISDGSLRKLAGL 250
           +H+  +  L ++++    FT + +    +   L
Sbjct: 315 KHMINMNQLTALSIRHNQFTFVQNEVFSQFKQL 347



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 117/260 (45%), Gaps = 26/260 (10%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
            +K L   +N +  + +     + NL  L L S    ++GL ++  L +L  L +    +
Sbjct: 13  QIKFLTFNYNTLGAKVIQGFVLMKNLTHLTLGSHFTNEDGLKSIGTLKHLIHLCVDFNGI 72

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
           G  G  ++S L  LES+++ +  I     + ++ + +L  LN+ + +I   G  A++ + 
Sbjct: 73  GLEGANYISQLEKLESLSIRYNYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMK 132

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            LT+LD+   ++ D     L     L +L I    +   G+  I  ++ L  L+++ NC 
Sbjct: 133 QLTYLDIGDNKVGDEEVILLSELDQLTALSI--DRINPDGINAISKMNKLVSLSIN-NCT 189

Query: 336 LTDKTLEL-----------------------ISGLTGLVSLNVSNSRITSAGLRHLKPLK 372
           + D+  EL                       +SGL+ L  LN+S++     G + +  +K
Sbjct: 190 ILDECEELSKMKQLTLLDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIK 249

Query: 373 NLRSLTLESCKVTANDIKRL 392
            L  L +  C+++ + +K L
Sbjct: 250 QLTELFVNDCQISDDGMKSL 269


>gi|290974952|ref|XP_002670208.1| leucine-rich repeat protein [Naegleria gruberi]
 gi|284083764|gb|EFC37464.1| leucine-rich repeat protein [Naegleria gruberi]
          Length = 252

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 121/237 (51%), Gaps = 1/237 (0%)

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           Q+  +G +  S++  L  LN+  NEI D+    + G+  L SLN+ S   G+EG  +++ 
Sbjct: 13  QVGVEGAKSISEMKQLTSLNISNNEIGDKGANFISGMKQLTSLNIGSNKFGNEGAKSISE 72

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           +  L  L +   Q+G  G++ +S +  L S+++ + GI       ++ +  L SL++   
Sbjct: 73  MKQLTVLYIGLNQIGDEGVKFISEMKRLTSVDICYNGIGVKGANSISEMKQLTSLDICLN 132

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           QI D G  +++ L  LT L +   +I D GA  +   K L SL I    +   G + I +
Sbjct: 133 QIGDEGAKSISELEQLTLLYISANQIGDEGAKSISELKQLTSLAISANQIGVKGAESISE 192

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           L  LT L  S N  +  + ++ IS +  L SL++ N+RI + G+  L  L +L+ L 
Sbjct: 193 LKQLTSLAASAN-QIGAEGVKFISEMKQLTSLDIGNNRIGAEGVTLLTSLTSLKFLV 248



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 24/262 (9%)

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
           +CN +     K +S +  L SL IS +++ D G  ++ G+++LT                
Sbjct: 10  YCNQVGVEGAKSISEMKQLTSLNISNNEIGDKGANFISGMKQLT---------------- 53

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
                    LN+   +  ++G +  S++  L VL +G N+I DE +  +  +  L S+++
Sbjct: 54  --------SLNIGSNKFGNEGAKSISEMKQLTVLYIGLNQIGDEGVKFISEMKRLTSVDI 105

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
              GIG +G  +++ +  L  L++   Q+G  G + +S L  L  + +S   I D   + 
Sbjct: 106 CYNGIGVKGANSISEMKQLTSLDICLNQIGDEGAKSISELEQLTLLYISANQIGDEGAKS 165

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           ++ L  L SL + A QI   G  +++ L  LT L     +I   G  ++   K L SL+I
Sbjct: 166 ISELKQLTSLAISANQIGVKGAESISELKQLTSLAASANQIGAEGVKFISEMKQLTSLDI 225

Query: 307 CGGGLTDAGVKHIKDLSSLTLL 328
               +   GV  +  L+SL  L
Sbjct: 226 GNNRIGAEGVTLLTSLTSLKFL 247



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 2/204 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +SG+  LTSL+   +N    +G K+ + +  L  L +        G+  +  + +L S++
Sbjct: 46  ISGMKQLTSLNIG-SNKFGNEGAKSISEMKQLTVLYIGLNQIGDEGVKFISEMKRLTSVD 104

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I + N I       +S +  L SL I  +++ D G   +  L++LTLL +    +     
Sbjct: 105 ICY-NGIGVKGANSISEMKQLTSLDICLNQIGDEGAKSISELEQLTLLYISANQIGDEGA 163

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            S+S L  L  L ++  Q+   G E  S++  L  L    N+I  E +  +  +  L SL
Sbjct: 164 KSISELKQLTSLAISANQIGVKGAESISELKQLTSLAASANQIGAEGVKFISEMKQLTSL 223

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCL 208
           ++ +  IG EG+  LT L +LK L
Sbjct: 224 DIGNNRIGAEGVTLLTSLTSLKFL 247


>gi|62632752|ref|NP_001015043.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
 gi|190338219|gb|AAI63001.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
 gi|190338703|gb|AAI63002.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
          Length = 400

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 181/338 (53%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           + G+ N++SL +S C  +TD+G+  A+++ +  L +LNL  C                  
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCK----------------- 128

Query: 136 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 191
                 Q++D    + ++ + +L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 129 ------QITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHV 182

Query: 192 GDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 240
            D G+ +L G+         +L+ L L D Q +    L+H+S GLT L+ +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGIS 242

Query: 241 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-R 296
           D  +  L+ ++SL SLNL +   I+DTG+  L   T  L+ LD+ F  +I D   AY+ +
Sbjct: 243 DAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  ++
Sbjct: 303 GLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   ++IT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTKITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 50/303 (16%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLK-- 104
           ++G+  +ESLN+  C  +TD+ +    +  + +L+ L +S C ++TDS +     YLK  
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNL 145

Query: 105 ---------------------GLQKLTLLNLEGC-PVTAACLDSLSALG--------SLF 134
                                GL +L  LNL  C  V+   +  L+ +         SL 
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLE 205

Query: 135 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 190
           YL L  CQ L+D   +  SK +  LKVLNL F   I+D  ++HL  +T+L SLNL SC  
Sbjct: 206 YLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDN 265

Query: 191 IGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RK 246
           I D G+++L  G   L  L++S   ++G   L +++ GL  L+S++L    ISD  + R 
Sbjct: 266 ISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRM 325

Query: 247 LAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRS 303
           +  +  L++LN+    +ITD GL  +   LT LT +DL+G  +IT  G   +     L+ 
Sbjct: 326 VRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKV 385

Query: 304 LEI 306
           L +
Sbjct: 386 LNL 388



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 118/232 (50%), Gaps = 22/232 (9%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L SL+ R    ++  G+   AG+        ++L  L L+ C ++    L ++ KG
Sbjct: 167 GLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKG 226

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L KL+ LN+ +C  I+D+ M  LS +T+L SL + SC  ++D+GI +L  G  +L+ L++
Sbjct: 227 LTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDV 286

Query: 115 EGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEIT 168
             C        SL+ +    Y    L+L  C +SDDG  +  + +  L+ LN+G    IT
Sbjct: 287 SFCDKIGD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRIT 344

Query: 169 DECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           D+ L  +   LT L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 345 DKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 396



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 32/245 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    R    
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 141

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 275
           L NLE + L   + I++  L  +A GL  LKSLNL + R ++D G+  L  +T       
Sbjct: 142 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201

Query: 276 -GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             L +L L    ++TD    ++ +    L+  +L  CGG ++DAG+ H+  ++SL  LNL
Sbjct: 202 LSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGG-ISDAGMIHLSHMTSLWSLNL 260

Query: 331 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 387
               N++D   + L  G   L  L+VS   +I    L ++ + L  L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 320

Query: 388 DIKRL 392
            I R+
Sbjct: 321 GINRM 325


>gi|290994522|ref|XP_002679881.1| leucine rich repeat protein [Naegleria gruberi]
 gi|284093499|gb|EFC47137.1| leucine rich repeat protein [Naegleria gruberi]
          Length = 340

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 25/254 (9%)

Query: 127 LSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           +  +  L +L++  C + DD G +  S +  L  LN+  N I  E   +L  L  L +L 
Sbjct: 95  IGKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQLTNLK 154

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           ++S  IG EG  +++ +  L  L +S+  +G  G + +S ++                  
Sbjct: 155 INSNEIGPEGAKSISDMKQLTTLNISNNMIGMEGAKSISEIS------------------ 196

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
                S L  L++ + QI++ GL  ++ ++ LT LD  G  I D GA YL   KNLR L+
Sbjct: 197 -----SQLTILDISSNQISNEGLKFISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLD 251

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
           I    + D G   I  L  LT LN+S N  + ++    +S +  L  LN+SN+ I  AG 
Sbjct: 252 ISKNFVYDNGADLISKLPQLTNLNISFN-EIGNQGAIYLSKMEKLTILNISNNLIGPAGA 310

Query: 366 RHLKPLKNLRSLTL 379
           ++L  ++ L  L +
Sbjct: 311 KYLGEMQQLTKLNI 324



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 133/262 (50%), Gaps = 3/262 (1%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCP-VTAACLDSLSALGS 132
           D+ P   L+N+   ++   +        + G +++LT L++  C  +       +SAL  
Sbjct: 66  DLLPSRFLSNIVQFRVCVERKPGEMFYQIIGKMKQLTFLDIRNCSMIDDKGAKYVSALNQ 125

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L +LN+++  +  +G +  SK+  L  L +  NEI  E    +  +  L +LN+ +  IG
Sbjct: 126 LTFLNISQNNIGPEGAKYLSKLDQLTNLKINSNEIGPEGAKSISDMKQLTTLNISNNMIG 185

Query: 193 DEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            EG  +++ +   L  L++S  Q+ + GL+ +S ++ L S++ +   I D   + L+ L 
Sbjct: 186 MEGAKSISEISSQLTILDISSNQISNEGLKFISEMSQLTSLDTNGNNIGDKGAKYLSELK 245

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           +L+ L++    + D G   ++ L  LT+L++    I + GA YL   + L  L I    +
Sbjct: 246 NLRVLDISKNFVYDNGADLISKLPQLTNLNISFNEIGNQGAIYLSKMEKLTILNISNNLI 305

Query: 312 TDAGVKHIKDLSSLTLLNLSQN 333
             AG K++ ++  LT LN+++N
Sbjct: 306 GPAGAKYLGEMQQLTKLNINRN 327



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 26/242 (10%)

Query: 56  GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           G MK L  L+I+ C+ I D   K +S L  L  L IS + +   G  YL  L +LT L +
Sbjct: 96  GKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQLTNLKI 155

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLV 173
               +      S+S +  L  LN++   +  +G +  S+I S L +L++  N+I++E L 
Sbjct: 156 NSNEIGPEGAKSISDMKQLTTLNISNNMIGMEGAKSISEISSQLTILDISSNQISNEGLK 215

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-------------------- 213
            +  ++ L SL+ +   IGD+G   L+ L NL+ L++S                      
Sbjct: 216 FISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLDISKNFVYDNGADLISKLPQLTNLN 275

Query: 214 ----QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 269
               ++G+ G  +LS +  L  +N+S   I     + L  +  L  LN++   ++ + LA
Sbjct: 276 ISFNEIGNQGAIYLSKMEKLTILNISNNLIGPAGAKYLGEMQQLTKLNINRNYLSVSELA 335

Query: 270 AL 271
            L
Sbjct: 336 LL 337



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 109/229 (47%), Gaps = 2/229 (0%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           +  LT L  R  + I  +G K  + L  L  L++ +      G   L  L +L +L I  
Sbjct: 98  MKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQLTNLKIN- 156

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-KLTLLNLEGCPVTAACLDS 126
            N I     K +S +  L +L IS + +   G   +  +  +LT+L++    ++   L  
Sbjct: 157 SNEIGPEGAKSISDMKQLTTLNISNNMIGMEGAKSISEISSQLTILDISSNQISNEGLKF 216

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           +S +  L  L+ N   + D G +  S++ +L+VL++  N + D     +  L  L +LN+
Sbjct: 217 ISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLDISKNFVYDNGADLISKLPQLTNLNI 276

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
               IG++G + L+ +  L  L +S+  +G +G ++L  +  L  +N++
Sbjct: 277 SFNEIGNQGAIYLSKMEKLTILNISNNLIGPAGAKYLGEMQQLTKLNIN 325



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 3/192 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S L+ LT L+  +NN I  +G K  + L  L  L +        G  ++  + +L +LN
Sbjct: 120 VSALNQLTFLNISQNN-IGPEGAKYLSKLDQLTNLKINSNEIGPEGAKSISDMKQLTTLN 178

Query: 65  IKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           I   N I     K +S ++  L  L IS +++++ G+ ++  + +LT L+  G  +    
Sbjct: 179 IS-NNMIGMEGAKSISEISSQLTILDISSNQISNEGLKFISEMSQLTSLDTNGNNIGDKG 237

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
              LS L +L  L++++  + D+G +  SK+  L  LN+ FNEI ++  ++L  +  L  
Sbjct: 238 AKYLSELKNLRVLDISKNFVYDNGADLISKLPQLTNLNISFNEIGNQGAIYLSKMEKLTI 297

Query: 184 LNLDSCGIGDEG 195
           LN+ +  IG  G
Sbjct: 298 LNISNNLIGPAG 309


>gi|84043372|ref|XP_951476.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|33348176|gb|AAQ15503.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|62359981|gb|AAX80405.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
          Length = 1393

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 181/406 (44%), Gaps = 58/406 (14%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNL 85
           ++A A ++ L KL L  CT I  G+  L  L +L+ L++   N  TD++ ++ L     +
Sbjct: 477 VEALANILTLEKLSLHGCTDIDAGIGCLGNLPQLKVLDLSGTN--TDNESLRSLCLSQTM 534

Query: 86  KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
            SL +S C K+T+  ++++  L+ L  LNL  C    A  ++L  L  L    L+   ++
Sbjct: 535 VSLNLSHCWKMTN--VSHISSLEALNELNLSNCIRINAGWEALEKLQQLHVAILSNTHIT 592

Query: 145 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLT 200
           D G   FSK  +L  L+L F N++ D  +  L  +T LE LNLDSC    +GL     L 
Sbjct: 593 DRGISYFSKCKNLVTLDLSFCNKLLD--VTTLSNITTLEELNLDSCSNIRKGLSVLGELP 650

Query: 201 GLC--NLKCLELSDTQVGSSG------------------LRHLSGLTNLESINLSFTGIS 240
            LC  N+K ++L D+ +GS G                  +  LS L  LE +NL +    
Sbjct: 651 RLCVLNIKGVQLEDSVIGSLGNGKSLVRLSLENCKGFGDVTPLSNLVTLEELNLHYCDKV 710

Query: 241 DGSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTG 276
              +  L  L  L+ L+L   Q+ D                        T ++A+ SLT 
Sbjct: 711 TSGMGTLGRLPQLRVLDLGRTQVDDNSLENICTSSIPLVSLNFSHCKKITSISAIASLTA 770

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           L  L++       SG         LR   +    + D  ++H+ +  SL  LNL+   ++
Sbjct: 771 LEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDEKIRHVSECKSLNTLNLAFCKDI 830

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
           TD T   +S +T L  LN+        G+  L  L   R L+++ C
Sbjct: 831 TDVT--ALSKITMLEELNLDCCPNIRKGIETLGTLPKARILSMKEC 874



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 182/396 (45%), Gaps = 19/396 (4%)

Query: 2    TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
            T+N+S   +L SL+      +T   +   + L  L +L++  C  I  G  +L G + L 
Sbjct: 954  TKNISESKSLRSLNLSHCKWVT--DISVLSSLSTLEELNVNCCNAIRKGWESL-GKLPLL 1010

Query: 62   SLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             + I     IT  D+  LS    L  L+   C K++D  + Y   +Q L  L ++ C   
Sbjct: 1011 RVAILSDTNITAKDIACLSSCKKLVKLKFFRCKKLSDVTVVY--KIQSLEELIVKNCSGG 1068

Query: 121  AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 179
               L++L  L  L +L+L     SD   E      SL  LN+    E+TD     L  +T
Sbjct: 1069 LKGLNALGTLPRLRFLHLRNVSGSDISVESIGTSKSLVRLNIETREELTDT--TPLSNIT 1126

Query: 180  NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG- 238
            +LE L+L  CG   EG+  L  L  L+ L L  +++  S L ++    ++ S+NL+ +  
Sbjct: 1127 SLEELSLRKCGNNLEGVGTLGKLPRLRSLYLGLSRINDSTLYYICLSRSITSLNLASSWK 1186

Query: 239  ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRN 297
            ++D S   ++ L++L+ LNL       +G  AL+ L  L  L+L   R+T   G  Y+R 
Sbjct: 1187 LTDIS--HISKLTALEELNLRGCYPITSGWEALSELPRLRVLNLESTRVTTRYGGYYIRR 1244

Query: 298  FKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
             K+L +L +    +TDA  + +IK L  L +      C         +  L  L  LN+ 
Sbjct: 1245 CKSLVTLSLESCDMTDASCLANIKTLEELHI----GRCKELRWGFSPLFTLPRLRILNLI 1300

Query: 357  NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
             S IT   LR ++P   +  L L  C+   NDI  L
Sbjct: 1301 CSLITDEDLREIQPPHTIEELNLSYCE-ELNDITPL 1335



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 186/465 (40%), Gaps = 90/465 (19%)

Query: 19   NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
            N  IT +G+  F+   NLV LDL  C ++   +  L  +  LE LN+  C+ I    +  
Sbjct: 588  NTHITDRGISYFSKCKNLVTLDLSFCNKLLD-VTTLSNITTLEELNLDSCSNIRKG-LSV 645

Query: 79   LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
            L  L  L  L I   ++ DS I  L   + L  L+LE C      +  LS L +L  LNL
Sbjct: 646  LGELPRLCVLNIKGVQLEDSVIGSLGNGKSLVRLSLENCKGFGD-VTPLSNLVTLEELNL 704

Query: 139  NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL----------------------- 175
            + C     G     ++  L+VL+LG  ++ D  L ++                       
Sbjct: 705  HYCDKVTSGMGTLGRLPQLRVLDLGRTQVDDNSLENICTSSIPLVSLNFSHCKKITSISA 764

Query: 176  -KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
               LT LE LN+D+C     G      L  L+   LS+T++    +RH+S   +L ++NL
Sbjct: 765  IASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDEKIRHVSECKSLNTLNL 824

Query: 235  SF-TGISDGSLRKLAGLSSLKSLNLD--------------------------------AR 261
            +F   I+D  +  L+ ++ L+ LNLD                                A+
Sbjct: 825  AFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGTLPKARILSMKECYMGDGYAQ 882

Query: 262  QITDTG------------------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
            Q +  G                  + AL+ +  L  L L  AR        + +F  L  
Sbjct: 883  QCSILGNSKSLVKLNLERSRGRISVKALSDIATLEELVLDHAR----EVCCIPSFSCLPR 938

Query: 304  LEICGGGLTDA---GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
            L +     TD      K+I +  SL  LNLS    +TD  + ++S L+ L  LNV+    
Sbjct: 939  LRVLNLKYTDINGDATKNISESKSLRSLNLSHCKWVTD--ISVLSSLSTLEELNVNCCNA 996

Query: 361  TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVSFR 404
               G   L  L  LR   L    +TA DI  L S + L  L  FR
Sbjct: 997  IRKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLKFFR 1041



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 166/375 (44%), Gaps = 61/375 (16%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           LE LNI +C  I  +D+ PLS  T ++ L ++ C ++T  GI  +  L KL + +++   
Sbjct: 321 LERLNISYC--IQLTDINPLSNATAIEELNLNGCRRIT-RGIDVVWALPKLRVFHMKDVH 377

Query: 119 VTAACLDSLSALGSLFYLNLNRCQ-------------------------LSDDGCE---- 149
           ++   LDS+   GSL  ++L+ C                          +S  GC     
Sbjct: 378 LSEPSLDSVGTGGSLVKVSLDNCAGFGDMSLLSSIVTLEELNIQKCADIISGVGCLGTLP 437

Query: 150 ---------------KFSKIGSLK-VLNLGFNEITDECLVHLKGLTN---LESLNLDSCG 190
                           F+ IG+ K +L L    IT   L +++ L N   LE L+L  C 
Sbjct: 438 YLRVLNIKEVHISSLDFTGIGASKSLLQLNMESITG--LSNVEALANILTLEKLSLHGCT 495

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
             D G+  L  L  LK L+LS T   +  LR L     + S+NLS       ++  ++ L
Sbjct: 496 DIDAGIGCLGNLPQLKVLDLSGTNTDNESLRSLCLSQTMVSLNLSHCW-KMTNVSHISSL 554

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CG 308
            +L  LNL      + G  AL  L  L    L    ITD G +Y    KNL +L++  C 
Sbjct: 555 EALNELNLSNCIRINAGWEALEKLQQLHVAILSNTHITDRGISYFSKCKNLVTLDLSFCN 614

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
             L    V  + ++++L  LNL  +C+   K L ++  L  L  LN+   ++  + +  L
Sbjct: 615 KLL---DVTTLSNITTLEELNL-DSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIGSL 670

Query: 369 KPLKNLRSLTLESCK 383
              K+L  L+LE+CK
Sbjct: 671 GNGKSLVRLSLENCK 685



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 177/389 (45%), Gaps = 35/389 (8%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           ++  + L NL+ L+L         +  +    KL  L++  CN ITD+   P+S L  L+
Sbjct: 217 IRGISRLTNLMCLELNSTDIDDTCIGEISACAKLSKLSVSECNNITDA--TPISQLAALE 274

Query: 87  SLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLS 144
            L + SC  +T  GI  L  L +L +L+L G PV   CL  L   GSL  LN++ C QL+
Sbjct: 275 ELNLNSCYHIT-KGIGTLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLT 333

Query: 145 D---------------DGCEKFSK-------IGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           D               +GC + ++       +  L+V ++    +++  L  +    +L 
Sbjct: 334 DINPLSNATAIEELNLNGCRRITRGIDVVWALPKLRVFHMKDVHLSEPSLDSVGTGGSLV 393

Query: 183 SLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            ++LD+C G GD  L  L+ +  L+ L +       SG+  L  L  L  +N+    IS 
Sbjct: 394 KVSLDNCAGFGDMSL--LSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEVHISS 451

Query: 242 GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
                +    SL  LN+++  IT  + + AL ++  L  L L G    D+G   L N   
Sbjct: 452 LDFTGIGASKSLLQLNMES--ITGLSNVEALANILTLEKLSLHGCTDIDAGIGCLGNLPQ 509

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L+ L++ G    +  ++ +    ++  LNLS    +T+  +  IS L  L  LN+SN   
Sbjct: 510 LKVLDLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTN--VSHISSLEALNELNLSNCIR 567

Query: 361 TSAGLRHLKPLKNLRSLTLESCKVTANDI 389
            +AG   L+ L+ L    L +  +T   I
Sbjct: 568 INAGWEALEKLQQLHVAILSNTHITDRGI 596



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 171/409 (41%), Gaps = 44/409 (10%)

Query: 11   LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 70
            L SL+F     IT+  + A A L  L +L+++ C  +  G      L +L    +     
Sbjct: 748  LVSLNFSHCKKITS--ISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTR- 804

Query: 71   ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
            I D  ++ +S   +L +L ++ C  +TD  +  L  +  L  LNL+ CP     +++L  
Sbjct: 805  INDEKIRHVSECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGT 862

Query: 130  LGSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNE-----------------ITD 169
            L     L++  C + D   ++ S +G   SL  LNL  +                  + D
Sbjct: 863  LPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALSDIATLEELVLD 922

Query: 170  E-----CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
                  C+     L  L  LNL    I  +   N++   +L+ L LS  +   + +  LS
Sbjct: 923  HAREVCCIPSFSCLPRLRVLNLKYTDINGDATKNISESKSLRSLNLSHCK-WVTDISVLS 981

Query: 225  GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
             L+ LE +N++           L  L  L+   L    IT   +A L+S   L  L  F 
Sbjct: 982  SLSTLEELNVNCCNAIRKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLKFFR 1041

Query: 285  A-RITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
              +++D    Y    ++L  L +  C GGL   G+  +  L  L  L+L +N + +D ++
Sbjct: 1042 CKKLSDVTVVY--KIQSLEELIVKNCSGGL--KGLNALGTLPRLRFLHL-RNVSGSDISV 1096

Query: 342  ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
            E I     LV LN+     T   L    PL N+ SL   S +   N+++
Sbjct: 1097 ESIGTSKSLVRLNIE----TREELTDTTPLSNITSLEELSLRKCGNNLE 1141


>gi|434405929|ref|YP_007148814.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
           stagnale PCC 7417]
 gi|428260184|gb|AFZ26134.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
           stagnale PCC 7417]
          Length = 384

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 157/290 (54%), Gaps = 23/290 (7%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           D+KPLS LTNL  + I  +++ D  I  L  L KL  LNL     +   +  LS L +L 
Sbjct: 107 DIKPLSNLTNLTGINIYYNQIID--IKPLSNLTKLIYLNLIKNEFSD--IKPLSNLTNLI 162

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           YL L+R Q++D   +  S + +L  L+L  N+I+D  +  L  LT L  L L    I D 
Sbjct: 163 YLGLSRNQIND--IKPLSNLTNLTTLDLIENKISD--IEPLSNLTKLTYLTLIENKISD- 217

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
            +  L+ L NL  L L + ++  S ++HLS LT L  + LS   ISD  ++ L+ L++L 
Sbjct: 218 -IKPLSNLTNLTALYLWNNEI--SDIKHLSNLTKLTYLLLSENKISD--IKPLSNLTNLT 272

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
           SL LD  QI+D  +  L++LT LT+L+L   +I+D     L N  NL SL +    +  +
Sbjct: 273 SLGLDENQISD--IKPLSNLTNLTYLNLGLNQISDIKV--LSNLTNLTSLYLDYNQI--S 326

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
            ++ + +L++LT ++L  N  ++D  ++ +S +T L  L + N+ I    
Sbjct: 327 NIQPLFNLNNLTKIDLDYN-QISD--IKPLSNMTKLEKLEIQNNPIPDKA 373



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 148/317 (46%), Gaps = 48/317 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS L+NLT ++   N  I    +K  + L  L+ L+L     I     ++K L  L +L 
Sbjct: 111 LSNLTNLTGINIYYNQII---DIKPLSNLTKLIYLNL-----IKNEFSDIKPLSNLTNLI 162

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               +    +D+KPLS LTNL +L +  +K++D                          +
Sbjct: 163 YLGLSRNQINDIKPLSNLTNLTTLDLIENKISD--------------------------I 196

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           + LS L  L YL L   ++SD   +  S + +L  L L  NEI+D  + HL  LT L  L
Sbjct: 197 EPLSNLTKLTYLTLIENKISD--IKPLSNLTNLTALYLWNNEISD--IKHLSNLTKLTYL 252

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
            L    I D  +  L+ L NL  L L + Q+  S ++ LS LTNL  +NL    ISD  +
Sbjct: 253 LLSENKISD--IKPLSNLTNLTSLGLDENQI--SDIKPLSNLTNLTYLNLGLNQISD--I 306

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + L+ L++L SL LD  QI++  +  L +L  LT +DL   +I+D     L N   L  L
Sbjct: 307 KVLSNLTNLTSLYLDYNQISN--IQPLFNLNNLTKIDLDYNQISDIKP--LSNMTKLEKL 362

Query: 305 EICGGGLTDAGVKHIKD 321
           EI    + D     I +
Sbjct: 363 EIQNNPIPDKACPFIPE 379



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 90/262 (34%), Positives = 142/262 (54%), Gaps = 30/262 (11%)

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
           T  C  +   L  L  L L   ++SD   +  S + +L  L+LGFN+I D  +  L  LT
Sbjct: 60  TQNCNQANQKLTQLKELKLGSNKISD--IKPLSNLNNLIYLDLGFNQIID--IKPLSNLT 115

Query: 180 NLESLNLDSCGIGD-EGLVNLTGLCNLKCL--ELSDTQVGSSGLRHLSGLTNLESINLSF 236
           NL  +N+    I D + L NLT L  L  +  E SD       ++ LS LTNL  + LS 
Sbjct: 116 NLTGINIYYNQIIDIKPLSNLTKLIYLNLIKNEFSD-------IKPLSNLTNLIYLGLSR 168

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I+D  ++ L+ L++L +L+L   +I+D  +  L++LT LT+L L   +I+D     L 
Sbjct: 169 NQIND--IKPLSNLTNLTTLDLIENKISD--IEPLSNLTKLTYLTLIENKISDIKP--LS 222

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N  NL +L +    ++D  +KH+ +L+ LT L LS+N  ++D  ++ +S LT L SL + 
Sbjct: 223 NLTNLTALYLWNNEISD--IKHLSNLTKLTYLLLSEN-KISD--IKPLSNLTNLTSLGLD 277

Query: 357 NSRITSAGLRHLKPLKNLRSLT 378
            ++I+      +KPL NL +LT
Sbjct: 278 ENQIS-----DIKPLSNLTNLT 294



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 126/246 (51%), Gaps = 29/246 (11%)

Query: 4   NLSGLSNLTSLSF---RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           ++  LSNLT+L +    RN       +K  + L NL  LDL     I   + +++ L  L
Sbjct: 151 DIKPLSNLTNLIYLGLSRNQ---INDIKPLSNLTNLTTLDL-----IENKISDIEPLSNL 202

Query: 61  ESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
             L   +   I +  SD+KPLS LTNL +L +  ++++D  I +L  L KLT L L    
Sbjct: 203 TKL--TYLTLIENKISDIKPLSNLTNLTALYLWNNEISD--IKHLSNLTKLTYLLLSENK 258

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           ++   +  LS L +L  L L+  Q+SD   +  S + +L  LNLG N+I+D  +  L  L
Sbjct: 259 ISD--IKPLSNLTNLTSLGLDENQISD--IKPLSNLTNLTYLNLGLNQISD--IKVLSNL 312

Query: 179 TNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           TNL SL LD   I + + L NL    NL  ++L   Q+  S ++ LS +T LE + +   
Sbjct: 313 TNLTSLYLDYNQISNIQPLFNLN---NLTKIDLDYNQI--SDIKPLSNMTKLEKLEIQNN 367

Query: 238 GISDGS 243
            I D +
Sbjct: 368 PIPDKA 373


>gi|254416357|ref|ZP_05030110.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
 gi|196176795|gb|EDX71806.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
          Length = 438

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 164/336 (48%), Gaps = 48/336 (14%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+G SNLT L +  +N+IT   +   AGL NL  L LE        + ++  L +L +L 
Sbjct: 69  LAGFSNLTKL-YLESNSIT--DISPLAGLSNLTVLSLE-----SNSITDVSPLAELSNLT 120

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N  + +D+ PL+GL+NL  L ++ + +TD  I  L GL  LT+L L+   +T   +
Sbjct: 121 KLYLNNNSITDVSPLAGLSNLTKLYLNNNSITD--IGPLAGLSNLTVLYLDSNSITD--V 176

Query: 125 DSLSALGSLFYLNLNRCQLSD--------------------DGCEKFSKIGSLKVLNLGF 164
             L+ L +L  LNL    ++D                          +++ +L VL L  
Sbjct: 177 SPLAGLSNLTVLNLGNNSITDVNPLAELSNLTKVFLTNNSITNISPLAELSNLTVLYLYS 236

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ---VGS---S 218
           N ITD  +  L GL+NL  LNLD+  I D  +  L GL NL  L L +     +G    +
Sbjct: 237 NSITD--ISPLAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSLGNADFFIIGENSIT 292

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
            +  L+GL+NL  +NL    I+D  +  LA LS+L  L+L +  ITD  ++ L  L+ LT
Sbjct: 293 DISPLAGLSNLTVLNLGRNSITD--VSPLAELSNLTKLSLGSNSITD--ISPLAGLSNLT 348

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
            L L    ITD   + L    NL  L +    +TDA
Sbjct: 349 KLYLDSNSITD--VSPLAGLSNLTELFLSSNSITDA 382



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 168/343 (48%), Gaps = 45/343 (13%)

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
           W N ITD  + PL+G +NL  L +  + +TD  I+ L GL  LT+L+LE   +T   +  
Sbjct: 59  WDNSITD--ISPLAGFSNLTKLYLESNSITD--ISPLAGLSNLTVLSLESNSITD--VSP 112

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           L+ L +L  L LN   ++D      + + +L  L L  N ITD  +  L GL+NL  L L
Sbjct: 113 LAELSNLTKLYLNNNSITD--VSPLAGLSNLTKLYLNNNSITD--IGPLAGLSNLTVLYL 168

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISD---- 241
           DS  I D  +  L GL NL  L L +  +   + L  LS LT +   N S T IS     
Sbjct: 169 DSNSITD--VSPLAGLSNLTVLNLGNNSITDVNPLAELSNLTKVFLTNNSITNISPLAEL 226

Query: 242 -------------GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLT--HLDLF-- 283
                          +  LAGLS+L  LNLD   ITD + LA L++LT L+  + D F  
Sbjct: 227 SNLTVLYLYSNSITDISPLAGLSNLTVLNLDNNSITDISPLAGLSNLTELSLGNADFFII 286

Query: 284 -GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
               ITD   + L    NL  L +    +TD  V  + +LS+LT L+L  N  +TD  + 
Sbjct: 287 GENSITD--ISPLAGLSNLTVLNLGRNSITD--VSPLAELSNLTKLSLGSNS-ITD--IS 339

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
            ++GL+ L  L + ++ IT   +  L  L NL  L L S  +T
Sbjct: 340 PLAGLSNLTKLYLDSNSIT--DVSPLAGLSNLTELFLSSNSIT 380



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 134/280 (47%), Gaps = 48/280 (17%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLES 62
           L+GLSNLT L +  NN+IT  G    AGL NL  + LD    T +      L GL  L  
Sbjct: 135 LAGLSNLTKL-YLNNNSITDIG--PLAGLSNLTVLYLDSNSITDVSP----LAGLSNLTV 187

Query: 63  LNIKWCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAY 102
           LN+   N ITD                    +++ PL+ L+NL  L +  + +TD  I+ 
Sbjct: 188 LNLG-NNSITDVNPLAELSNLTKVFLTNNSITNISPLAELSNLTVLYLYSNSITD--ISP 244

Query: 103 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK---- 158
           L GL  LT+LNL+   +T   +  L+ L +L  L+L        G    + I  L     
Sbjct: 245 LAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSLGNADFFIIGENSITDISPLAGLSN 302

Query: 159 --VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
             VLNLG N ITD  +  L  L+NL  L+L S  I D  +  L GL NL  L L    + 
Sbjct: 303 LTVLNLGRNSITD--VSPLAELSNLTKLSLGSNSITD--ISPLAGLSNLTKLYLDSNSI- 357

Query: 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
            + +  L+GL+NL  + LS   I+D S   LA L++L+ L
Sbjct: 358 -TDVSPLAGLSNLTELFLSSNSITDAS--PLAQLTNLRRL 394


>gi|209154162|gb|ACI33313.1| F-box/LRR-repeat protein 14 [Salmo salar]
          Length = 403

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 181/339 (53%), Gaps = 50/339 (14%)

Query: 79  LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLF 134
           + G+ N++SL +  C  +TD+G+  A+++ +  L +LNL  C P+T + L  ++      
Sbjct: 89  IQGMPNIESLNLCGCFNLTDNGLGHAFVQDIPSLRILNLSLCKPITDSSLGRIAQ----- 143

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 191
           YL                   +L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 144 YLK------------------NLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHV 185

Query: 192 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 240
            D G+ +L G+          L+ L L D Q +    L+H+S GL NL+ +NLSF G IS
Sbjct: 186 SDVGIGHLAGMTRSAAEGCLFLEQLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCGGIS 245

Query: 241 DGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL- 295
           D  +  L+ ++ L SLNL +   I+DTG+   A+ SL  L+ LD+ F  +I D   AY+ 
Sbjct: 246 DSGMIHLSNMTHLWSLNLRSCDNISDTGIMHLAMGSLQ-LSGLDVSFCDKIGDQSLAYIA 304

Query: 296 RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSL 353
           +    L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  +
Sbjct: 305 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGI 364

Query: 354 NVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           ++   ++IT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 365 DLYGCTKITKRGLERITQLPCLKVLNLGLWQMTESEKVR 403



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 151/303 (49%), Gaps = 50/303 (16%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLK-- 104
           ++G+  +ESLN+  C  +TD+ +    +  + +L+ L +S C  +TDS +     YLK  
Sbjct: 89  IQGMPNIESLNLCGCFNLTDNGLGHAFVQDIPSLRILNLSLCKPITDSSLGRIAQYLKNL 148

Query: 105 ---------------------GLQKLTLLNLEGCPVTA-------ACLDSLSALGSLF-- 134
                                GL KL  LNL  C   +       A +   +A G LF  
Sbjct: 149 EVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLFLE 208

Query: 135 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 190
            L L  CQ L+D   +  SK + +LKVLNL F   I+D  ++HL  +T+L SLNL SC  
Sbjct: 209 QLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCGGISDSGMIHLSNMTHLWSLNLRSCDN 268

Query: 191 IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RK 246
           I D G+++L  G   L  L++S   ++G   L +++ GL  L+S++L    ISD  + R 
Sbjct: 269 ISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRM 328

Query: 247 LAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRS 303
           +  +  LK+LN+    +ITD GL  +   LT LT +DL+G  +IT  G   +     L+ 
Sbjct: 329 VRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKV 388

Query: 304 LEI 306
           L +
Sbjct: 389 LNL 391



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 30/236 (12%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 170 GLHKLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLFLEQLTLQDCQK----LTDLSLKH 225

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             KGL  L+ LN+ +C  I+DS M  LS +T+L SL + SC  ++D+GI +L  G  +L+
Sbjct: 226 VSKGLANLKVLNLSFCGGISDSGMIHLSNMTHLWSLNLRSCDNISDTGIMHLAMGSLQLS 285

Query: 111 LLNLEGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-F 164
            L++  C        SL+ +    Y    L+L  C +SDDG  +  + +  LK LN+G  
Sbjct: 286 GLDVSFCDKIGD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQC 343

Query: 165 NEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
             ITD+ L  +   LT L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 344 VRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 399



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 125/245 (51%), Gaps = 32/245 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   + ++  L  L    C  ++D+ +G    R    
Sbjct: 89  IQGMPNIESLNLCGCFNLTDNGLGHAFVQDIPSLRILNLSLCKPITDSSLG----RIAQY 144

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT-----GL 277
           L NLE + L   + I++  L  +A GL  LKSLNL + R ++D G+  L  +T     G 
Sbjct: 145 LKNLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 204

Query: 278 THLDLFG----ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             L+        ++TD    ++ +   NL+  +L  CGG ++D+G+ H+ +++ L  LNL
Sbjct: 205 LFLEQLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCGG-ISDSGMIHLSNMTHLWSLNL 263

Query: 331 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 387
               N++D   + L  G   L  L+VS   +I    L ++ + L  L+SL+L SC ++ +
Sbjct: 264 RSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 323

Query: 388 DIKRL 392
            I R+
Sbjct: 324 GINRM 328


>gi|290974572|ref|XP_002670019.1| leucine-rich repeat protein [Naegleria gruberi]
 gi|284083573|gb|EFC37275.1| leucine-rich repeat protein [Naegleria gruberi]
          Length = 334

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 109/200 (54%), Gaps = 1/200 (0%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L SL +   GIGDEG+  ++ L  L  L +S+ ++G  G++ +S L  L S+++S  
Sbjct: 134 MKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLN 193

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I    ++ ++ +  L SLN++  +I D G+  ++ L  LT L++    I D G   +  
Sbjct: 194 DIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISE 253

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
            K L SL I   G+ D GVK I +L  LT LN+S N  +  +  + IS +  L SL+++ 
Sbjct: 254 MKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNN-RIGAEGAKSISEMKQLTSLSINY 312

Query: 358 SRITSAGLRHLKPLKNLRSL 377
           ++I   G++ +  +K L SL
Sbjct: 313 NQIGDEGVKSISDMKQLTSL 332



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 110/204 (53%), Gaps = 3/204 (1%)

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           ++ +  L  L +SD  +G  G++ +S L  L S+N+S   I D  ++ ++ L  L SL++
Sbjct: 131 ISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDI 190

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
               I   G+ +++ +  LT L++   RI D G   +   K L SL I   G+ D GVK 
Sbjct: 191 SLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKL 250

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           I ++  LT LN+S N  + D+ ++ IS L  L SLN+SN+RI + G + +  +K L SL+
Sbjct: 251 ISEMKQLTSLNISNNG-IGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLS 309

Query: 379 LESCKVTANDIKRLQSRDLPNLVS 402
           +   ++    +K +   D+  L S
Sbjct: 310 INYNQIGDEGVKSI--SDMKQLTS 331



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 109/189 (57%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I D  +K +S L  L SL +S +++ D G+  +  L++LT L++    + A  + S+S
Sbjct: 145 NGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLNDIGAEGVKSIS 204

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            +  L  LN+N  ++ D+G +  S++  L  LN+  N I DE +  +  +  L SLN+ +
Sbjct: 205 EMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISEMKQLTSLNISN 264

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
            GIGDEG+ +++ L  L  L +S+ ++G+ G + +S +  L S+++++  I D  ++ ++
Sbjct: 265 NGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLSINYNQIGDEGVKSIS 324

Query: 249 GLSSLKSLN 257
            +  L SLN
Sbjct: 325 DMKQLTSLN 333



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 100/187 (53%)

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           + D+G +  S++  L  LN+  N I DE +  +  L  L SL++    IG EG+ +++ +
Sbjct: 147 IGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLNDIGAEGVKSISEM 206

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
             L  L ++  ++G  G++ +S L  L S+N+S  GI D  ++ ++ +  L SLN+    
Sbjct: 207 KQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISEMKQLTSLNISNNG 266

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
           I D G+ +++ L  LT L++   RI   GA  +   K L SL I    + D GVK I D+
Sbjct: 267 IGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLSINYNQIGDEGVKSISDM 326

Query: 323 SSLTLLN 329
             LT LN
Sbjct: 327 KQLTSLN 333



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 111/205 (54%)

Query: 77  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           K +S +  L SL IS + + D G+  +  L++LT LN+    +    +  +S L  L  L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           +++   +  +G +  S++  L  LN+ +N I DE +  +  L  L SLN+ + GIGDEG+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGV 248

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
             ++ +  L  L +S+  +G  G++ +S L  L S+N+S   I     + ++ +  L SL
Sbjct: 249 KLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSL 308

Query: 257 NLDARQITDTGLAALTSLTGLTHLD 281
           +++  QI D G+ +++ +  LT L+
Sbjct: 309 SINYNQIGDEGVKSISDMKQLTSLN 333



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 2/206 (0%)

Query: 150 KF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
           KF S++  L  L +  N I DE +  +  L  L SLN+ +  IGDEG+  ++ L  L  L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
           ++S   +G+ G++ +S +  L S+N+++  I D  ++ ++ L  L SLN+    I D G+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGV 248

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
             ++ +  LT L++    I D G   +   K L SL I    +   G K I ++  LT L
Sbjct: 249 KLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSL 308

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLN 354
           +++ N  + D+ ++ IS +  L SLN
Sbjct: 309 SINYN-QIGDEGVKSISDMKQLTSLN 333



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 107/203 (52%)

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161
           ++  +++LT L +    +    +  +S L  L  LN++  ++ D+G +  S++  L  L+
Sbjct: 130 FISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLD 189

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
           +  N+I  E +  +  +  L SLN++   IGDEG+  ++ L  L  L +S+  +G  G++
Sbjct: 190 ISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVK 249

Query: 222 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
            +S +  L S+N+S  GI D  ++ ++ L  L SLN+   +I   G  +++ +  LT L 
Sbjct: 250 LISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLS 309

Query: 282 LFGARITDSGAAYLRNFKNLRSL 304
           +   +I D G   + + K L SL
Sbjct: 310 INYNQIGDEGVKSISDMKQLTSL 332



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 1/172 (0%)

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           + +S +  L S+ +S  GI D  ++ ++ L  L SLN+   +I D G+  ++ L  LT L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
           D+    I   G   +   K L SL I    + D GVK I +L  LT LN+S N  + D+ 
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNG-IGDEG 247

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           ++LIS +  L SLN+SN+ I   G++ +  LK L SL + + ++ A   K +
Sbjct: 248 VKLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSI 299



 Score = 38.1 bits (87), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S L  LTSL+   NN I  +G+K  + +  L  L++        G+ ++  L +L SLN
Sbjct: 227 ISELKQLTSLNIS-NNGIGDEGVKLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLN 285

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113
           I   N I     K +S +  L SL I+ +++ D G+  +  +++LT LN
Sbjct: 286 IS-NNRIGAEGAKSISEMKQLTSLSINYNQIGDEGVKSISDMKQLTSLN 333


>gi|157865941|ref|XP_001681677.1| putative surface antigen protein [Leishmania major strain Friedlin]
 gi|68124975|emb|CAJ02737.1| putative surface antigen protein [Leishmania major strain Friedlin]
          Length = 776

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 170/360 (47%), Gaps = 4/360 (1%)

Query: 28  KAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLK 86
             ++ + +L  L+LE  T++ G L      MK L +LN++    ++ S       + +L+
Sbjct: 320 PGWSEMKSLTSLELE-GTQVSGTLPPRWSEMKSLRTLNLE-GTQVSGSLPPQWVSMASLR 377

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           +L +  ++V+ S       +  L  LNLEG  V+       S + SL  L L   Q+S  
Sbjct: 378 TLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGT 437

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
              ++S++ SL+ LNL   +++         + +L +LNL+   +        + + +L 
Sbjct: 438 LPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLT 497

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            LEL  TQV  +     S + +L ++NL  T +S     +   ++SL++LNL+  Q++ T
Sbjct: 498 SLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGT 557

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
                + +  LT L+L G +++ +        K+LR+L + G  ++ A      ++ SLT
Sbjct: 558 LPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGALPPGWGEMKSLT 617

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
            L L +   L+        G+  L +L +  ++++ +       L +LR+L LE  +V+ 
Sbjct: 618 NLYL-EGTQLSGSLPTEWRGMKSLTNLYLEGTQVSGSLPPQWSSLTSLRTLDLEGTQVSG 676



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 169/360 (46%), Gaps = 4/360 (1%)

Query: 28  KAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
             ++ + +L  L+LE  T++ G L      +  L +LN++    ++ S       + +L+
Sbjct: 248 PGWSEMKSLTNLELE-GTQVSGTLPPGWSSIKSLRTLNLE-GTQVSGSLPPEWVSMASLR 305

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           +L +  ++V+ +       ++ LT L LEG  V+       S + SL  LNL   Q+S  
Sbjct: 306 TLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGS 365

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
              ++  + SL+ LNL   +++         + +L +LNL+   +        + + +L 
Sbjct: 366 LPPQWVSMASLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLT 425

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            LEL  TQV  +     S + +L ++NL  T +S     +   ++SL++LNL+  Q++ T
Sbjct: 426 SLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGT 485

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
                + +  LT L+L G +++ +        K+LR+L + G  ++ +       ++SL 
Sbjct: 486 LPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLR 545

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
            LNL +   ++       S +  L SL +  ++++         +K+LR+L LE  +V+ 
Sbjct: 546 TLNL-EGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSG 604



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 166/359 (46%), Gaps = 3/359 (0%)

Query: 30  FAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 88
           ++ L NL KL L R  ++ G L      +  L  L I     IT +     S + +L++L
Sbjct: 177 WSWLPNLQKLVL-RQLQLSGTLPAEWSRVTSLLELEIVAAGDITGTLPPEWSSIKSLRTL 235

Query: 89  QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 148
            +  ++V+ +       ++ LT L LEG  V+       S++ SL  LNL   Q+S    
Sbjct: 236 NLEGTQVSGTLPPGWSEMKSLTNLELEGTQVSGTLPPGWSSIKSLRTLNLEGTQVSGSLP 295

Query: 149 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
            ++  + SL+ LNL   +++         + +L SL L+   +        + + +L+ L
Sbjct: 296 PEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTL 355

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
            L  TQV  S       + +L ++NL  T +S     +   ++SL++LNL+  Q++ T  
Sbjct: 356 NLEGTQVSGSLPPQWVSMASLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLP 415

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
              + +  LT L+L G +++ +        K+LR+L + G  ++ +       ++SL  L
Sbjct: 416 PGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTL 475

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387
           NL +   ++       S +  L SL +  ++++         +K+LR+L LE  +V+ +
Sbjct: 476 NL-EGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGS 533


>gi|443723521|gb|ELU11898.1| hypothetical protein CAPTEDRAFT_102929 [Capitella teleta]
          Length = 439

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 169/309 (54%), Gaps = 36/309 (11%)

Query: 103 LKGLQKLTLLNLEGCP-VTAACL-DSLSA-LGSLFYLNLNRCQLSDD-------GCEKFS 152
           ++G+  L  LNL GC  VT   +  +LS  L SL  LNL+ C++  D       G +K  
Sbjct: 131 VEGVPGLRSLNLSGCYNVTDVIMTHALSHDLPSLVSLNLSLCKVITDSTIACIAGHQK-- 188

Query: 153 KIGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN----- 204
               L+ L LG   +IT   L+ L  GL+NL  LNL SC  I DEG+  LTG  +     
Sbjct: 189 ---QLQELELGGCAQITTNALLLLACGLSNLRRLNLRSCCKITDEGVAYLTGQSHTVPTG 245

Query: 205 ---LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 258
              L+ + L D Q +    L++LS G + L+S+NLSF TG++D  L  L+ + SL+ L+L
Sbjct: 246 TAMLEHIVLQDCQKITDVSLKYLSLGFSQLKSVNLSFCTGVTDSGLECLSRMPSLQELDL 305

Query: 259 DA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRN-FKNLRSLEICGGGLTDA 314
            A   I+D G+  L   LT L+ L L F  RITD+   ++ +   +L +L +C   ++D 
Sbjct: 306 RACDGISDHGVGYLAEGLTRLSVLHLSFCDRITDTALLHISHGLIHLTALSLCDCSISDE 365

Query: 315 GVKH-IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 371
           G++H I     +  LN+ Q   LTD +LELI+   T L ++++   +RIT  G++HL+  
Sbjct: 366 GIQHLIGSSQDIVKLNIGQCDRLTDASLELIAQNFTQLHTIDIYGCTRITKLGVKHLRDQ 425

Query: 372 KNLRSLTLE 380
            ++ ++ +E
Sbjct: 426 PHISAINME 434



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 160/303 (52%), Gaps = 26/303 (8%)

Query: 54  LKGLMKLESLNIKWCNCITDSDM-KPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQK-L 109
           ++G+  L SLN+  C  +TD  M   LS  L +L SL +S C  +TDS IA + G QK L
Sbjct: 131 VEGVPGLRSLNLSGCYNVTDVIMTHALSHDLPSLVSLNLSLCKVITDSTIACIAGHQKQL 190

Query: 110 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS------KIGSLKVL 160
             L L GC    T A L     L +L  LNL  C +++D+G    +        G+  + 
Sbjct: 191 QELELGGCAQITTNALLLLACGLSNLRRLNLRSCCKITDEGVAYLTGQSHTVPTGTAMLE 250

Query: 161 NLGFNE---ITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ- 214
           ++   +   ITD  L +L  G + L+S+NL  C G+ D GL  L+ + +L+ L+L     
Sbjct: 251 HIVLQDCQKITDVSLKYLSLGFSQLKSVNLSFCTGVTDSGLECLSRMPSLQELDLRACDG 310

Query: 215 VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL 271
           +   G+ +L+ GLT L  ++LSF   I+D +L  ++ GL  L +L+L    I+D G+  L
Sbjct: 311 ISDHGVGYLAEGLTRLSVLHLSFCDRITDTALLHISHGLIHLTALSLCDCSISDEGIQHL 370

Query: 272 T-SLTGLTHLDLFGA-RITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 327
             S   +  L++    R+TD+    + +NF  L +++I G   +T  GVKH++D   ++ 
Sbjct: 371 IGSSQDIVKLNIGQCDRLTDASLELIAQNFTQLHTIDIYGCTRITKLGVKHLRDQPHISA 430

Query: 328 LNL 330
           +N+
Sbjct: 431 INM 433



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 124/255 (48%), Gaps = 48/255 (18%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVK--------LDLERCTRIHGGLVNLK--- 55
           GLSNL  L+ R    IT +G+    G  + V         + L+ C +I    V+LK   
Sbjct: 212 GLSNLRRLNLRSCCKITDEGVAYLTGQSHTVPTGTAMLEHIVLQDCQKITD--VSLKYLS 269

Query: 56  -GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLL 112
            G  +L+S+N+ +C  +TDS ++ LS + +L+ L + +C  ++D G+ YL +GL +L++L
Sbjct: 270 LGFSQLKSVNLSFCTGVTDSGLECLSRMPSLQELDLRACDGISDHGVGYLAEGLTRLSVL 329

Query: 113 NLEGCP-VTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLG-FNE 166
           +L  C  +T   L  +S  L  L  L+L  C +SD+G +    IGS   +  LN+G  + 
Sbjct: 330 HLSFCDRITDTALLHISHGLIHLTALSLCDCSISDEGIQHL--IGSSQDIVKLNIGQCDR 387

Query: 167 ITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           +TD  L  + +  T L ++++  C                       T++   G++HL  
Sbjct: 388 LTDASLELIAQNFTQLHTIDIYGC-----------------------TRITKLGVKHLRD 424

Query: 226 LTNLESINLSFTGIS 240
             ++ +IN+     S
Sbjct: 425 QPHISAINMELFAAS 439


>gi|290994542|ref|XP_002679891.1| predicted protein [Naegleria gruberi]
 gi|284093509|gb|EFC47147.1| predicted protein [Naegleria gruberi]
          Length = 359

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 143/304 (47%), Gaps = 1/304 (0%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           + A+G    + L +L  LD+     +  G   ++ + +L  LNI   N I     K +  
Sbjct: 51  VNAEGANMISNLAHLADLDISNNQLLERGSKIIREMTQLTKLNISRNN-INAGGTKSICE 109

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           +T L  L IS + + + G +Y+ G+ KLT L++    +    + SL  + +L  LN++ C
Sbjct: 110 MTQLTDLDISNNFIGNEGASYIGGMTKLTNLSISENHIGVEGIKSLFHINNLICLNISSC 169

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           ++ D+G    S++  L  L +  NEI       +  +  L  LN+    +G+EG   +  
Sbjct: 170 KIGDEGARLISEMKQLTTLEISHNEIGSYGSKAISEMYQLTKLNIRYNVLGNEGAHYIGI 229

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           +  L  L++S  ++   G + LS L+ L  ++++   I D  ++ ++ L  L  L++   
Sbjct: 230 MEQLTELDISHNRISGEGAKSLSKLSQLTKLDINTNEIGDEGMKSISKLDQLLYLDIGEN 289

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           +I D G   +  ++ LT L +   R+ + GA  L     L  L+IC   + D  ++ +  
Sbjct: 290 EIGDIGTGLIIGMSKLTELLINDNRVGNDGAESLAQMHQLTQLDICNNPVNDDSLELLSK 349

Query: 322 LSSL 325
           L  L
Sbjct: 350 LPDL 353



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 157/348 (45%), Gaps = 11/348 (3%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 115
           G+  L S  +K CN I       + G   L  L +S   V   G   +  L  L  L++ 
Sbjct: 20  GIGTLVSDTVKLCNFI------RMCG--KLTKLDVSSWLVNAEGANMISNLAHLADLDIS 71

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
              +       +  +  L  LN++R  ++  G +   ++  L  L++  N I +E   ++
Sbjct: 72  NNQLLERGSKIIREMTQLTKLNISRNNINAGGTKSICEMTQLTDLDISNNFIGNEGASYI 131

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
            G+T L +L++    IG EG+ +L  + NL CL +S  ++G  G R +S +  L ++ +S
Sbjct: 132 GGMTKLTNLSISENHIGVEGIKSLFHINNLICLNISSCKIGDEGARLISEMKQLTTLEIS 191

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
              I     + ++ +  L  LN+    + + G   +  +  LT LD+   RI+  GA  L
Sbjct: 192 HNEIGSYGSKAISEMYQLTKLNIRYNVLGNEGAHYIGIMEQLTELDISHNRISGEGAKSL 251

Query: 296 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
                L  L+I    + D G+K I  L  L  L++ +N  + D    LI G++ L  L +
Sbjct: 252 SKLSQLTKLDINTNEIGDEGMKSISKLDQLLYLDIGEN-EIGDIGTGLIIGMSKLTELLI 310

Query: 356 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
           +++R+ + G   L  +  L  L +  C    ND        LP+L++F
Sbjct: 311 NDNRVGNDGAESLAQMHQLTQLDI--CNNPVNDDSLELLSKLPDLINF 356


>gi|326513166|dbj|BAK06823.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 627

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 186/441 (42%), Gaps = 67/441 (15%)

Query: 21  AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           A+ A+ +        L  L L  C ++ H  +  L G+  L+ L++  C+ ITD+ +K +
Sbjct: 107 AVDAEWLAYLGSFRYLGVLKLADCKKVDHSAIWPLSGMSMLKELDLSRCSKITDAGIKHI 166

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
             + +L+ L +S + +TD+G+  +  L+ L LL+L G  +T   L SL  L  L +L++ 
Sbjct: 167 VSIDSLEKLHLSETGLTDNGVMLISALKGLILLDLGGIHMTDKALRSLQVLTQLEHLDVW 226

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI-----GDE 194
             +++D+G         L+ LN+ +  +T      L  L N++ LN+ +C I     GD 
Sbjct: 227 GSEITDEGASILEAFTGLRFLNVSWTHVT-----RLPHLPNMKYLNMSNCTIYSICGGDS 281

Query: 195 ---------------------------------------GLVNLTGLCNLKCLE---LSD 212
                                                   L NL GL  +K LE   +S 
Sbjct: 282 EVHIPLQKFTASAASFGDIDEVFSSIVASSFSFLDMSGCSLSNLYGLQKMKSLEHLDISL 341

Query: 213 TQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAA 270
            +V    + +++ +   L  ++L  TGI+  +L  LAG + +L SL+L   +I D+ L  
Sbjct: 342 NRVTDDAVEYVANIGMKLRYLSLKNTGITSQALCILAGTVPNLASLSLAYTKIDDSALVY 401

Query: 271 LTSLTGLTHLDLFGARITD-----------SGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
           ++ +  L  +DL    I                  L +   L SL +    L+D  +  +
Sbjct: 402 ISMMPSLRVIDLSHTTIKGFTRVEANSEKIPSLPLLEHLIYLESLNLEDAPLSDEVIPPM 461

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
               +L  L L  +  L+D  L  +S  + L+ L    S ++++GL    P   L  L L
Sbjct: 462 TSFRALKYLYLKSDF-LSDPGLHALSSASNLIHLGFCGSVLSNSGLLEFVPPAQLHVLDL 520

Query: 380 ESCKVTANDIKRLQSRDLPNL 400
             C +   D      R  P++
Sbjct: 521 SGCWILTGDAISTFRRHHPSI 541



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 170/390 (43%), Gaps = 72/390 (18%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV---NLKGLMKLE 61
           LSG+S L  L   R + IT  G+K    + +L KL L        G++    LKGL+ L+
Sbjct: 141 LSGMSMLKELDLSRCSKITDAGIKHIVSIDSLEKLHLSETGLTDNGVMLISALKGLILLD 200

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
              I     +TD  ++ L  LT L+ L +  S++TD G + L+    L  LN+    VT 
Sbjct: 201 LGGIH----MTDKALRSLQVLTQLEHLDVWGSEITDEGASILEAFTGLRFLNVSWTHVT- 255

Query: 122 ACLDSLSALGSLFYLNLNRCQLSD-----------------------DGCEKFS------ 152
                L  L ++ YLN++ C +                         D  E FS      
Sbjct: 256 ----RLPHLPNMKYLNMSNCTIYSICGGDSEVHIPLQKFTASAASFGDIDEVFSSIVASS 311

Query: 153 ------------------KIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGD 193
                             K+ SL+ L++  N +TD+ + ++  +   L  L+L + GI  
Sbjct: 312 FSFLDMSGCSLSNLYGLQKMKSLEHLDISLNRVTDDAVEYVANIGMKLRYLSLKNTGITS 371

Query: 194 EGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----------- 241
           + L  L G + NL  L L+ T++  S L ++S + +L  I+LS T I             
Sbjct: 372 QALCILAGTVPNLASLSLAYTKIDDSALVYISMMPSLRVIDLSHTTIKGFTRVEANSEKI 431

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
            SL  L  L  L+SLNL+   ++D  +  +TS   L +L L    ++D G   L +  NL
Sbjct: 432 PSLPLLEHLIYLESLNLEDAPLSDEVIPPMTSFRALKYLYLKSDFLSDPGLHALSSASNL 491

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
             L  CG  L+++G+      + L +L+LS
Sbjct: 492 IHLGFCGSVLSNSGLLEFVPPAQLHVLDLS 521


>gi|299066813|emb|CBJ38007.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
           solanacearum CMR15]
          Length = 457

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 172/376 (45%), Gaps = 30/376 (7%)

Query: 6   SGLSNLTSLSFRR----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           +G+++L+ L   R    N  I A+G +  A    L  L++        G   L G M+L 
Sbjct: 80  AGMAHLSRLPLVRLNVRNKRIGAKGARLLANHPTLTSLNVSNNRIGPEGAQALAGNMRLT 139

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +LN+   N +   + K L+    L+SL +S +++ D                 EG  V A
Sbjct: 140 TLNVS-GNRLGVEEAKALAANQTLRSLDVSDNRIGD-----------------EGARVLA 181

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           AC         L  L+ NR  +  DG    +   +L+ L +G N I D  ++ L     L
Sbjct: 182 ACT-------QLTTLDANRNGIGVDGATALAACPTLRSLGIGGNAIGDAGVLALAANARL 234

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            +LN++S G+G  G+  L     L  L L    +G++G   L+  T L +++L+   I  
Sbjct: 235 TTLNVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATALAASTRLTTLHLARNKIGA 294

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
              + LA  + L +L+L   +I DTG+ AL +   L  L +    + D  A  L   + L
Sbjct: 295 EGAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLTVRRNDLKDESAVILAASRTL 354

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
            +L++ G G+ D G K +    +LT L++S N ++ +     ++    LV L++ ++R+ 
Sbjct: 355 TTLDLSGNGIEDQGAKALAANPTLTTLDVSSN-DIKNAGARALAANARLVWLDLRHNRME 413

Query: 362 SAGLRHLKPLKNLRSL 377
            AG R L   + L SL
Sbjct: 414 EAGTRALLANRTLSSL 429



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 137/291 (47%), Gaps = 10/291 (3%)

Query: 103 LKGLQK-LTLLNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 159
           L+GL   L  L+L  C  P+TAA +  LS L  L  LN+   ++   G    +   +L  
Sbjct: 58  LRGLPASLKELDLSQCRGPITAAGMAHLSRL-PLVRLNVRNKRIGAKGARLLANHPTLTS 116

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           LN+  N I  E    L G   L +LN+    +G E    L     L+ L++SD ++G  G
Sbjct: 117 LNVSNNRIGPEGAQALAGNMRLTTLNVSGNRLGVEEAKALAANQTLRSLDVSDNRIGDEG 176

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
            R L+  T L +++ +  GI       LA   +L+SL +    I D G+ AL +   LT 
Sbjct: 177 ARVLAACTQLTTLDANRNGIGVDGATALAACPTLRSLGIGGNAIGDAGVLALAANARLTT 236

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L++    +   G   L   K L  L + G G+ +AG   +   + LT L+L++N  +  +
Sbjct: 237 LNVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATALAASTRLTTLHLARN-KIGAE 295

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
             + ++  T L +L++  ++I   G+R L     L SLT     V  ND+K
Sbjct: 296 GAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLT-----VRRNDLK 341



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 158/340 (46%), Gaps = 9/340 (2%)

Query: 53  NLKGL-MKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +L+GL   L+ L++  C   IT + M  LS L  L  L +   ++   G   L     LT
Sbjct: 57  DLRGLPASLKELDLSQCRGPITAAGMAHLSRLP-LVRLNVRNKRIGAKGARLLANHPTLT 115

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
            LN+    +      +L+    L  LN++  +L  +  +  +   +L+ L++  N I DE
Sbjct: 116 SLNVSNNRIGPEGAQALAGNMRLTTLNVSGNRLGVEEAKALAANQTLRSLDVSDNRIGDE 175

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
               L   T L +L+ +  GIG +G   L     L+ L +    +G +G+  L+    L 
Sbjct: 176 GARVLAACTQLTTLDANRNGIGVDGATALAACPTLRSLGIGGNAIGDAGVLALAANARLT 235

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           ++N+  TG+    +  LA   +L  L LD   I + G  AL + T LT L L   +I   
Sbjct: 236 TLNVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATALAASTRLTTLHLARNKIGAE 295

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
           GA  L     L +L++    + D GV+ +   ++L  L + +N +L D++  +++    L
Sbjct: 296 GAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLTVRRN-DLKDESAVILAASRTL 354

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
            +L++S + I   G + L       + TL +  V++NDIK
Sbjct: 355 TTLDLSGNGIEDQGAKALAA-----NPTLTTLDVSSNDIK 389



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 105/228 (46%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L+    L+SL I  + + D+G+  L    +LT LN+E   V A  + +L+A  +L +L L
Sbjct: 204 LAACPTLRSLGIGGNAIGDAGVLALAANARLTTLNVESTGVGAVGVGALAASKALTWLRL 263

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           +   + + G    +    L  L+L  N+I  E    L   T L +L+L    IGD G+  
Sbjct: 264 DGNGIGNAGATALAASTRLTTLHLARNKIGAEGAQALAANTKLTTLDLGYNKIGDTGVRA 323

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L     L  L +    +       L+    L +++LS  GI D   + LA   +L +L++
Sbjct: 324 LAANATLVSLTVRRNDLKDESAVILAASRTLTTLDLSGNGIEDQGAKALAANPTLTTLDV 383

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
            +  I + G  AL +   L  LDL   R+ ++G   L   + L SL +
Sbjct: 384 SSNDIKNAGARALAANARLVWLDLRHNRMEEAGTRALLANRTLSSLGV 431


>gi|149174147|ref|ZP_01852775.1| hypothetical protein PM8797T_13198 [Planctomyces maris DSM 8797]
 gi|148847127|gb|EDL61462.1| hypothetical protein PM8797T_13198 [Planctomyces maris DSM 8797]
          Length = 476

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 20/198 (10%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           + +TD  ++  +    +  L +S SKVTD+GI YL+G  +L  LNL G  VT A L+ L 
Sbjct: 265 SAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTEVTDATLEHLK 324

Query: 129 ALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKV-----------------LNLGFNEITDE 170
            L  L  +NL   Q+S  G  E  +   S+++                 L L    +T E
Sbjct: 325 GLPELHSVNLRGTQVSPRGVLELIASSDSMQIAFPGGWVWKLENAHGFQLKLSSPAVTGE 384

Query: 171 CLVHLKGLTNLES-LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
            L+ L G   +++ L+LD   + DEGL +L G  +L+ L +S+TQ+ S+GL HL+GL +L
Sbjct: 385 -LLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLRTLRISNTQISSAGLNHLAGLASL 443

Query: 230 ESINLSFTGISDGSLRKL 247
             ++L  + ++D  + KL
Sbjct: 444 RELDLRGSAVADEDINKL 461



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 10/221 (4%)

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           T  ESL      + D+ L +      +  L LS ++V  +G+ +L G T L S+NLS T 
Sbjct: 257 TGFESLG--HSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTE 314

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           ++D +L  L GL  L S+NL   Q++  G+  L + +    +   G  +     A+    
Sbjct: 315 VTDATLEHLKGLPELHSVNLRGTQVSPRGVLELIASSDSMQIAFPGGWVWKLENAHGFQL 374

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
           K L S  + G  L   G   ++       L+L     LTD+ L  + G   L +L +SN+
Sbjct: 375 K-LSSPAVTGELLKLFGTVRVQ-----AYLDL-DGIALTDEGLASLGGFEDLRTLRISNT 427

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
           +I+SAGL HL  L +LR L L    V   DI +LQ R LPN
Sbjct: 428 QISSAGLNHLAGLASLRELDLRGSAVADEDINKLQ-RALPN 467



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 6/196 (3%)

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           + +L    ++D     F+    +  L L  +++TD  + +L+G T L SLNL    + D 
Sbjct: 259 FESLGHSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTEVTDA 318

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
            L +L GL  L  + L  TQV   G+  L  + + +S+ ++F G   G + KL      +
Sbjct: 319 TLEHLKGLPELHSVNLRGTQVSPRGVLEL--IASSDSMQIAFPG---GWVWKLENAHGFQ 373

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
            L L +  +T   L    ++    +LDL G  +TD G A L  F++LR+L I    ++ A
Sbjct: 374 -LKLSSPAVTGELLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLRTLRISNTQISSA 432

Query: 315 GVKHIKDLSSLTLLNL 330
           G+ H+  L+SL  L+L
Sbjct: 433 GLNHLAGLASLRELDL 448



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 19/196 (9%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           ++A+T Q ++ F     +  L L R      G+  L+G  +L SLN+     +TD+ ++ 
Sbjct: 264 HSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLS-GTEVTDATLEH 322

Query: 79  LSGLTNLKSLQISCSKVTDSG------------IAYLKG-LQKLT-----LLNLEGCPVT 120
           L GL  L S+ +  ++V+  G            IA+  G + KL       L L    VT
Sbjct: 323 LKGLPELHSVNLRGTQVSPRGVLELIASSDSMQIAFPGGWVWKLENAHGFQLKLSSPAVT 382

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
              L     +    YL+L+   L+D+G         L+ L +   +I+   L HL GL +
Sbjct: 383 GELLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLRTLRISNTQISSAGLNHLAGLAS 442

Query: 181 LESLNLDSCGIGDEGL 196
           L  L+L    + DE +
Sbjct: 443 LRELDLRGSAVADEDI 458



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 51/111 (45%)

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +FT I+ G    +         +L    +TD  L        ++ L L  +++TD+G  Y
Sbjct: 239 AFTTIAAGDEISMVEFRDTGFESLGHSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEY 298

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           LR    L SL + G  +TDA ++H+K L  L  +NL          LELI+
Sbjct: 299 LRGATRLYSLNLSGTEVTDATLEHLKGLPELHSVNLRGTQVSPRGVLELIA 349


>gi|46447283|ref|YP_008648.1| hypothetical protein pc1649 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400924|emb|CAF24373.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 521

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/208 (39%), Positives = 115/208 (55%), Gaps = 7/208 (3%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           ++E LN      +TD+ +  L    NLK LQ+ SC  +TD+G+A L  L  L  LNL GC
Sbjct: 291 EIEGLNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGC 350

Query: 118 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 174
             +T A L  L+ L +L YL+L  C +L+  G   F  + +L+ LNL G   I D  L H
Sbjct: 351 KKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAH 410

Query: 175 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 232
           L  L  L+ LNL  C  + D GL +L  L  LK L+LS    + ++GL HL  L  L+ +
Sbjct: 411 LTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYL 470

Query: 233 NLS-FTGISDGSLRKLAGLSSLKSLNLD 259
           NLS    +S+  L  LA L+SL+ LNL+
Sbjct: 471 NLSGCIYLSEAGLAHLAPLTSLQHLNLE 498



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 125/253 (49%), Gaps = 33/253 (13%)

Query: 149 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 204
           EK     S ++  L F+E   +TD  L+ LK   NL+ L L SC  + D GL  L  L N
Sbjct: 282 EKILNYFSNEIEGLNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTN 341

Query: 205 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 261
           L+ L L+   ++  +GL HL+ L NL+ ++L F   ++   L     L +L+ LNL   +
Sbjct: 342 LQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCK 401

Query: 262 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 319
            I D GLA LT L  L +L+L     +TD+G A+L     L+ L++     LT+AG+ H+
Sbjct: 402 FIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHL 461

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             L +L  LNLS                 G + L       + AGL HL PL +L+ L L
Sbjct: 462 VHLVALQYLNLS-----------------GCIYL-------SEAGLAHLAPLTSLQHLNL 497

Query: 380 ESCKVTANDIKRL 392
           E C+   N   RL
Sbjct: 498 EDCEHFTNARFRL 510



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 112/222 (50%), Gaps = 9/222 (4%)

Query: 14  LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 72
           L+F  N  +T   + A     NL  L L+ C  +   GL  L  L  L+ LN+  C  +T
Sbjct: 295 LNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLT 354

Query: 73  DSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSAL 130
           D+ +  L+ L NL+ L +  C K+T  G+ + K L  L  LNL GC  +    L  L+ L
Sbjct: 355 DAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAHLTPL 414

Query: 131 GSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 188
            +L YLNL++C  L+D G      + +LK L+L + N +T+  L HL  L  L+ LNL  
Sbjct: 415 VALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYLNLSG 474

Query: 189 C-GIGDEGLVNLTGLCNLKCLELSDTQVGSSG---LRHLSGL 226
           C  + + GL +L  L +L+ L L D +  ++    L H   L
Sbjct: 475 CIYLSEAGLAHLAPLTSLQHLNLEDCEHFTNARFRLAHFKAL 516



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 26/188 (13%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESL 63
           L  L+NL  L+      +T  G+     L+NL  LDL  C ++   GL + K L+ L+ L
Sbjct: 336 LPSLTNLQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHL 395

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTA 121
           N+  C  I D+ +  L+ L  L+ L +S C+ +TD+G+A+L  L  L  L+L  C  +T 
Sbjct: 396 NLSGCKFIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTN 455

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           A L  L  L +L YLNL+       GC   S+ G                L HL  LT+L
Sbjct: 456 AGLAHLVHLVALQYLNLS-------GCIYLSEAG----------------LAHLAPLTSL 492

Query: 182 ESLNLDSC 189
           + LNL+ C
Sbjct: 493 QHLNLEDC 500


>gi|334119190|ref|ZP_08493277.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
           FGP-2]
 gi|333458661|gb|EGK87278.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
           FGP-2]
          Length = 489

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 175/342 (51%), Gaps = 33/342 (9%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 115
              KL S+   + N    +D+KPL  LTNL  L +S +++ D  I  L+ L  LT L L 
Sbjct: 81  AYQKLSSIEELYLNDKKINDIKPLESLTNLTGLVLSDNQIND--IKPLESLTNLTKLYLG 138

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
              +    +  L +L +L  L L+  ++SD   +    + +L  L+L  N+  D  +  L
Sbjct: 139 NNKIKD--IKPLQSLTNLTQLGLHNTRISD--IKPLQSLTNLTKLDLSNNKTLD--IKPL 192

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
           + LTNL  L LD+  I D  +  L  L NL  L+L   Q+    ++ L  LTNL S++L 
Sbjct: 193 QSLTNLTKLYLDNNKIKD--IKPLESLTNLTHLQLMSNQIK--DIKPLESLTNLTSLHLY 248

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
              ISD  ++ L  L+ L  L LD  +I+D  +  L SLT LT + L   +I+D     L
Sbjct: 249 NNQISD--IKPLESLTKLTWLWLDNNKISD--IKPLKSLTNLTEIKLGSNKISDIKP--L 302

Query: 296 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
            +  NL SL +    ++D  +K ++ L+ LT L L  N     K LE ++ LTG+V   +
Sbjct: 303 ESLTNLTSLYLHNNQISD--IKPLESLTKLTSLWLINNQISDIKPLESLTNLTGIV---L 357

Query: 356 SNSRITSAGLRHLKPLKNLRSLTLESCKVTAN---DIKRLQS 394
           SN+RI+      +KPL++L  LTL    +T N   DIK L+S
Sbjct: 358 SNNRISD-----IKPLESLNKLTL--LALTNNQISDIKPLES 392



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 170/368 (46%), Gaps = 58/368 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L  L+NLT L    N       +K    L NL KL L      +  + ++K L  L +L 
Sbjct: 104 LESLTNLTGLVLSDNQI---NDIKPLESLTNLTKLYLG-----NNKIKDIKPLQSLTNLT 155

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               +    SD+KPL  LTNL  L +S +K  D     +K LQ LT L            
Sbjct: 156 QLGLHNTRISDIKPLQSLTNLTKLDLSNNKTLD-----IKPLQSLTNL------------ 198

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
                  +  YL+ N+ +      +    + +L  L L  N+I D  +  L+ LTNL SL
Sbjct: 199 -------TKLYLDNNKIK----DIKPLESLTNLTHLQLMSNQIKD--IKPLESLTNLTSL 245

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           +L +  I D  +  L  L  L  L L + ++  S ++ L  LTNL  I L    ISD  +
Sbjct: 246 HLYNNQISD--IKPLESLTKLTWLWLDNNKI--SDIKPLKSLTNLTEIKLGSNKISD--I 299

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + L  L++L SL L   QI+D  +  L SLT LT L L   +I+D     L +  NL  +
Sbjct: 300 KPLESLTNLTSLYLHNNQISD--IKPLESLTKLTSLWLINNQISDIKP--LESLTNLTGI 355

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
            +    ++D  +K ++ L+ LTLL L+ N     K LE ++ LTG+V        + S  
Sbjct: 356 VLSNNRISD--IKPLESLNKLTLLALTNNQISDIKPLESLTNLTGIV--------LMSNQ 405

Query: 365 LRHLKPLK 372
           ++ +KPL+
Sbjct: 406 IQDIKPLQ 413



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 133/304 (43%), Gaps = 66/304 (21%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L  L+NLT L    N     + +K    L NL  L L      +  + ++K L  L  L 
Sbjct: 214 LESLTNLTHLQLMSNQI---KDIKPLESLTNLTSLHL-----YNNQISDIKPLESLTKLT 265

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             W +    SD+KPL  LTNL  +++  +K++D                          L
Sbjct: 266 WLWLDNNKISDIKPLKSLTNLTEIKLGSNKISD-----------------------IKPL 302

Query: 125 DSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           +SL+ L SL+   L+  Q+SD    E  +K+ SL ++N   N+I+D  +  L+ LTNL  
Sbjct: 303 ESLTNLTSLY---LHNNQISDIKPLESLTKLTSLWLIN---NQISD--IKPLESLTNLTG 354

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-- 241
           + L +  I D  +  L  L  L  L L++ Q+  S ++ L  LTNL  I L    I D  
Sbjct: 355 IVLSNNRISD--IKPLESLNKLTLLALTNNQI--SDIKPLESLTNLTGIVLMSNQIQDIK 410

Query: 242 ------------------GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
                               ++ L  L++L  L+L+  QI+D  +  L SLT LT + L 
Sbjct: 411 PLQSLTNLTLLALTNNKISDIKPLQSLTNLTLLSLEKNQISD--IKPLESLTNLTEIRLS 468

Query: 284 GARI 287
           G  I
Sbjct: 469 GNPI 472


>gi|51850107|dbj|BAD42395.1| leucine-rich repeat protein [Ralstonia solanacearum]
          Length = 538

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 171/376 (45%), Gaps = 30/376 (7%)

Query: 6   SGLSNLTSLSFRR----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           +G+++L+ L   R    N  I A+G +  A    L  L++        G   L    +L 
Sbjct: 161 AGIAHLSRLPLVRLNVRNKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLT 220

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +LN+   N I  +  K L+    L+SL +S +++ D G   L                 A
Sbjct: 221 TLNVS-GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL-----------------A 262

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           AC         L  L+ NR  +  DG    +   +L  L +G NEI D  ++ L     L
Sbjct: 263 ACTQ-------LTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARL 315

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            +LN++S G+G +G+  L     L  L L    +G++G   L+  T+L +++L  + I  
Sbjct: 316 TTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGA 375

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
              + LA  + L +L+L    I D G+  L++   L  L +    + D+ A  L   K L
Sbjct: 376 EGAQALAANTKLTTLDLGYNDIGDAGVRTLSANATLVWLSVRRNNLEDASAVSLAAGKTL 435

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
            +L+I G G+ D G K +    +LT L++S N ++ +     ++    LVSL++ N+R+ 
Sbjct: 436 TTLDISGNGIQDQGAKALAANPTLTTLDVSSN-DIRNAGARALAANARLVSLDLRNNRME 494

Query: 362 SAGLRHLKPLKNLRSL 377
            +G R L   + L SL
Sbjct: 495 ESGTRALLANRTLSSL 510



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 185/404 (45%), Gaps = 42/404 (10%)

Query: 17  RRNNAITAQGMKAFAGLINL-VKLDL-ERCTRIHGGLVNL---KGLMKLESLNIKWCNCI 71
           RR++ +T Q ++  +  +   ++ D+ E   +   GL  +        LE L +      
Sbjct: 77  RRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYPALEKLTL--AGTF 134

Query: 72  TDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGL----------------------- 106
           TD D++ L    +LK+L +S C   +T +GIA+L  L                       
Sbjct: 135 TDDDLRGLP--ASLKALDLSRCRGPITAAGIAHLSRLPLVRLNVRNKRIGAEGARLLANH 192

Query: 107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
             LT LN+    +      +L+A   L  LN++  ++   G +  +   +L+ L++  N 
Sbjct: 193 PTLTSLNVSNGRIGPEGAQALAANTRLTTLNVSGNRIGVAGAKALAANQTLRSLDVSDNR 252

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           I DE    L   T L +L+ +  GIG +G   L     L  L +   ++G +G+  L+  
Sbjct: 253 IGDEGARELAACTQLTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAAN 312

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
             L ++N+  TG+    ++ LA   +L  L LD   I + G  AL + T LT L L  +R
Sbjct: 313 ARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSR 372

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELIS 345
           I   GA  L     L +L++    + DAGV+ +   ++L  L++ +N NL D + + L +
Sbjct: 373 IGAEGAQALAANTKLTTLDLGYNDIGDAGVRTLSANATLVWLSVRRN-NLEDASAVSLAA 431

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 389
           G T L +L++S + I   G + L       + TL +  V++NDI
Sbjct: 432 GKT-LTTLDISGNGIQDQGAKALA-----ANPTLTTLDVSSNDI 469



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 149/327 (45%), Gaps = 8/327 (2%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK---LESLNIKW 67
           LTSL+   N  I  +G +A A    L  L++    RI  G+   K L     L SL++  
Sbjct: 195 LTSLNVS-NGRIGPEGAQALAANTRLTTLNVS-GNRI--GVAGAKALAANQTLRSLDVS- 249

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N I D   + L+  T L +L  + + +   G   L   + LT L + G  +  A + +L
Sbjct: 250 DNRIGDEGARELAACTQLTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLAL 309

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           +A   L  LN+    +  DG +  +   +L  L L  N+I +     L   T+L +L+L+
Sbjct: 310 AANARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLE 369

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
              IG EG   L     L  L+L    +G +G+R LS    L  +++    + D S   L
Sbjct: 370 HSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRTLSANATLVWLSVRRNNLEDASAVSL 429

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           A   +L +L++    I D G  AL +   LT LD+    I ++GA  L     L SL++ 
Sbjct: 430 AAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDVSSNDIRNAGARALAANARLVSLDLR 489

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNC 334
              + ++G + +    +L+ L +S NC
Sbjct: 490 NNRMEESGTRALLANRTLSSLGVSLNC 516


>gi|254411888|ref|ZP_05025664.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
 gi|196181610|gb|EDX76598.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
          Length = 415

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 107/320 (33%), Positives = 170/320 (53%), Gaps = 45/320 (14%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTD--------------------SGIAYLKGLQKLTLLN 113
           SD+ PLS LTNL+SL +  +++TD                    + I  L  L  LT L+
Sbjct: 86  SDLSPLSELTNLESLHLDGNQITDICPLTELTNLKYLTLRRNQITDICPLTELTNLTELS 145

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LEG  +  A ++SL+ L +L +LNL   Q++       +++ +LK L+L  N+ITD  + 
Sbjct: 146 LEGNQI--ADVNSLAELTNLEFLNLENNQIT--TISPLAELQNLKRLHLEDNQITD--IS 199

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L GL NL  L+L+   I D  +  L+   NLK L L   Q+    +  LS LTNL+++ 
Sbjct: 200 SLAGLQNLTWLHLEDNQITD--ISPLSEFTNLKGLFLVLNQI--KDISPLSQLTNLKALE 255

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L F  I D  +  LA L +L  L+L+  QITD  ++ L+ LT LT L L   +I D   +
Sbjct: 256 LKFNQIQD--ISPLAELQNLTWLDLEDNQITD--ISPLSGLTNLTFLSLTYNQIQD--VS 309

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            L    NL+ L++    + D  +  + +L++L  L+L+ N  +TD  +  +SGL  L +L
Sbjct: 310 PLSGLTNLKRLQLNFNQIQD--ISPLAELTNLETLSLNGN-QITD--VSPLSGLQNLNAL 364

Query: 354 NVSNSRITS----AGLRHLK 369
           +++ ++IT     +GL +LK
Sbjct: 365 SLNGNQITDISPLSGLTNLK 384



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/243 (34%), Positives = 121/243 (49%), Gaps = 46/243 (18%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+GL NLT L    N       +  F                      NLKGL  +    
Sbjct: 201 LAGLQNLTWLHLEDNQITDISPLSEF---------------------TNLKGLFLV---- 235

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N I   D+ PLS LTNLK+L++  +++ D  I+ L  LQ LT L+LE   +T   +
Sbjct: 236 ---LNQI--KDISPLSQLTNLKALELKFNQIQD--ISPLAELQNLTWLDLEDNQITD--I 286

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             LS L +L +L+L   Q+ D      S + +LK L L FN+I D  +  L  LTNLE+L
Sbjct: 287 SPLSGLTNLTFLSLTYNQIQD--VSPLSGLTNLKRLQLNFNQIQD--ISPLAELTNLETL 342

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS----FTGIS 240
           +L+   I D  +  L+GL NL  L L+  Q+  + +  LSGLTNL+ ++L+    F+  S
Sbjct: 343 SLNGNQITD--VSPLSGLQNLNALSLNGNQI--TDISPLSGLTNLKVLHLTENPIFSDSS 398

Query: 241 DGS 243
           +G+
Sbjct: 399 EGA 401



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 117/237 (49%), Gaps = 44/237 (18%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIH--GGLVNLKGLMKL 60
           L+ L NL  L    +N IT   + + AGL NL  L LE  + T I       NLKGL  +
Sbjct: 179 LAELQNLKRLHLE-DNQIT--DISSLAGLQNLTWLHLEDNQITDISPLSEFTNLKGLFLV 235

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
                   N I   D+ PLS LTNLK+L++  +++ D  I+ L  LQ LT L+LE   +T
Sbjct: 236 -------LNQI--KDISPLSQLTNLKALELKFNQIQD--ISPLAELQNLTWLDLEDNQIT 284

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
              +  LS L +L +L+L   Q+ D      S + +LK L L FN+I D  +  L  LTN
Sbjct: 285 D--ISPLSGLTNLTFLSLTYNQIQD--VSPLSGLTNLKRLQLNFNQIQD--ISPLAELTN 338

Query: 181 LESLNLDSCGIGD----EGLVNL----------------TGLCNLKCLELSDTQVGS 217
           LE+L+L+   I D     GL NL                +GL NLK L L++  + S
Sbjct: 339 LETLSLNGNQITDVSPLSGLQNLNALSLNGNQITDISPLSGLTNLKVLHLTENPIFS 395



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
           ELS  +   S L  LS LTNLES++L    I+D  +  L  L++LK L L   QITD  +
Sbjct: 77  ELSLNRQEISDLSPLSELTNLESLHLDGNQITD--ICPLTELTNLKYLTLRRNQITD--I 132

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
             LT LT LT L L G +I D  +  L    NL  L +    +T   +  + +L +L  L
Sbjct: 133 CPLTELTNLTELSLEGNQIADVNS--LAELTNLEFLNLENNQIT--TISPLAELQNLKRL 188

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           +L  N  +TD  +  ++GL  L  L++ +++IT   +  L    NL+ L L
Sbjct: 189 HLEDN-QITD--ISSLAGLQNLTWLHLEDNQIT--DISPLSEFTNLKGLFL 234



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 7/116 (6%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           ++S LS LT+L+F        Q +   +GL NL +L L    +I   +  L  L  LE+L
Sbjct: 285 DISPLSGLTNLTFLSLTYNQIQDVSPLSGLTNLKRLQL-NFNQIQ-DISPLAELTNLETL 342

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           ++   N IT  D+ PLSGL NL +L ++ +++TD  I+ L GL  L +L+L   P+
Sbjct: 343 SLN-GNQIT--DVSPLSGLQNLNALSLNGNQITD--ISPLSGLTNLKVLHLTENPI 393


>gi|72385469|ref|XP_846402.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
 gi|9366571|emb|CAB95333.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 1448

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 184/414 (44%), Gaps = 56/414 (13%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           ++A A ++ L KL L  CT I  G+  L  L +L+ L++   N   +S ++ L     + 
Sbjct: 531 VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNES-LRSLCLSQTVV 589

Query: 87  SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 145
           SL +S C K+T+  ++++  L+ L  LNL  C    A  +++  L  L    L+   ++D
Sbjct: 590 SLNLSHCWKMTN--VSHISSLEALNELNLSNCIRINAGWEAIEKLQQLHVAILSNTHITD 647

Query: 146 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTG 201
                FSK  +L  L+L F N++ D  +  L  +T LE LNLDSC    +GL     L  
Sbjct: 648 RDISHFSKCKNLVTLDLSFCNKLLD--VTTLSNITTLEELNLDSCSNIRKGLSVLGELPR 705

Query: 202 LC--NLKCLELSDTQVGS------------------SGLRHLSGLTNLESINLSFTGISD 241
           LC  N+K ++L D+ +GS                   G+  LS L  LE +NL +     
Sbjct: 706 LCVLNIKGVQLEDSVIGSLGNGNSFVRLSLENCKGFGGVTPLSNLVTLEELNLHYCDKVT 765

Query: 242 GSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTGL 277
             +  L  L  L+ L+L   Q+ D                        T ++A+ SLT L
Sbjct: 766 SGMGTLGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSHCKKITSISAIASLTAL 825

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
             L++       SG         LR   +    + D  ++H+ +  SL  LNL+   ++T
Sbjct: 826 EELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENIQHVSECKSLNTLNLAFCKDIT 885

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           D T   +S +T L  LN+        G+  L  L  +R L+++ C +  +D ++
Sbjct: 886 DVT--ALSTITMLEELNLDCCHNIRKGIETLGKLPKVRILSMKECYMGDSDAQQ 937



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 162/374 (43%), Gaps = 26/374 (6%)

Query: 24   AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS-----DMKP 78
            AQ         +LVKL+LER      G +++K L  + +L       + DS     D+  
Sbjct: 935  AQQCSILGNSKSLVKLNLERSM----GFISVKALSNIATLE----ELVLDSVCGIYDVLS 986

Query: 79   LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
             S L  L+ L +  + + D     +   + L  LNL  C      +  LS+L +L  LN+
Sbjct: 987  FSCLPRLRVLNLKYTDINDDVTKNISESKSLQSLNLSHCKWVTD-ISVLSSLSTLEELNV 1045

Query: 139  NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
            N C     G E   K+  L+V  L    IT + +  L     L  L    C    E L +
Sbjct: 1046 NFCNGIRKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLQFFRC----EKLSD 1101

Query: 199  LTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
            +T +  ++ LE   +     G  GL  L  L+ L  ++L     SD S+  +    SL  
Sbjct: 1102 VTVVYEIQSLEELIVRKYSDGLKGLNALGTLSRLRFLHLRNARGSDISVESIGTSKSLVR 1161

Query: 256  LNLDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
            LN++ R+ +TD     L+++T L  L L     T  GA  L     LRSL++    ++D 
Sbjct: 1162 LNIETREELTDA--TPLSNITSLEELSLRDCGDTLEGAWTLGKLPRLRSLDLGLSDISDN 1219

Query: 315  GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
             +  I     +T LNL  N  LTD  +  IS LT L  LN+S     ++G   L  L  L
Sbjct: 1220 TLDEICLSRFITSLNLRYNFKLTD--ISSISNLTALEELNLSGCHRITSGWEALSELPRL 1277

Query: 375  RSLTLESCKVTAND 388
            R L LES  VT  D
Sbjct: 1278 RVLNLESTSVTTRD 1291



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 171/403 (42%), Gaps = 54/403 (13%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           ++  + L NL  L+L         +  +   +KL  L++  CN +TD+   P+S L  L+
Sbjct: 272 IREISRLTNLKCLELNSTNIDDSCVEEISACVKLSKLSVSECNNVTDA--TPISQLAALE 329

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSD 145
            L +S   +T  GI  L  L +L +L+L G PV   CL  L   GSL  LN++ C QL+D
Sbjct: 330 ELNLSNCHIT-KGIGTLGMLLRLRILDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTD 388

Query: 146 ---------------DGCEKFSK-------IGSLKVLNLGFNEIT--------------- 168
                          +GC + ++       +  L++L++    ++               
Sbjct: 389 INPLSNATAIEELNLNGCRRITRGIGVVWALPRLRILHMKDVHLSEPSLDSVGTGGLLVK 448

Query: 169 ---DEC-----LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
              D C     +  L  +  LE LN+  C     G+  L  L  L+ L + +  + S   
Sbjct: 449 VSLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNVKEVHISSLDF 508

Query: 221 RHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
             +    +L  + L SFTG+S+  +  LA + +L+ L+L      D G+  L +L  L  
Sbjct: 509 IGIGASKSLLQLTLESFTGLSN--VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKM 566

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           LDL G    +     L   + + SL +         V HI  L +L  LNLS NC   + 
Sbjct: 567 LDLSGTNTDNESLRSLCLSQTVVSLNL-SHCWKMTNVSHISSLEALNELNLS-NCIRINA 624

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
             E I  L  L    +SN+ IT   + H    KNL +L L  C
Sbjct: 625 GWEAIEKLQQLHVAILSNTHITDRDISHFSKCKNLVTLDLSFC 667



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 175/400 (43%), Gaps = 61/400 (15%)

Query: 36   LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 95
             V+L LE C +  GG+  L  L+ LE LN+ +C+ +T S M  L  L  L+ L +  ++V
Sbjct: 730  FVRLSLENC-KGFGGVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVLDLGRTQV 787

Query: 96   TD------------------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
             D                        + I+ +  L  L  LN++ C    +  +    L 
Sbjct: 788  DDNSLENICTCSSPLVSLNLSHCKKITSISAIASLTALEELNIDNCCNVTSGWNVFGTLH 847

Query: 132  SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG 190
             L    L+  +++D+  +  S+  SL  LNL F  +ITD  +  L  +T LE LNLD C 
Sbjct: 848  QLRVATLSNTRINDENIQHVSECKSLNTLNLAFCKDITD--VTALSTITMLEELNLDCCH 905

Query: 191  IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES---INLSFTGISDGSLRKL 247
               +G+  L  L  ++ L + +  +G S  +  S L N +S   +NL  + +   S++ L
Sbjct: 906  NIRKGIETLGKLPKVRILSMKECYMGDSDAQQCSILGNSKSLVKLNLERS-MGFISVKAL 964

Query: 248  AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
            + +++L+ L LD+      G+  + S + L  L +   + TD                  
Sbjct: 965  SNIATLEELVLDSV----CGIYDVLSFSCLPRLRVLNLKYTD------------------ 1002

Query: 308  GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
               + D   K+I +  SL  LNLS    +TD  + ++S L+ L  LNV+       G   
Sbjct: 1003 ---INDDVTKNISESKSLQSLNLSHCKWVTD--ISVLSSLSTLEELNVNFCNGIRKGWES 1057

Query: 368  LKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVSFRPE 406
            L  L  LR   L    +TA DI  L S + L  L  FR E
Sbjct: 1058 LGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLQFFRCE 1097



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 179/397 (45%), Gaps = 19/397 (4%)

Query: 1    MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
            +T+N+S   +L SL+      +T   +   + L  L +L++  C  I  G  +L G + L
Sbjct: 1007 VTKNISESKSLQSLNLSHCKWVT--DISVLSSLSTLEELNVNFCNGIRKGWESL-GKLPL 1063

Query: 61   ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
              + I     IT  D+  LS    L  LQ   C K++D  + Y   +Q L  L +     
Sbjct: 1064 LRVAILSDTNITAKDIACLSSCKKLVKLQFFRCEKLSDVTVVY--EIQSLEELIVRKYSD 1121

Query: 120  TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 178
                L++L  L  L +L+L   + SD   E      SL  LN+    E+TD     L  +
Sbjct: 1122 GLKGLNALGTLSRLRFLHLRNARGSDISVESIGTSKSLVRLNIETREELTDA--TPLSNI 1179

Query: 179  TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT- 237
            T+LE L+L  CG   EG   L  L  L+ L+L  + +  + L  +     + S+NL +  
Sbjct: 1180 TSLEELSLRDCGDTLEGAWTLGKLPRLRSLDLGLSDISDNTLDEICLSRFITSLNLRYNF 1239

Query: 238  GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLR 296
             ++D S   ++ L++L+ LNL       +G  AL+ L  L  L+L    +T   G  Y+ 
Sbjct: 1240 KLTDIS--SISNLTALEELNLSGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYYIS 1297

Query: 297  NFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
              K+L +L +    +TDA  + +IK L  L +      C+   +    +  L  L  LN+
Sbjct: 1298 RCKSLVTLNLESCDMTDASCLANIKTLEELHI----GECDELTQGFSALFTLPRLRILNL 1353

Query: 356  SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
             +S IT   LR ++P   +  L L  CK   NDI  L
Sbjct: 1354 MDSLITDEDLREIQPPHTIEELNLSYCK-NLNDITPL 1389



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 185/459 (40%), Gaps = 102/459 (22%)

Query: 30  FAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKWCN------------ 69
             G+  L +L+  R    HG LVN+  L        ++L S NI   +            
Sbjct: 201 LQGVSKLKQLEELRIEYPHGKLVNMISLNNLDMLKRLRLRSNNIDNNDARHLFSVGTLEE 260

Query: 70  -CITD----SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 123
             ITD    ++++ +S LTNLK L+++ + + DS +  +    KL+ L++  C  VT A 
Sbjct: 261 LAITDTMQLTNIREISRLTNLKCLELNSTNIDDSCVEEISACVKLSKLSVSECNNVTDA- 319

Query: 124 LDSLSALGSLFYLNLNRCQLS----------------------DDGCEK-FSKIGSLKVL 160
              +S L +L  LNL+ C ++                      +D C K     GSL+ L
Sbjct: 320 -TPISQLAALEELNLSNCHITKGIGTLGMLLRLRILDLSGVPVEDNCLKDLCDCGSLERL 378

Query: 161 NLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ----- 214
           N+ +  ++TD  +  L   T +E LNL+ C     G+  +  L  L+ L + D       
Sbjct: 379 NISYCIQLTD--INPLSNATAIEELNLNGCRRITRGIGVVWALPRLRILHMKDVHLSEPS 436

Query: 215 ---VGSSGL---------------RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
              VG+ GL                 LS +  LE +N+         +  L  L  L+ L
Sbjct: 437 LDSVGTGGLLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVL 496

Query: 257 NLDARQITD--------------------TGLA---ALTSLTGLTHLDLFGARITDSGAA 293
           N+    I+                     TGL+   AL ++  L  L L G    D+G  
Sbjct: 497 NVKEVHISSLDFIGIGASKSLLQLTLESFTGLSNVEALANILTLEKLSLHGCTGIDAGIG 556

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            L N   L+ L++ G    +  ++ +    ++  LNLS    +T+  +  IS L  L  L
Sbjct: 557 CLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTN--VSHISSLEALNEL 614

Query: 354 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           N+SN    +AG   ++ L+ L    L +  +T  DI   
Sbjct: 615 NLSNCIRINAGWEAIEKLQQLHVAILSNTHITDRDISHF 653


>gi|343414367|emb|CCD21012.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
          Length = 1699

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 206/381 (54%), Gaps = 37/381 (9%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            LS LS+L +L F     IT   +   + L +L  LD+  CT I   +  L  L  L +L+
Sbjct: 722  LSKLSSLRTLDFSHCTGIT--NVSPLSELSSLRTLDISHCTGI-TDVSPLSELSSLRTLD 778

Query: 65   IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAA 122
            +  C  IT+  + PLS ++ L+ L +S C+ VTD S ++ + GL+KL L +  G  +T  
Sbjct: 779  LSHCTDITN--VSPLSKISTLQKLDLSHCTGVTDVSPLSKMIGLEKLYLSHCTG--ITD- 833

Query: 123  CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 181
             +  LS L SL  L+L+ C    D     S++ SL  L+L     ITD  +  L  L++L
Sbjct: 834  -VPPLSELSSLRMLDLSHCTGITD-VSPLSELSSLHTLDLSHCTGITD--VSPLSELSSL 889

Query: 182  ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGI 239
             +L+L  C GI D  +  L+ L +L+ L+LS    G + +  LS L++L +++LS  TGI
Sbjct: 890  RTLDLSHCTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGI 946

Query: 240  SDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRN 297
            +D S   L+ LSSL++L+L     ITD  ++ L+ L+ L  LDL     ITD   + L  
Sbjct: 947  TDVS--PLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSK 1000

Query: 298  FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
              +LR+L++    G+TD  V  + +LSSL  L+LS    +TD  +  +S L+ L +L++S
Sbjct: 1001 LSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLS 1056

Query: 357  NSRITSAGLRHLKPLKNLRSL 377
            +      G+  + PL  L SL
Sbjct: 1057 H----CTGITDVSPLSKLSSL 1073



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 205/403 (50%), Gaps = 58/403 (14%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            LS LS+L +L       IT   +   + L N V+LDL  CT I   +  L  L  L +L+
Sbjct: 1205 LSELSSLRTLDLSHCRGIT--DVSPLSELSNFVQLDLSHCTGI-TDVSPLSVLSSLRTLD 1261

Query: 65   IKWCNCITD---------------------SDMKPLSGLTNLKSLQIS-CSKVTDSGIAY 102
            + +C  IT+                     +D+ PLS L++L++L +S C  +  + ++ 
Sbjct: 1262 LSYCTGITNVSPLSNLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSHCRGI--ANVSP 1319

Query: 103  LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162
            L  L  L +LNL  C      +  LS L SL  L+L+ C    D     S++ SL+ L+L
Sbjct: 1320 LSNLSSLRMLNLSHC-TGITDVSPLSVLSSLRTLDLSHCTGITD-VSPLSELSSLRTLDL 1377

Query: 163  GF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
                 ITD  +  L  L++L +L+L  C GI D  +  L+ L +L+ L LS    G + +
Sbjct: 1378 SHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSVLSSLRTLGLSHC-TGITDV 1432

Query: 221  RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITD-TGLAALTSLT-- 275
              LS L++L +++LS  TGI+D S   L+ LSSL++L+L     ITD + L+  +SL   
Sbjct: 1433 SPLSELSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITDVSPLSVFSSLRTL 1490

Query: 276  GLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 334
            GL+H       ITD   + L    NLR+L++    G+TD  V  + +LSSL  L+LS   
Sbjct: 1491 GLSHC----TGITD--VSPLSELSNLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCT 1542

Query: 335  NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
             +TD  +  +S L+ L +L++S+      G+  + PL  L SL
Sbjct: 1543 GITD--VSPLSELSSLRTLDLSH----CTGITDVSPLSKLSSL 1579



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 129/380 (33%), Positives = 199/380 (52%), Gaps = 35/380 (9%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            LS LS+L +L       I    +   + L +L  L+L  CT I   +  L  L  L +L+
Sbjct: 1297 LSELSSLRTLDLSHCRGI--ANVSPLSNLSSLRMLNLSHCTGI-TDVSPLSVLSSLRTLD 1353

Query: 65   IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
            +  C  ITD  + PLS L++L++L +S C+ +TD  ++ L  L  L  L+L  C      
Sbjct: 1354 LSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHC-TGITD 1408

Query: 124  LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE 182
            +  LS L SL  L L+ C    D     S++ SL+ L+L     ITD  +  L  L++L 
Sbjct: 1409 VSPLSVLSSLRTLGLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLR 1465

Query: 183  SLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGIS 240
            +L+L  C GI D  +  L+   +L+ L LS    G + +  LS L+NL +++LS  TGI+
Sbjct: 1466 TLDLSHCTGITD--VSPLSVFSSLRTLGLSHC-TGITDVSPLSELSNLRTLDLSHCTGIT 1522

Query: 241  DGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNF 298
            D S   L+ LSSL++L+L     ITD  ++ L+ L+ L  LDL     ITD   + L   
Sbjct: 1523 DVS--PLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKL 1576

Query: 299  KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
             +LR+L++    G+TD  V  + +LSSL  L+LS    +TD  +  +S L+ L +L++S+
Sbjct: 1577 SSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH 1632

Query: 358  SRITSAGLRHLKPLKNLRSL 377
                  G+  + PL  L SL
Sbjct: 1633 ----CTGITDVSPLSKLSSL 1648



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 201/383 (52%), Gaps = 36/383 (9%)

Query: 4    NLSGLSNLTSLSFRRNNAITA-QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
            N+S LS  +SL     +  T    +   + L +L  LDL  CT    G+ ++  L KL S
Sbjct: 672  NVSPLSKFSSLRMLDISHCTGITNVSPLSKLSSLHTLDLSHCT----GITDVSPLSKLSS 727

Query: 63   L-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            L  + + +C   +++ PLS L++L++L IS C+ +TD  ++ L  L  L  L+L  C   
Sbjct: 728  LRTLDFSHCTGITNVSPLSELSSLRTLDISHCTGITD--VSPLSELSSLRTLDLSHC-TD 784

Query: 121  AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 179
               +  LS + +L  L+L+ C    D     SK+  L+ L L     ITD  +  L  L+
Sbjct: 785  ITNVSPLSKISTLQKLDLSHCTGVTD-VSPLSKMIGLEKLYLSHCTGITD--VPPLSELS 841

Query: 180  NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-T 237
            +L  L+L  C GI D  +  L+ L +L  L+LS    G + +  LS L++L +++LS  T
Sbjct: 842  SLRMLDLSHCTGITD--VSPLSELSSLHTLDLSHC-TGITDVSPLSELSSLRTLDLSHCT 898

Query: 238  GISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL 295
            GI+D S   L+ LSSL++L+L     ITD  ++ L+ L+ L  LDL     ITD   + L
Sbjct: 899  GITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPL 952

Query: 296  RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
                +LR+L++    G+TD  V  + +LSSL  L+LS    +TD  +  +S L+ L +L+
Sbjct: 953  SKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLD 1008

Query: 355  VSNSRITSAGLRHLKPLKNLRSL 377
            +S+      G+  + PL  L SL
Sbjct: 1009 LSH----CTGITDVSPLSELSSL 1027



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 135/424 (31%), Positives = 206/424 (48%), Gaps = 77/424 (18%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            LS LS+L +L       IT   +   + L +L  LDL  CT I   +  L  L  L +L+
Sbjct: 975  LSELSSLRTLDLSHCTGIT--DVSPLSKLSSLRTLDLSHCTGI-TDVSPLSELSSLRTLD 1031

Query: 65   IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
            +  C  ITD  + PLS L++L++L +S C+ +TD  ++ L  L  L  L+L  C      
Sbjct: 1032 LSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHC-TGITD 1086

Query: 124  LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE 182
            +  LS L SL  L+L+ C    D     S++ SL+ L+L     ITD  +  L  L++L 
Sbjct: 1087 VSPLSELSSLRTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLR 1143

Query: 183  SLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGIS 240
            +L+L  C GI D  +  L+ L +L+ L+LS    G + +  LS L++L ++ LS  TGI+
Sbjct: 1144 TLDLSHCTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSKLSSLCTLELSHCTGIT 1200

Query: 241  DGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNF 298
            D S   L+ LSSL++L+L   R ITD  ++ L+ L+    LDL     ITD   + L   
Sbjct: 1201 DVS--PLSELSSLRTLDLSHCRGITD--VSPLSELSNFVQLDLSHCTGITD--VSPLSVL 1254

Query: 299  KNLRSLEI--CGG----------------------GLTD--------------------- 313
             +LR+L++  C G                      G+TD                     
Sbjct: 1255 SSLRTLDLSYCTGITNVSPLSNLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSHCRGI 1314

Query: 314  AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 373
            A V  + +LSSL +LNLS    +TD  +  +S L+ L +L++S+      G+  + PL  
Sbjct: 1315 ANVSPLSNLSSLRMLNLSHCTGITD--VSPLSVLSSLRTLDLSH----CTGITDVSPLSE 1368

Query: 374  LRSL 377
            L SL
Sbjct: 1369 LSSL 1372



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 197/383 (51%), Gaps = 41/383 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL- 63
           LS LS+L +L       IT   +   +   +L  LDL  CT    G+ N+  L K  SL 
Sbjct: 630 LSELSSLRTLDLSHCTGIT--DVSPLSKFSSLHTLDLSHCT----GITNVSPLSKFSSLR 683

Query: 64  --NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             +I  C  IT+  + PLS L++L +L +S C+ +TD  ++ L  L  L  L+   C   
Sbjct: 684 MLDISHCTGITN--VSPLSKLSSLHTLDLSHCTGITD--VSPLSKLSSLRTLDFSHC-TG 738

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 179
              +  LS L SL  L+++ C    D     S++ SL+ L+L    +IT+  +  L  ++
Sbjct: 739 ITNVSPLSELSSLRTLDISHCTGITD-VSPLSELSSLRTLDLSHCTDITN--VSPLSKIS 795

Query: 180 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-T 237
            L+ L+L  C G+ D  +  L+ +  L+ L LS    G + +  LS L++L  ++LS  T
Sbjct: 796 TLQKLDLSHCTGVTD--VSPLSKMIGLEKLYLSHC-TGITDVPPLSELSSLRMLDLSHCT 852

Query: 238 GISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL 295
           GI+D S   L+ LSSL +L+L     ITD  ++ L+ L+ L  LDL     ITD   + L
Sbjct: 853 GITDVS--PLSELSSLHTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPL 906

Query: 296 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
               +LR+L++    G+TD  V  + +LSSL  L+LS    +TD  +  +S L+ L +L+
Sbjct: 907 SELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLD 962

Query: 355 VSNSRITSAGLRHLKPLKNLRSL 377
           +S+      G+  + PL  L SL
Sbjct: 963 LSH----CTGITDVSPLSELSSL 981



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 134/430 (31%), Positives = 207/430 (48%), Gaps = 76/430 (17%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            LS LS+L +L       IT   +   + L +L  LDL  CT I   +  L  L  L +L+
Sbjct: 1113 LSELSSLRTLDLSHCTGIT--DVSPLSELSSLRTLDLSHCTGI-TDVSPLSELSSLRTLD 1169

Query: 65   IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
            +  C  ITD  + PLS L++L +L++S C+ +TD  ++ L  L  L  L+L  C      
Sbjct: 1170 LSHCTGITD--VSPLSKLSSLCTLELSHCTGITD--VSPLSELSSLRTLDLSHCRGITD- 1224

Query: 124  LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF------------------- 164
            +  LS L +   L+L+ C    D     S + SL+ L+L +                   
Sbjct: 1225 VSPLSELSNFVQLDLSHCTGITD-VSPLSVLSSLRTLDLSYCTGITNVSPLSNLSSLRSL 1283

Query: 165  -----NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGS 217
                   ITD  +  L  L++L +L+L  C     G+ N++ L NL  L + +     G 
Sbjct: 1284 DLSHCTGITD--VSPLSELSSLRTLDLSHC----RGIANVSPLSNLSSLRMLNLSHCTGI 1337

Query: 218  SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLT 275
            + +  LS L++L +++LS  TGI+D S   L+ LSSL++L+L     ITD  ++ L+ L+
Sbjct: 1338 TDVSPLSVLSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSKLS 1393

Query: 276  GLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQN 333
             L  LDL     ITD   + L    +LR+L +    G+TD  V  + +LSSL  L+LS  
Sbjct: 1394 SLRTLDLSHCTGITD--VSPLSVLSSLRTLGLSHCTGITD--VSPLSELSSLRTLDLSHC 1449

Query: 334  CNLTD----------KTLEL--ISGLTGLVSLNVSNSRITSAGLRH---------LKPLK 372
              +TD          +TL+L   +G+T +  L+V +S + + GL H         L  L 
Sbjct: 1450 TGITDVSPLSELSSLRTLDLSHCTGITDVSPLSVFSS-LRTLGLSHCTGITDVSPLSELS 1508

Query: 373  NLRSLTLESC 382
            NLR+L L  C
Sbjct: 1509 NLRTLDLSHC 1518



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 130/413 (31%), Positives = 203/413 (49%), Gaps = 65/413 (15%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            LS LS+L +L       IT   +   + L +L  LDL  CT I   +  L  L  L +L+
Sbjct: 1044 LSELSSLRTLDLSHCTGIT--DVSPLSKLSSLRTLDLSHCTGI-TDVSPLSELSSLRTLD 1100

Query: 65   IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
            +  C  ITD  + PLS L++L++L +S C+ +TD  ++ L  L  L  L+L  C      
Sbjct: 1101 LSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHC-TGITD 1155

Query: 124  LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE 182
            +  LS L SL  L+L+ C    D     SK+ SL  L L     ITD  +  L  L++L 
Sbjct: 1156 VSPLSELSSLRTLDLSHCTGITD-VSPLSKLSSLCTLELSHCTGITD--VSPLSELSSLR 1212

Query: 183  SLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF----- 236
            +L+L  C GI D  +  L+ L N   L+LS    G + +  LS L++L +++LS+     
Sbjct: 1213 TLDLSHCRGITD--VSPLSELSNFVQLDLSHC-TGITDVSPLSVLSSLRTLDLSYCTGIT 1269

Query: 237  -------------------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
                               TGI+D S   L+ LSSL++L+L   +    G+A ++ L+ L
Sbjct: 1270 NVSPLSNLSSLRSLDLSHCTGITDVS--PLSELSSLRTLDLSHCR----GIANVSPLSNL 1323

Query: 278  THLDLFGAR----ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ 332
            + L +        ITD   + L    +LR+L++    G+TD  V  + +LSSL  L+LS 
Sbjct: 1324 SSLRMLNLSHCTGITD--VSPLSVLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH 1379

Query: 333  NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP---LKNLRSLTLESC 382
               +TD  +  +S L+ L +L++S+      G+  + P   L +LR+L L  C
Sbjct: 1380 CTGITD--VSPLSKLSSLRTLDLSH----CTGITDVSPLSVLSSLRTLGLSHC 1426



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 194/381 (50%), Gaps = 37/381 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS ++ L  L       IT   +   + L +  KLDL  CT    G+ ++  L KL SL+
Sbjct: 538 LSKMNGLQKLYLSHCTGIT--DVPPLSALSSFEKLDLSHCT----GITDVSPLSKLSSLH 591

Query: 65  -IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
            +   +C   +++ PL   ++L+ L IS C+ +T+  ++ L  L  L  L+L  C     
Sbjct: 592 TLDLSHCTGITNVSPLLKFSSLRMLDISHCTGITN--VSPLSELSSLRTLDLSHC-TGIT 648

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 181
            +  LS   SL  L+L+ C          SK  SL++L++     IT+  +  L  L++L
Sbjct: 649 DVSPLSKFSSLHTLDLSHCT-GITNVSPLSKFSSLRMLDISHCTGITN--VSPLSKLSSL 705

Query: 182 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGI 239
            +L+L  C GI D  +  L+ L +L+ L+ S    G + +  LS L++L ++++S  TGI
Sbjct: 706 HTLDLSHCTGITD--VSPLSKLSSLRTLDFSHC-TGITNVSPLSELSSLRTLDISHCTGI 762

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRN 297
           +D S   L+ LSSL++L+L     TD T ++ L+ ++ L  LDL     +TD   + L  
Sbjct: 763 TDVS--PLSELSSLRTLDL--SHCTDITNVSPLSKISTLQKLDLSHCTGVTD--VSPLSK 816

Query: 298 FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
              L  L +    G+TD  V  + +LSSL +L+LS    +TD  +  +S L+ L +L++S
Sbjct: 817 MIGLEKLYLSHCTGITD--VPPLSELSSLRMLDLSHCTGITD--VSPLSELSSLHTLDLS 872

Query: 357 NSRITSAGLRHLKPLKNLRSL 377
           +      G+  + PL  L SL
Sbjct: 873 H----CTGITDVSPLSELSSL 889



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 100/283 (35%), Positives = 150/283 (53%), Gaps = 23/283 (8%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            LS LS+L +L       IT   +   + L +L  LDL  CT I   +  L     L +L 
Sbjct: 1435 LSELSSLRTLDLSHCTGIT--DVSPLSELSSLRTLDLSHCTGI-TDVSPLSVFSSLRTLG 1491

Query: 65   IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
            +  C  ITD  + PLS L+NL++L +S C+ +TD  ++ L  L  L  L+L  C      
Sbjct: 1492 LSHCTGITD--VSPLSELSNLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHC-TGITD 1546

Query: 124  LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE 182
            +  LS L SL  L+L+ C    D     SK+ SL+ L+L     ITD  +  L  L++L 
Sbjct: 1547 VSPLSELSSLRTLDLSHCTGITD-VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLR 1603

Query: 183  SLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGIS 240
            +L+L  C GI D  +  L+ L +L+ L+LS    G + +  LS L++L +++LS  TGI+
Sbjct: 1604 TLDLSHCTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSKLSSLRTLDLSHCTGIT 1660

Query: 241  DGSLRKLAGLSSLKSLN-LDARQITDTGLAALTSLTGLTHLDL 282
            D S   L+ LSSL++L+ L    ITD  ++ L+ L+ L  LD 
Sbjct: 1661 DVS--PLSELSSLRTLDLLHCTGITD--VSPLSELSSLGTLDF 1699



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 125/406 (30%), Positives = 200/406 (49%), Gaps = 64/406 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL- 63
           LS LS+   L       IT   +   + L +L  LDL  CT    G+ N+  L+K  SL 
Sbjct: 561 LSALSSFEKLDLSHCTGIT--DVSPLSKLSSLHTLDLSHCT----GITNVSPLLKFSSLR 614

Query: 64  --NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC--- 117
             +I  C  IT+  + PLS L++L++L +S C+ +TD  ++ L     L  L+L  C   
Sbjct: 615 MLDISHCTGITN--VSPLSELSSLRTLDLSHCTGITD--VSPLSKFSSLHTLDLSHCTGI 670

Query: 118 ----PVT----------AAC-----LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
               P++          + C     +  LS L SL  L+L+ C    D     SK+ SL+
Sbjct: 671 TNVSPLSKFSSLRMLDISHCTGITNVSPLSKLSSLHTLDLSHCTGITD-VSPLSKLSSLR 729

Query: 159 VLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQV 215
            L+      IT+  +  L  L++L +L++  C GI D  +  L+ L +L+ L+LS  T +
Sbjct: 730 TLDFSHCTGITN--VSPLSELSSLRTLDISHCTGITD--VSPLSELSSLRTLDLSHCTDI 785

Query: 216 GSSGLRHLSGLTNLESINLSF-TGISDGS-LRKLAGLSSLKSLNLDARQITDTGLAALTS 273
             + +  LS ++ L+ ++LS  TG++D S L K+ GL  L   +     ITD  +  L+ 
Sbjct: 786 --TNVSPLSKISTLQKLDLSHCTGVTDVSPLSKMIGLEKLYLSH--CTGITD--VPPLSE 839

Query: 274 LTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 331
           L+ L  LDL     ITD   + L    +L +L++    G+TD  V  + +LSSL  L+LS
Sbjct: 840 LSSLRMLDLSHCTGITD--VSPLSELSSLHTLDLSHCTGITD--VSPLSELSSLRTLDLS 895

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
               +TD  +  +S L+ L +L++S+      G+  + PL  L SL
Sbjct: 896 HCTGITD--VSPLSELSSLRTLDLSH----CTGITDVSPLSELSSL 935



 Score = 38.5 bits (88), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 180/405 (44%), Gaps = 76/405 (18%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           ++EN   + + TSL+  R+  I   G+ +   L  + +L L +       L  +     L
Sbjct: 142 LSENCQPMESHTSLTVGRDCFIPCLGVVSEEVLAGVSRLTLNKVELTDRDLWPIHNFSNL 201

Query: 61  ESLNIKWC-------------------NCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI 100
           ++L+I+ C                   NC    D + +SG++ L+ + IS C K     I
Sbjct: 202 KALSIEECTGRICLGTRMPHGNPPTQENC---DDTEGVSGISCLEEITISNCMK-----I 253

Query: 101 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160
             +KGL  L            AC      +  L ++N N   +SDD     S+   ++  
Sbjct: 254 KEIKGLNTL------------AC------IRRLRFINSN---ISDDCVANISENKHIR-- 290

Query: 161 NLGFNEITDECLVHLKGLTN---LESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVG 216
            L F +  +  +  L+ L N   LESL + +C I  E  +N L  L  L+ L LS   + 
Sbjct: 291 ELEFQDCAN--ITSLRPLANSELLESLVISNC-INLESEINVLAALNRLRELRLSRLDIN 347

Query: 217 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSL 274
              LR L G   L +++LS  TGI+D SL  L+ LS L +L L     ITD  ++ L++L
Sbjct: 348 DVTLRDLDGNECLRTLDLSHCTGITDVSL--LSKLSGLHTLGLSHCTGITD--VSPLSNL 403

Query: 275 TGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ 332
           +GL  L L     ITD   + L    +LR+L +    G+TD  V  +   SSL  L +S 
Sbjct: 404 SGLRMLGLSHCTGITD--VSPLSELSSLRTLGLSHCTGITD--VSPLSVFSSLRTLGISH 459

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
              +TD  +  +S + GL  L +S+      G+  + PL  L S 
Sbjct: 460 CTGITD--VSPLSKMNGLQKLYLSH----CTGITDVPPLSALSSF 498


>gi|344169683|emb|CCA82044.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
           [blood disease bacterium R229]
          Length = 590

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 157/335 (46%), Gaps = 30/335 (8%)

Query: 71  ITDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           +TD D+K L    +LK+L +S C +++T  GIA+L  L  L  LN+    + A     L+
Sbjct: 132 VTDDDLKGLPA--SLKALDLSDCRAQITSEGIAHLSKL-PLVRLNVSHNRIDAEGARLLA 188

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
           A+ +L  L+++   +  DG +  +   +L +LN+G N I D     L   T L SLN  +
Sbjct: 189 AMPTLTELDISHNDIRADGAQALADSATLTLLNVGNNRIGDRGAQALAANTKLTSLNASA 248

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
            GIG  G+  L     L  L+LS T +     + L+  T L S+N+  + + D   R LA
Sbjct: 249 NGIGSAGVQALAANATLAALDLSCTPIDEESAQALARNTTLTSLNVRLSRLGDAGARALA 308

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG------------------------ 284
             ++L SLN+   +I   G  AL + T LT LD+ G                        
Sbjct: 309 ATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVIHR 368

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
            RI  +GA  L N   L SL+I   GL   G +   D  +LT L ++ N  + D+  + +
Sbjct: 369 NRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRIATNM-IGDEGAKWL 427

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           +  T L SL++  +RI   G + L     L SL +
Sbjct: 428 ARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNI 462



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 169/382 (44%), Gaps = 6/382 (1%)

Query: 7   GLSNLTSLSFRR----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           G+++L+ L   R    +N I A+G +  A +  L +LD+        G   L     L  
Sbjct: 160 GIAHLSKLPLVRLNVSHNRIDAEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTL 219

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+   N I D   + L+  T L SL  S + +  +G+  L     L  L+L   P+   
Sbjct: 220 LNVG-NNRIGDRGAQALAANTKLTSLNASANGIGSAGVQALAANATLAALDLSCTPIDEE 278

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
              +L+   +L  LN+   +L D G    +   +L  LN+  NEI  E    L   T+L 
Sbjct: 279 SAQALARNTTLTSLNVRLSRLGDAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLT 338

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SL++    +G +G   L     L  L +   ++  +G + L+  T L S+++S  G+   
Sbjct: 339 SLDIGGNKVGVDGAQALATSMTLTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVW 398

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
             R      +L SL +    I D G   L   T LT LD+   RI ++GA  L     L 
Sbjct: 399 GARAFVDNETLTSLRIATNMIGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLT 458

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SL I G  +   GV  +   ++L  LN+S+N        +L    T L SL V+ + I +
Sbjct: 459 SLNISGNAIGMMGVLRLARNTTLAALNVSRNQIGVAGAQDLARNTT-LRSLVVNYNEIGN 517

Query: 363 AGLRHLKPLKNLRSLTLESCKV 384
            G R L   K L SL++  C++
Sbjct: 518 EGARALAGNKTLVSLSVVDCRI 539



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 93/201 (46%), Gaps = 2/201 (0%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 70
           LTSL   RN  I   G +A A    L  LD+        G         L SL I   N 
Sbjct: 361 LTSLVIHRNR-IEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRIA-TNM 418

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I D   K L+  T L SL I  +++ ++G   L G  KLT LN+ G  +    +  L+  
Sbjct: 419 IGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARN 478

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            +L  LN++R Q+   G +  ++  +L+ L + +NEI +E    L G   L SL++  C 
Sbjct: 479 TTLAALNVSRNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLVSLSVVDCR 538

Query: 191 IGDEGLVNLTGLCNLKCLELS 211
           IGDEG   L     L  L++S
Sbjct: 539 IGDEGAHALAANTTLALLDVS 559



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 131/280 (46%), Gaps = 7/280 (2%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L SLN++    + D+  + L+  T L SL +S +++   G   L     LT L++ G  V
Sbjct: 289 LTSLNVRLSR-LGDAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKV 347

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVHLK 176
                 +L+   +L  L ++R ++   G +  +   ++ SL + + G         V  +
Sbjct: 348 GVDGAQALATSMTLTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNE 407

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LT   SL + +  IGDEG   L     L  L++ + ++G +G + L+G T L S+N+S 
Sbjct: 408 TLT---SLRIATNMIGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISG 464

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I    + +LA  ++L +LN+   QI   G   L   T L  L +    I + GA  L 
Sbjct: 465 NAIGMMGVLRLARNTTLAALNVSRNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALA 524

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
             K L SL +    + D G   +   ++L LL++S N ++
Sbjct: 525 GNKTLVSLSVVDCRIGDEGAHALAANTTLALLDVSLNRHI 564


>gi|290993851|ref|XP_002679546.1| LRR_RI domain-containing protein [Naegleria gruberi]
 gi|284093163|gb|EFC46802.1| LRR_RI domain-containing protein [Naegleria gruberi]
          Length = 385

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 149/307 (48%), Gaps = 15/307 (4%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-----LEGCPVTAACLDSLSALGSLFYL 136
           L  L  L IS +++   G   +  L++LT L      LEG  +       +S L  L  L
Sbjct: 86  LQQLTRLVISWNRIGIEGAKAISQLKQLTELEINQIGLEGTKI-------ISELNQLTSL 138

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           N+   ++   G +  S++  L  L++G N++  E + +++ L  L +L++ +  IG  G 
Sbjct: 139 NIANNKMGKQGAKYISEMKQLTKLDIGTNQLGVEGVQYIRKLDKLTALSVFNNVIGFRGA 198

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
           + L  +  L  L +S   +G  G + +S L NL  +NLSF  IS    + ++ L  L  L
Sbjct: 199 MLLRKMTQLTELNISTNAIGDVGAKFVSDLPNLAILNLSFNSISYVGAQFISKLPKLTEL 258

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 315
           N++   + + G+  ++ +  LT+L L   RI + G  ++    K LR L++C   + DAG
Sbjct: 259 NMNQNDLGNEGVKFISGIISLTNLSLQTTRIDEHGVKFISEKLKQLRILKLCENNIGDAG 318

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNL 374
            K +  L  LT L+L  N N+  +  + IS +  L  L +  + I   G + + + LK L
Sbjct: 319 AKFLITLEKLTDLSLYSN-NIGYEGAKAISTMKALTHLRIHGNPIGIEGAKEIYEQLKEL 377

Query: 375 RSLTLES 381
           +   L+ 
Sbjct: 378 KEYCLDQ 384



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 117/260 (45%), Gaps = 4/260 (1%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           T+ +S L+ LTSL+   NN +  QG K  + +  L KLD+        G+  ++ L KL 
Sbjct: 126 TKIISELNQLTSLNIA-NNKMGKQGAKYISEMKQLTKLDIGTNQLGVEGVQYIRKLDKLT 184

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +L++ + N I       L  +T L  L IS + + D G  ++  L  L +LNL    ++ 
Sbjct: 185 ALSV-FNNVIGFRGAMLLRKMTQLTELNISTNAIGDVGAKFVSDLPNLAILNLSFNSISY 243

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTN 180
                +S L  L  LN+N+  L ++G +  S I SL  L+L    I +  +  + + L  
Sbjct: 244 VGAQFISKLPKLTELNMNQNDLGNEGVKFISGIISLTNLSLQTTRIDEHGVKFISEKLKQ 303

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  L L    IGD G   L  L  L  L L    +G  G + +S +  L  + +    I 
Sbjct: 304 LRILKLCENNIGDAGAKFLITLEKLTDLSLYSNNIGYEGAKAISTMKALTHLRIHGNPIG 363

Query: 241 -DGSLRKLAGLSSLKSLNLD 259
            +G+      L  LK   LD
Sbjct: 364 IEGAKEIYEQLKELKEYCLD 383


>gi|290983152|ref|XP_002674293.1| predicted protein [Naegleria gruberi]
 gi|284087882|gb|EFC41549.1| predicted protein [Naegleria gruberi]
          Length = 338

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 118/223 (52%), Gaps = 2/223 (0%)

Query: 63  LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           +N+K+   + DS  KP  ++ +  L SL IS +++ D G+ ++  +++L  L +    + 
Sbjct: 112 VNVKFSKRLFDSIEKPTFITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIG 171

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
              + S+  +  L  L +   Q+ D+G +  S++  L  L++  N+  DE +  +  +  
Sbjct: 172 DEGVKSIIEMKRLTSLGIGGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQ 231

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L SL + +  IGDEG  +++ +  L  L +S+ ++G  G   +S L  L S+++ +  I 
Sbjct: 232 LTSLTIYNNRIGDEGAKSISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIG 291

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
           D   + +  +  LKSL++   QI D G+  ++ +T LT LD+F
Sbjct: 292 DKEAKFICEMKQLKSLDIGGNQIGDEGVKFISEMTRLTSLDIF 334



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 108/204 (52%)

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           ++ +  L  L+++  ++ D+G +  S++  L  L +  N I DE +  +  +  L SL +
Sbjct: 130 ITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIGDEGVKSIIEMKRLTSLGI 189

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
               IGDEG  +++ +  L  L++++ Q G  G++ +  +  L S+ +    I D   + 
Sbjct: 190 GGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNRIGDEGAKS 249

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           ++ +  L SLN+   +I D G   ++ L  LT LD+   RI D  A ++   K L+SL+I
Sbjct: 250 ISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIGDKEAKFICEMKQLKSLDI 309

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNL 330
            G  + D GVK I +++ LT L++
Sbjct: 310 GGNQIGDEGVKFISEMTRLTSLDI 333



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 4/213 (1%)

Query: 146 DGCEKFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           D  EK + I  +K L   ++  N I DE +  +  +  L SL + + GIGDEG+ ++  +
Sbjct: 122 DSIEKPTFITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIGDEGVKSIIEM 181

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
             L  L +   Q+G  G + +S +  L S++++     D  ++ +  +  L SL +   +
Sbjct: 182 KRLTSLGIGGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNR 241

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
           I D G  +++ +  LT L++   RI D GA ++   K L SL+IC   + D   K I ++
Sbjct: 242 IGDEGAKSISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIGDKEAKFICEM 301

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
             L  L++  N  + D+ ++ IS +T L SL++
Sbjct: 302 KQLKSLDIGGN-QIGDEGVKFISEMTRLTSLDI 333


>gi|344278047|ref|XP_003410808.1| PREDICTED: F-box/LRR-repeat protein 14 [Loxodonta africana]
          Length = 514

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 183/344 (53%), Gaps = 50/344 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYHLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 397
           +   +RIT  GL  +  L  L+ L L   ++T  D ++  SR+ 
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMT--DSEKTSSREF 404



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 86  IQGMANIESLNLSGCYHLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 146 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 382

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 163/345 (47%), Gaps = 60/345 (17%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLESL 63
           G+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +L
Sbjct: 69  GIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYHLTDNGLGHAFVQEIGSLRAL 122

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGCP 118
           N+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C 
Sbjct: 123 NLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCR 180

Query: 119 VTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NE 166
             +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F   
Sbjct: 181 HLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG 240

Query: 167 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHL 223
           I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L ++
Sbjct: 241 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 300

Query: 224 S-GLTNLESINLSFTGISDGSL----RKLAGLSSL----------KSLNLDAR------- 261
           + GL  L+S++L    ISD  +    R++ GL +L          K L L A        
Sbjct: 301 AQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTG 360

Query: 262 -------QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
                  +IT  GL  +T L  L  L+L   ++TDS     R F+
Sbjct: 361 IDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKTSSREFQ 405


>gi|395845616|ref|XP_003795523.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Otolemur
           garnettii]
          Length = 401

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 113/339 (33%), Positives = 182/339 (53%), Gaps = 49/339 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           +   +RIT  GL  +  L  L+ L L   ++T ++ KRL
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE-KRL 400



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 146 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 382

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 118/237 (49%), Gaps = 26/237 (10%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 167 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 222

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 223 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 282

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +   ++  L+ LN+G    
Sbjct: 283 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 342

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S  R
Sbjct: 343 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKR 399


>gi|320169700|gb|EFW46599.1| protein tyrosine kinase [Capsaspora owczarzaki ATCC 30864]
          Length = 1026

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 142/329 (43%), Gaps = 2/329 (0%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           T   +GL++LT ++ + NN IT      F GL ++ + DL              GL  L 
Sbjct: 80  TNAFTGLTSLTQVTLQNNN-ITNIVATTFTGLSSVTQTDLSYNKLTSLSANAFTGLTALA 138

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            L++   N IT       S LT L  L ++ + +     +   GL  L  LNL G   TA
Sbjct: 139 QLDLS-MNQITSIHATAFSDLTALTQLSLTNNIIRTIPSSAFTGLTALNTLNLGGNLFTA 197

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
              ++ + L +L YL+L  C ++      F+ + +L  L L  N+I +       GLT L
Sbjct: 198 IPANAFTGLSALNYLSLFACLITVISANAFTGLTALTFLTLQSNQILNIPANAFAGLTAL 257

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           + L L S  I        T L  L  L+LS   + S      +GL+ L  ++LS+  I+ 
Sbjct: 258 QFLYLSSAQITSLSANAFTDLSALTQLDLSYNMITSLSANTFTGLSALTRLDLSYNMITS 317

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
            S     GLS+L  L L   QIT     A   LT LT L LF  +IT   A        L
Sbjct: 318 LSANTFTGLSALTQLYLFENQITSIPADAFAGLTALTQLFLFENQITSIPADAFAGLTAL 377

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             LE+    +T       + L++LT L L
Sbjct: 378 TQLELSHTRITSISANAFRGLTALTALYL 406



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 152/336 (45%), Gaps = 8/336 (2%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113
             GL  L+ L + + N +T    +  +GLT L  L +S +++T    +   GL  LT L+
Sbjct: 11  FAGLTALQYLELSY-NQLTGISAQAFTGLTALNYLDLSNNRITKIPGSLFTGLTMLTTLS 69

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           L+   +T+   ++ + L SL  + L    +++     F+ + S+   +L +N++T     
Sbjct: 70  LQFNHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQTDLSYNKLTSLSAN 129

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
              GLT L  L+L    I        + L  L  L L++  + +      +GLT L ++N
Sbjct: 130 AFTGLTALAQLDLSMNQITSIHATAFSDLTALTQLSLTNNIIRTIPSSAFTGLTALNTLN 189

Query: 234 LS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           L    FT I   +     GLS+L  L+L A  IT     A T LT LT L L   +I + 
Sbjct: 190 LGGNLFTAIPANAF---TGLSALNYLSLFACLITVISANAFTGLTALTFLTLQSNQILNI 246

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
            A        L+ L +    +T        DLS+LT L+LS N  +T  +    +GL+ L
Sbjct: 247 PANAFAGLTALQFLYLSSAQITSLSANAFTDLSALTQLDLSYNM-ITSLSANTFTGLSAL 305

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
             L++S + ITS        L  L  L L   ++T+
Sbjct: 306 TRLDLSYNMITSLSANTFTGLSALTQLYLFENQITS 341



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 111/269 (41%), Gaps = 25/269 (9%)

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           QL       F+ + +L+ L L +N++T        GLT L  L+L +  I        TG
Sbjct: 2   QLISIPANAFAGLTALQYLELSYNQLTGISAQAFTGLTALNYLDLSNNRITKIPGSLFTG 61

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-----------SFTGIS-----DGSLR 245
           L  L  L L    + S      +GLT+L  + L           +FTG+S     D S  
Sbjct: 62  LTMLTTLSLQFNHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQTDLSYN 121

Query: 246 KL--------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
           KL         GL++L  L+L   QIT     A + LT LT L L    I    ++    
Sbjct: 122 KLTSLSANAFTGLTALAQLDLSMNQITSIHATAFSDLTALTQLSLTNNIIRTIPSSAFTG 181

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
              L +L + G   T         LS+L  L+L   C +T  +    +GLT L  L + +
Sbjct: 182 LTALNTLNLGGNLFTAIPANAFTGLSALNYLSLFA-CLITVISANAFTGLTALTFLTLQS 240

Query: 358 SRITSAGLRHLKPLKNLRSLTLESCKVTA 386
           ++I +        L  L+ L L S ++T+
Sbjct: 241 NQILNIPANAFAGLTALQFLYLSSAQITS 269



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 6/172 (3%)

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
            +GLT L+ + LS+  ++  S +   GL++L  L+L   +IT    +  T LT LT L L
Sbjct: 11  FAGLTALQYLELSYNQLTGISAQAFTGLTALNYLDLSNNRITKIPGSLFTGLTMLTTLSL 70

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
               IT           +L  + +    +T+        LSS+T  +LS N  LT  +  
Sbjct: 71  QFNHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQTDLSYN-KLTSLSAN 129

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
             +GLT L  L++S ++ITS    H     +L +LT     +T N I+ + S
Sbjct: 130 AFTGLTALAQLDLSMNQITSI---HATAFSDLTALT--QLSLTNNIIRTIPS 176


>gi|83592173|ref|YP_425925.1| hypothetical protein Rru_A0837 [Rhodospirillum rubrum ATCC 11170]
 gi|386348881|ref|YP_006047129.1| hypothetical protein F11_04310 [Rhodospirillum rubrum F11]
 gi|83575087|gb|ABC21638.1| Leucine-rich repeat [Rhodospirillum rubrum ATCC 11170]
 gi|346717317|gb|AEO47332.1| leucine-rich repeat-containing protein [Rhodospirillum rubrum F11]
          Length = 1085

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 164/316 (51%), Gaps = 28/316 (8%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           +D+ PL+GL NL+ L +S + VTD  +  L G++ L  L L    VT   L  L+ L +L
Sbjct: 85  TDLTPLTGLENLQGLFLSYTAVTD--LTPLTGIKSLQSLILSETQVTD--LTPLAGLKNL 140

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             +NL+  Q++D      + + +L+ L L +  +TD  L  L GL NL+ L L    + D
Sbjct: 141 QSINLSATQITD--LAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQHLILLGTRVID 196

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSS 252
             L  L GL +L+ L+LS T+V  + +  L GL +L+S++L  T ++D   L  L  L S
Sbjct: 197 --LTPLAGLKSLQSLDLSGTRV--TNIAPLVGLKSLQSLDLRRTRVTDIAPLVGLKSLKS 252

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGL 311
           L+SLNL    +TD  LA L  L  L +L L    +TD +  A L N +N+          
Sbjct: 253 LQSLNLSRTPVTD--LAPLAGLENLQNLTLSYTTVTDLAPLAGLENLQNI---------- 300

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL-NVSNSRITSAGLRHLKP 370
            D G   + DL+ L  L   QN +L    +  ++ L GL +L N++ S  T   L  L  
Sbjct: 301 -DLGGTEVIDLAPLAGLENLQNIDLGGTEVIDLAPLAGLENLQNLTLSYTTVTDLAPLAG 359

Query: 371 LKNLRSLTLESCKVTA 386
           L+NL+S+    C++T+
Sbjct: 360 LENLQSIDCSGCRITS 375



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 104/319 (32%), Positives = 171/319 (53%), Gaps = 27/319 (8%)

Query: 46  RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 105
           R+   L  L GL  L+ L + +      +D+ PL+G+ +L+SL +S ++VTD  +  L G
Sbjct: 82  RLVTDLTPLTGLENLQGLFLSYTAV---TDLTPLTGIKSLQSLILSETQVTD--LTPLAG 136

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           L+ L  +NL    +T   L  L+ L +L  L L+   ++D      + + +L+ L L   
Sbjct: 137 LKNLQSINLSATQITD--LAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQHLILLGT 192

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLS 224
            + D  L  L GL +L+SL+L    + +  +  L GL +L+ L+L  T+V   + L  L 
Sbjct: 193 RVID--LTPLAGLKSLQSLDLSGTRVTN--IAPLVGLKSLQSLDLRRTRVTDIAPLVGLK 248

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
            L +L+S+NLS T ++D  L  LAGL +L++L L    +TD  LA L  L  L ++DL G
Sbjct: 249 SLKSLQSLNLSRTPVTD--LAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQNIDLGG 304

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
             + D   A L   +NL+++++ G  + D A +  +++L +LTL        +TD  L  
Sbjct: 305 TEVID--LAPLAGLENLQNIDLGGTEVIDLAPLAGLENLQNLTL----SYTTVTD--LAP 356

Query: 344 ISGLTGLVSLNVSNSRITS 362
           ++GL  L S++ S  RITS
Sbjct: 357 LAGLENLQSIDCSGCRITS 375


>gi|300694035|ref|YP_003750008.1| type III effector protein [Ralstonia solanacearum PSI07]
 gi|299076072|emb|CBJ35382.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
           [Ralstonia solanacearum PSI07]
          Length = 590

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 157/335 (46%), Gaps = 30/335 (8%)

Query: 71  ITDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           +TD D+K L    +LK+L +S C +++T  GIA+L  L  L  LN+    + A     L+
Sbjct: 132 VTDDDLKGLPA--SLKALDLSDCRAQITSEGIAHLSKL-PLVRLNVSHNRIDAEGARLLA 188

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
           A+ +L  L+++   +  DG +  +   +L +LN+G N I D     L   T L SLN  +
Sbjct: 189 AMPTLTELDISHNDIRADGAQALADSATLTLLNVGNNRIGDRGAQALAANTKLTSLNASA 248

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
            GIG  G+  L     L  L+LS T +     + L+  T L S+N+  + + D   R LA
Sbjct: 249 NGIGSAGVQALAANATLAALDLSCTSIDEESAQALARNTTLTSLNVRLSRLGDAGARALA 308

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG------------------------ 284
             ++L SLN+   +I   G  AL + T LT LD+ G                        
Sbjct: 309 ATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVIHR 368

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
            RI  +GA  L N   L SL+I   GL   G +   D  +LT L ++ N  + D+  + +
Sbjct: 369 NRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRIATNM-IGDEGAKWL 427

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           +  T L SL++  +RI   G + L     L SL +
Sbjct: 428 ARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNI 462



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 168/382 (43%), Gaps = 6/382 (1%)

Query: 7   GLSNLTSLSFRR----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           G+++L+ L   R    +N I A+G +  A +  L +LD+        G   L     L  
Sbjct: 160 GIAHLSKLPLVRLNVSHNRIDAEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTL 219

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+   N I D   + L+  T L SL  S + +  +G+  L     L  L+L    +   
Sbjct: 220 LNVG-NNRIGDRGAQALAANTKLTSLNASANGIGSAGVQALAANATLAALDLSCTSIDEE 278

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
              +L+   +L  LN+   +L D G    +   +L  LN+  NEI  E    L   T+L 
Sbjct: 279 SAQALARNTTLTSLNVRLSRLGDAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLT 338

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SL++    +G +G   L     L  L +   ++  +G + L+  T L S+++S  G+   
Sbjct: 339 SLDIGGNKVGVDGAQALATSMTLTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVW 398

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
             R      +L SL +    I D G   L   T LT LD+   RI ++GA  L     L 
Sbjct: 399 GARAFVDNETLTSLRIATNMIGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLT 458

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SL I G  +   GV  +   ++L  LN+S+N        +L    T L SL V+ + I +
Sbjct: 459 SLNISGNAIGMMGVLRLARNTTLAALNVSRNQIGVAGAQDLARNTT-LRSLVVNYNEIGN 517

Query: 363 AGLRHLKPLKNLRSLTLESCKV 384
            G R L   K L SL++  C++
Sbjct: 518 EGARALAGNKTLASLSVVDCRI 539



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 93/201 (46%), Gaps = 2/201 (0%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 70
           LTSL   RN  I   G +A A    L  LD+        G         L SL I   N 
Sbjct: 361 LTSLVIHRNR-IEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRIA-TNM 418

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I D   K L+  T L SL I  +++ ++G   L G  KLT LN+ G  +    +  L+  
Sbjct: 419 IGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARN 478

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            +L  LN++R Q+   G +  ++  +L+ L + +NEI +E    L G   L SL++  C 
Sbjct: 479 TTLAALNVSRNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLASLSVVDCR 538

Query: 191 IGDEGLVNLTGLCNLKCLELS 211
           IGDEG   L     L  L++S
Sbjct: 539 IGDEGAHALAANTTLALLDVS 559



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 131/280 (46%), Gaps = 7/280 (2%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L SLN++    + D+  + L+  T L SL +S +++   G   L     LT L++ G  V
Sbjct: 289 LTSLNVRLSR-LGDAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKV 347

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVHLK 176
                 +L+   +L  L ++R ++   G +  +   ++ SL + + G         V  +
Sbjct: 348 GVDGAQALATSMTLTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNE 407

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LT   SL + +  IGDEG   L     L  L++ + ++G +G + L+G T L S+N+S 
Sbjct: 408 TLT---SLRIATNMIGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISG 464

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I    + +LA  ++L +LN+   QI   G   L   T L  L +    I + GA  L 
Sbjct: 465 NAIGMMGVLRLARNTTLAALNVSRNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALA 524

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
             K L SL +    + D G   +   ++L LL++S N ++
Sbjct: 525 GNKTLASLSVVDCRIGDEGAHALAANTTLALLDVSLNRHI 564


>gi|290984031|ref|XP_002674731.1| predicted protein [Naegleria gruberi]
 gi|284088323|gb|EFC41987.1| predicted protein [Naegleria gruberi]
          Length = 356

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 123/237 (51%), Gaps = 1/237 (0%)

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           + ++G +  SK+  L  L +  NEI DE   ++  L  L SL++    IG EG   ++ L
Sbjct: 110 IGNEGAKYISKLKQLTHLYILNNEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISEL 169

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
             L  L++S   +G+ G +H++ +  L  +N+S   I     + +  L  L  L +    
Sbjct: 170 KQLTNLDISVNHIGAEGAQHIAEMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNN 229

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
           I   G   ++ +  LT L++    I   GA Y+   K L  L+I    +   GV++I ++
Sbjct: 230 IDVEGAKYISEMKQLTDLNISYNNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEM 289

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           + LT+L+ S N N+ D+  + IS +  L +L++SN+ I++ G++ ++ +K+L  L +
Sbjct: 290 NQLTILSASHN-NIGDEGAKYISEMKQLTNLDISNNSISNEGVKCIEEMKHLTVLNI 345



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 114/238 (47%)

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 154
           + + G  Y+  L++LT L +    +       +S L  L  L+++   +  +G +  S++
Sbjct: 110 IGNEGAKYISKLKQLTHLYILNNEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISEL 169

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
             L  L++  N I  E   H+  +  L  LN+ +  IG EG   +  L  L CL + +  
Sbjct: 170 KQLTNLDISVNHIGAEGAQHIAEMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNN 229

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           +   G +++S +  L  +N+S+  I     + ++ L  L  L++   QI   G+  +  +
Sbjct: 230 IDVEGAKYISEMKQLTDLNISYNNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEM 289

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
             LT L      I D GA Y+   K L +L+I    +++ GVK I+++  LT+LN+ Q
Sbjct: 290 NQLTILSASHNNIGDEGAKYISEMKQLTNLDISNNSISNEGVKCIEEMKHLTVLNIRQ 347



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 109/229 (47%), Gaps = 4/229 (1%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113
           LK L  L  LN    N I D   K +S L  L SL IS + +   G  Y+  L++LT L+
Sbjct: 121 LKQLTHLYILN----NEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISELKQLTNLD 176

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           +    + A     ++ +  L  LN++   +  +G +   K+  L  L +  N I  E   
Sbjct: 177 ISVNHIGAEGAQHIAEMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNNIDVEGAK 236

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
           ++  +  L  LN+    I  EG   ++ L  L  L++S  Q+G+ G+++++ +  L  ++
Sbjct: 237 YISEMKQLTDLNISYNNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTILS 296

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
            S   I D   + ++ +  L +L++    I++ G+  +  +  LT L++
Sbjct: 297 ASHNNIGDEGAKYISEMKQLTNLDISNNSISNEGVKCIEEMKHLTVLNI 345



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 26/254 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S L  LT L +  NN I  +G K  + L  LV LD+                       
Sbjct: 118 ISKLKQLTHL-YILNNEIDDEGAKYISELNQLVSLDISY--------------------- 155

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N I     K +S L  L +L IS + +   G  ++  + +LT+LN+    +     
Sbjct: 156 ----NNIGVEGAKYISELKQLTNLDISVNHIGAEGAQHIAEMNQLTILNISTNNIGYEGA 211

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             +  L  L  L +    +  +G +  S++  L  LN+ +N I  E   ++  L  L  L
Sbjct: 212 KYIGKLKQLTCLTIFNNNIDVEGAKYISEMKQLTDLNISYNNIDVEGAKYISELKQLTDL 271

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           ++    IG +G+  +  +  L  L  S   +G  G +++S +  L ++++S   IS+  +
Sbjct: 272 DISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYISEMKQLTNLDISNNSISNEGV 331

Query: 245 RKLAGLSSLKSLNL 258
           + +  +  L  LN+
Sbjct: 332 KCIEEMKHLTVLNI 345


>gi|46447568|ref|YP_008933.1| hypothetical protein pc1934 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401209|emb|CAF24658.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 261

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/244 (39%), Positives = 142/244 (58%), Gaps = 12/244 (4%)

Query: 109 LTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE 166
           L  LNL GC  +T A L  L+ L +L +LNL+RC +L+D G    + + +L+ L L + E
Sbjct: 3   LKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYCE 62

Query: 167 -ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 223
            +TD  L HL  LT L+ L L +C  + D GLV+LT L +L+ L+LS+   +   GL HL
Sbjct: 63  NLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLVHL 122

Query: 224 SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD--ARQITDTGLAALTSLTGLTHL 280
           + LT L+ + LS    ++D  L  L  L++L++L L    + +T  GLA L  LT L  L
Sbjct: 123 TPLTALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTALQTL 182

Query: 281 DL-FGARITDSGAAYLRNFKNLRSL--EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
           DL +   + D+G A+L     L++L  + C   LTDAG+ H+K L++L  L+LS   +LT
Sbjct: 183 DLSYCKNLKDAGLAHLTPLTALQTLGLKWCSK-LTDAGLAHLKPLAALQHLDLSHCRSLT 241

Query: 338 DKTL 341
           D  L
Sbjct: 242 DAGL 245



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 149/281 (53%), Gaps = 30/281 (10%)

Query: 34  INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 91
           + L  L+L  C+++ + GL +L  L  L+ LN+  C+ +TD+ +  L+ LT L+ L +S 
Sbjct: 1   MALKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSY 60

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 149
           C  +TD+G+A+L  L  L  L L  C  +T   L  L+ L SL +L+L+ C  L+DDG  
Sbjct: 61  CENLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLV 120

Query: 150 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
             + + +L+ L L G + +TD  L HL  LT L++L L           NLTG       
Sbjct: 121 HLTPLTALQHLVLSGCDNLTDAGLAHLTPLTALQTLGL------RRWCQNLTG------- 167

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDT 266
                     GL HL+ LT L++++LS+   + D  L  L  L++L++L L    ++TD 
Sbjct: 168 ---------DGLAHLAPLTALQTLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDA 218

Query: 267 GLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI 306
           GLA L  L  L HLDL   R +TD+G A  +      +LEI
Sbjct: 219 GLAHLKPLAALQHLDLSHCRSLTDAGLARFKILATSLNLEI 259



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/239 (38%), Positives = 130/239 (54%), Gaps = 13/239 (5%)

Query: 156 SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD- 212
           +LK LNL G +++T+  L HL  L  L+ LNL  C  + D GL +LT L  L+ L LS  
Sbjct: 2   ALKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYC 61

Query: 213 ---TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGL 268
              T  G + L  L+ L +L   N     ++D  L  L  L+SL+ L+L +   +TD GL
Sbjct: 62  ENLTDAGLAHLALLTALQDLALANCKH--LTDVGLVHLTPLTSLQHLDLSNCMNLTDDGL 119

Query: 269 AALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSL 325
             LT LT L HL L G   +TD+G A+L     L++L +      LT  G+ H+  L++L
Sbjct: 120 VHLTPLTALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTAL 179

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
             L+LS   NL D  L  ++ LT L +L +   S++T AGL HLKPL  L+ L L  C+
Sbjct: 180 QTLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAHLKPLAALQHLDLSHCR 238



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 5/115 (4%)

Query: 4   NLSGLSNLTSLSFRRN-NAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLE 61
           +L+ L+ L +L  RR    +T  G+   A L  L  LDL  C  +   GL +L  L  L+
Sbjct: 146 HLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTALQTLDLSYCKNLKDAGLAHLTPLTALQ 205

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 115
           +L +KWC+ +TD+ +  L  L  L+ L +S C  +TD+G+A  K L   T LNLE
Sbjct: 206 TLGLKWCSKLTDAGLAHLKPLAALQHLDLSHCRSLTDAGLARFKILA--TSLNLE 258



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 3/116 (2%)

Query: 276 GLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQN 333
            L +L+L G +++T++G A+L   K L+ L +     LTDAG+ H+  L++L  L LS  
Sbjct: 2   ALKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYC 61

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 388
            NLTD  L  ++ LT L  L ++N + +T  GL HL PL +L+ L L +C    +D
Sbjct: 62  ENLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDD 117


>gi|410963525|ref|XP_003988315.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Felis catus]
          Length = 411

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 77  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 114

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 115 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 174

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 175 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 234

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 235 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 293

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 294 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 353

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 354 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 391



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 77  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 136

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 137 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 193

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 194 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 253

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 254 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 313

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 314 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 373

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 374 LKVLNL 379



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 77  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 135

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 136 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 191

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 192 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 250

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 251 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 310

Query: 387 NDIKRL 392
           + I R+
Sbjct: 311 DGINRM 316



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 18/230 (7%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C ++    L ++ +G
Sbjct: 158 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRG 217

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+ L++
Sbjct: 218 LTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDV 277

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNEITDE 170
             C  V    L  ++  L  L  L+L  C +SDDG  +   ++  L+ LN+G    ITD+
Sbjct: 278 SFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDK 337

Query: 171 CLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
            L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 338 GLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 387


>gi|345791735|ref|XP_543882.2| PREDICTED: F-box/LRR-repeat protein 14 [Canis lupus familiaris]
          Length = 420

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 146 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 382

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200

Query: 276 --GLTHLDLFGA-RITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query: 387 NDIKRL 392
           + I R+
Sbjct: 320 DGINRM 325



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 18/230 (7%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C ++    L ++ +G
Sbjct: 167 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRG 226

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+ L++
Sbjct: 227 LTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDV 286

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNEITDE 170
             C  V    L  ++  L  L  L+L  C +SDDG  +   ++  L+ LN+G    ITD+
Sbjct: 287 SFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDK 346

Query: 171 CLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
            L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 347 GLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396


>gi|290981600|ref|XP_002673518.1| predicted protein [Naegleria gruberi]
 gi|284087102|gb|EFC40774.1| predicted protein [Naegleria gruberi]
          Length = 399

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 49/350 (14%)

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
           C  +  + ++    L NLK L I  S + D    YL   + L  LN   C +    L   
Sbjct: 34  CRSVGVAILENFPYLENLKELIIDGSYIGDENAIYLSKFKCLKRLNACSCNLGPKSLQYF 93

Query: 128 SALGSLFYLNLNRCQ-----------------------LSDDGCEKFSKIGSLKVLNLGF 164
           S L SL  L L   +                       LS D  E+ S+I +L  LNL  
Sbjct: 94  SNLNSLEELTLPYNKVSGGLYHLKKLKGLKKLDLSKNVLSMDDIEQLSEISNLNHLNLNG 153

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
            ++  +C+ ++  L  L +L L++  I + GL N++ +  L  L+L     GS  LRHL 
Sbjct: 154 VDLGGKCMEYISKLP-LITLELEASNIDEIGLGNISQITTLSKLKLFGNNFGSESLRHLV 212

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
            L+NL+ ++L++  I D  +  L+ L SL+ L+L    I + G+  ++ L  L+ L+L  
Sbjct: 213 KLSNLKYLSLAYNKIDDEGVEYLSLLQSLEYLSLSYNNIGNDGVQFISKLENLSQLELIR 272

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
            RI + G  ++   KNL  L +        G   I+++ +L L  + Q            
Sbjct: 273 NRIDERGVQFISKMKNLTKLNL--------GENPIRNIGALYLSKMKQ------------ 312

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
                L  L++  ++I    + HL  +KNL+ L +E   ++   ++ L+ 
Sbjct: 313 -----LKGLDLDGTKIDDFSIEHLCLMKNLQYLNIERTNLSETKVETLKE 357


>gi|126340111|ref|XP_001366661.1| PREDICTED: f-box/LRR-repeat protein 14-like [Monodelphis domestica]
          Length = 400

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 146 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 382

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query: 387 NDIKRL 392
           + I R+
Sbjct: 320 DGINRM 325



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 167 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 222

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 223 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 282

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +  + +  L+ LN+G    
Sbjct: 283 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 342

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 343 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTES 396


>gi|410684076|ref|YP_006060083.1| leucine-rich-repeat type III effector protein (GALA1-like)
           [Ralstonia solanacearum CMR15]
 gi|299068565|emb|CBJ39793.1| leucine-rich-repeat type III effector protein (GALA1-like)
           [Ralstonia solanacearum CMR15]
          Length = 555

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 155 GSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 212
            SLK L+L     +IT   + HL  L  L  LN+ +  IGDEG   L     L  L ++ 
Sbjct: 154 ASLKALDLSRCGRQITAAGIAHLSELP-LAELNVRNNWIGDEGARLLAAHPTLTTLNVAS 212

Query: 213 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 272
             +G +G + L+  T LES+++SF  I    ++ LA  ++LK+LN+ +  I D G  AL 
Sbjct: 213 NGIGDAGAQALAANTRLESLDISFNEIGSDGVQALADNATLKTLNISSNDIGDAGALALA 272

Query: 273 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
             T LT L+    RI+D+GA  L N  +L SL+I   G  DAGV+ I   + L  L++S+
Sbjct: 273 VNTTLTELNTSCNRISDAGAQALANSDSLTSLDISDNGFGDAGVQAIAANTRLRRLDISR 332

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
           N  L++  +  ++  T L  L +++  I +AG + L     L SL
Sbjct: 333 N-RLSEAGVLAVAANTTLTKLCIADCEIGTAGAQALAANTRLVSL 376



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 172/390 (44%), Gaps = 28/390 (7%)

Query: 36  LVKLDLERCTR--IHGGLVNLKGLMKLESLNIK--W---------------------CNC 70
           L  LDL RC R     G+ +L  L  L  LN++  W                      N 
Sbjct: 156 LKALDLSRCGRQITAAGIAHLSEL-PLAELNVRNNWIGDEGARLLAAHPTLTTLNVASNG 214

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I D+  + L+  T L+SL IS +++   G+  L     L  LN+    +  A   +L+  
Sbjct: 215 IGDAGAQALAANTRLESLDISFNEIGSDGVQALADNATLKTLNISSNDIGDAGALALAVN 274

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            +L  LN +  ++SD G +  +   SL  L++  N   D  +  +   T L  L++    
Sbjct: 275 TTLTELNTSCNRISDAGAQALANSDSLTSLDISDNGFGDAGVQAIAANTRLRRLDISRNR 334

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           + + G++ +     L  L ++D ++G++G + L+  T L S++    GI     + LA  
Sbjct: 335 LSEAGVLAVAANTTLTKLCIADCEIGTAGAQALAANTRLVSLDAGHNGIGTEGAQALARH 394

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
           ++LK LNL+   I D G  A      L  L+L G ++TDSG   L     LR+L +    
Sbjct: 395 ATLKQLNLEKNPIGDAGAVAFADNATLRSLNLKGCKVTDSGLRVLATNATLRTLNVSDNR 454

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           +T  G K     S+LT L++S N  + D+    ++  T L  LN+  + +T  G+  L  
Sbjct: 455 ITAEGAKATAANSTLTSLDVSHN-GIEDEGALALAANTVLNVLNICYNALTVKGVTALAA 513

Query: 371 LKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
              L  L +     +A  I+R     +P L
Sbjct: 514 STTLAVLDIRENGYSAT-IERALQAAVPQL 542



 Score = 44.3 bits (103), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 25/172 (14%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           +N I  +G +A A    L +L+LE+      G V       L SLN+K C  +TDS ++ 
Sbjct: 380 HNGIGTEGAQALARHATLKQLNLEKNPIGDAGAVAFADNATLRSLNLKGCK-VTDSGLRV 438

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L+    L++L +S +++T                  EG   TAA         +L  L++
Sbjct: 439 LATNATLRTLNVSDNRIT-----------------AEGAKATAAN-------STLTSLDV 474

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
           +   + D+G    +    L VLN+ +N +T + +  L   T L  L++   G
Sbjct: 475 SHNGIEDEGALALAANTVLNVLNICYNALTVKGVTALAASTTLAVLDIRENG 526



 Score = 38.1 bits (87), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 18/125 (14%)

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSS 324
           G AAL SLT          R TD   A L    +L++L++  CG  +T AG+ H+ +L  
Sbjct: 131 GYAALESLT-------LEGRFTDEDLATLP--ASLKALDLSRCGRQITAAGIAHLSEL-P 180

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           L  LN+  N  + D+   L++    L +LNV+++ I  AG + L    N R   LES  +
Sbjct: 181 LAELNVRNNW-IGDEGARLLAAHPTLTTLNVASNGIGDAGAQALA--ANTR---LESLDI 234

Query: 385 TANDI 389
           + N+I
Sbjct: 235 SFNEI 239


>gi|46447197|ref|YP_008562.1| hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400838|emb|CAF24287.1| hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 380

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 8/227 (3%)

Query: 5   LSGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 62
           L+  SN +  L+F    ++T   + A     NL +L L+ C  +   GL +L  L+ L+ 
Sbjct: 154 LNHFSNEIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQH 213

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           LN+  C  +TD+ +  L+ L  L+ L ++ C  +TD+G+A+L  L  L  L+L GCP +T
Sbjct: 214 LNLAGCRKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLT 273

Query: 121 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 178
              L  L  L +L +LNL+ C +L+D G      + +L  LNL G +++TD  LVHL  L
Sbjct: 274 GVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPL 333

Query: 179 TNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 223
             L+ L+L +C  + D GL +L  L  L+ L L     +  +GL H+
Sbjct: 334 VTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDAGLAHI 380



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 13/232 (5%)

Query: 150 KFSKI---GSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGL 202
           KF KI    S ++  L F+E   +TD  L+ LK   NL+ L+L  C +  D GL +L  L
Sbjct: 149 KFEKILNHFSNEIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASL 208

Query: 203 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA 260
             L+ L L+   ++  +GL HL+ L  L+ ++L+    ++D  L  L  L +L+ L+L+ 
Sbjct: 209 VALQHLNLAGCRKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNG 268

Query: 261 -RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 317
              +T  GLA L  L  L HL+L +  ++TD+G A+L+    L  L + G   LTDAG+ 
Sbjct: 269 CPNLTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLV 328

Query: 318 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 368
           H+  L +L  L+L+   NLTD  L  +  L  L  LN+     +T AGL H+
Sbjct: 329 HLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDAGLAHI 380



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 109/210 (51%), Gaps = 7/210 (3%)

Query: 181 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FT 237
           +E LN  +   + D  L+ L    NLK L L D   +  +GL HL+ L  L+ +NL+   
Sbjct: 161 IEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGCR 220

Query: 238 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 295
            ++D  L  L  L  L+ L+L     +TD GLA LT L  L HLDL G   +T  G A+L
Sbjct: 221 KLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHL 280

Query: 296 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           +    L+ L +     LTDAG+ H+K L +L  LNL+    LTD  L  +  L  L  L+
Sbjct: 281 KPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHLD 340

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
           ++  S +T  GL HLKPL  L+ L L  C 
Sbjct: 341 LTACSNLTDVGLAHLKPLVALQHLNLGWCP 370



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 118/213 (55%), Gaps = 7/213 (3%)

Query: 42  ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI 100
           E+ +     L+ LK    L+ L+++ C  +TD+ +  L+ L  L+ L ++ C K+TD+G+
Sbjct: 168 EKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGCRKLTDAGL 227

Query: 101 AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLK 158
           A+L  L  L  L+L GC  +T A L  L+ L +L +L+LN C  L+  G      + +L+
Sbjct: 228 AHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHLKPLVALQ 287

Query: 159 VLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQV 215
            LNL + +++TD  L HLK L  L  LNL  C  + D GLV+L  L  L+ L+L+  + +
Sbjct: 288 HLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHLDLTACSNL 347

Query: 216 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 247
              GL HL  L  L+ +NL +   ++D  L  +
Sbjct: 348 TDVGLAHLKPLVALQHLNLGWCPNLTDAGLAHI 380



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 7/168 (4%)

Query: 220 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGL 277
           L H S    +E +N S    ++D  L  L    +LK L+L D   +TD GLA L SL  L
Sbjct: 154 LNHFSN--EIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVAL 211

Query: 278 THLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            HL+L G R +TD+G A+L     L+ L + G   LTDAG+ H+  L +L  L+L+   N
Sbjct: 212 QHLNLAGCRKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPN 271

Query: 336 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 382
           LT   L  +  L  L  LN+S   ++T AGL HLKPL  L  L L  C
Sbjct: 272 LTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGC 319



 Score = 38.9 bits (89), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLES 62
           +L  L  L  L+    + +T  G+     L+ L  LDL  C+ +   GL +LK L+ L+ 
Sbjct: 304 HLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQH 363

Query: 63  LNIKWCNCITDS 74
           LN+ WC  +TD+
Sbjct: 364 LNLGWCPNLTDA 375


>gi|431930507|ref|YP_007243553.1| TIR domain-containing protein [Thioflavicoccus mobilis 8321]
 gi|431828810|gb|AGA89923.1| TIR domain-containing protein [Thioflavicoccus mobilis 8321]
          Length = 1283

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 173/371 (46%), Gaps = 53/371 (14%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------- 97
           L NL  L  L +L    C+    +D+ PL+GLTNL++L   C+ VTD             
Sbjct: 108 LSNLGFLAGLTALQYLKCSSTQVADLTPLAGLTNLQALDCGCTPVTDLTPLAGLTNLRSL 167

Query: 98  ----SGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 152
               + +A L+ L  LT L    C  T  A L  L+ L  L +L+    +++D   E  +
Sbjct: 168 DCAYTPVAGLEPLADLTTLKSLDCRHTRVADLAPLAGLTELQFLDCGDTRVAD--LEPVA 225

Query: 153 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELS 211
            + +L+ L+ G   + D  L  L GL NL++L+     + D   L +LT L +L C    
Sbjct: 226 SLANLQSLDCGGTRVVD--LTPLAGLANLQALDCGFTQVADLAPLASLTNLQSLDCRSAP 283

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
            T +G      L+ L NL+S+   FT ++D  L  LAGL++L SLN     + D  LA L
Sbjct: 284 VTDLGP-----LASLGNLQSLICQFTPVAD--LAPLAGLTNLLSLNCWNTPVID--LAPL 334

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSL----- 325
            S+  L  L+     + D   A L    NLRSLE  G  +TD A +  + +L SL     
Sbjct: 335 ASIGNLQSLNCSSTPVAD--LASLAGLTNLRSLECAGSPVTDLAPLAGLTNLRSLDCEGT 392

Query: 326 ------TLLNL----SQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
                  L+NL    S +C  T  T L  ++GLT L SL    + +  A L  L  L NL
Sbjct: 393 PVADLGPLINLTNLRSLDCGFTRVTDLAPLAGLTNLQSLICRQTPV--ADLAPLAALNNL 450

Query: 375 RSLTLESCKVT 385
           +S    + ++T
Sbjct: 451 QSFACGNTRIT 461


>gi|301756605|ref|XP_002914145.1| PREDICTED: f-box/LRR-repeat protein 14-like [Ailuropoda
           melanoleuca]
          Length = 420

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 146 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 382

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query: 387 NDIKRL 392
           + I R+
Sbjct: 320 DGINRM 325



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 167 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 222

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 223 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 282

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +   ++  L+ LN+G    
Sbjct: 283 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 342

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 343 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396


>gi|357134265|ref|XP_003568738.1| PREDICTED: uncharacterized protein LOC100844673 [Brachypodium
           distachyon]
          Length = 547

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 146/316 (46%), Gaps = 40/316 (12%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           L +L+ L +LE L+I W + IT+     L   T L  L +S + VT   +  L  LQ L 
Sbjct: 131 LRSLQVLTRLEHLDI-WGSEITNEGASVLKAFTRLSFLNVSWTHVTR--LPPLPNLQHLN 187

Query: 111 LLN----------------LEGCPVTAACLDSLSAL------GSLFYLNLNRCQLSDDGC 148
           + N                LE   V AA   ++  +       SL YL+++ C LS+   
Sbjct: 188 MSNCTIHSIRDGDSEVNVPLEKFTVCAASFGNIFEVFSSIQGSSLLYLDMSGCSLSN--L 245

Query: 149 EKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTG-LCNLK 206
             F K+  ++ L+L F+ ITD  + H+  +  NL  L+L + GI  +    L G + NL 
Sbjct: 246 HIFEKMKHIEHLDLSFSRITDAAIQHVANIGMNLRHLSLKNTGITSQAPCILAGTVPNLS 305

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-----------GSLRKLAGLSSLKS 255
            L L+ T++  S L ++S + +L  I+LS T I              S+  L  L  L+S
Sbjct: 306 SLSLAYTEIDDSALAYISMMPSLRVIDLSHTSIKGFTCVEVNSEKIPSMPPLEHLMYLES 365

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           LNL+   ++D  +  L S   + +L L    ++D     L +  NL  L  CG  L+D+G
Sbjct: 366 LNLEDTALSDEVIPPLASFRAIKYLYLKSDFLSDPALHALSSASNLTHLGFCGNILSDSG 425

Query: 316 VKHIKDLSSLTLLNLS 331
           +      + L +L+LS
Sbjct: 426 LLQFVPPAKLRVLDLS 441



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 154/343 (44%), Gaps = 44/343 (12%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           +TD  ++ L  LT L+ L I  S++T+ G + LK   +L+ LN+    VT      L  L
Sbjct: 126 MTDKTLRSLQVLTRLEHLDIWGSEITNEGASVLKAFTRLSFLNVSWTHVT-----RLPPL 180

Query: 131 GSLFYLNLNRCQLSD--DG-------CEKFSK-IGSLKVLNLGFNEITDECLVHL----- 175
            +L +LN++ C +    DG        EKF+    S   +   F+ I    L++L     
Sbjct: 181 PNLQHLNMSNCTIHSIRDGDSEVNVPLEKFTVCAASFGNIFEVFSSIQGSSLLYLDMSGC 240

Query: 176 --------KGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSG- 225
                   + + ++E L+L    I D  + ++  +  NL+ L L +T + S     L+G 
Sbjct: 241 SLSNLHIFEKMKHIEHLDLSFSRITDAAIQHVANIGMNLRHLSLKNTGITSQAPCILAGT 300

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           + NL S++L++T I D +L  ++ + SL+ ++L           + TS+ G T +++   
Sbjct: 301 VPNLSSLSLAYTEIDDSALAYISMMPSLRVIDL-----------SHTSIKGFTCVEVNSE 349

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           +I       L +   L SL +    L+D  +  +    ++  L L  +  L+D  L  +S
Sbjct: 350 KIPSMPP--LEHLMYLESLNLEDTALSDEVIPPLASFRAIKYLYLKSDF-LSDPALHALS 406

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
             + L  L    + ++ +GL    P   LR L L  C +   D
Sbjct: 407 SASNLTHLGFCGNILSDSGLLQFVPPAKLRVLDLSGCWILTGD 449



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 136/318 (42%), Gaps = 58/318 (18%)

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           + L+ LGS  YL +   +L+D  C+  +      + +LG   +TD+ L  L+ LT LE L
Sbjct: 88  EWLAYLGSFRYLRV--LKLAD--CKNVNNSAVWALSDLGGIHMTDKTLRSLQVLTRLEHL 143

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISD 241
           ++    I +EG   L     L  L +S T V       L  L NL+ +N+S      I D
Sbjct: 144 DIWGSEITNEGASVLKAFTRLSFLNVSWTHVTR-----LPPLPNLQHLNMSNCTIHSIRD 198

Query: 242 G------SLRKLA-----------GLSSLKS---LNLDARQITDTGLAALTSLTGLTHLD 281
           G       L K               SS++    L LD    + + L     +  + HLD
Sbjct: 199 GDSEVNVPLEKFTVCAASFGNIFEVFSSIQGSSLLYLDMSGCSLSNLHIFEKMKHIEHLD 258

Query: 282 LFGARITDSGAAYLRNF-KNLRSLEICGGGLTD------AGVKHIKDLSSLTLLNLSQNC 334
           L  +RITD+   ++ N   NLR L +   G+T       AG   + +LSSL+L       
Sbjct: 259 LSFSRITDAAIQHVANIGMNLRHLSLKNTGITSQAPCILAGT--VPNLSSLSL----AYT 312

Query: 335 NLTDKTLELISGLTGLVSLNVSNS--------RITSAGLRHLKPLKNLRSLTLESCKVTA 386
            + D  L  IS +  L  +++S++         + S  +  + PL++L  L   + + TA
Sbjct: 313 EIDDSALAYISMMPSLRVIDLSHTSIKGFTCVEVNSEKIPSMPPLEHLMYLESLNLEDTA 372

Query: 387 NDIKRLQSRDLPNLVSFR 404
                L    +P L SFR
Sbjct: 373 -----LSDEVIPPLASFR 385


>gi|290977411|ref|XP_002671431.1| leucine rich repeat protein [Naegleria gruberi]
 gi|284085000|gb|EFC38687.1| leucine rich repeat protein [Naegleria gruberi]
          Length = 389

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 146/324 (45%), Gaps = 29/324 (8%)

Query: 33  LINLVKLDLERC----TRIHGGLVNLKGLMKLESLNIKWC-------------------- 68
           L N+ K+ L  C      I G +  LK   +L S++I +C                    
Sbjct: 68  LHNISKIKLRACDDYLESIKGLMEILKSYDQLRSVDIGYCYIGNSQTISEMKQLTSLDID 127

Query: 69  -NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE--GCPVTAACLD 125
            NC+ +  +K +  L NL  L I C+++   G   + G++++  LN+   G  V  A L 
Sbjct: 128 NNCVDEQGVKLIGELHNLTRLNIGCNRIGLEGFKSISGMKQMRDLNVSSSGAGVEGAKL- 186

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
            +S L  L   N++  ++ ++G +   ++  L +L++  N+I  E    +  L  L  L 
Sbjct: 187 -MSQLKHLTKFNISGNEIGEEGAKSIGELKWLTMLDICSNQIGAEGAKSISQLERLTKLY 245

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           +   GIG EG  +++ L +L  L +   Q+GS G + +S L  L  + +    I      
Sbjct: 246 ISGNGIGPEGAQSISQLSHLTTLFIGGNQIGSKGSKSISQLKRLTILYIDSNEIGSEGAN 305

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
            ++ LS+LK L +   QI D G  +++ L  LT L++    I D GA  +   K L  L 
Sbjct: 306 SISQLSNLKELYISDNQIGDEGAKSISQLKHLTTLEILRNEIGDQGAKSISQLKQLTRLH 365

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLN 329
           I    + D G K +  +   +L+N
Sbjct: 366 ISCNRIGDQGAKLLNRMKINSLIN 389



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 135/274 (49%), Gaps = 4/274 (1%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKL 60
           ++ +S +  LTSL    NN +  QG+K    L NL +L++  C RI   G  ++ G+ ++
Sbjct: 112 SQTISEMKQLTSLDID-NNCVDEQGVKLIGELHNLTRLNI-GCNRIGLEGFKSISGMKQM 169

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             LN+       +   K +S L +L    IS +++ + G   +  L+ LT+L++    + 
Sbjct: 170 RDLNVSSSGAGVEG-AKLMSQLKHLTKFNISGNEIGEEGAKSIGELKWLTMLDICSNQIG 228

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
           A    S+S L  L  L ++   +  +G +  S++  L  L +G N+I  +    +  L  
Sbjct: 229 AEGAKSISQLERLTKLYISGNGIGPEGAQSISQLSHLTTLFIGGNQIGSKGSKSISQLKR 288

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  L +DS  IG EG  +++ L NLK L +SD Q+G  G + +S L +L ++ +    I 
Sbjct: 289 LTILYIDSNEIGSEGANSISQLSNLKELYISDNQIGDEGAKSISQLKHLTTLEILRNEIG 348

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           D   + ++ L  L  L++   +I D G   L  +
Sbjct: 349 DQGAKSISQLKQLTRLHISCNRIGDQGAKLLNRM 382


>gi|115495249|ref|NP_001069415.1| F-box/LRR-repeat protein 14 [Bos taurus]
 gi|225543352|ref|NP_598701.2| F-box/LRR-repeat protein 14 [Mus musculus]
 gi|404312677|ref|NP_001258205.1| F-box/LRR-repeat protein 14 [Rattus norvegicus]
 gi|296211085|ref|XP_002752262.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Callithrix
           jacchus]
 gi|332249161|ref|XP_003273733.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Nomascus
           leucogenys]
 gi|348555895|ref|XP_003463758.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cavia porcellus]
 gi|395845614|ref|XP_003795522.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Otolemur
           garnettii]
 gi|48428059|sp|Q8BID8.1|FXL14_MOUSE RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
           leucine-rich repeat protein 14
 gi|122144674|sp|Q17R01.1|FXL14_BOVIN RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
           leucine-rich repeat protein 14
 gi|26351129|dbj|BAC39201.1| unnamed protein product [Mus musculus]
 gi|74196388|dbj|BAE33081.1| unnamed protein product [Mus musculus]
 gi|109659305|gb|AAI18094.1| F-box and leucine-rich repeat protein 14 [Bos taurus]
 gi|119609336|gb|EAW88930.1| F-box and leucine-rich repeat protein 14, isoform CRA_c [Homo
           sapiens]
 gi|148667199|gb|EDK99615.1| F-box and leucine-rich repeat protein 14 [Mus musculus]
 gi|149049602|gb|EDM02056.1| rCG29594 [Rattus norvegicus]
 gi|296487055|tpg|DAA29168.1| TPA: F-box/LRR-repeat protein 14 [Bos taurus]
          Length = 400

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 146 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 382

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query: 387 NDIKRL 392
           + I R+
Sbjct: 320 DGINRM 325



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 167 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 222

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 223 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 282

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +   ++  L+ LN+G    
Sbjct: 283 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 342

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 343 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396


>gi|18204097|gb|AAH21329.1| F-box and leucine-rich repeat protein 14 [Mus musculus]
          Length = 400

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 146 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 382

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query: 387 NDIKRL 392
           + I R+
Sbjct: 320 DGINRM 325



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 167 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 222

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 223 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 282

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +  + +  L+ LN+G    
Sbjct: 283 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 342

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 343 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396


>gi|361069065|gb|AEW08844.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137600|gb|AFG49921.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137602|gb|AFG49922.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137604|gb|AFG49923.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137606|gb|AFG49924.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137608|gb|AFG49925.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137610|gb|AFG49926.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137612|gb|AFG49927.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137614|gb|AFG49928.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137616|gb|AFG49929.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137618|gb|AFG49930.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137620|gb|AFG49931.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137622|gb|AFG49932.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137624|gb|AFG49933.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137626|gb|AFG49934.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137628|gb|AFG49935.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137630|gb|AFG49936.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137632|gb|AFG49937.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
 gi|383137634|gb|AFG49938.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
          Length = 73

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 59/73 (80%), Gaps = 1/73 (1%)

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           QN +LTD  LE +SG+T LVSLNVSN+R+T+ GL+HL+PLKNL SL+L++CKVT  +IK+
Sbjct: 1   QNSHLTDGALEFVSGMTALVSLNVSNTRVTNTGLQHLRPLKNLTSLSLQACKVTWPEIKK 60

Query: 392 LQSRDLPNLVSFR 404
           LQ+  LPNL   R
Sbjct: 61  LQA-TLPNLAGVR 72



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 40/59 (67%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
           +TD  ++ +SG+T L SL +S ++VT++G+ +L+ L+ LT L+L+ C VT   +  L A
Sbjct: 5   LTDGALEFVSGMTALVSLNVSNTRVTNTGLQHLRPLKNLTSLSLQACKVTWPEIKKLQA 63


>gi|22748931|ref|NP_689654.1| F-box/LRR-repeat protein 14 [Homo sapiens]
 gi|386782025|ref|NP_001247451.1| F-box/LRR-repeat protein 14 [Macaca mulatta]
 gi|390467358|ref|XP_003733751.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Callithrix
           jacchus]
 gi|402884767|ref|XP_003905846.1| PREDICTED: F-box/LRR-repeat protein 14 [Papio anubis]
 gi|441670511|ref|XP_004092204.1| PREDICTED: F-box/LRR-repeat protein 14 [Nomascus leucogenys]
 gi|48428083|sp|Q8N1E6.1|FXL14_HUMAN RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
           leucine-rich repeat protein 14
 gi|20381419|gb|AAH28132.1| F-box and leucine-rich repeat protein 14 [Homo sapiens]
 gi|119609334|gb|EAW88928.1| F-box and leucine-rich repeat protein 14, isoform CRA_a [Homo
           sapiens]
 gi|312150528|gb|ADQ31776.1| F-box and leucine-rich repeat protein 14 [synthetic construct]
 gi|355563880|gb|EHH20380.1| F-box and leucine-rich repeat protein 14 [Macaca mulatta]
 gi|384945426|gb|AFI36318.1| F-box/LRR-repeat protein 14 [Macaca mulatta]
 gi|410217776|gb|JAA06107.1| F-box and leucine-rich repeat protein 14 [Pan troglodytes]
          Length = 418

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 114/351 (32%), Positives = 184/351 (52%), Gaps = 50/351 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           +   +RIT  GL  +  L  L+ L L   ++T  D ++    D   L + R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMT--DSEKEARGDFSPLFTVR 411



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 146 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 382

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 167 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 222

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 223 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 282

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +   ++  L+ LN+G    
Sbjct: 283 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 342

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 343 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396


>gi|332249163|ref|XP_003273734.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Nomascus
           leucogenys]
 gi|119609335|gb|EAW88929.1| F-box and leucine-rich repeat protein 14, isoform CRA_b [Homo
           sapiens]
          Length = 401

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 179/335 (53%), Gaps = 48/335 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           +   +RIT  GL  +  L  L+ L L   ++T ++
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 397



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 146 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 382

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query: 387 NDIKRL 392
           + I R+
Sbjct: 320 DGINRM 325



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 167 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 222

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 223 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 282

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +  + +  L+ LN+G    
Sbjct: 283 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 342

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 343 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396


>gi|343420998|emb|CCD18943.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
          Length = 1355

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 142/405 (35%), Positives = 200/405 (49%), Gaps = 62/405 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS +SNL +L       IT   +   + LI L KLDL  CT I   +  L  L +LE+LN
Sbjct: 90  LSLISNLRTLDLSHCTGIT--DVPPLSMLIRLEKLDLSGCTGI-TDVSPLSKLSRLETLN 146

Query: 65  IKWCNCITD---------------------SDMKPLSGLTNLKSLQIS-CSKVTDSGIAY 102
           + +C  ITD                     +D+ PLS ++NL SL +S C+ +TD  +  
Sbjct: 147 LMYCTGITDVSPLSKLSRLETLNLMYCTGITDVSPLSLMSNLCSLYLSHCTGITD--VPP 204

Query: 103 LKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161
           L  L +L  L+L GC  +T      LS L  L  LNL  C    D     SK+  L+ LN
Sbjct: 205 LSMLIRLEKLDLSGCTGITDV--SPLSKLSRLETLNLMYCTGITD-VSPLSKLSRLETLN 261

Query: 162 LGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L +   ITD  +  L  L+ LE+LNL  C GI D   ++L    NL  L LS    G + 
Sbjct: 262 LMYCTGITD--VSPLSKLSRLETLNLMYCTGITDVSPLSLMS--NLCSLYLSHCT-GITD 316

Query: 220 LRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
           +  LS L  LE ++LS  TGI+D S   L+ LS L++LNL    +  TG+  ++ L+ L+
Sbjct: 317 VSPLSMLIRLEKLDLSGCTGITDVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLS 370

Query: 279 HLD----LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQN 333
            L+    ++   ITD   + L    NL SL +    G+TD  V  + D  +L  L+LS  
Sbjct: 371 RLETLNLMYCTGITD--VSPLSLMSNLCSLNLMYCTGITD--VSPLSDFINLRTLDLSFY 426

Query: 334 CNLTDKTLELISGLTGLVSL-NVSNSRITSAGLRHLKPLKNLRSL 377
             +TD     +S L+ L+ L N+S S I  AG+  + PL  L SL
Sbjct: 427 TGITD-----VSPLSMLIRLENLSLSNI--AGITDVSPLSKLSSL 464



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 140/389 (35%), Positives = 201/389 (51%), Gaps = 40/389 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS L  L +LS      IT   +   + L +L  LDL  CT I   + +L  L +LE+LN
Sbjct: 435 LSMLIRLENLSLSNIAGIT--DVSPLSKLSSLRTLDLSHCTGI-TDVSSLSKLSRLETLN 491

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAA 122
           + +C  IT  D+ PLS ++NL SL +S C+ +TD  +  L  L +L  L+L GC  +T  
Sbjct: 492 LMYCTGIT--DVSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGCTGITDV 547

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 181
               LS L  L  LNL  C    D     SK+  L+ LNL +   ITD  +  L  ++NL
Sbjct: 548 --SPLSKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNL 602

Query: 182 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGI 239
            SL L  C GI D  +  L+ L  L+ L+LS    G + +  LS L+ LE++NL + TGI
Sbjct: 603 CSLYLSHCTGITD--VPPLSMLIRLEKLDLSGCT-GITDVSPLSKLSRLETLNLMYCTGI 659

Query: 240 SDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRN 297
           +D S   L+ LS L++LNL     ITD  ++ L+ ++ L  LDL     ITD   + L  
Sbjct: 660 TDVS--PLSKLSRLETLNLMYCTGITD--VSPLSLISNLRTLDLSHCTGITD--VSPLSL 713

Query: 298 FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
             NL SL +    G+TD  V  +  +S+L  L LS    +TD  +  +S L+ L +LN+ 
Sbjct: 714 MSNLCSLYLSHCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSKLSRLETLNL- 768

Query: 357 NSRITSAGLRHLKPL---KNLRSLTLESC 382
              +   G+  + PL    NLR+L L  C
Sbjct: 769 ---MYCTGITDVSPLSLISNLRTLDLSHC 794



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 194/383 (50%), Gaps = 41/383 (10%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            LS +SNL +L       IT   +   + + NL  L L  CT I   +  L  L +LE+LN
Sbjct: 780  LSLISNLRTLDLSHCTGIT--DVSPLSLMSNLCSLYLSHCTGI-TDVPPLSKLSRLETLN 836

Query: 65   IKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAA 122
            + +C  IT  D+ PLS L+ L++L  + C+ +TD  ++ L  L +L  LNL  C  +T  
Sbjct: 837  LMYCTGIT--DVSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGITDV 892

Query: 123  CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 181
                LS + +L  L L+ C    D     SK+  L+ LNL +   ITD  +  L  ++NL
Sbjct: 893  --SPLSLMSNLCSLYLSHCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSLISNL 947

Query: 182  ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGI 239
             +L+L  C GI D   ++L    NL  L LS    G + +  LS L+ LE++NL + TGI
Sbjct: 948  RTLDLSHCTGITDVSPLSLMS--NLCSLYLSHCT-GITDVPPLSKLSRLETLNLMYCTGI 1004

Query: 240  SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYL 295
            +D S   L+ LS L++LNL    +  TG+  ++ L+ L+ L+    ++   ITD   + L
Sbjct: 1005 TDVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPL 1056

Query: 296  RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
                NL SL +    G+TD  V  +  L  L  L+LS    +TD  +  +S L+ L +LN
Sbjct: 1057 SLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGCTGITD--VSPLSKLSRLETLN 1112

Query: 355  VSNSRITSAGLRHLKPLKNLRSL 377
            +    +   G+  + PL  L  L
Sbjct: 1113 L----MYCTGITDVSPLSKLSRL 1131



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 142/432 (32%), Positives = 205/432 (47%), Gaps = 80/432 (18%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--------------- 49
           LS +SNL SL       IT   +   + LI L KLDL  CT I                 
Sbjct: 297 LSLMSNLCSLYLSHCTGIT--DVSPLSMLIRLEKLDLSGCTGITDVSPLSKLSRLETLNL 354

Query: 50  ----GLVNLKGLMKL---ESLNIKWCNCITD---------------------SDMKPLSG 81
               G+ ++  L KL   E+LN+ +C  ITD                     +D+ PLS 
Sbjct: 355 MYCTGITDVSPLSKLSRLETLNLMYCTGITDVSPLSLMSNLCSLNLMYCTGITDVSPLSD 414

Query: 82  LTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
             NL++L +S  + +TD S ++ L  L+ L+L N+ G  +T      LS L SL  L+L+
Sbjct: 415 FINLRTLDLSFYTGITDVSPLSMLIRLENLSLSNIAG--ITDV--SPLSKLSSLRTLDLS 470

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLV 197
            C    D     SK+  L+ LNL +   ITD  +  L  ++NL SL L  C GI D  + 
Sbjct: 471 HCTGITD-VSSLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VP 525

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 256
            L+ L  L+ L+LS    G + +  LS L+ LE++NL + TGI+D S   L+ LS L++L
Sbjct: 526 PLSMLIRLEKLDLSGCT-GITDVSPLSKLSRLETLNLMYCTGITDVS--PLSKLSRLETL 582

Query: 257 NL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTD 313
           NL     ITD  ++ L+ ++ L  L L     ITD     L     L  L++ G  G+TD
Sbjct: 583 NLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGCTGITD 638

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL-- 371
             V  +  LS L  LNL     +TD  +  +S L+ L +LN+    +   G+  + PL  
Sbjct: 639 --VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNL----MYCTGITDVSPLSL 690

Query: 372 -KNLRSLTLESC 382
             NLR+L L  C
Sbjct: 691 ISNLRTLDLSHC 702



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 122/394 (30%), Positives = 189/394 (47%), Gaps = 75/394 (19%)

Query: 35  NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--------------------- 73
           NL  L L  CT I   +  L  L +LE+LN+ +C  ITD                     
Sbjct: 3   NLCSLYLSHCTGI-TDVPPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMYCTGI 61

Query: 74  SDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
           +D+ PLS ++NL++L +S C+ +TD S ++ +  L+ L L +  G  +T      LS L 
Sbjct: 62  TDVSPLSLISNLRTLDLSHCTGITDVSPLSLISNLRTLDLSHCTG--ITDV--PPLSMLI 117

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC- 189
            L  L+L+ C    D     SK+  L+ LNL +   ITD  +  L  L+ LE+LNL  C 
Sbjct: 118 RLEKLDLSGCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCT 174

Query: 190 GIGDEGLVNL-TGLCNL---KCLELSDTQ----------------VGSSGLRHLSGLTNL 229
           GI D   ++L + LC+L    C  ++D                   G + +  LS L+ L
Sbjct: 175 GITDVSPLSLMSNLCSLYLSHCTGITDVPPLSMLIRLEKLDLSGCTGITDVSPLSKLSRL 234

Query: 230 ESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFG 284
           E++NL + TGI+D S   L+ LS L++LNL    +  TG+  ++ L+ L+ L+    ++ 
Sbjct: 235 ETLNLMYCTGITDVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYC 288

Query: 285 ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
             ITD   + L    NL SL +    G+TD  V  +  L  L  L+LS    +TD  +  
Sbjct: 289 TGITD--VSPLSLMSNLCSLYLSHCTGITD--VSPLSMLIRLEKLDLSGCTGITD--VSP 342

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
           +S L+ L +LN+    +   G+  + PL  L  L
Sbjct: 343 LSKLSRLETLNL----MYCTGITDVSPLSKLSRL 372



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 156/342 (45%), Gaps = 75/342 (21%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--------------- 49
            LS +SNL SL       IT   +   + LI L KLDL  CT I                 
Sbjct: 1056 LSLMSNLCSLYLSHCTGIT--DVPPLSMLIRLEKLDLSGCTGITDVSPLSKLSRLETLNL 1113

Query: 50   ----GLVNLKGLMKL---ESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 101
                G+ ++  L KL   E+LN+ +C  IT  D+ PLS ++NL SL +S C+ +TD  + 
Sbjct: 1114 MYCTGITDVSPLSKLSRLETLNLMYCTGIT--DVSPLSLMSNLCSLYLSHCTGITD--VP 1169

Query: 102  YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161
             L  L +L  L+L GC                         ++D      SK+  L+ LN
Sbjct: 1170 PLSMLIRLEKLDLSGC-----------------------TGITD--VSPLSKLSRLETLN 1204

Query: 162  LGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
            L +   ITD  +  L  L+ LE+LNL  C GI D     L+   NL+ L+LS    G + 
Sbjct: 1205 LMYCTGITD--VSPLSKLSRLETLNLMYCTGITDVS--PLSDFINLRTLDLS-FYTGITD 1259

Query: 220  LRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
            +  LS L   E+++LS   GI+D S   L+ L  L  L L       TG+  ++ L+ L+
Sbjct: 1260 VSPLSMLIRFENLSLSNIAGITDVS--PLSTLIRLNVLYLSGC----TGITDVSPLSKLS 1313

Query: 279  HLD----LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAG 315
             L+    ++   ITD   + L    NLR+L++    G+TD  
Sbjct: 1314 RLETLNLMYCTGITD--VSPLSLISNLRTLDLSHCTGITDVS 1353


>gi|281349609|gb|EFB25193.1| hypothetical protein PANDA_001999 [Ailuropoda melanoleuca]
          Length = 398

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 179/335 (53%), Gaps = 48/335 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           +   +RIT  GL  +  L  L+ L L   ++T ++
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 397



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 146 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 382

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query: 387 NDIKRL 392
           + I R+
Sbjct: 320 DGINRM 325



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 167 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 222

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 223 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 282

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +   ++  L+ LN+G    
Sbjct: 283 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 342

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 343 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396


>gi|320169763|gb|EFW46662.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 684

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 174/387 (44%), Gaps = 7/387 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
            SGL+ L SL F  NN IT+  + AF+GL  L +L L     T I        GL  L  
Sbjct: 53  FSGLTALNSL-FLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIPDN--TFTGLTALTR 109

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++ +   I        +GL  L+ L ++ +++T+       GL  LT L+L    +T+ 
Sbjct: 110 LDV-YVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTRLSLFNNNITSI 168

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
              + + L +L YL+L   Q++      F  +  L  L+L  NEIT        GLT L 
Sbjct: 169 PASAFADLSALTYLDLAGNQMTSLSANAFIGLTELTYLSLTSNEITSISPAAFTGLTALT 228

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L L++  I      +  GL +L  L + + Q+ S      +GL +L  ++L    ++  
Sbjct: 229 ELVLENNLIASISANDFAGLTSLNLLRMRNNQITSLSANGFAGLPSLTELDLDLNLMTSI 288

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
                AGL+SL  L++   QIT         L  LT L L   +IT   A       +L 
Sbjct: 289 DASAFAGLTSLNLLSVQNNQITSISANGFAGLPSLTALGLESNQITSISANAFAGLTSLN 348

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            L + G  +T         ++SL++L+L  N  +T  +    +GLT ++ L ++++  T+
Sbjct: 349 FLRLEGNQITSISANAFAAVTSLSVLSLHFN-QITSFSANAFTGLTTMMYLLLNSNPFTT 407

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDI 389
                 + L+N   L+LE   ++ N+ 
Sbjct: 408 LPPGLFQGLQNGLILSLEDSSLSPNNF 434



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 137/318 (43%), Gaps = 25/318 (7%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N  T       SGLT L SL +S + +T   +    GL  LT L+L G P+T    ++ +
Sbjct: 43  NLFTSVAANAFSGLTALNSLFLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIPDNTFT 102

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L +L  L++   Q++      F+ +  L+VL+L  N+IT+                   
Sbjct: 103 GLTALTRLDVYVTQIASISASAFAGLPVLEVLSLNDNQITN------------------- 143

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             I       LT L  L     + T + +S    LS LT L+   L+   ++  S     
Sbjct: 144 --IASNTFTGLTALTRLSLFNNNITSIPASAFADLSALTYLD---LAGNQMTSLSANAFI 198

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
           GL+ L  L+L + +IT    AA T LT LT L L    I    A       +L  L +  
Sbjct: 199 GLTELTYLSLTSNEITSISPAAFTGLTALTELVLENNLIASISANDFAGLTSLNLLRMRN 258

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
             +T         L SLT L+L  N  +T       +GLT L  L+V N++ITS      
Sbjct: 259 NQITSLSANGFAGLPSLTELDLDLNL-MTSIDASAFAGLTSLNLLSVQNNQITSISANGF 317

Query: 369 KPLKNLRSLTLESCKVTA 386
             L +L +L LES ++T+
Sbjct: 318 AGLPSLTALGLESNQITS 335



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 101/227 (44%), Gaps = 1/227 (0%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L L  N  T        GLT L SL L +  I    +   +GL  L  L L+   + +  
Sbjct: 38  LRLHLNLFTSVAANAFSGLTALNSLFLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIP 97

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
               +GLT L  +++  T I+  S    AGL  L+ L+L+  QIT+      T LT LT 
Sbjct: 98  DNTFTGLTALTRLDVYVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTR 157

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L LF   IT   A+   +   L  L++ G  +T         L+ LT L+L+ N  +T  
Sbjct: 158 LSLFNNNITSIPASAFADLSALTYLDLAGNQMTSLSANAFIGLTELTYLSLTSN-EITSI 216

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
           +    +GLT L  L + N+ I S        L +L  L + + ++T+
Sbjct: 217 SPAAFTGLTALTELVLENNLIASISANDFAGLTSLNLLRMRNNQITS 263


>gi|242089917|ref|XP_002440791.1| hypothetical protein SORBIDRAFT_09g006650 [Sorghum bicolor]
 gi|241946076|gb|EES19221.1| hypothetical protein SORBIDRAFT_09g006650 [Sorghum bicolor]
          Length = 608

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 174/387 (44%), Gaps = 62/387 (16%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +LSG++ L  L   R   I+  G+K    + +L KL L      + G++ +  L  L  L
Sbjct: 117 SLSGMNTLKDLDLSRCKKISDAGIKHIVTIESLEKLHLSETELTNNGVMLISSLTNLSFL 176

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-------G 116
           ++     +TD  ++ L  LT L+ L I  S+ T+ G + LK   +L  LNL         
Sbjct: 177 DLGGI-LMTDKSLQSLQVLTRLEHLDIWGSETTNEGASTLKSFARLIFLNLALTRVNHLS 235

Query: 117 CPVTAACLD-------------------------SLSALG------------SLFYLNLN 139
            P T  CL+                         S +  G            SL +L+L+
Sbjct: 236 IPPTTRCLNMSNCEIHSICDEDSEVPVPLENFIVSAATFGNIDKVFSSIQASSLTHLDLS 295

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVN 198
            C+LS+       K+ +L+ L+L +N ITD  + H+  L TNL+ L+L + GI  + L  
Sbjct: 296 SCKLSN--LSFLEKMKNLEHLDLSYNIITDGAIEHIAKLGTNLQYLSLKNTGITSQALCI 353

Query: 199 LTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK----LAG---- 249
           L G + NL  L L++T++  S L ++  +  L +I+LS T I   +L      +AG    
Sbjct: 354 LAGTVPNLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQTSIKGCALENKFYLMAGFTHM 413

Query: 250 -----LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
                L  L+SLNL+   ++   +  L SL  L +L L    ++D     L    NL  L
Sbjct: 414 SAFEHLKYLESLNLEDTPLSAEVIPPLASLAALKYLYLKSDFLSDPALHALSAASNLIHL 473

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLS 331
             CG  L+ +G+      ++L +L+LS
Sbjct: 474 GFCGNILSSSGLLQFVPPTTLCVLDLS 500



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 150/316 (47%), Gaps = 31/316 (9%)

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFS 152
           V    +AYL   + L +L L  C  +    + SLS + +L  L+L+RC+ +SD G +   
Sbjct: 85  VDAEWLAYLGSFRFLRVLTLADCKNIDNDAVWSLSGMNTLKDLDLSRCKKISDAGIKHIV 144

Query: 153 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 212
            I SL+ L+L   E+T+  ++ +  LTNL  L+L    + D+ L +L  L  L+ L++  
Sbjct: 145 TIESLEKLHLSETELTNNGVMLISSLTNLSFLDLGGILMTDKSLQSLQVLTRLEHLDIWG 204

Query: 213 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 272
           ++  + G   L     L  +NL+ T ++  S+        L   N +   I D       
Sbjct: 205 SETTNEGASTLKSFARLIFLNLALTRVNHLSIPPTT--RCLNMSNCEIHSICDEDSEVPV 262

Query: 273 SL----------------------TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
            L                      + LTHLDL   ++  S  ++L   KNL  L++    
Sbjct: 263 PLENFIVSAATFGNIDKVFSSIQASSLTHLDLSSCKL--SNLSFLEKMKNLEHLDLSYNI 320

Query: 311 LTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNSRITSAGLRHL 368
           +TD  ++HI  L ++L  L+L +N  +T + L +++G +  L SL+++N++I  + L ++
Sbjct: 321 ITDGAIEHIAKLGTNLQYLSL-KNTGITSQALCILAGTVPNLTSLSLANTKIDDSALAYI 379

Query: 369 KPLKNLRSLTLESCKV 384
             +  LR++ L    +
Sbjct: 380 GMIPLLRTIDLSQTSI 395



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 107/191 (56%), Gaps = 11/191 (5%)

Query: 149 EKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 206
           E FS+  S++ ++L GF  +  E L +L     L  L L  C  I ++ + +L+G+  LK
Sbjct: 68  EVFSR--SVEEVDLSGFLSVDAEWLAYLGSFRFLRVLTLADCKNIDNDAVWSLSGMNTLK 125

Query: 207 CLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
            L+LS   ++  +G++H+  + +LE ++LS T +++  +  ++ L++L  L+L    +TD
Sbjct: 126 DLDLSRCKKISDAGIKHIVTIESLEKLHLSETELTNNGVMLISSLTNLSFLDLGGILMTD 185

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
             L +L  LT L HLD++G+  T+ GA+ L++F  L  L +    LT   V H+    + 
Sbjct: 186 KSLQSLQVLTRLEHLDIWGSETTNEGASTLKSFARLIFLNL---ALTR--VNHLSIPPTT 240

Query: 326 TLLNLSQNCNL 336
             LN+S NC +
Sbjct: 241 RCLNMS-NCEI 250



 Score = 45.4 bits (106), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 30/192 (15%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRI------HGGLVNLKGLMKLE 61
           +NL  LS + N  IT+Q +   AG + NL  L L   T+I      + G++ L   + L 
Sbjct: 334 TNLQYLSLK-NTGITSQALCILAGTVPNLTSLSLAN-TKIDDSALAYIGMIPLLRTIDLS 391

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
             +IK   C  ++    ++G T++            S   +LK L+ L   NLE  P++A
Sbjct: 392 QTSIK--GCALENKFYLMAGFTHM------------SAFEHLKYLESL---NLEDTPLSA 434

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF--NEITDECLVHLKGLT 179
             +  L++L +L YL L    LSD      S   +L  ++LGF  N ++   L+     T
Sbjct: 435 EVIPPLASLAALKYLYLKSDFLSDPALHALSAASNL--IHLGFCGNILSSSGLLQFVPPT 492

Query: 180 NLESLNLDSCGI 191
            L  L+L  C I
Sbjct: 493 TLCVLDLSGCWI 504


>gi|13905232|gb|AAH06913.1| Fbx14l protein, partial [Mus musculus]
          Length = 327

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 13  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 50

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 51  LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 110

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 111 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 170

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 171 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 229

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 230 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 289

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 290 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 327



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 13  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 72

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 73  E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 129

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 130 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 189

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 190 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 249

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 250 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 309

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 310 LKVLNL 315



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 13  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 71

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 72  LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 127

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 128 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 186

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 187 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 246

Query: 387 NDIKRL 392
           + I R+
Sbjct: 247 DGINRM 252



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 94  GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 149

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 150 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 209

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +  + +  L+ LN+G    
Sbjct: 210 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 269

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 270 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 323


>gi|403286756|ref|XP_003934642.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Saimiri
           boliviensis boliviensis]
          Length = 349

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 180/335 (53%), Gaps = 48/335 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 34  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 71

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 72  LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 131

Query: 193 DEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+         +L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 132 DVGIGHLAGMTRSAAEGCLSLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 191

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 192 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 250

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 251 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 310

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           +   +RIT  GL  +  L  L+ L L   ++T ++
Sbjct: 311 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 345



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 34  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 93

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 94  E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 150

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 151 SLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 210

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 211 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 270

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 271 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 330

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 331 LKVLNL 336



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 123/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 34  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 92

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 93  LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 148

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
              L  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 149 CLSLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 207

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 208 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 267

Query: 387 NDIKRL 392
           + I R+
Sbjct: 268 DGINRM 273



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        ++L +L L+ C +    L +L    
Sbjct: 115 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLSLEQLTLQDCQK----LTDLSLKH 170

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 171 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 230

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +  + +  L+ LN+G    
Sbjct: 231 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 290

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 291 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 344


>gi|149175123|ref|ZP_01853746.1| hypothetical protein PM8797T_25626 [Planctomyces maris DSM 8797]
 gi|148846101|gb|EDL60441.1| hypothetical protein PM8797T_25626 [Planctomyces maris DSM 8797]
          Length = 1079

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 7/234 (2%)

Query: 142 QLSDDGCEKF------SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           QL+ +G  +F      +K GS +++ L    +T E L  L+    L+ L +    +GDE 
Sbjct: 36  QLAVEGLRRFCTNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGDEA 95

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           L+ +  L NL  L LS++ VG SGL  L  L  LE + L  T ++D  L+ L+ L  LK 
Sbjct: 96  LLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKV 155

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L+L    +TD G+  L  L  L  L L G +++D+G   L   K L+ L +    +T + 
Sbjct: 156 LSLRNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGSQ 215

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
           +  +  L SL  L+L++   L    ++ +SGLT L  L +  + +  + ++ LK
Sbjct: 216 LSALNTLESLEHLSLNR-TKLQPVVVDALSGLTQLKGLEIQYTGLGESSIQQLK 268



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 100/210 (47%)

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
           L+ L    VT   L+ L     L YL +    L D+       + +L  L L  + + D 
Sbjct: 59  LVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGDEALLYIRDLTNLDTLMLSESAVGDS 118

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
            L  LK L  LE L LD+  + D GL +L+ L  LK L L +  V   G++ L+ L NLE
Sbjct: 119 GLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKVLSLRNLNVTDQGMQTLADLNNLE 178

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
            + LS T +SD  L+ L  L  LK L L    IT + L+AL +L  L HL L   ++   
Sbjct: 179 VLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGSQLSALNTLESLEHLSLNRTKLQPV 238

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
               L     L+ LEI   GL ++ ++ +K
Sbjct: 239 VVDALSGLTQLKGLEIQYTGLGESSIQQLK 268



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 5/252 (1%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
            T+ +     +  +  R    +  +G++ F   +   K    R  R+    V L+ L +L
Sbjct: 16  FTQPVFPAEKVAPVEARTPEQLAVEGLRRFCTNLQTNKDGSARLVRLSKPHVTLEALNQL 75

Query: 61  ESLN-----IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 115
           E           C  + D  +  +  LTNL +L +S S V DSG++ LK L KL  L L+
Sbjct: 76  EQFPRLDYLAMVCPHLGDEALLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLD 135

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
              VT A L  LS+L  L  L+L    ++D G +  + + +L+VL L   +++D  L  L
Sbjct: 136 NTKVTDAGLQHLSSLKQLKVLSLRNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSL 195

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
             L  L+ L L    I    L  L  L +L+ L L+ T++    +  LSGLT L+ + + 
Sbjct: 196 TELKQLKILYLARTAITGSQLSALNTLESLEHLSLNRTKLQPVVVDALSGLTQLKGLEIQ 255

Query: 236 FTGISDGSLRKL 247
           +TG+ + S+++L
Sbjct: 256 YTGLGESSIQQL 267



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 11/187 (5%)

Query: 214 QVGSSGLRHLSGLTNLES--------INLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
           Q+   GLR     TNL++        + LS   ++  +L +L     L  L +    + D
Sbjct: 36  QLAVEGLRRFC--TNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGD 93

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
             L  +  LT L  L L  + + DSG + L+    L  L +    +TDAG++H+  L  L
Sbjct: 94  EALLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQL 153

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
            +L+L +N N+TD+ ++ ++ L  L  L +S ++++ AGL+ L  LK L+ L L    +T
Sbjct: 154 KVLSL-RNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTAIT 212

Query: 386 ANDIKRL 392
            + +  L
Sbjct: 213 GSQLSAL 219



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 97/182 (53%), Gaps = 4/182 (2%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +  L+NL +L     +A+   G+     L  L +L L+       GL +L  L +L+ L+
Sbjct: 99  IRDLTNLDTLMLS-ESAVGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKVLS 157

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           ++  N +TD  M+ L+ L NL+ L +S ++V+D+G+  L  L++L +L L    +T + L
Sbjct: 158 LRNLN-VTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGSQL 216

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            +L+ L SL +L+LNR +L     +  S +  LK L + +  + +  +  LK   NLE  
Sbjct: 217 SALNTLESLEHLSLNRTKLQPVVVDALSGLTQLKGLEIQYTGLGESSIQQLK--RNLEKT 274

Query: 185 NL 186
           N+
Sbjct: 275 NI 276


>gi|260804809|ref|XP_002597280.1| hypothetical protein BRAFLDRAFT_260896 [Branchiostoma floridae]
 gi|229282543|gb|EEN53292.1| hypothetical protein BRAFLDRAFT_260896 [Branchiostoma floridae]
          Length = 398

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 169/325 (52%), Gaps = 46/325 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL-- 133
           + G++N+ SL +S C  +TD G+  A+ + +  LT LNL  C          S+LG +  
Sbjct: 87  VQGMSNIVSLNLSGCYNLTDIGLSHAFTQDVPSLTELNLSLCKQITD-----SSLGRIAQ 141

Query: 134 FYLNLNRCQLSDDGCEKFSKIG---------SLKVLNL-GFNEITDECLVHLKGLTNLES 183
           +  NL R  L   GC   +  G          L+ LNL     I+D  + HL G++   +
Sbjct: 142 YLKNLERLDLG--GCCNITNTGLLLCAWGLLKLRYLNLRSCRHISDVGIGHLSGISKNAA 199

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFT-GISD 241
                     EG ++L  LC   C +L+D       L+H+S GL  L+S+NLSF  GISD
Sbjct: 200 ----------EGCLHLEHLCLQDCQKLTDL-----ALKHVSKGLQRLKSLNLSFCCGISD 244

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAAYLRN- 297
           G +  LA +SSLK LNL +   I+D G+A L   +  ++HLD+ F  ++ DS   ++ + 
Sbjct: 245 GGMMYLAKMSSLKELNLRSCDNISDIGIAHLADGSATISHLDVSFCDKVGDSALGHIAHG 304

Query: 298 FKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNV 355
             +L SL +    ++D G+ + ++ +  LT L++ Q   +TDK L LI+  LT L ++++
Sbjct: 305 LYHLHSLSLGSCNISDEGLNRMVRSMHELTTLDIGQCYKITDKGLGLIADNLTQLTNIDL 364

Query: 356 SN-SRITSAGLRHLKPLKNLRSLTL 379
              ++IT+AGL  +  L  L  L L
Sbjct: 365 YGCTKITTAGLERIMQLPRLSVLNL 389



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 114/222 (51%), Gaps = 18/222 (8%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L  L+ R    I+  G+   +G+        ++L  L L+ C ++    L ++ KG
Sbjct: 168 GLLKLRYLNLRSCRHISDVGIGHLSGISKNAAEGCLHLEHLCLQDCQKLTDLALKHVSKG 227

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L +L+SLN+ +C  I+D  M  L+ +++LK L + SC  ++D GIA+L  G   ++ L++
Sbjct: 228 LQRLKSLNLSFCCGISDGGMMYLAKMSSLKELNLRSCDNISDIGIAHLADGSATISHLDV 287

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDE 170
             C  V  + L  ++  L  L  L+L  C +SD+G  +  + +  L  L++G   +ITD+
Sbjct: 288 SFCDKVGDSALGHIAHGLYHLHSLSLGSCNISDEGLNRMVRSMHELTTLDIGQCYKITDK 347

Query: 171 CL-VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 210
            L +    LT L +++L  C  I   GL  +  L  L  L L
Sbjct: 348 GLGLIADNLTQLTNIDLYGCTKITTAGLERIMQLPRLSVLNL 389


>gi|290977818|ref|XP_002671634.1| predicted protein [Naegleria gruberi]
 gi|284085204|gb|EFC38890.1| predicted protein [Naegleria gruberi]
          Length = 359

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 133/278 (47%), Gaps = 1/278 (0%)

Query: 30  FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 89
           F  +  L K+ L   T    G   L GL  L  +++   N   +  +  LS L+ L  L 
Sbjct: 58  FESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLS 117

Query: 90  I-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 148
           I S + +T  G+ YL  L KLT L + G   T   +  +S+   L  LN+    +SD   
Sbjct: 118 IGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSA 177

Query: 149 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
           E  S +  L VL +  N+I  +    + G+  L+ L+     +G+ G+ ++  +  L  L
Sbjct: 178 EYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHL 237

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
            + +T++G+SG +++  L  L+ +++S+ GI++  +  L+ L  L  LN+    I +  L
Sbjct: 238 YICNTKIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLAL 297

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
             +  +  LT+LD+    I D G  Y+   K L+ + I
Sbjct: 298 TFINKMNQLTYLDVSYNGINDEGLIYISKMKPLKQVGI 335



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 130/264 (49%), Gaps = 7/264 (2%)

Query: 77  KPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLF 134
           K L+GL NL  + + S +   +  + YL  L +LT L++     +T   ++ LS L  L 
Sbjct: 80  KYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLSIGSKNNITYEGVEYLSQLSKLT 139

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           YL +   + +D+  +  S    LK LN+  N I+D+   ++  L  L  L +++  IG +
Sbjct: 140 YLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSAEYISNLDELTVLVINNNQIGSK 199

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           G   ++G+  LK L  S T++G +G++H+  +T L  + +  T I +   + +  L  L+
Sbjct: 200 GAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHLYICNTKIGNSGAKNIIKLKQLQ 259

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
            L++    I +  +  L+ L  LT L++ G+ I +    ++     L  L++   G+ D 
Sbjct: 260 LLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLALTFINKMNQLTYLDVSYNGINDE 319

Query: 315 GVKHIKDLSSLT-----LLNLSQN 333
           G+ +I  +  L       L LS+N
Sbjct: 320 GLIYISKMKPLKQVGIGFLQLSRN 343



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 97/177 (54%), Gaps = 3/177 (1%)

Query: 210 LSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTG 267
           LS   + S G ++L+GL NL  I++ S+    + SL  L+ LS L  L++ ++  IT  G
Sbjct: 69  LSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLSIGSKNNITYEG 128

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
           +  L+ L+ LT+L + G   TD     + +FK L++L I    ++D   ++I +L  LT+
Sbjct: 129 VEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSAEYISNLDELTV 188

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           L ++ N  +  K  + ISG+  L  L+ S +++   G++H+  +  L  L + + K+
Sbjct: 189 LVINNN-QIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHLYICNTKI 244



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 117/256 (45%), Gaps = 27/256 (10%)

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 206
           CE F  +  L  + L    I  +   +L GL NL  +++DS    G+E L  L+ L  L 
Sbjct: 55  CEIFESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLT 114

Query: 207 CLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
            L + S   +   G+ +LS L+ L  + ++    +D  ++ ++    LK+LN+ +  I+D
Sbjct: 115 KLSIGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISD 174

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
                +++L  LT L +   +I   GA ++   K L+ L      L + GVKHI +++ L
Sbjct: 175 KSAEYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQL 234

Query: 326 T------------------------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           T                        LL++S N  + ++ +EL+S L  L  LN+S S I 
Sbjct: 235 THLYICNTKIGNSGAKNIIKLKQLQLLDISYN-GINNEIVELLSQLDQLTFLNISGSAID 293

Query: 362 SAGLRHLKPLKNLRSL 377
           +  L  +  +  L  L
Sbjct: 294 NLALTFINKMNQLTYL 309



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 30/242 (12%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS LS LT LS    N IT +G++  + L  L  L +         +  +    +L++LN
Sbjct: 107 LSKLSQLTKLSIGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLN 166

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I + N I+D   + +S L  L  L I+ +++   G  ++ G+++L  L+     +    +
Sbjct: 167 I-YSNLISDKSAEYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGV 225

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-------------- 170
             +  +  L +L +   ++ + G +   K+  L++L++ +N I +E              
Sbjct: 226 KHICEMTQLTHLYICNTKIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFL 285

Query: 171 ----------CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK-----CLELSDTQV 215
                      L  +  +  L  L++   GI DEGL+ ++ +  LK      L+LS  Q+
Sbjct: 286 NISGSAIDNLALTFINKMNQLTYLDVSYNGINDEGLIYISKMKPLKQVGIGFLQLSRNQM 345

Query: 216 GS 217
           GS
Sbjct: 346 GS 347


>gi|410046126|ref|XP_003952131.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 14 [Pan
           troglodytes]
          Length = 568

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 114/351 (32%), Positives = 184/351 (52%), Gaps = 50/351 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 236 IQGMANIESLNLSGCYNLTDNGLGHA----------------------FVQEIGSLRALN 273

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 274 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 333

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 334 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 393

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 394 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 452

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 453 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 512

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           +   +RIT  GL  +  L  L+ L L   ++T  D ++    D   L + R
Sbjct: 513 LYGCTRITKRGLERITQLPCLKVLNLGLWQMT--DSEKEARGDFSPLFTVR 561



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 167/334 (50%), Gaps = 33/334 (9%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 236 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 295

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 296 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 352

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 353 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 412

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 413 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 472

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 473 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 532

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
           L +LNL     +TD   E     + L ++    S
Sbjct: 533 LKVLNLGL-WQMTDSEKEARGDFSPLFTVRTRGS 565



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 317 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 372

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 373 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 432

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLGF-NE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +   ++  L+ LN+G    
Sbjct: 433 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 492

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 493 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 546


>gi|290991310|ref|XP_002678278.1| predicted protein [Naegleria gruberi]
 gi|284091890|gb|EFC45534.1| predicted protein [Naegleria gruberi]
          Length = 346

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 133/271 (49%), Gaps = 4/271 (1%)

Query: 52  VNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +N + L ++ ++N +K C+CI   D   +  L NL +L ++C K+ D G+  +  +++LT
Sbjct: 71  INGQFLQRIVAVNGMKKCDCIPFLDQ--VFDLKNLTTLDVNCMKIKDEGVKIISEMKQLT 128

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
            LN+    ++   +  +S +  L  LN++R  +  +G    S++  L  LN+  N I  E
Sbjct: 129 NLNVGSSGISVEGVKYISGMNQLTNLNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAE 188

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
              ++  +  L  LN+ S  I D+G  +L  +  L  L ++   +   G + +S + +L 
Sbjct: 189 GTKYISEMKELTCLNIMSNAIHDKGAEHLRQMPKLNTLNINSNSISVEGAKFISEIQSLT 248

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           ++++ F  I D  ++ ++ +  L  L      I + G   ++ +  LT L++    +   
Sbjct: 249 NLDIGFNTIGDDGVKFISKMEKLTKLYTMYINIGEKGAKHISEMEQLTSLNINSNNVGTE 308

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           GA YL   K+L  + IC   + D   + IKD
Sbjct: 309 GAKYLCEMKHLTYMNICNNNV-DKQSQFIKD 338



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 127/256 (49%), Gaps = 3/256 (1%)

Query: 106 LQKLTLLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
           LQ++  +N ++ C      LD +  L +L  L++N  ++ D+G +  S++  L  LN+G 
Sbjct: 76  LQRIVAVNGMKKCDCIPF-LDQVFDLKNLTTLDVNCMKIKDEGVKIISEMKQLTNLNVGS 134

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           + I+ E + ++ G+  L +LN+    I  EG   ++ +  L  L +    + + G +++S
Sbjct: 135 SGISVEGVKYISGMNQLTNLNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAEGTKYIS 194

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
            +  L  +N+    I D     L  +  L +LN+++  I+  G   ++ +  LT+LD+  
Sbjct: 195 EMKELTCLNIMSNAIHDKGAEHLRQMPKLNTLNINSNSISVEGAKFISEIQSLTNLDIGF 254

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             I D G  ++   + L  L      + + G KHI ++  LT LN++ N N+  +  + +
Sbjct: 255 NTIGDDGVKFISKMEKLTKLYTMYINIGEKGAKHISEMEQLTSLNINSN-NVGTEGAKYL 313

Query: 345 SGLTGLVSLNVSNSRI 360
             +  L  +N+ N+ +
Sbjct: 314 CEMKHLTYMNICNNNV 329



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 29/204 (14%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +SG++ LT+L+  RNN I A+G    A  ++ +KL                    L +LN
Sbjct: 145 ISGMNQLTNLNISRNN-IRAEG----ARYVSEMKL--------------------LTNLN 179

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I + N I     K +S +  L  L I  + + D G  +L+ + KL  LN+    ++    
Sbjct: 180 I-YLNGIRAEGTKYISEMKELTCLNIMSNAIHDKGAEHLRQMPKLNTLNINSNSISVEGA 238

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             +S + SL  L++    + DDG +  SK+  L  L   +  I ++   H+  +  L SL
Sbjct: 239 KFISEIQSLTNLDIGFNTIGDDGVKFISKMEKLTKLYTMYINIGEKGAKHISEMEQLTSL 298

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCL 208
           N++S  +G EG      LC +K L
Sbjct: 299 NINSNNVGTEG---AKYLCEMKHL 319



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 78/154 (50%), Gaps = 4/154 (2%)

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           L ++  L +L +L+++  +I D G+  ++ +  LT+L++  + I+  G  Y+     L +
Sbjct: 94  LDQVFDLKNLTTLDVNCMKIKDEGVKIISEMKQLTNLNVGSSGISVEGVKYISGMNQLTN 153

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           L I    +   G +++ ++  LT LN+  N    + T + IS +  L  LN+ ++ I   
Sbjct: 154 LNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAEGT-KYISEMKELTCLNIMSNAIHDK 212

Query: 364 GLRHLKPLKNLRSLTLESCKVT---ANDIKRLQS 394
           G  HL+ +  L +L + S  ++   A  I  +QS
Sbjct: 213 GAEHLRQMPKLNTLNINSNSISVEGAKFISEIQS 246


>gi|290993787|ref|XP_002679514.1| predicted protein [Naegleria gruberi]
 gi|284093131|gb|EFC46770.1| predicted protein [Naegleria gruberi]
          Length = 282

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 137/325 (42%), Gaps = 76/325 (23%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           +T LKSL +  + + D G+ ++  L+                   L +LG      L RC
Sbjct: 1   ITTLKSLNLHHNNIEDEGVEFISDLK-------------------LESLG------LCRC 35

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI---------- 191
            L+        KI SLK L+L  N I DEC  +L  LT+LE L+L    I          
Sbjct: 36  ALTSKSTSFLCKITSLKKLDLSENIINDECGFYLSMLTDLEELDLHDNSIEGKCFKEFSS 95

Query: 192 ---------------GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
                           +E ++ L+   +LK L LS   +G S + HLS LTNL+ + L+ 
Sbjct: 96  LKKLKTLKLCQNRISQEEAMIYLSQTVSLKSLNLSQNNIGQSSI-HLSNLTNLKELELNL 154

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I+ G L   + L  L+ L +    +       L+ L  L  L +FG  +  +   ++ 
Sbjct: 155 CKITKGGLSFFSNLKKLEILKISQNSLGYDDFEELSHLVRLRILSIFGCGLEKNSTNFIG 214

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N K LR+LE+    + DAG      L+SL                   SGL  L  L + 
Sbjct: 215 NIKTLRNLEMFSNNIYDAG------LASL-------------------SGLVNLQILKLD 249

Query: 357 NSRITSAGLRHLKPLKNLRSLTLES 381
           ++RIT  G++HL  +K L  L L S
Sbjct: 250 STRITDTGIQHLSQMKELEILRLNS 274



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 122/251 (48%), Gaps = 5/251 (1%)

Query: 58  MKLESLNIKWCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           +KLESL +  C C +T      L  +T+LK L +S + + D    YL  L  L  L+L  
Sbjct: 25  LKLESLGL--CRCALTSKSTSFLCKITSLKKLDLSENIINDECGFYLSMLTDLEELDLHD 82

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHL 175
             +   C    S+L  L  L L + ++S +    + S+  SLK LNL  N I     +HL
Sbjct: 83  NSIEGKCFKEFSSLKKLKTLKLCQNRISQEEAMIYLSQTVSLKSLNLSQNNIGQSS-IHL 141

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
             LTNL+ L L+ C I   GL   + L  L+ L++S   +G      LS L  L  +++ 
Sbjct: 142 SNLTNLKELELNLCKITKGGLSFFSNLKKLEILKISQNSLGYDDFEELSHLVRLRILSIF 201

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
             G+   S   +  + +L++L + +  I D GLA+L+ L  L  L L   RITD+G  +L
Sbjct: 202 GCGLEKNSTNFIGNIKTLRNLEMFSNNIYDAGLASLSGLVNLQILKLDSTRITDTGIQHL 261

Query: 296 RNFKNLRSLEI 306
              K L  L +
Sbjct: 262 SQMKELEILRL 272



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 2/171 (1%)

Query: 50  GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 109
            ++ L   + L+SLN+   N I  S +  LS LTNLK L+++  K+T  G+++   L+KL
Sbjct: 114 AMIYLSQTVSLKSLNLSQNN-IGQSSI-HLSNLTNLKELELNLCKITKGGLSFFSNLKKL 171

Query: 110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            +L +    +     + LS L  L  L++  C L  +       I +L+ L +  N I D
Sbjct: 172 EILKISQNSLGYDDFEELSHLVRLRILSIFGCGLEKNSTNFIGNIKTLRNLEMFSNNIYD 231

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
             L  L GL NL+ L LDS  I D G+ +L+ +  L+ L L+   +G+  L
Sbjct: 232 AGLASLSGLVNLQILKLDSTRITDTGIQHLSQMKELEILRLNSNSLGNETL 282


>gi|291392871|ref|XP_002712822.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryctolagus cuniculus]
          Length = 400

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L++LNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 146 E---VLELGGCSNITNTGLLLIAWGLQRLKTLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 382

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LK+LNL + R ++D G+  L  +T      
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKTLNLRSCRHLSDVGIGHLAGMTRSAAEG 200

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query: 387 NDIKRL 392
           + I R+
Sbjct: 320 DGINRM 325



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L +L+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 167 GLQRLKTLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 222

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 223 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 282

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +   ++  L+ LN+G    
Sbjct: 283 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 342

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 343 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396


>gi|290981112|ref|XP_002673275.1| predicted protein [Naegleria gruberi]
 gi|284086857|gb|EFC40531.1| predicted protein [Naegleria gruberi]
          Length = 461

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 192/424 (45%), Gaps = 37/424 (8%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLE 61
           E LS L  LT L+ R NN I  + +++   + NL  L++++      G+  + + L  L 
Sbjct: 44  ELLSDLKGLTLLNIR-NNRI--ESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLI 100

Query: 62  SLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            LN+  C     +  KP+S  L  LKSL I+ + +   G   +  +++LT L++    + 
Sbjct: 101 YLNVSGCGI---TSCKPISEKLQYLKSLNINRNNLGSKGAQNVAEMKQLTCLSIGNNHIH 157

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
           A     +S L  L  L +N  ++ D G E   K+  L  L++ +N+I +  +V    +TN
Sbjct: 158 AKGALYISRLEKLTALCINGNRIGDVGAEYIIKMKQLTFLDMQYNQI-ENVMVESSEITN 216

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  LNL    I   GLV++T L  LK L L         L  L  + +L+ +++S    +
Sbjct: 217 LTYLNLGYNKITTNGLVSITKLDQLKSLYLHYNYYLDPNL--LERMKHLKKLDIS-KNFT 273

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-------FGAR------- 286
               + +  ++ L SL +    I  TG+ ++T L  LT LD+        GA        
Sbjct: 274 QNEFKSICEMTHLTSLIVPRNSINKTGIQSITELKHLTELDIENNEIGTTGAEKISEMKH 333

Query: 287 ----------ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
                     I   GA ++    NL +L I    +   G K+I  +S LT L +  +  +
Sbjct: 334 LLILKIDYNNICSEGARFISQLPNLTALSIGANNIRTVGAKYIGQMSQLTELRIYSDYEI 393

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 396
            D+ ++ IS LT L  L+++   +T  G + +  LKNL  L         N ++ +  R 
Sbjct: 394 GDEGVKAISRLTRLTKLHINGIGMTDEGAKSILALKNLTWLCAYWPNPYGNQVRNM-LRK 452

Query: 397 LPNL 400
           LP L
Sbjct: 453 LPAL 456



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 158/315 (50%), Gaps = 9/315 (2%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I +  +K LS   NL+ L +  + + D G+  L  L+ LTLLN+    + +  ++S+  +
Sbjct: 14  IGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNNRIES--VESICKM 71

Query: 131 GSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
            +L +LN+ + ++ D G E+ ++ +  L  LN+    IT  C    + L  L+SLN++  
Sbjct: 72  KNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGITS-CKPISEKLQYLKSLNINRN 130

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
            +G +G  N+  +  L CL + +  + + G  ++S L  L ++ ++   I D     +  
Sbjct: 131 NLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCINGNRIGDVGAEYIIK 190

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           +  L  L++   QI +  + + + +T LT+L+L   +IT +G   +     L+SL +   
Sbjct: 191 MKQLTFLDMQYNQIENVMVES-SEITNLTYLNLGYNKITTNGLVSITKLDQLKSLYLHYN 249

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
              D  +  ++ +  L  L++S+  N T    + I  +T L SL V  + I   G++ + 
Sbjct: 250 YYLDPNL--LERMKHLKKLDISK--NFTQNEFKSICEMTHLTSLIVPRNSINKTGIQSIT 305

Query: 370 PLKNLRSLTLESCKV 384
            LK+L  L +E+ ++
Sbjct: 306 ELKHLTELDIENNEI 320



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 11/242 (4%)

Query: 144 SDDGCEK---FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
           SD G E+    S+  +L++LNLG N I DE L  L  L  L  LN+ +  I  E + ++ 
Sbjct: 12  SDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNNRI--ESVESIC 69

Query: 201 GLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL 258
            + NL  L +   ++G  G+  ++  L +L  +N+S  GI+  S + ++  L  LKSLN+
Sbjct: 70  KMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGIT--SCKPISEKLQYLKSLNI 127

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
           +   +   G   +  +  LT L +    I   GA Y+   + L +L I G  + D G ++
Sbjct: 128 NRNNLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCINGNRIGDVGAEY 187

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           I  +  LT L++  N    +  +   S +T L  LN+  ++IT+ GL  +  L  L+SL 
Sbjct: 188 IIKMKQLTFLDMQYNQ--IENVMVESSEITNLTYLNLGYNKITTNGLVSITKLDQLKSLY 245

Query: 379 LE 380
           L 
Sbjct: 246 LH 247



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 7/183 (3%)

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           +LK L+++ + +G+  ++ LS   NLE +NL    I D  L  L+ L  L  LN+   +I
Sbjct: 3   HLKRLDIASSDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNNRI 62

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKD- 321
               + ++  +  LTHL++   RI D G   +  N  +L  L + G G+T    K I + 
Sbjct: 63  --ESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGITSC--KPISEK 118

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           L  L  LN+++N NL  K  + ++ +  L  L++ N+ I + G  ++  L+ L +L +  
Sbjct: 119 LQYLKSLNINRN-NLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCING 177

Query: 382 CKV 384
            ++
Sbjct: 178 NRI 180



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 5/162 (3%)

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           + +L+ ++++ + I +  ++ L+   +L+ LNL    I D GL  L+ L GLT L++   
Sbjct: 1   MKHLKRLDIASSDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNN 60

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELI 344
           RI       +   KNL  L I    + D G++ I ++L+ L  LN+S  C +T     + 
Sbjct: 61  RI--ESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVS-GCGITS-CKPIS 116

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
             L  L SLN++ + + S G +++  +K L  L++ +  + A
Sbjct: 117 EKLQYLKSLNINRNNLGSKGAQNVAEMKQLTCLSIGNNHIHA 158


>gi|148228501|ref|NP_001083845.1| F-box and leucine-rich repeat protein 14 [Xenopus laevis]
 gi|50603939|gb|AAH77430.1| Fbl13 protein [Xenopus laevis]
          Length = 400

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 178/338 (52%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + GL N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGLPNIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRTLN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG    IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQVTDSSLGRIAQYLKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVS 183

Query: 193 DEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+         +L+ L L D Q +    L+H+S GL  L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLSLEQLTLQDCQKLTDLALKHISRGLQGLRVLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ +  L+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTRITKKGLERITQLPCLKVLNLGLWQMTESEKVR 400



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 154/306 (50%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++GL  +ESLN+  C  +TD+ +    +  + +L++L +S C +VTDS +     YLKGL
Sbjct: 86  IQGLPNIESLNLSGCYNLTDNGLGHAFVQEIGSLRTLNLSLCKQVTDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLSDD-------GCEKFSKIGSL 157
           Q   +L L GC        L     L  L  LNL  C+   D       G  + +  G L
Sbjct: 146 Q---VLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GL  L  LNL  C GI D GL++L+ +  L+ L L S
Sbjct: 203 SLEQLTLQDCQKLTDLALKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPC 382

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 123/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++GL N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 86  IQGLPNIESLNLSGCYNLTDNGLGHAFVQEIGSLRTLNLSLCKQVTDSSLGRIA-QYLKG 144

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 145 LQVLELGGCTNITNTGL----LLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEG 200

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
              L  L L    ++TD    ++ R  + LR  +L  CGG ++DAG+ H+  +  L  LN
Sbjct: 201 CLSLEQLTLQDCQKLTDLALKHISRGLQGLRVLNLSFCGG-ISDAGLLHLSHMGGLRSLN 259

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISD 319

Query: 387 NDIKRL 392
           + I R+
Sbjct: 320 DGINRM 325



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 22/232 (9%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L SL+ R    ++  G+   AG+        ++L +L L+ C ++    L ++ +G
Sbjct: 167 GLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLEQLTLQDCQKLTDLALKHISRG 226

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L  L  LN+ +C  I+D+ +  LS +  L+SL + SC  ++D+GI +L  G  +L+ L++
Sbjct: 227 LQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDV 286

Query: 115 EGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEIT 168
             C        SL+ +    Y    L+L  C +SDDG  +  + +  L+ LN+G    IT
Sbjct: 287 SFCDKVGD--QSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRIT 344

Query: 169 DECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           D+ L  + + L+ L  ++L  C  I  +GL  +T L  LK L L   Q+  S
Sbjct: 345 DKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPCLKVLNLGLWQMTES 396


>gi|290991127|ref|XP_002678187.1| predicted protein [Naegleria gruberi]
 gi|284091798|gb|EFC45443.1| predicted protein [Naegleria gruberi]
          Length = 265

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 3/245 (1%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 111
           +K L +L+SL I+    I   D++   G L  L SL IS C  + + G+  ++ L KLT 
Sbjct: 10  MKKLNQLKSLKIR-SKFIFGEDLRSYIGELKQLNSLNISDCINIGNRGVNVIRELDKLTE 68

Query: 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
           L+++ C +       + A+  L  L++N C L   G     K+  +  L +  N I+D  
Sbjct: 69  LHIDNCCIGEKGAKKIGAMQQLRTLSINGCGLGKKGVASVCKLKDMTKLGIRKNHISDSL 128

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
            + +  +T L  L+     IG EG  +++ + NLK L L    +G  G++++SG+  L S
Sbjct: 129 ALEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFNDIGKEGVKYISGMKQLIS 188

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           +N+S   I D  ++ ++ + +L  L++ +  I D G   ++ ++ LT LD+    +T  G
Sbjct: 189 LNISENDIRDKGVKSISEMKNLTCLSVRSNSIGDEGAKYISEMSNLTQLDISCNVLTQKG 248

Query: 292 AAYLR 296
              L+
Sbjct: 249 IKLLQ 253



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 3/209 (1%)

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 232
           +K L  L+SL + S  I  E L +  G L  L  L +SD   +G+ G+  +  L  L  +
Sbjct: 10  MKKLNQLKSLKIRSKFIFGEDLRSYIGELKQLNSLNISDCINIGNRGVNVIRELDKLTEL 69

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
           ++    I +   +K+  +  L++L+++   +   G+A++  L  +T L +    I+DS A
Sbjct: 70  HIDNCCIGEKGAKKIGAMQQLRTLSINGCGLGKKGVASVCKLKDMTKLGIRKNHISDSLA 129

Query: 293 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
             +     L  L+     +   G K I  +++L  L L  N ++  + ++ ISG+  L+S
Sbjct: 130 LEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFN-DIGKEGVKYISGMKQLIS 188

Query: 353 LNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           LN+S + I   G++ +  +KNL  L++ S
Sbjct: 189 LNISENDIRDKGVKSISEMKNLTCLSVRS 217



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 5/117 (4%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I     K +S +TNLK+L +  + +   G+ Y+ G+++L  LN+    +    + S+S
Sbjct: 146 NDIGPEGAKSISQMTNLKTLLLDFNDIGKEGVKYISGMKQLISLNISENDIRDKGVKSIS 205

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
            + +L  L++    + D+G +  S++ +L  L++  N +T + +  L+     ESLN
Sbjct: 206 EMKNLTCLSVRSNSIGDEGAKYISEMSNLTQLDISCNVLTQKGIKLLQ-----ESLN 257


>gi|290991518|ref|XP_002678382.1| predicted protein [Naegleria gruberi]
 gi|284091994|gb|EFC45638.1| predicted protein [Naegleria gruberi]
          Length = 344

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 159/362 (43%), Gaps = 51/362 (14%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           NN IT++G + F  L  L+KLD+       GG                    I D  MK 
Sbjct: 11  NNPITSKGAEYFTNLKQLIKLDI-------GGTE------------------IGDEGMKS 45

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           +  +  L  L++  +K+ D GI  L  L   LT L +    +      +L  L  L YL+
Sbjct: 46  IGKMKQLTKLEMCGNKIGDEGIKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLD 105

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           + + +L + G ++ S++  L  L +  N I DE    +  +  L  L +    IGD G +
Sbjct: 106 IRKNKLGNQGAKEISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAI 165

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
           +++ L +LK L +  T V + G++ +  +  L  +++    +    ++ +  L+ L  L 
Sbjct: 166 SVSQLRHLKTLCIQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLL 225

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
           +   QI D+G   ++ L  LT+L ++ + I   GA  L   KNL                
Sbjct: 226 ISDNQIGDSGAKIISELNQLTNLRIYDSNIGIEGAKSLSGMKNL---------------- 269

Query: 318 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
                   T LNLS N  + +K LE ISG+  L  L+V +  I   G ++L  + NLR L
Sbjct: 270 --------TKLNLSGN-KIGNKGLEAISGMLQLQKLSVIHCEIGDEGAKYLLNMPNLRKL 320

Query: 378 TL 379
            +
Sbjct: 321 YI 322



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 8/283 (2%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           + + T LN+   P+T+   +  + L  L  L++   ++ D+G +   K+  L  L +  N
Sbjct: 1   MTQFTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEMCGN 60

Query: 166 EITDECLVHLKGLTNLES----LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
           +I DE    +K L+NL S    L +    IG EG   L  L  L  L++   ++G+ G +
Sbjct: 61  KIGDEG---IKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAK 117

Query: 222 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
            +S L  L  + +    I D   + +  + +L  L +    I D G  +++ L  L  L 
Sbjct: 118 EISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLC 177

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
           +    +   G   + N K L  L I    L    +K I  L+ LT L +S N  + D   
Sbjct: 178 IQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDN-QIGDSGA 236

Query: 342 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           ++IS L  L +L + +S I   G + L  +KNL  L L   K+
Sbjct: 237 KIISELNQLTNLRIYDSNIGIEGAKSLSGMKNLTKLNLSGNKI 279



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 147/320 (45%), Gaps = 4/320 (1%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           +T    L +  + +T  G  Y   L++L  L++ G  +    + S+  +  L  L +   
Sbjct: 1   MTQFTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEMCGN 60

Query: 142 QLSDDGCEKFSKI-GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
           ++ D+G +  S +  SL  L +  N I  E    LK LT L  L++    +G++G   ++
Sbjct: 61  KIGDEGIKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAKEIS 120

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
            L  L  L +    +G  G + +  +  L  + +S   I DG    ++ L  LK+L +  
Sbjct: 121 ELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLCIQW 180

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
             +   G+ A+ ++  LT L +   ++       +     L  L I    + D+G K I 
Sbjct: 181 TNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDNQIGDSGAKIIS 240

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
           +L+ LT L +  + N+  +  + +SG+  L  LN+S ++I + GL  +  +  L+ L++ 
Sbjct: 241 ELNQLTNLRIY-DSNIGIEGAKSLSGMKNLTKLNLSGNKIGNKGLEAISGMLQLQKLSVI 299

Query: 381 SCKVTANDIKRLQSRDLPNL 400
            C++     K L   ++PNL
Sbjct: 300 HCEIGDEGAKYL--LNMPNL 317


>gi|397499401|ref|XP_003820442.1| PREDICTED: F-box/LRR-repeat protein 14 [Pan paniscus]
          Length = 561

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 179/335 (53%), Gaps = 48/335 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHA----------------------FVQEIGSLRALN 283

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 284 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 343

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 344 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 403

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 404 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 462

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 463 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 522

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           +   +RIT  GL  +  L  L+ L L   ++T ++
Sbjct: 523 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 557



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 305

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 306 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 362

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 363 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 422

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 423 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 482

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 483 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 542

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 543 LKVLNL 548



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 304

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 305 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 360

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 361 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 419

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 420 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 479

Query: 387 NDIKRL 392
           + I R+
Sbjct: 480 DGINRM 485



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 327 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 382

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 383 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 442

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLGF-NE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +   ++  L+ LN+G    
Sbjct: 443 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 502

Query: 167 ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 503 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 556


>gi|218196286|gb|EEC78713.1| hypothetical protein OsI_18882 [Oryza sativa Indica Group]
          Length = 601

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 181/424 (42%), Gaps = 59/424 (13%)

Query: 21  AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 79
           A+ A+ +        L  L L  C  ++   V  L G+  L+ L++  C+ I+D+ +K +
Sbjct: 82  AVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMSTLKELDLSRCSKISDAGIKHI 141

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           + + +L+ L +S + +TD+G+  +  L  L LL+L G   T   L SL  L  L +L++ 
Sbjct: 142 ASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIW 201

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEIT-------------DECLVH------LKGLTN 180
             +++++G        SL  LN+ +  +T               C +H       + L +
Sbjct: 202 GSEITNEGASVLIAFTSLSFLNISWTRVTCLPILLTLRCLNMSNCTIHSICNGEFQVLIH 261

Query: 181 LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           LE L + +   G  DE   ++    +L  L++S     SS L  L  + NLE ++LS++ 
Sbjct: 262 LEKLVISAASFGNIDEVFSSILP-SSLTYLDMSS--CSSSNLYFLGNMRNLEHLDLSYSR 318

Query: 239 ISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLR 296
           I   ++  +A +  +L  L+L   ++T   L  L  ++  LT L L   +I DS   Y+ 
Sbjct: 319 IISDAIEYIANIGMNLMFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSALLYIS 378

Query: 297 NFKNLRSLEI---CGGGLTDAGVKHIKDLSSLTLLNLSQNCN------------------ 335
              +LR L +   C  G        +  LS+L  L   ++ N                  
Sbjct: 379 MMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELKYLESLNLNNTQLMDDVIPPLASFR 438

Query: 336 -----------LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
                      L+D  L  +S  + L+ L    + +++ GLR   P   LR L L  C +
Sbjct: 439 ALKYLFLKSDFLSDPALHALSSASNLIHLGFCGNILSTTGLRKFVPPATLRMLDLSGCWI 498

Query: 385 TAND 388
              D
Sbjct: 499 LTGD 502



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 2/152 (1%)

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 220
           G   +  E L +L     L  L L  C  +    +  L+G+  LK L+LS  +++  +G+
Sbjct: 79  GHIAVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMSTLKELDLSRCSKISDAGI 138

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           +H++ + +LE +++S TG++D  +  ++ L +L+ L+L   + TD  L +L  LT L HL
Sbjct: 139 KHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHL 198

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           D++G+ IT+ GA+ L  F +L  L I    +T
Sbjct: 199 DIWGSEITNEGASVLIAFTSLSFLNISWTRVT 230


>gi|326427049|gb|EGD72619.1| hypothetical protein PTSG_04354 [Salpingoeca sp. ATCC 50818]
          Length = 1165

 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 172/375 (45%), Gaps = 66/375 (17%)

Query: 60   LESLNIKWCNCITDSDMKPL-SGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 117
            ++ L  +    +TD+ ++ L +    L  L+I  C  +T  GIA LKG   L  L+L G 
Sbjct: 767  IQHLAFRSSVVVTDAFLRVLGTQFPTLYELEIYDCPMLTFRGIAALKGAPNLASLHLSGA 826

Query: 118  PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 177
              T +C+D+L +L  L + +LN  ++S    ++F++  S                     
Sbjct: 827  -FTDSCVDALMSLHPLEHFSLNGARVS---SQQFARFLSSPT------------------ 864

Query: 178  LTNLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
             T+L+SL L SC   D+G L ++ GL +L  L LS T V + G   L+ L +L S+NLS+
Sbjct: 865  ATHLQSLALTSCPALDDGILPSICGLTDLGHLSLSKTPVRAVG--QLASLPHLYSLNLSY 922

Query: 237  T------------------------GISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAAL 271
            T                         +S  +    AG  SL  L L +R    D  LA +
Sbjct: 923  TRASEREVGALAAATNMTTLGLFGLNLSSDAYAPWAGHGSLAELTLSSRDSFDDACLAHV 982

Query: 272  TSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK--DLSSLTLL 328
             +LT +T LDL G  ++T  G   +   + L+SL +    LTDA + HI    L SL   
Sbjct: 983  CTLTHVTTLDLSGYYQLTPDGLKAIAAMQQLQSLSLSNTALTDAALLHIGGVGLPSLDTF 1042

Query: 329  NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN---LRSLTLESCKVT 385
            ++S+  ++TD       G   +  LN+S +RIT+    H   L +   L++L++E    +
Sbjct: 1043 DISRT-DVTDACAPAFKGFAAVARLNLSRTRITNTFF-HAHALNDCAALQTLSIERTHTS 1100

Query: 386  A------NDIKRLQS 394
                   N + RLQS
Sbjct: 1101 TKGLAELNGLSRLQS 1115



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 30/275 (10%)

Query: 60   LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
            L+SL +  C  + D  +  + GLT+L  L +S + V    +  L  L  L  LNL     
Sbjct: 868  LQSLALTSCPALDDGILPSICGLTDLGHLSLSKTPV--RAVGQLASLPHLYSLNLSYTRA 925

Query: 120  TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGL 178
            +   + +L+A  ++  L L    LS D    ++  GSL  L L   +   D CL H+  L
Sbjct: 926  SEREVGALAAATNMTTLGLFGLNLSSDAYAPWAGHGSLAELTLSSRDSFDDACLAHVCTL 985

Query: 179  TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            T++ +L+L        G   LT                  GL+ ++ +  L+S++LS T 
Sbjct: 986  THVTTLDLS-------GYYQLT----------------PDGLKAIAAMQQLQSLSLSNTA 1022

Query: 239  ISDGSLRKL--AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS--GAAY 294
            ++D +L  +   GL SL + ++    +TD    A      +  L+L   RIT++   A  
Sbjct: 1023 LTDAALLHIGGVGLPSLDTFDISRTDVTDACAPAFKGFAAVARLNLSRTRITNTFFHAHA 1082

Query: 295  LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
            L +   L++L I     +  G+  +  LS L  +N
Sbjct: 1083 LNDCAALQTLSIERTHTSTKGLAELNGLSRLQSVN 1117



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 22/261 (8%)

Query: 32   GLINLVKLDLERCT-RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 90
            GL +L  L L +   R  G L +L  L    SLN+ +    ++ ++  L+  TN+ +L +
Sbjct: 889  GLTDLGHLSLSKTPVRAVGQLASLPHLY---SLNLSYTRA-SEREVGALAAATNMTTLGL 944

Query: 91   SCSKVTDSGIAYLKG---LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSDD 146
                ++    A   G   L +LTL + +      ACL  +  L  +  L+L+   QL+ D
Sbjct: 945  FGLNLSSDAYAPWAGHGSLAELTLSSRDS--FDDACLAHVCTLTHVTTLDLSGYYQLTPD 1002

Query: 147  GCEKFSKIGSLKVLNLGFNEITDECLVHLKG--LTNLESLNLDSCGIGDEGLVNLTGLCN 204
            G +  + +  L+ L+L    +TD  L+H+ G  L +L++ ++    + D       G   
Sbjct: 1003 GLKAIAAMQQLQSLSLSNTALTDAALLHIGGVGLPSLDTFDISRTDVTDACAPAFKGFAA 1062

Query: 205  LKCLELSDTQVGSSGLRHLSGLTN---LESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
            +  L LS T++ ++   H   L +   L+++++  T  S   L +L GLS L+S+N    
Sbjct: 1063 VARLNLSRTRITNTFF-HAHALNDCAALQTLSIERTHTSTKGLAELNGLSRLQSVNARHT 1121

Query: 262  QITDTGL-AALTSLTGLTHLD 281
             ++ T + AAL S+    H+D
Sbjct: 1122 WVSPTKIPAALPSV----HVD 1138



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 15/259 (5%)

Query: 7    GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 66
            GL++L  LS  +   + A G    A L +L  L+L         +  L     + +L + 
Sbjct: 889  GLTDLGHLSLSKT-PVRAVGQ--LASLPHLYSLNLSYTRASEREVGALAAATNMTTLGLF 945

Query: 67   WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IAYLKGLQKLTLLNLEGC-PVTAACL 124
              N  +D+   P +G  +L  L +S     D   +A++  L  +T L+L G   +T   L
Sbjct: 946  GLNLSSDA-YAPWAGHGSLAELTLSSRDSFDDACLAHVCTLTHVTTLDLSGYYQLTPDGL 1004

Query: 125  DSLSALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLE 182
             +++A+  L  L+L+   L+D        +G  SL   ++   ++TD C    KG   + 
Sbjct: 1005 KAIAAMQQLQSLSLSNTALTDAALLHIGGVGLPSLDTFDISRTDVTDACAPAFKGFAAVA 1064

Query: 183  SLNLDSCGIGDEGLVN--LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
             LNL    I +       L     L+ L +  T   + GL  L+GL+ L+S+N   T +S
Sbjct: 1065 RLNLSRTRITNTFFHAHALNDCAALQTLSIERTHTSTKGLAELNGLSRLQSVNARHTWVS 1124

Query: 241  DGSLRKLAGLSSLKSLNLD 259
               +      ++L S+++D
Sbjct: 1125 PTKI-----PAALPSVHVD 1138


>gi|320169501|gb|EFW46400.1| tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864]
          Length = 1286

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 161/380 (42%), Gaps = 26/380 (6%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 65
           SG+ N T+  +  NN IT+    AF GL  L  L      +++G                
Sbjct: 57  SGIPNTTTQLYLNNNQITSIPTSAFPGLTVLQIL------QVYG---------------- 94

Query: 66  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 125
              N IT       +GLT + SLQ++ +++TD       GL  L+ L L    +++    
Sbjct: 95  ---NQITYIPADAFTGLTAVISLQLNNNRLTDISANAFTGLSALSQLFLNNNRLSSVPAG 151

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           + + L +L  L LN  +++      F+ + +L  L L FN+IT         LT L  L 
Sbjct: 152 AFAGLPALKQLQLNSNRITSISATLFTGLTALTWLRLEFNQITSIPASVFTDLTGLSVLV 211

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           L S  I        TGL  L  +++S   + S      +GLT    ++L    I+  S  
Sbjct: 212 LRSNNITSIPPYAFTGLTALSQIDVSINLITSIPAFAFAGLTAATYLDLYINQITSISDS 271

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
              GL++L  LN+D  ++T         LT L +L L+  ++T            L SL+
Sbjct: 272 AFTGLTALTFLNMDNNRLTSILSTTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQ 331

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
           +    +T        DLS L  L+L+ N  +T       + LT L  L++ N+RITS   
Sbjct: 332 LYDNQITSIPANAFDDLSVLNTLSLNDNL-ITSVPASAFANLTSLQYLSLFNNRITSIAA 390

Query: 366 RHLKPLKNLRSLTLESCKVT 385
                L  L SL L + ++T
Sbjct: 391 NAFDDLTALGSLHLHTNRIT 410



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 173/386 (44%), Gaps = 7/386 (1%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKL 60
           +  +GL+ + SL    NN +T     AF GL  L +L L   R + +  G     GL  L
Sbjct: 103 DAFTGLTAVISLQLN-NNRLTDISANAFTGLSALSQLFLNNNRLSSVPAGA--FAGLPAL 159

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           + L +   N IT       +GLT L  L++  +++T    +    L  L++L L    +T
Sbjct: 160 KQLQLN-SNRITSISATLFTGLTALTWLRLEFNQITSIPASVFTDLTGLSVLVLRSNNIT 218

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
           +    + + L +L  ++++   ++      F+ + +   L+L  N+IT        GLT 
Sbjct: 219 SIPPYAFTGLTALSQIDVSINLITSIPAFAFAGLTAATYLDLYINQITSISDSAFTGLTA 278

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  LN+D+  +         GL  L+ L L   QV S      +GLT L S+ L    I+
Sbjct: 279 LTFLNMDNNRLTSILSTTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQLYDNQIT 338

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
                    LS L +L+L+   IT    +A  +LT L +L LF  RIT   A    +   
Sbjct: 339 SIPANAFDDLSVLNTLSLNDNLITSVPASAFANLTSLQYLSLFNNRITSIAANAFDDLTA 398

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L SL +    +T+        LS+LT L+L  N ++T  +    S L+ +  + + +++I
Sbjct: 399 LGSLHLHTNRITNIPSTAFASLSALTQLHLYNN-SITSISAGTFSSLSAVTYMYMYDNQI 457

Query: 361 TSAGLRHLKPLKNLRSLTLESCKVTA 386
           +S        + +L+ L L   ++T+
Sbjct: 458 SSIPANTFTGMTSLKLLYLSGNQITS 483



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 147/363 (40%), Gaps = 37/363 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
            +GL+  T L    N  IT+    AF GL  L  L+++  R T I        GL  L+ 
Sbjct: 249 FAGLTAATYLDLYINQ-ITSISDSAFTGLTALTFLNMDNNRLTSILS--TTFAGLTALQY 305

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L + W N +T       +GLT L SLQ+  +++T                      + A 
Sbjct: 306 LYL-WSNQVTSIAPNTFAGLTALNSLQLYDNQITS---------------------IPAN 343

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             D LS L +   L+LN   ++      F+ + SL+ L+L  N IT         LT L 
Sbjct: 344 AFDDLSVLNT---LSLNDNLITSVPASAFANLTSLQYLSLFNNRITSIAANAFDDLTALG 400

Query: 183 SLNLDS---CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           SL+L +     I      +L+ L  L     S T + +     LS +T +   +     I
Sbjct: 401 SLHLHTNRITNIPSTAFASLSALTQLHLYNNSITSISAGTFSSLSAVTYMYMYD---NQI 457

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           S        G++SLK L L   QIT     A + LT LT L L+  RIT   AA      
Sbjct: 458 SSIPANTFTGMTSLKLLYLSGNQITSVSANAFSGLTALTQLSLYLNRITSISAAAFPGLT 517

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
            L +L +    ++        DL+ L  L L  N  +T        GL  L +L + N+ 
Sbjct: 518 ALLTLSLSDNQISSIPSSAFTDLTLLKFLYLYNN-QITSIAANAFVGLPALSTLLLHNNT 576

Query: 360 ITS 362
           ITS
Sbjct: 577 ITS 579



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 139/329 (42%), Gaps = 2/329 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            +GL+ LT L    N  IT+     F  L  L  L L              GL  L  ++
Sbjct: 177 FTGLTALTWLRLEFNQ-ITSIPASVFTDLTGLSVLVLRSNNITSIPPYAFTGLTALSQID 235

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N IT       +GLT    L +  +++T    +   GL  LT LN++   +T+   
Sbjct: 236 VS-INLITSIPAFAFAGLTAATYLDLYINQITSISDSAFTGLTALTFLNMDNNRLTSILS 294

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            + + L +L YL L   Q++      F+ + +L  L L  N+IT         L+ L +L
Sbjct: 295 TTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQLYDNQITSIPANAFDDLSVLNTL 354

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           +L+   I          L +L+ L L + ++ S        LT L S++L    I++   
Sbjct: 355 SLNDNLITSVPASAFANLTSLQYLSLFNNRITSIAANAFDDLTALGSLHLHTNRITNIPS 414

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
              A LS+L  L+L    IT       +SL+ +T++ ++  +I+   A       +L+ L
Sbjct: 415 TAFASLSALTQLHLYNNSITSISAGTFSSLSAVTYMYMYDNQISSIPANTFTGMTSLKLL 474

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            + G  +T         L++LT L+L  N
Sbjct: 475 YLSGNQITSVSANAFSGLTALTQLSLYLN 503


>gi|395845618|ref|XP_003795524.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 3 [Otolemur
           garnettii]
          Length = 387

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 108/324 (33%), Positives = 173/324 (53%), Gaps = 48/324 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSL 377
           +   +RIT  GL  +  L  L+ L
Sbjct: 363 LYGCTRITKRGLERITQLPCLKRL 386



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/265 (33%), Positives = 139/265 (52%), Gaps = 30/265 (11%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 146 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSG 291
             +   + GL  L++    RITD G
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKG 347



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query: 387 NDIKRL 392
           + I R+
Sbjct: 320 DGINRM 325



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 26/222 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 167 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 222

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 223 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 282

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +   ++  L+ LN+G    
Sbjct: 283 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 342

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLK 206
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK
Sbjct: 343 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLK 384


>gi|327272147|ref|XP_003220847.1| PREDICTED: f-box/LRR-repeat protein 14-like [Anolis carolinensis]
          Length = 400

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 108/315 (34%), Positives = 172/315 (54%), Gaps = 26/315 (8%)

Query: 103 LKGLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSL 157
           ++G+ ++  LNL GC  +T   L    ++ + SL  LNL+ C Q++D    + ++ +  L
Sbjct: 86  IQGMAEIESLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 158 KVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN--------LK 206
           + L LG  + IT+  L+ +  GL  L+SLNL SC  + D G+ +L G+          L+
Sbjct: 146 EALELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 207 CLELSDTQVGSS-GLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQ 262
            L L D Q  S   L+HLS GL+ L  +NLSF G ISD  L  L+ +S L+ LNL +   
Sbjct: 206 QLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGGISDAGLLHLSHMSCLRVLNLRSCDN 265

Query: 263 ITDTGLAAL-TSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KH 318
           I+DTG+  L T    L+ LD+ F  ++ D   AY+ +    LRSL +C   ++D G+ + 
Sbjct: 266 ISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRM 325

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRS 376
           ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++   +RIT  GL  +  L  L+ 
Sbjct: 326 VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKV 385

Query: 377 LTLESCKVTANDIKR 391
           L L   ++T ++  R
Sbjct: 386 LNLGLWQMTESEKVR 400



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 159/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+ ++ESLN+  C  +TD+ +    ++ +++L++L +S C ++TDS +     YLKGL
Sbjct: 86  IQGMAEIESLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +    L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 146 EA---LELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   ++D  L HL +GL+ L  LNL  C GI D GL++L+ +  L+ L L S
Sbjct: 203 GLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGGISDAGLLHLSHMSCLRVLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  L+SL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 382

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+  +ESLNL  C      G+G   +  ++ L  L    C +++D+ +G    ++L G
Sbjct: 86  IQGMAEIESLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRIA-QYLKG 144

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 145 LEALELGGCSNITNTGL----LLVAWGLPRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    +++D    +L R    LR L +  CGG ++DAG+ H+  +S L +LN
Sbjct: 201 CLGLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGG-ISDAGLLHLSHMSCLRVLN 259

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L +G   L  L+VS   ++    L ++ + L  LRSL+L SC ++ 
Sbjct: 260 LRSCDNISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISD 319

Query: 387 NDIKRL 392
             I R+
Sbjct: 320 EGINRM 325



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 18/230 (7%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C ++    L +L +G
Sbjct: 167 GLPRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLSRG 226

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L +L  LN+ +C  I+D+ +  LS ++ L+ L + SC  ++D+GI +L  G  +L+ L++
Sbjct: 227 LSRLRQLNLSFCGGISDAGLLHLSHMSCLRVLNLRSCDNISDTGIMHLATGSLRLSGLDV 286

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDE 170
             C  V    L  ++  L  L  L+L  C +SD+G  +  + +  L+ LN+G    ITD+
Sbjct: 287 SFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDK 346

Query: 171 CLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
            L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 347 GLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTES 396


>gi|332661885|ref|YP_004451355.1| small GTP-binding protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332337382|gb|AEE54482.1| small GTP-binding protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 1141

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 122/216 (56%), Gaps = 16/216 (7%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           SD+  L+ L NL SL +S ++V+D  ++ L  L  L+ L+L    V+   L +LSAL +L
Sbjct: 259 SDLSVLAHLHNLSSLHLSYTQVSD--LSALSALSNLSFLDLSDTQVSD--LSALSALYNL 314

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
            +LNL+  Q+SD        + +L +++L   E+TD  L  L+ L NL S+NL+     D
Sbjct: 315 SFLNLSNTQISD--LSALRHLLNLSIIDLSSTELTD--LTTLRHLQNLNSINLNKTHASD 370

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
             L  L+ L NL  L LSDTQ  +S L  LS L NL S+NLS+T +S   L  LA L +L
Sbjct: 371 --LSALSNLSNLSELYLSDTQ--ASDLSALSALFNLNSLNLSYTQVS--GLSALANLQNL 424

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
            SL+L   ++ D  L+ L +L  L+ LDL    + D
Sbjct: 425 SSLDLGDTEVFD--LSPLANLQNLSSLDLSDTEVVD 458



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 165/367 (44%), Gaps = 83/367 (22%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD------------- 73
           +   + LI L  ++L R TR+   LV L  L  L  L++ +   +TD             
Sbjct: 129 LYPLSNLIYLKHINLSR-TRL-PNLVTLGHLSNLSFLDLSYTQ-VTDLSDLSTLSNLNSL 185

Query: 74  -------SDMKPLSGLTNLKSLQISCSKVTD----------------------------- 97
                  SD+  LS L+NL  L +S ++V+D                             
Sbjct: 186 NLSDTQVSDLDALSALSNLSFLDLSFTQVSDLSGLSTLSNLSSLNLRDTYSSDLRSLRPL 245

Query: 98  -------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
                        S ++ L  L  L+ L+L    V+   L +LSAL +L +L+L+  Q+S
Sbjct: 246 INLSDLKLSSTEVSDLSVLAHLHNLSSLHLSYTQVSD--LSALSALSNLSFLDLSDTQVS 303

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
           D      S + +L  LNL   +I+D  L  L+ L NL  ++L S  + D  L  L  L N
Sbjct: 304 D--LSALSALYNLSFLNLSNTQISD--LSALRHLLNLSIIDLSSTELTD--LTTLRHLQN 357

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           L  + L+ T   +S L  LS L+NL  + LS T  SD  L  L+ L +L SLNL   Q+ 
Sbjct: 358 LNSINLNKTH--ASDLSALSNLSNLSELYLSDTQASD--LSALSALFNLNSLNLSYTQV- 412

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 324
            +GL+AL +L  L+ LDL    + D     L N +NL SL++    + D  +  + +LS 
Sbjct: 413 -SGLSALANLQNLSSLDLGDTEVFDLSP--LANLQNLSSLDLSDTEVVD--LSPMINLSK 467

Query: 325 LTLLNLS 331
           L  LNLS
Sbjct: 468 LKYLNLS 474



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 43/215 (20%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +LS LS L +LSF   +      + A   L+NL  +DL   T +   L  L+ L  L S+
Sbjct: 304 DLSALSALYNLSFLNLSNTQISDLSALRHLLNLSIIDLS-STEL-TDLTTLRHLQNLNSI 361

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           N+   N    SD+  LS L+NL  L +S ++ +D                          
Sbjct: 362 NL---NKTHASDLSALSNLSNLSELYLSDTQASD-------------------------- 392

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L +LSAL +L  LNL+  Q+S  G    + + +L  L+LG  E+ D     L  L NL+ 
Sbjct: 393 LSALSALFNLNSLNLSYTQVS--GLSALANLQNLSSLDLGDTEVFD-----LSPLANLQ- 444

Query: 184 LNLDSCGIGDEGLVNLTGLCN---LKCLELSDTQV 215
            NL S  + D  +V+L+ + N   LK L LS T +
Sbjct: 445 -NLSSLDLSDTEVVDLSPMINLSKLKYLNLSSTPI 478


>gi|417399805|gb|JAA46888.1| Putative f-box/lrr-repeat protein 14 [Desmodus rotundus]
          Length = 368

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 179/339 (52%), Gaps = 50/339 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           + G+ N++SL +S C  +TD+G+  A+++ +  L  LNL  C                  
Sbjct: 54  IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCK----------------- 96

Query: 136 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 191
                 Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 97  ------QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHL 150

Query: 192 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 240
            D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G IS
Sbjct: 151 SDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGIS 210

Query: 241 DGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL- 295
           D  L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ 
Sbjct: 211 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIA 269

Query: 296 RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSL 353
           +    L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  +
Sbjct: 270 QGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGI 329

Query: 354 NVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           ++   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 330 DLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 368



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 159/306 (51%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  +ESLN+  C  +TD+ +    +  +++L++L +S C ++TDS +     YLKGL
Sbjct: 54  IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGL 113

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSL 157
           +   +L L GC        L     L  L  LNL  C+ LSD G    + +      G L
Sbjct: 114 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 170

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S
Sbjct: 171 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 230

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 231 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 290

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 291 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 350

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 351 LKVLNL 356



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  ++ L  L    C +++D+ +G    ++L G
Sbjct: 54  IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIA-QYLKG 112

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 113 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 168

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 169 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 227

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 228 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 287

Query: 387 NDIKRL 392
           + I R+
Sbjct: 288 DGINRM 293



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 18/230 (7%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C ++    L ++ +G
Sbjct: 135 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRG 194

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+ L++
Sbjct: 195 LTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDV 254

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNEITDE 170
             C  V    L  ++  L  L  L+L  C +SDDG  +   ++  L+ LN+G    ITD+
Sbjct: 255 SFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDK 314

Query: 171 CLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
            L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 315 GLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 364


>gi|255525367|ref|ZP_05392306.1| putative cell wall binding repeat 2-containing protein [Clostridium
           carboxidivorans P7]
 gi|296187977|ref|ZP_06856369.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
 gi|255510938|gb|EET87239.1| putative cell wall binding repeat 2-containing protein [Clostridium
           carboxidivorans P7]
 gi|296047103|gb|EFG86545.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
          Length = 660

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 157/296 (53%), Gaps = 23/296 (7%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +++SGL NLT+L            +     L NL KL+L RC ++   +  LK L  L++
Sbjct: 374 KDISGLENLTNLQILALTDTEVSDLSPLKNLTNLQKLNL-RCAQV-SDISPLKYLTNLQN 431

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+ WC  +  SD+ PL  LTNL+ L +   +++D+  + LK L  L  L+L+   V+  
Sbjct: 432 LNL-WCAQV--SDISPLKDLTNLQKLDLHIPQISDT--SALKNLTNLQQLSLQYTQVSH- 485

Query: 123 CLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
            ++ L  L +L  LNL+R Q+SD  G +  + +  L + N   + I+      LK LTNL
Sbjct: 486 -INGLENLTNLQQLNLDRTQVSDISGLKDLTNLQKLNLNNNQVSNIS-----PLKYLTNL 539

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           + L+L S  + D  +  L  L NL+ L+L++ QV  S +  L  LTNL+ + L+   ISD
Sbjct: 540 QELDLSSNQVSD--ISPLKYLTNLQKLDLNNNQV--SDVSPLKYLTNLQDLLLNVNQISD 595

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
             +  L  L +L+ L L   QI+D  ++ L  L  L  L+L   +++D+    L+N
Sbjct: 596 --ISPLKDLINLQGLYLGINQISD--ISPLKYLINLRELNLKHTQVSDADKQSLKN 647



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 162/342 (47%), Gaps = 59/342 (17%)

Query: 19  NNAITAQGM---KAFAGLIN-----LVKLDLERCTRI-------HGGLVNLKGLMKLESL 63
           NN +T +     KA    IN     L+K D+ + T +       H  + ++ GL  L +L
Sbjct: 326 NNIVTFKDKNLEKAIRATINKPTGELLKSDVNQITELDVSIINEHTDIKDISGLENLTNL 385

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAA 122
            I        SD+ PL  LTNL+ L + C++V+D S + YL  LQ L L     C    +
Sbjct: 386 QILALTDTEVSDLSPLKNLTNLQKLNLRCAQVSDISPLKYLTNLQNLNLW----C-AQVS 440

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG---LT 179
            +  L  L +L  L+L+  Q+SD    K   + +L+ L+L + +++     H+ G   LT
Sbjct: 441 DISPLKDLTNLQKLDLHIPQISDTSALK--NLTNLQQLSLQYTQVS-----HINGLENLT 493

Query: 180 NLESLNLDSCGIGD--------------------EGLVNLTGLCNLKCLELSDTQVGSSG 219
           NL+ LNLD   + D                      +  L  L NL+ L+LS  QV  S 
Sbjct: 494 NLQQLNLDRTQVSDISGLKDLTNLQKLNLNNNQVSNISPLKYLTNLQELDLSSNQV--SD 551

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
           +  L  LTNL+ ++L+   +SD S   L  L++L+ L L+  QI+D  ++ L  L  L  
Sbjct: 552 ISPLKYLTNLQKLDLNNNQVSDVS--PLKYLTNLQDLLLNVNQISD--ISPLKDLINLQG 607

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           L L   +I+D   + L+   NLR L +    ++DA  + +K+
Sbjct: 608 LYLGINQISD--ISPLKYLINLRELNLKHTQVSDADKQSLKN 647



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 24/226 (10%)

Query: 164 FNEITD-ECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGL--CNLKCLELSDTQVGSSG 219
            NE TD + +  L+ LTNL+ L L    + D   L NLT L   NL+C ++SD       
Sbjct: 367 INEHTDIKDISGLENLTNLQILALTDTEVSDLSPLKNLTNLQKLNLRCAQVSD------- 419

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
           +  L  LTNL+++NL    +SD  +  L  L++L+ L+L   QI+DT  +AL +LT L  
Sbjct: 420 ISPLKYLTNLQNLNLWCAQVSD--ISPLKDLTNLQKLDLHIPQISDT--SALKNLTNLQQ 475

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L L   +++      L N  NL+ L +    ++D  +  +KDL++L         N    
Sbjct: 476 LSLQYTQVSHING--LENLTNLQQLNLDRTQVSD--ISGLKDLTNLQ---KLNLNNNQVS 528

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
            +  +  LT L  L++S+++++   +  LK L NL+ L L + +V+
Sbjct: 529 NISPLKYLTNLQELDLSSNQVSD--ISPLKYLTNLQKLDLNNNQVS 572


>gi|320163275|gb|EFW40174.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 989

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 173/335 (51%), Gaps = 13/335 (3%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L+ L+I+    +T   +  ++GL NL+ L +  +++ D  +  +  L  LT+LNLE   +
Sbjct: 514 LQELSIRSAEFVTHVGINHIAGLNNLRVLDLGITRLNDQAMPTISQL-PLTVLNLERTLI 572

Query: 120 TAACLDSLSALGS-LFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 177
           T + L  L+ LG+ L +L+++ C +L++ G    +    L+ L +    +TD  +  L  
Sbjct: 573 TDSGLARLAPLGATLQHLDISDCSKLTERGLALLAAFPQLRTLAIAGLPLTD--VGRLSN 630

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SF 236
              L SLNL    I +  L ++    +L  L L++T++G + +R+L  LTNL S+ L S 
Sbjct: 631 FPELRSLNLARTAIVEGKLDSIRRYIHLVHLSLANTKLGDNDVRYLQYLTNLSSLKLPSR 690

Query: 237 TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTG-LTHLDLFGARITDSGAAY 294
             I + S+  ++ L  L  L+L D   +TD G+  +++L   L  L L   ++T +G   
Sbjct: 691 FQIGNSSIAHISKL-PLTELDLTDYIHVTDEGIQFISALAPTLVSLSLSNTKLTSAGIPA 749

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE--LISGLTGLVS 352
           +     L  L++    L D  +  +  L+ L  L+LS+  +LT   +     S  T L S
Sbjct: 750 VAACTKLEVLQLDRTPLKDDVIPLLAPLTRLRTLSLSR-THLTSAVVRSGAFSPFTRLES 808

Query: 353 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387
           LN+S + I + GL  L+ L  L +L L+S +VTAN
Sbjct: 809 LNLSWTFIENQGLDQLR-LPMLTTLNLDSTRVTAN 842



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 159/329 (48%), Gaps = 17/329 (5%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 70
           L  LS R    +T  G+   AGL NL  LDL   TR++   +     + L  LN++    
Sbjct: 514 LQELSIRSAEFVTHVGINHIAGLNNLRVLDLG-ITRLNDQAMPTISQLPLTVLNLERT-L 571

Query: 71  ITDSDMKPLSGL-TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           ITDS +  L+ L   L+ L IS CSK+T+ G+A L    +L  L + G P+T   +  LS
Sbjct: 572 ITDSGLARLAPLGATLQHLDISDCSKLTERGLALLAAFPQLRTLAIAGLPLT--DVGRLS 629

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
               L  LNL R  + +   +   +   L  L+L   ++ D  + +L+ LTNL SL L S
Sbjct: 630 NFPELRSLNLARTAIVEGKLDSIRRYIHLVHLSLANTKLGDNDVRYLQYLTNLSSLKLPS 689

Query: 189 -CGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGL-TNLESINLSFTGISDGSLR 245
              IG+  + +++ L  L  L+L+D   V   G++ +S L   L S++LS T ++   + 
Sbjct: 690 RFQIGNSSIAHISKLP-LTELDLTDYIHVTDEGIQFISALAPTLVSLSLSNTKLTSAGIP 748

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD----SGAAYLRNFKNL 301
            +A  + L+ L LD   + D  +  L  LT L  L L    +T     SGA     F  L
Sbjct: 749 AVAACTKLEVLQLDRTPLKDDVIPLLAPLTRLRTLSLSRTHLTSAVVRSGA--FSPFTRL 806

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
            SL +    + + G+  ++ L  LT LNL
Sbjct: 807 ESLNLSWTFIENQGLDQLR-LPMLTTLNL 834



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 30/181 (16%)

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           V   G+ H++GL NL  ++L  T ++D ++  ++ L  L  LNL+   ITD+GLA L  L
Sbjct: 525 VTHVGINHIAGLNNLRVLDLGITRLNDQAMPTISQLP-LTVLNLERTLITDSGLARLAPL 583

Query: 275 -TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
              L HLD+   +++T+ G A L  F  LR+L I G  LTD G                 
Sbjct: 584 GATLQHLDISDCSKLTERGLALLAAFPQLRTLAIAGLPLTDVG----------------- 626

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
                      +S    L SLN++ + I    L  ++   +L  L+L + K+  ND++ L
Sbjct: 627 ----------RLSNFPELRSLNLARTAIVEGKLDSIRRYIHLVHLSLANTKLGDNDVRYL 676

Query: 393 Q 393
           Q
Sbjct: 677 Q 677



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 4/181 (2%)

Query: 33  LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQIS 91
           L NL  L L    +I    +     + L  L++     +TD  ++ +S L   L SL +S
Sbjct: 679 LTNLSSLKLPSRFQIGNSSIAHISKLPLTELDLTDYIHVTDEGIQFISALAPTLVSLSLS 738

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE-- 149
            +K+T +GI  +    KL +L L+  P+    +  L+ L  L  L+L+R  L+       
Sbjct: 739 NTKLTSAGIPAVAACTKLEVLQLDRTPLKDDVIPLLAPLTRLRTLSLSRTHLTSAVVRSG 798

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 209
            FS    L+ LNL +  I ++ L  L+ L  L +LNLDS  +     + LT L  L  + 
Sbjct: 799 AFSPFTRLESLNLSWTFIENQGLDQLR-LPMLTTLNLDSTRVTANVPLMLTQLPALTTVR 857

Query: 210 L 210
           +
Sbjct: 858 M 858


>gi|320165720|gb|EFW42619.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 664

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 164/388 (42%), Gaps = 34/388 (8%)

Query: 6   SGLSNLTSLSFRR--NNAITAQGMKAFAGLINLV--KLDLERCTRIHGGLVNLKGLMKLE 61
           S  + LT+L F    NN I    + AF+GL  LV  +LD  + T +        GL KL 
Sbjct: 269 SAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANA--FSGLSKLN 326

Query: 62  SLNIK--WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           +L++   W + I  S     +GLT L  L++  +++T        GL  L  L L    +
Sbjct: 327 TLHLYNNWLSAIPSSAF---TGLTALTQLRLDTNQITTVPANAFSGLTALIYLYLYNNQI 383

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
           T    ++ S L +L  L L   Q++       + + +L  L L  N+IT        GLT
Sbjct: 384 TTVPANAFSGLTALVQLYLYNNQITTIPSSALTGLSALTQLYLYNNQITSVPANGFSGLT 443

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            L  L L +  I        TGL  L  L+LS  Q+ S      SGLT L  + L    +
Sbjct: 444 ALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLYNNWL 503

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           S        GL++L  L L   QIT     A T LT L  L L+G +IT   A+      
Sbjct: 504 SAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTISASAFAGMS 563

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN------------------CNLTDKTL 341
           +L  L +    +T   V     L+ L+LL LS N                   +L + +L
Sbjct: 564 SLVQLYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPANAFSGLTAMTQLSLYNNSL 623

Query: 342 ELI-----SGLTGLVSLNVSNSRITSAG 364
             +     +GLT L +L + N++ITS  
Sbjct: 624 SAVPSSAFTGLTALQALLLYNNQITSVA 651



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 153/371 (41%), Gaps = 34/371 (9%)

Query: 20  NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIK--WCNCITDSD 75
           N IT     AF+GL  L  LDL   + T +        GL KL +L +   W + I  S 
Sbjct: 93  NPITNIASSAFSGLSVLNTLDLTNNQITTVPANA--FSGLSKLNTLYLYNNWLSAIPSSA 150

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
               +GLT L  L +  +++T    +   GL  L LL L    +    +D+ S L +L  
Sbjct: 151 F---TGLTALTQLLLHNNQITTVPSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQ 207

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L L   Q++      FS +  L  L L  N ++        GLT L  L L +  I    
Sbjct: 208 LYLYNNQITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVP 267

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-----------SFTGISD-GS 243
               TGL  L+ L L + Q+ +  +   SGLT L  + L           +F+G+S   +
Sbjct: 268 SSAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNT 327

Query: 244 LR------------KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           L                GL++L  L LD  QIT     A + LT L +L L+  +IT   
Sbjct: 328 LHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTVP 387

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
           A        L  L +    +T      +  LS+LT L L  N  +T       SGLT L 
Sbjct: 388 ANAFSGLTALVQLYLYNNQITTIPSSALTGLSALTQLYLYNN-QITSVPANGFSGLTALT 446

Query: 352 SLNVSNSRITS 362
            L + N+ ITS
Sbjct: 447 DLRLFNNTITS 457



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 169/409 (41%), Gaps = 33/409 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            +GL+ LT L    NN IT     AF GL  L  L L         +    GL  L  L 
Sbjct: 247 FTGLTALTQL-LLYNNQITTVPSSAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLR 305

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N IT       SGL+ L +L +  + ++    +   GL  LT L L+   +T    
Sbjct: 306 LD-TNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPA 364

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT---DECLVHLKGLTNL 181
           ++ S L +L YL L   Q++      FS + +L  L L  N+IT      L  L  LT L
Sbjct: 365 NAFSGLTALIYLYLYNNQITTVPANAFSGLTALVQLYLYNNQITTIPSSALTGLSALTQL 424

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTG 238
              N     +   G   LT L +L+    + T + ++     +GLT L  ++LS    T 
Sbjct: 425 YLYNNQITSVPANGFSGLTALTDLRLFNNTITSILANAF---TGLTKLTYLDLSLNQLTS 481

Query: 239 ISDGSLRKLAGLSSLKSLN--LDA-------------------RQITDTGLAALTSLTGL 277
           I  G+   L  L+ L   N  L A                    QIT     A T LT L
Sbjct: 482 IPAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTAL 541

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
             L L+G +IT   A+      +L  L +    +T   V     L+ L+LL LS N  +T
Sbjct: 542 VQLQLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLELSNN-QIT 600

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
                  SGLT +  L++ N+ +++        L  L++L L + ++T+
Sbjct: 601 SLPANAFSGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALLLYNNQITS 649



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 163/401 (40%), Gaps = 37/401 (9%)

Query: 6   SGLSNLTSLSFRRNNAITAQGM------------------------KAFAGLINLVKLDL 41
           +G+   T++ + +NN IT+                            AF+GL  L  LDL
Sbjct: 55  TGIPVTTTILYLQNNQITSISANAFSSLTLLTYLSLSSNPITNIASSAFSGLSVLNTLDL 114

Query: 42  --ERCTRIHGGLVNLKGLMKLESLNIK--WCNCITDSDMKPLSGLTNLKSLQISCSKVTD 97
              + T +        GL KL +L +   W + I  S     +GLT L  L +  +++T 
Sbjct: 115 TNNQITTVPANA--FSGLSKLNTLYLYNNWLSAIPSSAF---TGLTALTQLLLHNNQITT 169

Query: 98  SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
              +   GL  L LL L    +    +D+ S L +L  L L   Q++      FS +  L
Sbjct: 170 VPSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQLYLYNNQITSISANAFSGLSKL 229

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
             L L  N ++        GLT L  L L +  I        TGL  L+ L L + Q+ +
Sbjct: 230 NTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQFLYLYNNQIAT 289

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
             +   SGLT L  + L    I+       +GLS L +L+L    ++    +A T LT L
Sbjct: 290 VAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTAL 349

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
           T L L   +IT   A        L  L +    +T         L++L  L L  N  +T
Sbjct: 350 TQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTVPANAFSGLTALVQLYLYNN-QIT 408

Query: 338 DKTLELISGLTGLVSLNVSNSRITSA---GLRHLKPLKNLR 375
                 ++GL+ L  L + N++ITS    G   L  L +LR
Sbjct: 409 TIPSSALTGLSALTQLYLYNNQITSVPANGFSGLTALTDLR 449



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 127/299 (42%), Gaps = 30/299 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLES 62
            SGL+ L  L +  NN IT     AF+GL  LV+L L   + T I      L GL  L  
Sbjct: 367 FSGLTALIYL-YLYNNQITTVPANAFSGLTALVQLYLYNNQITTIPSSA--LTGLSALTQ 423

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPV 119
           L + + N IT       SGLT L  L++  + +T        GL KLT L+L   +   +
Sbjct: 424 LYL-YNNQITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSI 482

Query: 120 TAACLDSLSALGSLFYLN---------------------LNRCQLSDDGCEKFSKIGSLK 158
            A     L+AL  L   N                     L   Q++      F+ + +L 
Sbjct: 483 PAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALV 542

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
            L L  N+IT        G+++L  L L S  I    +   TGL +L  LELS+ Q+ S 
Sbjct: 543 QLQLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSL 602

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
                SGLT +  ++L    +S        GL++L++L L   QIT     A T LT L
Sbjct: 603 PANAFSGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALLLYNNQITSVAANAFTGLTAL 661



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 117/278 (42%), Gaps = 4/278 (1%)

Query: 118 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 177
           P+T     + S L  L  L+L   Q++      FS +  L  L L  N ++        G
Sbjct: 94  PITNIASSAFSGLSVLNTLDLTNNQITTVPANAFSGLSKLNTLYLYNNWLSAIPSSAFTG 153

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           LT L  L L +  I        TGL  L+ L L + Q+ +  +   SGLT L  + L   
Sbjct: 154 LTALTQLLLHNNQITTVPSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQLYLYNN 213

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I+  S    +GLS L +L L+   ++    +A T LT LT L L+  +IT   ++    
Sbjct: 214 QITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTG 273

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
              L+ L +    +    +     L++L  L L  N  +T       SGL+ L +L++ N
Sbjct: 274 LTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTN-QITTVPANAFSGLSKLNTLHLYN 332

Query: 358 ---SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
              S I S+    L  L  LR  T +   V AN    L
Sbjct: 333 NWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGL 370



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 144/350 (41%), Gaps = 30/350 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLES 62
            SGLS L +L    NN ++A    AF GL  L  ++LD  + T +        GL  L  
Sbjct: 319 FSGLSKLNTLHLY-NNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANA--FSGLTALIY 375

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L + + N IT       SGLT L  L +  +++T    + L GL  LT L L    +T+ 
Sbjct: 376 LYL-YNNQITTVPANAFSGLTALVQLYLYNNQITTIPSSALTGLSALTQLYLYNNQITSV 434

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             +  S L +L  L L    ++      F+ +  L  L+L  N++T        GLT L 
Sbjct: 435 PANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALT 494

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L L +  +        TGL  L  L L + Q+ +      +GLT L  + L    I+  
Sbjct: 495 QLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTI 554

Query: 243 SLRKLAGLSSLKSLNLDARQITD------TGLA------------------ALTSLTGLT 278
           S    AG+SSL  L L + +IT       TGL                   A + LT +T
Sbjct: 555 SASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPANAFSGLTAMT 614

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
            L L+   ++   ++       L++L +    +T         L++L LL
Sbjct: 615 QLSLYNNSLSAVPSSAFTGLTALQALLLYNNQITSVAANAFTGLTALVLL 664



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 126/316 (39%), Gaps = 25/316 (7%)

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
            +T+   +   GL  L  L+L    +T    ++ S L  L  L L    LS      F+ 
Sbjct: 94  PITNIASSAFSGLSVLNTLDLTNNQITTVPANAFSGLSKLNTLYLYNNWLSAIPSSAFTG 153

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
           + +L  L L  N+IT        GLT L+ L L +  I    +   +GL  L  L L + 
Sbjct: 154 LTALTQLLLHNNQITTVPSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQLYLYNN 213

Query: 214 QVGSSGLRHLSGLTNLESINL-----------SFTG-------------ISDGSLRKLAG 249
           Q+ S      SGL+ L ++ L           +FTG             I+        G
Sbjct: 214 QITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTG 273

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           L++L+ L L   QI    + A + LT L  L L   +IT   A        L +L +   
Sbjct: 274 LTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNN 333

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
            L+         L++LT L L  N  +T       SGLT L+ L + N++IT+       
Sbjct: 334 WLSAIPSSAFTGLTALTQLRLDTN-QITTVPANAFSGLTALIYLYLYNNQITTVPANAFS 392

Query: 370 PLKNLRSLTLESCKVT 385
            L  L  L L + ++T
Sbjct: 393 GLTALVQLYLYNNQIT 408


>gi|291000432|ref|XP_002682783.1| predicted protein [Naegleria gruberi]
 gi|284096411|gb|EFC50039.1| predicted protein [Naegleria gruberi]
          Length = 303

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 99/182 (54%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
           S++  LK L +  N I DE    +  +  L SL++    IGDEG  +++ +  L  L++S
Sbjct: 115 SEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQIGDEGAKSISEMNQLTSLDIS 174

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
             Q+G  G + +  +  L S+++ F  I +   + ++G++ L SL++   +I D G  ++
Sbjct: 175 GNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMNQLTSLDISGNRIGDEGAKSI 234

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
           + +  LT L+++  RI D GA  + + K L+SL I G  + D   K I ++  LT L++S
Sbjct: 235 SGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRIGDEEAKSISEMKQLTSLDIS 294

Query: 332 QN 333
            N
Sbjct: 295 NN 296



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 103/206 (50%), Gaps = 6/206 (2%)

Query: 114 LEGCPVTAACLDSL------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
           +E    +   LDS+      S +  L  L ++   + D+G +  S++  L  L++ +N+I
Sbjct: 95  IENVKFSRRLLDSIEQAKFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQI 154

Query: 168 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 227
            DE    +  +  L SL++    IGDEG  ++  +  L  L++   Q+G  G + +SG+ 
Sbjct: 155 GDEGAKSISEMNQLTSLDISGNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMN 214

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
            L S+++S   I D   + ++G++ L SLN+   +I D G  ++  +  L  L++ G RI
Sbjct: 215 QLTSLDISGNRIGDEGAKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRI 274

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTD 313
            D  A  +   K L SL+I    + D
Sbjct: 275 GDEEAKSISEMKQLTSLDISNNRIGD 300



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 101/186 (54%), Gaps = 9/186 (4%)

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           + +S +  L+S+ +   GI D   + ++ +  L SL++   QI D G  +++ +  LT L
Sbjct: 112 KFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQIGDEGAKSISEMNQLTSL 171

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
           D+ G +I D GA  +   K L SL+I    + + G K I  ++ LT L++S N  + D+ 
Sbjct: 172 DISGNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMNQLTSLDISGN-RIGDEG 230

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-------ESCKVTANDIKRLQ 393
            + ISG+  L SLNV N+RI   G + +  +K L+SL +       E  K + +++K+L 
Sbjct: 231 AKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRIGDEEAK-SISEMKQLT 289

Query: 394 SRDLPN 399
           S D+ N
Sbjct: 290 SLDISN 295



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 26/231 (11%)

Query: 64  NIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           N+K+   + DS    K +S +  LKSL I  + + D G  ++  +++LT L         
Sbjct: 97  NVKFSRRLLDSIEQAKFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSL--------- 147

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
                     S++Y      Q+ D+G +  S++  L  L++  N+I DE    +  +  L
Sbjct: 148 ----------SVYY-----NQIGDEGAKSISEMNQLTSLDISGNQIGDEGAKSIIEVKQL 192

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            SL++    IG+EG   ++G+  L  L++S  ++G  G + +SG+  L S+N+    I D
Sbjct: 193 TSLDIYFNQIGEEGAKFISGMNQLTSLDISGNRIGDEGAKSISGMNQLTSLNVYNNRIGD 252

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
              + +  +  LKSLN+   +I D    +++ +  LT LD+   RI D  A
Sbjct: 253 EGAKSIIDMKQLKSLNIGGNRIGDEEAKSISEMKQLTSLDISNNRIGDEEA 303


>gi|406830031|ref|ZP_11089625.1| leucine-rich repeat-containing protein [Schlesneria paludicola DSM
           18645]
          Length = 306

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           + +TD   K L+    L +L ++ S + D+ +  +  L +L  L L+   VT A L S+S
Sbjct: 59  HSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAGLQSIS 118

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
           +L  L  LNL  C ++D G    + +  L  LNL   +I    LV+L  L  LE+L L +
Sbjct: 119 SLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEALYLQN 178

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             +  E +  L+GL +LK L L+ T+ G   +R ++GL +LE + L+ T I D  +  LA
Sbjct: 179 TVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIKDEDIPALA 238

Query: 249 GL-----SSLKSLNLDARQITDTGLAALTSLTGL---THLDLFGARITDSGAAYLRNF 298
            +        K L ++   ++D  L  +  L  L   T + + G ++T  G   LR  
Sbjct: 239 AVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTKDGVVRLRKL 296



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 115/243 (47%), Gaps = 8/243 (3%)

Query: 88  LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 147
           + +S   +TD     L     LT L L   P+  A +  + AL  L  L L+  Q++D G
Sbjct: 54  VSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAG 113

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
            +  S +  L+ LNL    +TD  L  L GLT L SLNL+   I   GLV L+ L  L+ 
Sbjct: 114 LQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEA 173

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267
           L L +T V    +  LSGL +L+ ++L+ T    G +R + GL SL+ L L+   I D  
Sbjct: 174 LYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIKDED 233

Query: 268 LAALTSLTGL--THLD-LFGARITDSGAAY-----LRNFKNLRSLEICGGGLTDAGVKHI 319
           + AL ++      H   LF  +   S AA      L + K    + + G  +T  GV  +
Sbjct: 234 IPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTKDGVVRL 293

Query: 320 KDL 322
           + L
Sbjct: 294 RKL 296



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 121/258 (46%), Gaps = 18/258 (6%)

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
            V++L  + +TD+    L     L +L L    IGD  +  +  L  L+ L L  TQV  
Sbjct: 52  HVVSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTD 111

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
           +GL+ +S L +L  +NL+   ++DG L  LAGL+ L SLNL+  QI   GL  L+ L  L
Sbjct: 112 AGLQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRL 171

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
             L L    +       L   ++L+ L + G       V+ I  L SL  L L    N T
Sbjct: 172 EALYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYL----NGT 227

Query: 338 DKTLELISGLTGLVSLN--------VSNSRITSAGLRHLKPLKNLRSLTL---ESCKVTA 386
               E I  L  +++ N        V  + ++ A L  + PL +L+  TL      KVT 
Sbjct: 228 SIKDEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTK 287

Query: 387 NDIKRLQSRDLP--NLVS 402
           + + RL+ + LP  N+VS
Sbjct: 288 DGVVRLR-KLLPEANVVS 304



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 7/187 (3%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +  L+ L SL+      +T  G+++ + L +L +L+L  C+   GGL +L GL +L SLN
Sbjct: 93  IGALTQLESLALDHTQ-VTDAGLQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLN 151

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +     I    +  LS L  L++L +  + V    I  L GL+ L +L+L G       +
Sbjct: 152 LNDTQ-INGLGLVYLSKLNRLEALYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIV 210

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHLKGLT 179
            +++ L SL  L LN   + D+     + +        K L +    ++D  L  +  L 
Sbjct: 211 RAITGLPSLERLYLNGTSIKDEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLA 270

Query: 180 NLESLNL 186
           +L+   L
Sbjct: 271 DLKEFTL 277


>gi|320165522|gb|EFW42421.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 743

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 167/380 (43%), Gaps = 26/380 (6%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 65
           S +   T+  +  NN+IT     AFAGL  L +L+L+                       
Sbjct: 54  SAIPGTTTQLYLNNNSITIISASAFAGLTALTRLELKT---------------------- 91

Query: 66  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 125
              N IT        GLT L+ L ++ +++T        GL  L  L L    +T+    
Sbjct: 92  ---NQITSFPADTFIGLTFLRELFLNYNQITSFPADTFIGLTFLRELFLNYNQITSIPTS 148

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           + ++  +L  L+L    ++    + F  +  LK L + FN+ T        GLT L  L+
Sbjct: 149 AFASQTALIQLDLRSNLITSFPADTFIGLTMLKNLYMDFNQFTSIPANTFTGLTALTFLS 208

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           L +  I        TGL  L  L+L++ Q+ ++ +   +GLT L  ++L+   I+  S  
Sbjct: 209 LHTNQIASIPANTFTGLTALTFLDLTNNQITNTSVDAFTGLTALTHLDLTDNRITTISAS 268

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
             +GL++L+ LNL+  QIT       + LT L +L L   +I+    +       L  + 
Sbjct: 269 TFSGLTALRLLNLNGNQITTISANTFSGLTTLNYLFLTTNQISSISTSAFAGLTVLTEMS 328

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
           +    +T         L++LT+L+LS N  +T    +  + LT L +L++++++ITS   
Sbjct: 329 LNNNSITSISANTFAVLTALTILDLSDN-QITSIPADAFASLTALDTLSLNDNQITSIPA 387

Query: 366 RHLKPLKNLRSLTLESCKVT 385
                L  L  L LE+  +T
Sbjct: 388 NAFTSLTTLHRLPLENNPLT 407



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 126/284 (44%), Gaps = 1/284 (0%)

Query: 103 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162
             GL  LT L L+   +T+   D+   L  L  L LN  Q++    + F  +  L+ L L
Sbjct: 78  FAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNYNQITSFPADTFIGLTFLRELFL 137

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
            +N+IT          T L  L+L S  I         GL  LK L +   Q  S     
Sbjct: 138 NYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGLTMLKNLYMDFNQFTSIPANT 197

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
            +GLT L  ++L    I+        GL++L  L+L   QIT+T + A T LT LTHLDL
Sbjct: 198 FTGLTALTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQITNTSVDAFTGLTALTHLDL 257

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
              RIT   A+       LR L + G  +T         L++L  L L+ N  ++  +  
Sbjct: 258 TDNRITTISASTFSGLTALRLLNLNGNQITTISANTFSGLTTLNYLFLTTN-QISSISTS 316

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
             +GLT L  ++++N+ ITS        L  L  L L   ++T+
Sbjct: 317 AFAGLTVLTEMSLNNNSITSISANTFAVLTALTILDLSDNQITS 360



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 133/324 (41%), Gaps = 31/324 (9%)

Query: 16  FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 75
           F   N IT+    AFA    L++LDL                           N IT   
Sbjct: 136 FLNYNQITSIPTSAFASQTALIQLDLRS-------------------------NLITSFP 170

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
                GLT LK+L +  ++ T        GL  LT L+L    + +   ++ + L +L +
Sbjct: 171 ADTFIGLTMLKNLYMDFNQFTSIPANTFTGLTALTFLSLHTNQIASIPANTFTGLTALTF 230

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L+L   Q+++   + F+ + +L  L+L  N IT        GLT L  LNL+   I    
Sbjct: 231 LDLTNNQITNTSVDAFTGLTALTHLDLTDNRITTISASTFSGLTALRLLNLNGNQITTIS 290

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
               +GL  L  L L+  Q+ S      +GLT L  ++L+   I+  S    A L++L  
Sbjct: 291 ANTFSGLTTLNYLFLTTNQISSISTSAFAGLTVLTEMSLNNNSITSISANTFAVLTALTI 350

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-- 313
           L+L   QIT     A  SLT L  L L   +IT   A    +   L  L +    LT   
Sbjct: 351 LDLSDNQITSIPADAFASLTALDTLSLNDNQITSIPANAFTSLTTLHRLPLENNPLTTLP 410

Query: 314 ----AGVKHIKDLSSLTLLNLSQN 333
                G+ +   LSS  + NLS N
Sbjct: 411 PGLFKGLPYGLLLSSSFMPNLSPN 434


>gi|427735495|ref|YP_007055039.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
           7116]
 gi|427370536|gb|AFY54492.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
           7116]
          Length = 396

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 169/334 (50%), Gaps = 53/334 (15%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           SD+KPLSGLTNL ++ +  +K++D  +  L  L  LT LN+ G  ++   +  L++L +L
Sbjct: 84  SDLKPLSGLTNLTNIDLWGNKISD--VKPLVNLTNLTNLNIGGNKISD--VKPLASLTNL 139

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             L+L   ++SD      + + +L  L++  N+I+D  +  L+ L NL  L + S  I D
Sbjct: 140 TNLDLGGNKISD--VTPLASLTNLIRLDVYSNQISD--INSLENLNNLTFLRVGSNRIVD 195

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
             +       NL  L L + Q+  S +R LS L NL  +NL    ISD  ++ +A L+SL
Sbjct: 196 --VKQFANFTNLTELWLEENQI--SDVRPLSSLNNLTKLNLMSNQISD--IKPIASLNSL 249

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
            SL+LD  QI+D  + AL++LT LT L L   +I +     L N   LR L +    ++D
Sbjct: 250 NSLDLDKNQISD--IEALSNLTNLTTLGLDRNQIIN--IKPLSNLTKLRWLFLRQNQISD 305

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 373
                IK LSSLT L          + LEL S                   +R +KPL N
Sbjct: 306 -----IKPLSSLTNL----------RWLELKSN-----------------KIRDVKPLTN 333

Query: 374 LRSLTLESCKVTANDIKRLQS-RDLPNLVSFRPE 406
           L    L +  +++N I  +QS  +L NLV+F  E
Sbjct: 334 LAK--LRNLNLSSNQITNVQSLANLTNLVNFNVE 365



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 160/329 (48%), Gaps = 50/329 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LSGL+NLT++    N       +K    L NL  L++       GG              
Sbjct: 89  LSGLTNLTNIDLWGN---KISDVKPLVNLTNLTNLNI-------GG-------------- 124

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N I  SD+KPL+ LTNL +L +  +K++D  +  L  L  L  L++    ++   +
Sbjct: 125 ----NKI--SDVKPLASLTNLTNLDLGGNKISD--VTPLASLTNLIRLDVYSNQISD--I 174

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           +SL  L +L +L +   ++ D   ++F+   +L  L L  N+I+D  +  L  L NL  L
Sbjct: 175 NSLENLNNLTFLRVGSNRIVD--VKQFANFTNLTELWLEENQISD--VRPLSSLNNLTKL 230

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           NL S  I D  +  +  L +L  L+L   Q+  S +  LS LTNL ++ L    I +  +
Sbjct: 231 NLMSNQISD--IKPIASLNSLNSLDLDKNQI--SDIEALSNLTNLTTLGLDRNQIIN--I 284

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + L+ L+ L+ L L   QI+D  +  L+SLT L  L+L   +I D     L N   LR+L
Sbjct: 285 KPLSNLTKLRWLFLRQNQISD--IKPLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNL 340

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            +    +T+  V+ + +L++L   N+ +N
Sbjct: 341 NLSSNQITN--VQSLANLTNLVNFNVEEN 367



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 122/256 (47%), Gaps = 32/256 (12%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD--------------LERCTRIHGG 50
           L+ L+NLT+L    N       +   A L NL++LD              L   T +  G
Sbjct: 133 LASLTNLTNLDLGGN---KISDVTPLASLTNLIRLDVYSNQISDINSLENLNNLTFLRVG 189

Query: 51  ---LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 107
              +V++K      +L   W      SD++PLS L NL  L +  ++++D  I  +  L 
Sbjct: 190 SNRIVDVKQFANFTNLTELWLEENQISDVRPLSSLNNLTKLNLMSNQISD--IKPIASLN 247

Query: 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
            L  L+L+   ++   +++LS L +L  L L+R Q+ +   +  S +  L+ L L  N+I
Sbjct: 248 SLNSLDLDKNQISD--IEALSNLTNLTTLGLDRNQIIN--IKPLSNLTKLRWLFLRQNQI 303

Query: 168 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 227
           +D  +  L  LTNL  L L S  I D  +  LT L  L+ L LS  Q+  + ++ L+ LT
Sbjct: 304 SD--IKPLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLNLSSNQI--TNVQSLANLT 357

Query: 228 NLESINLSFTGISDGS 243
           NL + N+    I+  S
Sbjct: 358 NLVNFNVEENPINTKS 373



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 13/161 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           ++ L++L SL   +N       ++A + L NL  L L+R       ++N+K L  L  L 
Sbjct: 243 IASLNSLNSLDLDKN---QISDIEALSNLTNLTTLGLDR-----NQIINIKPLSNLTKLR 294

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             +      SD+KPLS LTNL+ L++  +K+ D  +  L  L KL  LNL    +T   +
Sbjct: 295 WLFLRQNQISDIKPLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLNLSSNQITN--V 350

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCE-KFSKIGSLKVLNLGF 164
            SL+ L +L   N+    ++   C  + +K GS K+ +  F
Sbjct: 351 QSLANLTNLVNFNVEENPINTKSCPGRSTKCGSTKLKHRTF 391


>gi|301617436|ref|XP_002938142.1| PREDICTED: f-box/LRR-repeat protein 14-like [Xenopus (Silurana)
           tropicalis]
          Length = 400

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 172/316 (54%), Gaps = 28/316 (8%)

Query: 103 LKGLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSL 157
           ++GL  +  LNL GC  +T   L    +  +GSL  LNL+ C Q++D    + ++ +  L
Sbjct: 86  IQGLPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIAQYLKGL 145

Query: 158 KVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN--------LK 206
           +VL LG    IT+  L+ +  GL  L+SLNL SC  + D G+ +L G+          L+
Sbjct: 146 QVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 207 CLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQ 262
            L L D Q +    L+H+S GL  L  +NLSF G ISD  L  L+ +  L+SLNL +   
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDN 265

Query: 263 ITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-K 317
           I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +    L+SL +C   ++D G+ +
Sbjct: 266 ISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGINR 324

Query: 318 HIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLR 375
            ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++   +RIT  GL  +  L  L+
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPCLK 384

Query: 376 SLTLESCKVTANDIKR 391
            L L   ++T ++  R
Sbjct: 385 VLNLGLWQMTESEKVR 400



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 154/306 (50%), Gaps = 32/306 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++GL  +ESLN+  C  +TD+ +    +  + +L+SL +S C +VTDS +     YLKGL
Sbjct: 86  IQGLPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIAQYLKGL 145

Query: 107 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLSDD-------GCEKFSKIGSL 157
           Q   +L L GC        L     L  L  LNL  C+   D       G  + +  G L
Sbjct: 146 Q---VLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCL 202

Query: 158 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 211
            +  L   +   +TD  L H+ +GL  L  LNL  C GI D GL++L+ +  L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRS 262

Query: 212 DTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGL 268
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGI 322

Query: 269 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 324
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPC 382

Query: 325 LTLLNL 330
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++GL ++ESLNL  C      G+G   +  +  L +L    C +++D+ +G    ++L G
Sbjct: 86  IQGLPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIA-QYLKG 144

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 145 LQVLELGGCTNITNTGL----LLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEG 200

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R  + LR  +L  CGG ++DAG+ H+  +  L  LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGG-ISDAGLLHLSHMGGLRSLN 259

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ 
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISD 319

Query: 387 NDIKRL 392
           + I R+
Sbjct: 320 DGINRM 325



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 30/236 (12%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 167 GLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 222

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS +  L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 223 ISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLRLS 282

Query: 111 LLNLEGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-F 164
            L++  C        SL+ +    Y    L+L  C +SDDG  +  + +  L+ LN+G  
Sbjct: 283 GLDVSFCDKVGD--QSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQC 340

Query: 165 NEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
             ITD+ L  + + L+ L  ++L  C  I  +GL  +T L  LK L L   Q+  S
Sbjct: 341 VRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPCLKVLNLGLWQMTES 396


>gi|430741732|ref|YP_007200861.1| hypothetical protein Sinac_0756 [Singulisphaera acidiphila DSM
           18658]
 gi|430013452|gb|AGA25166.1| hypothetical protein Sinac_0756 [Singulisphaera acidiphila DSM
           18658]
          Length = 304

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 107/216 (49%), Gaps = 4/216 (1%)

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
           GS+    L    I+DE    L     L+ L +    + D GL  L GL  L+ +     +
Sbjct: 77  GSINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPK 136

Query: 215 VGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
           V ++GL HL G T+L S+ L     I+D  L  LAGL++L+ LNL   +I   GL  L  
Sbjct: 137 VTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLAR 196

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           L  L  L L     TD+G A L  F NL+ L +  G  TDAG+  +  L SLT L L + 
Sbjct: 197 LGRLRTLVL--GSTTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGL-EA 253

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
            +LT+  L  ++GL  L  L++  + ++ A +   K
Sbjct: 254 GDLTEAVLIHVAGLPNLERLDLGGAPVSQAAIEKFK 289



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 3/209 (1%)

Query: 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
            L   P++     +L     L  L +    ++D G  +   +  L+ +     ++T+  L
Sbjct: 83  TLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGL 142

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
            HLKG T+L SL L     I DEGLV+L GL NL+ L LS  ++   GL HL+ L  L +
Sbjct: 143 AHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLARLGRLRT 202

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           + L  T  +D  L +L   ++LK L L   + TD GLA L+ L  LT L L    +T++ 
Sbjct: 203 LVLGST--TDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLEAGDLTEAV 260

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
             ++    NL  L++ G  ++ A ++  K
Sbjct: 261 LIHVAGLPNLERLDLGGAPVSQAAIEKFK 289



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 101/233 (43%), Gaps = 28/233 (12%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I+D     L     L+ L +    +TD+G+A L GL +L  +      VT A L  L   
Sbjct: 89  ISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGLAHLKGA 148

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
             L  L L R                         EITDE LVHL GLTNLE LNL    
Sbjct: 149 THLVSLELLRVP-----------------------EITDEGLVHLAGLTNLEKLNLSGAR 185

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           I   GL +L  L  L+ L L  T    +GL  L   TNL+ + L     +D  L +L+ L
Sbjct: 186 IAGPGLPHLARLGRLRTLVLGSTT--DAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKL 243

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
            SL  L L+A  +T+  L  +  L  L  LDL GA ++    A +  FK  R 
Sbjct: 244 RSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGAPVSQ---AAIEKFKRARP 293



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 99/201 (49%), Gaps = 3/201 (1%)

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
           GS+    L +  +SD+          L+ L +    +TD  L  L GL  L  +      
Sbjct: 77  GSINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPK 136

Query: 191 IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
           + + GL +L G  +L  LEL    ++   GL HL+GLTNLE +NLS   I+   L  LA 
Sbjct: 137 VTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLAR 196

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           L  L++L L +   TD GLA L   T L  L L   + TD+G A L   ++L  L +  G
Sbjct: 197 LGRLRTLVLGS--TTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLEAG 254

Query: 310 GLTDAGVKHIKDLSSLTLLNL 330
            LT+A + H+  L +L  L+L
Sbjct: 255 DLTEAVLIHVAGLPNLERLDL 275



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 80/151 (52%), Gaps = 5/151 (3%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLES 62
           +L G ++L SL   R   IT +G+   AGL NL KL+L    RI G GL +L  L +L +
Sbjct: 144 HLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLS-GARIAGPGLPHLARLGRLRT 202

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L +      TD+ +  L   TNLK L +   K TD+G+A L  L+ LT L LE   +T A
Sbjct: 203 LVL---GSTTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLEAGDLTEA 259

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
            L  ++ L +L  L+L    +S    EKF +
Sbjct: 260 VLIHVAGLPNLERLDLGGAPVSQAAIEKFKR 290



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 2/170 (1%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           +T  G+    GL  L ++   +    + GL +LKG   L SL +     ITD  +  L+G
Sbjct: 113 MTDTGLAQLGGLPRLRQVYCFKPKVTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAG 172

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           LTNL+ L +S +++   G+ +L  L +L  L L     T A L  L    +L  L L   
Sbjct: 173 LTNLEKLNLSGARIAGPGLPHLARLGRLRTLVLGST--TDAGLAQLGRFTNLKQLYLGTG 230

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           + +D G  + SK+ SL  L L   ++T+  L+H+ GL NLE L+L    +
Sbjct: 231 KYTDAGLAELSKLRSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGAPV 280



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 64/131 (48%)

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           S+    L    I+D    AL     L  L +    +TD+G A L     LR +      +
Sbjct: 78  SINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKV 137

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
           T+AG+ H+K  + L  L L +   +TD+ L  ++GLT L  LN+S +RI   GL HL  L
Sbjct: 138 TNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLARL 197

Query: 372 KNLRSLTLESC 382
             LR+L L S 
Sbjct: 198 GRLRTLVLGST 208


>gi|290972233|ref|XP_002668860.1| predicted protein [Naegleria gruberi]
 gi|284082393|gb|EFC36116.1| predicted protein [Naegleria gruberi]
          Length = 296

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 150/299 (50%), Gaps = 3/299 (1%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L +LN++  N I +   K +S L N+ +L IS + +   G  Y+  +++LT L +  
Sbjct: 1   MKQLTNLNVRH-NDIDEEGAKYISELMNVSTLDISGNSINKRGAKYIGEMKQLTDLGMYC 59

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
           C +       +S+L  L +L++N   + D+G +   +I  L  L++  N+I  E + ++ 
Sbjct: 60  CSIGVEGTKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSICDNKIGSEGVKYIG 119

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            L NL  L +    IGD G   ++ +  L  L++S   +   G++++S + +L  + +S 
Sbjct: 120 QLKNLLKLYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHLIDLMISD 179

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I     + ++ +  L SL +    I   G   L+ +  LT+L++    I D G  +L 
Sbjct: 180 NNIDSMGAKHISQM-KLTSLEVYNNTIDVEGAKYLSEMEQLTNLEISKNEIGDKGVQFLS 238

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
             K L SL+I    ++D G K+I ++ +L  L++  N  +++  +E +  +  L  L++
Sbjct: 239 GMKQLTSLDINENKISDVGAKYILEMKNLIDLSVFDN-EISEDIIERLREMKQLTYLDI 296



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 140/289 (48%), Gaps = 28/289 (9%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG----- 190
           LN+    + ++G +  S++ ++  L++  N I      ++  +  L  L +  C      
Sbjct: 7   LNVRHNDIDEEGAKYISELMNVSTLDISGNSINKRGAKYIGEMKQLTDLGMYCCSIGVEG 66

Query: 191 -------------------IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
                              IGDEG   +  +  L  L + D ++GS G++++  L NL  
Sbjct: 67  TKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSICDNKIGSEGVKYIGQLKNLLK 126

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           + +S   I D   + ++ ++ L  L++ +  IT  G+  ++ +  L  L +    I   G
Sbjct: 127 LYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHLIDLMISDNNIDSMG 186

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
           A ++   K L SLE+    +   G K++ ++  LT L +S+N  + DK ++ +SG+  L 
Sbjct: 187 AKHISQMK-LTSLEVYNNTIDVEGAKYLSEMEQLTNLEISKN-EIGDKGVQFLSGMKQLT 244

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           SL+++ ++I+  G +++  +KNL  L++   +++ + I+RL  R++  L
Sbjct: 245 SLDINENKISDVGAKYILEMKNLIDLSVFDNEISEDIIERL--REMKQL 291



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 155/331 (46%), Gaps = 43/331 (12%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLE 61
           +  LT+L+ R N+ I  +G K  + L+N+  LD      I G  +N +G      + +L 
Sbjct: 1   MKQLTNLNVRHND-IDEEGAKYISELMNVSTLD------ISGNSINKRGAKYIGEMKQLT 53

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            L + +C  I     K +S L  L  L I+ + + D G  Y+  +++LT L++  C    
Sbjct: 54  DLGM-YCCSIGVEGTKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSI--CD--- 107

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
                 + +GS             +G +   ++ +L  L +  NEI D     +  +  L
Sbjct: 108 ------NKIGS-------------EGVKYIGQLKNLLKLYVSCNEIGDNGAQFISEMNQL 148

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG--LTNLESINLSFTGI 239
             L++ S  I   G+  ++ + +L  L +SD  + S G +H+S   LT+LE  N     I
Sbjct: 149 TKLDISSVNITPIGIKYISKMEHLIDLMISDNNIDSMGAKHISQMKLTSLEVYN---NTI 205

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
                + L+ +  L +L +   +I D G+  L+ +  LT LD+   +I+D GA Y+   K
Sbjct: 206 DVEGAKYLSEMEQLTNLEISKNEIGDKGVQFLSGMKQLTSLDINENKISDVGAKYILEMK 265

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
           NL  L +    +++  ++ ++++  LT L++
Sbjct: 266 NLIDLSVFDNEISEDIIERLREMKQLTYLDI 296


>gi|290998760|ref|XP_002681948.1| predicted protein [Naegleria gruberi]
 gi|284095574|gb|EFC49204.1| predicted protein [Naegleria gruberi]
          Length = 391

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 150/322 (46%), Gaps = 28/322 (8%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +++ L  LT L    +N I ++G +  +    +L KLD+   T I  G   +  L +L  
Sbjct: 87  DIADLKQLTELDIS-DNKINSEGARVISESFKHLTKLDISNNT-IDVGTKYISQLKQLTY 144

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++   N I + D+K +  +  L SL I  + + + G  Y+ GL+++T L++    +   
Sbjct: 145 LDVS-NNEIEEEDVKYIGNMNGLTSLSIQYNHIGNIGAQYISGLKQITTLSIYSGDI--- 200

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
                                 D+G +  S++  L  LN+GFN I     +H+  L  L 
Sbjct: 201 ---------------------GDEGAKYISEMKQLTNLNIGFNNINIRGAIHISKLKQLT 239

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L++ +   G  GL  +T L  L  L   D+++ S G++++S +  L  ++LS+  I+  
Sbjct: 240 ELSISANNFGSGGLKYITQLKQLTKLYCCDSEIDSEGVKYISEMKQLTDVDLSYNNINSE 299

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            ++ L  L  L  L +    + + G   ++ L  LTHLD+    ++D G   +   K L 
Sbjct: 300 GVKYLNKLKKLTKLYIGGNDLGNKGAMYISRLNQLTHLDICRNNVSDEGFKSISKMKQLS 359

Query: 303 SLEICGGGLTDAGVKHIKDLSS 324
           SL I    ++  GV++I+ ++ 
Sbjct: 360 SLFISENTISGEGVEYIRKMTQ 381


>gi|320167107|gb|EFW44006.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 624

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 112/238 (47%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N IT       +GLT L  L +  +++T        GL  LT L      +T+   D+ +
Sbjct: 68  NSITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIPADTFT 127

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L SL YL+L   Q++      F+ + +L  L+LG N+IT        GLT L +L+L +
Sbjct: 128 GLTSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTTLSLQN 187

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             I        TGL  L CL     Q+ S      +G+T+L  ++L    I+  S    A
Sbjct: 188 NQITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISANAFA 247

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           GL++L  L+L   +IT   + A T LTGLT L L G +IT   ++   N   L +L +
Sbjct: 248 GLTALTYLSLFNNKITSIPVGAFTGLTGLTDLYLDGNQITSIPSSSFTNLTALTALAL 305



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 121/284 (42%), Gaps = 33/284 (11%)

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +T+   ++ + L +L YL+L   Q++      F+ + +L  L   +N+IT        GL
Sbjct: 70  ITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIPADTFTGL 129

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           T+L  L+L +  +        TGL  L  L L   Q+ S      +GLT L +++L    
Sbjct: 130 TSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTTLSLQNNQ 189

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           I+  S     GL++L  L   + QIT     A T +T LT+L L+  +IT   A      
Sbjct: 190 ITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISA------ 243

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
                                  L++LT L+L  N  +T   +   +GLTGL  L +  +
Sbjct: 244 ------------------NAFAGLTALTYLSLFNN-KITSIPVGAFTGLTGLTDLYLDGN 284

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS---RDLPN 399
           +ITS        L  L +L L++     N I  L     + LPN
Sbjct: 285 QITSIPSSSFTNLTALTALALQN-----NPITTLPPGLFKGLPN 323



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 120/272 (44%), Gaps = 31/272 (11%)

Query: 20  NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 77
           N+IT+    AF GL  L  L L+  + T I  G     GL  L +L   + N IT     
Sbjct: 68  NSITSISANAFTGLTALTYLSLQYNQITGIPAG--TFTGLTALTALFFAY-NQITSIPAD 124

Query: 78  PLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
             +GLT+L  L +  ++VT  SG A+  GL  LT L+L    +T+   D+ + L +L  L
Sbjct: 125 TFTGLTSLTYLSLQNNQVTSISGTAF-TGLTALTSLSLGPNQITSIPADTFTGLTALTTL 183

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           +L   Q++      F+ + +L  L  G N+IT        G+T+L  L+L    I     
Sbjct: 184 SLQNNQITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKI----- 238

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
                           T + ++    L+ LT L   N   T I  G+   L GL+ L   
Sbjct: 239 ----------------TSISANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLY-- 280

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
            LD  QIT    ++ T+LT LT L L    IT
Sbjct: 281 -LDGNQITSIPSSSFTNLTALTALALQNNPIT 311



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 99/243 (40%), Gaps = 6/243 (2%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L L  N IT        GLT L  L+L    I        TGL  L  L  +  Q+ S  
Sbjct: 63  LTLDLNSITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIP 122

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
               +GLT+L  ++L    ++  S     GL++L SL+L   QIT       T LT LT 
Sbjct: 123 ADTFTGLTSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTT 182

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L L   +IT            L  L      +T         ++SLT L+L  N  +T  
Sbjct: 183 LSLQNNQITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLN-KITSI 241

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
           +    +GLT L  L++ N++ITS  +     L  L  L L+      N I  + S    N
Sbjct: 242 SANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLYLD-----GNQITSIPSSSFTN 296

Query: 400 LVS 402
           L +
Sbjct: 297 LTA 299



 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 6/138 (4%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKL 60
           +  +GL+ LT+LS + NN IT+    AF GL  L  L     + T I  G     G+  L
Sbjct: 172 DTFTGLTALTTLSLQ-NNQITSISGTAFTGLTALTCLYFGSNQITSIPAGA--FTGMTSL 228

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             L++ + N IT       +GLT L  L +  +K+T   +    GL  LT L L+G  +T
Sbjct: 229 TYLSL-YLNKITSISANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLYLDGNQIT 287

Query: 121 AACLDSLSALGSLFYLNL 138
           +    S + L +L  L L
Sbjct: 288 SIPSSSFTNLTALTALAL 305


>gi|290975915|ref|XP_002670687.1| predicted protein [Naegleria gruberi]
 gi|284084248|gb|EFC37943.1| predicted protein [Naegleria gruberi]
          Length = 402

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 1/250 (0%)

Query: 85  LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
           L +L IS + + + G  ++  L++LTLLN+    +       +  L  L YL++++  + 
Sbjct: 130 LTTLYISRNNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDIR 189

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
            +G    S++  L  L +  N I +E   HL  LTNL  L       G EG  +++ +  
Sbjct: 190 SNGALYISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMKQ 249

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQI 263
           L  L ++D  +G  G +++S +  L  +N+    I+D  +      L+ L  L ++   I
Sbjct: 250 LINLNINDNFIGDEGAKYISEMKQLTILNIGSNEITDRVNFENFGQLNQLTELYIEDNSI 309

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
                  ++ L  L  LD+ G  +   GA Y+     L  LEI    L + G KHI  + 
Sbjct: 310 QTNACKYISQLQNLNLLDISGNNVDAEGAKYISQMNQLTELEIHTNSLGNEGAKHISTMK 369

Query: 324 SLTLLNLSQN 333
            L  L L  N
Sbjct: 370 ELEYLYLCDN 379



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 120/246 (48%), Gaps = 2/246 (0%)

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           +SAL  L  LN++   + ++G +   K+  L  L++  N+I     +++  L  L SL +
Sbjct: 148 ISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDIRSNGALYISELKQLTSLVI 207

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
            S  I +EG  +L  L NL  LE    + G+ G +H+S +  L ++N++   I D   + 
Sbjct: 208 SSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMKQLINLNINDNFIGDEGAKY 267

Query: 247 LAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
           ++ +  L  LN+ + +ITD         L  LT L +    I  +   Y+   +NL  L+
Sbjct: 268 ISEMKQLTILNIGSNEITDRVNFENFGQLNQLTELYIEDNSIQTNACKYISQLQNLNLLD 327

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
           I G  +   G K+I  ++ LT L +  N  L ++  + IS +  L  L + ++ ++    
Sbjct: 328 ISGNNVDAEGAKYISQMNQLTELEIHTNS-LGNEGAKHISTMKELEYLYLCDNDVSVEVK 386

Query: 366 RHLKPL 371
           +H++ +
Sbjct: 387 QHIREI 392



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 4/214 (1%)

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI- 239
           L +L +    I ++G  +++ L  L  L +S   +   G +++  L  L  +++S   I 
Sbjct: 130 LTTLYISRNNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDIR 189

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           S+G+L  ++ L  L SL + +  I + G A L  LT LT L+         GA ++   K
Sbjct: 190 SNGALY-ISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMK 248

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNS 358
            L +L I    + D G K+I ++  LT+LN+  N  +TD+   E    L  L  L + ++
Sbjct: 249 QLINLNINDNFIGDEGAKYISEMKQLTILNIGSN-EITDRVNFENFGQLNQLTELYIEDN 307

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            I +   +++  L+NL  L +    V A   K +
Sbjct: 308 SIQTNACKYISQLQNLNLLDISGNNVDAEGAKYI 341



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
           K+L +L I    + + G KHI  L  LTLLN+S N N+ ++  + I  L  L  L++S +
Sbjct: 128 KSLTTLYISRNNIENDGAKHISALKQLTLLNISSN-NIEEEGAKYIGKLEKLTYLDISKN 186

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKV 384
            I S G  ++  LK L SL + S  +
Sbjct: 187 DIRSNGALYISELKQLTSLVISSNNI 212


>gi|328950290|ref|YP_004367625.1| hypothetical protein Marky_0765 [Marinithermus hydrothermalis DSM
           14884]
 gi|328450614|gb|AEB11515.1| hypothetical protein Marky_0765 [Marinithermus hydrothermalis DSM
           14884]
          Length = 462

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 154/332 (46%), Gaps = 51/332 (15%)

Query: 4   NLSGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           +L+ L+NLT L      NN +  Q ++  AGL  L +L +    R+   L  L  L +L 
Sbjct: 120 DLAPLANLTRLKRLHLGNNQV--QSLEPLAGLTQLTELRIGN-NRV-ADLAPLADLGRLA 175

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            L + W N +T  D++PL+ LT ++ L ++ ++VTD                        
Sbjct: 176 VL-VAWRNAVT--DLQPLANLTRMRVLSLASNRVTD------------------------ 208

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             L  L+ L  L  L L+  Q++D      + +  LKVL+L FN IT   L  L  L  L
Sbjct: 209 --LTPLAELAQLDTLFLSENQIAD--LAPLAGLTQLKVLSLDFNRITH--LDPLARLVEL 262

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L LD+  I D  L  L GL NL+ L  S+ ++    L  L GL  LE + L+F  I D
Sbjct: 263 TELGLDANQIAD--LTPLAGLTNLQVLSASENRIAD--LTPLGGLVRLEQLGLNFNRIRD 318

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
            S   L GL +LK L L+  QI +  LA L  LT L  L L   RI D     L    NL
Sbjct: 319 IS--ALEGLKALKVLELEGNQIVN--LAPLAGLTELRVLVLGQNRIAD--LTPLGALVNL 372

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
             LE+    +TD G   +  L +L  ++L +N
Sbjct: 373 VQLEVSRNEITDLGA--LAQLENLVRVSLVRN 402



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 126/303 (41%), Gaps = 52/303 (17%)

Query: 3   ENLSGLSNLTSLSFRRNN-------------AITAQGMKAFAGLINLVKLDLERCTRIHG 49
           E L+GL+ LT L    N              A+      A   L  L  L   R   +  
Sbjct: 144 EPLAGLTQLTELRIGNNRVADLAPLADLGRLAVLVAWRNAVTDLQPLANLTRMRVLSLAS 203

Query: 50  GLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
             V +L  L +L  L+  + +    +D+ PL+GLT LK L +  +++T            
Sbjct: 204 NRVTDLTPLAELAQLDTLFLSENQIADLAPLAGLTQLKVLSLDFNRITH----------- 252

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
                          LD L+ L  L  L L+  Q++D      + + +L+VL+   N I 
Sbjct: 253 ---------------LDPLARLVELTELGLDANQIAD--LTPLAGLTNLQVLSASENRIA 295

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           D  L  L GL  LE L L+   I D  +  L GL  LK LEL   Q+    L  L+GLT 
Sbjct: 296 D--LTPLGGLVRLEQLGLNFNRIRD--ISALEGLKALKVLELEGNQI--VNLAPLAGLTE 349

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           L  + L    I+D  L  L  L +L  L +   +ITD G  AL  L  L  + L   R+T
Sbjct: 350 LRVLVLGQNRIAD--LTPLGALVNLVQLEVSRNEITDLG--ALAQLENLVRVSLVRNRVT 405

Query: 289 DSG 291
           + G
Sbjct: 406 NLG 408



 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 29/156 (18%)

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           L+ L++LN   R+I    L  L     L  LDL G RI D     L   + L  L++   
Sbjct: 61  LARLEALNAAERRIQ--SLEGLEHAVNLVTLDLKGNRIAD--LTPLAELRYLEELDLVSN 116

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA------ 363
            +TD  +  + +L+ L  L+L  N     ++LE ++GLT L  L + N+R+         
Sbjct: 117 RITD--LAPLANLTRLKRLHLGNN---QVQSLEPLAGLTQLTELRIGNNRVADLAPLADL 171

Query: 364 -----------GLRHLKPLKNL---RSLTLESCKVT 385
                       +  L+PL NL   R L+L S +VT
Sbjct: 172 GRLAVLVAWRNAVTDLQPLANLTRMRVLSLASNRVT 207


>gi|347547841|ref|YP_004854169.1| putative internalin A [Listeria ivanovii subsp. ivanovii PAM 55]
 gi|346980912|emb|CBW84831.1| Putative internalin A [Listeria ivanovii subsp. ivanovii PAM 55]
          Length = 798

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 184/382 (48%), Gaps = 54/382 (14%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAG---LINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L  +TSL   R      +G+ + AG   L N+ +LD          L  L  L KL SL 
Sbjct: 75  LDGITSLEADR------KGITSIAGVEYLNNVTQLDFSYNQITD--LTPLANLTKLTSLV 126

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT-------------- 110
           +   N I  +D+ PL  LT+L  L +  +K+TD  +A L  L  LT              
Sbjct: 127 MN-NNQI--ADLTPLQNLTSLTELTLFYNKITD--VAPLANLTNLTNLAITDNEISDVTP 181

Query: 111 ---LLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
              L NLEG  +     D   L+ L  L  LNL+R +++D      +K+ +L+ L+L  N
Sbjct: 182 IGNLTNLEGLSIGNKVTDIKPLANLTKLERLNLSRNKITD--ISPVAKLINLQSLSLDNN 239

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           + +D  L  L  LTNL  L+L S  + D G   L  L NLK L L D Q+  S L  +S 
Sbjct: 240 QFSD--LTPLGILTNLTELSLYSNHLSDIG--TLASLTNLKKLNLMDNQI--SNLAPISN 293

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           LTNL  +NLS   ISD  L+ ++ L++L  L +   Q+ D  ++ ++SL  L  L L+  
Sbjct: 294 LTNLTDLNLSTNQISD--LKPISNLTNLTVLQVPTNQLED--ISPISSLPNLEFLTLYTN 349

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           +I+D     L N   L+ L      ++D  V  I +L+SL  L+   N  ++D  L  ++
Sbjct: 350 QISDLSP--LENLTKLKQLFFYDNKVSD--VSPIANLTSLQELSAGTN-QISD--LTPLA 402

Query: 346 GLTGLVSLNVSNSRITSAGLRH 367
            LT L  L +   ++TS  +++
Sbjct: 403 KLTRLTQLGLDKQKVTSQPVKY 424



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 162/356 (45%), Gaps = 66/356 (18%)

Query: 4   NLSGLSNLTSLS----FRRNNAITAQGMKAFAGLINLVKL-----DLERCTRIHGGLVNL 54
           +L+ L NLTSL+    F   N IT   +   A L NL  L     ++   T I G L NL
Sbjct: 134 DLTPLQNLTSLTELTLFY--NKIT--DVAPLANLTNLTNLAITDNEISDVTPI-GNLTNL 188

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLN 113
           +GL           N +TD  +KPL+ LT L+ L +S +K+TD S +A L  LQ L+L N
Sbjct: 189 EGL--------SIGNKVTD--IKPLANLTKLERLNLSRNKITDISPVAKLINLQSLSLDN 238

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
            +   +T      L  L +L  L+L    LSD G    + + +LK LNL  N+I++  L 
Sbjct: 239 NQFSDLTP-----LGILTNLTELSLYSNHLSDIGT--LASLTNLKKLNLMDNQISN--LA 289

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            +  LTNL  LNL +  I D  L  ++ L NL  L++   Q+    +  +S L NLE + 
Sbjct: 290 PISNLTNLTDLNLSTNQISD--LKPISNLTNLTVLQVPTNQL--EDISPISSLPNLEFLT 345

Query: 234 LSFTGISD--------------------GSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
           L    ISD                      +  +A L+SL+ L+    QI+D  L  L  
Sbjct: 346 LYTNQISDLSPLENLTKLKQLFFYDNKVSDVSPIANLTSLQELSAGTNQISD--LTPLAK 403

Query: 274 LTGLTHLDLFGARITDSGAAYLRNF------KNLRSLEICGGGLTDAGVKHIKDLS 323
           LT LT L L   ++T     Y  N       KN+    I    ++D G     D++
Sbjct: 404 LTRLTQLGLDKQKVTSQPVKYQSNLVVPNAVKNVTGALINPATISDNGTYTNPDIT 459


>gi|290978509|ref|XP_002671978.1| predicted protein [Naegleria gruberi]
 gi|284085551|gb|EFC39234.1| predicted protein [Naegleria gruberi]
          Length = 284

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 120/254 (47%), Gaps = 26/254 (10%)

Query: 77  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           K +S L NL +L I  S++ + G+  +  L+ LT LN+    +                 
Sbjct: 57  KSISDLKNLTTLDIGYSRIGNEGLESIGQLENLTRLNIRSNNIGL--------------- 101

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
                       E    + +L  L++G N I +E +  +  LT L SL +D   I +EG 
Sbjct: 102 -----------VEPIINLKTLTALDIGENSIGNEGVKSISKLTELTSLFIDYDDINEEGA 150

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
             L  L NL  L+L+ + +G  G + +   T L+ + LS   IS+  +  L+ L+ L  L
Sbjct: 151 KYLCELPNLTILDLTGSNIGDEGAKFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVDL 210

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
            L    I D GL  L+SL  L +L++ G +ITD G  ++R  +NL+ + I    LT  G 
Sbjct: 211 ILSLNDIGDEGLKHLSSLKMLNYLNVSGNQITDEGVVFIREMENLKRISITNNLLTAVGE 270

Query: 317 KHIKDLSSLTLLNL 330
             I+++S  T L+L
Sbjct: 271 NLIQEMSITTDLDL 284



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 138/291 (47%), Gaps = 33/291 (11%)

Query: 101 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSKIGSLK- 158
           +++K  ++L L       +++  L     L  L  + N+ + +   DG  +   I  LK 
Sbjct: 5   SFIKLFRELELFEGIDNEISSDFLKEFKYLRELTIIRNMAKHESILDGVGRAKSISDLKN 64

Query: 159 --VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQV 215
              L++G++ I +E L  +  L NL  LN+ S  IG  E ++NL  L     L++ +  +
Sbjct: 65  LTTLDIGYSRIGNEGLESIGQLENLTRLNIRSNNIGLVEPIINLKTLT---ALDIGENSI 121

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
           G+ G++ +S LT L S+ + +  I++   + L  L +L  L+L    I D G   +   T
Sbjct: 122 GNEGVKSISKLTELTSLFIDYDDINEEGAKYLCELPNLTILDLTGSNIGDEGAKFIGQST 181

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            L HL L  A I++ G  YL +   L  L +    + D G+KH   LSSL +LN      
Sbjct: 182 KLKHLFLSLADISNVGVNYLSSLNELVDLILSLNDIGDEGLKH---LSSLKMLNY----- 233

Query: 336 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
                            LNVS ++IT  G+  ++ ++NL+ +++ +  +TA
Sbjct: 234 -----------------LNVSGNQITDEGVVFIREMENLKRISITNNLLTA 267



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 9/230 (3%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESL 63
           +S L NLT+L    +  I  +G+++   L NL +L++ R   I  GLV  +  L  L +L
Sbjct: 59  ISDLKNLTTLDIGYS-RIGNEGLESIGQLENLTRLNI-RSNNI--GLVEPIINLKTLTAL 114

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           +I   N I +  +K +S LT L SL I    + + G  YL  L  LT+L+L G  +    
Sbjct: 115 DIGE-NSIGNEGVKSISKLTELTSLFIDYDDINEEGAKYLCELPNLTILDLTGSNIGDEG 173

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
              +     L +L L+   +S+ G    S +  L  L L  N+I DE L HL  L  L  
Sbjct: 174 AKFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVDLILSLNDIGDEGLKHLSSLKMLNY 233

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQVGSSGLRHLSGLTNLE 230
           LN+    I DEG+V +  + NLK + +++   T VG + ++ +S  T+L+
Sbjct: 234 LNVSGNQITDEGVVFIREMENLKRISITNNLLTAVGENLIQEMSITTDLD 283


>gi|359464005|ref|ZP_09252568.1| internalin A protein [Acaryochloris sp. CCMEE 5410]
          Length = 624

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 135/460 (29%), Positives = 212/460 (46%), Gaps = 80/460 (17%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMK----------------AFAGLINLVKL-DLERCTRI 47
           +  L  LTSL    N  +   G+K                 ++ L+N  +L  L    R 
Sbjct: 158 IQDLKQLTSLGLAANKIVDISGLKDLTTLNSLNLRSNAIDDYSVLLNFKELSQLTVSVRE 217

Query: 48  HGGLVNLKGLMKLESLNIKWCNCITD--------------------SDMKPLSGLTNLKS 87
             GL  L+ L  L  L++ + + I+D                    SD+  LS L  L  
Sbjct: 218 ATGLAFLQDLRGLTYLDLSYNHWISDISVLRHLPKLTHLDLGSNQISDIAVLSDLPQLTH 277

Query: 88  LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 147
           L +S +K++D  ++ L+ LQ L  L++    +    +  L  L  L  L+++   +SD  
Sbjct: 278 LSLSANKISD--LSVLQTLQGLESLDISANEIADIAI--LQNLQGLTQLDISSNDVSD-- 331

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTGLC 203
                 + +L  LN+  NE+ D  +  L+GLT L +L++    + +    +GL  LT L 
Sbjct: 332 ISALQDLTTLTQLNVSSNEVIDYSV--LQGLTELTNLDVSDNQLSEISDLQGLHALTSL- 388

Query: 204 NLKCLELSDTQV---------------GSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
           NL   +LSD  V                 S +  L    +L ++NLSFT I+D  L  L 
Sbjct: 389 NLSYNQLSDISVLQDLKQLATLNLSYNPVSDIAVLQNFKDLTTLNLSFTQITD--LSTLQ 446

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
           GL  L SL+L + QI D  ++AL  L GL  L++   +++D  A  LRN K L SL +  
Sbjct: 447 GLKGLTSLDLHSNQIRD--ISALQDLKGLYRLNVSDNQLSDISA--LRNLKGLFSLNLSI 502

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
             ++D  +  ++DL+ LT LN S N  L+D  + ++ GLT L SL++  ++I  A +  L
Sbjct: 503 NQISD--IAALQDLTRLTSLNASHN-RLSD--ISVLQGLTRLNSLDLGANQI--ADISVL 555

Query: 369 KPLKNLRSLTLESCKVTA-NDIKRLQSRDL-PNLVSFRPE 406
           + +  L SL L    V+   D K L S +L  N +S  PE
Sbjct: 556 QNIPGLFSLDLRFSDVSVFQDFKGLTSLNLSSNQISSVPE 595



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 144/305 (47%), Gaps = 48/305 (15%)

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L+L  ++G  +  A ++    L +L+  ++   ++       F+ +  L  + L   ++T
Sbjct: 55  LSLQGVDGHELVDASIEQYPHLSALYLFDIVSPEIV-----PFASLPGLSTIALSGQDVT 109

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
                +L+  TNL ++ L +  I D     L+ L NL  L+LS+ Q+    +  +  L  
Sbjct: 110 --ATSYLQQATNLTTVYLKTTHISDYSF--LSDLKNLTHLDLSNNQIA--DISFIQDLKQ 163

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD--------------------TGL 268
           L S+ L+   I D  +  L  L++L SLNL +  I D                    TGL
Sbjct: 164 LTSLGLAANKIVD--ISGLKDLTTLNSLNLRSNAIDDYSVLLNFKELSQLTVSVREATGL 221

Query: 269 AALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
           A L  L GLT+LDL +   I+D   + LR+   L  L++    ++D  V  + DL  LT 
Sbjct: 222 AFLQDLRGLTYLDLSYNHWISD--ISVLRHLPKLTHLDLGSNQISDIAV--LSDLPQLTH 277

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387
           L+LS N  ++D  L ++  L GL SL++S + I    +     L+NL+ LT     +++N
Sbjct: 278 LSLSAN-KISD--LSVLQTLQGLESLDISANEIADIAI-----LQNLQGLT--QLDISSN 327

Query: 388 DIKRL 392
           D+  +
Sbjct: 328 DVSDI 332


>gi|355785801|gb|EHH65984.1| F-box and leucine-rich repeat protein 14 [Macaca fascicularis]
          Length = 330

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 182/350 (52%), Gaps = 50/350 (14%)

Query: 82  LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
           + N++SL +S C  +TD+G+ +                        +  +GSL  LNL+ 
Sbjct: 1   MANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALNLSL 38

Query: 141 C-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEG 195
           C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + D G
Sbjct: 39  CKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVG 98

Query: 196 LVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSL 244
           + +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD  L
Sbjct: 99  IGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGL 158

Query: 245 RKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFK 299
             L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +   
Sbjct: 159 LHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLD 217

Query: 300 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 357
            L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++  
Sbjct: 218 GLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 277

Query: 358 -SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
            +RIT  GL  +  L  L+ L L   ++T  D ++    D   L + R  
Sbjct: 278 CTRITKRGLERITQLPCLKVLNLGLWQMT--DSEKEARGDFSPLFTVRTR 325



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 151/291 (51%), Gaps = 27/291 (9%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L +LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL
Sbjct: 31  LRALNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNL 88

Query: 115 EGCPVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLG 163
             C   +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL 
Sbjct: 89  RSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLS 148

Query: 164 F-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSG 219
           F   I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   
Sbjct: 149 FCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQS 208

Query: 220 LRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LT 275
           L +++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+
Sbjct: 209 LAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLS 268

Query: 276 GLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
            LT +DL+G  RIT  G   +     L+ L +    +TD+  +   D S L
Sbjct: 269 QLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKEARGDFSPL 319



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 79  GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 134

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 135 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 194

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +   ++  L+ LN+G    
Sbjct: 195 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 254

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 255 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 308


>gi|290994276|ref|XP_002679758.1| predicted protein [Naegleria gruberi]
 gi|284093376|gb|EFC47014.1| predicted protein [Naegleria gruberi]
          Length = 205

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 1/201 (0%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L SLN+     GDE    ++ +  L  L++S  ++G  G ++LS +  L S+N+   
Sbjct: 1   MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I D   + ++    L SLN+   QI       ++ +  LT L++   RI   GA ++  
Sbjct: 61  EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
            + L SL+I G  + D G K I ++  LT L++S N  + D+  + IS +  L+SLN+  
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYN-RIGDEGAKFISEMKQLISLNIRG 179

Query: 358 SRITSAGLRHLKPLKNLRSLT 378
           +RI   G++++  +K L SLT
Sbjct: 180 NRIGDEGVKYISEMKQLTSLT 200



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 100/199 (50%)

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
           +  L  LN++  +  D+  +  S++  L  L++  N I DE   +L  +  L SLN+   
Sbjct: 1   MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
            IGDEG   ++    L  L +  TQ+G    + +S +  L S+N+S   I     + ++ 
Sbjct: 61  EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           +  L SL++   +I D G   ++ +  LT LD+   RI D GA ++   K L SL I G 
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGN 180

Query: 310 GLTDAGVKHIKDLSSLTLL 328
            + D GVK+I ++  LT L
Sbjct: 181 RIGDEGVKYISEMKQLTSL 199



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 99/203 (48%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           +  L SL IS ++  D     +  +++LT L++ G  +       LS +  L  LN+   
Sbjct: 1   MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           ++ D+G +  S+   L  LN+ F +I  E    +  +  L SLN+    I  EG   ++ 
Sbjct: 61  EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           +  L  L++S  ++G  G + +S +  L S+++S+  I D   + ++ +  L SLN+   
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGN 180

Query: 262 QITDTGLAALTSLTGLTHLDLFG 284
           +I D G+  ++ +  LT L   G
Sbjct: 181 RIGDEGVKYISEMKQLTSLTYKG 203



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 11/157 (7%)

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           +  L SLN+   +  D     ++ +  LT LD+ G RI D GA YL   K L SL I   
Sbjct: 1   MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
            + D G K I +   L  LN+   C   +  +  +LIS +  L SLN+S++RI   G + 
Sbjct: 61  EIGDEGAKLISETRQLASLNI---CFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKW 117

Query: 368 LKPLKNLRSLTLESCKV------TANDIKRLQSRDLP 398
           +  ++ L SL +   ++      T +++K+L S D+ 
Sbjct: 118 ISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDIS 154



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 1/159 (0%)

Query: 50  GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 109
           G   L  + +L SLNI   N I D   K +S    L SL I  +++       +  +++L
Sbjct: 42  GAKYLSEMKQLISLNIG-ENEIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQL 100

Query: 110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
           T LN+    +       +S +  L  L+++  ++ D+G +  S++  L  L++ +N I D
Sbjct: 101 TSLNISDNRICVEGAKWISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGD 160

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
           E    +  +  L SLN+    IGDEG+  ++ +  L  L
Sbjct: 161 EGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLTSL 199


>gi|18568223|gb|AAL75966.1|AF467462_1 PpaB [Danio rerio]
          Length = 392

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 109/356 (30%), Positives = 188/356 (52%), Gaps = 54/356 (15%)

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTL 111
           +G+ ++++L+++       S    + G+ N++SL +S C  +TD+G+  A+++ +  L +
Sbjct: 66  RGIRRVQTLSLR------RSLSYVIQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 119

Query: 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITD 169
           LNL  C                        Q++D    + ++ + +L+VL LG  + IT+
Sbjct: 120 LNLSLCK-----------------------QITDSSLGRIAQYLKNLEVLELGGCSNITN 156

Query: 170 ECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLC--------NLKCLELSDTQ-VGSS 218
             L+ +  GL  L+SLNL SC  + D G+ +L G+         +L+ L L D Q +   
Sbjct: 157 TGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDL 216

Query: 219 GLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 275
            L+H+S GLT L+ +NLSF G ISD  +  L+ ++SL SLNL +   I+DTG+  L   T
Sbjct: 217 SLKHISKGLTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGT 276

Query: 276 -GLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLS 331
             L+ LD+ F  +I D   A + +    L+SL +C   ++D G+ + ++ +  L  LN+ 
Sbjct: 277 LRLSGLDVSFCDKIGDQSLACIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIG 336

Query: 332 QNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 385
           Q   +TDK LELI+  LT L  +++   ++IT  GL  +  L  L+   L   ++T
Sbjct: 337 QCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNLGLWQMT 392



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 146/288 (50%), Gaps = 50/288 (17%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLK-- 104
           ++G+  +ESLN+  C  +TD+ +    +  + +L+ L +S C ++TDS +     YLK  
Sbjct: 84  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNL 143

Query: 105 ---------------------GLQKLTLLNLEGC-PVTAACLDSLSALG--------SLF 134
                                GL +L  LNL  C  V+   +  L+ +         SL 
Sbjct: 144 EVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLE 203

Query: 135 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 190
           YL L  CQ L+D   +  SK +  LKVLNL F   I+D  ++HL  +T+L SLNL SC  
Sbjct: 204 YLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDN 263

Query: 191 IGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RK 246
           I D G+++L  G   L  L++S   ++G   L  ++ GL  L+S++L    ISD  + R 
Sbjct: 264 ISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLACIAQGLYQLKSLSLCSCHISDDGINRM 323

Query: 247 LAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 291
           +  +  L++LN+    +ITD GL  +   LT LT +DL+G  +IT  G
Sbjct: 324 VRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRG 371



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 22/229 (9%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L SL+ R    ++  G+   AG+        ++L  L L+ C ++    L ++ KG
Sbjct: 165 GLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKG 224

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L KL+ LN+ +C  I+D+ M  LS +T+L SL + SC  ++D+GI +L  G  +L+ L++
Sbjct: 225 LTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDV 284

Query: 115 EGC----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEIT 168
             C      + AC+     L  L  L+L  C +SDDG  +  + +  L+ LN+G    IT
Sbjct: 285 SFCDKIGDQSLACIA--QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRIT 342

Query: 169 DECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 215
           D+ L  +   LT L  ++L  C  I   GL  +T L  LK   L   Q+
Sbjct: 343 DKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNLGLWQM 391



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 124/245 (50%), Gaps = 32/245 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    R    
Sbjct: 84  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 139

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 275
           L NLE + L   + I++  L  +A GL  LKSLNL + R ++D G+  L  +T       
Sbjct: 140 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 199

Query: 276 -GLTHLDLFGA-RITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             L +L L    ++TD    ++ +    L+  +L  CGG ++DAG+ H+  ++SL  LNL
Sbjct: 200 LSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGG-ISDAGMIHLSHMTSLWSLNL 258

Query: 331 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 387
               N++D   + L  G   L  L+VS   +I    L  + + L  L+SL+L SC ++ +
Sbjct: 259 RSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLACIAQGLYQLKSLSLCSCHISDD 318

Query: 388 DIKRL 392
            I R+
Sbjct: 319 GINRM 323


>gi|290979547|ref|XP_002672495.1| predicted protein [Naegleria gruberi]
 gi|284086072|gb|EFC39751.1| predicted protein [Naegleria gruberi]
          Length = 665

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 128/265 (48%), Gaps = 20/265 (7%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           IT   ++ ++ L  +  + I+  ++ D G + +  +++LT L++     T    + + ++
Sbjct: 398 ITHEVLQNITKLEKVNYVDIAAIRIGDEGASMIGQMKQLTYLDI---SFTGISYNGMRSI 454

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
           G L   NL +   S D  E +S    + V             +HL+ L  L  L++    
Sbjct: 455 GQL--TNLTQLIFSSDDYENYSAPKGVTVA------------IHLRNLKKLTHLDITYNE 500

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           IGDEG   ++ L NL  LE+ + Q+ + G + +S L NL  +N+S    +  S++ L  L
Sbjct: 501 IGDEGSQFISELLNLTYLEMPNNQLRNEGFKMISKLENLTHLNISNNDFNCESMKHLCEL 560

Query: 251 SSLKSLNLDARQIT--DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
            +L SL      IT  D  L A   L  LT LDL    I + GA Y+   K L+SL++  
Sbjct: 561 KNLTSLEAFNTGITSNDVKLIA-NHLKYLTELDLSCNDIGNEGAKYVSELKQLQSLQLAQ 619

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQN 333
             L   GVK++  L  LT L++S+N
Sbjct: 620 TNLDSEGVKYLVRLDQLTDLDVSEN 644



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 9/235 (3%)

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           +IT E L ++  L  +  +++ +  IGDEG   +  +  L  L++S T +  +G+R +  
Sbjct: 397 KITHEVLQNITKLEKVNYVDIAAIRIGDEGASMIGQMKQLTYLDISFTGISYNGMRSIGQ 456

Query: 226 LTNLESINLSFTGISDGSLRK-------LAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
           LTNL  +  S     + S  K       L  L  L  L++   +I D G   ++ L  LT
Sbjct: 457 LTNLTQLIFSSDDYENYSAPKGVTVAIHLRNLKKLTHLDITYNEIGDEGSQFISELLNLT 516

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
           +L++   ++ + G   +   +NL  L I         +KH+ +L +LT L  + N  +T 
Sbjct: 517 YLEMPNNQLRNEGFKMISKLENLTHLNISNNDFNCESMKHLCELKNLTSLE-AFNTGITS 575

Query: 339 KTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
             ++LI+  L  L  L++S + I + G +++  LK L+SL L    + +  +K L
Sbjct: 576 NDVKLIANHLKYLTELDLSCNDIGNEGAKYVSELKQLQSLQLAQTNLDSEGVKYL 630


>gi|334117579|ref|ZP_08491670.1| Adenylate cyclase [Microcoleus vaginatus FGP-2]
 gi|333460688|gb|EGK89296.1| Adenylate cyclase [Microcoleus vaginatus FGP-2]
          Length = 516

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 140/421 (33%), Positives = 205/421 (48%), Gaps = 57/421 (13%)

Query: 5   LSGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           L+ L+NLT L    N    A G +K  A L NL +L+L       G +  L  L KL  L
Sbjct: 105 LASLTNLTVLDLGFN----ALGDIKPLASLTNLTRLNL--FGNQIGDIKPLASLTKLTEL 158

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
            +   N I   D+KPL+ LTNL  L +S ++V D  I  L  L  LT L+L+G  +    
Sbjct: 159 TLN-NNKI--GDIKPLASLTNLTDLVLSSNQVGD--IKPLASLTNLTRLDLDGNVI--GD 211

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           +  L++L +L  L+L+   + D   +  + + +L  L+L  N+I D  +  L  LTNL  
Sbjct: 212 IKPLASLTNLTRLDLDGNVIGD--IKPLASLTNLSSLDLDDNQIGD--IKPLASLTNLMG 267

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS--------------------SGLRHL 223
           L+L    IGD  +  L  L NL  L L D Q+G                       ++ L
Sbjct: 268 LDLRRIVIGD--IKPLASLTNLTDLSLDDNQIGDIKPLASLTNLTRLVLSSNQIRDIKPL 325

Query: 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
           + LTNL S++LS   I  G ++ LA L++L SL+L+  +I D  +  L SLT LT L L 
Sbjct: 326 ASLTNLSSLDLSGNVI--GDIKPLASLTNLSSLDLNNNKIGD--IKPLASLTKLTELTLS 381

Query: 284 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
           G  I D     L +  NL SL + G  + D  +K +  L++L+ L L  N  + D  ++ 
Sbjct: 382 GNVIGD--IKPLASLTNLSSLVLFGNVIGD--IKPLASLTNLSSLVLDGNV-IGD--IKA 434

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
           ++ LT L  L +S++ I    ++ L  L NL SL L    +   DIK L S  L NL+  
Sbjct: 435 LASLTNLAGLFLSSNVI--GDIKPLASLTNLSSLDLSDNHI--GDIKPLAS--LTNLIEL 488

Query: 404 R 404
            
Sbjct: 489 H 489



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 167/340 (49%), Gaps = 45/340 (13%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           D+ PL+ LTNL  L +  + + D  I  L  L  LT LNL G  +    +  L++L  L 
Sbjct: 101 DITPLASLTNLTVLDLGFNALGD--IKPLASLTNLTRLNLFGNQI--GDIKPLASLTKLT 156

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD- 193
            L LN  ++ D   +  + + +L  L L  N++ D  +  L  LTNL  L+LD   IGD 
Sbjct: 157 ELTLNNNKIGD--IKPLASLTNLTDLVLSSNQVGD--IKPLASLTNLTRLDLDGNVIGDI 212

Query: 194 ---EGLVNLT----------------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
                L NLT                 L NL  L+L D Q+G   ++ L+ LTNL  ++L
Sbjct: 213 KPLASLTNLTRLDLDGNVIGDIKPLASLTNLSSLDLDDNQIGD--IKPLASLTNLMGLDL 270

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
               I  G ++ LA L++L  L+LD  QI D  +  L SLT LT L L   +I D     
Sbjct: 271 RRIVI--GDIKPLASLTNLTDLSLDDNQIGD--IKPLASLTNLTRLVLSSNQIRD--IKP 324

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           L +  NL SL++ G  + D  +K +  L++L+ L+L+ N  + D  ++ ++ LT L  L 
Sbjct: 325 LASLTNLSSLDLSGNVIGD--IKPLASLTNLSSLDLNNN-KIGD--IKPLASLTKLTELT 379

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
           +S + I    ++ L  L NL SL L    +   DIK L S
Sbjct: 380 LSGNVI--GDIKPLASLTNLSSLVLFGNVI--GDIKPLAS 415


>gi|430746592|ref|YP_007205721.1| WD40 repeat-containing protein [Singulisphaera acidiphila DSM
           18658]
 gi|430018312|gb|AGA30026.1| WD40 repeat-containing protein [Singulisphaera acidiphila DSM
           18658]
          Length = 830

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 111/202 (54%), Gaps = 15/202 (7%)

Query: 182 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGI 239
           + L +DS  GI D GL +L  L NL+ L +  T ++   GL HL+ L  L  +NLS +G+
Sbjct: 623 KDLRIDSEEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLS-SGL 681

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           SD ++ +LA L  LK L+LD   + D+G+AAL  +T LT L L   ++TD+G + L+   
Sbjct: 682 SDKAVARLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMV 741

Query: 300 NLRSL-----EICGGGLTDAGVKHIKDLSSLTLLNLSQ--NCNLTDKTLELISGLTGLVS 352
            +  L      + G GL  A +K +  L SL+ + ++Q     LTD  L  +  L  L  
Sbjct: 742 QMERLSLGNVSVRGPGL--ANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDF 799

Query: 353 LNVSNSRITSAGL---RHLKPL 371
           LN+  + +T AG+   R +KPL
Sbjct: 800 LNLGETSVTDAGMAAARKIKPL 821



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 102/232 (43%), Gaps = 44/232 (18%)

Query: 71  ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
           I D+ ++ L+ L NL+ L I   +++   G+A+L  L KLT LNL               
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLS-------------- 678

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
                        LSD    + + +  LK L+L   ++ D  +  LKG+T L  L+LD  
Sbjct: 679 -----------SGLSDKAVARLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDET 727

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
            + D GL  L G+  ++ L L +  V   GL +L G++ L+S  LSF  ++         
Sbjct: 728 KVTDAGLSALKGMVQMERLSLGNVSVRGPGLANLKGMSRLKS--LSFVAVA--------- 776

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
                        +TD GL  L +L  L  L+L    +TD+G A  R  K L
Sbjct: 777 -------QYKPSPLTDAGLVHLENLPALDFLNLGETSVTDAGMAAARKIKPL 821



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 9/186 (4%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 77
              I   G++  A L+NL  L + +  RI G GL +L  L KL  LN+   + ++D  + 
Sbjct: 630 EEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL--SSGLSDKAVA 687

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
            L+ L  LK L +  + + DSG+A LKG+  LT L+L+   VT A L +L  +  +  L+
Sbjct: 688 RLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMVQMERLS 747

Query: 138 LNRCQLSDDGCEKFSKIGSLK------VLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           L    +   G      +  LK      V     + +TD  LVHL+ L  L+ LNL    +
Sbjct: 748 LGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSV 807

Query: 192 GDEGLV 197
            D G+ 
Sbjct: 808 TDAGMA 813



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 8/192 (4%)

Query: 143 LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           + D G E  +++ +L+ L++     I    L HL  L  L  LNL S G+ D+ +  L  
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL-SSGLSDKAVARLAP 691

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L  LK L L  T +  SG+  L G+T L  ++L  T ++D  L  L G+  ++ L+L   
Sbjct: 692 LKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMVQMERLSLGNV 751

Query: 262 QITDTGLAALTSLTGLTHLDLFG------ARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
            +   GLA L  ++ L  L          + +TD+G  +L N   L  L +    +TDAG
Sbjct: 752 SVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSVTDAG 811

Query: 316 VKHIKDLSSLTL 327
           +   + +  L L
Sbjct: 812 MAAARKIKPLIL 823



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 10/160 (6%)

Query: 254 KSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGL 311
           K L +D+ + I D GL  L  L  L  L +   ARI   G A+L     L  L +  G L
Sbjct: 623 KDLRIDSEEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLSSG-L 681

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
           +D  V  +  L  L  L+L  + +L D  +  + G+T L  L++  +++T AGL  LK +
Sbjct: 682 SDKAVARLAPLKELKRLSL-DHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGM 740

Query: 372 KNLRSLTLESCKVTA------NDIKRLQSRDLPNLVSFRP 405
             +  L+L +  V          + RL+S     +  ++P
Sbjct: 741 VQMERLSLGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKP 780



 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 6/112 (5%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L G++ LT LS      +T  G+ A  G++ + +L L   +    GL NLKG+ +L+SL+
Sbjct: 713 LKGMTTLTELSLDETK-VTDAGLSALKGMVQMERLSLGNVSVRGPGLANLKGMSRLKSLS 771

Query: 65  IKWC-----NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 111
                    + +TD+ +  L  L  L  L +  + VTD+G+A  + ++ L L
Sbjct: 772 FVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSVTDAGMAAARKIKPLIL 823


>gi|290976088|ref|XP_002670773.1| predicted protein [Naegleria gruberi]
 gi|284084335|gb|EFC38029.1| predicted protein [Naegleria gruberi]
          Length = 681

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 132/274 (48%), Gaps = 25/274 (9%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L  L++ +C  I+D ++  +S +  LK L +S ++ +   +  +K +++LT+L++    +
Sbjct: 415 LRRLHVVFCK-ISDREISVISQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTKL 473

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
               ++ +S + +L  L +N   L   G E  +++  L+ L +G N I DE +  +  + 
Sbjct: 474 KCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHMK 533

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           NL  L++ S GIG+E                     G++ +  L GLT    IN+ F  I
Sbjct: 534 NLTKLDVSSNGIGEE---------------------GANSISQLKGLT---FINVGFNLI 569

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
                  +  L  L +L ++  +I  TG   ++ +  +T LD+    I D GA Y+   +
Sbjct: 570 GQQGAESIGELEQLTTLLINNCEIGPTGAKFISKMQRVTELDISLNDIQDEGAHYISELE 629

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            L  L +    +TD G+K I  + +L LL++S N
Sbjct: 630 KLSILYVNNNEITDEGLKAITQMKNLQLLDVSGN 663



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 127/260 (48%), Gaps = 1/260 (0%)

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           S++    L  L++  C++SD      S++  LK LN+  N  + E +  +K +  L  L+
Sbjct: 408 SIARCEHLRRLHVVFCKISDREISVISQMKQLKELNVSGNRFSFESVCKIKDMKQLTILD 467

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           +    +    +  ++G+ NL  L ++D  +G  G   ++ L  L  + +    I D  + 
Sbjct: 468 MSYTKLKCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMY 527

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
            ++ + +L  L++ +  I + G  +++ L GLT +++    I   GA  +   + L +L 
Sbjct: 528 SISHMKNLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELEQLTTLL 587

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
           I    +   G K I  +  +T L++S N ++ D+    IS L  L  L V+N+ IT  GL
Sbjct: 588 INNCEIGPTGAKFISKMQRVTELDISLN-DIQDEGAHYISELEKLSILYVNNNEITDEGL 646

Query: 366 RHLKPLKNLRSLTLESCKVT 385
           + +  +KNL+ L +   K++
Sbjct: 647 KAITQMKNLQLLDVSGNKIS 666



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 131/276 (47%), Gaps = 4/276 (1%)

Query: 89  QISCSKVTDSGIAYLKGL---QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 145
           Q     V DS     K +   + L  L++  C ++   +  +S +  L  LN++  + S 
Sbjct: 392 QTKSFSVVDSAFDRSKSIARCEHLRRLHVVFCKISDREISVISQMKQLKELNVSGNRFSF 451

Query: 146 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
           +   K   +  L +L++ + ++    +  + G+ NL SL ++   +G +G   +  L  L
Sbjct: 452 ESVCKIKDMKQLTILDMSYTKLKCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQL 511

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
           + L +    +G  G+  +S + NL  +++S  GI +     ++ L  L  +N+    I  
Sbjct: 512 RELFIGSNNIGDEGMYSISHMKNLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQ 571

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
            G  ++  L  LT L +    I  +GA ++   + +  L+I    + D G  +I +L  L
Sbjct: 572 QGAESIGELEQLTTLLINNCEIGPTGAKFISKMQRVTELDISLNDIQDEGAHYISELEKL 631

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           ++L ++ N  +TD+ L+ I+ +  L  L+VS ++I+
Sbjct: 632 SILYVNNN-EITDEGLKAITQMKNLQLLDVSGNKIS 666



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 2/193 (1%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
            E +SG+ NLTSL    +N +  QG +  A L  L +L +        G+ ++  +  L 
Sbjct: 478 VEVVSGMRNLTSLRIN-DNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHMKNLT 536

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            L++   N I +     +S L  L  + +  + +   G   +  L++LT L +  C +  
Sbjct: 537 KLDVS-SNGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELEQLTTLLINNCEIGP 595

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
                +S +  +  L+++   + D+G    S++  L +L +  NEITDE L  +  + NL
Sbjct: 596 TGAKFISKMQRVTELDISLNDIQDEGAHYISELEKLSILYVNNNEITDEGLKAITQMKNL 655

Query: 182 ESLNLDSCGIGDE 194
           + L++    I DE
Sbjct: 656 QLLDVSGNKISDE 668


>gi|426371210|ref|XP_004052544.1| PREDICTED: F-box/LRR-repeat protein 14 [Gorilla gorilla gorilla]
          Length = 307

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 161/288 (55%), Gaps = 25/288 (8%)

Query: 125 DSLSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTN 180
           D    +GSL  LNL+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  
Sbjct: 17  DPEKEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQR 76

Query: 181 LESLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNL 229
           L+SLNL SC  + D G+ +L G+          L+ L L D Q +    L+H+S GLT L
Sbjct: 77  LKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGL 136

Query: 230 ESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FG 284
             +NLSF G ISD  L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F 
Sbjct: 137 RLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFC 195

Query: 285 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLE 342
            ++ D   AY+ +    L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LE
Sbjct: 196 DKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLE 255

Query: 343 LIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           LI+  L+ L  +++   +RIT  GL  +  L  L+ L L   ++T ++
Sbjct: 256 LIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 303



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 149/285 (52%), Gaps = 27/285 (9%)

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKL 109
           K +  L +LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L
Sbjct: 20  KEIGSLRALNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRL 77

Query: 110 TLLNLEGCPVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLK 158
             LNL  C   +       A +   +A G   L  L L  CQ L+D   +  S+ +  L+
Sbjct: 78  KSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLR 137

Query: 159 VLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-Q 214
           +LNL F   I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +
Sbjct: 138 LLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDK 197

Query: 215 VGSSGLRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAAL 271
           VG   L +++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +
Sbjct: 198 VGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELI 257

Query: 272 TS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
              L+ LT +DL+G  RIT  G   +     L+ L +    +TD+
Sbjct: 258 AEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 302



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 73  GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 128

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 129 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 188

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +   ++  L+ LN+G    
Sbjct: 189 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 248

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 249 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 302



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 25/205 (12%)

Query: 207 CLELSDTQVGSSGLRHLSGLTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQ 262
           C +++D+ +G    ++L GL  LE     N++ TG+    L    GL  LKSLNL + R 
Sbjct: 33  CKQITDSSLGRIA-QYLKGLEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRH 87

Query: 263 ITDTGLAALTSLT--------GLTHLDLFGA-RITDSGAAYL-RNFKNLR--SLEICGGG 310
           ++D G+  L  +T        GL  L L    ++TD    ++ R    LR  +L  CGG 
Sbjct: 88  LSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG- 146

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL 368
           ++DAG+ H+  + SL  LNL    N++D   + L  G   L  L+VS   ++    L ++
Sbjct: 147 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 206

Query: 369 -KPLKNLRSLTLESCKVTANDIKRL 392
            + L  L+SL+L SC ++ + I R+
Sbjct: 207 AQGLDGLKSLSLCSCHISDDGINRM 231


>gi|41393121|ref|NP_958890.1| F-box and leucine-rich repeat protein 14a [Danio rerio]
 gi|37681873|gb|AAQ97814.1| hypothetical protein MGC40195 [Danio rerio]
 gi|66911816|gb|AAH96775.1| F-box and leucine-rich repeat protein 14a [Danio rerio]
 gi|157423043|gb|AAI53540.1| Fbxl14a protein [Danio rerio]
 gi|182891432|gb|AAI64514.1| Fbxl14a protein [Danio rerio]
          Length = 411

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 176/332 (53%), Gaps = 48/332 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           + G+ N++SL +S C  +TD+G+  A+++ +  L +LNL  C                  
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCK----------------- 128

Query: 136 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 191
                 Q++D    + ++ + +L++L+LG  + IT+  L+ +  GL NL+SLNL SC  +
Sbjct: 129 ------QITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHV 182

Query: 192 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 240
            D G+ +L G+          L+ L L D Q +    L+H+S GL  L+ +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGIS 242

Query: 241 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDL-FGARITDSGAAYL-R 296
           D  +  L+ ++ L +LNL +   I+DTG+  L+     L  LD+ F  ++ D   AY+ +
Sbjct: 243 DAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  ++
Sbjct: 303 GLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 385
           +   ++IT  GL  +  L  L+ L L   ++T
Sbjct: 363 LYGCTKITKRGLERITQLPCLKVLNLGLWQMT 394



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 139/256 (54%), Gaps = 23/256 (8%)

Query: 33  LINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN------ 84
           L NL  LDL  C+ I   G L+   GL  L+SLN++ C  ++D  +  L+G+T       
Sbjct: 142 LKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201

Query: 85  --LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLN 139
             L+ L +  C K+TD  + ++ KGL KL +LNL  C  ++ A +  LS +  L+ LNL 
Sbjct: 202 LTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTQLWTLNLR 261

Query: 140 RCQ-LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDE 194
            C  +SD G    S +G+L++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+
Sbjct: 262 SCDNISDTGIMHLS-MGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDD 320

Query: 195 GLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGL 250
           G+  +   +  LK L +    ++   GL  ++  LT L  I+L   T I+   L ++  L
Sbjct: 321 GINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQL 380

Query: 251 SSLKSLNLDARQITDT 266
             LK LNL   Q+T+ 
Sbjct: 381 PCLKVLNLGLWQMTEV 396



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 160/322 (49%), Gaps = 52/322 (16%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLK-- 104
           ++G+  +ESLN+  C  +TD+ +    +  + +L+ L +S C ++TDS +     YLK  
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRIAQYLKNL 145

Query: 105 ---------------------GLQKLTLLNLEGC-PVTAACLDSLSALG--------SLF 134
                                GL  L  LNL  C  V+   +  L+ +         +L 
Sbjct: 146 ELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLE 205

Query: 135 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 190
           +L L  CQ L+D   +  SK +  LKVLNL F   I+D  ++HL  +T L +LNL SC  
Sbjct: 206 HLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDN 265

Query: 191 IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RK 246
           I D G+++L+ G   L  L++S   +VG   L +++ GL  L+S++L    ISD  + R 
Sbjct: 266 ISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRM 325

Query: 247 LAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRS 303
           +  +  LK+LN+    +ITD GL  +   LT LT +DL+G  +IT  G   +     L+ 
Sbjct: 326 VRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKV 385

Query: 304 LEICGGGLTDAGVKHIKDLSSL 325
           L +    +T+  VK + D S +
Sbjct: 386 LNLGLWQMTE--VKGLGDASEI 405



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 22/229 (9%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL NL SL+ R    ++  G+   AG+        + L  L L+ C ++    L ++ KG
Sbjct: 167 GLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKG 226

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L KL+ LN+ +C  I+D+ M  LS +T L +L + SC  ++D+GI +L  G  +L  L++
Sbjct: 227 LNKLKVLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDV 286

Query: 115 EGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEIT 168
             C        SL+ +    Y    L+L  C +SDDG  +  + +  LK LN+G    IT
Sbjct: 287 SFCDKVGD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRIT 344

Query: 169 DECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 215
           D+ L  +   LT L  ++L  C  I   GL  +T L  LK L L   Q+
Sbjct: 345 DKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQM 393



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 32/245 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   + ++  L  L    C +++D+ +G    R    
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLG----RIAQY 141

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 275
           L NLE ++L   + I++  L  +A GL +LKSLNL + R ++D G+  L  +T       
Sbjct: 142 LKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201

Query: 276 -GLTHLDLFG-ARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             L HL L    ++TD    ++    N   + +L  CGG ++DAG+ H+  ++ L  LNL
Sbjct: 202 LTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGG-ISDAGMIHLSHMTQLWTLNL 260

Query: 331 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 387
               N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDD 320

Query: 388 DIKRL 392
            I R+
Sbjct: 321 GINRM 325



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 91/170 (53%), Gaps = 7/170 (4%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLN 64
           GL+ L  L+      I+  GM   + +  L  L+L  C  I   G+++L  G ++L  L+
Sbjct: 226 GLNKLKVLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLD 285

Query: 65  IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTA 121
           + +C+ + D  +  ++ GL  LKSL +    ++D GI   ++ + +L  LN+  C  +T 
Sbjct: 286 VSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITD 345

Query: 122 ACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 169
             L+ ++  L  L  ++L  C +++  G E+ +++  LKVLNLG  ++T+
Sbjct: 346 KGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 395


>gi|87307769|ref|ZP_01089912.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
 gi|87289383|gb|EAQ81274.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
          Length = 1283

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 99/381 (25%), Positives = 158/381 (41%), Gaps = 58/381 (15%)

Query: 50   GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 109
            GL   +   K+ +L+++    ITD  +        LKS+++  + VTD+G+   K   KL
Sbjct: 917  GLAAFQNSKKIVNLHLEHTK-ITDVGLAYFHDCRELKSIRLRQTSVTDAGVLPFKHCSKL 975

Query: 110  TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK---------------- 153
              L+L    VTAA ++ L A        L  C+++ DG  K                   
Sbjct: 976  EELSLATTNVTAAAVEELRAA-------LPNCKITWDGDAKTESPEEKNSDNLAAKYVLS 1028

Query: 154  IGSLKVLNLGFNEI------------------------TDECLVHLKGLTNLESLNLD-S 188
            IG +  LN G  +I                        TD+ L       ++ SL +  +
Sbjct: 1029 IGGIVRLNGGGTDIHSATELPPAPFRLTHVNFNLCKKATDDGLAVFANCKDIVSLTMRFT 1088

Query: 189  CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
              +   GL       +LK L  + +   S+GL  L+   NLE I+L     +   LR +A
Sbjct: 1089 PNVTGRGLAYFKNCKDLKELNCNYSPYVSAGLPLLANCKNLEKISLMGVKFTREELRPIA 1148

Query: 249  GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
             L  L  +NL A  + D  L+  T+   LT+L+    +I D G A  +N   L+ L +  
Sbjct: 1149 ELP-LTFVNLGATPVQDEWLSDFTNAESLTYLNFASTKIGDKGLAAFQNCNALQQLSLQD 1207

Query: 309  GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
              +TD G+ +  D   L +L L QN  + D  L        L  + +S +R+T+AG+  L
Sbjct: 1208 TNITDEGLAYFYDCRDLEILQL-QNTKVRDFGLLRFKSCQKLKQVEISKTRVTAAGVDEL 1266

Query: 369  KPLKNLRSLTLESCKVTANDI 389
            K        +L  C V  +D+
Sbjct: 1267 KK-------SLPYCTVVWDDV 1280



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 3/214 (1%)

Query: 11   LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCN 69
            LT ++F      T  G+  FA   ++V L +     + G GL   K    L+ LN  +  
Sbjct: 1055 LTHVNFNLCKKATDDGLAVFANCKDIVSLTMRFTPNVTGRGLAYFKNCKDLKELNCNYSP 1114

Query: 70   CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
             ++ + +  L+   NL+ + +   K T   +  +  L  LT +NL   PV    L   + 
Sbjct: 1115 YVS-AGLPLLANCKNLEKISLMGVKFTREELRPIAEL-PLTFVNLGATPVQDEWLSDFTN 1172

Query: 130  LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
              SL YLN    ++ D G   F    +L+ L+L    ITDE L +     +LE L L + 
Sbjct: 1173 AESLTYLNFASTKIGDKGLAAFQNCNALQQLSLQDTNITDEGLAYFYDCRDLEILQLQNT 1232

Query: 190  GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
             + D GL+       LK +E+S T+V ++G+  L
Sbjct: 1233 KVRDFGLLRFKSCQKLKQVEISKTRVTAAGVDEL 1266



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 96/228 (42%), Gaps = 2/228 (0%)

Query: 45   TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYL 103
            T IH          +L  +N   C   TD  +   +   ++ SL +  +  VT  G+AY 
Sbjct: 1040 TDIHSATELPPAPFRLTHVNFNLCKKATDDGLAVFANCKDIVSLTMRFTPNVTGRGLAYF 1099

Query: 104  KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163
            K  + L  LN    P  +A L  L+   +L  ++L   + + +     +++  L  +NLG
Sbjct: 1100 KNCKDLKELNCNYSPYVSAGLPLLANCKNLEKISLMGVKFTREELRPIAEL-PLTFVNLG 1158

Query: 164  FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
               + DE L       +L  LN  S  IGD+GL        L+ L L DT +   GL + 
Sbjct: 1159 ATPVQDEWLSDFTNAESLTYLNFASTKIGDKGLAAFQNCNALQQLSLQDTNITDEGLAYF 1218

Query: 224  SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
                +LE + L  T + D  L +      LK + +   ++T  G+  L
Sbjct: 1219 YDCRDLEILQLQNTKVRDFGLLRFKSCQKLKQVEISKTRVTAAGVDEL 1266



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 94/213 (44%), Gaps = 28/213 (13%)

Query: 157 LKVLNLGFN---EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 212
           +K+ ++ FN   E T+E         ++E+L L +   I  +GL +     NLK L L  
Sbjct: 780 VKLKSVFFNQAIECTNEEFAVFADCQDIEALTLWAVPTISADGLKHFRRCRNLKVLALPH 839

Query: 213 TQVGSSGLRHLS---GLTNL--------------------ESINLSFTGISDGSLRKLAG 249
                SGL HLS    +TNL                    + + LS+T + D  L  L  
Sbjct: 840 CDNIGSGLSHLSECDKVTNLMLWATPITREDFLAFADCKLQGVLLSYTPVKDEWLTHLTH 899

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
             +   L     QI D GLAA  +   + +L L   +ITD G AY  + + L+S+ +   
Sbjct: 900 PEAFTDLGFSFTQIGDEGLAAFQNSKKIVNLHLEHTKITDVGLAYFHDCRELKSIRLRQT 959

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
            +TDAGV   K  S L  L+L+   N+T   +E
Sbjct: 960 SVTDAGVLPFKHCSKLEELSLATT-NVTAAAVE 991



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 96/421 (22%), Positives = 162/421 (38%), Gaps = 84/421 (19%)

Query: 22   ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
            I+A G+K F    NL  L L  C  I  GL +L    K+ +L + W   IT  D    + 
Sbjct: 818  ISADGLKHFRRCRNLKVLALPHCDNIGSGLSHLSECDKVTNLML-WATPITREDFLAFAD 876

Query: 82   LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
               L+ + +S + V D  + +L   +  T                   LG  F       
Sbjct: 877  -CKLQGVLLSYTPVKDEWLTHLTHPEAFT------------------DLGFSF------T 911

Query: 142  QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            Q+ D+G   F     +  L+L   +ITD  L +      L+S+ L    + D G++    
Sbjct: 912  QIGDEGLAAFQNSKKIVNLHLEHTKITDVGLAYFHDCRELKSIRLRQTSVTDAGVLPFKH 971

Query: 202  LCNLKCLELSDTQVGSSGLRHL-SGLTNLE----------------SINLSFTGI-SDGS 243
               L+ L L+ T V ++ +  L + L N +                S NL+   + S G 
Sbjct: 972  CSKLEELSLATTNVTAAAVEELRAALPNCKITWDGDAKTESPEEKNSDNLAAKYVLSIGG 1031

Query: 244  LRKLAGLSS--------------LKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARI 287
            + +L G  +              L  +N +  ++ TD GLA   +   +  L + F   +
Sbjct: 1032 IVRLNGGGTDIHSATELPPAPFRLTHVNFNLCKKATDDGLAVFANCKDIVSLTMRFTPNV 1091

Query: 288  TDSGAAYLRNFKNLRSLEICGGGLTDAGV------KHIKDLS-----------------S 324
            T  G AY +N K+L+ L         AG+      K+++ +S                  
Sbjct: 1092 TGRGLAYFKNCKDLKELNCNYSPYVSAGLPLLANCKNLEKISLMGVKFTREELRPIAELP 1151

Query: 325  LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
            LT +NL     + D+ L   +    L  LN ++++I   GL   +    L+ L+L+   +
Sbjct: 1152 LTFVNLGAT-PVQDEWLSDFTNAESLTYLNFASTKIGDKGLAAFQNCNALQQLSLQDTNI 1210

Query: 385  T 385
            T
Sbjct: 1211 T 1211


>gi|406831323|ref|ZP_11090917.1| hypothetical protein SpalD1_06790 [Schlesneria paludicola DSM
           18645]
          Length = 539

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 129/266 (48%), Gaps = 22/266 (8%)

Query: 143 LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLD-----SCGIGDEGL 196
           L+D    KFS + +L+ +   G  + T E L HL  LTNLE L+       +  +GD  L
Sbjct: 173 LNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGDATL 232

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKS 255
            +++ + +L+ L LS+  V   GL+ L  L NL  +++   G ++D +L  +A L  LK 
Sbjct: 233 RSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHLKV 292

Query: 256 LNLDAR--------QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           L L             +++    L +LT L HLDL G  ++      L NF  L+SL I 
Sbjct: 293 LTLTTHVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTD----LLNFPRLKSLRIN 348

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
                D   K I     LT L++S  C+ +TD  LE +  L  L  L++    I+   + 
Sbjct: 349 RNQFDDDLAKAIAKCRELTHLDVS--CSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIA 406

Query: 367 HLKPLKNLRSLTLESCKVTANDIKRL 392
           HLK   NL S+TL + ++T   ++ L
Sbjct: 407 HLKLFPNLASVTLHTAELTDKSLEYL 432



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 118/250 (47%), Gaps = 36/250 (14%)

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGIS----- 240
           D   + D+ L   + L  L+ ++     Q    GL HLS LTNLE ++ SF+  S     
Sbjct: 169 DYGVLNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELG 228

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFK 299
           D +LR ++ + SL+ LNL    +TD GL +L  L  LTHL ++   R+TD+  + +   K
Sbjct: 229 DATLRSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLK 288

Query: 300 NLRSLEICGGGLTDAGVKHIKD--------LSSLTLLNLSQNCNLTD-------KTLEL- 343
           +L+ L +     T  G  H  +        L+ L  L+LS +   TD       K+L + 
Sbjct: 289 HLKVLTLTTHVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTDLLNFPRLKSLRIN 348

Query: 344 -----------ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
                      I+    L  L+VS S +T   L HL+PL +L  L + + +++ N I  L
Sbjct: 349 RNQFDDDLAKAIAKCRELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHL 408

Query: 393 QSRDLPNLVS 402
           +    PNL S
Sbjct: 409 KL--FPNLAS 416



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 146/327 (44%), Gaps = 44/327 (13%)

Query: 95  VTDSGIAYLKGLQKLTLL------NLEGCP-VTAACLDSLSALGSLFYLNLNRC-----Q 142
           ++D G+   K L K ++L        EG P  T   L  LS L +L  L+ +       +
Sbjct: 167 LSDYGVLNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANE 226

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTG 201
           L D      S+I SL+ LNL    +TDE L  L+ L NL  L++   G + D  L  +  
Sbjct: 227 LGDATLRSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAK 286

Query: 202 LCNLKCLELSDTQVGSS-GLRHLS--------GLTNLESINLSFTGIS------------ 240
           L +LK L L+ T VG+  G  H S         LT LE ++LS   +S            
Sbjct: 287 LKHLKVLTLT-THVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTDLLNFPRLKSL 345

Query: 241 --------DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
                   D   + +A    L  L++   ++TDT L  L  L  LT L +    I+D+  
Sbjct: 346 RINRNQFDDDLAKAIAKCRELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAI 405

Query: 293 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLV 351
           A+L+ F NL S+ +    LTD  ++++   +SLT L+L+   N  +   LE ++ L  L 
Sbjct: 406 AHLKLFPNLASVTLHTAELTDKSLEYLSQTASLTKLDLNWATNHFSRHGLEQLANLPNLE 465

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLT 378
           +L +        GL+ ++  K    LT
Sbjct: 466 TLELRIIPFQGGGLKLIRDAKEPEILT 492



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 15/229 (6%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT-----RIH---GGLVNL 54
           ++L  L NLT LS  +   +T   +   A L +L  L L         R+H        L
Sbjct: 257 KSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHLKVLTLTTHVGTPLGRMHFSESATNQL 316

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
             L +LE L++   +  TD     L     LKSL+I+ ++  D     +   ++LT L++
Sbjct: 317 IALTELEHLDLSGHDVSTD-----LLNFPRLKSLRINRNQFDDDLAKAIAKCRELTHLDV 371

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
               +T   L+ L  L SL  L++   ++SD+         +L  + L   E+TD+ L +
Sbjct: 372 SCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHLKLFPNLASVTLHTAELTDKSLEY 431

Query: 175 LKGLTNLESLNLDSC--GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
           L    +L  L+L+         GL  L  L NL+ LEL        GL+
Sbjct: 432 LSQTASLTKLDLNWATNHFSRHGLEQLANLPNLETLELRIIPFQGGGLK 480


>gi|18378037|emb|CAD21749.1| hypothetical leucine-rich repeat protein 1, LRRP1 [Trypanosoma
           brucei]
          Length = 1394

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 182/414 (43%), Gaps = 56/414 (13%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           ++A A ++ L KL L  CT I  G+  L  L +L+ L++   N   +S ++ L     + 
Sbjct: 477 VEALANILTLEKLSLHGCTDIDAGIGCLGNLPQLKMLDLSGTNTDNES-LRSLCLSQTMV 535

Query: 87  SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 145
           SL +S C K+T+  ++++  L+ L  LNL  C    A  +++  L  L    L    ++D
Sbjct: 536 SLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILPNTHITD 593

Query: 146 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTG 201
                FS   +L  L+L F N++ D  +  L  +T LE LNLD+C    +GL     L  
Sbjct: 594 RDISHFSNCKNLVTLDLSFCNKLLD--VTTLSNITTLEDLNLDNCSNIRKGLSVLGELPR 651

Query: 202 LC--NLKCLELSDTQVGSSG------------------LRHLSGLTNLESINLSFTGISD 241
           LC  N+K + L D+ +GS G                  ++ LS L  LE +NL +     
Sbjct: 652 LCVLNIKGVHLKDSVIGSLGNGNSFVKLSLENCKGFGDVKPLSNLVTLEELNLHYCDKVT 711

Query: 242 GSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTGL 277
             +  L  L  L+ L+L   Q+ +                        T ++A+ SLT L
Sbjct: 712 SGMGTLGRLLQLRVLDLGRTQVDNNSLENICTSSSPLVSLNLSHCKKITSISAIASLTAL 771

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
             L++       SG         LR   +    + D  V+H+ +  SL  LNL+   ++T
Sbjct: 772 EELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENVRHVSECKSLNTLNLAFCKDIT 831

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           D T   +S +T L  LN+        G+  L  L   R L+++ C++  +D ++
Sbjct: 832 DVT--ALSKITMLEELNLDCCPNIRKGIETLGTLPKARILSMKECQIGDSDAQQ 883



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 175/386 (45%), Gaps = 38/386 (9%)

Query: 27   MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
            +K  + L+ L +L+L  C ++  G+  L  L++L  L++       +S     +  + L 
Sbjct: 690  VKPLSNLVTLEELNLHYCDKVTSGMGTLGRLLQLRVLDLGRTQVDNNSLENICTSSSPLV 749

Query: 87   SLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
            SL +S C K+T  S IA L  L++L   N++ C    +  +    L  L    L+  +++
Sbjct: 750  SLNLSHCKKITSISAIASLTALEEL---NIDNCCNVTSGWNVFGTLHQLRVATLSNTRIN 806

Query: 145  DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
            D+     S+  SL  LNL F  +ITD  +  L  +T LE LNLD C    +G+  L  L 
Sbjct: 807  DENVRHVSECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGTLP 864

Query: 204  NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG--SLRKLAGLSSLKSLNLDAR 261
              + L + + Q+G S  +  S L N +S+       S G  S++ L+ +++L+ L LD  
Sbjct: 865  KARILSMKECQIGDSDAQQCSILGNSKSLVKLNLERSRGRISVKALSNIATLEELVLDHA 924

Query: 262  QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
            Q     +  + S + L HL +   + TD                   G +T    K+I +
Sbjct: 925  Q----EVCCIPSFSCLPHLRVLNVKYTD-----------------INGDVT----KNISE 959

Query: 322  LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
              SL LLNLS    +TD  + ++S L+ L  LNV        G   L  L  LR   L  
Sbjct: 960  SKSLRLLNLSHCKWVTD--ISVLSSLSTLEKLNVKCCNGIRKGWESLGKLPLLRVAILSD 1017

Query: 382  CKVTANDIKRLQS-RDLPNLVSFRPE 406
              +TA DI  L S + L  L  FR E
Sbjct: 1018 TNITAKDIACLSSCKTLVKLKFFRCE 1043



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 178/392 (45%), Gaps = 35/392 (8%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           ++  + L NL+ LDL         +  +   +KL  L++  CN ITD+   P+S L  L+
Sbjct: 217 IRGISRLTNLMCLDLNSTNIDDSCVRRICACVKLSKLSVSECNNITDA--TPISQLEALE 274

Query: 87  SLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLS 144
            L + SC  +T  GI  L  L +L +L+L G PV   CL  L   GSL  LN++ C QL 
Sbjct: 275 ELNLNSCYHIT-KGIGTLGMLLRLRILDLSGVPVEDNCLKGLCDCGSLERLNISYCIQLK 333

Query: 145 D---------------DGCEKFSK-------IGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           D               +GC + ++       +  L+VL++    +++  L  +     L 
Sbjct: 334 DINPLSNATATEELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLV 393

Query: 183 SLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            ++LD+C G GD  L  L+ +  L+ L +       SG+  L  L  L  +N+    IS 
Sbjct: 394 KVSLDNCAGFGDMTL--LSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISS 451

Query: 242 GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
                +    SL  LN+++  IT  + + AL ++  L  L L G    D+G   L N   
Sbjct: 452 LDFTGIGASKSLLQLNMES--ITGLSNVEALANILTLEKLSLHGCTDIDAGIGCLGNLPQ 509

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L+ L++ G    +  ++ +    ++  LNLS    +T+  +  IS L  L  LN+SN   
Sbjct: 510 LKMLDLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTN--VSHISSLEALNELNLSNCFG 567

Query: 361 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            +AG   ++ L+ L    L +  +T  DI   
Sbjct: 568 INAGWEAIEKLQQLHVAILPNTHITDRDISHF 599



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 185/403 (45%), Gaps = 31/403 (7%)

Query: 1    MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
            +T+N+S   +L  L+      +T   +   + L  L KL+++ C  I  G  +L G + L
Sbjct: 953  VTKNISESKSLRLLNLSHCKWVT--DISVLSSLSTLEKLNVKCCNGIRKGWESL-GKLPL 1009

Query: 61   ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
              + I     IT  D+  LS    L  L+   C K++D  + Y   +Q L  L +  C  
Sbjct: 1010 LRVAILSDTNITAKDIACLSSCKTLVKLKFFRCEKLSDVTVVY--KIQSLEELMVRSCSD 1067

Query: 120  TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 178
                L++L  L  L +L+L   + SD   E      SL  LN+    E+T+     L  +
Sbjct: 1068 GLKGLNALGTLPRLRFLHLRNLKGSDISVESIGTSKSLVRLNIEMREELTNA--TPLSNI 1125

Query: 179  TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            T+LE L+L  CG   EG+  L  L  LK L+L  +++    L  +    ++ S+NL+ + 
Sbjct: 1126 TSLEELSLRDCGDNLEGVGTLGKLPRLKSLDLGLSRISDDTLDDICLSRSITSLNLASSW 1185

Query: 239  -ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLR 296
             ++D S   ++ L++L+ +NL      ++G  AL+ L  L  ++L  A +T      Y+ 
Sbjct: 1186 KLTDIS--HISNLTALEEMNLSGCYPINSGWKALSELPRLRVVNLESASVTTRYDGYYIS 1243

Query: 297  NFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS--- 352
              K L +L I    +TDA  + +IK L  L +           K+ EL  G + L +   
Sbjct: 1244 RCKYLVTLNIQLSDMTDASYIANIKTLEELRI----------GKSKELTQGFSALFTLPR 1293

Query: 353  ---LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
               L++  SRIT   LR ++P   +  L L  C+   NDI  L
Sbjct: 1294 LRILDLFMSRITDEDLREIQPPHTIEELNLSYCE-ELNDITPL 1335



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 170/406 (41%), Gaps = 41/406 (10%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           N  IT + +  F+   NLV LDL  C ++   +  L  +  LE LN+  C+ I    +  
Sbjct: 588 NTHITDRDISHFSNCKNLVTLDLSFCNKLL-DVTTLSNITTLEDLNLDNCSNIRKG-LSV 645

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L  L  L  L I    + DS I  L        L+LE C      +  LS L +L  LNL
Sbjct: 646 LGELPRLCVLNIKGVHLKDSVIGSLGNGNSFVKLSLENCKGFGD-VKPLSNLVTLEELNL 704

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH------------------------ 174
           + C     G     ++  L+VL+LG  ++ +  L +                        
Sbjct: 705 HYCDKVTSGMGTLGRLLQLRVLDLGRTQVDNNSLENICTSSSPLVSLNLSHCKKITSISA 764

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +  LT LE LN+D+C     G      L  L+   LS+T++    +RH+S   +L ++NL
Sbjct: 765 IASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENVRHVSECKSLNTLNL 824

Query: 235 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           +F   I+D  +  L+ ++ L+ LNLD       G+  L +L     L +   +I DS A 
Sbjct: 825 AFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGTLPKARILSMKECQIGDSDAQ 882

Query: 294 YLRNFKNLRS-----LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
                 N +S     LE   G ++   + +I  L  L L +  + C +        S L 
Sbjct: 883 QCSILGNSKSLVKLNLERSRGRISVKALSNIATLEELVLDHAQEVCCIPS-----FSCLP 937

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
            L  LNV  + I     +++   K+LR L L  CK    DI  L S
Sbjct: 938 HLRVLNVKYTDINGDVTKNISESKSLRLLNLSHCKWVT-DISVLSS 982


>gi|147821391|emb|CAN67937.1| hypothetical protein VITISV_014237 [Vitis vinifera]
          Length = 216

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 58/79 (73%), Gaps = 17/79 (21%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +N+SGLSNLTSLSF+++N +TA+GM+AF+ L+NL KLDLERC+RIHGGL++LK       
Sbjct: 146 KNISGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERCSRIHGGLIHLK------- 198

Query: 63  LNIKWCNCITDSDMKPLSG 81
                     DSD+K LSG
Sbjct: 199 ----------DSDLKALSG 207



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 1/102 (0%)

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
           +L S+++ G  +TD G+  +KD S++ +L+ +    +++  L+ ISGL+ L SL+   S 
Sbjct: 104 SLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSN 163

Query: 360 -ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
            +T+ G+R    L NL  L LE C      +  L+  DL  L
Sbjct: 164 TVTAEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKDSDLKAL 205



 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 75/136 (55%), Gaps = 8/136 (5%)

Query: 252 SLKSLNL-DARQITDTGLAALTSLTGLT--HLDLFGARITDSGAAYLRNFKNLR--SLEI 306
           +++ +NL +  ++ D+ +  ++S  GL+   +DL G+ +TD G + L++  N++  S   
Sbjct: 78  AIQDVNLGEYPEVNDSWMDIISS-QGLSLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNY 136

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
           C   +++ G+K+I  LS+LT L+  ++  +T + +   S L  L  L++        GL 
Sbjct: 137 C-DQISEPGLKNISGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERCSRIHGGLI 195

Query: 367 HLKPLKNLRSLTLESC 382
           HLK   +L++L+   C
Sbjct: 196 HLKD-SDLKALSGNVC 210



 Score = 39.3 bits (90), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           + I++QG+       +L+ +DL   +    GL  LK    ++ L+  +C+ I++  +K +
Sbjct: 96  DIISSQGL-------SLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNI 148

Query: 80  SGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC 117
           SGL+NL SL    S  VT  G+     L  L  L+LE C
Sbjct: 149 SGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERC 187


>gi|290989200|ref|XP_002677229.1| predicted protein [Naegleria gruberi]
 gi|284090835|gb|EFC44485.1| predicted protein [Naegleria gruberi]
          Length = 308

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 118/259 (45%), Gaps = 24/259 (9%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           D K    +  L +L IS + +      Y+  L KL  LN+ G  +T      LS L  L 
Sbjct: 57  DCKIFEWMKQLTNLSISYNNMNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLN 116

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
            L+++ C++  +G +  S++  L  LN+G N I                        G E
Sbjct: 117 TLHIDNCEIGVEGAKYLSEMKHLTNLNIGSNRI------------------------GVE 152

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           G+ ++ GL  L  L++S+ ++G  G ++L  +  L ++++S   +    +  ++ +  L 
Sbjct: 153 GVKHIIGLSKLTFLDISNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLT 212

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
           SL++    I   G   ++ +T LT L++    I   G  ++ N K L+ L I G  + + 
Sbjct: 213 SLSIAVNLIGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLIISGNNIGNK 272

Query: 315 GVKHIKDLSSLTLLNLSQN 333
           G + I DL  LT LN+  N
Sbjct: 273 GCELILDLEQLTFLNIENN 291



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 3/265 (1%)

Query: 106 LQKLTLLNLEGCPVTAACLDS--LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163
           LQ +  L +E     +   D      +  L  L+++   ++ +  +   ++  L  LN+ 
Sbjct: 38  LQNIATLKVEKRRSDSVVFDCKIFEWMKQLTNLSISYNNMNVENTKYIGQLDKLINLNIN 97

Query: 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
            N IT E   +L  L  L +L++D+C IG EG   L+ + +L  L +   ++G  G++H+
Sbjct: 98  GNAITHEGAKYLSELEQLNTLHIDNCEIGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHI 157

Query: 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
            GL+ L  +++S   I +   + L  +  L +L++    +   G+  ++ +  LT L + 
Sbjct: 158 IGLSKLTFLDISNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIA 217

Query: 284 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
              I   GA ++     L  L +    +   GVKHI ++  L  L +S N N+ +K  EL
Sbjct: 218 VNLIGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLIISGN-NIGNKGCEL 276

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHL 368
           I  L  L  LN+ N+ I   G+ ++
Sbjct: 277 ILDLEQLTFLNIENNNIDVEGIAYI 301



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 112/232 (48%), Gaps = 25/232 (10%)

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
           C+ F  +  L  L++ +N +  E   ++  L  L +LN++   I  EG   L+ L  L  
Sbjct: 58  CKIFEWMKQLTNLSISYNNMNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNT 117

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267
           L + + ++G  G ++LS + +L                         +LN+ + +I   G
Sbjct: 118 LHIDNCEIGVEGAKYLSEMKHL------------------------TNLNIGSNRIGVEG 153

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
           +  +  L+ LT LD+   +I + GA YLR  + L +L++    L   G+++I ++  LT 
Sbjct: 154 VKHIIGLSKLTFLDISNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLTS 213

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           L+++ N  +  +  + IS +T L  LN++   I   G++H+  +K L+ L +
Sbjct: 214 LSIAVNL-IGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLII 264



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 113/269 (42%), Gaps = 26/269 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
              +  LT+LS   NN +  +  K    L  L+ L++      H G   L  L +L +L+
Sbjct: 61  FEWMKQLTNLSISYNN-MNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNTLH 119

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I  C  I     K LS + +L +L I  +++   G+ ++ GL KLT L++    +     
Sbjct: 120 IDNCE-IGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEEGA 178

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             L  +  L  L+++   L   G E  S++  L  L++  N I  E   H+  +T L  L
Sbjct: 179 KYLREMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIAVNLIGVEGAKHISEMTQLTKL 238

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           N++ C IG E                        G++H+  +  L+ + +S   I +   
Sbjct: 239 NMNCCNIGVE------------------------GVKHIINMKQLKHLIISGNNIGNKGC 274

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTS 273
             +  L  L  LN++   I   G+A + S
Sbjct: 275 ELILDLEQLTFLNIENNNIDVEGIAYIAS 303



 Score = 45.4 bits (106), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 6/171 (3%)

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL---AALTSLTGLTHLDLFGARITDS 290
           LS T   D S  +   L ++ +L ++ R+ +D+ +        +  LT+L +    +   
Sbjct: 22  LSLTRNHDHSKMQGQFLQNIATLKVEKRR-SDSVVFDCKIFEWMKQLTNLSISYNNMNVE 80

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
              Y+     L +L I G  +T  G K++ +L  L  L++  NC +  +  + +S +  L
Sbjct: 81  NTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNTLHID-NCEIGVEGAKYLSEMKHL 139

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 400
            +LN+ ++RI   G++H+  L  L  L + + K+     K L+  R L NL
Sbjct: 140 TNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEEGAKYLREMRQLNNL 190


>gi|72385483|ref|XP_846409.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
 gi|9366582|emb|CAB95344.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
            brucei strain 927/4 GUTat10.1]
          Length = 1449

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 184/415 (44%), Gaps = 63/415 (15%)

Query: 27   MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
            + A + +  L +L+L+ C  I  G+  L  L K   L++K C  + DSD +  S L N K
Sbjct: 888  VTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECY-MGDSDAQQCSILGNSK 946

Query: 87   SL-----QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
            SL     + S   ++   ++ +  L++L L +         C+ S S L  L  LNL   
Sbjct: 947  SLVKLNLERSMGFISVKALSNIATLEELVLDHAR----EVCCIPSFSCLPRLRVLNLKYT 1002

Query: 142  QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GI--GDEGL-- 196
             ++ D  +  S+  SL++LNL   +   +  V L  L+ LE LN+ SC GI  G E L  
Sbjct: 1003 DINGDVTKNISESKSLRLLNLSHCKWVTDISV-LSSLSTLEELNVSSCYGIKKGWESLGK 1061

Query: 197  -----------VNLTG-----------LCNLK---CLELSDTQV---------------- 215
                        N+T            L  L+   C ELSD  V                
Sbjct: 1062 LPLLRVAILSDTNITAKDIACLSSCKTLVKLQFSWCEELSDVTVVYEIQSLEELIVKKYS 1121

Query: 216  -GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTS 273
             G  GL  L  L  L  ++L     SD S+  +    SL  LN++ R ++TD  +  L++
Sbjct: 1122 DGLKGLNALGTLPRLRFLHLRNVRGSDISVESIGTSKSLVRLNIEMRGELTD--ITPLSN 1179

Query: 274  LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            +T L  L L+  R T  GA  L     LRSL++    ++D+ + +I     +T LNL+ +
Sbjct: 1180 ITSLEELSLWECRDTLEGAWTLERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLTSS 1239

Query: 334  CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
              LTD  +  IS LT L  LN+      ++G   L  L  LR L LES  VT  D
Sbjct: 1240 WKLTD--ISGISKLTALEELNLRGCHRITSGWEALSELPRLRVLNLESTSVTTRD 1292



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 176/429 (41%), Gaps = 81/429 (18%)

Query: 36  LVKLDLERCTRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 92
           L++L LE  T    GL++++ L   + LE L++  C  I D+ +  L  L  LK L +S 
Sbjct: 518 LLQLTLESIT----GLIDVEALANILTLEKLSLHGCTGI-DAGIGCLGNLPQLKMLDLSG 572

Query: 93  SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 152
           +   +  +  L   Q +  LNL  C      +  +S+L +L  LNLN C   + G E   
Sbjct: 573 TNTDNESLRSLCLSQTMVSLNLSHC-WKMTNVSHISSLEALNELNLNNCFGINAGWEAIE 631

Query: 153 KIGSLKVLNLGFNEITDECLVH-----------------------LKGLTNLESLNLDSC 189
           K+  L V  L    ITD  + H                       L  +T LE LNLDSC
Sbjct: 632 KLQQLHVAILSNTHITDRDISHFSKCKNLVTLDLSFCNKLLDVTTLSNITTLEELNLDSC 691

Query: 190 GIGDEGLV---NLTGLC--NLKCLELSDTQVGSSG---------LRH---------LSGL 226
               +GL     L  LC  N+K +EL D+ +GS G         L H         LS L
Sbjct: 692 SNIRKGLSVLGELPRLCVLNIKGVELEDSVIGSLGNGNSFVRLSLEHCKGFGDVTPLSNL 751

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD--------------------- 265
             LE +NL +       +  L  L  L+ L+L   Q+ +                     
Sbjct: 752 VTLEELNLHYCDKVTSGMGTLGRLLQLRVLDLGRTQVDNNSLENICTSSIPLVLLNLSHC 811

Query: 266 ---TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
              T ++A+ SLT L  L++       SG         LR   +    + D  V+++ + 
Sbjct: 812 KKITSISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENVRYVSEC 871

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
            SL  LNL+   ++TD T   +S +T L  LN+        G+  L  L   R L+++ C
Sbjct: 872 KSLNTLNLAFCKDITDVT--ALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKEC 929

Query: 383 KVTANDIKR 391
            +  +D ++
Sbjct: 930 YMGDSDAQQ 938



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 171/391 (43%), Gaps = 68/391 (17%)

Query: 36   LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI----- 90
             V+L LE C +  G +  L  L+ LE LN+ +C+ +T S M  L  L  L+ L +     
Sbjct: 731  FVRLSLEHC-KGFGDVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVLDLGRTQV 788

Query: 91   ---------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
                                  C K+T  S IA L  L++L   N++ C    +  +   
Sbjct: 789  DNNSLENICTSSIPLVLLNLSHCKKITSISAIASLTALEEL---NIDNCCNVTSGWNVFG 845

Query: 129  ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLD 187
             L  L    L+  +++D+     S+  SL  LNL F  +ITD  +  L  +T LE LNLD
Sbjct: 846  TLHQLRVATLSNTRINDENVRYVSECKSLNTLNLAFCKDITD--VTALSKITMLEELNLD 903

Query: 188  SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES---INLSFTGISDGSL 244
             C    +G+  L  L   + L + +  +G S  +  S L N +S   +NL  + +   S+
Sbjct: 904  CCHNIRKGIETLGKLPKARILSMKECYMGDSDAQQCSILGNSKSLVKLNLERS-MGFISV 962

Query: 245  RKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
            + L+ +++L+ L LD AR++       + S + L  L +   + TD              
Sbjct: 963  KALSNIATLEELVLDHAREV-----CCIPSFSCLPRLRVLNLKYTD-------------- 1003

Query: 304  LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
                 G +T    K+I +  SL LLNLS    +TD  + ++S L+ L  LNVS+      
Sbjct: 1004 ---INGDVT----KNISESKSLRLLNLSHCKWVTD--ISVLSSLSTLEELNVSSCYGIKK 1054

Query: 364  GLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
            G   L  L  LR   L    +TA DI  L S
Sbjct: 1055 GWESLGKLPLLRVAILSDTNITAKDIACLSS 1085



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 179/399 (44%), Gaps = 23/399 (5%)

Query: 1    MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
            +T+N+S   +L  L+      +T   +   + L  L +L++  C  I  G  +L G + L
Sbjct: 1008 VTKNISESKSLRLLNLSHCKWVT--DISVLSSLSTLEELNVSSCYGIKKGWESL-GKLPL 1064

Query: 61   ESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
              + I     IT  D+  LS    L  LQ S C +++D  + Y   +Q L  L ++    
Sbjct: 1065 LRVAILSDTNITAKDIACLSSCKTLVKLQFSWCEELSDVTVVY--EIQSLEELIVKKYSD 1122

Query: 120  TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGL 178
                L++L  L  L +L+L   + SD   E      SL  LN+    E+TD  +  L  +
Sbjct: 1123 GLKGLNALGTLPRLRFLHLRNVRGSDISVESIGTSKSLVRLNIEMRGELTD--ITPLSNI 1180

Query: 179  TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            T+LE L+L  C    EG   L  L  L+ L+L  + +  S L ++     + S+NL+   
Sbjct: 1181 TSLEELSLWECRDTLEGAWTLERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLT--- 1237

Query: 239  ISDGSLRKLAGLS---SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAY 294
             S   L  ++G+S   +L+ LNL       +G  AL+ L  L  L+L    +T   G  Y
Sbjct: 1238 -SSWKLTDISGISKLTALEELNLRGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYY 1296

Query: 295  LRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            +   K+L +L I    +TDA  + +IK L  L +      C+   +    +  L  L  L
Sbjct: 1297 ISRCKSLVTLNIQLSDMTDASCLANIKTLEELHI----GECDELTQGFSALFTLPRLRIL 1352

Query: 354  NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            N+  S IT   LR ++P   +  L L  CK   NDI  L
Sbjct: 1353 NLMGSLITDEDLREIQPPHTIEELNLSYCK-NLNDITPL 1390



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 176/394 (44%), Gaps = 39/394 (9%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           ++  + L NL  L+L         +  +   +KL  L++  CN ITD+   P+S L  L+
Sbjct: 272 IRGISRLTNLKCLELNSTDIDDSCIGEISACVKLSKLSVSECNNITDA--TPISQLAALE 329

Query: 87  SLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLS 144
            L + SC  +T  GI  L  L +L +L+L G PV   CL  L   GSL  LNL+ C QL+
Sbjct: 330 ELNVNSCYHIT-KGIGTLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSLERLNLSYCIQLT 388

Query: 145 D---------------DGCEKFSK-------IGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           D               +GC + ++       +  L+VL++   ++ D  +  L    +  
Sbjct: 389 DINPLSSATAIEELNLNGCRRITRGIGVVWALPKLRVLHMKDVQLEDSVIGSLGNGNSFV 448

Query: 183 SLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            L+L++C G GD  L  L+ +  L+ L +       SG+  L  L  L  +N+    IS 
Sbjct: 449 RLSLENCAGFGDMTL--LSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNVKEVHISS 506

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGL---AALTSLTGLTHLDLFGARITDSGAAYLRNF 298
                +    SL  L L++     TGL    AL ++  L  L L G    D+G   L N 
Sbjct: 507 LDFTGIGASKSLLQLTLESI----TGLIDVEALANILTLEKLSLHGCTGIDAGIGCLGNL 562

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
             L+ L++ G    +  ++ +    ++  LNLS    +T+  +  IS L  L  LN++N 
Sbjct: 563 PQLKMLDLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTN--VSHISSLEALNELNLNNC 620

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
              +AG   ++ L+ L    L +  +T  DI   
Sbjct: 621 FGINAGWEAIEKLQQLHVAILSNTHITDRDISHF 654



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 173/406 (42%), Gaps = 41/406 (10%)

Query: 19   NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
            N  IT + +  F+   NLV LDL  C ++   +  L  +  LE LN+  C+ I    +  
Sbjct: 643  NTHITDRDISHFSKCKNLVTLDLSFCNKLL-DVTTLSNITTLEELNLDSCSNIRKG-LSV 700

Query: 79   LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
            L  L  L  L I   ++ DS I  L        L+LE C      +  LS L +L  LNL
Sbjct: 701  LGELPRLCVLNIKGVELEDSVIGSLGNGNSFVRLSLEHCKGFGD-VTPLSNLVTLEELNL 759

Query: 139  NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH------------------------ 174
            + C     G     ++  L+VL+LG  ++ +  L +                        
Sbjct: 760  HYCDKVTSGMGTLGRLLQLRVLDLGRTQVDNNSLENICTSSIPLVLLNLSHCKKITSISA 819

Query: 175  LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
            +  LT LE LN+D+C     G      L  L+   LS+T++    +R++S   +L ++NL
Sbjct: 820  IASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENVRYVSECKSLNTLNL 879

Query: 235  SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA- 292
            +F   I+D  +  L+ ++ L+ LNLD       G+  L  L     L +    + DS A 
Sbjct: 880  AFCKDITD--VTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECYMGDSDAQ 937

Query: 293  --AYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
              + L N K+L   +LE   G ++   + +I  L  L L +  + C +        S L 
Sbjct: 938  QCSILGNSKSLVKLNLERSMGFISVKALSNIATLEELVLDHAREVCCIPS-----FSCLP 992

Query: 349  GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
             L  LN+  + I     +++   K+LR L L  CK    DI  L S
Sbjct: 993  RLRVLNLKYTDINGDVTKNISESKSLRLLNLSHCKWVT-DISVLSS 1037



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 139/325 (42%), Gaps = 34/325 (10%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           LE LN+ +C  I  +D+ PLS  T ++ L ++ C ++T  GI  +  L KL +L+++   
Sbjct: 376 LERLNLSYC--IQLTDINPLSSATAIEELNLNGCRRIT-RGIGVVWALPKLRVLHMKDVQ 432

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +  + + SL    S   L+L  C                     GF ++T      L  +
Sbjct: 433 LEDSVIGSLGNGNSFVRLSLENCA--------------------GFGDMT-----LLSSI 467

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFT 237
             LE LN+  C     G+  L  L  L+ L + +  + S     +    +L  + L S T
Sbjct: 468 VTLEELNIQKCADIISGVGCLGTLPYLRVLNVKEVHISSLDFTGIGASKSLLQLTLESIT 527

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
           G+ D  +  LA + +L+ L+L      D G+  L +L  L  LDL G    +     L  
Sbjct: 528 GLID--VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCL 585

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
            + + SL +         V HI  L +L  LNL+ NC   +   E I  L  L    +SN
Sbjct: 586 SQTMVSLNL-SHCWKMTNVSHISSLEALNELNLN-NCFGINAGWEAIEKLQQLHVAILSN 643

Query: 358 SRITSAGLRHLKPLKNLRSLTLESC 382
           + IT   + H    KNL +L L  C
Sbjct: 644 THITDRDISHFSKCKNLVTLDLSFC 668


>gi|395743765|ref|XP_003777984.1| PREDICTED: F-box/LRR-repeat protein 14-like, partial [Pongo abelii]
          Length = 296

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 161/286 (56%), Gaps = 25/286 (8%)

Query: 127 LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLE 182
           +  +GSL  LNL+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+
Sbjct: 8   VQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLK 67

Query: 183 SLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLES 231
           SLNL SC  + D G+ +L G+          L+ L L D Q +    L+H+S GLT L  
Sbjct: 68  SLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRL 127

Query: 232 INLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGAR 286
           +NLSF G ISD  L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  +
Sbjct: 128 LNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDK 186

Query: 287 ITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELI 344
           + D   AY+ +    L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI
Sbjct: 187 VGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELI 246

Query: 345 S-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           +  L+ L  +++   +RIT  GL  +  L  L+ L L   ++T ++
Sbjct: 247 AEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 292



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 147/280 (52%), Gaps = 27/280 (9%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L +LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL
Sbjct: 14  LRALNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNL 71

Query: 115 EGCPVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLG 163
             C   +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL 
Sbjct: 72  RSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLS 131

Query: 164 F-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSG 219
           F   I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   
Sbjct: 132 FCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQS 191

Query: 220 LRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LT 275
           L +++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+
Sbjct: 192 LAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLS 251

Query: 276 GLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
            LT +DL+G  RIT  G   +     L+ L +    +TD+
Sbjct: 252 QLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 291



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 26/234 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 62  GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 117

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 118 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 177

Query: 111 LLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNE 166
            L++  C  V    L  ++  L  L  L+L  C +SDDG  +  + +  L+ LN+G    
Sbjct: 178 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 237

Query: 167 ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 238 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 291



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 25/205 (12%)

Query: 207 CLELSDTQVGSSGLRHLSGLTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQ 262
           C +++D+ +G    ++L GL  LE     N++ TG+    L    GL  LKSLNL + R 
Sbjct: 22  CKQITDSSLGRIA-QYLKGLEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRH 76

Query: 263 ITDTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGG 310
           ++D G+  L  +T        GL  L L    ++TD    ++ R    LR  +L  CGG 
Sbjct: 77  LSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG- 135

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL 368
           ++DAG+ H+  + SL  LNL    N++D   + L  G   L  L+VS   ++    L ++
Sbjct: 136 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 195

Query: 369 -KPLKNLRSLTLESCKVTANDIKRL 392
            + L  L+SL+L SC ++ + I R+
Sbjct: 196 AQGLDGLKSLSLCSCHISDDGINRM 220


>gi|410907724|ref|XP_003967341.1| PREDICTED: F-box/LRR-repeat protein 14-like [Takifugu rubripes]
          Length = 403

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 181/339 (53%), Gaps = 50/339 (14%)

Query: 79  LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           + G+ +++SL +  C  +TDSG+  A+++ +  L +LNL  C                  
Sbjct: 89  IQGMPHIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCK----------------- 131

Query: 136 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 191
                 Q++D    K ++ + +L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 132 ------QITDSSLGKIAEYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHV 185

Query: 192 GDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 240
            D G+ +L+G+         +L+ L L D Q +    L+H+S GL  L+ +NLSF G IS
Sbjct: 186 SDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGIS 245

Query: 241 DGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL- 295
           D  +  L+ ++ L SLNL +   I+DTG+   A+ SL  L+ LD+ F  +I D   AY+ 
Sbjct: 246 DVGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKIGDQSLAYIA 304

Query: 296 RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSL 353
           +    L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  +
Sbjct: 305 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGI 364

Query: 354 NVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           ++   ++IT  GL  +  L  L+ L L   ++T N+  R
Sbjct: 365 DLYGCTKITKRGLERITQLPCLKVLNLGLWQMTENERMR 403



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 151/303 (49%), Gaps = 50/303 (16%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLK-- 104
           ++G+  +ESLN+  C  +TDS +    +  + +L+ L +S C ++TDS +     YLK  
Sbjct: 89  IQGMPHIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCKQITDSSLGKIAEYLKNL 148

Query: 105 ---------------------GLQKLTLLNLEGC-PVTAACLDSLSALG--------SLF 134
                                GL +L  LNL  C  V+   +  LS +         SL 
Sbjct: 149 EVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLSLE 208

Query: 135 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 190
            L L  CQ L+D   +  SK +  LKVLNL F   I+D  ++HL  +T+L SLNL SC  
Sbjct: 209 KLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRSCDN 268

Query: 191 IGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RK 246
           I D G+++L  G   L  L++S   ++G   L +++ GL  L+S++L    ISD  + R 
Sbjct: 269 ISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRM 328

Query: 247 LAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRS 303
           +  +  LK+LN+    +ITD GL  +   LT LT +DL+G  +IT  G   +     L+ 
Sbjct: 329 VRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKV 388

Query: 304 LEI 306
           L +
Sbjct: 389 LNL 391



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 116/233 (49%), Gaps = 30/233 (12%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   +G+        ++L KL L+ C +    L +L    
Sbjct: 170 GLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQK----LTDLSLKH 225

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             KGL KL+ LN+ +C  I+D  M  LS +T+L SL + SC  ++D+GI +L  G  +L+
Sbjct: 226 VSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLS 285

Query: 111 LLNLEGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-F 164
            L++  C        SL+ +    Y    L+L  C +SDDG  +  + +  LK LN+G  
Sbjct: 286 GLDVSFCDKIGD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQC 343

Query: 165 NEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 215
             ITD+ L  +   LT L  ++L  C  I   GL  +T L  LK L L   Q+
Sbjct: 344 GRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQM 396



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 32/245 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ ++ESLNL  C      G+G   + ++  L  L    C +++D+ +G         
Sbjct: 89  IQGMPHIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCKQITDSSLGKIA----EY 144

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 275
           L NLE + L   + I++  L  +A GL  LKSLNL + R ++D G+  L+ +T       
Sbjct: 145 LKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGC 204

Query: 276 -GLTHLDLFG-ARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             L  L L    ++TD    ++    N   + +L  CGG ++D G+ H+  ++ L  LNL
Sbjct: 205 LSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGG-ISDVGMIHLSHMTHLCSLNL 263

Query: 331 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 387
               N++D   + L  G   L  L+VS   +I    L ++ + L  L+SL+L SC ++ +
Sbjct: 264 RSCDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 323

Query: 388 DIKRL 392
            I R+
Sbjct: 324 GINRM 328


>gi|414076287|ref|YP_006995605.1| hypothetical protein ANA_C11003 [Anabaena sp. 90]
 gi|413969703|gb|AFW93792.1| leucine-rich repeat-containing protein [Anabaena sp. 90]
          Length = 474

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 140/260 (53%), Gaps = 20/260 (7%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           SD+KPLS LT L SL +S +K++D  I  L  L KLT L L    ++   + SLS L  L
Sbjct: 98  SDIKPLSNLTKLTSLGLSKNKISD--IKSLSNLTKLTSLGLSKNKISD--IKSLSNLTKL 153

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             L+L   Q+SD      S +  L  L+L  N+I+D  +  L  LTNL  LNL    I D
Sbjct: 154 TKLDLVGNQISD--TTPLSNLTKLTSLDLWGNQISD--IKPLSNLTNLTFLNLVGNKISD 209

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
             +  L+ L  L  L LS  ++  S ++ LS  TNL  ++L    ISD +   L+ L+ L
Sbjct: 210 --IKPLSNLTKLTSLGLSKNKI--SDIKSLSNFTNLTKLDLVGNQISDTT--PLSNLTKL 263

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
            SL+L   QI+D  +  L++LT LT L L+G +I  S    L N  NL SL +    ++D
Sbjct: 264 TSLDLWGNQISD--IKPLSNLTNLTFLILWGNQI--SNIKPLSNLTNLTSLTLSLNQISD 319

Query: 314 AGVKHIKDLSSLTLLNLSQN 333
             +K + +L++LT L+L  N
Sbjct: 320 --IKPLSNLTNLTYLDLWGN 337



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 184/373 (49%), Gaps = 52/373 (13%)

Query: 4   NLSGLSN---LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           ++  LSN   LTSL   +N       +K+ + L  L KLDL            L  L KL
Sbjct: 121 DIKSLSNLTKLTSLGLSKNK---ISDIKSLSNLTKLTKLDL--VGNQISDTTPLSNLTKL 175

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            SL++ W N I  SD+KPLS LTNL  L +  +K++D  I  L  L KLT L L    ++
Sbjct: 176 TSLDL-WGNQI--SDIKPLSNLTNLTFLNLVGNKISD--IKPLSNLTKLTSLGLSKNKIS 230

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
              + SLS   +L  L+L   Q+SD      S +  L  L+L  N+I+D  +  L  LTN
Sbjct: 231 D--IKSLSNFTNLTKLDLVGNQISD--TTPLSNLTKLTSLDLWGNQISD--IKPLSNLTN 284

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  L L   G     +  L+ L NL  L LS  Q+  S ++ LS LTNL  ++L    IS
Sbjct: 285 LTFLIL--WGNQISNIKPLSNLTNLTSLTLSLNQI--SDIKPLSNLTNLTYLDLWGNKIS 340

Query: 241 DGSLRKLAGLSSLKSLNLDARQITD--------------------TGLAALTSLTGLTHL 280
           D  ++ L+ L++L  L L + +I+D                    + +  L+SLT LT L
Sbjct: 341 D--IKPLSNLTNLTYLYLLSNKISDIKPLSNLTNLTLLFLSLNQISDIKPLSSLTNLTFL 398

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
            L   +I+D     L N  NL SL +    ++D  +K + +L++LT L+L +N  ++D  
Sbjct: 399 ILSKNQISD--IKPLSNLTNLTSLGLSENKISD--IKPLSNLTNLTYLSLWENP-ISD-- 451

Query: 341 LELISGLTGLVSL 353
           ++ +S LT L  L
Sbjct: 452 IKPLSNLTNLTEL 464



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 155/368 (42%), Gaps = 100/368 (27%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           ++LS L+ LTSL   +N       +K+ + L  L KLDL            L  L KL S
Sbjct: 123 KSLSNLTKLTSLGLSKNKI---SDIKSLSNLTKLTKLDL--VGNQISDTTPLSNLTKLTS 177

Query: 63  LNIKWCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTD----- 97
           L++ W N I+D                    SD+KPLS LT L SL +S +K++D     
Sbjct: 178 LDL-WGNQISDIKPLSNLTNLTFLNLVGNKISDIKPLSNLTKLTSLGLSKNKISDIKSLS 236

Query: 98  ---------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 142
                          S    L  L KLT L+L G  ++   +  LS L +L +L L   Q
Sbjct: 237 NFTNLTKLDLVGNQISDTTPLSNLTKLTSLDLWGNQISD--IKPLSNLTNLTFLILWGNQ 294

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--------- 193
           +S+   +  S + +L  L L  N+I+D  +  L  LTNL  L+L    I D         
Sbjct: 295 ISN--IKPLSNLTNLTSLTLSLNQISD--IKPLSNLTNLTYLDLWGNKISDIKPLSNLTN 350

Query: 194 ---------------------------------EGLVNLTGLCNLKCLELSDTQVGSSGL 220
                                              +  L+ L NL  L LS  Q+  S +
Sbjct: 351 LTYLYLLSNKISDIKPLSNLTNLTLLFLSLNQISDIKPLSSLTNLTFLILSKNQI--SDI 408

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           + LS LTNL S+ LS   ISD  ++ L+ L++L  L+L    I+D  +  L++LT LT L
Sbjct: 409 KPLSNLTNLTSLGLSENKISD--IKPLSNLTNLTYLSLWENPISD--IKPLSNLTNLTEL 464

Query: 281 DLFGARIT 288
            L+    T
Sbjct: 465 YLWENPFT 472



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 34/173 (19%)

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-------------------- 265
           LTNL S+ LS   ISD  ++ L+ L+ L SL L   +I+D                    
Sbjct: 84  LTNLTSLGLSENKISD--IKPLSNLTKLTSLGLSKNKISDIKSLSNLTKLTSLGLSKNKI 141

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
           + + +L++LT LT LDL G +I+D+    L N   L SL++ G  ++D  +K + +L++L
Sbjct: 142 SDIKSLSNLTKLTKLDLVGNQISDTTP--LSNLTKLTSLDLWGNQISD--IKPLSNLTNL 197

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           T LNL  N  ++D  ++ +S LT L SL +S ++I+      +K L N  +LT
Sbjct: 198 TFLNLVGN-KISD--IKPLSNLTKLTSLGLSKNKIS-----DIKSLSNFTNLT 242



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 105/229 (45%), Gaps = 35/229 (15%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMK 59
           T  LS L+ LTSL    N       +K  + L NL  L L   + + I      L  L  
Sbjct: 254 TTPLSNLTKLTSLDLWGNQI---SDIKPLSNLTNLTFLILWGNQISNIKP----LSNLTN 306

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-----------------SGIAY 102
           L SL +   N I  SD+KPLS LTNL  L +  +K++D                 + I+ 
Sbjct: 307 LTSLTLS-LNQI--SDIKPLSNLTNLTYLDLWGNKISDIKPLSNLTNLTYLYLLSNKISD 363

Query: 103 LKGLQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161
           +K L  LT L L    +     +  LS+L +L +L L++ Q+SD   +  S + +L  L 
Sbjct: 364 IKPLSNLTNLTLLFLSLNQISDIKPLSSLTNLTFLILSKNQISD--IKPLSNLTNLTSLG 421

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLE 209
           L  N+I+D  +  L  LTNL  L+L    I D + L NLT L  L   E
Sbjct: 422 LSENKISD--IKPLSNLTNLTYLSLWENPISDIKPLSNLTNLTELYLWE 468


>gi|119485475|ref|ZP_01619803.1| Rab family protein [Lyngbya sp. PCC 8106]
 gi|119457231|gb|EAW38357.1| Rab family protein [Lyngbya sp. PCC 8106]
          Length = 457

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 192/377 (50%), Gaps = 49/377 (12%)

Query: 29  AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 88
           A   L+ +++LDL R ++I   L  L  L  L  LN+   N ITD  + PLS LTNL  L
Sbjct: 94  AQKSLLQVIELDLSR-SKI-SDLSPLITLPHLTRLNLSE-NQITD--LTPLSNLTNLTRL 148

Query: 89  QISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 147
            +S + + D S I+ L  LQ L L   E        L  LS L  L  L+L+  ++SD  
Sbjct: 149 NLSSNLIQDLSPISELPNLQILLLYKNE-----IEVLSPLSNLSGLTELSLDSNKISD-- 201

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV----NLTGLC 203
               S++ +L  L+L  N+I D  ++    L NL  L+L+   + D  L+    NLT L 
Sbjct: 202 ISSLSELNNLTNLSLSENQIQDLSIIA--NLENLTQLSLNGNKVNDISLISELQNLTKL- 258

Query: 204 NLKCLELSDTQVGSS---------------GLRHLSGLTNLESINLSFTGISDGSLRKLA 248
           NLK  ++ D    S+                +  LS LT LE+++LS   I++  ++ L+
Sbjct: 259 NLKTNQIEDLSSLSNLSNLKELNLDSNKLIDVSALSSLTQLETLSLSENNITN--IQPLS 316

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTH-LDLFGARITDSGAAYLRNFKNLRSLEIC 307
            L +L +L L + QI+D  + AL+SLT LT  L+L   +I+D     L N KNL  + + 
Sbjct: 317 NLENLITLQLRSNQISD--IKALSSLTNLTEDLNLIDNQISD--IKPLSNLKNLSRVGLS 372

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
              ++D  +K + DLS L +L L +N  +T+  ++ +S LT L  LN+ N++I +  +  
Sbjct: 373 KNQISD--LKPLSDLSKLVILYLDEN-KITE--VQPLSNLTNLTELNLWNNQIKT--IES 425

Query: 368 LKPLKNLRSLTLESCKV 384
           L  L NL  L L+   +
Sbjct: 426 LSTLDNLTYLGLQENPI 442



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 18/177 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS L+ L +LS   NN    Q     + L NL+ L L R  +I     ++K L  L +L 
Sbjct: 293 LSSLTQLETLSLSENNITNIQ---PLSNLENLITLQL-RSNQIS----DIKALSSLTNLT 344

Query: 65  IKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
            +  N I +  SD+KPLS L NL  + +S ++++D  +  L  L KL +L L+   +T  
Sbjct: 345 -EDLNLIDNQISDIKPLSNLKNLSRVGLSKNQISD--LKPLSDLSKLVILYLDENKITEV 401

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-DECLVHLKGL 178
               LS L +L  LNL   Q+     E  S + +L  L L  N I   EC V  K +
Sbjct: 402 --QPLSNLTNLTELNLWNNQIK--TIESLSTLDNLTYLGLQENPIEKKECPVQPKSI 454


>gi|18568221|gb|AAL75965.1|AF467461_1 PpaA [Danio rerio]
          Length = 386

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 172/326 (52%), Gaps = 48/326 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           + G+ N++SL +S C  +TD+G+  A+++ +  L +LNL  C                  
Sbjct: 81  IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCK----------------- 123

Query: 136 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 191
                 Q++D    + ++ + +L++L+LG  + IT+  L+ +  GL NL+SLNL SC  +
Sbjct: 124 ------QITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHV 177

Query: 192 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 240
            D G+ +L G+          L+ L L D Q +    L+H+S GL  L+ +NLSF G IS
Sbjct: 178 SDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGIS 237

Query: 241 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDL-FGARITDSGAAYL-R 296
           D  +  L+ ++ L +LNL +   I+DTG+  L+     L  LD+ F  ++ D   AY+ +
Sbjct: 238 DAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQ 297

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  ++
Sbjct: 298 GLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGID 357

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTL 379
           +   ++IT  GL  +  L  L+   L
Sbjct: 358 LYGCTKITKRGLERITQLPCLKVFNL 383



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 147/288 (51%), Gaps = 50/288 (17%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 109
           ++G+  +ESLN+  C  +TD+ +    +  + +L+ L +S C ++TDS +  + + L+ L
Sbjct: 81  IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRIAQYLKNL 140

Query: 110 TLLNLEGCP--------VTAACLDSLSALG---------------------------SLF 134
            LL+L GC         + A  L +L +L                            +L 
Sbjct: 141 ELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLE 200

Query: 135 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 190
           +L L  CQ L+D   +  SK +  LK LNL F   I+D  ++HL  +T L +LNL SC  
Sbjct: 201 HLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDN 260

Query: 191 IGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RK 246
           I D G+++L+ G   L  L++S   +VG   L +++ GL  L+S++L    ISD  + R 
Sbjct: 261 ISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRM 320

Query: 247 LAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 291
           +  +  LK+LN+    +ITD GL  +   LT LT +DL+G  +IT  G
Sbjct: 321 VRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRG 368



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 22/224 (9%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL NL SL+ R    ++  G+   AG+        + L  L L+ C ++    L ++ KG
Sbjct: 162 GLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKG 221

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L KL+ LN+ +C  I+D+ M  LS +T L +L + SC  ++D+GI +L  G  +L  L++
Sbjct: 222 LNKLKGLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDV 281

Query: 115 EGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNEIT 168
             C        SL+ +    Y    L+L  C +SDDG  +   ++  LK LN+G    IT
Sbjct: 282 SFCDKVGD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRIT 339

Query: 169 DECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 210
           D+ L  +   LT L  ++L  C  I   GL  +T L  LK   L
Sbjct: 340 DKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNL 383



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 127/245 (51%), Gaps = 32/245 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   + ++  L  L    C +++D+ +G    R    
Sbjct: 81  IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLG----RIAQY 136

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 275
           L NLE ++L   + I++  L  +A GL +LKSLNL + R ++D G+  L  +T       
Sbjct: 137 LKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 196

Query: 276 -GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             L HL L    ++TD    ++ +    L+  +L  CGG ++DAG+ H+  ++ L  LNL
Sbjct: 197 LTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGG-ISDAGMIHLSHMTQLWTLNL 255

Query: 331 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 387
               N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ +
Sbjct: 256 RSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDD 315

Query: 388 DIKRL 392
            I R+
Sbjct: 316 GINRM 320



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 7/165 (4%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLN 64
           GL+ L  L+      I+  GM   + +  L  L+L  C  I   G+++L  G ++L  L+
Sbjct: 221 GLNKLKGLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLD 280

Query: 65  IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTA 121
           + +C+ + D  +  ++ GL  LKSL +    ++D GI   ++ + +L  LN+  C  +T 
Sbjct: 281 VSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITD 340

Query: 122 ACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 164
             L+ ++  L  L  ++L  C +++  G E+ +++  LKV NLG 
Sbjct: 341 KGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNLGL 385


>gi|348505743|ref|XP_003440420.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oreochromis niloticus]
          Length = 403

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 180/339 (53%), Gaps = 50/339 (14%)

Query: 79  LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           + G+ +++SL +  C  +TD+G+  A+++ +  L +LNL  C                  
Sbjct: 89  IQGMPHIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCK----------------- 131

Query: 136 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 191
                 Q++D    + ++ + +L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 132 ------QITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHV 185

Query: 192 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 240
            D G+ +L+G+          L+ L L D Q +    L+H+S GL  L+ +NLSF G IS
Sbjct: 186 SDVGIGHLSGMTRSAAEGCLTLEKLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGIS 245

Query: 241 DGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL- 295
           D  +  L+ ++ L SLNL +   I+DTG+   A+ SL  LT LD+ F  +I D   AY+ 
Sbjct: 246 DAGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLR-LTGLDVSFCDKIGDQSLAYIA 304

Query: 296 RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSL 353
           +    L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  +
Sbjct: 305 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGI 364

Query: 354 NVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           ++   ++IT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 365 DLYGCTKITKRGLERITQLPCLKVLNLGLWQMTESERVR 403



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 50/303 (16%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLK-- 104
           ++G+  +ESLN+  C  +TD+ +    +  +++L+ L +S C ++TDS +     YLK  
Sbjct: 89  IQGMPHIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCKQITDSSLGRIAQYLKNL 148

Query: 105 ---------------------GLQKLTLLNLEGC-PVTAACLDSLSALG--------SLF 134
                                GL +L  LNL  C  V+   +  LS +         +L 
Sbjct: 149 EVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLTLE 208

Query: 135 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 190
            L L  CQ L+D   +  SK +  LKVLNL F   I+D  ++HL  +T+L SLNL SC  
Sbjct: 209 KLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLRSCDN 268

Query: 191 IGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RK 246
           I D G+++L  G   L  L++S   ++G   L +++ GL  L+S++L    ISD  + R 
Sbjct: 269 ISDTGIMHLAMGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRM 328

Query: 247 LAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRS 303
           +  +  LK+LN+    +ITD GL  +   LT LT +DL+G  +IT  G   +     L+ 
Sbjct: 329 VRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKV 388

Query: 304 LEI 306
           L +
Sbjct: 389 LNL 391



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 22/232 (9%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L SL+ R    ++  G+   +G+        + L KL L+ C ++    L ++ KG
Sbjct: 170 GLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLTLEKLTLQDCQKLTDLSLKHISKG 229

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L KL+ LN+ +C  I+D+ M  LS +T+L SL + SC  ++D+GI +L  G  +LT L++
Sbjct: 230 LNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLTGLDV 289

Query: 115 EGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEIT 168
             C        SL+ +    Y    L+L  C +SDDG  +  + +  LK LN+G    IT
Sbjct: 290 SFCDKIGD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRIT 347

Query: 169 DECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           D+ L  +   LT L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 348 DKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 399



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 34/255 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ ++ESLNL  C      G+G   + +++ L  L    C +++D+ +G    R    
Sbjct: 89  IQGMPHIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCKQITDSSLG----RIAQY 144

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 275
           L NLE + L   + I++  L  +A GL  LKSLNL + R ++D G+  L+ +T       
Sbjct: 145 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGC 204

Query: 276 -GLTHLDLFG-ARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             L  L L    ++TD    ++    N   + +L  CGG ++DAG+ H+  ++ L  LNL
Sbjct: 205 LTLEKLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGG-ISDAGMIHLSHMTHLCSLNL 263

Query: 331 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 387
               N++D   + L  G   L  L+VS   +I    L ++ + L  L+SL+L SC ++ +
Sbjct: 264 RSCDNISDTGIMHLAMGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 323

Query: 388 DIKRL--QSRDLPNL 400
            I R+  Q  +L  L
Sbjct: 324 GINRMVRQMHELKTL 338


>gi|290973418|ref|XP_002669445.1| predicted protein [Naegleria gruberi]
 gi|284082993|gb|EFC36701.1| predicted protein [Naegleria gruberi]
          Length = 280

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 112/224 (50%), Gaps = 1/224 (0%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
            L +L++G+N+I  E    +  +  L  LN+ +  IGDEG + ++ +  L  L++   Q+
Sbjct: 3   QLTLLDIGYNQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGNQI 62

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
              G R +S +  L  +++   GI D   + ++ +  L  LN+   QI D G   ++ + 
Sbjct: 63  SDEGARSISKMRQLTFLDIYGNGIGDKGAKSISEMQQLTLLNIGGNQIGDEGAKLISQMK 122

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            LT LD++   I   GA  +   + L SL I    +   GVK + ++  LT LN+ +N  
Sbjct: 123 QLTFLDIYCNEIDVEGAKCISEMQQLTSLNIGSNEIGVEGVKFLSEMQQLTSLNIGENL- 181

Query: 336 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           + D+  +LIS +  L  L++  + I   G + +  ++ L SL +
Sbjct: 182 IGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQLTSLNI 225



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 141/299 (47%), Gaps = 28/299 (9%)

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L+I + N I     K +S +  L  L I  +++ D G   +  +++LT L++ G  ++  
Sbjct: 7   LDIGY-NQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGNQISDE 65

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
              S+S +  L +L++    + D G +  S++  L +LN+G N+                
Sbjct: 66  GARSISKMRQLTFLDIYGNGIGDKGAKSISEMQQLTLLNIGGNQ---------------- 109

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
                   IGDEG   ++ +  L  L++   ++   G + +S +  L S+N+    I   
Sbjct: 110 --------IGDEGAKLISQMKQLTFLDIYCNEIDVEGAKCISEMQQLTSLNIGSNEIGVE 161

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            ++ L+ +  L SLN+    I D G   ++ +  LT LD++   I   GA  +   + L 
Sbjct: 162 GVKFLSEMQQLTSLNIGENLIGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQLT 221

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRI 360
           SL I   G+ D G K I ++  LT L++   CN +  +  + IS +  L SLN+SN++I
Sbjct: 222 SLNIGENGIGDEGAKLISEMKQLTFLDIY--CNEIGVEGAKYISEMKQLTSLNISNNQI 278



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 3/174 (1%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           N I  +G K  + +  L  LD+  C  I   G   +  + +L SLNI   N I    +K 
Sbjct: 108 NQIGDEGAKLISQMKQLTFLDI-YCNEIDVEGAKCISEMQQLTSLNI-GSNEIGVEGVKF 165

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           LS +  L SL I  + + D G   +  +++LT L++    +      S+S +  L  LN+
Sbjct: 166 LSEMQQLTSLNIGENLIGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQLTSLNI 225

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
               + D+G +  S++  L  L++  NEI  E   ++  +  L SLN+ +  IG
Sbjct: 226 GENGIGDEGAKLISEMKQLTFLDIYCNEIGVEGAKYISEMKQLTSLNISNNQIG 279


>gi|17548893|ref|NP_522233.1| GALA protein [Ralstonia solanacearum GMI1000]
          Length = 981

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 141/314 (44%), Gaps = 1/314 (0%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I   G +A      L  LD+      + G   L G   L SL ++    I D  ++ L
Sbjct: 637 NGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELR-DTGIEDGGIEAL 695

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           +  T L+SL IS + ++D   A L   + LT L   GC +T      L+ + SL  L + 
Sbjct: 696 AANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLEVG 755

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
              + D G    ++  SL+ LNL  N IT + L  L     L+SL++   G GD G + L
Sbjct: 756 SNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSLDVSRIGCGDRGALLL 815

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
           +G   L  L+L   +V S G R L+    L S++L    I   + R LA    L SLN+ 
Sbjct: 816 SGNRALTSLKLGFNRVSSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLNVS 875

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
             ++ D    AL     LT LD+   R++   A  L N   L SL I    +   G + +
Sbjct: 876 DCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALANNPVLASLYISHNDIGPEGAQAL 935

Query: 320 KDLSSLTLLNLSQN 333
            D +SLT L+   N
Sbjct: 936 ADSASLTFLDARAN 949



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 107/211 (50%), Gaps = 2/211 (0%)

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           +++  L +L  L  L SL+L   GIG+ G   L    +L  L LS   +G++G   L   
Sbjct: 592 VSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAASASLTSLNLSGNGIGTAGAEALGRN 650

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
           T L ++++S   I +   + LAG  SL SL L    I D G+ AL + T L  LD+ G  
Sbjct: 651 TVLTALDISANPIRNAGAQALAGSRSLTSLELRDTGIEDGGIEALAANTVLRSLDISGND 710

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           ++D  AA L   + L SL+  G GLT+   + +  + SL  L +  N ++ D  +  I+ 
Sbjct: 711 LSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLEVGSN-SIGDAGVLTIAR 769

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
              L SLN+S + IT  GL  L   + L+SL
Sbjct: 770 NASLRSLNLSRNPITPQGLYPLALSRTLKSL 800



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 6/226 (2%)

Query: 171 CLVHLKGLT-NLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
            L  L+ L  ++  L+L  C    + + GL  L  L  L  L+LSDT +G+ G + L+  
Sbjct: 568 SLADLRALPPSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAAS 626

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
            +L S+NLS  GI       L   + L +L++ A  I + G  AL     LT L+L    
Sbjct: 627 ASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELRDTG 686

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           I D G   L     LRSL+I G  L+D     +    +LT L  +  C LT+   + ++ 
Sbjct: 687 IEDGGIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLAR 745

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           +  L +L V ++ I  AG+  +    +LRSL L    +T   +  L
Sbjct: 746 IRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPL 791



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 137/332 (41%), Gaps = 67/332 (20%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           D + LSGL +   L+            +LKG    TL +L+  P T            L 
Sbjct: 40  DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 75

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           +L+L+ C             GS K             + +L GL  LESLN+    IGD 
Sbjct: 76  HLDLSEC------------TGSAKSF---------RAIAYLAGLP-LESLNVAGAEIGDG 113

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           G   L    +LK L  +   + +SG R L+    LES++L+   I D   + LAG  SL+
Sbjct: 114 GARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLR 173

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDL------------------FGARITDSGAAYLR 296
            L +    +TD G  AL     L  LDL                      IT  GA  L 
Sbjct: 174 HLAVRNGLVTDLGTRALALNPALVSLDLGNLVTETGNQVEQDGYDKTANNITAQGAWALA 233

Query: 297 NFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
             ++L+SL + G  L  D GV+ +    +LT LN++   N+T  + + ++    L SL+V
Sbjct: 234 QNRSLKSLSVQGNDLCGDDGVRALARNRTLTSLNVA-FTNMTSASAKALADNPVLTSLSV 292

Query: 356 S-NSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
             N  +  AG   L   ++L SL      ++A
Sbjct: 293 RWNYGLDDAGAMELAMSRSLTSLDARDTGMSA 324



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 133/313 (42%), Gaps = 37/313 (11%)

Query: 78  PLSGLTNLKSLQISC----------SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
           PLS L +L++L  S           S V+++G+AYL  L  L  L+L    +      +L
Sbjct: 566 PLS-LADLRALPPSVRHLDLSGCTGSAVSEAGLAYLARL-PLASLDLSDTGIGNRGAQAL 623

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           +A  SL  LNL+   +   G E   +   L  L++  N I +     L G  +L SL L 
Sbjct: 624 AASASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELR 683

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
             GI D G+  L     L+ L++S   +       L+    L S+  +  G+++   ++L
Sbjct: 684 DTGIEDGGIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQL 743

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           A + SL++L + +  I D G+  +     L  L+L    IT  G   L   + L+SL++ 
Sbjct: 744 ARIRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSLDVS 803

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
             G  D G                           L+SG   L SL +  +R++S G R 
Sbjct: 804 RIGCGDRGAL-------------------------LLSGNRALTSLKLGFNRVSSEGARR 838

Query: 368 LKPLKNLRSLTLE 380
           L   + L SL L 
Sbjct: 839 LAANRTLVSLDLR 851


>gi|290982223|ref|XP_002673830.1| predicted protein [Naegleria gruberi]
 gi|284087416|gb|EFC41086.1| predicted protein [Naegleria gruberi]
          Length = 572

 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 168/368 (45%), Gaps = 51/368 (13%)

Query: 54  LKGLMKLESLNIKWC----NCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQK 108
            + + KLES+   +C    N + + +MK +S L NLK    IS  ++ +  +  L  L+K
Sbjct: 214 FEHIRKLESITDLFCLTFRNNLFEEEMKFISPLGNLKKFHFISKGRIKEEAVKDLSTLKK 273

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L  L+L+   +TA                             F  + ++K LNL  N I 
Sbjct: 274 LEELHLDNNLITAC---------------------------NFPYLENMKSLNLQNNRIG 306

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           +E  ++L  L+NL  LNL +  IG +GL     L  LK L LS  QVG  G  +LS    
Sbjct: 307 NEGAINLCSLSNLTELNLSNNLIGGQGLKYFYKLSQLKILNLSSNQVGDVGANYLSENVK 366

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           LE+++L  + I +  LR    L  LK L L+  +I + GL  L++   L +L +    I 
Sbjct: 367 LENLSLKESLIGEEGLRNFGNLKLLKYLMLNNNKIGN-GLKYLSNCNELEYLHVGSNDIG 425

Query: 289 DSGAA--YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           D      +   F+NL  L+I    ++      I  ++ L  LN+S N ++ D  L L+S 
Sbjct: 426 DESVIELFRSEFRNLIHLDISHNYVSYKCCDVISKMNQLKELNISNNPSIGDTGLSLLSP 485

Query: 347 LTGLVSLNVSNSRITSAGL------------RHLKPLKNLRSLTLESCKVTAND--IKRL 392
           L+ ++ L  +N  ++ +G+             H+K  K L ++TL++    A +  I  L
Sbjct: 486 LS-IIKLEANNCGVSDSGIIDYLNFEPKISTLHIKSNK-LSNMTLQALISYAQNRSISEL 543

Query: 393 QSRDLPNL 400
           +  D PN 
Sbjct: 544 KISDSPNF 551



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 133/278 (47%), Gaps = 15/278 (5%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
            ++LS L  L  L    NN ITA     F  L N+  L+L+     + G +NL  L  L 
Sbjct: 265 VKDLSTLKKLEELHLD-NNLITACN---FPYLENMKSLNLQNNRIGNEGAINLCSLSNLT 320

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            LN+   N I    +K    L+ LK L +S ++V D G  YL    KL  L+L+   +  
Sbjct: 321 ELNLS-NNLIGGQGLKYFYKLSQLKILNLSSNQVGDVGANYLSENVKLENLSLKESLIGE 379

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL--KGLT 179
             L +   L  L YL LN  ++  +G +  S    L+ L++G N+I DE ++ L      
Sbjct: 380 EGLRNFGNLKLLKYLMLNNNKIG-NGLKYLSNCNELEYLHVGSNDIGDESVIELFRSEFR 438

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLT--NLESINLSF 236
           NL  L++    +  +    ++ +  LK L +S +  +G +GL  LS L+   LE+ N   
Sbjct: 439 NLIHLDISHNYVSYKCCDVISKMNQLKELNISNNPSIGDTGLSLLSPLSIIKLEANN--- 495

Query: 237 TGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
            G+SD G +  L     + +L++ + ++++  L AL S
Sbjct: 496 CGVSDSGIIDYLNFEPKISTLHIKSNKLSNMTLQALIS 533


>gi|95108203|emb|CAD17823.3| lrr-gala family type III effector protein (gala 2) [Ralstonia
            solanacearum GMI1000]
          Length = 1035

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 141/314 (44%), Gaps = 1/314 (0%)

Query: 20   NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
            N I   G +A      L  LD+      + G   L G   L SL ++    I D  ++ L
Sbjct: 691  NGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELR-DTGIEDGGIEAL 749

Query: 80   SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
            +  T L+SL IS + ++D   A L   + LT L   GC +T      L+ + SL  L + 
Sbjct: 750  AANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLEVG 809

Query: 140  RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
               + D G    ++  SL+ LNL  N IT + L  L     L+SL++   G GD G + L
Sbjct: 810  SNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSLDVSRIGCGDRGALLL 869

Query: 200  TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
            +G   L  L+L   +V S G R L+    L S++L    I   + R LA    L SLN+ 
Sbjct: 870  SGNRALTSLKLGFNRVSSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLNVS 929

Query: 260  ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
              ++ D    AL     LT LD+   R++   A  L N   L SL I    +   G + +
Sbjct: 930  DCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALANNPVLASLYISHNDIGPEGAQAL 989

Query: 320  KDLSSLTLLNLSQN 333
             D +SLT L+   N
Sbjct: 990  ADSASLTFLDARAN 1003



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 107/211 (50%), Gaps = 2/211 (0%)

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           +++  L +L  L  L SL+L   GIG+ G   L    +L  L LS   +G++G   L   
Sbjct: 646 VSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAASASLTSLNLSGNGIGTAGAEALGRN 704

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
           T L ++++S   I +   + LAG  SL SL L    I D G+ AL + T L  LD+ G  
Sbjct: 705 TVLTALDISANPIRNAGAQALAGSRSLTSLELRDTGIEDGGIEALAANTVLRSLDISGND 764

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           ++D  AA L   + L SL+  G GLT+   + +  + SL  L +  N ++ D  +  I+ 
Sbjct: 765 LSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLEVGSN-SIGDAGVLTIAR 823

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
              L SLN+S + IT  GL  L   + L+SL
Sbjct: 824 NASLRSLNLSRNPITPQGLYPLALSRTLKSL 854



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 6/226 (2%)

Query: 171 CLVHLKGLT-NLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
            L  L+ L  ++  L+L  C    + + GL  L  L  L  L+LSDT +G+ G + L+  
Sbjct: 622 SLADLRALPPSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAAS 680

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
            +L S+NLS  GI       L   + L +L++ A  I + G  AL     LT L+L    
Sbjct: 681 ASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELRDTG 740

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           I D G   L     LRSL+I G  L+D     +    +LT L  +  C LT+   + ++ 
Sbjct: 741 IEDGGIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLAR 799

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           +  L +L V ++ I  AG+  +    +LRSL L    +T   +  L
Sbjct: 800 IRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPL 845



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 137/332 (41%), Gaps = 67/332 (20%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           D + LSGL +   L+            +LKG    TL +L+  P T            L 
Sbjct: 94  DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 129

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           +L+L+ C             GS K             + +L GL  LESLN+    IGD 
Sbjct: 130 HLDLSEC------------TGSAKSF---------RAIAYLAGLP-LESLNVAGAEIGDG 167

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           G   L    +LK L  +   + +SG R L+    LES++L+   I D   + LAG  SL+
Sbjct: 168 GARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLR 227

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDL------------------FGARITDSGAAYLR 296
            L +    +TD G  AL     L  LDL                      IT  GA  L 
Sbjct: 228 HLAVRNGLVTDLGTRALALNPALVSLDLGNLVTETGNQVEQDGYDKTANNITAQGAWALA 287

Query: 297 NFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
             ++L+SL + G  L  D GV+ +    +LT LN++   N+T  + + ++    L SL+V
Sbjct: 288 QNRSLKSLSVQGNDLCGDDGVRALARNRTLTSLNVAF-TNMTSASAKALADNPVLTSLSV 346

Query: 356 S-NSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
             N  +  AG   L   ++L SL      ++A
Sbjct: 347 RWNYGLDDAGAMELAMSRSLTSLDARDTGMSA 378



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 133/313 (42%), Gaps = 37/313 (11%)

Query: 78  PLSGLTNLKSLQISC----------SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
           PLS L +L++L  S           S V+++G+AYL  L  L  L+L    +      +L
Sbjct: 620 PLS-LADLRALPPSVRHLDLSGCTGSAVSEAGLAYLARL-PLASLDLSDTGIGNRGAQAL 677

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           +A  SL  LNL+   +   G E   +   L  L++  N I +     L G  +L SL L 
Sbjct: 678 AASASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELR 737

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
             GI D G+  L     L+ L++S   +       L+    L S+  +  G+++   ++L
Sbjct: 738 DTGIEDGGIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQL 797

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           A + SL++L + +  I D G+  +     L  L+L    IT  G   L   + L+SL++ 
Sbjct: 798 ARIRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSLDVS 857

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
             G  D G                           L+SG   L SL +  +R++S G R 
Sbjct: 858 RIGCGDRGAL-------------------------LLSGNRALTSLKLGFNRVSSEGARR 892

Query: 368 LKPLKNLRSLTLE 380
           L   + L SL L 
Sbjct: 893 LAANRTLVSLDLR 905


>gi|290984372|ref|XP_002674901.1| predicted protein [Naegleria gruberi]
 gi|284088494|gb|EFC42157.1| predicted protein [Naegleria gruberi]
          Length = 599

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 125/256 (48%), Gaps = 3/256 (1%)

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           P+S L+NL  L I    + D  +  +   +KLT LN+  C +      S+  L +L +L+
Sbjct: 331 PISHLSNLTFLTIRGRNIADGDLECIGQFKKLTTLNVPSCNINQG-FKSICGLKNLTFLD 389

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           L+  ++  +  E  + + SL  L++  N I  E    +  L NL +L +    I DEG+ 
Sbjct: 390 LSYNKI--ESVESITNLKSLTQLDINGNRIGHEGAKSISQLDNLTNLQIGHNLIQDEGIK 447

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
            L+ +  L  L +++ Q+   G + +S    L S++L+   I     + L+ L++L  L 
Sbjct: 448 YLSTMQCLTTLGVAENQISIEGAKFISKSHQLTSLDLTNNVIETEGAKILSELNNLTGLF 507

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
           +   +I D G   ++++  LT LD+    ITD GA  + N   L +L I    + D G K
Sbjct: 508 VYGNRIRDEGAKYISTMQQLTILDIAYNEITDEGAKAISNLDQLSTLYIYSNEICDEGAK 567

Query: 318 HIKDLSSLTLLNLSQN 333
            I  +  LT+L++  N
Sbjct: 568 SICGMKQLTILDIDYN 583



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 144/299 (48%), Gaps = 4/299 (1%)

Query: 88  LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 147
           L+IS  ++    + ++  +++LT L++    +      ++S L  L  LN+ + ++  +G
Sbjct: 103 LEISYCRLEAEDVNFIGEMKQLTELDISLNNINCKGAITISQLSKLTKLNVYQTKMGVEG 162

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
            ++ SK+  L  L +G N +  E   H+  +  L  L++++  IG+EG+  ++ +  L  
Sbjct: 163 AKELSKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNMIGNEGIELISRMEQLTD 222

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267
           L++ D  + S G++ L  + +L ++N+    I D     L  +  LK+L      I   G
Sbjct: 223 LDVMDNNIRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNLITACNNIGMKG 282

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
            ++L++L  L  L + G  +      ++R    L  LE  G  L   G   I  LS+LT 
Sbjct: 283 FSSLSTLLNLESLVILG--LDGKSTDFIREMNQLTRLEFYGSNLEPKGFDPISHLSNLTF 340

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
           L + +  N+ D  LE I     L +LNV +  I + G + +  LKNL  L L   K+ +
Sbjct: 341 LTI-RGRNIADGDLECIGQFKKLTTLNVPSCNI-NQGFKSICGLKNLTFLDLSYNKIES 397



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 174/365 (47%), Gaps = 19/365 (5%)

Query: 36  LVKLDLERCTRIHGGLVNLKGLMK-LESLNIKW--CNCITDSDMKPLSGLTNLKSLQISC 92
           +++L++  C R+    VN  G MK L  L+I     NC     +  LS LT L   Q   
Sbjct: 100 MIRLEISYC-RLEAEDVNFIGEMKQLTELDISLNNINCKGAITISQLSKLTKLNVYQ--- 155

Query: 93  SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 152
           +K+   G   L  L++LT L +    + +     ++ +  L +L++N   + ++G E  S
Sbjct: 156 TKMGVEGAKELSKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNMIGNEGIELIS 215

Query: 153 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 212
           ++  L  L++  N I  E +  L  + +L +LN+ +  I DEG + L  +  LK L  + 
Sbjct: 216 RMEQLTDLDVMDNNIRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNLITAC 275

Query: 213 TQVGSSGLRHLSGLTNLES-INLSFTGISDGSLRKLAGLSSLKSL--NLDARQITDTGLA 269
             +G  G   LS L NLES + L   G S   +R++  L+ L+    NL+ +     G  
Sbjct: 276 NNIGMKGFSSLSTLLNLESLVILGLDGKSTDFIREMNQLTRLEFYGSNLEPK-----GFD 330

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
            ++ L+ LT L + G  I D     +  FK L +L +    + + G K I  L +LT L+
Sbjct: 331 PISHLSNLTFLTIRGRNIADGDLECIGQFKKLTTLNVPSCNI-NQGFKSICGLKNLTFLD 389

Query: 330 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 389
           LS N     +++E I+ L  L  L+++ +RI   G + +  L NL +L +    +    I
Sbjct: 390 LSYN---KIESVESITNLKSLTQLDINGNRIGHEGAKSISQLDNLTNLQIGHNLIQDEGI 446

Query: 390 KRLQS 394
           K L +
Sbjct: 447 KYLST 451



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 98/215 (45%), Gaps = 37/215 (17%)

Query: 25  QGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 82
           QG K+  GL NL  LDL    +I     + NLK L +L+ +N    N I     K +S L
Sbjct: 374 QGFKSICGLKNLTFLDLSY-NKIESVESITNLKSLTQLD-IN---GNRIGHEGAKSISQL 428

Query: 83  TNLKSLQISCSKVTDSGIAYLKGLQKLTLL-------NLEGCPVT--------------- 120
            NL +LQI  + + D GI YL  +Q LT L       ++EG                   
Sbjct: 429 DNLTNLQIGHNLIQDEGIKYLSTMQCLTTLGVAENQISIEGAKFISKSHQLTSLDLTNNV 488

Query: 121 -----AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
                A  L  L+ L  LF    NR  + D+G +  S +  L +L++ +NEITDE    +
Sbjct: 489 IETEGAKILSELNNLTGLFVYG-NR--IRDEGAKYISTMQQLTILDIAYNEITDEGAKAI 545

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
             L  L +L + S  I DEG  ++ G+  L  L++
Sbjct: 546 SNLDQLSTLYIYSNEICDEGAKSICGMKQLTILDI 580



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 4/167 (2%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMKLESL 63
           +S L NLT+L    N  I  +G+K  + +  L  L + E    I G     K   +L SL
Sbjct: 425 ISQLDNLTNLQIGHN-LIQDEGIKYLSTMQCLTTLGVAENQISIEGAKFISKS-HQLTSL 482

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           ++   N I     K LS L NL  L +  +++ D G  Y+  +Q+LT+L++    +T   
Sbjct: 483 DLT-NNVIETEGAKILSELNNLTGLFVYGNRIRDEGAKYISTMQQLTILDIAYNEITDEG 541

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
             ++S L  L  L +   ++ D+G +    +  L +L++ +N +++E
Sbjct: 542 AKAISNLDQLSTLYIYSNEICDEGAKSICGMKQLTILDIDYNVLSEE 588


>gi|168052598|ref|XP_001778727.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669846|gb|EDQ56425.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 643

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 178/414 (42%), Gaps = 85/414 (20%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL---KGL 106
           +  L G   L +L    C  +T++ ++ L+GLT ++ L ++ C K++D  + ++   K L
Sbjct: 88  MAYLGGCRHLRALRATDCKALTNNAIRQLTGLTAMEELDLARCRKISDDAVPHILSFKML 147

Query: 107 QKL---------------------TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 145
           +KL                      LL+L GCPVT A L S  ALG L +L+L   ++++
Sbjct: 148 RKLGLAETGLTTKGLLLLPGLSRLVLLDLGGCPVTDADLISFQALGMLEHLDLWGSKVTN 207

Query: 146 DGCEKFSKIGSLKVLNLGFNEIT----------------------------DECL--VHL 175
            G    S   +LK LNL    +T                            D  L  + L
Sbjct: 208 MGARCLSSFKTLKYLNLAMTAVTAIPQLNSLLSLNLCNCDVESIYGDGTFSDSLLRELFL 267

Query: 176 KGLT-------------NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
            G +             NL  L+L S  + D  L     +  L  L+L  T + +  +  
Sbjct: 268 SGASLSLKDVISGSNTRNLHLLDLASSRVND--LDAFVHIPKLAILDLRATGLTNELMLK 325

Query: 223 LSGL-TNLESINLSFTGISDGSLRKLAGLSS-LKSLNLDARQITDTGLAALTSLTGLTHL 280
             GL  NL  I+LS+T I    +  +AG +  ++ L+L+   + D     L     L  L
Sbjct: 326 FQGLGDNLRWIDLSYTKIDSEGVGAIAGHAPNVEQLSLNHTPVDDNVFIYLVHFPVLQSL 385

Query: 281 DLFGARITD------------SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
           +L G+++              S  +YL   ++LR L++   G+ DA +  +K+L  L+ L
Sbjct: 386 NLGGSKVNGFMTVGSEEFQQISVLSYLEQLQHLRRLDMRYTGVGDAALHGLKNLVQLSHL 445

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
           ++  N +L+D+ L+ +S    LV L +  + IT+ GL   KP   L  L L  C
Sbjct: 446 HIHSN-SLSDECLQQLSSFPNLVCLGIGGATITADGLLSYKPPSLLEELDLTDC 498



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 171/420 (40%), Gaps = 87/420 (20%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV----NLKGLMKL 60
           L G  +L +L      A+T   ++   GL  + +LDL RC +I    V    + K L KL
Sbjct: 91  LGGCRHLRALRATDCKALTNNAIRQLTGLTAMEELDLARCRKISDDAVPHILSFKMLRKL 150

Query: 61  ---------------------ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 99
                                  L++  C  +TD+D+     L  L+ L +  SKVT+ G
Sbjct: 151 GLAETGLTTKGLLLLPGLSRLVLLDLGGCP-VTDADLISFQALGMLEHLDLWGSKVTNMG 209

Query: 100 IAYLKGLQKLTLLNLEGCPVTAAC--------------LDSLSALGS-----LFYLNLNR 140
              L   + L  LNL    VTA                ++S+   G+     L  L L+ 
Sbjct: 210 ARCLSSFKTLKYLNLAMTAVTAIPQLNSLLSLNLCNCDVESIYGDGTFSDSLLRELFLSG 269

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
             LS       S   +L +L+L  + + D +  VH+     L  L+L + G+ +E ++  
Sbjct: 270 ASLSLKDVISGSNTRNLHLLDLASSRVNDLDAFVHIP---KLAILDLRATGLTNELMLKF 326

Query: 200 TGLC-NLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
            GL  NL+ ++LS T++ S G+  ++G   N+E ++L+ T + D     L     L+SLN
Sbjct: 327 QGLGDNLRWIDLSYTKIDSEGVGAIAGHAPNVEQLSLNHTPVDDNVFIYLVHFPVLQSLN 386

Query: 258 L--------------DARQIT----------------------DTGLAALTSLTGLTHLD 281
           L              + +QI+                      D  L  L +L  L+HL 
Sbjct: 387 LGGSKVNGFMTVGSEEFQQISVLSYLEQLQHLRRLDMRYTGVGDAALHGLKNLVQLSHLH 446

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
           +    ++D     L +F NL  L I G  +T  G+   K  S L  L+L+    LT+  L
Sbjct: 447 IHSNSLSDECLQQLSSFPNLVCLGIGGATITADGLLSYKPPSLLEELDLTDCWLLTEPAL 506



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 4/163 (2%)

Query: 227 TNLESINLSFTGISDGS-LRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG 284
           +NL+ +NLS     DG  +  L G   L++L   D + +T+  +  LT LT +  LDL  
Sbjct: 70  SNLQEVNLSGEATVDGEWMAYLGGCRHLRALRATDCKALTNNAIRQLTGLTAMEELDLAR 129

Query: 285 AR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
            R I+D    ++ +FK LR L +   GLT  G+  +  LS L LL+L   C +TD  L  
Sbjct: 130 CRKISDDAVPHILSFKMLRKLGLAETGLTTKGLLLLPGLSRLVLLDLG-GCPVTDADLIS 188

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
              L  L  L++  S++T+ G R L   K L+ L L    VTA
Sbjct: 189 FQALGMLEHLDLWGSKVTNMGARCLSSFKTLKYLNLAMTAVTA 231


>gi|428212495|ref|YP_007085639.1| hypothetical protein Oscil6304_2053 [Oscillatoria acuminata PCC
           6304]
 gi|428000876|gb|AFY81719.1| leucine-rich repeat (LRR) protein [Oscillatoria acuminata PCC 6304]
          Length = 455

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 183/372 (49%), Gaps = 34/372 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+GL+NL  L    N     + +   AGL NL  LDL    +I   + +L  L  L+ L 
Sbjct: 94  LAGLTNLEWLELSYNKI---EDIAPLAGLTNLEWLDL-SYNKIE-DIASLANLNNLKFLA 148

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AAC 123
           I+  N I   D+ PL+ LTNL+ L +  +K+ +  +A    L +LT L+L G  +   A 
Sbjct: 149 IR-DNQI--EDVAPLTNLTNLEVLWLDENKIGE--VASFASLTQLTQLHLSGNQIEDVAP 203

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L +L+ L SL +LN N+ +           +  L  L L  NEI D  L  LKGL  +  
Sbjct: 204 LANLTNLESL-WLNENKIK----DVASLVSMTKLTQLYLSSNEIED--LAPLKGLPEMAE 256

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           L L++  I +  +  L  L NL  LEL++ Q+    +  L+ LT L  + L+   I + S
Sbjct: 257 LQLNNNQIVN--VAPLASLTNLTTLELNENQI--KDIAPLASLTQLGFLQLTKNQIVNIS 312

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
              LA L+ L++L L   +I D  +A L SLT LT L L   +I D   A L +   L S
Sbjct: 313 --PLATLTKLETLQLLYNEIKD--VAPLASLTNLTFLTLGENQIKD--VAPLASLTELTS 366

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS- 362
           L++    + D  +  + +L+ LT L+LS N     K +  ++ LT L  L++ N+ I   
Sbjct: 367 LDLSNNEIKD--IDPLANLTQLTFLHLSDN---QIKDVAPLASLTQLKHLHLRNNEIKDI 421

Query: 363 AGLRHLKPLKNL 374
           A L +L  + N 
Sbjct: 422 ARLPNLTQMDNF 433



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 158/336 (47%), Gaps = 48/336 (14%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           D+ PL+GLTNL+ L++S +K+ D  IA L GL  L  L+L    +      SL+ L +L 
Sbjct: 90  DIAPLAGLTNLEWLELSYNKIED--IAPLAGLTNLEWLDLSYNKIEDIA--SLANLNNLK 145

Query: 135 YLNLNRCQLSDDG--------------------CEKFSKIGSLKVLNLGFNEITDECLVH 174
           +L +   Q+ D                         F+ +  L  L+L  N+I D  +  
Sbjct: 146 FLAIRDNQIEDVAPLTNLTNLEVLWLDENKIGEVASFASLTQLTQLHLSGNQIED--VAP 203

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLESL L+   I D  + +L  +  L  L LS  ++    L  L GL  +  + L
Sbjct: 204 LANLTNLESLWLNENKIKD--VASLVSMTKLTQLYLSSNEI--EDLAPLKGLPEMAELQL 259

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   I +  +  LA L++L +L L+  QI D  +A L SLT L  L L   +I +     
Sbjct: 260 NNNQIVN--VAPLASLTNLTTLELNENQIKD--IAPLASLTQLGFLQLTKNQIVNISP-- 313

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           L     L +L++    + D  V  +  L++LT L L +N     K +  ++ LT L SL+
Sbjct: 314 LATLTKLETLQLLYNEIKD--VAPLASLTNLTFLTLGEN---QIKDVAPLASLTELTSLD 368

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
           +SN+ I     + + PL NL  LT     ++ N IK
Sbjct: 369 LSNNEI-----KDIDPLANLTQLTF--LHLSDNQIK 397



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 123/251 (49%), Gaps = 33/251 (13%)

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
           D   E  SK+  L +     +EI D  +  L GLTNLE L L    I D  +  L GL N
Sbjct: 69  DRAQESLSKMTELGIRG---DEIKD--IAPLAGLTNLEWLELSYNKIED--IAPLAGLTN 121

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN---LDAR 261
           L+ L+LS  ++       ++ L NL   NL F  I D  +  +A L++L +L    LD  
Sbjct: 122 LEWLDLSYNKI-----EDIASLANLN--NLKFLAIRDNQIEDVAPLTNLTNLEVLWLDEN 174

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           +I +  +A+  SLT LT L L G +I D   A L N  NL SL +    + D  V  +  
Sbjct: 175 KIGE--VASFASLTQLTQLHLSGNQIED--VAPLANLTNLESLWLNENKIKD--VASLVS 228

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           ++ LT L LS N  + D  L  + GL  +  L ++N++I +       PL +L +LT  +
Sbjct: 229 MTKLTQLYLSSN-EIED--LAPLKGLPEMAELQLNNNQIVNVA-----PLASLTNLT--T 278

Query: 382 CKVTANDIKRL 392
            ++  N IK +
Sbjct: 279 LELNENQIKDI 289



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 120/281 (42%), Gaps = 66/281 (23%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL--------DLERCTRIHG------- 49
           L+ L+NL SL    N       +K  A L+++ KL        ++E    + G       
Sbjct: 204 LANLTNLESLWLNEN------KIKDVASLVSMTKLTQLYLSSNEIEDLAPLKGLPEMAEL 257

Query: 50  -----GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYL 103
                 +VN+  L  L +L     N     D+ PL+ LT L  LQ++ +++ + S +A L
Sbjct: 258 QLNNNQIVNVAPLASLTNLTTLELNENQIKDIAPLASLTQLGFLQLTKNQIVNISPLATL 317

Query: 104 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163
             L+ L LL  E        +  ++ L SL                      +L  L LG
Sbjct: 318 TKLETLQLLYNE--------IKDVAPLASL---------------------TNLTFLTLG 348

Query: 164 FNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
            N+I D  +  L  LT L SL+L +  I D + L NLT L     L LSD Q+    +  
Sbjct: 349 ENQIKD--VAPLASLTELTSLDLSNNEIKDIDPLANLTQLT---FLHLSDNQI--KDVAP 401

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           L+ LT L+ ++L    I D  + +L  L+ + + ++D   I
Sbjct: 402 LASLTQLKHLHLRNNEIKD--IARLPNLTQMDNFSVDGNPI 440


>gi|241724224|ref|XP_002413721.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
 gi|215507537|gb|EEC17029.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
          Length = 315

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 174/326 (53%), Gaps = 38/326 (11%)

Query: 60  LESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 117
           LE L ++ C  ++D  ++ LS  L NL SL +S C  VTD+G+ ++  +  L  L L GC
Sbjct: 1   LEYLGLEDCALVSDLGLEYLSLRLKNLVSLDLSMCLSVTDAGLEHIAKISSLKKLTLLGC 60

Query: 118 PVTAACLDSLSALGSLFYLNLNRCQLS---DDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                  + L++  S+F+L   R +L+      C +    G + ++N G           
Sbjct: 61  -------EDLTS-QSMFHLATARFRLNCLIISYCNQIEDTG-IHMINRG----------- 100

Query: 175 LKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQ-VGSSGLRHLSG-LTNLES 231
            +GL +L +LN+++C I D GL V    L +L  L +S+ + V   G+  ++  L  L  
Sbjct: 101 -QGLVSLTTLNVNACPITDVGLSVVAEKLRDLTALNISECEYVSKDGISVVAANLRKLRF 159

Query: 232 INLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG---LTHLDLFGAR 286
           IN+   TG+++ SL+ LA +SSL+ +NL    +IT  G+A + S  G   +  LD+    
Sbjct: 160 INMRLCTGLTNISLKHLARMSSLEVINLKGCTKITGKGMAFMASGEGQSSVLELDVSFTS 219

Query: 287 ITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELI 344
           I D+G  Y+ +  + LRSL +CG  ++D G+  I ++L +L  L +S+   +TD  ++++
Sbjct: 220 IGDTGLRYIAQGMQKLRSLSLCGCLISDKGLTRIARNLHALNTLKISRCSRITDNGIKVV 279

Query: 345 S-GLTGLVSLNVSN-SRITSAGLRHL 368
           +  L  L  +++   SRITSAG R L
Sbjct: 280 ACNLKRLRQIDLKGCSRITSAGKRSL 305



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 126/239 (52%), Gaps = 18/239 (7%)

Query: 178 LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINL 234
           L NL SL+L  C  + D GL ++  + +LK L L   + + S  + HL+     L  + +
Sbjct: 24  LKNLVSLDLSMCLSVTDAGLEHIAKISSLKKLTLLGCEDLTSQSMFHLATARFRLNCLII 83

Query: 235 SFTG-ISDGSLRKL---AGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARIT- 288
           S+   I D  +  +    GL SL +LN++A  ITD GL+ +   L  LT L++       
Sbjct: 84  SYCNQIEDTGIHMINRGQGLVSLTTLNVNACPITDVGLSVVAEKLRDLTALNISECEYVS 143

Query: 289 -DSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
            D  +    N + LR  ++ +C G LT+  +KH+  +SSL ++NL     +T K +  ++
Sbjct: 144 KDGISVVAANLRKLRFINMRLCTG-LTNISLKHLARMSSLEVINLKGCTKITGKGMAFMA 202

Query: 346 ---GLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
              G + ++ L+VS + I   GLR++ + ++ LRSL+L  C ++   + R+ +R+L  L
Sbjct: 203 SGEGQSSVLELDVSFTSIGDTGLRYIAQGMQKLRSLSLCGCLISDKGLTRI-ARNLHAL 260


>gi|242071889|ref|XP_002451221.1| hypothetical protein SORBIDRAFT_05g026000 [Sorghum bicolor]
 gi|241937064|gb|EES10209.1| hypothetical protein SORBIDRAFT_05g026000 [Sorghum bicolor]
          Length = 569

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 175/372 (47%), Gaps = 49/372 (13%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           G   LE L++KWC  I+D  ++ L+     L+S+ IS  KVT+  +  L  L+KL  + +
Sbjct: 125 GCPGLERLSVKWCREISDIGVELLAKKCPQLRSVDISYLKVTNESLRSLSTLEKLEDIAM 184

Query: 115 EGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNEITDECL 172
            GC  +    L  LS   SL    +  C LS     K S IG +L VL L   EI    L
Sbjct: 185 VGCLFIDDDGLQMLSMCNSLQ--EIETCLLS-----KLSTIGETLTVLRLDGLEIFASNL 237

Query: 173 VHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC--------------------------- 203
             +     NL  + L  C GI D+G+V+L   C                           
Sbjct: 238 QAIGSTCKNLVEIGLSKCNGITDDGIVSLVAHCCDLRTIDVTCCHLLTNDALAAIAENCR 297

Query: 204 NLKCLELSDTQ-VGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-A 260
            ++CL+L     +   GL  ++ L ++L+ I+L+   I+D +L+ LA  S L  L L   
Sbjct: 298 KIECLQLESCPFISEKGLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKLGLC 357

Query: 261 RQITDTGLAALTSLTG-LTHLDLFGAR-ITDSG-AAYLRNFKNLRSLEIC-GGGLTDAGV 316
             I+D GL  ++S  G L  LDL+    ITD G AA     K +R L +C    +TDAG+
Sbjct: 358 SSISDEGLVYISSNCGKLVELDLYRCSGITDDGLAAVASGCKKIRVLNLCYCTQITDAGL 417

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHL-KPLKN 373
           KH+  L  LT L L     +T   +  I+ G T L+ L++     +  AGL  L +  +N
Sbjct: 418 KHVSALEELTNLELRCLVRITGIGITSIAIGCTSLIELDLKRCYSVDDAGLWALSRYSQN 477

Query: 374 LRSLTLESCKVT 385
           LR LT+  C+VT
Sbjct: 478 LRQLTISYCQVT 489



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 28/148 (18%)

Query: 35  NLVKLDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 92
            LV+LDL RC+ I   GL  +  G  K+  LN+ +C  ITD+ +K +S L  L +L++ C
Sbjct: 374 KLVELDLYRCSGITDDGLAAVASGCKKIRVLNLCYCTQITDAGLKHVSALEELTNLELRC 433

Query: 93  -SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD-GCEK 150
             ++T  GI  +            GC              SL  L+L RC   DD G   
Sbjct: 434 LVRITGIGITSIA----------IGCT-------------SLIELDLKRCYSVDDAGLWA 470

Query: 151 FSKIGS-LKVLNLGFNEITDECLVHLKG 177
            S+    L+ L + + ++T   L HL G
Sbjct: 471 LSRYSQNLRQLTISYCQVTGLGLCHLLG 498



 Score = 42.0 bits (97), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 149/345 (43%), Gaps = 81/345 (23%)

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 150
           C  VTD G+A +            GCP              L  L++  C ++SD G E 
Sbjct: 111 CLGVTDVGLAKVA----------VGCP-------------GLERLSVKWCREISDIGVEL 147

Query: 151 FSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN----- 204
            +K    L+ +++ + ++T+E L  L  L  LE + +  C   D+  + +  +CN     
Sbjct: 148 LAKKCPQLRSVDISYLKVTNESLRSLSTLEKLEDIAMVGCLFIDDDGLQMLSMCNSLQEI 207

Query: 205 --------------LKCLELSDTQVGSSGLRHL-SGLTNLESINLS-FTGIS-DGSLRKL 247
                         L  L L   ++ +S L+ + S   NL  I LS   GI+ DG +  +
Sbjct: 208 ETCLLSKLSTIGETLTVLRLDGLEIFASNLQAIGSTCKNLVEIGLSKCNGITDDGIVSLV 267

Query: 248 AGLSSLKSLNL----------------DARQ-----------ITDTGLAALTSL-TGLTH 279
           A    L+++++                + R+           I++ GL  +T+L + L  
Sbjct: 268 AHCCDLRTIDVTCCHLLTNDALAAIAENCRKIECLQLESCPFISEKGLERITTLCSHLKE 327

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNL 336
           +DL   RI D+   +L +   L  L+  +C   ++D G+ +I  +   L  L+L +   +
Sbjct: 328 IDLTDCRINDTALKHLASCSELLILKLGLC-SSISDEGLVYISSNCGKLVELDLYRCSGI 386

Query: 337 TDKTLELI-SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
           TD  L  + SG   +  LN+   ++IT AGL+H+  L+ L +L L
Sbjct: 387 TDDGLAAVASGCKKIRVLNLCYCTQITDAGLKHVSALEELTNLEL 431


>gi|406831321|ref|ZP_11090915.1| hypothetical protein SpalD1_06780 [Schlesneria paludicola DSM
           18645]
          Length = 785

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/276 (34%), Positives = 146/276 (52%), Gaps = 22/276 (7%)

Query: 143 LSDDGC---EKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEG 195
           LS DG    E  S++  LK   +LNL    I+D     L+ L  +  LNL+ C  + D  
Sbjct: 508 LSADGTISSEIVSQLALLKGRLILNLEGARISDAGTAQLRALP-IVGLNLELCSQLTDAT 566

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISD------GSLRKLA 248
             +L+GL  L  L LS T V S+GL  ++    L ++ L     I+D      GS+++L 
Sbjct: 567 FSSLSGLKQLVALVLSGTNVTSTGLTQVAENLPLVALELELCDAINDDVCLTLGSMKRLR 626

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
            L+ LK    + R I+D GL  L +LT L  L+L+G ++TD+G  +L++ K LR L++  
Sbjct: 627 WLN-LKKSGFEKRGISDIGLEQLKTLTELEMLNLYGNKVTDAGLIHLQSLKRLRDLDLSL 685

Query: 309 GGLTDAGVKHIKDLSSLTLLNLS-----QNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
             L DAG++ +  L SL  LNL         +LTD+    ++ L  L  LN++ S++T +
Sbjct: 686 LNLNDAGIESLSPLISLERLNLMFTEGFAGPSLTDRATRSLTPLQQLTWLNLNGSKLTDS 745

Query: 364 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
           GL  L+ L  LR+L +   KVT +  ++ + R LP 
Sbjct: 746 GLEQLQELNQLRTLHVVRTKVTESGREKFR-RALPE 780



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 131/280 (46%), Gaps = 40/280 (14%)

Query: 39  LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 98
           L+LE       G   L+ L  +  LN++ C+ +TD+    LSGL  L +L +S + VT +
Sbjct: 531 LNLEGARISDAGTAQLRAL-PIVGLNLELCSQLTDATFSSLSGLKQLVALVLSGTNVTST 589

Query: 99  GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
           G+  +     L  L LE C                         ++DD C     +  L+
Sbjct: 590 GLTQVAENLPLVALELELCDA-----------------------INDDVCLTLGSMKRLR 626

Query: 159 VLNL---GFNE--ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
            LNL   GF +  I+D  L  LK LT LE LNL    + D GL++L  L  L+ L+LS  
Sbjct: 627 WLNLKKSGFEKRGISDIGLEQLKTLTELEMLNLYGNKVTDAGLIHLQSLKRLRDLDLSLL 686

Query: 214 QVGSSGLRHLSGLTNLESINLSFT------GISDGSLRKLAGLSSLKSLNLDARQITDTG 267
            +  +G+  LS L +LE +NL FT       ++D + R L  L  L  LNL+  ++TD+G
Sbjct: 687 NLNDAGIESLSPLISLERLNLMFTEGFAGPSLTDRATRSLTPLQQLTWLNLNGSKLTDSG 746

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           L  L  L  L  L +   ++T+SG    R     R+L  C
Sbjct: 747 LEQLQELNQLRTLHVVRTKVTESGREKFR-----RALPEC 781



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 103/222 (46%), Gaps = 26/222 (11%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +LSGL  L +L     N +T+ G+   A  + LV L+LE C  I+  +            
Sbjct: 569 SLSGLKQLVALVLSGTN-VTSTGLTQVAENLPLVALELELCDAINDDV------------ 615

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
                 C+T   MK L  L NLK        ++D G+  LK L +L +LNL G  VT A 
Sbjct: 616 ------CLTLGSMKRLRWL-NLKKSGFEKRGISDIGLEQLKTLTELEMLNLYGNKVTDAG 668

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE------ITDECLVHLKG 177
           L  L +L  L  L+L+   L+D G E  S + SL+ LNL F E      +TD     L  
Sbjct: 669 LIHLQSLKRLRDLDLSLLNLNDAGIESLSPLISLERLNLMFTEGFAGPSLTDRATRSLTP 728

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L  L  LNL+   + D GL  L  L  L+ L +  T+V  SG
Sbjct: 729 LQQLTWLNLNGSKLTDSGLEQLQELNQLRTLHVVRTKVTESG 770


>gi|290972775|ref|XP_002669126.1| predicted protein [Naegleria gruberi]
 gi|284082669|gb|EFC36382.1| predicted protein [Naegleria gruberi]
          Length = 467

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 193/409 (47%), Gaps = 45/409 (11%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           T+ +S L+ L S+  + NN I    M++ A +  L+ LD+  C R      NL+G+  L 
Sbjct: 57  TKLVSSLTQLKSIVLKFNN-INEYEMESIASMNKLISLDI-GCAR-----TNLEGIKILS 109

Query: 62  S------LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYLKGLQKLTLL 112
           S      LNI++        M+ +S +T+L+ L IS + ++        YLK L+KLT L
Sbjct: 110 SKDNFTELNIEFSFFDQVPYMEYVSKMTDLRKLDISNNPISLNRAKSANYLKSLEKLTDL 169

Query: 113 NLEGCPVTAACLDSLSALG---------------------SLFYL---NLNRCQLSDDGC 148
            +    +    L S+S L                      S+F L   ++    + ++G 
Sbjct: 170 TVTYLDMDLEFLKSISNLKFLTSLSIYGNLVGIEGVKIICSMFQLKKLDITLNAIGEEGA 229

Query: 149 EKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
           +  S  +  L  L +G N+I D+    +  +  L +L+L+   IG +GL  +  +  LK 
Sbjct: 230 KLISNSLKQLNTLRIGDNQIGDKGAESISSMKTLTALDLEESNIGPQGLEFICQMDQLKS 289

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267
           L L+   +G S L  ++ LTNL  I+L  T I    ++ ++ ++ L+++N+   ++ D  
Sbjct: 290 LMLNFNTIGGSRLP-INALTNLTEISLVLTNIGIEIVKSISLITKLRNVNISDNRLGDEC 348

Query: 268 LAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
           L  +  SL  LT LD+    +T++G  YL + KNL  L      L D  ++H+  L  L 
Sbjct: 349 LEIIGNSLFNLTELDISENNMTENGTKYLSSLKNLTHLNAEDNRLNDESIQHLCSLKKLK 408

Query: 327 LLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
            L ++ N  + D+   LI+  +  L  ++  N++ T  G   LK  K+L
Sbjct: 409 SLYINNN-QVGDEGFALIANSMKQLRLVHAHNNKETEIGRTLLKSRKHL 456


>gi|307215039|gb|EFN89866.1| F-box/LRR-repeat protein 14 [Harpegnathos saltator]
          Length = 457

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 164/323 (50%), Gaps = 43/323 (13%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF 134
           L G+ NL++L +S C  +TD+GI   + + L  LT+LNL  C  VT   L  ++     +
Sbjct: 150 LRGVPNLEALNLSGCYNITDTGIMSGFCQELPTLTVLNLSLCKQVTDTSLGRIAQ----Y 205

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGD 193
             NL   +L           G   + N G        +V   GL  L+ L+L SC  + D
Sbjct: 206 LKNLEHLELG----------GCCNITNTGL-------MVIAWGLKKLKRLDLRSCWHVSD 248

Query: 194 EGLVNLTGL-------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGS 243
           +G+  L GL         L+ L L D Q +    LR++S GLT L+SINLSF   I+D  
Sbjct: 249 QGIAYLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKSINLSFCVCITDSG 308

Query: 244 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFK 299
           ++ LA +SSL+ LNL +   I+D G+A L    + +T LD+ F  +I D    ++ +   
Sbjct: 309 VKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLF 368

Query: 300 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN 357
           NL+SL +    ++D G+ K  K L  L  LN+ Q   LTD++L  +   +  L  +++  
Sbjct: 369 NLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRSLHTMAENMKHLKCIDLYG 428

Query: 358 -SRITSAGLRHLKPLKNLRSLTL 379
            ++IT++GL  +  L  L +L L
Sbjct: 429 CTKITTSGLERIMKLPQLSTLNL 451



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 124/249 (49%), Gaps = 39/249 (15%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL-------INLVKLDLERCTRIHG-GLVNLK-GL 57
           GL  L  L  R    ++ QG+   AGL       + L  L L+ C R+    L N+  GL
Sbjct: 231 GLKKLKRLDLRSCWHVSDQGIAYLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGL 290

Query: 58  MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLE 115
             L+S+N+ +C CITDS +K L+ +++L+ L + SC  ++D G+AYL +G  ++T L++ 
Sbjct: 291 TTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVS 350

Query: 116 GCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
            C      A +     L +L  L+L+ CQ+SD+G  K +K                    
Sbjct: 351 FCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKIAKT------------------- 391

Query: 174 HLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLE 230
               L +LE+LN+  C  + D  L  +   + +LKC++L   T++ +SGL  +  L  L 
Sbjct: 392 ----LHDLETLNIGQCSRLTDRSLHTMAENMKHLKCIDLYGCTKITTSGLERIMKLPQLS 447

Query: 231 SINLSFTGI 239
           ++NL    +
Sbjct: 448 TLNLGLWHV 456



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 165/347 (47%), Gaps = 61/347 (17%)

Query: 25  QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG--- 81
           Q    FA L+      ++  +  HG    L+G+  LE+LN+  C  ITD+ +  +SG   
Sbjct: 121 QAPALFASLVRRGVKKVQVLSLRHGLSAVLRGVPNLEALNLSGCYNITDTGI--MSGFCQ 178

Query: 82  -LTNLKSLQIS-CSKVTDSGIA----YLK-----------------------GLQKLTLL 112
            L  L  L +S C +VTD+ +     YLK                       GL+KL  L
Sbjct: 179 ELPTLTVLNLSLCKQVTDTSLGRIAQYLKNLEHLELGGCCNITNTGLMVIAWGLKKLKRL 238

Query: 113 NLEGC-PVTAACLDSLSALG-------SLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNL 162
           +L  C  V+   +  L+ L        +L +L+L  CQ LSD+     S  + +LK +NL
Sbjct: 239 DLRSCWHVSDQGIAYLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKSINL 298

Query: 163 GFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSS 218
            F   ITD  + HL  +++L  LNL SC  I D G+  L  G   +  L++S   ++G  
Sbjct: 299 SFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQ 358

Query: 219 GLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNL-DARQITDTGLAALTS-L 274
            L H+S GL NL+S++LS   ISD  + K+A  L  L++LN+    ++TD  L  +   +
Sbjct: 359 ALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRSLHTMAENM 418

Query: 275 TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
             L  +DL+G  +IT SG   +     L +L +        G+ H++
Sbjct: 419 KHLKCIDLYGCTKITTSGLERIMKLPQLSTLNL--------GLWHVR 457



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 128/251 (50%), Gaps = 45/251 (17%)

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVNLTGLC---------NLK-CLELSDTQVGSSGLRHL 223
           L+G+ NLE+LNL  C  I D G+  ++G C         NL  C +++DT +G    R  
Sbjct: 150 LRGVPNLEALNLSGCYNITDTGI--MSGFCQELPTLTVLNLSLCKQVTDTSLG----RIA 203

Query: 224 SGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT----- 275
             L NLE + L     I++  L  +A GL  LK L+L +   ++D G+A L  L      
Sbjct: 204 QYLKNLEHLELGGCCNITNTGLMVIAWGLKKLKRLDLRSCWHVSDQGIAYLAGLNREADG 263

Query: 276 --GLTHLDLFG-ARITDSGAAYLRN----FKNLRSLE----ICGGGLTDAGVKHIKDLSS 324
              L HL L    R++D     LRN       L+S+     +C   +TD+GVKH+  +SS
Sbjct: 264 NLALEHLSLQDCQRLSDEA---LRNVSLGLTTLKSINLSFCVC---ITDSGVKHLARMSS 317

Query: 325 LTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLES 381
           L  LNL    N++D  +  L  G + + SL+VS   +I    L H+ + L NL+SL+L +
Sbjct: 318 LRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSA 377

Query: 382 CKVTANDIKRL 392
           C+++   I ++
Sbjct: 378 CQISDEGICKI 388


>gi|422811192|ref|ZP_16859602.1| internalin P4 [Listeria monocytogenes FSL J1-208]
 gi|378750825|gb|EHY61417.1| internalin P4 [Listeria monocytogenes FSL J1-208]
          Length = 776

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 153/306 (50%), Gaps = 30/306 (9%)

Query: 99  GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
           G+ YL  L +L L N++      + L  LS L  L  ++    Q+SD      S++ +L 
Sbjct: 95  GVQYLNNLTELRLENVDNS---VSDLRPLSGLIKLEVISFYHSQISD--LSPLSELINLT 149

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
            L L  N+I+D  +  L   TNL +LN+ S  I D  L  L+ L NL  L+  + Q+  S
Sbjct: 150 SLTLNDNQISD--ISPLANSTNLTTLNMSSNKISD--LSPLSNLSNLNKLDFRENQI--S 203

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
            L  LSGL NL S+ ++   ISD  +  LA L++L +LN+   QITD    +        
Sbjct: 204 DLSPLSGLINLTSLTINANKISD--ISPLANLTNLTTLNMGINQITDLSSLSGLISLVDL 261

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
           HL +   +ITD  A  L +  NLRSL+I            I DLSSL+ L   +  +L D
Sbjct: 262 HLSV--NQITDISA--LSDLTNLRSLDIDHN--------QIIDLSSLSNLTNLKRLHLVD 309

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDL 397
             +  I+ L+GL++L     RI    ++ + PL +L +  LE   V +N I  + S ++L
Sbjct: 310 NQISSITPLSGLINLTDLEIRINQ--VKDVSPLSSLAN--LEMLYVDSNQISDISSLKNL 365

Query: 398 PNLVSF 403
            NLV F
Sbjct: 366 KNLVLF 371



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 160/339 (47%), Gaps = 66/339 (19%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L+ + N+++ S   +N  + +G++    L NL +L LE        L  L GL+KLE 
Sbjct: 72  DELNSVENISADSGLYDNVASIEGVQY---LNNLTELRLENVDNSVSDLRPLSGLIKLEV 128

Query: 63  LNIKWCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTD-SGIA 101
           ++  + + I+D                    SD+ PL+  TNL +L +S +K++D S ++
Sbjct: 129 ISF-YHSQISDLSPLSELINLTSLTLNDNQISDISPLANSTNLTTLNMSSNKISDLSPLS 187

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161
            L  L KL     +      + L  LS L +L  L +N  ++SD      + + +L  LN
Sbjct: 188 NLSNLNKLDFRENQ-----ISDLSPLSGLINLTSLTINANKISD--ISPLANLTNLTTLN 240

Query: 162 LGFNEITDEC--------------------LVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           +G N+ITD                      +  L  LTNL SL++D   I D  L +L+ 
Sbjct: 241 MGINQITDLSSLSGLISLVDLHLSVNQITDISALSDLTNLRSLDIDHNQIID--LSSLSN 298

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L NLK L L D Q+  S +  LSGL NL  + +    + D  +  L+ L++L+ L +D+ 
Sbjct: 299 LTNLKRLHLVDNQI--SSITPLSGLINLTDLEIRINQVKD--VSPLSSLANLEMLYVDSN 354

Query: 262 QITDTGLAALTSLTGLTHLDLFGAR---ITDSGAAYLRN 297
           QI+D     ++SL  L +L LF A    I +    Y +N
Sbjct: 355 QISD-----ISSLKNLKNLVLFSAHSQTIVNKPVNYQKN 388


>gi|449134939|ref|ZP_21770403.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
 gi|448886418|gb|EMB16825.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
          Length = 341

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 116/249 (46%), Gaps = 2/249 (0%)

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           D+ +K LS  + +  L +  +   D  +  L  L  L  L + G     A   S+S L +
Sbjct: 83  DNAVKLLSKTSTVSELFMPAAAWADGTVLRLAALPNLKRLRIYGKEFDDAKAKSISGLPA 142

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  +      ++DDG    +++  L+ ++L  + +TD+ L+ +  L  L  LNL    I 
Sbjct: 143 LIAVTFQDTSVTDDGASVLAELNELQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKIT 202

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
            E    ++ L  L+ LEL++T  G  G+  ++ +  LE +NL  T I + SL+   G +S
Sbjct: 203 GEAFEPISKLP-LEDLELAETDFGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTS 261

Query: 253 LKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           L +LN+D    IT+  +  + SL  L  L L    +       L+  + L +L +   GL
Sbjct: 262 LTALNIDNCPAITEEAIPVIVSLPHLKLLHLGKTSVAPDALPQLKPLQELETLFVTNLGL 321

Query: 312 TDAGVKHIK 320
            +   K ++
Sbjct: 322 EEGPAKKLE 330



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 15/227 (6%)

Query: 31  AGLINLVKLDLERCTRIHGGLVN------LKGLMKLESLNIKWCNCITDSDMKPLSGLTN 84
           A L NL +L      RI+G   +      + GL  L ++  +    +TD     L+ L  
Sbjct: 114 AALPNLKRL------RIYGKEFDDAKAKSISGLPALIAVTFQ-DTSVTDDGASVLAELNE 166

Query: 85  LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
           L+ + +  S VTD  +  +  L KLT LNL G  +T    + +S L  L  L L      
Sbjct: 167 LQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKITGEAFEPISKL-PLEDLELAETDFG 225

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 203
            +G    + I  L+ +NL   +I +E L   +G T+L +LN+D+C  I +E +  +  L 
Sbjct: 226 PEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTSLTALNIDNCPAITEEAIPVIVSLP 285

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           +LK L L  T V    L  L  L  LE++ ++  G+ +G  +KL  +
Sbjct: 286 HLKLLHLGKTSVAPDALPQLKPLQELETLFVTNLGLEEGPAKKLEAM 332



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 2/260 (0%)

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
           D+  +  SK  ++  L +      D  ++ L  L NL+ L +      D    +++GL  
Sbjct: 83  DNAVKLLSKTSTVSELFMPAAAWADGTVLRLAALPNLKRLRIYGKEFDDAKAKSISGLPA 142

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           L  +   DT V   G   L+ L  L+ I+L  + ++D +L  ++ L  L  LNL   +IT
Sbjct: 143 LIAVTFQDTSVTDDGASVLAELNELQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKIT 202

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 324
                 ++ L  L  L+L        G   + N + L  + +    + +  +K  +  +S
Sbjct: 203 GEAFEPISKLP-LEDLELAETDFGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTS 261

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           LT LN+     +T++ + +I  L  L  L++  + +    L  LKPL+ L +L + +  +
Sbjct: 262 LTALNIDNCPAITEEAIPVIVSLPHLKLLHLGKTSVAPDALPQLKPLQELETLFVTNLGL 321

Query: 385 TANDIKRLQSRDLPNLVSFR 404
                K+L++   PNL  F 
Sbjct: 322 EEGPAKKLEAM-FPNLKRFE 340



 Score = 38.1 bits (87), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%)

Query: 24  AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 83
            +GM A A +  L K++L      +  L   +G   L +LNI  C  IT+  +  +  L 
Sbjct: 226 PEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTSLTALNIDNCPAITEEAIPVIVSLP 285

Query: 84  NLKSLQISCSKVTDSGIAYLKGLQKLTLL 112
           +LK L +  + V    +  LK LQ+L  L
Sbjct: 286 HLKLLHLGKTSVAPDALPQLKPLQELETL 314


>gi|345310405|ref|XP_001520129.2| PREDICTED: insulin-like growth factor-binding protein complex acid
           labile subunit-like [Ornithorhynchus anatinus]
          Length = 604

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 163/378 (43%), Gaps = 3/378 (0%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 68
            NL SLS   N     +G  AFAGL  L +L+L   T         +GL  L  L +   
Sbjct: 143 PNLASLSLANNRLGQLEG-AAFAGLCQLGELNLGWNTLAVLPDAVFRGLPHLRELVLA-G 200

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N +        +GL  L+ L +S + +         GL +L  L L G  ++A    +  
Sbjct: 201 NRLAYLQPPLFAGLGELQELDLSTNSLRSVKAHVFAGLPRLQKLFLRGNQLSAVAPRAFL 260

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L +L +L+L+  +L+    + F  + SL VL L  N IT       + L +LE L L  
Sbjct: 261 GLRALRWLDLSHNRLAVLFEDTFLGLPSLHVLRLSANVITSLRPQAFRDLPHLEELQLAH 320

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             +G        GL  L+ L L+D  +   G    +GL  L  +NLS   ++    +   
Sbjct: 321 NRLGALAAGAFEGLARLEVLALNDNHIREIGPGAFAGLARLAVVNLSGNCLAALPAQTFR 380

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
           GL++L SL+L+   +      A   L  L  L L    IT      L +   L  L++ G
Sbjct: 381 GLAALHSLHLERACLGRVPAGAFAGLVALRRLSLGHNGITAIEEQGLHDLTGLLELDLTG 440

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
             LT    +  +DL+ L  L L+ N  L D   E +  L  L  L+++++R+ +      
Sbjct: 441 NRLTHLPTRAFRDLARLEYLLLAGN-QLADLAPEALLPLRRLSWLDLAHNRLGAVAAGLF 499

Query: 369 KPLKNLRSLTLESCKVTA 386
            PL +LR L+L +  + A
Sbjct: 500 APLASLRFLSLRNNSLRA 517



 Score = 39.3 bits (90), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 111/321 (34%), Gaps = 34/321 (10%)

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
           C C  D D          + L + CS    S        Q   L  L+G  +TA    + 
Sbjct: 41  CACSYDDDYG--------EELSVFCSARNLSSPPEGVPCQARALW-LDGNNLTALPAAAF 91

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
             L  L +LNL   +L     + F  +  L  L+L  N++            NL SL+L 
Sbjct: 92  GNLSGLDFLNLQGSRLGQLEAQAFRGLARLAHLHLERNQLRGLAPGTFLHTPNLASLSLA 151

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGS------SGLRHL------------------ 223
           +  +G        GLC L  L L    +         GL HL                  
Sbjct: 152 NNRLGQLEGAAFAGLCQLGELNLGWNTLAVLPDAVFRGLPHLRELVLAGNRLAYLQPPLF 211

Query: 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
           +GL  L+ ++LS   +        AGL  L+ L L   Q++     A   L  L  LDL 
Sbjct: 212 AGLGELQELDLSTNSLRSVKAHVFAGLPRLQKLFLRGNQLSAVAPRAFLGLRALRWLDLS 271

Query: 284 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
             R+            +L  L +    +T    +  +DL  L  L L+ N  L       
Sbjct: 272 HNRLAVLFEDTFLGLPSLHVLRLSANVITSLRPQAFRDLPHLEELQLAHN-RLGALAAGA 330

Query: 344 ISGLTGLVSLNVSNSRITSAG 364
             GL  L  L ++++ I   G
Sbjct: 331 FEGLARLEVLALNDNHIREIG 351


>gi|320168280|gb|EFW45179.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 769

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 166/392 (42%), Gaps = 7/392 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLES 62
            +GLS LT L  + N  IT     AF GL +L +L L   + T I        GL  L  
Sbjct: 100 FAGLSALTLLDLKGNQ-ITTIPENAFTGLASLQQLWLYTNQITSISANA--FAGLSALTQ 156

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L + + N + +      +GLT L S+Q+  +++T        G+  LT L L+   +T+ 
Sbjct: 157 LWM-YSNPLPNITANAFAGLTALNSMQLDRNQLTSIVANAFAGMPALTDLELQNNAITSI 215

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
              + + L +L YLN+ +  ++      F+ + +L  L L  N IT        GLT L 
Sbjct: 216 SPSAFAGLTALTYLNMVQNHITGISANSFTGLSALNELYLSQNSITVISSNAFNGLTALS 275

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SL L S  I        T L  L  L L    + S      + L  L S+ L    I+  
Sbjct: 276 SLYLPSNQITSISANVFTNLPALSSLRLQSNSITSISSNAFTNLPALSSLRLKSNSITSI 335

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           S      L +L +L+L   +IT   + A T+L GLT L L+  +IT   A        L 
Sbjct: 336 SSNAFTNLPALSALDLSDNEITVIPVNAFTNLPGLTDLKLYANKITTIFANAFSGLSVLD 395

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SL++ G  +T      I  L++L  L L++N  +T+      + LT L  L +  +++ S
Sbjct: 396 SLDLSGNLITVIPANAIASLTALNFLYLNEN-QITNIPANAFASLTALTGLFLQQNQLAS 454

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
                   L  L  L L    +T   +    +
Sbjct: 455 IDANAFAGLTALIDLDLREASITVMPVNAFTA 486



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 161/381 (42%), Gaps = 4/381 (1%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLN 64
           SG+   T   F  +N IT+    AFA L  L  L L    +I G   N   GL  L  L+
Sbjct: 52  SGIPATTVTLFLSSNPITSIPANAFATLTALESLRLYN-NQITGLSANAFAGLSALTLLD 110

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +K  N IT       +GL +L+ L +  +++T        GL  LT L +   P+     
Sbjct: 111 LKG-NQITTIPENAFTGLASLQQLWLYTNQITSISANAFAGLSALTQLWMYSNPLPNITA 169

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           ++ + L +L  + L+R QL+      F+ + +L  L L  N IT        GLT L  L
Sbjct: 170 NAFAGLTALNSMQLDRNQLTSIVANAFAGMPALTDLELQNNAITSISPSAFAGLTALTYL 229

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           N+    I      + TGL  L  L LS   +        +GLT L S+ L    I+  S 
Sbjct: 230 NMVQNHITGISANSFTGLSALNELYLSQNSITVISSNAFNGLTALSSLYLPSNQITSISA 289

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
                L +L SL L +  IT     A T+L  L+ L L    IT   +    N   L +L
Sbjct: 290 NVFTNLPALSSLRLQSNSITSISSNAFTNLPALSSLRLKSNSITSISSNAFTNLPALSAL 349

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           ++    +T   V    +L  LT L L  N  +T       SGL+ L SL++S + IT   
Sbjct: 350 DLSDNEITVIPVNAFTNLPGLTDLKLYAN-KITTIFANAFSGLSVLDSLDLSGNLITVIP 408

Query: 365 LRHLKPLKNLRSLTLESCKVT 385
              +  L  L  L L   ++T
Sbjct: 409 ANAIASLTALNFLYLNENQIT 429



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 162/359 (45%), Gaps = 29/359 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESL 63
            +G+  LT L  + NNAIT+    AFAGL  L  L++ +   I G   N   GL  L  L
Sbjct: 196 FAGMPALTDLELQ-NNAITSISPSAFAGLTALTYLNMVQ-NHITGISANSFTGLSALNEL 253

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
            +   N IT       +GLT L SL +  +++T         L  L+ L L+   +T+  
Sbjct: 254 YLSQ-NSITVISSNAFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQSNSITSIS 312

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
            ++ + L +L  L L    ++      F+ + +L  L+L  NEIT   ++ +   TNL  
Sbjct: 313 SNAFTNLPALSSLRLKSNSITSISSNAFTNLPALSALDLSDNEIT---VIPVNAFTNLP- 368

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
                            GL +LK   L   ++ +      SGL+ L+S++LS   I+   
Sbjct: 369 -----------------GLTDLK---LYANKITTIFANAFSGLSVLDSLDLSGNLITVIP 408

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
              +A L++L  L L+  QIT+    A  SLT LT L L   ++    A        L  
Sbjct: 409 ANAIASLTALNFLYLNENQITNIPANAFASLTALTGLFLQQNQLASIDANAFAGLTALID 468

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           L++    +T   V     L++LT L LS N  +T  +  + + LT L  L++S ++ITS
Sbjct: 469 LDLREASITVMPVNAFTALTALTSLYLSLN-QITTISANVFASLTALNYLDLSANQITS 526



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 148/356 (41%), Gaps = 28/356 (7%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N IT       + LT L+SL++  +++T        GL  LTLL+L+G  +T    ++ +
Sbjct: 66  NPITSIPANAFATLTALESLRLYNNQITGLSANAFAGLSALTLLDLKGNQITTIPENAFT 125

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L SL  L L   Q++      F+ + +L  L +  N + +       GLT L S+ LD 
Sbjct: 126 GLASLQQLWLYTNQITSISANAFAGLSALTQLWMYSNPLPNITANAFAGLTALNSMQLDR 185

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL---SFTGISDGSLR 245
             +         G+  L  LEL +  + S      +GLT L  +N+     TGIS  S  
Sbjct: 186 NQLTSIVANAFAGMPALTDLELQNNAITSISPSAFAGLTALTYLNMVQNHITGISANSFT 245

Query: 246 KLA---------------------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
            L+                     GL++L SL L + QIT       T+L  L+ L L  
Sbjct: 246 GLSALNELYLSQNSITVISSNAFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQS 305

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             IT   +    N   L SL +    +T        +L +L+ L+LS N  +T   +   
Sbjct: 306 NSITSISSNAFTNLPALSSLRLKSNSITSISSNAFTNLPALSALDLSDN-EITVIPVNAF 364

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT---ANDIKRLQSRDL 397
           + L GL  L +  ++IT+        L  L SL L    +T   AN I  L + + 
Sbjct: 365 TNLPGLTDLKLYANKITTIFANAFSGLSVLDSLDLSGNLITVIPANAIASLTALNF 420



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 103/245 (42%), Gaps = 3/245 (1%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L L  N IT         LT LESL L +  I         GL  L  L+L   Q+ +  
Sbjct: 61  LFLSSNPITSIPANAFATLTALESLRLYNNQITGLSANAFAGLSALTLLDLKGNQITTIP 120

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
               +GL +L+ + L    I+  S    AGLS+L  L + +  + +    A   LT L  
Sbjct: 121 ENAFTGLASLQQLWLYTNQITSISANAFAGLSALTQLWMYSNPLPNITANAFAGLTALNS 180

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           + L   ++T   A        L  LE+    +T         L++LT LN+ QN ++T  
Sbjct: 181 MQLDRNQLTSIVANAFAGMPALTDLELQNNAITSISPSAFAGLTALTYLNMVQN-HITGI 239

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
           +    +GL+ L  L +S + IT         L  L SL L S ++T+  I      +LP 
Sbjct: 240 SANSFTGLSALNELYLSQNSITVISSNAFNGLTALSSLYLPSNQITS--ISANVFTNLPA 297

Query: 400 LVSFR 404
           L S R
Sbjct: 298 LSSLR 302


>gi|215769345|dbj|BAH01574.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 483

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 166/385 (43%), Gaps = 60/385 (15%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L+ L++  C+ I+D+ +K ++ + +L+ L +S + +TD+G+  +  L  L LL+L G   
Sbjct: 4   LKELDLSRCSKISDAGIKHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRF 63

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT----------- 168
           T   L SL  L  L +L++   +++++G        SL  LN+ +  +T           
Sbjct: 64  TDKALRSLQVLTQLEHLDIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPILPTLRCL 123

Query: 169 --DECLVH------LKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 218
               C +H       + L +LE L + +   G  DE   ++    +L  L++S     SS
Sbjct: 124 NMSNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILP-SSLTYLDMSS--CSSS 180

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTG 276
            L  L  + NLE ++LS++ I   ++  +A +  +LK L+L   ++T   L  L  ++  
Sbjct: 181 NLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAGTVPS 240

Query: 277 LTHLDLFGARITDSGAAY---------------------------------LRNFKNLRS 303
           LT L L   +I DS   Y                                 L   K L S
Sbjct: 241 LTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELKYLES 300

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           L +    L D  +  +  L +L  L L  +  L+D  L  +S  + L+ L    + +++ 
Sbjct: 301 LNLNNTQLMDDVIPPLASLRALKYLFLKSDF-LSDPALHALSSASNLIHLGFCGNILSTT 359

Query: 364 GLRHLKPLKNLRSLTLESCKVTAND 388
           GLR   P   LR L L  C +   D
Sbjct: 360 GLRKFVPPATLRMLDLSGCWILTGD 384



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 159/346 (45%), Gaps = 44/346 (12%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           +T  G+ A + LINL  LDL         L +L+ L +LE L+I W + IT+     L  
Sbjct: 39  LTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIA 97

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC-------------LDSLS 128
            T+L  L IS ++VT      L  L  L  LN+  C + + C             + S +
Sbjct: 98  FTSLSFLNISWTRVT-----CLPILPTLRCLNMSNCTIHSICNGEFQVLIHLEKLIISAA 152

Query: 129 ALG------------SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
           + G            SL YL+++ C  S         + +L+ L+L ++ I  + + ++ 
Sbjct: 153 SFGNIDEVFSSILPSSLTYLDMSSC--SSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIA 210

Query: 177 GL-TNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
            +  NL+ L+L +  +  + L  L G + +L  L L+ T++  S L ++S + +L  +NL
Sbjct: 211 NIGMNLKFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSALLYISMMPSLRILNL 270

Query: 235 SFTGISDG---------SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           S T I            SL  L  L  L+SLNL+  Q+ D  +  L SL  L +L L   
Sbjct: 271 SRTCIKGFMMENSVKVLSLSALEELKYLESLNLNNTQLMDDVIPPLASLRALKYLFLKSD 330

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
            ++D     L +  NL  L  CG  L+  G++     ++L +L+LS
Sbjct: 331 FLSDPALHALSSASNLIHLGFCGNILSTTGLRKFVPPATLRMLDLS 376


>gi|290987592|ref|XP_002676506.1| predicted protein [Naegleria gruberi]
 gi|284090109|gb|EFC43762.1| predicted protein [Naegleria gruberi]
          Length = 259

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 123/256 (48%), Gaps = 8/256 (3%)

Query: 82  LTNLKSLQISCSKVT----DSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           L N+ +L+ +CS+      DSGI   +K L KL +         A C   +  L SL   
Sbjct: 6   LPNIVTLEWTCSRYQKFTFDSGIFGTMKQLTKLKIGENNIGDQNAKCFIEMKQLTSL--- 62

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           ++    +S +G +   ++  L  LN+  N + +    ++  L  L +LN+    IG++G 
Sbjct: 63  DVYHNNISKEGAKFIGEMTQLTYLNVNTNNVGELGAKYISKLNQLITLNIGLNSIGEQGA 122

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
             ++ +  L  L +    +G+ G  H+S +  L S+N    G+ D  ++ ++ L+ L  L
Sbjct: 123 EYISEMKQLTDLNIYSCNIGNRGANHISRMKQLISLNTGRNGLDDEGVKYISELNQLNFL 182

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
           N+    I++ GL  ++ +  + HLD+    I D GA  +   K L  L+I    + + G 
Sbjct: 183 NIADSNISEEGLNYISGMKQIIHLDISNNFIDDEGAEIISRMKQLTRLDISNNSIGEEGT 242

Query: 317 KHIKDLSSLTLLNLSQ 332
           K+I ++  LT L++ +
Sbjct: 243 KYISEMKKLTYLDIGE 258



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 101/202 (50%), Gaps = 1/202 (0%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L  L +    IGD+       +  L  L++    +   G + +  +T L  +N++  
Sbjct: 32  MKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTN 91

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            + +   + ++ L+ L +LN+    I + G   ++ +  LT L+++   I + GA ++  
Sbjct: 92  NVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANHISR 151

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
            K L SL     GL D GVK+I +L+ L  LN++ + N++++ L  ISG+  ++ L++SN
Sbjct: 152 MKQLISLNTGRNGLDDEGVKYISELNQLNFLNIA-DSNISEEGLNYISGMKQIIHLDISN 210

Query: 358 SRITSAGLRHLKPLKNLRSLTL 379
           + I   G   +  +K L  L +
Sbjct: 211 NFIDDEGAEIISRMKQLTRLDI 232



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 100/214 (46%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I D + K    +  L SL +  + ++  G  ++  + +LT LN+    V       +S
Sbjct: 43  NNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTNNVGELGAKYIS 102

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L  L  LN+    + + G E  S++  L  LN+    I +    H+  +  L SLN   
Sbjct: 103 KLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANHISRMKQLISLNTGR 162

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
            G+ DEG+  ++ L  L  L ++D+ +   GL ++SG+  +  +++S   I D     ++
Sbjct: 163 NGLDDEGVKYISELNQLNFLNIADSNISEEGLNYISGMKQIIHLDISNNFIDDEGAEIIS 222

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
            +  L  L++    I + G   ++ +  LT+LD+
Sbjct: 223 RMKQLTRLDISNNSIGEEGTKYISEMKKLTYLDI 256



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 1/147 (0%)

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           I D + +    +  L SL++    I+  G   +  +T LT+L++    + + GA Y+   
Sbjct: 45  IGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTNNVGELGAKYISKL 104

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
             L +L I    + + G ++I ++  LT LN+  +CN+ ++    IS +  L+SLN   +
Sbjct: 105 NQLITLNIGLNSIGEQGAEYISEMKQLTDLNIY-SCNIGNRGANHISRMKQLISLNTGRN 163

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVT 385
            +   G++++  L  L  L +    ++
Sbjct: 164 GLDDEGVKYISELNQLNFLNIADSNIS 190



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 6/133 (4%)

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 324
           D+G+    ++  LT L +    I D  A      K L SL++    ++  G K I +++ 
Sbjct: 25  DSGI--FGTMKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQ 82

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           LT LN++ N N+ +   + IS L  L++LN+  + I   G  ++  +K L  L + SC +
Sbjct: 83  LTYLNVNTN-NVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNI 141

Query: 385 ---TANDIKRLQS 394
               AN I R++ 
Sbjct: 142 GNRGANHISRMKQ 154


>gi|290972751|ref|XP_002669114.1| predicted protein [Naegleria gruberi]
 gi|284082657|gb|EFC36370.1| predicted protein [Naegleria gruberi]
          Length = 259

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 112/223 (50%), Gaps = 1/223 (0%)

Query: 157 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
           +  L + +N I  E  +H+  +  L +L++ +  + +EG   ++ L  LKCL++    +G
Sbjct: 34  ITTLTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDIGSNSIG 93

Query: 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276
            +G +++SG+  L  +++    I +   + ++ +  L  L +    I   G   ++ L  
Sbjct: 94  KNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRK 153

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           LTHLD+    I   G+ Y+     L  L I    + + GVKHI +++ LT L++  N  +
Sbjct: 154 LTHLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDIGDN-EI 212

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           + + ++ ISG+  L +L++S + I   G + L  +K L  L  
Sbjct: 213 SAEGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEF 255



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 114/205 (55%), Gaps = 4/205 (1%)

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +KG+T L ++N +S G+  EG ++++ +  L  L++ ++ +   G +++S L  L+ +++
Sbjct: 31  MKGITTL-TINYNSIGV--EGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDI 87

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
               I     + ++G+  L  L++    I + G  +++ +  LTHL +    I   GA Y
Sbjct: 88  GSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKY 147

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           +   + L  L+I    +   G K+I +++ LT+LN+  N ++ ++ ++ IS +  L  L+
Sbjct: 148 ISQLRKLTHLDISSNDIGAKGSKYISEMNQLTILNIYNN-DIGNEGVKHISEMNQLTRLD 206

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTL 379
           + ++ I++ G++++  +K L +L +
Sbjct: 207 IGDNEISAEGVKYISGMKQLTNLDI 231



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 132/251 (52%), Gaps = 13/251 (5%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM---KLESL- 63
           L N+T+L F+R   I A   K    L+NL+K  +   T I+   + ++G M   K+E L 
Sbjct: 8   LQNVTNLLFKR--EIGAFDYK----LLNLMK-GITTLT-INYNSIGVEGAMHISKMEQLT 59

Query: 64  NIKWCNCI-TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           N+  CN +  +   K +S L  LK L I  + +  +G  Y+ G+++LT L++    +   
Sbjct: 60  NLDICNSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICEE 119

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
              S+S +  L +L +    +  +G +  S++  L  L++  N+I  +   ++  +  L 
Sbjct: 120 GAKSISEMKQLTHLKITFNDIGTEGAKYISQLRKLTHLDISSNDIGAKGSKYISEMNQLT 179

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            LN+ +  IG+EG+ +++ +  L  L++ D ++ + G++++SG+  L ++++S+  I D 
Sbjct: 180 ILNIYNNDIGNEGVKHISEMNQLTRLDIGDNEISAEGVKYISGMKQLTNLDISWNNIGDE 239

Query: 243 SLRKLAGLSSL 253
             + L+ +  L
Sbjct: 240 GAQFLSQMKQL 250



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L+ +TNL  L     G  D  L+NL  +  +  L ++   +G  G  H+S +  L ++++
Sbjct: 8   LQNVTNL--LFKREIGAFDYKLLNL--MKGITTLTINYNSIGVEGAMHISKMEQLTNLDI 63

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
             + + +   + ++ L  LK L++ +  I   G   ++ +  LT LD+F   I + GA  
Sbjct: 64  CNSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKS 123

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           +   K L  L+I    +   G K+I  L  LT L++S N ++  K  + IS +  L  LN
Sbjct: 124 ISEMKQLTHLKITFNDIGTEGAKYISQLRKLTHLDISSN-DIGAKGSKYISEMNQLTILN 182

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 400
           + N+ I + G++H+  +  L  L +   +++A  +K +   + L NL
Sbjct: 183 IYNNDIGNEGVKHISEMNQLTRLDIGDNEISAEGVKYISGMKQLTNL 229



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 110/228 (48%), Gaps = 3/228 (1%)

Query: 103 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162
           +KG+  LT+ N     V  A    +S +  L  L++    L ++G +  S++  LK L++
Sbjct: 31  MKGITTLTI-NYNSIGVEGAM--HISKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDI 87

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
           G N I      ++ G+  L  L++ +  I +EG  +++ +  L  L+++   +G+ G ++
Sbjct: 88  GSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKY 147

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           +S L  L  +++S   I     + ++ ++ L  LN+    I + G+  ++ +  LT LD+
Sbjct: 148 ISQLRKLTHLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDI 207

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
               I+  G  Y+   K L +L+I    + D G + +  +  L  L  
Sbjct: 208 GDNEISAEGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEF 255



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           ++S +  LT+L    N+ +  +G K  + L  L  LD+   +    G   + G+ +L  L
Sbjct: 51  HISKMEQLTNLDIC-NSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQLTRL 109

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           +I + N I +   K +S +  L  L+I+ + +   G  Y+  L+KLT L++    + A  
Sbjct: 110 DI-FNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRKLTHLDISSNDIGAKG 168

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
              +S +  L  LN+    + ++G +  S++  L  L++G NEI+ E + ++ G+  L +
Sbjct: 169 SKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDIGDNEISAEGVKYISGMKQLTN 228

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLEL 210
           L++    IGDEG   L+ +  L  LE 
Sbjct: 229 LDISWNNIGDEGAQFLSQMKQLIYLEF 255



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 111/233 (47%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           D K L+ +  + +L I+ + +   G  ++  +++LT L++    +       +S L  L 
Sbjct: 24  DYKLLNLMKGITTLTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLK 83

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
            L++    +  +G +  S +  L  L++  N I +E    +  +  L  L +    IG E
Sbjct: 84  CLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTE 143

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           G   ++ L  L  L++S   +G+ G +++S +  L  +N+    I +  ++ ++ ++ L 
Sbjct: 144 GAKYISQLRKLTHLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLT 203

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
            L++   +I+  G+  ++ +  LT+LD+    I D GA +L   K L  LE  
Sbjct: 204 RLDIGDNEISAEGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEFI 256


>gi|363728137|ref|XP_003640464.1| PREDICTED: F-box/LRR-repeat protein 14 [Gallus gallus]
          Length = 399

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/273 (35%), Positives = 152/273 (55%), Gaps = 24/273 (8%)

Query: 142 QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLV 197
           Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + D G+ 
Sbjct: 128 QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIG 187

Query: 198 NLTGLCN--------LKCLELSDTQVGSS-GLRHLS-GLTNLESINLSFTG-ISDGSLRK 246
           +L G+          L+ L L D Q  S   L+HL+ GL  L  +NLSF G ISD  L  
Sbjct: 188 HLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLH 247

Query: 247 LAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNL 301
           L+ +SSL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +    L
Sbjct: 248 LSHMSSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGL 306

Query: 302 RSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-S 358
           RSL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++   +
Sbjct: 307 RSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT 366

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 367 RITKRGLERITQLPCLKVLNLGLWEMTESEKVR 399



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 148/305 (48%), Gaps = 54/305 (17%)

Query: 54  LKGLMKLESLNIK---------------------------WCNCITDSDMKPLSGLTNLK 86
           ++G+  +ESLN+                             C  ITDS +  ++    LK
Sbjct: 85  IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA--QYLK 142

Query: 87  SLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTA-------ACLDSLSALG--S 132
            L++     CS +T++G+  +  GLQ+L  LNL  C   +       A +   +A G   
Sbjct: 143 GLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 202

Query: 133 LFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 189
           L  L L  CQ LSD   +  ++ +G L+ LNL F   I+D  L+HL  +++L SLNL SC
Sbjct: 203 LEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSC 262

Query: 190 -GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL- 244
             I D G+++L  G   L  L++S   +VG   L +++ GL  L S++L    ISD  + 
Sbjct: 263 DNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGIN 322

Query: 245 RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNL 301
           R +  +  L++LN+    +ITD GL  +   L+ LT +DL+G  RIT  G   +     L
Sbjct: 323 RMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCL 382

Query: 302 RSLEI 306
           + L +
Sbjct: 383 KVLNL 387



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 126/246 (51%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ ++ESLNL  C      G+G   +  ++ L +L    C +++D+ +G    ++L G
Sbjct: 85  IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA-QYLKG 143

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 144 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 199

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    +++D    +L R    LR L +  CGG ++DAG+ H+  +SSL  LN
Sbjct: 200 CLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGG-ISDAGLLHLSHMSSLRSLN 258

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  LRSL+L SC ++ 
Sbjct: 259 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISD 318

Query: 387 NDIKRL 392
             I R+
Sbjct: 319 EGINRM 324



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 117/222 (52%), Gaps = 18/222 (8%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C ++    L +L +G
Sbjct: 166 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARG 225

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L +L  LN+ +C  I+D+ +  LS +++L+SL + SC  ++D+GI +L  G  +L+ L++
Sbjct: 226 LGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDV 285

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNEITDE 170
             C  V    L  ++  L  L  L+L  C +SD+G  +   ++  L+ LN+G    ITD+
Sbjct: 286 SFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDK 345

Query: 171 CLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL 210
            L  + + L+ L  ++L  C  I   GL  +T L  LK L L
Sbjct: 346 GLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNL 387



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 7/170 (4%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLN 64
           GL  L  L+      I+  G+   + + +L  L+L  C  I   G+++L  G ++L  L+
Sbjct: 225 GLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 284

Query: 65  IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTA 121
           + +C+ + D  +  ++ GL  L+SL +    ++D GI   ++ +  L  LN+  C  +T 
Sbjct: 285 VSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITD 344

Query: 122 ACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 169
             L+ ++  L  L  ++L  C +++  G E+ +++  LKVLNLG  E+T+
Sbjct: 345 KGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWEMTE 394


>gi|224144082|ref|XP_002325179.1| predicted protein [Populus trichocarpa]
 gi|222866613|gb|EEF03744.1| predicted protein [Populus trichocarpa]
          Length = 66

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/58 (77%), Positives = 52/58 (89%)

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
           +GLT LVSLNVSNS IT  GLR+LKPLKNLRS++LESCKVTA+ IK+LQS +LPNLVS
Sbjct: 9   TGLTELVSLNVSNSLITIDGLRYLKPLKNLRSVSLESCKVTASGIKKLQSTELPNLVS 66



 Score = 38.5 bits (88), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
           +GLT L SL +S S +T  G+ YLK L+ L  ++LE C VTA+ +  L +
Sbjct: 9   TGLTELVSLNVSNSLITIDGLRYLKPLKNLRSVSLESCKVTASGIKKLQS 58


>gi|421610748|ref|ZP_16051914.1| leucine-rich repeat domain protein [Rhodopirellula baltica SH28]
 gi|408498532|gb|EKK03025.1| leucine-rich repeat domain protein [Rhodopirellula baltica SH28]
          Length = 341

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 2/249 (0%)

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           D  +K LS  + +  L +  +  +D  +  L  L  L  L + G     A   S+S L +
Sbjct: 83  DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  +      ++DDG    +++  L+ ++L  + +TD+ L  +  L  L  LNL    I 
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT 202

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
            E    ++ L  L+ LEL++T  G  G+  ++ +  LE INL  T I + SL+   G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261

Query: 253 LKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           L  LN+D    IT+  +  + SL  L  L L    ++      L+  + L +L +   GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321

Query: 312 TDAGVKHIK 320
            +   K ++
Sbjct: 322 EEEPAKELE 330



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
           G ++ L  L  L+ L + +     D+  K +SGL  L ++    + VTD G + L  L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 153
           L  ++L   PVT   L S+S L  L  LNL   +++ +  E  SK               
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226

Query: 154 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 204
                   I  L+ +NL   +I +E L   +G T+L  LN+D+C  I +E +  +  L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPH 286

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           LK L L  T V    L  L  L  LE++ ++  G+ +   ++L  +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)

Query: 133 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
           +  ++L     SD DG  K  S   ++  L +     +D  ++ L  L NL+ L +    
Sbjct: 69  VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
             D    +++GL  L  +   DT V   G   L+ L  L+ ++L  + ++D +L  ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
             L  LNL   +IT      ++ L  L  L+L        G   + N + L  + +    
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           + +  +K  +  +SLT+LN+     +T++ + +I  L  L  L++  + ++   L  LKP
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307

Query: 371 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           L+ L +L + +  +     K L++   PNL  F 
Sbjct: 308 LQELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340


>gi|32477277|ref|NP_870271.1| G protein-coupled receptor LGR4 [Rhodopirellula baltica SH 1]
 gi|32447828|emb|CAD77346.1| probable G protein-coupled receptor LGR4 [Rhodopirellula baltica SH
           1]
          Length = 341

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 2/249 (0%)

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           D  +K LS  + +  L +  +  +D  +  L  L  L  L + G     A   S+S L +
Sbjct: 83  DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  +      ++DDG    +++  L+ ++L  + +TD+ L  +  L  L  LNL    I 
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMKSPVTDKTLTSISTLPKLTKLNLRGTKIT 202

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
            E    ++ L  L+ LEL++T  G  G+  ++ +  LE INL  T I + SL+   G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261

Query: 253 LKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           L  LN+D    IT+  +  + SL  L  L L    ++      L+  + L +L +   GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321

Query: 312 TDAGVKHIK 320
            +   K ++
Sbjct: 322 EEEPAKELE 330



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
           G ++ L  L  L+ L + +     D+  K +SGL  L ++    + VTD G + L  L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 153
           L  ++L   PVT   L S+S L  L  LNL   +++ +  E  SK               
Sbjct: 167 LQDVSLMKSPVTDKTLTSISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226

Query: 154 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 204
                   I  L+ +NL   +I +E L   +G T+L  LN+D+C  I +E +  +  L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPH 286

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           LK L L  T V    L  L  L  LE++ ++  G+ +   ++L  +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)

Query: 133 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
           +  ++L     SD DG  K  S   ++  L +     +D  ++ L  L NL+ L +    
Sbjct: 69  VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
             D    +++GL  L  +   DT V   G   L+ L  L+ ++L  + ++D +L  ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMKSPVTDKTLTSISTL 188

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
             L  LNL   +IT      ++ L  L  L+L        G   + N + L  + +    
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           + +  +K  +  +SLT+LN+     +T++ + +I  L  L  L++  + ++   L  LKP
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307

Query: 371 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           L+ L +L + +  +     K L++   PNL  F 
Sbjct: 308 LQELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340


>gi|421888174|ref|ZP_16319282.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
           solanacearum K60-1]
 gi|378966463|emb|CCF96030.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
           solanacearum K60-1]
          Length = 468

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 166/359 (46%), Gaps = 9/359 (2%)

Query: 25  QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE------SLNIKWCNCITDSDMKP 78
           +G    AG+ +L +L L R   ++G  + L G  +L       +L++  C  I   + + 
Sbjct: 85  RGGITAAGIAHLNRLPLVRLN-LNGNRIGLAGAQRLANHPTLTALDVGRCR-IGPEEARE 142

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L+    L +L +S +++   G+  L   + LT L++    +  A    L A   L  LN+
Sbjct: 143 LAASARLTTLNVSRNRIGGEGVRALADCKTLTSLDVSENGLGDAEAQRLGASERLTTLNV 202

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           NR ++   G    +   +L  L++G N I DE +  L     L +LN++  G+G  G+  
Sbjct: 203 NRNRIDVPGARALAACKTLTSLDIGGNSIGDEGVDALVANAQLTTLNVERAGVGAHGVQA 262

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L     L  L +    +G  G   L+   +L +++    GI     + LA  + L +LNL
Sbjct: 263 LADCKTLTSLRIDSNNIGDEGANTLAASISLTTLHSEGNGIGLAGAKALAANTMLTTLNL 322

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
               + D G  AL + T L  L +    ++D+GA  L   + L +L+I    + DAG + 
Sbjct: 323 GHNSVGDAGAQALFANTTLVWLSVRRNGLSDAGAIRLAASRTLTTLDIGDNAIKDAGARA 382

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
           +    +LT LN+S N  + +     ++    L SL++ N+R+   G+R L   + L SL
Sbjct: 383 LAANRTLTTLNVSSN-EIGNAGARALAANARLKSLDLRNNRMLEGGVRALLANRTLSSL 440



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 148/329 (44%), Gaps = 11/329 (3%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
            TD+D+K L     LK L +S  +  +T +GIA+L  L  L  LNL G  +  A    L+
Sbjct: 64  FTDADLKGLP--PTLKELDLSRCRGGITAAGIAHLNRL-PLVRLNLNGNRIGLAGAQRLA 120

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
              +L  L++ RC++  +   + +    L  LN+  N I  E +  L     L SL++  
Sbjct: 121 NHPTLTALDVGRCRIGPEEARELAASARLTTLNVSRNRIGGEGVRALADCKTLTSLDVSE 180

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
            G+GD     L     L  L ++  ++   G R L+    L S+++    I D  +  L 
Sbjct: 181 NGLGDAEAQRLGASERLTTLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDEGVDALV 240

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
             + L +LN++   +   G+ AL     LT L +    I D GA  L    +L +L   G
Sbjct: 241 ANAQLTTLNVERAGVGAHGVQALADCKTLTSLRIDSNNIGDEGANTLAASISLTTLHSEG 300

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
            G+  AG K +   + LT LNL  N ++ D   + +   T LV L+V  + ++ AG   L
Sbjct: 301 NGIGLAGAKALAANTMLTTLNLGHN-SVGDAGAQALFANTTLVWLSVRRNGLSDAGAIRL 359

Query: 369 KPLKNLRSLTLESCKVTANDIKRLQSRDL 397
                  S TL +  +  N IK   +R L
Sbjct: 360 AA-----SRTLTTLDIGDNAIKDAGARAL 383



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 102/232 (43%), Gaps = 2/232 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+    LTSL     N+I  +G+ A      L  L++ER      G+  L     L SL 
Sbjct: 215 LAACKTLTSLDIG-GNSIGDEGVDALVANAQLTTLNVERAGVGAHGVQALADCKTLTSLR 273

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I D     L+   +L +L    + +  +G   L     LT LNL    V  A  
Sbjct: 274 ID-SNNIGDEGANTLAASISLTTLHSEGNGIGLAGAKALAANTMLTTLNLGHNSVGDAGA 332

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            +L A  +L +L++ R  LSD G  + +   +L  L++G N I D     L     L +L
Sbjct: 333 QALFANTTLVWLSVRRNGLSDAGAIRLAASRTLTTLDIGDNAIKDAGARALAANRTLTTL 392

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
           N+ S  IG+ G   L     LK L+L + ++   G+R L     L S+ +SF
Sbjct: 393 NVSSNEIGNAGARALAANARLKSLDLRNNRMLEGGVRALLANRTLSSLGVSF 444


>gi|302754944|ref|XP_002960896.1| hypothetical protein SELMODRAFT_75506 [Selaginella moellendorffii]
 gi|300171835|gb|EFJ38435.1| hypothetical protein SELMODRAFT_75506 [Selaginella moellendorffii]
          Length = 637

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 133/429 (31%), Positives = 197/429 (45%), Gaps = 64/429 (14%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLK-GLMKLESLNIK 66
           S L  L  R  N++    + A   L NL KLDL  C  I   GL  L  G  KL+ + +K
Sbjct: 118 SALVELDLRCCNSLGDLELAAVCQLGNLRKLDLTGCYMISDAGLGCLAAGCKKLQVVVLK 177

Query: 67  WCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACL 124
            C  I+D+ +  L S    L ++ +S +++TD G+  L  L  L +LNL  C  V  A L
Sbjct: 178 GCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGL 237

Query: 125 DSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-------NEITDECLVHLK 176
              S   SL  L+L+ C+ +++ G    SK  SL+ L LGF       ++IT + L  + 
Sbjct: 238 TRTST--SLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFCSPVKKRSQITGQLLEAVG 294

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---------TQVGSSGLRHLSGLT 227
            LT +++L L  C I  +GL    G C   CL+LSD         T  G + + H  G  
Sbjct: 295 KLTQIQTLKLAGCEIAGDGL-RFVGSC---CLQLSDLSLSKCRGVTDSGMASIFH--GCK 348

Query: 228 NLESINLS----FTGISDGSL-RKLAGLSSLK-----------------------SLNLD 259
           NL  ++L+     T I+  ++ R  AGL SLK                        L++ 
Sbjct: 349 NLRKLDLTCCLDLTEITACNIARSSAGLVSLKIEACRILTENNIPLLMERCSCLEELDVT 408

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGVK 317
              I D GL  +     L  L L   +++D+G  ++ RN  +L  L++   G + DAGV 
Sbjct: 409 DCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDAGVA 468

Query: 318 HIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLR 375
            I      L +LNLS   N+TD ++  IS L+ L  L +   +    GL + L   KNL 
Sbjct: 469 SIAAGCRKLRILNLSYCPNITDASIVSISQLSHLQQLEIRGCK--GVGLEKKLPEFKNLV 526

Query: 376 SLTLESCKV 384
            L L+ C +
Sbjct: 527 ELDLKHCGI 535



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 144/312 (46%), Gaps = 32/312 (10%)

Query: 16  FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITD 73
            ++ + IT Q ++A   L  +  L L  C  I G  +   G   ++L  L++  C  +TD
Sbjct: 279 VKKRSQITGQLLEAVGKLTQIQTLKLAGC-EIAGDGLRFVGSCCLQLSDLSLSKCRGVTD 337

Query: 74  SDMKPL-SGLTNLKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           S M  +  G  NL+ L ++C    +++T   IA  +    L  L +E C +     +++ 
Sbjct: 338 SGMASIFHGCKNLRKLDLTCCLDLTEITACNIA--RSSAGLVSLKIEACRILTE--NNIP 393

Query: 129 AL----GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLES 183
            L      L  L++  C + D G E  +K   LK L LGF +++D  + H+ +  ++L  
Sbjct: 394 LLMERCSCLEELDVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIE 453

Query: 184 LNLDSCG-IGDEGLVNLTGLC------NLK-CLELSDTQVGSSGLRHLSGLTNLESINLS 235
           L+L   G +GD G+ ++   C      NL  C  ++D  + S  +  LS L  LE     
Sbjct: 454 LDLYRSGNVGDAGVASIAAGCRKLRILNLSYCPNITDASIVS--ISQLSHLQQLEIRGCK 511

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAY 294
             G+     +KL    +L  L+L    I D G+ ++      L  L+L   RI+++    
Sbjct: 512 GVGLE----KKLPEFKNLVELDLKHCGIGDRGMTSIVHCFPNLQQLNLSYCRISNAALVM 567

Query: 295 LRNFKNLRSLEI 306
           L N + L+++++
Sbjct: 568 LGNLRCLQNVKL 579



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 181/401 (45%), Gaps = 70/401 (17%)

Query: 60  LESLNIKWCNCITDSDMKPLSGL--TNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLE 115
           +ESL++  C  ITD D+  +  L  T L+SL ++     T +GI  L +    L  L+L 
Sbjct: 67  IESLDLSSCIKITDEDLALVGELAGTRLRSLGLARMGGFTVAGIVALARDCSALVELDLR 126

Query: 116 GC------PVTAACLDSLSALGSLFYLNLNRCQLSDD--------GCEKF---------- 151
            C       + A C      LG+L  L+L  C +  D        GC+K           
Sbjct: 127 CCNSLGDLELAAVC-----QLGNLRKLDLTGCYMISDAGLGCLAAGCKKLQVVVLKGCVG 181

Query: 152 ----------SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGL---- 196
                     S    L  +++ + EITD+ +  L  L +L  LNL +C  +GD GL    
Sbjct: 182 ISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTS 241

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-------TGISDGSLRKLAG 249
            +L  L +L C   S T VG S L   S    L+ + L F       + I+   L  +  
Sbjct: 242 TSLLEL-DLSCCR-SVTNVGISFLSKRS----LQFLKLGFCSPVKKRSQITGQLLEAVGK 295

Query: 250 LSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGAR-ITDSG-AAYLRNFKNLRSLEI 306
           L+ +++L L   +I   GL  + S    L+ L L   R +TDSG A+     KNLR L++
Sbjct: 296 LTQIQTLKLAGCEIAGDGLRFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKNLRKLDL 355

Query: 307 -CGGGLTDAGVKHIKDLSSLTLLNLS-QNCN-LTDKTLE-LISGLTGLVSLNVSNSRITS 362
            C   LT+    +I   SS  L++L  + C  LT+  +  L+   + L  L+V++  I  
Sbjct: 356 TCCLDLTEITACNIAR-SSAGLVSLKIEACRILTENNIPLLMERCSCLEELDVTDCNIDD 414

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
           AGL  +   K L++L L  CKV+ N I+ +  R+  +L+  
Sbjct: 415 AGLECIAKCKFLKTLKLGFCKVSDNGIEHV-GRNCSDLIEL 454


>gi|440712554|ref|ZP_20893170.1| hypothetical protein RBSWK_00227 [Rhodopirellula baltica SWK14]
 gi|436442709|gb|ELP35820.1| hypothetical protein RBSWK_00227 [Rhodopirellula baltica SWK14]
          Length = 341

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 2/249 (0%)

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           D  +K LS  + +  L +  +  +D  +  L  L  L  L + G     A   S+S L +
Sbjct: 83  DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  +      ++DDG    +++  L+ ++L  + +TD+ L  +  L  L  LNL    I 
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT 202

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
            E    ++ L  L+ LEL++T  G  G+  ++ +  LE INL  T I + SL+   G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261

Query: 253 LKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           L  LN+D    IT+  +  + SL  L  L L    ++      L+  + L +L +   GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321

Query: 312 TDAGVKHIK 320
            +   K ++
Sbjct: 322 EEEPAKELE 330



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
           G ++ L  L  L+ L + +     D+  K +SGL  L ++    + VTD G + L  L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 153
           L  ++L   PVT   L S+S L  L  LNL   +++ +  E  SK               
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226

Query: 154 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 204
                   I  L+ +NL   +I +E L   +G T+L  LN+D+C  I +E +  +  L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPH 286

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           LK L L  T V    L  L  L  LE++ ++  G+ +   ++L  +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)

Query: 133 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
           +  ++L     SD DG  K  S   ++  L +     +D  ++ L  L NL+ L +    
Sbjct: 69  VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
             D    +++GL  L  +   DT V   G   L+ L  L+ ++L  + ++D +L  ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
             L  LNL   +IT      ++ L  L  L+L        G   + N + L  + +    
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           + +  +K  +  +SLT+LN+     +T++ + +I  L  L  L++  + ++   L  LKP
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307

Query: 371 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           L+ L +L + +  +     K L++   PNL  F 
Sbjct: 308 LQELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340


>gi|281210637|gb|EFA84803.1| hypothetical protein PPL_01796 [Polysphondylium pallidum PN500]
          Length = 739

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 162/330 (49%), Gaps = 8/330 (2%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS + +L  +S       T  GM+ F  + +L  L L  C   +  + +LK ++KLE L+
Sbjct: 360 LSRMYHLQKVSLVACFGFTDLGMENFKRMEHLTSLILTDCAVTNVSVKSLKQMVKLEELS 419

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAAC 123
           ++    ITDS +  LS L  LK L +S   +TD GI + +    KL  LNL    VT   
Sbjct: 420 LRNTK-ITDSGLTLLSSLVELKFLDLSACNITDEGITFAIPCFTKLETLNLSATSVTEKA 478

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVHLKGLTNL 181
           +  L+ L  L  L L+ C +  +    F  +   +LK+L++   +I     V+L+ L NL
Sbjct: 479 IQKLTKL-PLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAGFVNLQRLPNL 537

Query: 182 ESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
             L L     + D  + +L  L N++ L+LSD  +  + +  L+ L  L  ++LS T IS
Sbjct: 538 TVLKLPGRDSLSDAHISHLNALQNVRRLDLSDY-INITTIAPLNPLRYLCELSLSNTKIS 596

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           D S+  + G S+L  LNLD  ++ D G++ L SL+ L  L L    I       L     
Sbjct: 597 DDSIDSIIGCSNLVILNLDRTRVRDIGVSKLISLS-LHTLSLMATGIRGDCLTTLSQLIT 655

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
           L SL I    + DA V  + DL +LT ++L
Sbjct: 656 LTSLNISSNDIQDAKVLPLLDLPNLTYIDL 685



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 163/369 (44%), Gaps = 41/369 (11%)

Query: 56  GLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLL 112
           G  K+E LN+ + + I  +D     LS + +L+ +  ++C   TD G+   K ++ LT L
Sbjct: 335 GNAKIEELNLNYQHLIVSNDFLQNCLSRMYHLQKVSLVACFGFTDLGMENFKRMEHLTSL 394

Query: 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
            L  C VT   + SL  +  L  L+L   +++D G    S +  LK L+L    ITDE +
Sbjct: 395 ILTDCAVTNVSVKSLKQMVKLEELSLRNTKITDSGLTLLSSLVELKFLDLSACNITDEGI 454

Query: 173 VH-LKGLTNLESLNLDSCGIGDEGLVNLTGLC-------------------------NLK 206
              +   T LE+LNL +  + ++ +  LT L                           LK
Sbjct: 455 TFAIPCFTKLETLNLSATSVTEKAIQKLTKLPLVSLYLSNCPMIGNQSLFFITLFGKTLK 514

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITD 265
            L++  T++G +G  +L  L NL  + L     +SD  +  L  L +++ L+L +  I  
Sbjct: 515 LLDIFGTKIGGAGFVNLQRLPNLTVLKLPGRDSLSDAHISHLNALQNVRRLDL-SDYINI 573

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-- 323
           T +A L  L  L  L L   +I+D     +    NL  L +    + D GV  +  LS  
Sbjct: 574 TTIAPLNPLRYLCELSLSNTKISDDSIDSIIGCSNLVILNLDRTRVRDIGVSKLISLSLH 633

Query: 324 --SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
             SL    +  +C      L  +S L  L SLN+S++ I  A +  L  L NL  + L +
Sbjct: 634 TLSLMATGIRGDC------LTTLSQLITLTSLNISSNDIQDAKVLPLLDLPNLTYIDLRN 687

Query: 382 CKVTANDIK 390
            +     +K
Sbjct: 688 TQAFTASLK 696


>gi|72385461|ref|XP_846398.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
 gi|25956236|emb|CAB95328.2| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 1448

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 179/406 (44%), Gaps = 58/406 (14%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNL 85
           ++A A ++ L KL L  CT I  G+  L  L +L+ L++   N  TD++ ++ L     +
Sbjct: 531 VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTN--TDNESLRSLCLSQTV 588

Query: 86  KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
            SL +S C K+T+  ++++  L+ L  LNL  C    A  ++L  L  L    L+   ++
Sbjct: 589 VSLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAGWEALEKLQQLHVAILSNTHIT 646

Query: 145 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLT 200
           D     FS   +L  L+L F N++ D  +  L  +T LE LNLDSC    +GL     L 
Sbjct: 647 DRDISHFSNCKNLITLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELP 704

Query: 201 GLC--NLKCLELSDTQV-----GSSGLR-------------HLSGLTNLESINLSFTGIS 240
            LC  N+K ++L D+ +     G+S +R              LS L  LE +NL +    
Sbjct: 705 RLCVLNIKGVQLEDSVIVSLGNGNSFVRLSLENCKGFGDVAPLSNLVTLEELNLHYCDKV 764

Query: 241 DGSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTG 276
              +  L  L  L+ L+L   Q+ D                        T ++A+ SLT 
Sbjct: 765 TSGMGTLGRLPQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISAIASLTA 824

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           L  L++       SG         LR   +      D  V+H+ +  SL  LNL+   ++
Sbjct: 825 LEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENVRHVSECKSLNTLNLAFCKDI 884

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
           TD T   +S +T L  LN+        G+  L  L   R L+++ C
Sbjct: 885 TDVT--ALSKITMLEELNLDCCHNIRKGIETLGTLPKARILSMKEC 928



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 165/395 (41%), Gaps = 40/395 (10%)

Query: 19   NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
            N  IT + +  F+   NL+ LDL  C ++   +  L  +  LE LN+  C+ I    +  
Sbjct: 642  NTHITDRDISHFSNCKNLITLDLSFCNKLL-DVTALSNITTLEELNLDSCSNIRKG-LSV 699

Query: 79   LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
            L  L  L  L I   ++ DS I  L        L+LE C      +  LS L +L  LNL
Sbjct: 700  LGELPRLCVLNIKGVQLEDSVIVSLGNGNSFVRLSLENCKGFGD-VAPLSNLVTLEELNL 758

Query: 139  NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH------------------------ 174
            + C     G     ++  L+VL+LG  ++ D  L +                        
Sbjct: 759  HYCDKVTSGMGTLGRLPQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISA 818

Query: 175  LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
            +  LT LE LN+D+C     G      L  L+   LS+T+     +RH+S   +L ++NL
Sbjct: 819  IASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENVRHVSECKSLNTLNL 878

Query: 235  SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
            +F   I+D  +  L+ ++ L+ LNLD       G+  L +L     L +    + D  A 
Sbjct: 879  AFCKDITD--VTALSKITMLEELNLDCCHNIRKGIETLGTLPKARILSMKECYMGDGYAQ 936

Query: 294  YLRNFKNLRS-----LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
                  N +S     LE   G ++   + ++  L  L L +  + C +        S L 
Sbjct: 937  QCSILGNSKSLVKLNLERSRGRISVKALSNVATLEELVLDHARKVCCIPS-----FSCLP 991

Query: 349  GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
             L  LN+  + I     +++   K+LRSL L  CK
Sbjct: 992  RLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCK 1026



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 175/391 (44%), Gaps = 34/391 (8%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           ++  + L NL  L+L         +  +    KL  L I  CN ITD+   P+S L  L+
Sbjct: 272 IRGISRLTNLKCLELNSTNIDDSCVEEISACAKLSKLCISKCNNITDA--TPISQLAALE 329

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSD 145
            L +S   +T  GI  L  L +L +L+L G PV   CL  L   GSL  LN++ R QL+D
Sbjct: 330 ELNLSNCHIT-KGIGTLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSLERLNISYRIQLTD 388

Query: 146 ---------------DGCEKFSK-------IGSLKVLNLGFNEITDECLVHLKGLTNLES 183
                          +GC + ++       +  L+VL++    +++  L  +     L  
Sbjct: 389 INPLSNATAIEELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVK 448

Query: 184 LNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           ++LD+C G GD  L  L+ +  L+ L +       SG+  L  L  L  +N+    IS  
Sbjct: 449 VSLDNCAGFGDMTL--LSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSL 506

Query: 243 SLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
               +    SL  LN+++  IT  + + AL ++  L  L L G    D+G   L N   L
Sbjct: 507 DFTGIGASKSLLQLNMES--ITGLSNVEALANILTLEKLSLHGCTGIDAGIGCLGNLPQL 564

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           + L++ G    +  ++ +    ++  LNLS    +T+  +  IS L  L  LN+SN    
Sbjct: 565 KMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTN--VSHISSLEALNELNLSNCFGI 622

Query: 362 SAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           +AG   L+ L+ L    L +  +T  DI   
Sbjct: 623 NAGWEALEKLQQLHVAILSNTHITDRDISHF 653



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 148/349 (42%), Gaps = 60/349 (17%)

Query: 71   ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
            IT  D+  LS    L  L+   C K++D  + Y   +Q L  L +  C      L++L  
Sbjct: 1074 ITAKDIACLSSCKKLVKLKFFQCEKLSDVTVVY--KIQSLEELIVTSCSDGLKGLNALGT 1131

Query: 130  LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 188
            L  L + +L   + SD   E      SL  L++    E+TD  +  L  +T+LE L+L  
Sbjct: 1132 LPRLRFHHLRNVRGSDISVESIGTSKSLVRLHIEVGEELTD--ITPLSNITSLEELSL-- 1187

Query: 189  CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
                                   D +    G+  L  L  L+S++L  + ISD +L  + 
Sbjct: 1188 ----------------------RDYRKPPEGVGTLGKLPRLKSLDLGLSRISDSTLYCIC 1225

Query: 249  GLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR--SLE 305
               S+ SLNLD + ++TD  ++ +++LT L  L+L G     SG   L     LR  +LE
Sbjct: 1226 LSRSITSLNLDSSWKLTD--ISHISNLTALEELNLGGCYYITSGWEALSELPRLRVLNLE 1283

Query: 306  ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD-------KTL---------ELISGLTG 349
                   D G  +I     L  LNL + C++TD       KTL         EL  G + 
Sbjct: 1284 FTRATTRDGGY-YISRCKYLVTLNL-ELCDMTDASCLANIKTLEELHIGGCDELTQGFSA 1341

Query: 350  LVS------LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            L +      LN+  S IT   LR ++P   +  L L  C V  NDI  L
Sbjct: 1342 LFTLPQLRILNLICSLITDEDLREIQPPHTIEELNLSYC-VELNDITPL 1389



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 161/380 (42%), Gaps = 44/380 (11%)

Query: 36   LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 95
             V+L LE C +  G +  L  L+ LE LN+ +C+ +T S M  L  L  L+ L +  ++V
Sbjct: 730  FVRLSLENC-KGFGDVAPLSNLVTLEELNLHYCDKVT-SGMGTLGRLPQLRVLDLGRTQV 787

Query: 96   TD------------------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
             D                        + I+ +  L  L  LN++ C    +  +    L 
Sbjct: 788  DDNSLENICTCSSPLVSLNLSNCKKITSISAIASLTALEELNIDNCCNVTSGWNVFGTLH 847

Query: 132  SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG 190
             L    L+  + +D+     S+  SL  LNL F  +ITD  +  L  +T LE LNLD C 
Sbjct: 848  QLRVATLSNTRTNDENVRHVSECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCH 905

Query: 191  IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG--SLRKLA 248
               +G+  L  L   + L + +  +G    +  S L N +S+       S G  S++ L+
Sbjct: 906  NIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALS 965

Query: 249  GLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF---KNLRSL 304
             +++L+ L LD AR++       + S + L  L +   + TD      +N    K+LRSL
Sbjct: 966  NVATLEELVLDHARKV-----CCIPSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRSL 1020

Query: 305  EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
             +     +TD  V           +N    CN   K  E +  L  L    +S+++IT+ 
Sbjct: 1021 NLSHCKWVTDISVLSSLLTLEELNVNC---CNGIRKGWESLGKLPLLRVAILSDTKITAK 1077

Query: 364  GLRHLKPLKNLRSLTLESCK 383
             +  L   K L  L    C+
Sbjct: 1078 DIACLSSCKKLVKLKFFQCE 1097



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 151/371 (40%), Gaps = 56/371 (15%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLNIKWC----------------------NCITDSD 75
           +L+L  C RI  G+  +  L KL  L++K                        NC    D
Sbjct: 400 ELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGD 459

Query: 76  MKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           M  LS +  L+ L I  C+ +  SG+  L  L  L +LN++   +++     + A  SL 
Sbjct: 460 MTLLSSIVTLEELNIQKCADII-SGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLL 518

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
            LN+          E  + + +++                L  +  LE L+L  C   D 
Sbjct: 519 QLNM----------ESITGLSNVEA---------------LANILTLEKLSLHGCTGIDA 553

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           G+  L  L  LK L+LS T   +  LR L     + S+NLS       ++  ++ L +L 
Sbjct: 554 GIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCW-KMTNVSHISSLEALN 612

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLT 312
            LNL      + G  AL  L  L    L    ITD   ++  N KNL +L++  C   L 
Sbjct: 613 ELNLSNCFGINAGWEALEKLQQLHVAILSNTHITDRDISHFSNCKNLITLDLSFCNKLLD 672

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 372
              + +I  L  L L     +C+   K L ++  L  L  LN+   ++  + +  L    
Sbjct: 673 VTALSNITTLEELNL----DSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIVSLGNGN 728

Query: 373 NLRSLTLESCK 383
           +   L+LE+CK
Sbjct: 729 SFVRLSLENCK 739


>gi|432862145|ref|XP_004069745.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryzias latipes]
          Length = 403

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 172/336 (51%), Gaps = 44/336 (13%)

Query: 79  LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           + G+ +++SL +  C  +TD+G+  A+++ +  L LLNL  C          S+LG +  
Sbjct: 89  IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITD-----SSLGRIAQ 143

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDE 194
              N   L   GC   +  G L +                 GL  L+SLNL SC  + D 
Sbjct: 144 YLKNLEALDLGGCSNITNTGLLLIA---------------WGLHKLKSLNLRSCRHVSDV 188

Query: 195 GLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGS 243
           G+ +++G+         +L+ L L D Q +    L+H+S GL  L+ +NLSF G ISD  
Sbjct: 189 GIGHISGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDAG 248

Query: 244 LRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNF 298
           +  L+ ++ L SLNL +   I+DTG+   A+ SL  L+ LD+ F  +I D   AY+ +  
Sbjct: 249 MIHLSHMAHLCSLNLRSCDNISDTGIMHLAMGSLQ-LSGLDVSFCDKIGDQSLAYVAQGL 307

Query: 299 KNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVS 356
             L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  +++ 
Sbjct: 308 YQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLY 367

Query: 357 N-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
             ++IT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 368 GCTKITKRGLERITQLPCLKVLNLGLWQMTDSERVR 403



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 154/311 (49%), Gaps = 50/311 (16%)

Query: 54  LKGLMKLES---------------------------LNIKWCNCITDSDMKPLSG-LTNL 85
           ++G+  +ES                           LN+  C  ITDS +  ++  L NL
Sbjct: 89  IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITDSSLGRIAQYLKNL 148

Query: 86  KSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALG--------SLF 134
           ++L +  CS +T++G+  +  GL KL  LNL  C  V+   +  +S +         SL 
Sbjct: 149 EALDLGGCSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHISGMTRSAAEGCLSLE 208

Query: 135 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 190
            L L  CQ L+D   +  SK +  LKVLNL F   I+D  ++HL  + +L SLNL SC  
Sbjct: 209 KLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLRSCDN 268

Query: 191 IGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RK 246
           I D G+++L  G   L  L++S   ++G   L +++ GL  L+S++L    ISD  + R 
Sbjct: 269 ISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDDGINRM 328

Query: 247 LAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRS 303
           +  +  LK+LN+    +ITD GL  +   LT LT +DL+G  +IT  G   +     L+ 
Sbjct: 329 VRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKV 388

Query: 304 LEICGGGLTDA 314
           L +    +TD+
Sbjct: 389 LNLGLWQMTDS 399



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 30/236 (12%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   +G+        ++L KL L+ C +    L +L    
Sbjct: 170 GLHKLKSLNLRSCRHVSDVGIGHISGMTRSAAEGCLSLEKLTLQDCQK----LTDLSLKH 225

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             KGL KL+ LN+ +C  I+D+ M  LS + +L SL + SC  ++D+GI +L  G  +L+
Sbjct: 226 VSKGLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLRSCDNISDTGIMHLAMGSLQLS 285

Query: 111 LLNLEGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-F 164
            L++  C        SL+ +    Y    L+L  C +SDDG  +  + +  LK LN+G  
Sbjct: 286 GLDVSFCDKIGD--QSLAYVAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQC 343

Query: 165 NEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
             ITD+ L  +   LT L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 344 VRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTDS 399



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 32/245 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGL--CNLK-CLELSDTQVGSSGLRHLSG 225
           ++G+ ++ESLNL  C      G+G   + ++  L   NL  C +++D+ +G    R    
Sbjct: 89  IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITDSSLG----RIAQY 144

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 275
           L NLE+++L   + I++  L  +A GL  LKSLNL + R ++D G+  ++ +T       
Sbjct: 145 LKNLEALDLGGCSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHISGMTRSAAEGC 204

Query: 276 -GLTHLDLFG-ARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             L  L L    ++TD    ++    N   + +L  CGG ++DAG+ H+  ++ L  LNL
Sbjct: 205 LSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGG-ISDAGMIHLSHMAHLCSLNL 263

Query: 331 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 387
               N++D   + L  G   L  L+VS   +I    L ++ + L  L+SL+L SC ++ +
Sbjct: 264 RSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDD 323

Query: 388 DIKRL 392
            I R+
Sbjct: 324 GINRM 328


>gi|21674346|ref|NP_662411.1| Rab family protein [Chlorobium tepidum TLS]
 gi|21647522|gb|AAM72753.1| Rab family protein [Chlorobium tepidum TLS]
          Length = 1102

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 138/263 (52%), Gaps = 18/263 (6%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           + ++  L  L SL++ W      SD+ PL  L +L  LQ+S +++TD  IA L  L+ LT
Sbjct: 97  ITDIAPLASLNSLSMLWLFGNKISDIAPLESLKSLTELQLSSNQITD--IAPLASLKSLT 154

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
            L+L G  ++      L +L SL  L+L+  Q++D      + + SL  L+L  N+I+D 
Sbjct: 155 ELSLSGNNISDIA--PLESLKSLTELSLSSNQITD--IAPLASLKSLTELSLSSNQISD- 209

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
            +  L+ L +L  L L    I D  +  L  L +L  L+LS  Q+  + +  L+ L +L 
Sbjct: 210 -IAPLESLKSLTELQLSRNQISD--IAPLESLKSLTELQLSSNQI--TDIAPLASLKSLT 264

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
            + LS   ISD  +  L  L+SL  L L+  QITD  +A L SL  LT L+L   +ITD 
Sbjct: 265 ELQLSRNQISD--IAPLESLNSLSKLWLNGNQITD--IAPLASLNSLTELELSSNQITD- 319

Query: 291 GAAYLRNFKNLRSLEICGGGLTD 313
             A L + K+L +L +    ++D
Sbjct: 320 -IAPLASLKSLSTLWLSSNQISD 341



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 157/335 (46%), Gaps = 56/335 (16%)

Query: 93  SKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYL--------------N 137
           +++TD  I+ L  L  L++L L+   +T  A L SL++L  L+                +
Sbjct: 73  NQITD--ISPLASLNSLSMLWLDRNQITDIAPLASLNSLSMLWLFGNKISDIAPLESLKS 130

Query: 138 LNRCQLSDDGCEKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           L   QLS +     + + SLK    L+L  N I+D  +  L+ L +L  L+L S  I D 
Sbjct: 131 LTELQLSSNQITDIAPLASLKSLTELSLSGNNISD--IAPLESLKSLTELSLSSNQITD- 187

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
            +  L  L +L  L LS  Q+  S +  L  L +L  + LS   ISD  +  L  L SL 
Sbjct: 188 -IAPLASLKSLTELSLSSNQI--SDIAPLESLKSLTELQLSRNQISD--IAPLESLKSLT 242

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
            L L + QITD  +A L SL  LT L L   +I+D   A L +  +L  L + G  +TD 
Sbjct: 243 ELQLSSNQITD--IAPLASLKSLTELQLSRNQISD--IAPLESLNSLSKLWLNGNQITD- 297

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---------- 364
            +  +  L+SLT L LS N  +TD  +  ++ L  L +L +S+++I+             
Sbjct: 298 -IAPLASLNSLTELELSSN-QITD--IAPLASLKSLSTLWLSSNQISDIAPLASLESLSE 353

Query: 365 -------LRHLKPLKNLRSLTLESCKVTANDIKRL 392
                  +  + PL +L SLT     V  N IKRL
Sbjct: 354 LSLSSNQISDISPLASLNSLT--GFDVRRNPIKRL 386


>gi|417302467|ref|ZP_12089567.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
           WH47]
 gi|327541207|gb|EGF27751.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
           WH47]
          Length = 341

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 2/249 (0%)

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           D  +K LS  + +  L +  +  +D  +  L  L  L  L + G     A   S+S L +
Sbjct: 83  DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  +      ++DDG    +++  L+ ++L  + +TD+ L  +  L  L  LNL    I 
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT 202

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
            E    ++ L  L+ LEL++T  G  G+  ++ +  LE INL  T I + SL+   G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261

Query: 253 LKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           L  LN+D    IT+  +  + SL  L  L L    ++      L+  + L +L +   GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321

Query: 312 TDAGVKHIK 320
            +   K ++
Sbjct: 322 EEEPAKELE 330



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
           G ++ L  L  L+ L + +     D+  K +SGL  L ++    + VTD G + L  L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 153
           L  ++L   PVT   L S+S L  L  LNL   +++ +  E  SK               
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226

Query: 154 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 204
                   I  L+ +NL   +I +E L   +G T+L  LN+D+C  I +E +  +  L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIISLPH 286

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           LK L L  T V    L  L  L  LE++ ++  G+ +   ++L  +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)

Query: 133 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
           +  ++L     SD DG  K  S   ++  L +     +D  ++ L  L NL+ L +    
Sbjct: 69  VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
             D    +++GL  L  +   DT V   G   L+ L  L+ ++L  + ++D +L  ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
             L  LNL   +IT      ++ L  L  L+L        G   + N + L  + +    
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           + +  +K  +  +SLT+LN+     +T++ + +I  L  L  L++  + ++   L  LKP
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKP 307

Query: 371 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           L+ L +L + +  +     K L++   PNL  F 
Sbjct: 308 LQELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340


>gi|91085811|ref|XP_974701.1| PREDICTED: similar to partner of paired CG9952-PA [Tribolium
           castaneum]
          Length = 439

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 164/295 (55%), Gaps = 18/295 (6%)

Query: 103 LKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSK-IGSL 157
           ++G+  L  LNL GC        S + +    +L  L+L+ C Q++D    + ++ + +L
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 198

Query: 158 KVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNL-TGLCNLKCLELSDT 213
           +VL LG  + +T+  L+ +  GL  L+ LNL SC  +GD+G+ +L +G  +L+ L L D 
Sbjct: 199 EVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQDC 258

Query: 214 Q-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 270
           Q +    L+H +GLT+L SINLSF   I+D  L+ LA +++L+ LNL +   I+DTG+A 
Sbjct: 259 QKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAF 318

Query: 271 LTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKD-LSSLT 326
           L    + ++ LD+ F  +I D    ++ +   NLR+L +    L+D G+  I + L  L 
Sbjct: 319 LAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKIANSLHDLE 378

Query: 327 LLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
            LN+ Q   +TDK L  I+  L  L  +++   +RIT+ GL  +  L  L  L L
Sbjct: 379 TLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERIMKLPQLSVLNL 433



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 146/295 (49%), Gaps = 42/295 (14%)

Query: 54  LKGLMKLESLNIKWCNCITD--------SDMKPLSGL-----------------TNLKSL 88
           ++G+  LESLN++ C  + D        +D   L+ L                  +LK+L
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 198

Query: 89  QI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSL-SALGSLFYLNLNRC 141
           ++     CS VT+SG+  +  GL+KL  LNL  C  V    +  L S   SL +L L  C
Sbjct: 199 EVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQDC 258

Query: 142 Q-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 198
           Q LSD+  +  + + SL  +NL F   ITD  L HL  +TNL  LNL SC  I D G+  
Sbjct: 259 QKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAF 318

Query: 199 LT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLK 254
           L  G   +  L++S   ++G   L H+S GL NL ++ +S   +SD  L K+A  L  L+
Sbjct: 319 LAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKIANSLHDLE 378

Query: 255 SLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 306
           +LN+    ++TD GL  +  SL  L  +DL+G  RIT  G   +     L  L +
Sbjct: 379 TLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERIMKLPQLSVLNL 433



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 32/242 (13%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLN 64
           GL  L  L+ R    +  QG++  A G  +L  L L+ C ++    L +  GL  L S+N
Sbjct: 220 GLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISIN 279

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA- 121
           + +C  ITDS +K L+ +TNL+ L + SC  ++D+G+A+L +G  +++ L++  C     
Sbjct: 280 LSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGD 339

Query: 122 -ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
            A +     L +L  L ++ CQLSD+G  K +                         L +
Sbjct: 340 QALVHISQGLFNLRNLLMSACQLSDEGLAKIA-----------------------NSLHD 376

Query: 181 LESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFT 237
           LE+LN+  C  + D+GL  +   L  LKC++L   T++ + GL  +  L  L  +NL   
Sbjct: 377 LETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERIMKLPQLSVLNLGLW 436

Query: 238 GI 239
            +
Sbjct: 437 HV 438



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 24/177 (13%)

Query: 223 LSGLTNLESINLSF------TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-L 274
           + G+ NLES+NL         GIS   +   A   +L  L+L   +Q+TDT L  +   L
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISHAFV---ADSPTLTELDLSLCKQVTDTSLTRIAQHL 195

Query: 275 TGLTHLDLFG-ARITDSG----AAYLRNFK--NLRSLEICGGGLTDAGVKHIKD-LSSLT 326
             L  L+L G + +T+SG    A  L+  K  NLRS    G    D G++H+     SL 
Sbjct: 196 KNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVG----DQGIQHLASGNPSLE 251

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 382
            L L     L+D+ L+  +GLT L+S+N+S    IT +GL+HL  + NLR L L SC
Sbjct: 252 HLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSC 308



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 97/172 (56%), Gaps = 7/172 (4%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKL 60
           ++ +GL++L S++     +IT  G+K  A + NL +L+L  C  I   G+  L +G  ++
Sbjct: 267 KHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRI 326

Query: 61  ESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLK-GLQKLTLLNLEGCP 118
            SL++ +C+ I D  +  +S GL NL++L +S  +++D G+A +   L  L  LN+  C 
Sbjct: 327 SSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKIANSLHDLETLNIGQCS 386

Query: 119 -VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEI 167
            VT   L +++ +L  L  ++L  C +++  G E+  K+  L VLNLG   +
Sbjct: 387 RVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERIMKLPQLSVLNLGLWHV 438



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 24/237 (10%)

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 225
           ++G+ NLESLNL  C  +GD G+ +        LT L    C +++DT +     R    
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLT----RIAQH 194

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLD 281
           L NLE + L   + +++  L  +A GL  LK LNL +   + D G+  L S    L HL 
Sbjct: 195 LKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLG 254

Query: 282 LFG-ARITDSGAAYLRNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
           L    +++D    +     +L S  L  C   +TD+G+KH+  +++L  LNL    N++D
Sbjct: 255 LQDCQKLSDEALKHATGLTSLISINLSFCVS-ITDSGLKHLAKMTNLRELNLRSCDNISD 313

Query: 339 KTLELIS-GLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 392
             +  ++ G + + SL+VS   +I    L H+ + L NLR+L + +C+++   + ++
Sbjct: 314 TGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKI 370


>gi|320165520|gb|EFW42419.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 694

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 148/341 (43%), Gaps = 25/341 (7%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N IT       + LT L  L ++ +++TD       GL  LT+L L G  +T    +  +
Sbjct: 77  NQITSIPASAFANLTALTELDLTVNQITDISANAFAGLAALTMLFLPGNNITGIPANVFA 136

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L +L  LNL+  QL+    + F+ + +L+ LNL  N+IT         L  L+SL L  
Sbjct: 137 GLTALLVLNLSGNQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKSLGLSG 196

Query: 189 CGIGDE-----------GLVNL-------------TGLCNLKCLELSDTQVGSSGLRHLS 224
             +G             G ++L             TGL  L  L LS+  + S     ++
Sbjct: 197 NRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNNNITSIPANAVT 256

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
           GLT L+ +++S    +       AGL++L  L+L   Q T     A T LT LT L L  
Sbjct: 257 GLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSN 316

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
            + TD  A        L  L + G  LT      + DL+ L  L+LS N  +T       
Sbjct: 317 NQFTDISANAFAGLPALMELGLAGNQLTSIPTSALLDLTLLNFLSLSAN-QITSIPASAF 375

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           +GLT L SL +S +++TS        L  L  L+L++   T
Sbjct: 376 TGLTALFSLILSRNQLTSIPAAAFSGLTLLNILSLDTNPFT 416



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 144/331 (43%), Gaps = 5/331 (1%)

Query: 6   SGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLES 62
           S  +NLT+L+      N IT     AFAGL  L  L L     I G   N+  GL  L  
Sbjct: 85  SAFANLTALTELDLTVNQITDISANAFAGLAALTMLFLPG-NNITGIPANVFAGLTALLV 143

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+   N +        +GLT L++L +  +++T    A    L  L  L L G  + + 
Sbjct: 144 LNLSG-NQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKSLGLSGNRLGSN 202

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             ++ +   +L +++L+  Q++    + F+ + +L  L L  N IT      + GLT L+
Sbjct: 203 LANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNNNITSIPANAVTGLTALK 262

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L++           +  GL  L  L LS+ Q  S      +GLT L S+ LS    +D 
Sbjct: 263 YLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSNNQFTDI 322

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           S    AGL +L  L L   Q+T    +AL  LT L  L L   +IT   A+       L 
Sbjct: 323 SANAFAGLPALMELGLAGNQLTSIPTSALLDLTLLNFLSLSANQITSIPASAFTGLTALF 382

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           SL +    LT         L+ L +L+L  N
Sbjct: 383 SLILSRNQLTSIPAAAFSGLTLLNILSLDTN 413



 Score = 45.1 bits (105), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 112/265 (42%), Gaps = 8/265 (3%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER---CTRIHGGLVNLKGLMK 59
           +  +GL+ L +L+ + N  IT+     FA L  L  L L      + +     N   L  
Sbjct: 157 DAFTGLTALQTLNLQSNQ-ITSISAAGFADLAALKSLGLSGNRLGSNLANAFTNQSALGF 215

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           ++  N +  + + D+     +GL  L +L +S + +T      + GL  L  L++ G   
Sbjct: 216 IDLSNNQITSLLADA----FTGLAALNTLFLSNNNITSIPANAVTGLTALKYLDVSGNQF 271

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
           T+    S + L +L YL+L+  Q +      F+ + +L  L L  N+ TD       GL 
Sbjct: 272 TSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSNNQFTDISANAFAGLP 331

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            L  L L    +       L  L  L  L LS  Q+ S      +GLT L S+ LS   +
Sbjct: 332 ALMELGLAGNQLTSIPTSALLDLTLLNFLSLSANQITSIPASAFTGLTALFSLILSRNQL 391

Query: 240 SDGSLRKLAGLSSLKSLNLDARQIT 264
           +       +GL+ L  L+LD    T
Sbjct: 392 TSIPAAAFSGLTLLNILSLDTNPFT 416



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 90/224 (40%), Gaps = 33/224 (14%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           + +  +GL+ L +L F  NN IT+    A  GL  L  LD+           +  GL  L
Sbjct: 227 LADAFTGLAALNTL-FLSNNNITSIPANAVTGLTALKYLDVSGNQFTSFPASSFAGLTAL 285

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG---- 116
             L++   N  T       +GLT L SLQ+S ++ TD       GL  L  L L G    
Sbjct: 286 TYLSLSN-NQATSISAWAFTGLTALTSLQLSNNQFTDISANAFAGLPALMELGLAGNQLT 344

Query: 117 -CP-------------------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 156
             P                   +T+    + + L +LF L L+R QL+      FS +  
Sbjct: 345 SIPTSALLDLTLLNFLSLSANQITSIPASAFTGLTALFSLILSRNQLTSIPAAAFSGLTL 404

Query: 157 LKVLNLGFNEITDECLVHLKGLTN-------LESLNLDSCGIGD 193
           L +L+L  N  T       +GL N        ESL+ ++   G+
Sbjct: 405 LNILSLDTNPFTTLPPGLFQGLPNDIDLSLYYESLSPNNFSFGE 448


>gi|290996013|ref|XP_002680577.1| predicted protein [Naegleria gruberi]
 gi|284094198|gb|EFC47833.1| predicted protein [Naegleria gruberi]
          Length = 395

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 144/321 (44%), Gaps = 8/321 (2%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           L  LT L  R    +  +G K  + L  L  LD+   +    G   +  + +L  L +++
Sbjct: 75  LKQLTELDVRYC-RMGEEGSKIISKLGQLTNLDISHNSIRSKGFKFICEMKQLIILKVQY 133

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N +  S    +  L  L  L IS + + D G   +  L++LT L++    ++   +  L
Sbjct: 134 -NKLEKSSSNQIEDLKQLTKLDISGNNIDDEGAKSIGQLKQLTKLDISVNYLSNVGVKHL 192

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           S L  L YLN++   + ++  +    +  L  LN+G N++  E    +  + +L+ L   
Sbjct: 193 SDLQQLIYLNVSYNDVDEEVAKDIYNMKKLSKLNIGGNDLNIESFSMIGKMDHLKKLEFG 252

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
             G+G++G   ++ L +L  L++S+ Q+  +G   LS + +L  +++ F  I D  +R +
Sbjct: 253 VVGLGNDGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTKLDVGFNSIGDRGIRSI 312

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           + L  L  LN    +  + G   ++ +  LT L +   +  D G   +   KNL+ L I 
Sbjct: 313 SMLKKLTDLNARNNEFGNEGAKYISEMMQLTILQVDENKFGDEGIIAITKMKNLKKLRIF 372

Query: 308 GGGLTDAG------VKHIKDL 322
              +   G       KHI  L
Sbjct: 373 SEYMDKEGKDALLNTKHITKL 393



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 151/334 (45%), Gaps = 26/334 (7%)

Query: 72  TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
           T +D++P+     L  L IS + +   G+  +  L++LT L++  C +       +S LG
Sbjct: 42  TFNDIEPIGKFKQLTILNISDNPIM-KGVEAIGLLKQLTELDVRYCRMGEEGSKIISKLG 100

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
            L  L+++   +   G +   ++  L +L + +N++       ++ L  L  L++    I
Sbjct: 101 QLTNLDISHNSIRSKGFKFICEMKQLIILKVQYNKLEKSSSNQIEDLKQLTKLDISGNNI 160

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            DEG  ++  L  L  L++S   + + G++HLS L  L  +N+S+  + +   + +  + 
Sbjct: 161 DDEGAKSIGQLKQLTKLDISVNYLSNVGVKHLSDLQQLIYLNVSYNDVDEEVAKDIYNMK 220

Query: 252 SLKSLNLDARQIT------------------------DTGLAALTSLTGLTHLDLFGARI 287
            L  LN+    +                         + G   ++ L  LT LD+   +I
Sbjct: 221 KLSKLNIGGNDLNIESFSMIGKMDHLKKLEFGVVGLGNDGFEFISKLKHLTMLDISENQI 280

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
            D+GA  L   ++L  L++    + D G++ I  L  LT LN ++N    ++  + IS +
Sbjct: 281 NDNGAELLSRMEHLTKLDVGFNSIGDRGIRSISMLKKLTDLN-ARNNEFGNEGAKYISEM 339

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
             L  L V  ++    G+  +  +KNL+ L + S
Sbjct: 340 MQLTILQVDENKFGDEGIIAITKMKNLKKLRIFS 373



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 144/324 (44%), Gaps = 9/324 (2%)

Query: 56  GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           GL+K L  L++++C  + +   K +S L  L +L IS + +   G  ++  +++L +L +
Sbjct: 73  GLLKQLTELDVRYCR-MGEEGSKIISKLGQLTNLDISHNSIRSKGFKFICEMKQLIILKV 131

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
           +   +  +  + +  L  L  L+++   + D+G +   ++  L  L++  N +++  + H
Sbjct: 132 QYNKLEKSSSNQIEDLKQLTKLDISGNNIDDEGAKSIGQLKQLTKLDISVNYLSNVGVKH 191

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  L  L  LN+    + +E   ++  +  L  L +    +       +  + +L+ +  
Sbjct: 192 LSDLQQLIYLNVSYNDVDEEVAKDIYNMKKLSKLNIGGNDLNIESFSMIGKMDHLKKLEF 251

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
              G+ +     ++ L  L  L++   QI D G   L+ +  LT LD+    I D G   
Sbjct: 252 GVVGLGNDGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTKLDVGFNSIGDRGIRS 311

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           +   K L  L        + G K+I ++  LT+L + +N    D+ +  I+ +  L  L 
Sbjct: 312 ISMLKKLTDLNARNNEFGNEGAKYISEMMQLTILQVDEN-KFGDEGIIAITKMKNLKKLR 370

Query: 355 VSNSRITSAG------LRHLKPLK 372
           + +  +   G       +H+  LK
Sbjct: 371 IFSEYMDKEGKDALLNTKHITKLK 394


>gi|320168649|gb|EFW45548.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 977

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 160/361 (44%), Gaps = 16/361 (4%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIK 66
           SN T LS + N  IT+  + AF GL  L+ L L   + T I        GL  L  L +K
Sbjct: 58  SNTTHLSLQSNQ-ITSISVNAFTGLTALIWLYLTDNQITSISANA--FTGLSALTYLVLK 114

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-----GCPVTA 121
             N I+       +GL+ LK + +S +++ D   A   GL +++ L L        P T 
Sbjct: 115 E-NEISSISANAFTGLSALKEVDLSNNRIIDLPTAAFAGLPQMSTLRLSRNQFNSIPST- 172

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           A    L+AL  L YL+ N   +S      F+   +L  L L  N ITD        LT L
Sbjct: 173 AITTGLTALKEL-YLDANN--ISSISTAAFTGFPALTYLYLADNPITDIPANTFADLTEL 229

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I         GL  L  L+LS  ++ S      +GLT L  + L    +S 
Sbjct: 230 RHLYLRNNQISSVSATAFAGLSALNYLDLSMNKISSLSASVFTGLTALSILYLQSNQLSS 289

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
                   L++L+ L L + Q T+   AA T L  L  L L G  +T    + L +   L
Sbjct: 290 IPASSFTDLAALQHLYLSSNQFTNLPAAAFTGLDALIVLWLSGNPLTSVPTSALTSLSAL 349

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           R+L++    +T         L++LT+L L  N  +   +    +GLT L +L++SN+ +T
Sbjct: 350 RNLDLSSTKITSISANAFAGLNALTVLALHYN-PIASISGSAFTGLTALTALHLSNTPLT 408

Query: 362 S 362
           +
Sbjct: 409 T 409



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 135/319 (42%), Gaps = 3/319 (0%)

Query: 70  CITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           C T+S     SG+ +N   L +  +++T   +    GL  L  L L    +T+   ++ +
Sbjct: 44  CNTESLTTIPSGIPSNTTHLSLQSNQITSISVNAFTGLTALIWLYLTDNQITSISANAFT 103

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L +L YL L   ++S      F+ + +LK ++L  N I D       GL  + +L L  
Sbjct: 104 GLSALTYLVLKENEISSISANAFTGLSALKEVDLSNNRIIDLPTAAFAGLPQMSTLRLSR 163

Query: 189 CGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
                       TGL  LK L L    + S      +G   L  + L+   I+D      
Sbjct: 164 NQFNSIPSTAITTGLTALKELYLDANNISSISTAAFTGFPALTYLYLADNPITDIPANTF 223

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           A L+ L+ L L   QI+     A   L+ L +LDL   +I+   A+       L  L + 
Sbjct: 224 ADLTELRHLYLRNNQISSVSATAFAGLSALNYLDLSMNKISSLSASVFTGLTALSILYLQ 283

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
              L+        DL++L  L LS N   T+      +GL  L+ L +S + +TS     
Sbjct: 284 SNQLSSIPASSFTDLAALQHLYLSSN-QFTNLPAAAFTGLDALIVLWLSGNPLTSVPTSA 342

Query: 368 LKPLKNLRSLTLESCKVTA 386
           L  L  LR+L L S K+T+
Sbjct: 343 LTSLSALRNLDLSSTKITS 361



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 143/345 (41%), Gaps = 30/345 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            +GLS LT L  + N  I++    AF GL  L ++DL     I        GL ++ +L 
Sbjct: 102 FTGLSALTYLVLKENE-ISSISANAFTGLSALKEVDLSNNRIIDLPTAAFAGLPQMSTLR 160

Query: 65  IK--WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           +     N I  + +   +GLT LK L +  + ++    A   G   LT L L   P+T  
Sbjct: 161 LSRNQFNSIPSTAIT--TGLTALKELYLDANNISSISTAAFTGFPALTYLYLADNPITDI 218

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             ++ + L  L +L L   Q+S      F+ + +L  L+L  N+I+        GLT L 
Sbjct: 219 PANTFADLTELRHLYLRNNQISSVSATAFAGLSALNYLDLSMNKISSLSASVFTGLTALS 278

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L L S  +      + T L  L+ L LS  Q            TNL +   +FT     
Sbjct: 279 ILYLQSNQLSSIPASSFTDLAALQHLYLSSNQ-----------FTNLPAA--AFT----- 320

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
                 GL +L  L L    +T    +ALTSL+ L +LDL   +IT   A        L 
Sbjct: 321 ------GLDALIVLWLSGNPLTSVPTSALTSLSALRNLDLSSTKITSISANAFAGLNALT 374

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
            L +    +          L++LT L+LS N  LT     L  GL
Sbjct: 375 VLALHYNPIASISGSAFTGLTALTALHLS-NTPLTTLPPGLFQGL 418



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 88/215 (40%), Gaps = 17/215 (7%)

Query: 186 LDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           +D+CG G  G+ + +G   +CN + L    + +  S   HLS  +N          I+  
Sbjct: 26  VDACGTG--GVCDCSGTTVICNTESLTTIPSGI-PSNTTHLSLQSN---------QITSI 73

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           S+    GL++L  L L   QIT     A T L+ LT+L L    I+   A        L+
Sbjct: 74  SVNAFTGLTALIWLYLTDNQITSISANAFTGLSALTYLVLKENEISSISANAFTGLSALK 133

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            +++    + D        L  ++ L LS+N   +  +  + +GLT L  L +  + I+S
Sbjct: 134 EVDLSNNRIIDLPTAAFAGLPQMSTLRLSRNQFNSIPSTAITTGLTALKELYLDANNISS 193

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 397
                      L  L L    +T  DI      DL
Sbjct: 194 ISTAAFTGFPALTYLYLADNPIT--DIPANTFADL 226


>gi|290993148|ref|XP_002679195.1| predicted protein [Naegleria gruberi]
 gi|284092811|gb|EFC46451.1| predicted protein [Naegleria gruberi]
          Length = 311

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 1/177 (0%)

Query: 150 KF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
           KF S++  L  L++  NEI +    H+  +  L SLN+ +  IGDEG   ++ +  L  L
Sbjct: 124 KFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLL 183

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
           ++SD  +G  G++ +S +  L S N+S   I +   + ++ +  L SL++    I D+G+
Sbjct: 184 DISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGV 243

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
             ++ +  LT L++   R+ D GA  +   K LRSL I    L D GVK I ++  L
Sbjct: 244 KFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQL 300



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 100/183 (54%), Gaps = 1/183 (0%)

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
           E +  ++ +  L  L++SD ++G+ G +H+S +  L S+N+    I D   + ++ +  L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
             L++    I D G+  ++ +  LT  ++    I + GA  +   + L SL++    + D
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGD 240

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 373
           +GVK I ++  LT LN++ N  + D+  +LIS +  L SLN+S++ +   G++ +  +K 
Sbjct: 241 SGVKFISEMKQLTSLNIAIN-RVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQ 299

Query: 374 LRS 376
           LRS
Sbjct: 300 LRS 302



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 102/197 (51%), Gaps = 4/197 (2%)

Query: 159 VLNLGFNEITDECLVHLKGLTNLE---SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
           ++N+ FNE+  E   ++K ++ ++   SL++    IG+ G  +++ +  L  L + + ++
Sbjct: 107 IVNVKFNEMLLELRENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRI 166

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
           G  G + +S +  L  +++S   I D  ++ ++ +  L S N+    I + G  +++ + 
Sbjct: 167 GDEGAKFISEMQQLTLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQ 226

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            LT LD+    I DSG  ++   K L SL I    + D G K I ++  L  LN+S N  
Sbjct: 227 QLTSLDVSDNHIGDSGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDN-E 285

Query: 336 LTDKTLELISGLTGLVS 352
           L D+ ++ IS +  L S
Sbjct: 286 LGDEGVKFISEMKQLRS 302



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 1/162 (0%)

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
             ++ +S +  L S+++S   I +   + ++ +  L SLN+   +I D G   ++ +  L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
           T LD+    I D G  ++   K L S  I    + + G K I ++  LT L++S N ++ 
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDN-HIG 239

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           D  ++ IS +  L SLN++ +R+   G + +  +K LRSL +
Sbjct: 240 DSGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNI 281



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 94/180 (52%)

Query: 98  SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
             I ++  +++LT L++    +       +S +  L  LN+   ++ D+G +  S++  L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
            +L++  N I D+ +  +  +  L S N+    IG+ G  +++ +  L  L++SD  +G 
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGD 240

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
           SG++ +S +  L S+N++   + D   + ++ +  L+SLN+   ++ D G+  ++ +  L
Sbjct: 241 SGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQL 300



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 80/155 (51%)

Query: 77  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           K +S +  L SL I  +++ D G  ++  +Q+LTLL++    +    +  +S +  L   
Sbjct: 148 KHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLLDISDNHIGDKGVKFISEMKQLTSF 207

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           N++   + + G +  S++  L  L++  N I D  +  +  +  L SLN+    +GDEG 
Sbjct: 208 NISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKFISEMKQLTSLNIAINRVGDEGA 267

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
             ++ +  L+ L +SD ++G  G++ +S +  L S
Sbjct: 268 KLISEMKQLRSLNISDNELGDEGVKFISEMKQLRS 302



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 2/157 (1%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
            +++S +  LTSL+   NN I  +G K  + +  L  LD+        G+  +  + +L 
Sbjct: 147 AKHISEMKQLTSLNIC-NNRIGDEGAKFISEMQQLTLLDISDNHIGDKGVKFISEMKQLT 205

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           S NI   + I +   K +S +  L SL +S + + DSG+ ++  +++LT LN+    V  
Sbjct: 206 SFNIS-DDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKFISEMKQLTSLNIAINRVGD 264

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
                +S +  L  LN++  +L D+G +  S++  L+
Sbjct: 265 EGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQLR 301


>gi|270010132|gb|EFA06580.1| hypothetical protein TcasGA2_TC009492 [Tribolium castaneum]
          Length = 474

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 164/295 (55%), Gaps = 18/295 (6%)

Query: 103 LKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSK-IGSL 157
           ++G+  L  LNL GC        S + +    +L  L+L+ C Q++D    + ++ + +L
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 233

Query: 158 KVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNL-TGLCNLKCLELSDT 213
           +VL LG  + +T+  L+ +  GL  L+ LNL SC  +GD+G+ +L +G  +L+ L L D 
Sbjct: 234 EVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQDC 293

Query: 214 Q-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 270
           Q +    L+H +GLT+L SINLSF   I+D  L+ LA +++L+ LNL +   I+DTG+A 
Sbjct: 294 QKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAF 353

Query: 271 LTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKD-LSSLT 326
           L    + ++ LD+ F  +I D    ++ +   NLR+L +    L+D G+  I + L  L 
Sbjct: 354 LAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKIANSLHDLE 413

Query: 327 LLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
            LN+ Q   +TDK L  I+  L  L  +++   +RIT+ GL  +  L  L  L L
Sbjct: 414 TLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERIMKLPQLSVLNL 468



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 146/295 (49%), Gaps = 42/295 (14%)

Query: 54  LKGLMKLESLNIKWCNCITD--------SDMKPLSGL-----------------TNLKSL 88
           ++G+  LESLN++ C  + D        +D   L+ L                  +LK+L
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 233

Query: 89  QI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSL-SALGSLFYLNLNRC 141
           ++     CS VT+SG+  +  GL+KL  LNL  C  V    +  L S   SL +L L  C
Sbjct: 234 EVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQDC 293

Query: 142 Q-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 198
           Q LSD+  +  + + SL  +NL F   ITD  L HL  +TNL  LNL SC  I D G+  
Sbjct: 294 QKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAF 353

Query: 199 LT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLK 254
           L  G   +  L++S   ++G   L H+S GL NL ++ +S   +SD  L K+A  L  L+
Sbjct: 354 LAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKIANSLHDLE 413

Query: 255 SLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 306
           +LN+    ++TD GL  +  SL  L  +DL+G  RIT  G   +     L  L +
Sbjct: 414 TLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERIMKLPQLSVLNL 468



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 32/242 (13%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLN 64
           GL  L  L+ R    +  QG++  A G  +L  L L+ C ++    L +  GL  L S+N
Sbjct: 255 GLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISIN 314

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA- 121
           + +C  ITDS +K L+ +TNL+ L + SC  ++D+G+A+L +G  +++ L++  C     
Sbjct: 315 LSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGD 374

Query: 122 -ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
            A +     L +L  L ++ CQLSD+G  K +                         L +
Sbjct: 375 QALVHISQGLFNLRNLLMSACQLSDEGLAKIA-----------------------NSLHD 411

Query: 181 LESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFT 237
           LE+LN+  C  + D+GL  +   L  LKC++L   T++ + GL  +  L  L  +NL   
Sbjct: 412 LETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERIMKLPQLSVLNLGLW 471

Query: 238 GI 239
            +
Sbjct: 472 HV 473



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 24/177 (13%)

Query: 223 LSGLTNLESINLSF------TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-L 274
           + G+ NLES+NL         GIS   +   A   +L  L+L   +Q+TDT L  +   L
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFV---ADSPTLTELDLSLCKQVTDTSLTRIAQHL 230

Query: 275 TGLTHLDLFG-ARITDSG----AAYLRNFK--NLRSLEICGGGLTDAGVKHIKD-LSSLT 326
             L  L+L G + +T+SG    A  L+  K  NLRS    G    D G++H+     SL 
Sbjct: 231 KNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVG----DQGIQHLASGNPSLE 286

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 382
            L L     L+D+ L+  +GLT L+S+N+S    IT +GL+HL  + NLR L L SC
Sbjct: 287 HLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSC 343



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 97/172 (56%), Gaps = 7/172 (4%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKL 60
           ++ +GL++L S++     +IT  G+K  A + NL +L+L  C  I   G+  L +G  ++
Sbjct: 302 KHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRI 361

Query: 61  ESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLK-GLQKLTLLNLEGCP 118
            SL++ +C+ I D  +  +S GL NL++L +S  +++D G+A +   L  L  LN+  C 
Sbjct: 362 SSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKIANSLHDLETLNIGQCS 421

Query: 119 -VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEI 167
            VT   L +++ +L  L  ++L  C +++  G E+  K+  L VLNLG   +
Sbjct: 422 RVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERIMKLPQLSVLNLGLWHV 473



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 24/237 (10%)

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 225
           ++G+ NLESLNL  C  +GD G+ +        LT L    C +++DT +     R    
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLT----RIAQH 229

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLD 281
           L NLE + L   + +++  L  +A GL  LK LNL +   + D G+  L S    L HL 
Sbjct: 230 LKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLG 289

Query: 282 LFG-ARITDSGAAYLRNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
           L    +++D    +     +L S  L  C   +TD+G+KH+  +++L  LNL    N++D
Sbjct: 290 LQDCQKLSDEALKHATGLTSLISINLSFCVS-ITDSGLKHLAKMTNLRELNLRSCDNISD 348

Query: 339 KTLELIS-GLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 392
             +  ++ G + + SL+VS   +I    L H+ + L NLR+L + +C+++   + ++
Sbjct: 349 TGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKI 405


>gi|351713942|gb|EHB16861.1| F-box/LRR-repeat protein 14 [Heterocephalus glaber]
          Length = 399

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 176/337 (52%), Gaps = 47/337 (13%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDG 242
           D G+ +L G+          L+ L L D Q  +   +H+S G      +NLSF G ISD 
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSQHISRGRWRGRLLNLSFCGGISDA 243

Query: 243 SLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RN 297
            L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ + 
Sbjct: 244 GLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQG 302

Query: 298 FKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNV 355
              L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++
Sbjct: 303 LDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDL 362

Query: 356 SN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
              +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 YGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 399



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 125/233 (53%), Gaps = 26/233 (11%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS-CSKVTDSGIAYLKGL 106
           GL +L+SLN++ C  ++D  +  L+G+T         L+ L +  C K+TD      +G 
Sbjct: 167 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSQHISRGR 226

Query: 107 QKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKV--LNL 162
            +  LLNL  C  ++ A L  LS +GSL  LNL  C  +SD G    + +GSL++  L++
Sbjct: 227 WRGRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDV 285

Query: 163 GF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDT 213
            F +++ D+ L ++ +GL  L+SL+L SC I D+G+      + GL  L   +C+ ++D 
Sbjct: 286 SFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDK 345

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            +      HLS LT ++      T I+   L ++  L  LK LNL   Q+TD+
Sbjct: 346 GLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLPCLKVLNLGLWQMTDS 395



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 121/245 (49%), Gaps = 33/245 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C      G+G   +  +  L  L    C +++D+ +G    ++L G
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200

Query: 276 --GLTHLDLFG-ARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             GL  L L    ++TD      R     R  +L  CGG ++DAG+ H+  + SL  LNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSQHISRGRWRGRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNL 259

Query: 331 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 387
               N++D   + L  G   L  L+VS   ++    L ++ + L  L+SL+L SC ++ +
Sbjct: 260 RSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 319

Query: 388 DIKRL 392
            I R+
Sbjct: 320 GINRM 324


>gi|449269519|gb|EMC80282.1| F-box/LRR-repeat protein 14, partial [Columba livia]
          Length = 344

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 172/360 (47%), Gaps = 73/360 (20%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---------CSKVTDSGIA--- 101
           ++G+  +ESLN+  C  +TD+      GL +    +IS         C ++TDS +    
Sbjct: 19  IQGMADIESLNLSGCYNLTDN------GLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA 72

Query: 102 -YLKGLQKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
            YLKGL+   +L L GC        L     L  L  LNL  C+                
Sbjct: 73  QYLKGLE---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCR---------------- 113

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
                   ++D  + HL G+T   +          EG + L  L    C +LSD      
Sbjct: 114 -------HLSDVGIGHLAGMTRSAA----------EGCLGLEQLTLQDCQKLSDLS---- 152

Query: 219 GLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTS 273
            L+HL+ GL  L  +NLSF G ISD  L  L+ +SSL+SLNL +   I+DTG+   A+ S
Sbjct: 153 -LKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGS 211

Query: 274 LTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNL 330
           L  L+ LD+ F  ++ D   AY+ +    LRSL +C   ++D G+ + ++ +  L  LN+
Sbjct: 212 LR-LSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNI 270

Query: 331 SQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
            Q   +TDK LELI+  L+ L  +++   +RIT  GL  +  L  L+ L L   ++T ++
Sbjct: 271 GQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWEMTESE 330



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 126/246 (51%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ ++ESLNL  C      G+G   +  ++ L +L    C +++D+ +G    ++L G
Sbjct: 19  IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA-QYLKG 77

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 78  LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 133

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    +++D    +L R    LR L +  CGG ++DAG+ H+  +SSL  LN
Sbjct: 134 CLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGG-ISDAGLLHLSHMSSLRSLN 192

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  LRSL+L SC ++ 
Sbjct: 193 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISD 252

Query: 387 NDIKRL 392
             I R+
Sbjct: 253 EGINRM 258



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 117/222 (52%), Gaps = 18/222 (8%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C ++    L +L +G
Sbjct: 100 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARG 159

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNL 114
           L +L  LN+ +C  I+D+ +  LS +++L+SL + SC  ++D+GI +L  G  +L+ L++
Sbjct: 160 LGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDV 219

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDE 170
             C  V    L  ++  L  L  L+L  C +SD+G  +  + +  L+ LN+G    ITD+
Sbjct: 220 SFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDK 279

Query: 171 CLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL 210
            L  + + L+ L  ++L  C  I   GL  +T L  LK L L
Sbjct: 280 GLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNL 321



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 7/170 (4%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLN 64
           GL  L  L+      I+  G+   + + +L  L+L  C  I   G+++L  G ++L  L+
Sbjct: 159 GLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 218

Query: 65  IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTA 121
           + +C+ + D  +  ++ GL  L+SL +    ++D GI   ++ +  L  LN+  C  +T 
Sbjct: 219 VSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITD 278

Query: 122 ACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 169
             L+ ++  L  L  ++L  C +++  G E+ +++  LKVLNLG  E+T+
Sbjct: 279 KGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWEMTE 328


>gi|343416336|emb|CCD20397.1| leucine-rich repeat protein (LRRP), protein [Trypanosoma vivax
           Y486]
          Length = 1138

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 171/391 (43%), Gaps = 39/391 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS L +L SL  R    I  +G   F GL  L  L L      +  L +L    +L+ L 
Sbjct: 440 LSDLQSLVSLDIRECMNIV-EGWNCFMGLRMLKMLHLLEARISNDSLRSLAACTQLQVLV 498

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           +  CN ITD+ +  L     L+ L +  CS ++  G AYL  L  L  + L G  +  + 
Sbjct: 499 LHRCNNITDTSL--LGSFQYLQVLDVRECSGIS-QGCAYLNNLPYLRAMQLRGLVMDGSF 555

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           +  L+    +  L L  C   DD                         +  L+ L  LE 
Sbjct: 556 VHRLTNQRHIRVLMLQPCVFIDD-------------------------ISPLQHLRELEV 590

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDG 242
           L+L +C   + G   L GL  LK L +   + G+S LR L   T+L S+ L S  GISD 
Sbjct: 591 LSLCNCERIERGWDALAGLEKLKDLYILKGRFGNSFLRALQRNTHLRSLALYSCPGISDI 650

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           S   L  +  L+ L++D       G   L  L GL  L L   ++  S A+ LR+ ++LR
Sbjct: 651 S--SLGDVRGLEMLDIDNCASIRDGWYGLAKLKGLKELYLRQVKLPRSFASVLRSCESLR 708

Query: 303 SLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
            LEI  C    + + +  I  L  L +     NCN +   L  +  L  LV+L++S + +
Sbjct: 709 VLEIFACKPVFSVSPLGTINGLEVLVI----DNCNASATELNGLLQLKCLVALHLSKAVL 764

Query: 361 TSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   LR L+   +L+S+  + CKV    + R
Sbjct: 765 SRRVLRGLRSCVHLQSVCFDRCKVEKGAVFR 795



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 157/357 (43%), Gaps = 47/357 (13%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           +L  L +++CN ITD  + PL  +  L+ L I        G + L  L+ L   +L    
Sbjct: 351 RLRVLVLEYCNNITD--ISPLGYIRGLEVLGICECMSVKGGWSCLARLRMLKQFHLRDSR 408

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
                L S++A   L  L L+RC                       + ITD  +  L  L
Sbjct: 409 TGNIALKSITACQQLQALVLHRC-----------------------SNITD--ISPLSDL 443

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-T 237
            +L SL++  C    EG     GL  LK L L + ++ +  LR L+  T L+ + L    
Sbjct: 444 QSLVSLDIRECMNIVEGWNCFMGLRMLKMLHLLEARISNDSLRSLAACTQLQVLVLHRCN 503

Query: 238 GISDGSLRKLAGLSSLKSLN-LDARQIT--DTGLAALTSLTGLTHLDLFGARITDSGAAY 294
            I+D SL     L S + L  LD R+ +    G A L +L  L  + L G  +  S    
Sbjct: 504 NITDTSL-----LGSFQYLQVLDVRECSGISQGCAYLNNLPYLRAMQLRGLVMDGSFVHR 558

Query: 295 LRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
           L N +++R L +      D  + ++H+++L  L+L N    C   ++  + ++GL  L  
Sbjct: 559 LTNQRHIRVLMLQPCVFIDDISPLQHLRELEVLSLCN----CERIERGWDALAGLEKLKD 614

Query: 353 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-----DIKRLQSRDLPNLVSFR 404
           L +   R  ++ LR L+   +LRSL L SC   ++     D++ L+  D+ N  S R
Sbjct: 615 LYILKGRFGNSFLRALQRNTHLRSLALYSCPGISDISSLGDVRGLEMLDIDNCASIR 671



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 160/392 (40%), Gaps = 64/392 (16%)

Query: 44  CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAY 102
           C RI  G   L GL KL+ L I       +S ++ L   T+L+SL + SC  ++D  I+ 
Sbjct: 596 CERIERGWDALAGLEKLKDLYILKGR-FGNSFLRALQRNTHLRSLALYSCPGISD--ISS 652

Query: 103 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162
           L  ++ L +L+++ C         L+ L  L  L L + +L            SL+VL +
Sbjct: 653 LGDVRGLEMLDIDNCASIRDGWYGLAKLKGLKELYLRQVKLPRSFASVLRSCESLRVLEI 712

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL---ELSDTQVGSSG 219
            F       +  L  +  LE L +D+C   +     L GL  LKCL    LS   +    
Sbjct: 713 -FACKPVFSVSPLGTINGLEVLVIDNC---NASATELNGLLQLKCLVALHLSKAVLSRRV 768

Query: 220 LRHLSGLTNLESINLSFTGISDGSL-RKLAGLSS-------------------------- 252
           LR L    +L+S+      +  G++ R   GLS                           
Sbjct: 769 LRGLRSCVHLQSVCFDRCKVEKGAVFRSHHGLSVVDFTSPSKKKVNAHYLFSEEKPSEFR 828

Query: 253 ----------LKSLNLDAR-------QITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
                     L +L L+         + T T ++ L  +  L  LDL G      G   L
Sbjct: 829 LQMMKLSRDFLNALKLNTHLRTLVLYRCTFTNVSPLGDIKTLEVLDLDGCSRIKKGLDKL 888

Query: 296 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL---TGLVS 352
                L++L +    + ++ +K +  L  L  L+L++ C +TD     +SGL     L +
Sbjct: 889 HTLVGLKTLRLTSRSVRNSFLKGLAKLKHLRSLSLTR-CGITD-----VSGLGCIHWLEA 942

Query: 353 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           L++S     + G R +  +K+L+ LTL  C++
Sbjct: 943 LDLSYCTKINKGSRCIGEIKSLKELTLRGCRI 974



 Score = 44.7 bits (104), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 178  LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
            +  LE L+LD C    +GL  L  L  LK L L+   V +S L+ L+ L +L S++L+  
Sbjct: 867  IKTLEVLDLDGCSRIKKGLDKLHTLVGLKTLRLTSRSVRNSFLKGLAKLKHLRSLSLTRC 926

Query: 238  GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            GI+D S   L  +  L++L+L      + G   +  +  L  L L G RI       L  
Sbjct: 927  GITDVS--GLGCIHWLEALDLSYCTKINKGSRCIGEIKSLKELTLRGCRIYYPLFYALDG 984

Query: 298  FKNLR--SLEICGGGLTDA 314
               LR  SL+ C  GLTD 
Sbjct: 985  SDTLRKLSLKYC-EGLTDV 1002


>gi|51850103|dbj|BAD42392.1| leucine-rich repeat protein [Ralstonia solanacearum]
          Length = 621

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 177/405 (43%), Gaps = 20/405 (4%)

Query: 7   GLSNLTSLSFRRNN----AITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMK 59
           GL++L ++  +  N     I  +G +  A   +LV L L  C    R    L   + +  
Sbjct: 182 GLAHLAAMPLKSLNLNGIEIGVEGARTLATSKSLVSLSLIGCGIGDRAAQALAASRSIRS 241

Query: 60  LE-SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           L+ S+N+  C+        PL       SL +  +++ D G   L   Q LT L L    
Sbjct: 242 LDLSVNMIGCDGAQALADAPLV------SLNLYSNEIGDDGARALATSQTLTSLELRRNG 295

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +  A   + +    L  LNL    +   G    +   SL  L+LG N + D+    L G 
Sbjct: 296 IGNAGAGAFANNTVLRKLNLANNMIDKRGARVLAGNTSLTELDLGGNRLGDKGARALAGN 355

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            +L SL +D   I DEG+  L     L+ L+LS   VG  G   L G T L  +NLS  G
Sbjct: 356 RSLLSLKVDHNEISDEGVQALAQHATLRSLDLSFNFVGLQGAGALGGNTRLSELNLSLCG 415

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           I+  S   LA   SL SL L+  +I D G  AL   + LT LDL    I ++GA  L   
Sbjct: 416 INSYSASALARNKSLASLYLNGNRIGDDGARALAKNSTLTLLDLSRNNIQNAGAEALGGN 475

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
           + L SL++ G G+ D G   +     LT L+LSQN   ++    L    T L  L++S +
Sbjct: 476 QALISLKLAGNGIDDDGAAALARHPRLTTLDLSQNRIGSEGARHLAQSAT-LAELDLSEN 534

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
           RI   G + L       S  L + KV  N I    +R L +  S 
Sbjct: 535 RIGPEGAKALS-----LSTVLTTLKVIDNAIGEDGARALADSTSL 574



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 129/277 (46%), Gaps = 1/277 (0%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           NN I  +G +  AG  +L +LDL        G   L G   L SL +   N I+D  ++ 
Sbjct: 317 NNMIDKRGARVLAGNTSLTELDLGGNRLGDKGARALAGNRSLLSLKVD-HNEISDEGVQA 375

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L+    L+SL +S + V   G   L G  +L+ LNL  C + +    +L+   SL  L L
Sbjct: 376 LAQHATLRSLDLSFNFVGLQGAGALGGNTRLSELNLSLCGINSYSASALARNKSLASLYL 435

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           N  ++ DDG    +K  +L +L+L  N I +     L G   L SL L   GI D+G   
Sbjct: 436 NGNRIGDDGARALAKNSTLTLLDLSRNNIQNAGAEALGGNQALISLKLAGNGIDDDGAAA 495

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L     L  L+LS  ++GS G RHL+    L  ++LS   I     + L+  + L +L +
Sbjct: 496 LARHPRLTTLDLSQNRIGSEGARHLAQSATLAELDLSENRIGPEGAKALSLSTVLTTLKV 555

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
               I + G  AL   T LT LD     I ++GA  L
Sbjct: 556 IDNAIGEDGARALADSTSLTSLDARRNGIGEAGAQVL 592



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 123/289 (42%), Gaps = 24/289 (8%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I ++     +  T L+ L ++ + +   G   L G   LT L+L G  +      +L+
Sbjct: 294 NGIGNAGAGAFANNTVLRKLNLANNMIDKRGARVLAGNTSLTELDLGGNRLGDKGARALA 353

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
              SL  L ++  ++SD+G +  ++  +L+ L+L FN +  +    L G T L  LNL  
Sbjct: 354 GNRSLLSLKVDHNEISDEGVQALAQHATLRSLDLSFNFVGLQGAGALGGNTRLSELNLSL 413

Query: 189 CGI------------------------GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           CGI                        GD+G   L     L  L+LS   + ++G   L 
Sbjct: 414 CGINSYSASALARNKSLASLYLNGNRIGDDGARALAKNSTLTLLDLSRNNIQNAGAEALG 473

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
           G   L S+ L+  GI D     LA    L +L+L   +I   G   L     L  LDL  
Sbjct: 474 GNQALISLKLAGNGIDDDGAAALARHPRLTTLDLSQNRIGSEGARHLAQSATLAELDLSE 533

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            RI   GA  L     L +L++    + + G + + D +SLT L+  +N
Sbjct: 534 NRIGPEGAKALSLSTVLTTLKVIDNAIGEDGARALADSTSLTSLDARRN 582


>gi|317420071|emb|CBN82107.1| Uncharacterized protein [Dicentrarchus labrax]
          Length = 889

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 158/306 (51%), Gaps = 22/306 (7%)

Query: 106 LQKLTLLNLEGCPV-----------TAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSK 153
           L+  TL    GCP+           T   L  L A  +L +L+L N   ++D G   FS 
Sbjct: 484 LRPRTLELFFGCPLQKFVLNCYPYSTNELLRQLRAFTALKHLSLVNSPLITDSGLSIFSS 543

Query: 154 IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL--TGLCNLKCLEL 210
           +  L+ LNL   +++TD CL H+ GL +L  L+LD   + D G+V    +    L  L L
Sbjct: 544 LAKLQYLNLASCSKLTDSCLQHITGLKSLCFLSLDQTKVTDAGMVLYLQSAPSCLSQLSL 603

Query: 211 SDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 269
           + T V  + L  L   +  L  +++  T + D S   LA LS+L++LNLD   +T++ L 
Sbjct: 604 NQTAVTEASLVVLPTCVPQLRLLSIKQTKVKDVS--ALARLSNLQTLNLDVTGVTESSLE 661

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIKDLSSLT 326
            L+S   L+ L L G  + D G   L+   +LR  ++   G   +TD+G+  +  LS L 
Sbjct: 662 HLSSHPTLSSLSLAGIPVAD-GNQALQIISDLRLTQLTLPGRHTVTDSGLSFLSRLSLLL 720

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
            L+L+    +TD+ +  +S +T L  L++SN+++T AGL  L+ L+ L+ L L+   VT+
Sbjct: 721 ELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVTDAGLPSLRGLQELQELCLDRTAVTS 780

Query: 387 NDIKRL 392
             +  L
Sbjct: 781 RGVADL 786



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 170/373 (45%), Gaps = 54/373 (14%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           ++AF  L +L  ++    T    GL     L KL+ LN+  C+ +TDS ++ ++GL +L 
Sbjct: 516 LRAFTALKHLSLVNSPLIT--DSGLSIFSSLAKLQYLNLASCSKLTDSCLQHITGLKSLC 573

Query: 87  SLQISCSKVTDSGIA-YLKGLQK-LTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQL 143
            L +  +KVTD+G+  YL+     L+ L+L    VT A L  L   +  L  L++ + ++
Sbjct: 574 FLSLDQTKVTDAGMVLYLQSAPSCLSQLSLNQTAVTEASLVVLPTCVPQLRLLSIKQTKV 633

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
            D      +++ +L+ LNL    +T+  L HL     L SL+L    + D G   L  + 
Sbjct: 634 KD--VSALARLSNLQTLNLDVTGVTESSLEHLSSHPTLSSLSLAGIPVAD-GNQALQIIS 690

Query: 204 NLKCLELS----------------------------DTQVGSSGLRHLSGLTNLESINLS 235
           +L+  +L+                             TQV   G+  LS +T L+ ++LS
Sbjct: 691 DLRLTQLTLPGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLSTMTRLKKLSLS 750

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
            T ++D  L  L GL  L+ L LD   +T  G+A L  +T L HL + G   T  G   +
Sbjct: 751 NTQVTDAGLPSLRGLQELQELCLDRTAVTSRGVADL--ITCLPHLQVLGLASTQVGDTVV 808

Query: 296 R----NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-----G 346
           R        L  L +    +TD G+K +K       ++L+Q  NL    + LI       
Sbjct: 809 RRGVIRCNQLVKLNLSRTRITDHGLKCLKH------MHLAQ-VNLDGTGVSLIGIANLLS 861

Query: 347 LTGLVSLNVSNSR 359
            T + S+  SN+R
Sbjct: 862 FTNISSIRASNTR 874


>gi|320170955|gb|EFW47854.1| hypothetical protein CAOG_05792 [Capsaspora owczarzaki ATCC 30864]
          Length = 727

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 156/360 (43%), Gaps = 8/360 (2%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKL 60
           +  +GL+ LT LS   N  IT+     F G+  L  L L   + T I  G      L  L
Sbjct: 86  DAFTGLTALTYLSLYAN-PITSIPAGTFTGVTALTYLSLSSNQITSIPAGA--FTDLTAL 142

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            SL + + N IT       + LT L  L +  +++T    A+  GL  LT L+L    +T
Sbjct: 143 RSLFL-YANLITSISANAFTSLTALTYLHLYGNQITSISNAF-TGLTALTELHLYNNHIT 200

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
           +   ++ + L +L  L+L   Q++    + F+ + +L  L L  N+IT        GLT 
Sbjct: 201 SISANAFTDLTALTELSLISNQITSIPADTFTGLTALTYLYLNSNQITSIPADTFTGLTA 260

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  L+L+S  I        T L  L  L  +   + S      +GLT L  +  S   I+
Sbjct: 261 LTYLSLNSNSITSIAATAFTDLTALTYLSFNSNSITSISANAFAGLTALTYLFFSSNLIT 320

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
             S    AGL++L  L+L + QIT       T +T LT+L L   +IT   A        
Sbjct: 321 SISANAFAGLTALTYLSLGSNQITSIPAGTFTGVTALTYLSLDSNQITSIPADTFTGLTA 380

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L  L +    +T        +L++LT L L  N  +T     L  GL   ++L+ SN  +
Sbjct: 381 LTYLYLGTNQITSLPSSSFTNLTALTYLVLQSN-PITTLPPGLFKGLPNDLALSYSNPYL 439



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 162/382 (42%), Gaps = 7/382 (1%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           SG+   T+  +  +N IT+    AF GL  +  + LD    T I        GL  L  L
Sbjct: 40  SGIPTDTTKLYINSNPITSIPTNAFTGLTALTFLSLDYNLITSIPADA--FTGLTALTYL 97

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           ++ + N IT       +G+T L  L +S +++T         L  L  L L    +T+  
Sbjct: 98  SL-YANPITSIPAGTFTGVTALTYLSLSSNQITSIPAGAFTDLTALRSLFLYANLITSIS 156

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
            ++ ++L +L YL+L   Q++      F+ + +L  L+L  N IT         LT L  
Sbjct: 157 ANAFTSLTALTYLHLYGNQITSIS-NAFTGLTALTELHLYNNHITSISANAFTDLTALTE 215

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           L+L S  I        TGL  L  L L+  Q+ S      +GLT L  ++L+   I+  +
Sbjct: 216 LSLISNQITSIPADTFTGLTALTYLYLNSNQITSIPADTFTGLTALTYLSLNSNSITSIA 275

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
                 L++L  L+ ++  IT     A   LT LT+L      IT   A        L  
Sbjct: 276 ATAFTDLTALTYLSFNSNSITSISANAFAGLTALTYLFFSSNLITSISANAFAGLTALTY 335

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           L +    +T         +++LT L+L  N  +T    +  +GLT L  L +  ++ITS 
Sbjct: 336 LSLGSNQITSIPAGTFTGVTALTYLSLDSN-QITSIPADTFTGLTALTYLYLGTNQITSL 394

Query: 364 GLRHLKPLKNLRSLTLESCKVT 385
                  L  L  L L+S  +T
Sbjct: 395 PSSSFTNLTALTYLVLQSNPIT 416



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 137/320 (42%), Gaps = 6/320 (1%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N IT       +GLT L  L +  + +T        GL  LT L+L   P+T+    + +
Sbjct: 54  NPITSIPTNAFTGLTALTFLSLDYNLITSIPADAFTGLTALTYLSLYANPITSIPAGTFT 113

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            + +L YL+L+  Q++      F+ + +L+ L L  N IT         LT L  L+L  
Sbjct: 114 GVTALTYLSLSSNQITSIPAGAFTDLTALRSLFLYANLITSISANAFTSLTALTYLHLYG 173

Query: 189 CGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
             I         LT L  L       T + ++    L+ LT L  I+   T I   +   
Sbjct: 174 NQITSISNAFTGLTALTELHLYNNHITSISANAFTDLTALTELSLISNQITSIPADTFT- 232

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
             GL++L  L L++ QIT       T LT LT+L L    IT   A    +   L  L  
Sbjct: 233 --GLTALTYLYLNSNQITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDLTALTYLSF 290

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
               +T         L++LT L  S N  +T  +    +GLT L  L++ +++ITS    
Sbjct: 291 NSNSITSISANAFAGLTALTYLFFSSNL-ITSISANAFAGLTALTYLSLGSNQITSIPAG 349

Query: 367 HLKPLKNLRSLTLESCKVTA 386
               +  L  L+L+S ++T+
Sbjct: 350 TFTGVTALTYLSLDSNQITS 369



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 134/304 (44%), Gaps = 2/304 (0%)

Query: 83  TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 142
           T+   L I+ + +T        GL  LT L+L+   +T+   D+ + L +L YL+L    
Sbjct: 44  TDTTKLYINSNPITSIPTNAFTGLTALTFLSLDYNLITSIPADAFTGLTALTYLSLYANP 103

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           ++      F+ + +L  L+L  N+IT         LT L SL L +  I        T L
Sbjct: 104 ITSIPAGTFTGVTALTYLSLSSNQITSIPAGAFTDLTALRSLFLYANLITSISANAFTSL 163

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
             L  L L   Q+ S      +GLT L  ++L    I+  S      L++L  L+L + Q
Sbjct: 164 TALTYLHLYGNQITSIS-NAFTGLTALTELHLYNNHITSISANAFTDLTALTELSLISNQ 222

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
           IT       T LT LT+L L   +IT   A        L  L +    +T        DL
Sbjct: 223 ITSIPADTFTGLTALTYLYLNSNQITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDL 282

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
           ++LT L+ + N ++T  +    +GLT L  L  S++ ITS        L  L  L+L S 
Sbjct: 283 TALTYLSFNSN-SITSISANAFAGLTALTYLFFSSNLITSISANAFAGLTALTYLSLGSN 341

Query: 383 KVTA 386
           ++T+
Sbjct: 342 QITS 345


>gi|299067411|emb|CBJ38610.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
           solanacearum CMR15]
          Length = 620

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 174/416 (41%), Gaps = 31/416 (7%)

Query: 7   GLSNLTSLSFRRNN----AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           GL++L  +  +  N     I  +G +  A   +LV L L  C         L     ++S
Sbjct: 181 GLAHLAEMPLKSLNLTGIEIGVEGARTLAASTSLVSLTLIGCGIGDRAAQALAASQSIKS 240

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++   N I     + L+    L SL +  +++ D G   L   + LT L+     +  A
Sbjct: 241 LDLS-VNMIGRDGAQALAA-APLTSLNLYYNEIGDDGAGALAASKTLTSLDASKNGIGNA 298

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             ++L+    L  LNL    +   G    +   SL  L+LG N + D   + L G  +L 
Sbjct: 299 GAEALAKNTVLRELNLAHNMIGTPGVRALAGNTSLTELDLGGNRLGDAGALELAGNRSLL 358

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SL +D   IG  G   L     L  L+LS   +G  G   L   T L  +NLSF GI   
Sbjct: 359 SLKVDHNEIGGGGAQALARHATLTSLDLSYNAIGLWGAGALGANTTLSVLNLSFCGIDSH 418

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           S   LA   SL  L L+   I D G   L     LT LDL    I ++GA  L   + L 
Sbjct: 419 SACALACNKSLAELYLNGNWIGDYGALELAKNRTLTLLDLSRNGIRNAGAEALGGNQALT 478

Query: 303 SLEICGGGLTD------------------------AGVKHIKDLSSLTLLNLSQNCNLTD 338
           SL++ G G+ D                         G +H+   ++L  L+LSQN  +  
Sbjct: 479 SLKLAGNGIDDDGAAALARHPRLTTLDLSRNRIGAEGARHLAQSATLAELDLSQN-RIGP 537

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
              E +S  T L++LNVS++ I  AG R L    +L SL      +  +  K L++
Sbjct: 538 DGAEALSQSTALITLNVSHNAIGEAGARSLADSASLTSLDARRNGIGEDGAKVLEA 593



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 144/341 (42%), Gaps = 4/341 (1%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 70
           LTSL+   N  I   G  A A    L  LD  +    + G   L     L  LN+   N 
Sbjct: 261 LTSLNLYYNE-IGDDGAGALAASKTLTSLDASKNGIGNAGAEALAKNTVLRELNLA-HNM 318

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I    ++ L+G T+L  L +  +++ D+G   L G + L  L ++   +      +L+  
Sbjct: 319 IGTPGVRALAGNTSLTELDLGGNRLGDAGALELAGNRSLLSLKVDHNEIGGGGAQALARH 378

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            +L  L+L+   +   G        +L VLNL F  I       L    +L  L L+   
Sbjct: 379 ATLTSLDLSYNAIGLWGAGALGANTTLSVLNLSFCGIDSHSACALACNKSLAELYLNGNW 438

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           IGD G + L     L  L+LS   + ++G   L G   L S+ L+  GI D     LA  
Sbjct: 439 IGDYGALELAKNRTLTLLDLSRNGIRNAGAEALGGNQALTSLKLAGNGIDDDGAAALARH 498

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
             L +L+L   +I   G   L     L  LDL   RI   GA  L     L +L +    
Sbjct: 499 PRLTTLDLSRNRIGAEGARHLAQSATLAELDLSQNRIGPDGAEALSQSTALITLNVSHNA 558

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTD--KTLELISGLTG 349
           + +AG + + D +SLT L+  +N    D  K LE  + LTG
Sbjct: 559 IGEAGARSLADSASLTSLDARRNGIGEDGAKVLEANTRLTG 599


>gi|300693896|ref|YP_003749869.1| type III effector protein [Ralstonia solanacearum PSI07]
 gi|299075933|emb|CBJ35242.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
           solanacearum PSI07]
          Length = 1002

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 178/397 (44%), Gaps = 11/397 (2%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL--VNLKGLMK-LESLNIK 66
           NL   +  R   +T     AF+ L N   L+       HG L   +LK L   +  L++ 
Sbjct: 526 NLRDAAVARTKHLTVWDKAAFSRLGNYSALE---SLSFHGNLTIADLKALPPSVRHLDLS 582

Query: 67  WCN--CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
            C    ++ + +  L+G   L+SL +S + + D G   L     LT LNL G  ++ A  
Sbjct: 583 GCTGTAVSGAGLAYLAG-RKLESLDLSDTPIGDRGAQLLASSTSLTSLNLSGNEISDAGA 641

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            + +   SL  LNL    +SD G E   +   L  L++  N I +  +  L    +L SL
Sbjct: 642 AAFADNTSLTSLNLRGNHISDAGAEALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSL 701

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           NL S  I DEG+  L     L+ L++S  + G+     L+    L S+  +   +++   
Sbjct: 702 NLCSTWIEDEGVEALASNTVLRSLDISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVA 761

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           ++LA + SL +L L +  I D G+ A+     L  LDL    I   G   L   + L SL
Sbjct: 762 QQLASIRSLTALELSSNLIDDAGVQAIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSL 821

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           ++   G  D G   +    SLTLL L  N  +  + +++++    L+SL++S + I    
Sbjct: 822 DVSCIGCGDRGGLVLSKSRSLTLLKLGSN-GIASEGVQILAANRSLISLDLSGNTIDVVA 880

Query: 365 LRHLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPNL 400
            R L     L SL   SC +    +  L +SR L +L
Sbjct: 881 ARALAKNPRLASLNASSCGLDDAAVSALAESRSLTSL 917



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 172/407 (42%), Gaps = 58/407 (14%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT--RIHG-GLVNLKGLMKLE 61
           L   S L SLSF  N  +T   +KA    +    LDL  CT   + G GL  L G  KLE
Sbjct: 549 LGNYSALESLSFHGN--LTIADLKALPPSVR--HLDLSGCTGTAVSGAGLAYLAG-RKLE 603

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC---- 117
           SL++     I D   + L+  T+L SL +S ++++D+G A       LT LNL G     
Sbjct: 604 SLDLS-DTPIGDRGAQLLASSTSLTSLNLSGNEISDAGAAAFADNTSLTSLNLRGNHISD 662

Query: 118 --------------------PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
                               P+    + +L++  SL  LNL    + D+G E  +    L
Sbjct: 663 AGAEALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCSTWIEDEGVEALASNTVL 722

Query: 158 KVLNLGFNE------------------------ITDECLVHLKGLTNLESLNLDSCGIGD 193
           + L++  N                         +T+     L  + +L +L L S  I D
Sbjct: 723 RSLDISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTALELSSNLIDD 782

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
            G+  +    +L+ L+LS   +G  GL  L+    L S+++S  G  D     L+   SL
Sbjct: 783 AGVQAIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDVSCIGCGDRGGLVLSKSRSL 842

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
             L L +  I   G+  L +   L  LDL G  I    A  L     L SL     GL D
Sbjct: 843 TLLKLGSNGIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRLASLNASSCGLDD 902

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           A V  + +  SLT L++S+N  L       ++G   L SLN+S++RI
Sbjct: 903 AAVSALAESRSLTSLDVSKN-RLFSPGARALAGNRVLTSLNISHNRI 948



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 149/327 (45%), Gaps = 6/327 (1%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI--K 66
           ++LTSL+ R N+ I+  G +A      L  LD+      + G+  L     L SLN+   
Sbjct: 648 TSLTSLNLRGNH-ISDAGAEALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCST 706

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
           W   I D  ++ L+  T L+SL IS ++      A L   + L  L    C +T      
Sbjct: 707 W---IEDEGVEALASNTVLRSLDISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQ 763

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           L+++ SL  L L+   + D G +   +  SL+ L+L  N I    L  L     L SL++
Sbjct: 764 LASIRSLTALELSSNLIDDAGVQAIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDV 823

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
              G GD G + L+   +L  L+L    + S G++ L+   +L S++LS   I   + R 
Sbjct: 824 SCIGCGDRGGLVLSKSRSLTLLKLGSNGIASEGVQILAANRSLISLDLSGNTIDVVAARA 883

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           LA    L SLN  +  + D  ++AL     LT LD+   R+   GA  L   + L SL I
Sbjct: 884 LAKNPRLASLNASSCGLDDAAVSALAESRSLTSLDVSKNRLFSPGARALAGNRVLTSLNI 943

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQN 333
               +   G   + + +SLT L+   N
Sbjct: 944 SHNRIGFHGAAALAESTSLTFLDARAN 970



 Score = 45.4 bits (106), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 122/286 (42%), Gaps = 26/286 (9%)

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-----DECLVHLKGLTNLESLNLDS 188
           +Y NL    L  +      K     +L+L  +E T      + + +L  L  LESLN+  
Sbjct: 104 YYPNLESVHLKGNFTLADLKALPATLLHLDLSECTGSARSSKAIAYLASLP-LESLNVKG 162

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             IGD G   L    +LK L ++   +G++G  +L+    L S++L+   I D  ++ LA
Sbjct: 163 AQIGDHGARLLAANPSLKTLNMAIGGIGAAGAANLAESRTLMSLDLTQNKIGDKGVQALA 222

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------------------FGARITDS 290
              SL +L +    +TD GL AL     LT LDL                      IT  
Sbjct: 223 ASRSLTNLTVSNCLVTDIGLEALARSRTLTSLDLGNLVSATYDEAEQADFDRTANDITVK 282

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
           G   L    +L SL + G    DAGV  +    +LT LN++   N+   +   ++    L
Sbjct: 283 GTRALVQSPSLTSLSVQGNLCGDAGVLELAKSRTLTHLNVA-FTNMGPVSARALARNPVL 341

Query: 351 VSLNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 395
            SLNV  N  I + G   L   ++L SL      + A  +  L+++
Sbjct: 342 TSLNVRWNYDIGTEGALELTKSESLISLDARDASIGAEGVLALEAK 387


>gi|290987030|ref|XP_002676226.1| predicted protein [Naegleria gruberi]
 gi|284089827|gb|EFC43482.1| predicted protein [Naegleria gruberi]
          Length = 298

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 149/324 (45%), Gaps = 32/324 (9%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGC-PVTAACLDSLSALGSLFYLNLN 139
           L NL  L+IS  ++ D G+ Y+  L+ L +LN+ + C   T   L+S+S +  L  L   
Sbjct: 1   LENLTFLEIS--RIGDMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCL--- 55

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
                        K+  LK+ N G N I+          T L  L+  +C + D+GL +L
Sbjct: 56  -------------KVRDLKICNEGVNWISQS--------TQLTDLDFTTCTL-DQGLESL 93

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
             +  L  L L      ++ +  +  LT L S+N+   GI+D     +  L+ L  L++ 
Sbjct: 94  CEMKRLTSLWLPSCPKYANKVELIGQLTQLTSLNICARGINDQDGVHIKELTQLTELDIS 153

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
             QI    + +++ LT L  L++    I D GA  +     LR L++    +TDAGV  I
Sbjct: 154 LNQIVFETIESISQLTNLIILNMSYCNIGDDGACLIGELSQLRELKVLKNLITDAGVISI 213

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             L  L  L++S N  ++    E ISGL  L  LN+  + I   G   +  L  LRSL  
Sbjct: 214 SQLKHLIKLDISNN-EISKTGAESISGLRNLTYLNIGYNLIGDEGCDFICDLSLLRSLHA 272

Query: 380 ESCKVTANDIKRLQSRDLPNLVSF 403
           +   +++  IK +  R+L  L S 
Sbjct: 273 DKTGISSEGIKSI--RNLRKLTSL 294



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 153/330 (46%), Gaps = 39/330 (11%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERC-TRIHGGLVNLKGLMKLESLNI 65
           L NLT L   R   I   G+K  + L NL  L++ + C T    GL ++  + KL  L +
Sbjct: 1   LENLTFLEISR---IGDMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCLKV 57

Query: 66  ---KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
              K CN      +  +S  T L  L  +   + D G+  L  +++LT L L  CP  A 
Sbjct: 58  RDLKICN----EGVNWISQSTQLTDLDFTTCTL-DQGLESLCEMKRLTSLWLPSCPKYAN 112

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            ++ +  L  L  LN+    ++D       ++  L  L++  N+I  E +  +  LTNL 
Sbjct: 113 KVELIGQLTQLTSLNICARGINDQDGVHIKELTQLTELDISLNQIVFETIESISQLTNLI 172

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISD 241
            LN+  C IGD+G           CL      +G  S LR L  L NL         I+D
Sbjct: 173 ILNMSYCNIGDDG----------ACL------IGELSQLRELKVLKNL---------ITD 207

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             +  ++ L  L  L++   +I+ TG  +++ L  LT+L++    I D G  ++ +   L
Sbjct: 208 AGVISISQLKHLIKLDISNNEISKTGAESISGLRNLTYLNIGYNLIGDEGCDFICDLSLL 267

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
           RSL     G++  G+K I++L  LT L+LS
Sbjct: 268 RSLHADKTGISSEGIKSIRNLRKLTSLSLS 297



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 101/232 (43%), Gaps = 27/232 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S  + LT L F        QG+++   +  L  L L  C +    +  +  L +L SLN
Sbjct: 70  ISQSTQLTDLDF--TTCTLDQGLESLCEMKRLTSLWLPSCPKYANKVELIGQLTQLTSLN 127

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV----- 119
           I     I D D   +  LT L  L IS +++    I  +  L  L +LN+  C +     
Sbjct: 128 I-CARGINDQDGVHIKELTQLTELDISLNQIVFETIESISQLTNLIILNMSYCNIGDDGA 186

Query: 120 -------------------TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160
                              T A + S+S L  L  L+++  ++S  G E  S + +L  L
Sbjct: 187 CLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISNNEISKTGAESISGLRNLTYL 246

Query: 161 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 212
           N+G+N I DE    +  L+ L SL+ D  GI  EG+ ++  L  L  L LS+
Sbjct: 247 NIGYNLIGDEGCDFICDLSLLRSLHADKTGISSEGIKSIRNLRKLTSLSLSN 298


>gi|168700135|ref|ZP_02732412.1| hypothetical protein GobsU_11445 [Gemmata obscuriglobus UQM 2246]
          Length = 120

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 3/120 (2%)

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
           L  LKGLT L   +L    + D G+  L+GL  L  LEL+ TQV  +G++ LSGLT L +
Sbjct: 4   LAALKGLTQL---DLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           ++L FT ++D  ++ L+GL  L  LNL    +TD G+ AL  L GLT LDL   R+TD+G
Sbjct: 61  LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 1/115 (0%)

Query: 271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
           L +L GLT LDLF  ++TD G   L   K L  LE+    +TDAGVK +  L++LT L+L
Sbjct: 4   LAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTTLDL 63

Query: 331 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
                +TD  ++ +SGL  L+ LN+  + +T AG++ L  LK L  L L   +VT
Sbjct: 64  G-FTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVT 117



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 4/119 (3%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           L  LKGL +L+  + K    +TD  +K LSGL  L  L+++ ++VTD+G+  L GL  LT
Sbjct: 4   LAALKGLTQLDLFDTK----VTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALT 59

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            L+L    VT A + +LS L  L  LNL    ++D G +  + +  L +L+L F  +TD
Sbjct: 60  TLDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTD 118



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 69/118 (58%)

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
            L  L  L  L+L DT+V   G++ LSGL  L  + L+FT ++D  ++ L+GL++L +L+
Sbjct: 3   ELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTTLD 62

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L   ++TD G+ AL+ L  L  L+L    +TD+G   L   K L  L++    +TDAG
Sbjct: 63  LGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 67/112 (59%)

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
           ++ L+ L  L  ++L  T ++D  +++L+GL  L  L L   Q+TD G+ AL+ LT LT 
Sbjct: 1   MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
           LDL   ++TD+G   L   K+L  L +    +TDAGVK +  L  LT+L+LS
Sbjct: 61  LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLS 112



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           +++LA L  L  L+L   ++TD G+  L+ L GLT L+L   ++TD+G   L     L +
Sbjct: 1   MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           L++    +TDAGVK +  L  L  LNL     +TD  ++ ++GL GL  L++S +R+T A
Sbjct: 61  LDLGFTKVTDAGVKALSGLKHLIQLNLGVTV-VTDAGVKALAGLKGLTILDLSFTRVTDA 119

Query: 364 G 364
           G
Sbjct: 120 G 120



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           MK  A L  L +LDL        G+  L GL  L  L + +   +TD+ +K LSGLT L 
Sbjct: 1   MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQ-VTDAGVKALSGLTALT 59

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           +L +  +KVTD+G+  L GL+ L  LNL    VT A + +L+ L  L  L+L+  +++D 
Sbjct: 60  TLDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDA 119

Query: 147 G 147
           G
Sbjct: 120 G 120



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 68/118 (57%)

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           +  L+AL  L  L+L   +++D G ++ S +  L  L L F ++TD  +  L GLT L +
Sbjct: 1   MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           L+L    + D G+  L+GL +L  L L  T V  +G++ L+GL  L  ++LSFT ++D
Sbjct: 61  LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTD 118



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 63/120 (52%)

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           MK L+ L  L  L +  +KVTD G+  L GL+ LT L L    VT A + +LS L +L  
Sbjct: 1   MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L+L   +++D G +  S +  L  LNLG   +TD  +  L GL  L  L+L    + D G
Sbjct: 61  LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 66/120 (55%)

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
            ++ + +  L  L+L   ++TD  +  L GL  L  L L    + D G+  L+GL  L  
Sbjct: 1   MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267
           L+L  T+V  +G++ LSGL +L  +NL  T ++D  ++ LAGL  L  L+L   ++TD G
Sbjct: 61  LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 2/120 (1%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L+ L  LT L    +  +T  G+K  +GL  L +L+L        G+  L GL  L +
Sbjct: 2   KELAALKGLTQLDLF-DTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++ +   +TD+ +K LSGL +L  L +  + VTD+G+  L GL+ LT+L+L    VT A
Sbjct: 61  LDLGFTK-VTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDA 119



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + LSGL  LT L       +T  G+KA +GL  L  LDL        G+  L GL  L  
Sbjct: 26  KELSGLKGLTRLELTFTQ-VTDAGVKALSGLTALTTLDLGFTKVTDAGVKALSGLKHLIQ 84

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 99
           LN+     +TD+ +K L+GL  L  L +S ++VTD+G
Sbjct: 85  LNL-GVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120


>gi|320166209|gb|EFW43108.1| ephrin type-B receptor 3 [Capsaspora owczarzaki ATCC 30864]
          Length = 1219

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 153/360 (42%), Gaps = 31/360 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLES 62
            +GL+ LT L    NN IT      FA L  L +L L     T I     +  GL  L  
Sbjct: 73  FAGLTALTDLQLNNNN-ITIIPDYTFANLPALTELHLFFNPITSISAN--SFAGLTVLNL 129

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN   C  IT       + L+ L ++Q+S +++T        G+  L +L L G  +T+ 
Sbjct: 130 LNSYNCQ-ITSIAANAFTDLSKLTNMQMSGNQITSIAPNVFSGMSALKILYLNGNQITSI 188

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
              + + L +L YL+L+  Q+S      F  + +LK+L L  N+IT        G+    
Sbjct: 189 SASAFTGLTALTYLSLDSNQISSIALNAFPGMSALKILRLNINQIT--------GI---- 236

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
                S G+        T L  LK L L+D Q+ S      +GLT L  + L    I+  
Sbjct: 237 -----SAGV-------FTDLSALKELWLNDNQITSISANAFTGLTALTFLRLYVNQITSI 284

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           S      L +L +L L   +IT     A T LT LT L L   +IT   A    +   L 
Sbjct: 285 SPGAFTDLGALTTLILSTNKITSISENAFTGLTALTFLQLDANQITSISAGAFTDLGALT 344

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           +L +    +T         L++LT L L QN  L   +    +GLT L  L +  + ITS
Sbjct: 345 TLILSINTITSISANAFTGLTALTALYLQQN-QLDSISAIAFTGLTALRELWLQVNLITS 403



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 126/294 (42%), Gaps = 25/294 (8%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N IT       +GLT L  LQ++ + +T         L  LT L+L   P+T+   +S +
Sbjct: 63  NQITSISANAFAGLTALTDLQLNNNNITIIPDYTFANLPALTELHLFFNPITSISANSFA 122

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L  L  LN   CQ++      F+ +  L  + +  N+IT        G++ L+ L L+ 
Sbjct: 123 GLTVLNLLNSYNCQITSIAANAFTDLSKLTNMQMSGNQITSIAPNVFSGMSALKILYLNG 182

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             I        TGL  L  L L   Q+ S  L    G++ L+ + L+   I+  S     
Sbjct: 183 NQITSISASAFTGLTALTYLSLDSNQISSIALNAFPGMSALKILRLNINQITGISAGVFT 242

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
            LS+LK L L+  QIT     A T LT LT L L+  +IT                 I  
Sbjct: 243 DLSALKELWLNDNQITSISANAFTGLTALTFLRLYVNQITS----------------ISP 286

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           G  TD G        +LT L LS N  +T  +    +GLT L  L +  ++ITS
Sbjct: 287 GAFTDLG--------ALTTLILSTN-KITSISENAFTGLTALTFLQLDANQITS 331



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 101/249 (40%), Gaps = 25/249 (10%)

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCG---IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           L FN+IT        GLT L  L L++     I D    NL  L  L       T + ++
Sbjct: 60  LSFNQITSISANAFAGLTALTDLQLNNNNITIIPDYTFANLPALTELHLFFNPITSISAN 119

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKL---------------------AGLSSLKSLN 257
               L+ L  L S N   T I+  +   L                     +G+S+LK L 
Sbjct: 120 SFAGLTVLNLLNSYNCQITSIAANAFTDLSKLTNMQMSGNQITSIAPNVFSGMSALKILY 179

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
           L+  QIT    +A T LT LT+L L   +I+            L+ L +    +T     
Sbjct: 180 LNGNQITSISASAFTGLTALTYLSLDSNQISSIALNAFPGMSALKILRLNINQITGISAG 239

Query: 318 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
              DLS+L  L L+ N  +T  +    +GLT L  L +  ++ITS        L  L +L
Sbjct: 240 VFTDLSALKELWLNDN-QITSISANAFTGLTALTFLRLYVNQITSISPGAFTDLGALTTL 298

Query: 378 TLESCKVTA 386
            L + K+T+
Sbjct: 299 ILSTNKITS 307



 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 7/166 (4%)

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           RHL   T      LSF  I+  S    AGL++L  L L+   IT        +L  LT L
Sbjct: 53  RHLGDRT------LSFNQITSISANAFAGLTALTDLQLNNNNITIIPDYTFANLPALTEL 106

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
            LF   IT   A        L  L      +T        DLS LT + +S N  +T   
Sbjct: 107 HLFFNPITSISANSFAGLTVLNLLNSYNCQITSIAANAFTDLSKLTNMQMSGN-QITSIA 165

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
             + SG++ L  L ++ ++ITS        L  L  L+L+S ++++
Sbjct: 166 PNVFSGMSALKILYLNGNQITSISASAFTGLTALTYLSLDSNQISS 211


>gi|149279200|ref|ZP_01885332.1| hypothetical protein PBAL39_12805 [Pedobacter sp. BAL39]
 gi|149229962|gb|EDM35349.1| hypothetical protein PBAL39_12805 [Pedobacter sp. BAL39]
          Length = 1105

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 184/431 (42%), Gaps = 57/431 (13%)

Query: 13   SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCI 71
             LSF   N +  + ++ F G  +L  L+L+R  R +G  L N  GL  LE L++ + N I
Sbjct: 635  QLSF---NMLEDKYLEVFRGAESLRYLNLDR-NRFNGSCLRNFVGL-NLEHLDLSY-NEI 688

Query: 72   TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
            TD ++K L    NLKS+ +  +++   G    +   +L  L L    +T  CL   S   
Sbjct: 689  TDDNLKLLGSCPNLKSINLHLNELEGHGFDIFESTTELEWLTLGSNRLTDDCLRYFSRNL 748

Query: 132  SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH----------------- 174
             L  L LN  Q +  G        SL  L+L  N I  + L+H                 
Sbjct: 749  DLTALYLNENQFNGSGFVYLKNAKSLDTLSLSDNPIDSQYLIHFRNLDKLNYLELGNIRL 808

Query: 175  ---LKGLTN---LESLNLDSCGIGDEGL-----------VNLTG--------------LC 203
               LK  TN   LE + L + GI D+ L           ++ +G              L 
Sbjct: 809  GDGLKYFTNSYLLEDIRLYNTGITDQDLQSLVFGNKLKRIDFSGNALTGEVFDIFRGKLE 868

Query: 204  NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQ 262
             L+ L+++D Q+GSS         ++  +NLS T I+ G L   +   ++L  L +    
Sbjct: 869  FLERLDINDNQIGSSLPDIFKDSHHINEVNLSNTQINPGHLNYFSHCAATLTRLYMSNLN 928

Query: 263  ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK-NLRSLEICGGGLTDAGVKHIKD 321
            + D  L+       L  L+L G R T S    L++    L  L +    L D  + +++ 
Sbjct: 929  LQDNDLSVFGGFQQLKDLNLSGNRFTGSFLIQLKHLATELEELNLANNQLNDQNLYYLEA 988

Query: 322  LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
             SSL  LNLSQN    D  + L +  + L  LN+S + I+   L+ L+  + L+ + L  
Sbjct: 989  FSSLNTLNLSQNLVEGDGLINLRTSASVLEVLNLSGNSISDDDLQFLEHARFLKEVRLAD 1048

Query: 382  CKVTANDIKRL 392
             K   + +K L
Sbjct: 1049 NKFNGSCVKFL 1059



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 154/361 (42%), Gaps = 52/361 (14%)

Query: 84  NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL------------------- 124
           NL+ LQ+S + + D  +   +G + L  LNL+      +CL                   
Sbjct: 630 NLQILQLSFNMLEDKYLEVFRGAESLRYLNLDRNRFNGSCLRNFVGLNLEHLDLSYNEIT 689

Query: 125 -DSLSALGS---LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-------- 172
            D+L  LGS   L  +NL+  +L   G + F     L+ L LG N +TD+CL        
Sbjct: 690 DDNLKLLGSCPNLKSINLHLNELEGHGFDIFESTTELEWLTLGSNRLTDDCLRYFSRNLD 749

Query: 173 ----------------VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
                           V+LK   +L++L+L    I  + L++   L  L  LEL + ++G
Sbjct: 750 LTALYLNENQFNGSGFVYLKNAKSLDTLSLSDNPIDSQYLIHFRNLDKLNYLELGNIRLG 809

Query: 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLT 275
             GL++ +    LE I L  TGI+D  L+ L   + LK ++     +T          L 
Sbjct: 810 -DGLKYFTNSYLLEDIRLYNTGITDQDLQSLVFGNKLKRIDFSGNALTGEVFDIFRGKLE 868

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNC 334
            L  LD+   +I  S     ++  ++  + +    +    + +     ++LT L +S N 
Sbjct: 869 FLERLDINDNQIGSSLPDIFKDSHHINEVNLSNTQINPGHLNYFSHCAATLTRLYMS-NL 927

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVTANDIKRLQ 393
           NL D  L +  G   L  LN+S +R T + L  LK L   L  L L + ++   ++  L+
Sbjct: 928 NLQDNDLSVFGGFQQLKDLNLSGNRFTGSFLIQLKHLATELEELNLANNQLNDQNLYYLE 987

Query: 394 S 394
           +
Sbjct: 988 A 988



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 111/258 (43%), Gaps = 4/258 (1%)

Query: 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNEITDE 170
           +   G  +    L        +  + ++R  L   G   FS    +L++L L FN + D+
Sbjct: 585 VQFSGIVIQDEMLSCFEGCDQIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNMLEDK 644

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
            L   +G  +L  LNLD        L N  GL NL+ L+LS  ++    L+ L    NL+
Sbjct: 645 YLEVFRGAESLRYLNLDRNRFNGSCLRNFVGL-NLEHLDLSYNEITDDNLKLLGSCPNLK 703

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           SINL    +           + L+ L L + ++TD  L   +    LT L L   +   S
Sbjct: 704 SINLHLNELEGHGFDIFESTTELEWLTLGSNRLTDDCLRYFSRNLDLTALYLNENQFNGS 763

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
           G  YL+N K+L +L +    +    + H ++L  L  L L  N  L D  L+  +    L
Sbjct: 764 GFVYLKNAKSLDTLSLSDNPIDSQYLIHFRNLDKLNYLELG-NIRLGD-GLKYFTNSYLL 821

Query: 351 VSLNVSNSRITSAGLRHL 368
             + + N+ IT   L+ L
Sbjct: 822 EDIRLYNTGITDQDLQSL 839



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 91/207 (43%), Gaps = 3/207 (1%)

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAG 249
           I DE L    G   +  +E+S + +   GL   S    NL+ + LSF  + D  L    G
Sbjct: 592 IQDEMLSCFEGCDQIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNMLEDKYLEVFRG 651

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
             SL+ LNLD  +   + L     L  L HLDL    ITD     L +  NL+S+ +   
Sbjct: 652 AESLRYLNLDRNRFNGSCLRNFVGL-NLEHLDLSYNEITDDNLKLLGSCPNLKSINLHLN 710

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
            L   G    +  + L  L L  N  LTD  L   S    L +L ++ ++   +G  +LK
Sbjct: 711 ELEGHGFDIFESTTELEWLTLGSN-RLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLK 769

Query: 370 PLKNLRSLTLESCKVTANDIKRLQSRD 396
             K+L +L+L    + +  +   ++ D
Sbjct: 770 NAKSLDTLSLSDNPIDSQYLIHFRNLD 796



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 114/309 (36%), Gaps = 58/309 (18%)

Query: 19   NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
            +N I +Q +  F  L  L  L+L    R+  GL        LE + + +   ITD D++ 
Sbjct: 781  DNPIDSQYLIHFRNLDKLNYLELGNI-RLGDGLKYFTNSYLLEDIRL-YNTGITDQDLQS 838

Query: 79   LSGLTNLKSLQISCSKVTDSGIAYLKG----LQKLTL---------------------LN 113
            L     LK +  S + +T       +G    L++L +                     +N
Sbjct: 839  LVFGNKLKRIDFSGNALTGEVFDIFRGKLEFLERLDINDNQIGSSLPDIFKDSHHINEVN 898

Query: 114  LEGCPVTAACLDSLS----ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            L    +    L+  S     L  L+  NLN   L D+    F     LK LNL  N  T 
Sbjct: 899  LSNTQINPGHLNYFSHCAATLTRLYMSNLN---LQDNDLSVFGGFQQLKDLNLSGNRFTG 955

Query: 170  ECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
              L+ LK L T LE LNL +  + D+ L  L    +L  L LS   V   GL        
Sbjct: 956  SFLIQLKHLATELEELNLANNQLNDQNLYYLEAFSSLNTLNLSQNLVEGDGL-------- 1007

Query: 229  LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
               INL  +             S L+ LNL    I+D  L  L     L  + L   +  
Sbjct: 1008 ---INLRTSA------------SVLEVLNLSGNSISDDDLQFLEHARFLKEVRLADNKFN 1052

Query: 289  DSGAAYLRN 297
             S   +L N
Sbjct: 1053 GSCVKFLLN 1061


>gi|428317856|ref|YP_007115738.1| Tetratricopeptide TPR_1 repeat-containing protein [Oscillatoria
           nigro-viridis PCC 7112]
 gi|428241536|gb|AFZ07322.1| Tetratricopeptide TPR_1 repeat-containing protein [Oscillatoria
           nigro-viridis PCC 7112]
          Length = 1221

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 146/303 (48%), Gaps = 32/303 (10%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNL----------- 54
           L+NLT LS  RN  +  + +  F  L  L  L + + T +    GL NL           
Sbjct: 85  LTNLTELSLIRNQIVDIKPLSKFTNLRKL-NLSINQITDVQPLSGLTNLRYLTLTSNQIS 143

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 112
             K L  L +L + +       D+KPLS  TNL+ L +S +++TD  +  L GL  L  L
Sbjct: 144 DVKPLSGLTNLTLLYLADNQIVDIKPLSKFTNLRRLNLSVNQITD--VQPLSGLTNLRSL 201

Query: 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
            L    ++   +  LS L +L  L L   Q+ D   +  + + +L  L+L  N+I D  +
Sbjct: 202 VLNFNQIS--DVKPLSGLTNLTELFLEANQIVD--VKPLAGLTNLTGLSLASNQIVD--V 255

Query: 173 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
             L  +T L  L L    I D  +  L+GL NL  L L+  Q+    ++ LSGLTNL ++
Sbjct: 256 TPLSTMTELNFLYLSGNKIAD--VKPLSGLTNLIVLFLASNQIAD--VKPLSGLTNLPTL 311

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
           +LS   I+D +   LAGL++L +L+L   QI D     L  L  LT LDL   +I D  A
Sbjct: 312 DLSRNQIADAT--PLAGLTNLTNLDLSRNQIADA--TPLAGLVYLTTLDLSRNQIPDGEA 367

Query: 293 AYL 295
             L
Sbjct: 368 ERL 370



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/245 (35%), Positives = 124/245 (50%), Gaps = 24/245 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNLKGLMKLES 62
           LSGL+NLT L    N  +  + +  F  L  L  L + + T +    GL NL+ L+    
Sbjct: 148 LSGLTNLTLLYLADNQIVDIKPLSKFTNLRRL-NLSVNQITDVQPLSGLTNLRSLV---- 202

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN    N I  SD+KPLSGLTNL  L +  +++ D  +  L GL  LT L+L    +   
Sbjct: 203 LNF---NQI--SDVKPLSGLTNLTELFLEANQIVD--VKPLAGLTNLTGLSLASNQIVDV 255

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
               LS +  L +L L+  +++D   +  S + +L VL L  N+I D  +  L GLTNL 
Sbjct: 256 T--PLSTMTELNFLYLSGNKIAD--VKPLSGLTNLIVLFLASNQIAD--VKPLSGLTNLP 309

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           +L+L    I D     L GL NL  L+LS  Q+  +    L+GL  L +++LS   I DG
Sbjct: 310 TLDLSRNQIADA--TPLAGLTNLTNLDLSRNQIADAT--PLAGLVYLTTLDLSRNQIPDG 365

Query: 243 SLRKL 247
              +L
Sbjct: 366 EAERL 370



 Score = 41.6 bits (96), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 36/168 (21%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +++ LS +T L+F   +      +K  +GL NL+ L L                      
Sbjct: 254 DVTPLSTMTELNFLYLSGNKIADVKPLSGLTNLIVLFLA--------------------- 292

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
                N I  +D+KPLSGLTNL +L +S +++ D+    L GL  LT L+L    +  A 
Sbjct: 293 ----SNQI--ADVKPLSGLTNLPTLDLSRNQIADA--TPLAGLTNLTNLDLSRNQIADAT 344

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
              L+ L  L  L+L+R Q+ D   E+   I   K L    N+ TDE 
Sbjct: 345 --PLAGLVYLTTLDLSRNQIPDGEAERL--IQKNKQL---LNQKTDEA 385


>gi|343413823|emb|CCD21194.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
          Length = 707

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 194/380 (51%), Gaps = 58/380 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL- 63
           LS LS+L +L       IT   +   + L +L  LDL  CT    G+ ++  L KL SL 
Sbjct: 292 LSELSSLRTLDLSHCTGIT--DVSPLSELSSLRTLDLSHCT----GITDVSPLSKLSSLR 345

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 121
            + +  C   +D+ PLS L++L++L  S C+ +TD S ++ L GL+ L L +  G  +T 
Sbjct: 346 TLYFLYCTGITDVSPLSELSSLRTLYFSHCTGITDVSPLSELSGLRMLYLSHCTG--ITD 403

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 180
             +  LS   SL  L+ + C    D     SK+ SL+ L+L     ITD  +  L  L++
Sbjct: 404 --VSPLSVFSSLRMLDFSHCTGITD-VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSS 458

Query: 181 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TG 238
           L +L+L  C GI D  +  L+ L +L+ L+LS    G + +  LS L++L +++LS  TG
Sbjct: 459 LHTLDLSHCTGITD--VSPLSELSSLRTLDLSHCT-GITDVSPLSELSSLCTLDLSHCTG 515

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           I+D S   L+ LSSL++L+L             +  TG+T              + L  F
Sbjct: 516 ITDVS--PLSELSSLRTLDL-------------SHCTGIT------------DVSPLSEF 548

Query: 299 KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
            +L +L++    G+TD  V  + +LSSL +LNLS    +TD  +  +S  + L +L++S+
Sbjct: 549 SSLHTLDLSHCTGITD--VSPLSELSSLRMLNLSHCTGITD--VSPLSEFSSLHTLDLSH 604

Query: 358 SRITSAGLRHLKPLKNLRSL 377
                 G+  + PL  L SL
Sbjct: 605 ----CTGITDVSPLSKLSSL 620



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 186/348 (53%), Gaps = 37/348 (10%)

Query: 39  LDLERCTRIHGGLVNLKGLMKLESLNIKW-CNCITDSDMKPLSGLTNLKSLQIS-CSKVT 96
           L L  CT    G+ ++  L    SL + +  +C   +D+ PLS L++L++L +S C+ +T
Sbjct: 2   LYLSHCT----GITDVSPLSVFSSLRMLYLSHCTGITDVSPLSKLSSLRTLDLSHCTGIT 57

Query: 97  D-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 155
           D S ++    L+KL L +  G  +T   +  LS L SL  L+L+ C    D     SK+ 
Sbjct: 58  DVSPLSVFSSLEKLDLSHCTG--ITD--VSPLSKLSSLRTLDLSHCTGITD-VSPLSKLS 112

Query: 156 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 213
           SL  L L     ITD  +  L  L++L +L+L  C GI D  +  L+ L +L+ L LS  
Sbjct: 113 SLHTLGLSHCTGITD--VSPLSKLSSLHTLDLSHCTGITD--VSPLSELSSLRTLGLSHC 168

Query: 214 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAAL 271
             G + +  LS L++L +++LS  TGI+D S   L+ LSSL++L+L     ITD  ++ L
Sbjct: 169 T-GITDVSPLSELSSLRTLDLSHCTGITDVS--PLSKLSSLRTLDLSHCTGITD--VSPL 223

Query: 272 TSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLN 329
           + L+ L  LDL     ITD   + L    +LR+L++    G+TD  V  + +LSSL  L 
Sbjct: 224 SKLSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLG 279

Query: 330 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
           LS    +TD  +  +S L+ L +L++S+      G+  + PL  L SL
Sbjct: 280 LSHCTGITD--VSPLSELSSLRTLDLSH----CTGITDVSPLSELSSL 321


>gi|406831652|ref|ZP_11091246.1| hypothetical protein SpalD1_08439 [Schlesneria paludicola DSM
           18645]
          Length = 267

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 87/154 (56%)

Query: 118 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 177
           P+ A  L  +  L  L  L L   Q++D   EK   + +L  L LG+++++D  + HLKG
Sbjct: 92  PLPAELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKG 151

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           L+ LE + L    +GD+    L GL NLK + L+DT V  +G++ L  L +L+ + L+ T
Sbjct: 152 LSGLEWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGT 211

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
            +SD  L+ L  + +LK L++    I+D G AA+
Sbjct: 212 DVSDDGLKYLIEMKALKRLDIGNTLISDEGQAAI 245



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 3/153 (1%)

Query: 148 CEKFSKIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
            E  S+IG+LK L   +    ++TD  +  L G+ NL  L L    + D G+ +L GL  
Sbjct: 95  AELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSG 154

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           L+ + L  TQVG      L GL NL+SI L+ T ++D  ++KL  L  L+ L L    ++
Sbjct: 155 LEWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVS 214

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
           D GL  L  +  L  LD+    I+D G A +R 
Sbjct: 215 DDGLKYLIEMKALKRLDIGNTLISDEGQAAIRK 247



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 78/151 (51%)

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
           E L  +  L  L++L L    + D  +  L G+ NL  L L  +Q+   G+ HL GL+ L
Sbjct: 96  ELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGL 155

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
           E I L  T + D +   L GL +LKS+ L+   +TD G+  L +L  L +L L G  ++D
Sbjct: 156 EWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSD 215

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
            G  YL   K L+ L+I    ++D G   I+
Sbjct: 216 DGLKYLIEMKALKRLDIGNTLISDEGQAAIR 246



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 4/163 (2%)

Query: 232 INLSFTG--ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
           +   FTG      S+R   G++S+ SL    R +    L+ + +L  L  L L G ++TD
Sbjct: 61  VEFRFTGPMWVPKSIRSHGGVTSI-SLTTTDRPLPAELLSEIGTLKELKTLWLLGPQVTD 119

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
                L   KNL  L +    L+D G++H+K LS L  + L Q   + DKT +++ GL  
Sbjct: 120 VAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLIQT-QVGDKTCDILQGLPN 178

Query: 350 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           L S+ ++++ +T AG++ LK L +L+ L L    V+ + +K L
Sbjct: 179 LKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYL 221



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 20/200 (10%)

Query: 15  SFRRNNAITAQGMKAFAGLINLV---KLDLERCTRIHGGLVN--------------LKGL 57
           SF+    I A+ +++  G +       + + +  R HGG+ +              L  +
Sbjct: 43  SFQDERRIAAK-IESLGGRVEFRFTGPMWVPKSIRSHGGVTSISLTTTDRPLPAELLSEI 101

Query: 58  MKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 115
             L+ L   W     +TD  ++ L G+ NL  L +  S+++D GI +LKGL  L  + L 
Sbjct: 102 GTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLI 161

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
              V     D L  L +L  + LN   ++D G +K   +G L+ L L   +++D+ L +L
Sbjct: 162 QTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYL 221

Query: 176 KGLTNLESLNLDSCGIGDEG 195
             +  L+ L++ +  I DEG
Sbjct: 222 IEMKALKRLDIGNTLISDEG 241



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 98  SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
           S I  LK L+ L LL   G  VT   ++ L  + +L  L L   QLSD G E    +  L
Sbjct: 99  SEIGTLKELKTLWLL---GPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGL 155

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
           + + L   ++ D+    L+GL NL+S+ L+   + D G+  L  L +L+ L L+ T V  
Sbjct: 156 EWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSD 215

Query: 218 SGLRHLSGLTNLESINLSFTGISD---GSLRK 246
            GL++L  +  L+ +++  T ISD    ++RK
Sbjct: 216 DGLKYLIEMKALKRLDIGNTLISDEGQAAIRK 247



 Score = 41.2 bits (95), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 1/98 (1%)

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
             K L++L + G  +TD  V+ +  + +LT L L  +  L+D+ +E + GL+GL  + + 
Sbjct: 103 TLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYS-QLSDRGIEHLKGLSGLEWIFLI 161

Query: 357 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
            +++       L+ L NL+S+ L    VT   +K+L++
Sbjct: 162 QTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKA 199


>gi|17549135|ref|NP_522475.1| GALA protein 1 [Ralstonia solanacearum GMI1000]
 gi|17431386|emb|CAD18065.1| lrr-gala family type III effector protein (gala 1) [Ralstonia
           solanacearum GMI1000]
          Length = 661

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 167/352 (47%), Gaps = 3/352 (0%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 68
           + LT+L  R  N I   G +A A   ++  LD         G   L     L SL++ + 
Sbjct: 188 TTLTALDIR-GNGIGDAGAQALAANTSITSLDASFNDIGVAGARALAANTTLTSLDLGF- 245

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I D  ++ L+  T+L SL +   ++ D+G A L     LT ++L    +     + L+
Sbjct: 246 NAIGDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLTCNHIGEEGAEGLA 305

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
           A   L  L+L R  +SD G    +   +L  L + FN+I       L   T L +L++  
Sbjct: 306 ANTVLTSLDLTRNSISDRGAAALAGNTTLTSLCVNFNDIYGRGARWLAENTTLTTLDISY 365

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             IGD G + L     L+ L +   ++G  G R L+G T L ++++S   I +   + LA
Sbjct: 366 NPIGDWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTTLTTLDISVNAIGNEGAQALA 425

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
             ++L +L+L + ++      A  + T L  LD+   RI  +GA  L +   L +L + G
Sbjct: 426 ANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIEAAGAQALADNTALTTLRVTG 485

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
             +  AG + +    SLT LN+SQN ++     + ++  T L SL+VS++ I
Sbjct: 486 NQIGMAGAQALAANRSLTKLNISQN-DIRSAGAQALAANTSLTSLDVSSASI 536



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 138/304 (45%), Gaps = 28/304 (9%)

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           LT L++ G  +  A   +L+A  S+  L+ +   +   G    +   +L  L+LGFN I 
Sbjct: 190 LTALDIRGNGIGDAGAQALAANTSITSLDASFNDIGVAGARALAANTTLTSLDLGFNAIG 249

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           DE L  L   T+L SL + SC IGD G   L     L  ++L+   +G  G   L+  T 
Sbjct: 250 DEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLTCNHIGEEGAEGLAANTV 309

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           L S++L+   ISD     LAG ++L SL ++   I   G   L   T LT LD+    I 
Sbjct: 310 LTSLDLTRNSISDRGAAALAGNTTLTSLCVNFNDIYGRGARWLAENTTLTTLDISYNPIG 369

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN-----------CNLT 337
           D GA  L +   LRSL +  G +   G + +   ++LT L++S N            N T
Sbjct: 370 DWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTTLTTLDISVNAIGNEGAQALAANAT 429

Query: 338 DKTLELIS------------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
             TL L S              T L SL++  +RI +AG + L       +  L + +VT
Sbjct: 430 LTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIEAAGAQALAD-----NTALTTLRVT 484

Query: 386 ANDI 389
            N I
Sbjct: 485 GNQI 488



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 149/337 (44%), Gaps = 10/337 (2%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR---IHG-GLVNLKGLM 58
           E L+  + LTSL   RN+ I+ +G  A AG   L  L    C     I+G G   L    
Sbjct: 302 EGLAANTVLTSLDLTRNS-ISDRGAAALAGNTTLTSL----CVNFNDIYGRGARWLAENT 356

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
            L +L+I + N I D     L+    L+SL +   ++   G   L G   LT L++    
Sbjct: 357 TLTTLDISY-NPIGDWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTTLTTLDISVNA 415

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +      +L+A  +L  L+L  C+L     E F    +L  L++G N I       L   
Sbjct: 416 IGNEGAQALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIEAAGAQALADN 475

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           T L +L +    IG  G   L    +L  L +S   + S+G + L+  T+L S+++S   
Sbjct: 476 TALTTLRVTGNQIGMAGAQALAANRSLTKLNISQNDIRSAGAQALAANTSLTSLDVSSAS 535

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           I     + LA  +S+  LN++   I D G  AL +   LT L      I  +G   L   
Sbjct: 536 IGAAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYACDNFIGTAGVQALAAN 595

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
             L SL I G  + DAGVK +   ++LT L + +  +
Sbjct: 596 TRLTSLSIWGNRIGDAGVKALAANTTLTKLTIGKRVD 632



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 147/336 (43%), Gaps = 2/336 (0%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I  +G +  A    L  LDL R +    G   L G   L SL + + N I     + L
Sbjct: 294 NHIGEEGAEGLAANTVLTSLDLTRNSISDRGAAALAGNTTLTSLCVNF-NDIYGRGARWL 352

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           +  T L +L IS + + D G   L     L  L++    +      +L+   +L  L+++
Sbjct: 353 AENTTLTTLDISYNPIGDWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTTLTTLDIS 412

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
              + ++G +  +   +L  L+L   E+        K  T L SL++    I   G   L
Sbjct: 413 VNAIGNEGAQALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIEAAGAQAL 472

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
                L  L ++  Q+G +G + L+   +L  +N+S   I     + LA  +SL SL++ 
Sbjct: 473 ADNTALTTLRVTGNQIGMAGAQALAANRSLTKLNISQNDIRSAGAQALAANTSLTSLDVS 532

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
           +  I   G  AL + T +T L++    I D+GA  L     L SL  C   +  AGV+ +
Sbjct: 533 SASIGAAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYACDNFIGTAGVQAL 592

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
              + LT L++  N  + D  ++ ++  T L  L +
Sbjct: 593 AANTRLTSLSIWGN-RIGDAGVKALAANTTLTKLTI 627


>gi|325108218|ref|YP_004269286.1| hypothetical protein Plabr_1653 [Planctomyces brasiliensis DSM
           5305]
 gi|324968486|gb|ADY59264.1| hypothetical protein Plabr_1653 [Planctomyces brasiliensis DSM
           5305]
          Length = 1046

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 23/245 (9%)

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           ++ W NC  D D+  LS   +L+ + I+   +TD     L   Q+L  + L G  +T A 
Sbjct: 312 DLDWMNC-NDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLRHIRLTGNQLTEAS 370

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L  LS           RCQ         ++I  +++   G   I +E    L     L  
Sbjct: 371 LRHLS-----------RCQ---------AEI--IELTGRGLKHIPNEIFSQLAKSETLRD 408

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           L L    + D+ L  L+ L +L+ L     Q+  +GL+ L+ +  L+ I L     +D +
Sbjct: 409 LRLWDTALTDDNLQALSSLTSLRVLCADGHQLTPAGLKQLASMPFLQEIRLPGANWTDET 468

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           +  L  L SL+ ++L    IT+ GLA L ++T L  +DL G  IT+ G A L    +L+ 
Sbjct: 469 IALLQPLKSLRRIDLADSAITNAGLAELANITSLEWIDLQGTDITNQGVAALAALNDLQR 528

Query: 304 LEICG 308
           LE+ G
Sbjct: 529 LELRG 533



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 118/248 (47%), Gaps = 16/248 (6%)

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           +L+    +DD     S   SL+ + +  + ITD     L     L  + L    + +  L
Sbjct: 312 DLDWMNCNDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLRHIRLTGNQLTEASL 371

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRH--------LSGLTNLESINLSFTGISDGSLRKLA 248
            +L+  C  + +EL+       GL+H        L+    L  + L  T ++D +L+ L+
Sbjct: 372 RHLS-RCQAEIIELT-----GRGLKHIPNEIFSQLAKSETLRDLRLWDTALTDDNLQALS 425

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
            L+SL+ L  D  Q+T  GL  L S+  L  + L GA  TD   A L+  K+LR +++  
Sbjct: 426 SLTSLRVLCADGHQLTPAGLKQLASMPFLQEIRLPGANWTDETIALLQPLKSLRRIDLAD 485

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
             +T+AG+  + +++SL  ++L Q  ++T++ +  ++ L  L  L +  +R        L
Sbjct: 486 SAITNAGLAELANITSLEWIDL-QGTDITNQGVAALAALNDLQRLELRGTRCNRGSWNTL 544

Query: 369 -KPLKNLR 375
            KP  ++R
Sbjct: 545 SKPFPDIR 552



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 112/261 (42%), Gaps = 43/261 (16%)

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           G EK +    L  +N       D+ +  L    +L  + + S  I D     L     L+
Sbjct: 303 GVEKNTNPADLDWMNC-----NDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLR 357

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTG---ISDGSLRKLAGLSSLKSLNLDARQI 263
            + L+  Q+  + LRHLS     E I L+  G   I +    +LA   +L+ L L    +
Sbjct: 358 HIRLTGNQLTEASLRHLS-RCQAEIIELTGRGLKHIPNEIFSQLAKSETLRDLRLWDTAL 416

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
           TD  L AL+SLT                        +LR L   G  LT AG+K +  + 
Sbjct: 417 TDDNLQALSSLT------------------------SLRVLCADGHQLTPAGLKQLASMP 452

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
            L  + L    N TD+T+ L+  L  L  +++++S IT+AGL  L  + +L  + L+   
Sbjct: 453 FLQEIRLP-GANWTDETIALLQPLKSLRRIDLADSAITNAGLAELANITSLEWIDLQGTD 511

Query: 384 VTA---------NDIKRLQSR 395
           +T          ND++RL+ R
Sbjct: 512 ITNQGVAALAALNDLQRLELR 532



 Score = 38.5 bits (88), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 18/153 (11%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIH----GGLVNLKGLMKLESLNIKWCNCITDS 74
           + A+T   ++A + L +L  L    C   H     GL  L  +  L+ + +   N  TD 
Sbjct: 413 DTALTDDNLQALSSLTSLRVL----CADGHQLTPAGLKQLASMPFLQEIRLPGANW-TDE 467

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
            +  L  L +L+ + ++ S +T++G+A L  +  L  ++L+G  +T   + +L+AL    
Sbjct: 468 TIALLQPLKSLRRIDLADSAITNAGLAELANITSLEWIDLQGTDITNQGVAALAALN--- 524

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
             +L R +L    C +    GS   L+  F +I
Sbjct: 525 --DLQRLELRGTRCNR----GSWNTLSKPFPDI 551


>gi|290990083|ref|XP_002677666.1| predicted protein [Naegleria gruberi]
 gi|284091275|gb|EFC44922.1| predicted protein [Naegleria gruberi]
          Length = 262

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 9/245 (3%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNR 140
           L  L SL I    V D  IA L  L+ LT LN+   P+    L  +   L  L  L++  
Sbjct: 5   LKQLNSLNIGYCSVED--IAPLGQLKDLTCLNINHIPIGLEGLKIIGENLQQLKSLDVTN 62

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT---NLESLNL-DSCGIG-DEG 195
           C ++++  +   ++ +L+ L + F     +CL  ++ L+    L+SLN+ +S  IG  +G
Sbjct: 63  CGITNEAAQYIRQLNNLESLTITF-VFYQKCLKGVEALSEMKQLKSLNIGNSSDIGGPQG 121

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
              ++ L NL  L +  T +   G R +S L +L  ++L+   ISD   + ++GL  +  
Sbjct: 122 AKLISSLYNLTSLRMDGTMIEDEGARFISELKHLRFLDLTGNNISDEGAKSISGLKHVTD 181

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L++    I D G  A+ ++  L  L L   +I D GA Y+     LRSL +CG  +T   
Sbjct: 182 LDMARNDIGDEGAKAIATMNQLKRLILDNNKIGDDGAQYIGKLPQLRSLAVCGNRITPVS 241

Query: 316 VKHIK 320
           +++++
Sbjct: 242 IQNLR 246



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 15/194 (7%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-----ERCTRIHGGLVNLKGL 57
           ENL  L +L       N  IT +  +    L NL  L +     ++C +   G+  L  +
Sbjct: 50  ENLQQLKSLDV----TNCGITNEAAQYIRQLNNLESLTITFVFYQKCLK---GVEALSEM 102

Query: 58  MKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
            +L+SLNI   + I      K +S L NL SL++  + + D G  ++  L+ L  L+L G
Sbjct: 103 KQLKSLNIGNSSDIGGPQGAKLISSLYNLTSLRMDGTMIEDEGARFISELKHLRFLDLTG 162

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             ++     S+S L  +  L++ R  + D+G +  + +  LK L L  N+I D+   ++ 
Sbjct: 163 NNISDEGAKSISGLKHVTDLDMARNDIGDEGAKAIATMNQLKRLILDNNKIGDDGAQYIG 222

Query: 177 GLTNLESLNLDSCG 190
            L  L SL +  CG
Sbjct: 223 KLPQLRSLAV--CG 234



 Score = 38.1 bits (87), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 75/154 (48%), Gaps = 3/154 (1%)

Query: 25  QGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 82
           +G++A + +  L  L++   + I G  G   +  L  L SL +     I D   + +S L
Sbjct: 94  KGVEALSEMKQLKSLNIGNSSDIGGPQGAKLISSLYNLTSLRMDGT-MIEDEGARFISEL 152

Query: 83  TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 142
            +L+ L ++ + ++D G   + GL+ +T L++    +      +++ +  L  L L+  +
Sbjct: 153 KHLRFLDLTGNNISDEGAKSISGLKHVTDLDMARNDIGDEGAKAIATMNQLKRLILDNNK 212

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
           + DDG +   K+  L+ L +  N IT   + +L+
Sbjct: 213 IGDDGAQYIGKLPQLRSLAVCGNRITPVSIQNLR 246


>gi|320165418|gb|EFW42317.1| tyrosine-protein kinase CSK [Capsaspora owczarzaki ATCC 30864]
          Length = 953

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 128/289 (44%), Gaps = 2/289 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N IT       +GLT L  L +  +++T        GL  LT L      +T+   D+ +
Sbjct: 9   NPITSIPTNAFTGLTALTELSLLYNQITGISAGTFTGLTALTALYFASNQITSIPADAFT 68

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLD 187
            L +L +L+L   Q++      F+ + +L  L+L +N+IT          LT L  L+LD
Sbjct: 69  GLTALTHLSLQYNQITSISGTAFTSLTALTYLSLQYNQITSISGTAFTFNLTALTYLSLD 128

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
           S  I    +   TGL  L  L L   Q+ S  +   +GLT L S+ L    I+       
Sbjct: 129 SNQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQITSIPAAAC 188

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
            GL +L  L+L   QIT     A T LT LT+L +   +IT   A    +   L  L + 
Sbjct: 189 TGLPALTELSLGINQITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAALTDLHLD 248

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           G  +T         L++LT L L QN  +T     L  GL   ++L++S
Sbjct: 249 GNQITSIPDFSFTGLTALTTLAL-QNNPITTLPPGLFKGLPNALALSLS 296



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 113/253 (44%), Gaps = 4/253 (1%)

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           Y+N N   ++      F+ + +L  L+L +N+IT        GLT L +L   S  I   
Sbjct: 5   YINSN--PITSIPTNAFTGLTALTELSLLYNQITGISAGTFTGLTALTALYFASNQITSI 62

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSL 253
                TGL  L  L L   Q+ S      + LT L  ++L +  I+  S       L++L
Sbjct: 63  PADAFTGLTALTHLSLQYNQITSISGTAFTSLTALTYLSLQYNQITSISGTAFTFNLTAL 122

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
             L+LD+ QIT   + A T LT LT+L L+  +IT            L SL +    +T 
Sbjct: 123 TYLSLDSNQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQITS 182

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 373
                   L +LT L+L  N  +T    +  +GLT L  L+V N++ITS        L  
Sbjct: 183 IPAAACTGLPALTELSLGIN-QITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAA 241

Query: 374 LRSLTLESCKVTA 386
           L  L L+  ++T+
Sbjct: 242 LTDLHLDGNQITS 254



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 96/211 (45%), Gaps = 9/211 (4%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
            + L+ LT LS + N   +  G      L  L  L L+  + T I  G     GL  L  
Sbjct: 91  FTSLTALTYLSLQYNQITSISGTAFTFNLTALTYLSLDSNQITSIPVGA--FTGLTALTY 148

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++ + N IT   +   +GLT L SL +  +++T    A   GL  LT L+L    +T+ 
Sbjct: 149 LSL-YTNQITSISVNAFTGLTALASLVLQNNQITSIPAAACTGLPALTELSLGINQITSI 207

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             D+ + L +L YL++   Q++      F+ + +L  L+L  N+IT        GLT L 
Sbjct: 208 PADAFTGLTALTYLSVENNQITSIPAGAFTDLAALTDLHLDGNQITSIPDFSFTGLTALT 267

Query: 183 SLNLDSCGIG--DEGLVNLTGLCNLKCLELS 211
           +L L +  I     GL    GL N   L LS
Sbjct: 268 TLALQNNPITTLPPGL--FKGLPNALALSLS 296



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 9/236 (3%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLV--NLKGLMKL 60
            +GL+ LT LS + N  IT+    AF  L  L  L L+  + T I G     NL  L  L
Sbjct: 67  FTGLTALTHLSLQYNQ-ITSISGTAFTSLTALTYLSLQYNQITSISGTAFTFNLTALTYL 125

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            SL+    N IT   +   +GLT L  L +  +++T   +    GL  L  L L+   +T
Sbjct: 126 -SLD---SNQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQIT 181

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
           +    + + L +L  L+L   Q++    + F+ + +L  L++  N+IT         L  
Sbjct: 182 SIPAAACTGLPALTELSLGINQITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAA 241

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
           L  L+LD   I      + TGL  L  L L +  + +       GL N  +++LS+
Sbjct: 242 LTDLHLDGNQITSIPDFSFTGLTALTTLALQNNPITTLPPGLFKGLPNALALSLSY 297


>gi|326201424|ref|ZP_08191295.1| Dockerin type 1 [Clostridium papyrosolvens DSM 2782]
 gi|325988024|gb|EGD48849.1| Dockerin type 1 [Clostridium papyrosolvens DSM 2782]
          Length = 1098

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 126/415 (30%), Positives = 195/415 (46%), Gaps = 61/415 (14%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+GL++L  L+  ++N      + A AGLINL  LDL   +     +  LK + KL  L 
Sbjct: 102 LAGLTSLKYLALYQSNI---SNINALAGLINLEYLDLGMNSV--SDISALKNMTKLTYLE 156

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           + W N    +D+  LS LTNL+ LQ+ C+++ D  I+ +  L KL  L+L    ++   +
Sbjct: 157 LSWNNI---TDISALSKLTNLQYLQLGCNRIVD--ISPISNLTKLKTLHLFYNRISD--I 209

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             LS L +L YL+LN   +S+      + +  L  L+LGFN+ITD  +  L  LT +  L
Sbjct: 210 SGLSGLKTLTYLHLNSNNVSN--INPLNGLTMLSYLDLGFNKITD--ISALNKLTKITDL 265

Query: 185 NLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT----NLESINLSFTGI 239
           +L    I +   L NLT L +LK LE +     S     +S LT    NLE I+     +
Sbjct: 266 DLSYNKITNINVLSNLTSLNDLK-LENNPINNYSPITGIISKLTKKDFNLEPISFPDADL 324

Query: 240 SDGSLRKLAGLSSLKSLNLDARQIT--DTGLAALTSLTGLTHL----DLFGA-------- 285
           +     +L   S      ++A QIT  D G   + SL+G+  L    DL+ A        
Sbjct: 325 AKAVCHQLGKNSEDMIYKIEAPQITVLDAGNMEIKSLSGIEQLCNLKDLYLAGNELDNIN 384

Query: 286 ----------------RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
                           +I+D     LRN  NL+ L +    ++D  +  + DLSSL  L+
Sbjct: 385 PISALTSLEALNLEKNQISDLNV--LRNLHNLKYLILRDNKISD--ITPLSDLSSLKTLD 440

Query: 330 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           LS N     K L   S L  L  L++ ++ I    +  L+ +  L+ LTL+  ++
Sbjct: 441 LSYNSLTNTKNL---SKLVNLYELHLDDNEIND--INGLQNITKLKILTLDKNQI 490



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 165/369 (44%), Gaps = 69/369 (18%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           SD+ PL+GLT+LK L +  S +  S I  L GL  L  L+L    V+   + +L  +  L
Sbjct: 97  SDVTPLAGLTSLKYLALYQSNI--SNINALAGLINLEYLDLGMNSVSD--ISALKNMTKL 152

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
            YL L+   ++D      SK+ +L+ L LG N I D  +  +  LT L++L+L    I D
Sbjct: 153 TYLELSWNNITD--ISALSKLTNLQYLQLGCNRIVD--ISPISNLTKLKTLHLFYNRISD 208

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
             +  L+GL  L  L L+   V  S +  L+GLT L  ++L F  I+D  +  L  L+ +
Sbjct: 209 --ISGLSGLKTLTYLHLNSNNV--SNINPLNGLTMLSYLDLGFNKITD--ISALNKLTKI 262

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA-------YLRNFKNLRSLEI 306
             L+L   +IT+  +  L++LT L  L L    I +             ++F NL  +  
Sbjct: 263 TDLDLSYNKITN--INVLSNLTSLNDLKLENNPINNYSPITGIISKLTKKDF-NLEPISF 319

Query: 307 CGGGLT--------------------------DAGVKHIKDLSSLTLLNLSQNCNLTD-- 338
               L                           DAG   IK LS      + Q CNL D  
Sbjct: 320 PDADLAKAVCHQLGKNSEDMIYKIEAPQITVLDAGNMEIKSLSG-----IEQLCNLKDLY 374

Query: 339 ------KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA----ND 388
                   +  IS LT L +LN+  ++I+   L  L+ L NL+ L L   K++     +D
Sbjct: 375 LAGNELDNINPISALTSLEALNLEKNQISD--LNVLRNLHNLKYLILRDNKISDITPLSD 432

Query: 389 IKRLQSRDL 397
           +  L++ DL
Sbjct: 433 LSSLKTLDL 441



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 173/381 (45%), Gaps = 57/381 (14%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI---------------- 47
           ++S L N+T L++   +      + A + L NL  L L  C RI                
Sbjct: 142 DISALKNMTKLTYLELSWNNITDISALSKLTNLQYLQL-GCNRIVDISPISNLTKLKTLH 200

Query: 48  --HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 105
             +  + ++ GL  L++L     N    S++ PL+GLT L  L +  +K+TD  I+ L  
Sbjct: 201 LFYNRISDISGLSGLKTLTYLHLNSNNVSNINPLNGLTMLSYLDLGFNKITD--ISALNK 258

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL------KV 159
           L K+T L+L    +T   ++ LS L S     LN  +L ++    +S I  +      K 
Sbjct: 259 LTKITDLDLSYNKITN--INVLSNLTS-----LNDLKLENNPINNYSPITGIISKLTKKD 311

Query: 160 LNLGFNEITD----ECLVHLKG------LTNLESLNLDSCGIGDEGLVNLTG---LCNLK 206
            NL      D    + + H  G      +  +E+  +     G+  + +L+G   LCNLK
Sbjct: 312 FNLEPISFPDADLAKAVCHQLGKNSEDMIYKIEAPQITVLDAGNMEIKSLSGIEQLCNLK 371

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            L L+  ++    +  +S LT+LE++NL    ISD  L  L  L +LK L L   +I+D 
Sbjct: 372 DLYLAGNEL--DNINPISALTSLEALNLEKNQISD--LNVLRNLHNLKYLILRDNKISD- 426

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSL 325
            +  L+ L+ L  LDL    +T++    L    NL  L +    + D  G+++I  L  L
Sbjct: 427 -ITPLSDLSSLKTLDLSYNSLTNTKN--LSKLVNLYELHLDDNEINDINGLQNITKLKIL 483

Query: 326 TL-LNLSQNCNLTDKTLELIS 345
           TL  N  Q+  L    L+LIS
Sbjct: 484 TLDKNQIQDVCLLKNKLDLIS 504


>gi|290989399|ref|XP_002677325.1| predicted protein [Naegleria gruberi]
 gi|284090932|gb|EFC44581.1| predicted protein [Naegleria gruberi]
          Length = 412

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 150/313 (47%), Gaps = 33/313 (10%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI--K 66
           S++  L F      +   MK ++ + NL  L +++C       V L  + +LESLNI   
Sbjct: 77  SSIKKLKFSHLTIKSTDFMKIYSNMKNLKSLSMKKCRIEKKDFVYLMKIKQLESLNIIPH 136

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
           + N   +   K  + LTNLK          D GI+              G  +    L  
Sbjct: 137 FSNITNEEICKICTNLTNLK----------DFGIS--------------GMSLQYKTLQY 172

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           ++ + SL  L+++  +L ++  ++  K+  L  LN+G N      L ++K L  L+SLN+
Sbjct: 173 ITNMKSLTSLDISNTELYEEYLQEIGKMTHLTSLNIGDNGTIP--LQYIKSLAGLKSLNI 230

Query: 187 DSCGI--GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGS 243
           +   I  G   L  L  L +L  L +S   + + GL++L     +L S+++S+ G+  GS
Sbjct: 231 NGRFINNGFYELRELKDLHSLTELSVSHNTIKTKGLKYLIDTFPDLTSLDISYNGL--GS 288

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           ++K+  L  L  L++    I+D  L  +T L  LT L++   +ITD+GA    + ++LR+
Sbjct: 289 IKKIRKLKHLTKLDISNNSISDQDLIYITCLPQLTKLNISSNQITDNGALLFASMESLRN 348

Query: 304 LEICGGGLTDAGV 316
           +++    +T+  V
Sbjct: 349 IDVRFNDITNDKV 361



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 13/206 (6%)

Query: 205 LKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-- 261
           +K L+ S   + S+  ++  S + NL+S+++    I       L  +  L+SLN+     
Sbjct: 79  IKKLKFSHLTIKSTDFMKIYSNMKNLKSLSMKKCRIEKKDFVYLMKIKQLESLNIIPHFS 138

Query: 262 QITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
            IT+  +  + T+LT L    + G  +      Y+ N K+L SL+I    L +  ++ I 
Sbjct: 139 NITNEEICKICTNLTNLKDFGISGMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIG 198

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
            ++ LT LN+  N  +    L+ I  L GL SLN+ N R  + G   L+ LK+L SLT  
Sbjct: 199 KMTHLTSLNIGDNGTI---PLQYIKSLAGLKSLNI-NGRFINNGFYELRELKDLHSLT-- 252

Query: 381 SCKVTANDIKRLQSRDLPNLVSFRPE 406
              V+ N IK   ++ L  L+   P+
Sbjct: 253 ELSVSHNTIK---TKGLKYLIDTFPD 275



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 122/252 (48%), Gaps = 35/252 (13%)

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL--DSCGIGDEGLVNL-T 200
           S D  + +S + +LK L++    I  +  V+L  +  LESLN+      I +E +  + T
Sbjct: 91  STDFMKIYSNMKNLKSLSMKKCRIEKKDFVYLMKIKQLESLNIIPHFSNITNEEICKICT 150

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
            L NLK   +S   +    L++++ + +L S+++S T + +  L+++  ++ L SLN   
Sbjct: 151 NLTNLKDFGISGMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIGKMTHLTSLN--- 207

Query: 261 RQITDTG---LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
             I D G   L  + SL GL  L++ G R  ++G      F  LR L             
Sbjct: 208 --IGDNGTIPLQYIKSLAGLKSLNING-RFINNG------FYELREL------------- 245

Query: 318 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
             KDL SLT L++S N   T     LI     L SL++S + + S  ++ ++ LK+L  L
Sbjct: 246 --KDLHSLTELSVSHNTIKTKGLKYLIDTFPDLTSLDISYNGLGS--IKKIRKLKHLTKL 301

Query: 378 TLESCKVTANDI 389
            + +  ++  D+
Sbjct: 302 DISNNSISDQDL 313



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 23/208 (11%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--------L 54
           + +  +++LTSL+   N  I  Q +K+ AGL +L          I+G  +N        L
Sbjct: 195 QEIGKMTHLTSLNIGDNGTIPLQYIKSLAGLKSL---------NINGRFINNGFYELREL 245

Query: 55  KGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113
           K L  L  L++   N I    +K L     +L SL IS + +    I  ++ L+ LT L+
Sbjct: 246 KDLHSLTELSVS-HNTIKTKGLKYLIDTFPDLTSLDISYNGL--GSIKKIRKLKHLTKLD 302

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           +    ++   L  ++ L  L  LN++  Q++D+G   F+ + SL+ +++ FN+IT++ + 
Sbjct: 303 ISNNSISDQDLIYITCLPQLTKLNISSNQITDNGALLFASMESLRNIDVRFNDITNDKV- 361

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTG 201
             +G+ NLE L   S  +      N  G
Sbjct: 362 -FQGMINLEKLKFKSFSLEPSSRKNKDG 388


>gi|290993104|ref|XP_002679173.1| LRR_RI domain-containing protein [Naegleria gruberi]
 gi|284092789|gb|EFC46429.1| LRR_RI domain-containing protein [Naegleria gruberi]
          Length = 370

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 140/285 (49%), Gaps = 9/285 (3%)

Query: 100 IAYLKGLQKLTLL-NLEGCPVTAACLDS-----LSALGSLFYLNLNRCQLSDDGCEKFSK 153
           I YL  L  L L+ NL+   + +  LDS     +S + SL  L+LN  ++SD+G +  SK
Sbjct: 83  IGYL--LNSLCLMRNLQELYLVSKELDSNDAQVISEMKSLTKLDLNGNRISDEGVDFISK 140

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
           +  L  L +  N + DE    ++G+  L +L + +    + G   ++ + NL  L++S+ 
Sbjct: 141 MSGLTYLRIDSNAVHDEGAKSIQGMKGLRTLKVSNNSFFEVGFEAISQMGNLTKLDMSEN 200

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
            +G  G + +  + NL S+ + +  I    ++ L  +  L  L++   QI + G   +  
Sbjct: 201 SLGIEGTKSIGIMKNLTSLKIDYNHIGSEGVKYLNEMKQLTKLSIVENQIDEEGAKYIGE 260

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           L  LT LD+    + + GA  +     L  L+I    + + G   + +L+ LT L+++ N
Sbjct: 261 LKQLTILDISFNYVGEKGAKSISTLNKLTMLDIIENNIGENGAISLSNLNQLTKLDINSN 320

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
            N+     + +  L  L  LN+S + I    +  ++ +KNL+SLT
Sbjct: 321 -NIGHLGAKSLVKLNQLKELNISYNNINDLEINIIRQMKNLKSLT 364



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 134/279 (48%), Gaps = 2/279 (0%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           + NL+ L +   ++  +    +  ++ LT L+L G  ++   +D +S +  L YL ++  
Sbjct: 93  MRNLQELYLVSKELDSNDAQVISEMKSLTKLDLNGNRISDEGVDFISKMSGLTYLRIDSN 152

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            + D+G +    +  L+ L +  N   +     +  + NL  L++    +G EG  ++  
Sbjct: 153 AVHDEGAKSIQGMKGLRTLKVSNNSFFEVGFEAISQMGNLTKLDMSENSLGIEGTKSIGI 212

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           + NL  L++    +GS G+++L+ +  L  +++    I +   + +  L  L  L++   
Sbjct: 213 MKNLTSLKIDYNHIGSEGVKYLNEMKQLTKLSIVENQIDEEGAKYIGELKQLTILDISFN 272

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
            + + G  ++++L  LT LD+    I ++GA  L N   L  L+I    +   G K +  
Sbjct: 273 YVGEKGAKSISTLNKLTMLDIIENNIGENGAISLSNLNQLTKLDINSNNIGHLGAKSLVK 332

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSL-NVSNSR 359
           L+ L  LN+S N N+ D  + +I  +  L SL N S +R
Sbjct: 333 LNQLKELNISYN-NINDLEINIIRQMKNLKSLTNHSQNR 370



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 6/206 (2%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMK-LES 62
           + G+  L +L    NN+    G +A + + NL KLD+ E    I G      G+MK L S
Sbjct: 162 IQGMKGLRTLKVS-NNSFFEVGFEAISQMGNLTKLDMSENSLGIEG--TKSIGIMKNLTS 218

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L I + N I    +K L+ +  L  L I  +++ + G  Y+  L++LT+L++    V   
Sbjct: 219 LKIDY-NHIGSEGVKYLNEMKQLTKLSIVENQIDEEGAKYIGELKQLTILDISFNYVGEK 277

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
              S+S L  L  L++    + ++G    S +  L  L++  N I       L  L  L+
Sbjct: 278 GAKSISTLNKLTMLDIIENNIGENGAISLSNLNQLTKLDINSNNIGHLGAKSLVKLNQLK 337

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCL 208
            LN+    I D  +  +  + NLK L
Sbjct: 338 ELNISYNNINDLEINIIRQMKNLKSL 363


>gi|302767392|ref|XP_002967116.1| hypothetical protein SELMODRAFT_87311 [Selaginella moellendorffii]
 gi|300165107|gb|EFJ31715.1| hypothetical protein SELMODRAFT_87311 [Selaginella moellendorffii]
          Length = 637

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 207/423 (48%), Gaps = 43/423 (10%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLK-GLMKLESLNIK 66
           S L  L  R  N++    + A   L +L KLDL  C  I   GL  L  G  KL+ + +K
Sbjct: 118 SALVELDLRCCNSLGDLELAAVCQLGSLRKLDLTGCYMISDAGLGCLAAGCKKLQVVVLK 177

Query: 67  WCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACL 124
            C  I+D+ +  L S    L ++ +S +++TD G+  L  L  L +LNL  C  V  A L
Sbjct: 178 GCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGL 237

Query: 125 DSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-------NEITDECLVHLK 176
              S   SL  L+L+ C+ +++ G    SK  SL+ L LGF       ++IT + L  + 
Sbjct: 238 TRTST--SLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFCSPVKKRSQITGQLLEAVG 294

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---------TQVGSSGLRHLSGLT 227
            LT +++L L  C I  +GL    G C   CL+LSD         T  G + + H  G  
Sbjct: 295 KLTQIQTLKLAGCEIAGDGL-RFVGSC---CLQLSDLSLSKCRGVTDSGMASIFH--GCK 348

Query: 228 NLESINLS----FTGISDGSL-RKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHL 280
           NL  ++L+     T I+  ++ R  AGL SLK   ++A R +T+  +  L    + L  L
Sbjct: 349 NLRKLDLTCCLDLTEITAYNIARSSAGLVSLK---IEACRILTENNIPLLMERCSCLEEL 405

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDK 339
           D+    I D+G   +   K L++L++    ++D G++H+ ++ S L  L+L ++ N+ D 
Sbjct: 406 DVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDA 465

Query: 340 TLELI-SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 397
            +  I +G   L  LN+S    IT A +  +  L +L+ L +  CK    + K  + ++L
Sbjct: 466 GVASIAAGCRKLRILNLSYCPNITDASIVSISQLSHLQQLEIRGCKRVGLEKKLPEFKNL 525

Query: 398 PNL 400
             L
Sbjct: 526 VEL 528



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 144/319 (45%), Gaps = 46/319 (14%)

Query: 16  FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITD 73
            ++ + IT Q ++A   L  +  L L  C  I G  +   G   ++L  L++  C  +TD
Sbjct: 279 VKKRSQITGQLLEAVGKLTQIQTLKLAGC-EIAGDGLRFVGSCCLQLSDLSLSKCRGVTD 337

Query: 74  SDMKPL-SGLTNLKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPV--------- 119
           S M  +  G  NL+ L ++C    +++T   IA  +    L  L +E C +         
Sbjct: 338 SGMASIFHGCKNLRKLDLTCCLDLTEITAYNIA--RSSAGLVSLKIEACRILTENNIPLL 395

Query: 120 --TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 176
               +CL+ L         ++  C + D G E  +K   LK L LGF +++D  + H+ +
Sbjct: 396 MERCSCLEEL---------DVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGR 446

Query: 177 GLTNLESLNLDSCG-IGDEGLVNLTGLC------NLK-CLELSDTQVGSSGLRHLSGLTN 228
             ++L  L+L   G +GD G+ ++   C      NL  C  ++D  + S  +  LS L  
Sbjct: 447 NCSDLIELDLYRSGNVGDAGVASIAAGCRKLRILNLSYCPNITDASIVS--ISQLSHLQQ 504

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARI 287
           LE       G+     +KL    +L  L+L    I D G+ ++      L  L+L   RI
Sbjct: 505 LEIRGCKRVGLE----KKLPEFKNLVELDLKHCGIGDRGMTSIVYCFPNLQQLNLSYCRI 560

Query: 288 TDSGAAYLRNFKNLRSLEI 306
           +++G   L N + L+++++
Sbjct: 561 SNAGLVMLGNLRCLQNVKL 579



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 181/401 (45%), Gaps = 70/401 (17%)

Query: 60  LESLNIKWCNCITDSDMKPLSGL--TNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLE 115
           +ESL++  C  ITD D+  +  L  T L+SL ++     T +GI  L +    L  L+L 
Sbjct: 67  IESLDLSSCIKITDEDLALVGELAGTRLRSLGLARMGGFTVAGIVALARNCSALVELDLR 126

Query: 116 GC------PVTAACLDSLSALGSLFYLNLNRCQLSDD--------GCEKF---------- 151
            C       + A C      LGSL  L+L  C +  D        GC+K           
Sbjct: 127 CCNSLGDLELAAVC-----QLGSLRKLDLTGCYMISDAGLGCLAAGCKKLQVVVLKGCVG 181

Query: 152 ----------SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGL---- 196
                     S    L  +++ + EITD+ +  L  L +L  LNL +C  +GD GL    
Sbjct: 182 ISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTS 241

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-------TGISDGSLRKLAG 249
            +L  L +L C   S T VG S L   S    L+ + L F       + I+   L  +  
Sbjct: 242 TSLLEL-DLSCCR-SVTNVGISFLSKRS----LQFLKLGFCSPVKKRSQITGQLLEAVGK 295

Query: 250 LSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGAR-ITDSG-AAYLRNFKNLRSLEI 306
           L+ +++L L   +I   GL  + S    L+ L L   R +TDSG A+     KNLR L++
Sbjct: 296 LTQIQTLKLAGCEIAGDGLRFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKNLRKLDL 355

Query: 307 -CGGGLTDAGVKHIKDLSSLTLLNLS-QNCN-LTDKTLE-LISGLTGLVSLNVSNSRITS 362
            C   LT+    +I   SS  L++L  + C  LT+  +  L+   + L  L+V++  I  
Sbjct: 356 TCCLDLTEITAYNIAR-SSAGLVSLKIEACRILTENNIPLLMERCSCLEELDVTDCNIDD 414

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
           AGL  +   K L++L L  CKV+ N I+ +  R+  +L+  
Sbjct: 415 AGLECIAKCKFLKTLKLGFCKVSDNGIEHV-GRNCSDLIEL 454


>gi|395538856|ref|XP_003771390.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Sarcophilus
           harrisii]
          Length = 341

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 175/338 (51%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GS   LN
Sbjct: 27  IQGMANIESLNLSGCYNLTDNGLGH----------------------AVVQEIGSPRALN 64

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL  C  + 
Sbjct: 65  LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGCRHLS 124

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GL  L  +NLSF G ISD
Sbjct: 125 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGGISD 184

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 185 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 243

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L SL  C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 244 GLDGLNSLSRCPCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 303

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 304 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTESEKVR 341



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 149/303 (49%), Gaps = 50/303 (16%)

Query: 54  LKGLMKLESLNIKWCNCITDSDM--KPLSGLTNLKSLQIS-CSKVTDSGIA----YLK-- 104
           ++G+  +ESLN+  C  +TD+ +    +  + + ++L +S C ++TDS +     YLK  
Sbjct: 27  IQGMANIESLNLSGCYNLTDNGLGHAVVQEIGSPRALNLSLCKQITDSSLGRIAQYLKGL 86

Query: 105 ---------------------GLQKLTLLNLEGCPVTA-------ACLDSLSALG--SLF 134
                                GLQ+L  LNL GC   +       A +   +A G   L 
Sbjct: 87  EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGCRHLSDVGIGHLAGMTRSAAEGCLGLE 146

Query: 135 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 190
            L L  CQ L+D   +  S+ +  L++LNL F   I+D  L+HL  + +L SLNL SC  
Sbjct: 147 QLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 206

Query: 191 IGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RK 246
           I D G+++L  G   L  L++S   +VG   L +++ GL  L S++     ISD  + R 
Sbjct: 207 ISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISDDGINRM 266

Query: 247 LAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRS 303
           +  +  L++LN+    +ITD GL  +   L+ LT +DL+G  RIT  G   +     L+ 
Sbjct: 267 VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKV 326

Query: 304 LEI 306
           L +
Sbjct: 327 LNL 329



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 120/246 (48%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC-GIGDEGL-------VNLTGLCNLK-CLELSDTQVGSSGLRHLSG 225
           ++G+ N+ESLNL  C  + D GL       +      NL  C +++D+ +G    ++L G
Sbjct: 27  IQGMANIESLNLSGCYNLTDNGLGHAVVQEIGSPRALNLSLCKQITDSSLGRIA-QYLKG 85

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L  LE     N++ TG+    L    GL  LKSLNL   R ++D G+  L  +T      
Sbjct: 86  LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRGCRHLSDVGIGHLAGMTRSAAEG 141

Query: 276 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
             GL  L L    ++TD    ++ R    LR  +L  CGG ++DAG+ H+  + SL  LN
Sbjct: 142 CLGLEQLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 200

Query: 330 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D   + L  G   L  L+VS   ++    L ++ + L  L SL+   C ++ 
Sbjct: 201 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISD 260

Query: 387 NDIKRL 392
           + I R+
Sbjct: 261 DGINRM 266



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 38/240 (15%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   AG+        + L +L L+ C +    L +L    
Sbjct: 108 GLQRLKSLNLRGCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK----LTDLSLKH 163

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+
Sbjct: 164 ISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 223

Query: 111 LLNLEGC--------PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLN 161
            L++  C           A  LD L++L          C +SDDG  +   ++  L+ LN
Sbjct: 224 GLDVSFCDKVGDQSLAYIAQGLDGLNSLSRC------PCHISDDGINRMVRQMHGLRTLN 277

Query: 162 LG-FNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           +G    ITD+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 278 IGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTES 337


>gi|384253405|gb|EIE26880.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
          Length = 641

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 182/422 (43%), Gaps = 68/422 (16%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT-RIHGGLVNLKGLMK 59
           + E L  +  LT L  R+ + IT +G+   AGL  L  L L  C   +     ++    +
Sbjct: 110 LCEALGRMRGLTHLDLRQPSPITGRGLDRLAGLERLRTLRLGPCAGLLDSSFQSIACHTQ 169

Query: 60  LESLNI------KWCNCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLT 110
           L  L+I      + C  +    +  L+ L NL SLQ++    S+  D  +  L  L  LT
Sbjct: 170 LTELDICFGEKGRTCTSLPAEVLAQLATLPNLVSLQLAGFDTSRTED--LPSLHCLSTLT 227

Query: 111 LLNLEGC-----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GF 164
            L L        P   A       + SL  L LN+C +  D     S+  +L+ L++   
Sbjct: 228 HLGLSQVTNSRSPGGVATFLRCMPIQSLIRLELNQCNIGIDVFPLISQATTLRALSVTQC 287

Query: 165 NEITDECLVHLKGLTNLESLNLD---------------------SCGIGDEGLV-----N 198
           + +    L H+ GL+ LESL LD                     SC    + L      N
Sbjct: 288 SPVYGLDLHHMSGLSRLESLTLDHSHPLSSNWSFLQHLTRLTQFSCAAHKDALPMSSDHN 347

Query: 199 LTGLC-------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-------- 243
           + GL        +L+ L+L    +G   L  ++ LT L  +++S  G    S        
Sbjct: 348 IAGLLENAIARKDLQRLDLRGHLLGKE-LGDIAALTALTELDISAAGCDVASHPSIACVF 406

Query: 244 ---LRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFK 299
              L +LAGLS L+ LNL    + + GL  + S L  L HLDL G+ + D+  A+L    
Sbjct: 407 NLGLAQLAGLSRLQRLNLACTAVDEEGLRGICSGLRELLHLDLSGSAVEDADLAHLTKLP 466

Query: 300 NLRSLEICGGG----LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
            L+SL I        ++DAG+  +  +S+L  L +  N  +T   L+ +S LTGL  L+V
Sbjct: 467 RLQSLRINNQPALDDISDAGLAEVSRVSALRCLEVKGNQCITAAGLKHLSALTGLSDLDV 526

Query: 356 SN 357
           S+
Sbjct: 527 SD 528


>gi|290997297|ref|XP_002681218.1| leucine-rich repeat ribonuclease inhibitor family protein
           [Naegleria gruberi]
 gi|284094841|gb|EFC48474.1| leucine-rich repeat ribonuclease inhibitor family protein
           [Naegleria gruberi]
          Length = 342

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 108/217 (49%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           ++ +  L SL I  +++ D G  Y+  +++LT LN+    +       +S +  L  L++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
              ++ D+G +  S++  L  LN+ +  I  E    +  +  L  LN+    IG EG   
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKF 243

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           ++ +  L  L++S+ ++G  G + +S +  L S+N+++  I D   + ++ +  L SLN+
Sbjct: 244 ISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNI 303

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
                 D G   ++ +  LT LD+   RI D GA Y+
Sbjct: 304 SYNITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 112/242 (46%), Gaps = 25/242 (10%)

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           ++ +  L  LN+   ++ D+G +  S++  L  LN+  NEI DE    +  +  L SL++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
               IGDEG   ++ +  L  L +  T +G  G + +S +  L  +N+ +          
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYN--------- 234

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           L G+                G   ++ +  LT LD+    I   GA ++   K L SL I
Sbjct: 235 LIGIE---------------GAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNI 279

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
               + D G K I ++  LT LN+S N    D+  + IS +  L SL++SN+RI   G +
Sbjct: 280 NYNEIGDRGAKFISEMKQLTSLNISYNIT-GDRGAKFISEMKQLTSLDISNNRICDEGAK 338

Query: 367 HL 368
           ++
Sbjct: 339 YI 340



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 104/214 (48%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           +++LT LN+ G  +       +S +  L  LN+   ++ D+G +  S++  L  L++  N
Sbjct: 127 MKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDIRGN 186

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
            I DE   ++  +  L SLN+    IG EG   ++ +  L  L +    +G  G + +S 
Sbjct: 187 RIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKFISE 246

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           +  L  +++S   I     + ++ +  L SLN++  +I D G   ++ +  LT L++   
Sbjct: 247 MKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNISYN 306

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
              D GA ++   K L SL+I    + D G K+I
Sbjct: 307 ITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 103/208 (49%), Gaps = 9/208 (4%)

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           +T +  L  L +   ++G  G +++S +  L S+N+    I D   + ++ +  L SL++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
              +I D G   ++ +  LT L+++   I   GA ++   K L  L I    +   G K 
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKF 243

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           I ++  LTLL++S N  +  +  + IS +  L SLN++ + I   G + +  +K L SL 
Sbjct: 244 ISEMKQLTLLDISNN-EIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLN 302

Query: 379 LESCKVTAN-------DIKRLQSRDLPN 399
           + S  +T +       ++K+L S D+ N
Sbjct: 303 I-SYNITGDRGAKFISEMKQLTSLDISN 329


>gi|406835554|ref|ZP_11095148.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
          Length = 392

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 146/313 (46%), Gaps = 15/313 (4%)

Query: 93  SKVTDSGIAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 148
           S++ DS I  L    +GL ++T +N +   VT+A   S+S L  L  L L+  +++++ C
Sbjct: 72  SEINDSAITQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRVTNEAC 131

Query: 149 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
           EK +++ +L+VL L    + D  +  L  L+NL+SL L  C +   G   +     L+ L
Sbjct: 132 EKIAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPALEYL 191

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
           E+  T +    L  +     L S+ LS   I+D  L  L  L  ++ L  +   I   GL
Sbjct: 192 EIRRTNLDDVSLDLVCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETGIHGWGL 251

Query: 269 AALTSLTG---LTHLDLFGARITDSGAAYLRNFKNLRSL---EICGGGLTDAG-VKHIKD 321
           A      G   L  L LF   +   GA  + NFK++  L   EI    L D G +  ++ 
Sbjct: 252 AHAQKRGGGKNLKELSLFKCPLDGMGAKAIGNFKSVEKLVLGEIP--QLDDEGLMTMVRG 309

Query: 322 LSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
           + +L  LN S+  +L      + + G   L  L++   SRI    +  +K +KNL+ L +
Sbjct: 310 MKNLKYLNCSKTPSLFGTLGFKALLGSKDLEELHIGECSRIGDDAVPFIKKMKNLKILRV 369

Query: 380 ESCKVTANDIKRL 392
               ++A  +  L
Sbjct: 370 HGTSISARGMAEL 382



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 4/192 (2%)

Query: 205 LKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           LK  E++D+ +  + L  LS GL  +  IN  F+ ++  +   ++ LS L+ L L + ++
Sbjct: 69  LKPSEINDSAI--TQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRV 126

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
           T+     +  L  L  L L    + D G A L    NL+SLE+    LT AG + I    
Sbjct: 127 TNEACEKIAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFP 186

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           +L  L + +  NL D +L+L+     LVSL +SN+ IT  GL  L  L  +  L      
Sbjct: 187 ALEYLEI-RRTNLDDVSLDLVCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETG 245

Query: 384 VTANDIKRLQSR 395
           +    +   Q R
Sbjct: 246 IHGWGLAHAQKR 257



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 132/299 (44%), Gaps = 37/299 (12%)

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           +GL ++  +N  + + +T +    +S L+ L+ L++S ++VT+     +  L  L +L L
Sbjct: 87  EGLNEITEINADF-STVTSAAFASISKLSKLRQLRLSSTRVTNEACEKIAELPALEVLIL 145

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
               V    + +LS L +L  L L+RC L+  G +      +L+ L +    + D  L  
Sbjct: 146 SDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPALEYLEIRRTNLDDVSLDL 205

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLES 231
           +     L SL L +  I D+GL  L  L  ++ LE ++T +   GL H     G  NL+ 
Sbjct: 206 VCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETGIHGWGLAHAQKRGGGKNLKE 265

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLD--------- 281
           ++L    +     + +    S++ L L +  Q+ D GL  +T + G+ +L          
Sbjct: 266 LSLFKCPLDGMGAKAIGNFKSVEKLVLGEIPQLDDEGL--MTMVRGMKNLKYLNCSKTPS 323

Query: 282 LFG---------------------ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
           LFG                     +RI D    +++  KNL+ L + G  ++  G+  +
Sbjct: 324 LFGTLGFKALLGSKDLEELHIGECSRIGDDAVPFIKKMKNLKILRVHGTSISARGMAEL 382



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 33/231 (14%)

Query: 26  GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 85
           G+ A + L NL  L+L RC     G   +     LE L I+  N + D  +  +     L
Sbjct: 154 GVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPALEYLEIRRTN-LDDVSLDLVCNAKTL 212

Query: 86  KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQ 142
            SL++S + +TD G+  L  L  + +L      +    L      G   +L  L+L +C 
Sbjct: 213 VSLRLSNNPITDQGLDALGKLPGIEVLEFNETGIHGWGLAHAQKRGGGKNLKELSLFKCP 272

Query: 143 LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHL-KGLTNL------------------- 181
           L   G +      S++ L LG   ++ DE L+ + +G+ NL                   
Sbjct: 273 LDGMGAKAIGNFKSVEKLVLGEIPQLDDEGLMTMVRGMKNLKYLNCSKTPSLFGTLGFKA 332

Query: 182 -------ESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
                  E L++  C  IGD+ +  +  + NLK L +  T + + G+  L+
Sbjct: 333 LLGSKDLEELHIGECSRIGDDAVPFIKKMKNLKILRVHGTSISARGMAELA 383


>gi|51850115|dbj|BAD42399.1| leucine-rich repeat protein [Ralstonia solanacearum]
          Length = 1035

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 142/314 (45%), Gaps = 1/314 (0%)

Query: 20   NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
            N I   G +A      L  LD+      + G   L     L SL ++    I D  ++ L
Sbjct: 691  NGIGTAGAEALGRNTVLTALDISANPIRNAGAQALASSRSLTSLELR-DTGIEDGGIEAL 749

Query: 80   SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
            +  T L+SL IS + ++D   A L   + LT L   GC +T      L+ + SL  L + 
Sbjct: 750  AANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLEVG 809

Query: 140  RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
               + D G    ++  SL+ LNL  N IT + L  L     L+SL++   G GD G + L
Sbjct: 810  SNSIGDAGVLTIARNASLRSLNLSRNSITPQGLYPLALSRTLKSLDVSRIGCGDRGALLL 869

Query: 200  TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
            +G   L  L+L   ++ S G R L+    L S++L    I   + R LA    L SLN+ 
Sbjct: 870  SGNRALTSLKLGFNRISSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLNVS 929

Query: 260  ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
              ++ D    AL     LT LD+   R++   A  L +   L SL+I    +   G + +
Sbjct: 930  DCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALADNPVLASLDISHNDIGPEGAQAL 989

Query: 320  KDLSSLTLLNLSQN 333
             D +SLT+L+   N
Sbjct: 990  ADSASLTILDARAN 1003



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 106/211 (50%), Gaps = 2/211 (0%)

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           +++  L +L  L  L SL+L   GIG+ G   L    +L  L LS   +G++G   L   
Sbjct: 646 VSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAASASLTSLNLSGNGIGTAGAEALGRN 704

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
           T L ++++S   I +   + LA   SL SL L    I D G+ AL + T L  LD+ G  
Sbjct: 705 TVLTALDISANPIRNAGAQALASSRSLTSLELRDTGIEDGGIEALAANTVLRSLDISGND 764

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           ++D  AA L   + L SL+  G GLT+   + +  + SL  L +  N ++ D  +  I+ 
Sbjct: 765 LSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLEVGSN-SIGDAGVLTIAR 823

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
              L SLN+S + IT  GL  L   + L+SL
Sbjct: 824 NASLRSLNLSRNSITPQGLYPLALSRTLKSL 854



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 149/337 (44%), Gaps = 54/337 (16%)

Query: 98  SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC---QLSDDGCEKFSKI 154
           +  + L+    L  L+  G P++ A L +L    S+ +L+L+ C    +S+ G    +++
Sbjct: 601 AAFSRLRNYPALESLSFHG-PLSLADLRALPP--SVRHLDLSGCTGSAVSEAGLAYLARL 657

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
             L  L+L    I +     L    +L SLNL   GIG  G   L     L  L++S   
Sbjct: 658 -PLASLDLSDTGIGNRGAQALAASASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANP 716

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           + ++G + L+   +L S+ L  TGI DG +  LA  + L+SL++    ++D   AAL + 
Sbjct: 717 IRNAGAQALASSRSLTSLELRDTGIEDGGIEALAANTVLRSLDISGNDLSDQSAAALAAN 776

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
             LT L   G  +T+  A  L   ++LR+LE+    + DAGV  I   +SL  LNLS+N 
Sbjct: 777 RTLTSLKANGCGLTNDMAQQLARIRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNS 836

Query: 335 -----------NLTDKTLE------------LISGLTGLVSLNVSNSRITSAGLRHLKP- 370
                      + T K+L+            L+SG   L SL +  +RI+S G R L   
Sbjct: 837 ITPQGLYPLALSRTLKSLDVSRIGCGDRGALLLSGNRALTSLKLGFNRISSEGARRLAAN 896

Query: 371 -----------------------LKNLRSLTLESCKV 384
                                   + L SL +  C++
Sbjct: 897 RTLVSLDLRGNTIDVAAARALANAEPLASLNVSDCRL 933



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 6/226 (2%)

Query: 171 CLVHLKGLT-NLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
            L  L+ L  ++  L+L  C    + + GL  L  L  L  L+LSDT +G+ G + L+  
Sbjct: 622 SLADLRALPPSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAAS 680

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
            +L S+NLS  GI       L   + L +L++ A  I + G  AL S   LT L+L    
Sbjct: 681 ASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALASSRSLTSLELRDTG 740

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           I D G   L     LRSL+I G  L+D     +    +LT L  +  C LT+   + ++ 
Sbjct: 741 IEDGGIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLAR 799

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           +  L +L V ++ I  AG+  +    +LRSL L    +T   +  L
Sbjct: 800 IRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNSITPQGLYPL 845



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 137/332 (41%), Gaps = 67/332 (20%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           D + LSGL +   L+            +LKG    TL +L+  P T            L 
Sbjct: 94  DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 129

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           +L+L+ C             GS K             + +L GL  LESLN+    IGD 
Sbjct: 130 HLDLSEC------------TGSAKSF---------RAIAYLAGLP-LESLNVAGAEIGDG 167

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           G   L    +LK L  +   + +SG R L+    LES++L+   I D   + LAG  SL+
Sbjct: 168 GARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLR 227

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDL------------------FGARITDSGAAYLR 296
            L +    +TD G  AL     L  LDL                      IT  GA  L 
Sbjct: 228 HLAVRNGLVTDVGTRALALNPALVSLDLGNLVTETGNQVEQDGYDKTANNITAQGAWALA 287

Query: 297 NFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
             ++L+SL + G  L  D GV+ +    +LT LN++   N+T  + + ++    L SL+V
Sbjct: 288 QNRSLKSLSVQGNDLCGDDGVRALARNRTLTSLNVAF-TNMTSASAKALADNPVLTSLSV 346

Query: 356 S-NSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
             N  +  AG   L   ++L SL      ++A
Sbjct: 347 RWNYGLDDAGAMELARSRSLTSLDARDTGMSA 378



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 121/278 (43%), Gaps = 27/278 (9%)

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           SL +S + +  +G   L     LT L++   P+  A   +L++  SL  L L    + D 
Sbjct: 685 SLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALASSRSLTSLELRDTGIEDG 744

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           G E  +    L+ L++  N+++D+    L     L SL  + CG+ ++    L  + +L+
Sbjct: 745 GIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLR 804

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            LE+    +G +G+     LT                   +A  +SL+SLNL    IT  
Sbjct: 805 TLEVGSNSIGDAGV-----LT-------------------IARNASLRSLNLSRNSITPQ 840

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
           GL  L     L  LD+      D GA  L   + L SL++    ++  G + +   ++ T
Sbjct: 841 GLYPLALSRTLKSLDVSRIGCGDRGALLLSGNRALTSLKLGFNRISSEGARRLA--ANRT 898

Query: 327 LLNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRITSA 363
           L++L    N  D      ++    L SLNVS+ R+  A
Sbjct: 899 LVSLDLRGNTIDVAAARALANAEPLASLNVSDCRLDDA 936



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 2/230 (0%)

Query: 1    MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
            M + L+ + +L +L    +N+I   G+   A   +L  L+L R +    GL  L     L
Sbjct: 793  MAQQLARIRSLRTLEVG-SNSIGDAGVLTIARNASLRSLNLSRNSITPQGLYPLALSRTL 851

Query: 61   ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            +SL++    C  D     LSG   L SL++  ++++  G   L   + L  L+L G  + 
Sbjct: 852  KSLDVSRIGC-GDRGALLLSGNRALTSLKLGFNRISSEGARRLAANRTLVSLDLRGNTID 910

Query: 121  AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
             A   +L+    L  LN++ C+L D      ++  +L  L++ +N ++      L     
Sbjct: 911  VAAARALANAEPLASLNVSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALADNPV 970

Query: 181  LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
            L SL++    IG EG   L    +L  L+    ++G +G R L   T + 
Sbjct: 971  LASLDISHNDIGPEGAQALADSASLTILDARANRIGEAGARLLEANTRMR 1020


>gi|326679785|ref|XP_002660968.2| PREDICTED: hypothetical protein LOC100332407 [Danio rerio]
          Length = 537

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 159/325 (48%), Gaps = 29/325 (8%)

Query: 98  SGIAYLKGLQKLTLLNLEGCPV-----------TAACLDSLSALGSLFYLN-LNRCQLSD 145
           S +A  + L+  TL    GCP+           T   L  L A   L +L+ LN   ++D
Sbjct: 118 SHMARERLLRPRTLELFFGCPLQKFVLNCYPYTTNELLRQLRAFTCLKHLSFLNSPLITD 177

Query: 146 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-----NL 199
            G    S +  L+ LNL   +++TD CL H+ GL +L  L LD   + D GL+       
Sbjct: 178 AGLSVLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLTFLALDQTKVSDAGLLLYLQSGS 237

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           + LC L    L+ T +  S LR L   +  L  +++  T +SD S   LA L +L++L+L
Sbjct: 238 SALCQL---SLNQTAITESTLRVLPASVPQLRMLSIKHTKVSDVS--ALAELKNLQTLHL 292

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAG 315
           D   + +  L  L S   L+ L L G  + D G   L     LR  ++   G   +TD+G
Sbjct: 293 DGTGVQENSLQCLASHPSLSALSLAGIPVAD-GNHTLEIIAGLRLTQLTLPGRHSVTDSG 351

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
           +  +   + L  L+L+    LTD  +  +S +T L  L++SN++++ +GL+ L  LK L+
Sbjct: 352 LSFLSRQTLLLELDLTDYTQLTDHGITQLSSMTRLKKLSLSNTQVSDSGLQGLIRLKELQ 411

Query: 376 SLTLESCKVTANDIKRLQSRDLPNL 400
            L L+   VT+  +  L +  LP+L
Sbjct: 412 ELCLDRTAVTSRGVAALITH-LPHL 435



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 162/351 (46%), Gaps = 51/351 (14%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IAYLK-GL 106
            GL  L  L KL+ LN+  C+ +TDS ++ ++GL +L  L +  +KV+D+G + YL+ G 
Sbjct: 178 AGLSVLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLTFLALDQTKVSDAGLLLYLQSGS 237

Query: 107 QKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
             L  L+L    +T + L  L A +  L  L++   ++SD      +++ +L+ L+L   
Sbjct: 238 SALCQLSLNQTAITESTLRVLPASVPQLRMLSIKHTKVSD--VSALAELKNLQTLHLDGT 295

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-------------- 211
            + +  L  L    +L +L+L    + D G   L  +  L+  +L+              
Sbjct: 296 GVQENSLQCLASHPSLSALSLAGIPVAD-GNHTLEIIAGLRLTQLTLPGRHSVTDSGLSF 354

Query: 212 --------------DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
                          TQ+   G+  LS +T L+ ++LS T +SD  L+ L  L  L+ L 
Sbjct: 355 LSRQTLLLELDLTDYTQLTDHGITQLSSMTRLKKLSLSNTQVSDSGLQGLIRLKELQELC 414

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR----NFKNLRSLEICGGGLTD 313
           LD   +T  G+AAL  +T L HL + G   T  G   +R    +   L  L +    +TD
Sbjct: 415 LDRTAVTSRGVAAL--ITHLPHLQVMGLASTQVGDTVIRRGLVHCPQLLKLNLSRTRITD 472

Query: 314 AGVKHIKDLSSLTLLNLSQ-NCNLTDKTL----ELISGLTGLVSLNVSNSR 359
            G+K       L  + LSQ N + T  TL     LIS    L S+  S++R
Sbjct: 473 QGLKF------LCRMQLSQVNLDGTGVTLVGIANLISACPHLSSVRASHTR 517



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 152/310 (49%), Gaps = 15/310 (4%)

Query: 69  NCI---TDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 123
           NC    T+  ++ L   T LK L    S  +TD+G++ L  L KL  LNL  C  +T +C
Sbjct: 145 NCYPYTTNELLRQLRAFTCLKHLSFLNSPLITDAGLSVLSNLSKLQHLNLSSCSKLTDSC 204

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE--ITDECLVHLKG-LTN 180
           L  ++ L SL +L L++ ++SD G   + + GS  +  L  N+  IT+  L  L   +  
Sbjct: 205 LQHITGLRSLTFLALDQTKVSDAGLLLYLQSGSSALCQLSLNQTAITESTLRVLPASVPQ 264

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  L++    + D  +  L  L NL+ L L  T V  + L+ L+   +L +++L+   ++
Sbjct: 265 LRMLSIKHTKVSD--VSALAELKNLQTLHLDGTGVQENSLQCLASHPSLSALSLAGIPVA 322

Query: 241 DG--SLRKLAGLSSLKSLNLDARQ-ITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLR 296
           DG  +L  +AGL  L  L L  R  +TD+GL+ L+     L        ++TD G   L 
Sbjct: 323 DGNHTLEIIAGLR-LTQLTLPGRHSVTDSGLSFLSRQTLLLELDLTDYTQLTDHGITQLS 381

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           +   L+ L +    ++D+G++ +  L  L  L L +    +     LI+ L  L  + ++
Sbjct: 382 SMTRLKKLSLSNTQVSDSGLQGLIRLKELQELCLDRTAVTSRGVAALITHLPHLQVMGLA 441

Query: 357 NSRITSAGLR 366
           ++++    +R
Sbjct: 442 STQVGDTVIR 451


>gi|87309591|ref|ZP_01091725.1| probable G protein-coupled receptor [Blastopirellula marina DSM
           3645]
 gi|87287355|gb|EAQ79255.1| probable G protein-coupled receptor [Blastopirellula marina DSM
           3645]
          Length = 328

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           +TD+    L  L +L+ L ++ S VTD  +  +  L +L  L LE   VT+A + +L++ 
Sbjct: 80  MTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAGVAALASC 139

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
             L  L L  C + DD  E   ++ +L +L+L    ITD  + HL+ L +L++L L    
Sbjct: 140 EKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLRDTA 199

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           +  EG   L    +L+ ++LSD  +  S +  L    NLE + L  T ++D  L +    
Sbjct: 200 VTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTDELLPEFIDT 259

Query: 251 -----SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
                  L+ L +    ITD  L  L  L  L  L +   R T
Sbjct: 260 LIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRET 302



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 6/241 (2%)

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 209
           ++   G++  L      +TD    HL  L +L+ LNL+  G+ D+ L  +  L  L+ L 
Sbjct: 63  EYDDQGAVVELRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLY 122

Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 269
           L  T V S+G+  L+    LE + L+   I D +L  +  L +L  L+L    ITD G+ 
Sbjct: 123 LERTAVTSAGVAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMF 182

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
            L SL  L  L L    +T  G A L++  +LR +++    +  + ++ ++   +L  L 
Sbjct: 183 HLQSLPHLKTLYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLY 242

Query: 330 LSQNCNLTDKTL-ELISGL----TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           L +  +LTD+ L E I  L      L  L +    IT   L  LK L  L  L +   + 
Sbjct: 243 LGR-TSLTDELLPEFIDTLIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRE 301

Query: 385 T 385
           T
Sbjct: 302 T 302



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 105/239 (43%), Gaps = 12/239 (5%)

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
           G++  L  N  +++D+       + SL+ LNL  + +TD+ L  +  L  L SL L+   
Sbjct: 68  GAVVELRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTA 127

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           +   G+  L     L+ L L++  +    L  +  L  L  ++LS T I+D  +  L  L
Sbjct: 128 VTSAGVAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSL 187

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
             LK+L L    +T  G A L S T L  +DL    I  S    LR+F NL  L +    
Sbjct: 188 PHLKTLYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTS 247

Query: 311 LTDAGVKHIKDLSSLTLLNLSQN--------CNLTDKTLELISGLTGLVSLNVSNSRIT 361
           LTD  +    D    TL+  + +          +TD +L  +  L  L  L V + R T
Sbjct: 248 LTDELLPEFID----TLIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRET 302



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 84/178 (47%)

Query: 88  LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 147
           L+ + +++TD+  ++L  LQ L  LNL    VT   L+ + AL  L  L L R  ++  G
Sbjct: 73  LRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAG 132

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
               +    L+ L L    I D+ L  +  L  L  L+L    I D G+ +L  L +LK 
Sbjct: 133 VAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKT 192

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
           L L DT V   G   L   T+L  I+LS   I+  ++  L    +L+ L L    +TD
Sbjct: 193 LYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTD 250



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L  ++ ++TD   + L  L  L  L+L  + +TD     +     LRSL +    +T AG
Sbjct: 73  LRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAG 132

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
           V  +     L  L L++ C + D  LE I  L  L  L++S + IT AG+ HL+ L +L+
Sbjct: 133 VAALASCEKLEELMLTE-CAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLK 191

Query: 376 SLTLESCKVTANDIKRLQS 394
           +L L    VT      L+S
Sbjct: 192 TLYLRDTAVTGEGFAMLKS 210



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 33/237 (13%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
            + +T + ++    L  L  L LER      G+  L    KLE L +  C  I D  ++ 
Sbjct: 101 QSGVTDKSLEIMGALPELRSLYLERTAVTSAGVAALASCEKLEELMLTEC-AIQDDALET 159

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +  L  L  L +S + +TD+G+ +L+ L  L  L L    VT                  
Sbjct: 160 IGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLRDTAVTG----------------- 202

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
                  +G         L++++L  N I    +  L+   NLE L L    + DE L  
Sbjct: 203 -------EGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTDELLPE 255

Query: 199 L--------TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
                      L  L  +E+  T    + L+ L+ L +L  ++   TG++ G+ ++L
Sbjct: 256 FIDTLIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRETGVTRGAFQEL 312


>gi|290993827|ref|XP_002679534.1| predicted protein [Naegleria gruberi]
 gi|284093151|gb|EFC46790.1| predicted protein [Naegleria gruberi]
          Length = 305

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 17/197 (8%)

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L G+ NL  L +S  Q+G  G + +SG+  LE + L F  +     + ++ + +L SL +
Sbjct: 40  LQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKLILVFNNVGTEGAKYISEMENLTSLII 99

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG--------- 309
            +  I D G   L+ +  LT+LD+    I + G   +RN   LRS   CG          
Sbjct: 100 RSNNIGDEGAIHLSGMKKLTNLDVSDNMIREDGMRAIRNMTQLRSFVDCGSCALEEVSKM 159

Query: 310 -GLTDAGVKH------IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
             LT   V H      I   ++LT L++   C + D  LELIS    L  L VSN+ ITS
Sbjct: 160 DQLTYLDVSHNLSGAAIGKFNNLTWLSMVNTC-IGDNELELISKYPKLTKLFVSNNFITS 218

Query: 363 AGLRHLKPLKNLRSLTL 379
            G++ L  +K L++L +
Sbjct: 219 EGVKPLSEMKQLKALHI 235



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 133/284 (46%), Gaps = 11/284 (3%)

Query: 102 YLKGLQKLTLLNLEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160
           +L  + +L +  L+   +       +L  + +L  LN++  Q+  +G +  S +  L+ L
Sbjct: 14  FLGNIHRLMIYKLDDNAIYGEVFYRALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKL 73

Query: 161 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
            L FN +  E   ++  + NL SL + S  IGDEG ++L+G+  L  L++SD  +   G+
Sbjct: 74  ILVFNNVGTEGAKYISEMENLTSLIIRSNNIGDEGAIHLSGMKKLTNLDVSDNMIREDGM 133

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           R +  +T L     SF      +L +++ +  L  L++      +   AA+     LT L
Sbjct: 134 RAIRNMTQLR----SFVDCGSCALEEVSKMDQLTYLDVSH----NLSGAAIGKFNNLTWL 185

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
            +    I D+    +  +  L  L +    +T  GVK + ++  L  L++  N  + ++ 
Sbjct: 186 SMVNTCIGDNELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDN-GINEEG 244

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCK 383
           +++IS +  L  LNV    I+      L  +K  L+SL +  C+
Sbjct: 245 VKIISEMKQLTELNVEGLNISENDREVLLCMKSQLKSLNITGCE 288



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 124/249 (49%), Gaps = 12/249 (4%)

Query: 19  NNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 77
           +NAI  +   +A  G+ NL  L++        G   + G+ +LE L + + N  T+   K
Sbjct: 28  DNAIYGEVFYRALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKLILVFNNVGTEG-AK 86

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF-YL 136
            +S + NL SL I  + + D G  +L G++KLT L++    +    + ++  +  L  ++
Sbjct: 87  YISEMENLTSLIIRSNNIGDEGAIHLSGMKKLTNLDVSDNMIREDGMRAIRNMTQLRSFV 146

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           +   C L     E+ SK+  L  L++  N ++   +     LT L  +N  +C IGD  L
Sbjct: 147 DCGSCAL-----EEVSKMDQLTYLDVSHN-LSGAAIGKFNNLTWLSMVN--TC-IGDNEL 197

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
             ++    L  L +S+  + S G++ LS +  L+++++   GI++  ++ ++ +  L  L
Sbjct: 198 ELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDNGINEEGVKIISEMKQLTEL 257

Query: 257 NLDARQITD 265
           N++   I++
Sbjct: 258 NVEGLNISE 266



 Score = 39.3 bits (90), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N IT   +KPLS +  LK+L I  + + + G+  +  +++LT LN+EG  ++    + L 
Sbjct: 214 NFITSEGVKPLSEMKQLKALHIGDNGINEEGVKIISEMKQLTELNVEGLNISENDREVLL 273

Query: 129 ALGS-LFYLNLNRCQ 142
            + S L  LN+  C+
Sbjct: 274 CMKSQLKSLNITGCE 288


>gi|354478681|ref|XP_003501543.1| PREDICTED: insulin-like growth factor-binding protein complex acid
           labile subunit [Cricetulus griseus]
          Length = 603

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 172/411 (41%), Gaps = 41/411 (9%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMK 59
            + L GL NL  L   RN  + +     F    NL  L L      R+  GL   +GL  
Sbjct: 115 PQALLGLQNLYHLHLERN-LLRSLAAGLFTHTPNLASLSLGNNLLGRLEDGL--FQGLGH 171

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-------------- 105
           L  LN+ W + +   DM    GL NL+ L ++ +K     +AYL+               
Sbjct: 172 LWDLNLGWNSLVVLPDMV-FQGLGNLRELVLAGNK-----LAYLQPSLFCGLGELRELDL 225

Query: 106 ---------------LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 150
                          L +L  L L+   VTA    +   + +L +L+L+  +++    + 
Sbjct: 226 SRNALRSVKANVFIHLPRLQKLYLDRNFVTAVAPGAFLGMKALRWLDLSHNRVAGLLEDT 285

Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
           F  +  L VL L  N IT       K L  LE L L    I   G     GL  L+ L L
Sbjct: 286 FPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFEGLGQLEVLTL 345

Query: 211 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 270
           +D Q+    +   SGL N+  +NLS   + +   R   GLS L SL+L+   +    L  
Sbjct: 346 NDNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERVFQGLSKLHSLHLEHSCLGRIRLHT 405

Query: 271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
            T L+GL  L L G  I+ +    L     L  L++    LT    +  + L  L  L L
Sbjct: 406 FTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQLTHLPRRLFQGLGQLEYLLL 465

Query: 331 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           S N  L+  + +++S L  +  L++S++R+ +       PL  LR L+L +
Sbjct: 466 SNN-RLSALSEDVLSPLQRVFWLDISHNRLEALSEGLFSPLGRLRYLSLRN 515



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 153/395 (38%), Gaps = 31/395 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG-----LMK 59
             GL NL  L    N     Q    F GL  L +LDL R       L ++K      L +
Sbjct: 190 FQGLGNLRELVLAGNKLAYLQP-SLFCGLGELRELDLSR-----NALRSVKANVFIHLPR 243

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L+ L +   N +T        G+  L+ L +S ++V         GL  L +L L    +
Sbjct: 244 LQKLYLD-RNFVTAVAPGAFLGMKALRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAI 302

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
           T+    +   L  L  L L   ++   G + F  +G L+VL L  N+I +  +    GL 
Sbjct: 303 TSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFEGLGQLEVLTLNDNQIHEVKMGAFSGLF 362

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           N+  +NL    + +       GL  L  L L  + +G   L   +GL+ L  + L    I
Sbjct: 363 NVAVMNLSGNCLRNLPERVFQGLSKLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSI 422

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           S    + LAGLS L  L+L A Q+T         L  L +L L   R++      L   +
Sbjct: 423 SITEEQSLAGLSELLELDLTANQLTHLPRRLFQGLGQLEYLLLSNNRLSALSEDVLSPLQ 482

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL----NV 355
            +  L+I    L          L  L  L+L  N      +L+  S   GL  L    N 
Sbjct: 483 RVFWLDISHNRLEALSEGLFSPLGRLRYLSLRNN------SLQTFSPQPGLERLWLDANP 536

Query: 356 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
            + R          PLK LR   L++  +    ++
Sbjct: 537 WDCRC---------PLKALRDFALQNPSIVPRFVQ 562


>gi|428173790|gb|EKX42690.1| hypothetical protein GUITHDRAFT_73681, partial [Guillardia theta
           CCMP2712]
          Length = 439

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 177/402 (44%), Gaps = 29/402 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            SGLS L  L    N A+       F GL +L +L +        G    KGL  L++L+
Sbjct: 38  FSGLSALQFLQLHHN-ALLNLPSNVFDGLSSLQQLYVHNNVLSTLGPNTFKGLASLQNLD 96

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           + + N ++       +G ++L++L +  +K+T+      +GL  L  L L    +++   
Sbjct: 97  LSY-NQLSTLPPDSFNGSSSLQTLSLFSNKITNISSDAFRGLPGLKYLGLFDNQLSSLSE 155

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
              S L  L  L+L   +++      FS +  L+ L+L  N+I+D  L    GL+ L++L
Sbjct: 156 GVFSGLSGLQILSLYNNRVTSLPSNAFSGLSVLQELDLNNNQISDISLSAFNGLSGLKTL 215

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           NL+S  +         GL  L+ L+L   ++ S  +    GL+ LE +++SF  +     
Sbjct: 216 NLNSNQLSSLPSNAFFGLSALQQLQLDGNRISSISMDAFDGLSALEELHMSFNQLQTVLS 275

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD------SGAAYLRN- 297
               GLS+LK L++   QI+     A   LT LT L L G ++T        G  YL + 
Sbjct: 276 SNFNGLSALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTSIPAGVFDGLQYLESL 335

Query: 298 -------------------FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
                              F NL  L +    LT   +     LS L  L LS N ++ +
Sbjct: 336 ILSSNQLECISSNAFASLLFLNLEELYLSYNQLTSLPLGVFNGLSKLVTLTLSNN-HVKE 394

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
               + +GL+ L  LN+ ++ + S  L     L +L  +TLE
Sbjct: 395 LPAGVFNGLSSLKFLNLGHNELESLPLNLFDGLTSLEQVTLE 436



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 148/308 (48%), Gaps = 5/308 (1%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
            SGL+ L+ LQ+  + + +       GL  L  L +    ++    ++   L SL  L+L
Sbjct: 38  FSGLSALQFLQLHHNALLNLPSNVFDGLSSLQQLYVHNNVLSTLGPNTFKGLASLQNLDL 97

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGL 196
           +  QLS    + F+   SL+ L+L  N+IT+      +GL  L+ L L    +    EG+
Sbjct: 98  SYNQLSTLPPDSFNGSSSLQTLSLFSNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEGV 157

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
              +GL  L+ L L + +V S      SGL+ L+ ++L+   ISD SL    GLS LK+L
Sbjct: 158 --FSGLSGLQILSLYNNRVTSLPSNAFSGLSVLQELDLNNNQISDISLSAFNGLSGLKTL 215

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
           NL++ Q++     A   L+ L  L L G RI+            L  L +    L     
Sbjct: 216 NLNSNQLSSLPSNAFFGLSALQQLQLDGNRISSISMDAFDGLSALEELHMSFNQLQTVLS 275

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
            +   LS+L LL++ QN  ++  +    +GLT L SL+++ +++TS        L+ L S
Sbjct: 276 SNFNGLSALKLLDI-QNNQISSISSGAFNGLTALTSLSLNGNKLTSIPAGVFDGLQYLES 334

Query: 377 LTLESCKV 384
           L L S ++
Sbjct: 335 LILSSNQL 342



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 167/386 (43%), Gaps = 37/386 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK-----GLMK 59
            +GLS+L +L    NN +++     F+GL  L  L L      H  L+NL      GL  
Sbjct: 14  FNGLSSLQTLELS-NNRLSSLSEGVFSGLSALQFLQLH-----HNALLNLPSNVFDGLSS 67

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L+ L +   N ++        GL +L++L +S ++++        G   L  L+L    +
Sbjct: 68  LQQLYVH-NNVLSTLGPNTFKGLASLQNLDLSYNQLSTLPPDSFNGSSSLQTLSLFSNKI 126

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
           T    D+   L  L YL L   QLS      FS +  L++L+L  N +T        GL+
Sbjct: 127 TNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSNAFSGLS 186

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS---------SGLRHLS------ 224
            L+ L+L++  I D  L    GL  LK L L+  Q+ S         S L+ L       
Sbjct: 187 VLQELDLNNNQISDISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQLDGNRI 246

Query: 225 ---------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
                    GL+ LE +++SF  +         GLS+LK L++   QI+     A   LT
Sbjct: 247 SSISMDAFDGLSALEELHMSFNQLQTVLSSNFNGLSALKLLDIQNNQISSISSGAFNGLT 306

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            LT L L G ++T   A      + L SL +    L          L  L L  L  + N
Sbjct: 307 ALTSLSLNGNKLTSIPAGVFDGLQYLESLILSSNQLECISSNAFASLLFLNLEELYLSYN 366

Query: 336 -LTDKTLELISGLTGLVSLNVSNSRI 360
            LT   L + +GL+ LV+L +SN+ +
Sbjct: 367 QLTSLPLGVFNGLSKLVTLTLSNNHV 392



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 20/242 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
            +GLS L +L+   N  +++    AF GL  L +L L+  R + I   +    GL  LE 
Sbjct: 206 FNGLSGLKTLNLNSN-QLSSLPSNAFFGLSALQQLQLDGNRISSI--SMDAFDGLSALEE 262

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-- 120
           L++ + N +        +GL+ LK L I  ++++        GL  LT L+L G  +T  
Sbjct: 263 LHMSF-NQLQTVLSSNFNGLSALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTSI 321

Query: 121 -AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-----GFNEITDECLVH 174
            A   D L  L SL    L+  QL    C   +   SL  LNL      +N++T   L  
Sbjct: 322 PAGVFDGLQYLESLI---LSSNQLE---CISSNAFASLLFLNLEELYLSYNQLTSLPLGV 375

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
             GL+ L +L L +  + +       GL +LK L L   ++ S  L    GLT+LE + L
Sbjct: 376 FNGLSKLVTLTLSNNHVKELPAGVFNGLSSLKFLNLGHNELESLPLNLFDGLTSLEQVTL 435

Query: 235 SF 236
            +
Sbjct: 436 EW 437


>gi|315301494|ref|ZP_07872641.1| internalin A, partial [Listeria ivanovii FSL F6-596]
 gi|313630136|gb|EFR98122.1| internalin A [Listeria ivanovii FSL F6-596]
          Length = 759

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 164/355 (46%), Gaps = 64/355 (18%)

Query: 4   NLSGLSNLTSLS----FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG----LVNLK 55
           +L+ L NLTSL+    F   N IT   +   A L NL  L       I G     L  + 
Sbjct: 134 DLTPLQNLTSLTDLTLFY--NKIT--DVTPLANLTNLTTL------AITGNEISDLTPIG 183

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNL 114
            L  LE+L+I   N +TD  +KPL  LTNL+ L +S +K+TD S +A L  LQ LTL N 
Sbjct: 184 SLTNLEALSI--GNQVTD--IKPLDKLTNLEQLNLSDNKITDISPVAKLINLQSLTLDNN 239

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
           +   +T      L  L +L  L+L    LSD G    + + +LK LNL  N+I++  L  
Sbjct: 240 QFSDLTP-----LGILTNLTELSLYSNHLSDIGT--LASLTNLKKLNLMDNQISN--LAP 290

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +  LTNL  LN+ +  I D  L  ++ L NL  L++   QV    +  +S LTNL+ + L
Sbjct: 291 ISNLTNLTDLNVSTNQISD--LKPISNLTNLTVLQVPTNQV--EDISPISSLTNLDFLTL 346

Query: 235 SFTGISDGS--------------------LRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
               ISD S                    +  LA L++L+ L+    QI+D  L  L  L
Sbjct: 347 YSNQISDISPLENLTKLKQLFFYDNKVSDVSPLANLTTLQELSAGTNQISD--LTPLAKL 404

Query: 275 TGLTHLDLFGARITDSGAAYLRNF------KNLRSLEICGGGLTDAGVKHIKDLS 323
           T LT L L   ++T     Y  N       KN+    I    ++D G     D++
Sbjct: 405 TRLTQLGLDKQKVTSQPVKYQSNIVVPNAVKNVTGALINPATISDNGTYTNPDIT 459



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 180/387 (46%), Gaps = 60/387 (15%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAG---LINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L  +TSL   RN       +K+ AG   L N+ +L+       +  + +L  L  L  
Sbjct: 73  TDLDGITSLEADRN------VIKSIAGVEYLNNVTQLNFS-----YNQITDLTPLANLSK 121

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L     N    +D+ PL  LT+L  L +  +K+TD  +  L  L  LT L + G  ++  
Sbjct: 122 LTSLVMNNNQVADLTPLQNLTSLTDLTLFYNKITD--VTPLANLTNLTTLAITGNEIS-- 177

Query: 123 CLDSLSALGSLFYL-------------------NLNRCQLSDDGCEKFSKIG---SLKVL 160
               L+ +GSL  L                   NL +  LSD+     S +    +L+ L
Sbjct: 178 ---DLTPIGSLTNLEALSIGNQVTDIKPLDKLTNLEQLNLSDNKITDISPVAKLINLQSL 234

Query: 161 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
            L  N+ +D  L  L  LTNL  L+L S  + D G   L  L NLK L L D Q+  S L
Sbjct: 235 TLDNNQFSD--LTPLGILTNLTELSLYSNHLSDIGT--LASLTNLKKLNLMDNQI--SNL 288

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
             +S LTNL  +N+S   ISD  L+ ++ L++L  L +   Q+ D  ++ ++SLT L  L
Sbjct: 289 APISNLTNLTDLNVSTNQISD--LKPISNLTNLTVLQVPTNQVED--ISPISSLTNLDFL 344

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
            L+  +I+D     L N   L+ L      ++D  V  + +L++L  L+   N  ++D  
Sbjct: 345 TLYSNQISDISP--LENLTKLKQLFFYDNKVSD--VSPLANLTTLQELSAGTN-QISD-- 397

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRH 367
           L  ++ LT L  L +   ++TS  +++
Sbjct: 398 LTPLAKLTRLTQLGLDKQKVTSQPVKY 424


>gi|397781344|ref|YP_006545817.1| Internalin-A [Methanoculleus bourgensis MS2]
 gi|396939846|emb|CCJ37101.1| Internalin-A [Methanoculleus bourgensis MS2]
          Length = 2759

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 89/254 (35%), Positives = 134/254 (52%), Gaps = 21/254 (8%)

Query: 40   DLERCTRIHG---GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 96
            D+   TR+     G+ +L GL    +L   + +    SD+ PL+GLTNL++L +  ++V+
Sbjct: 1506 DMATLTRLSAAGRGIRDLSGLEYAVNLQTLYISNNQISDLSPLAGLTNLQTLWLQDNQVS 1565

Query: 97   D-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 155
            D S +A L  LQ+L L   +   V+      L+ L +L  L L   Q+SD      + + 
Sbjct: 1566 DLSPLAGLTNLQRLWLNQNQIRDVS-----PLAGLTNLRELLLAVNQISD--LSPLAGLT 1618

Query: 156  SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
            +L  + L  N+I+D  L  L GLTNL  + L    I D  L  L GL NL  L++S  Q+
Sbjct: 1619 NLGYVQLYRNQISD--LSPLAGLTNLGYVQLYRNQISD--LSPLAGLTNLYFLDISYNQI 1674

Query: 216  GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
              S L  L+ LTNL  +++S+  ISD  +  LAGL+ L  L+LD  QI+D  ++ L  L 
Sbjct: 1675 --SDLSPLASLTNLYFLDISYNQISD--ISPLAGLTRLSRLSLDNNQISD--ISPLAGLI 1728

Query: 276  GLTHLDLFGARITD 289
             L  L+L   +I D
Sbjct: 1729 NLYVLNLNYNQIRD 1742



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 93/291 (31%), Positives = 136/291 (46%), Gaps = 39/291 (13%)

Query: 131  GSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
            G  + +NL    +S++     S +    +L+ L L  N+++D  L  L GLTNL+ L L+
Sbjct: 1525 GLEYAVNLQTLYISNNQISDLSPLAGLTNLQTLWLQDNQVSD--LSPLAGLTNLQRLWLN 1582

Query: 188  SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
               I D  +  L GL NL+ L L+  Q+  S L  L+GLTNL  + L    ISD  L  L
Sbjct: 1583 QNQIRD--VSPLAGLTNLRELLLAVNQI--SDLSPLAGLTNLGYVQLYRNQISD--LSPL 1636

Query: 248  AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
            AGL++L  + L   QI+D  L+ L  LT L  LD+   +I+D   + L +  NL  L+I 
Sbjct: 1637 AGLTNLGYVQLYRNQISD--LSPLAGLTNLYFLDISYNQISD--LSPLASLTNLYFLDI- 1691

Query: 308  GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
                       I D+S L  L      +L +  +  IS L GL++L V N  +    +R 
Sbjct: 1692 -------SYNQISDISPLAGLTRLSRLSLDNNQISDISPLAGLINLYVLN--LNYNQIRD 1742

Query: 368  LKPLK------------NLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
            + PL                 L L       NDI+ LQSR +   V + P+
Sbjct: 1743 ISPLVANSGLAGDDVYLQYNYLDLTPGSAAMNDIQTLQSRGV--YVVYEPQ 1791



 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 10/124 (8%)

Query: 195 GLVNLTGL---CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
           G+ +L+GL    NL+ L L   +   S L  L+GLT+L++++L    ISD  L  LAGL+
Sbjct: 727 GIRDLSGLEYAVNLQHLYLQQNR-QISDLGPLAGLTDLQTLDLWNNQISD--LSPLAGLT 783

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           +L  L L + QI+D G   L  LT L  L L+  +I D G   L    NL  L +    +
Sbjct: 784 NLSVLLLGSNQISDIG--PLAGLTDLQRLHLYDNQIRDIGP--LAGLTNLWELRLYNNQI 839

Query: 312 TDAG 315
            D G
Sbjct: 840 RDIG 843



 Score = 47.0 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 34/141 (24%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            L+GL+NL  +   RN       +   AGL NL  LD+                       
Sbjct: 1636 LAGLTNLGYVQLYRNQI---SDLSPLAGLTNLYFLDISY--------------------- 1671

Query: 65   IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
                N I  SD+ PL+ LTNL  L IS ++++D  I+ L GL +L+ L+L+   ++   +
Sbjct: 1672 ----NQI--SDLSPLASLTNLYFLDISYNQISD--ISPLAGLTRLSRLSLDNNQISD--I 1721

Query: 125  DSLSALGSLFYLNLNRCQLSD 145
              L+ L +L+ LNLN  Q+ D
Sbjct: 1722 SPLAGLINLYVLNLNYNQIRD 1742



 Score = 45.8 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 13/127 (10%)

Query: 25  QGMKAFAGL---INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           +G++  +GL   +NL  L L++  +I   L  L GL  L++L++ W N I  SD+ PL+G
Sbjct: 726 RGIRDLSGLEYAVNLQHLYLQQNRQI-SDLGPLAGLTDLQTLDL-WNNQI--SDLSPLAG 781

Query: 82  LTNLKSLQISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
           LTNL  L +  ++++D G +A L  LQ+L L + +        +  L+ L +L+ L L  
Sbjct: 782 LTNLSVLLLGSNQISDIGPLAGLTDLQRLHLYDNQ-----IRDIGPLAGLTNLWELRLYN 836

Query: 141 CQLSDDG 147
            Q+ D G
Sbjct: 837 NQIRDIG 843


>gi|290989752|ref|XP_002677501.1| predicted protein [Naegleria gruberi]
 gi|284091109|gb|EFC44757.1| predicted protein [Naegleria gruberi]
          Length = 340

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 144/313 (46%), Gaps = 17/313 (5%)

Query: 27  MKAFAGLINLVKLDLERC----TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 82
           +K    L  L  LD+       +R   G+  L  LM L  L I   N I D+  + +SG+
Sbjct: 20  LKKIGELSQLKTLDIANAAGDRSRFSKGIKYLGNLMNLSELYIN-SNEIGDNGAEDISGM 78

Query: 83  TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNRC 141
             L  L +S + +T  G  ++  L KL  L +E   + A  +  ++  L  L  L++   
Sbjct: 79  KQLTKLDVSSNDITTKGAKHISKLNKLVSLKMEENMIDAQGIKYITDQLNQLTELDIGSN 138

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            L   G +  S++  L  L++  N + +E   ++  L NL  L ++S  I  EG  ++  
Sbjct: 139 DLGVLGAKAVSELSQLTSLSIENNNLLNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIK 198

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L  L  L +S   +   G + +S L NL  +++S   ++D  +  ++ L  LK+L +D  
Sbjct: 199 LKQLTTLFISGNSLLDEGAKLISELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDEN 258

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           QI+D G+ ++  L  LT L++    I+  G +            I G  + D G + I D
Sbjct: 259 QISDEGIESICGLNQLTELNIDYNLISAEGLS-----------SISGNEIGDEGAEIIGD 307

Query: 322 LSSLTLLNLSQNC 334
           L++L  L + QN 
Sbjct: 308 LTNLKELTVDQNS 320



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 136/284 (47%), Gaps = 13/284 (4%)

Query: 24  AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 83
           ++G+K    L+NL +L +        G  ++ G+ +L  L++   N IT    K +S L 
Sbjct: 45  SKGIKYLGNLMNLSELYINSNEIGDNGAEDISGMKQLTKLDVS-SNDITTKGAKHISKLN 103

Query: 84  NLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 142
            L SL++  + +   GI Y+   L +LT L++    +      ++S L  L  L++    
Sbjct: 104 KLVSLKMEENMIDAQGIKYITDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNN 163

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           L ++G    S++ +L  L +  N+I  E    +  L  L +L +    + DEG   ++ L
Sbjct: 164 LLNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISEL 223

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
            NL  L++SD ++   G+  +S L  L+++ +    ISD  +  + GL+ L  LN+D   
Sbjct: 224 NNLTVLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYNL 283

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           I+  GL++++           G  I D GA  + +  NL+ L +
Sbjct: 284 ISAEGLSSIS-----------GNEIGDEGAEIIGDLTNLKELTV 316



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 149/324 (45%), Gaps = 17/324 (5%)

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS----GIAYLKGLQKLTLLNLEGCP 118
           L++K  +   DS +K +  L+ LK+L I+ +    S    GI YL  L  L+ L +    
Sbjct: 7   LDMKGVSIFKDSFLKKIGELSQLKTLDIANAAGDRSRFSKGIKYLGNLMNLSELYINSNE 66

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KG 177
           +     + +S +  L  L+++   ++  G +  SK+  L  L +  N I  + + ++   
Sbjct: 67  IGDNGAEDISGMKQLTKLDVSSNDITTKGAKHISKLNKLVSLKMEENMIDAQGIKYITDQ 126

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           L  L  L++ S  +G  G   ++ L  L  L + +  + + G  ++S L NL  + ++  
Sbjct: 127 LNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNNLLNEGAAYISRLLNLTDLCINSN 186

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I     + +  L  L +L +    + D G   ++ L  LT LD+    +TD G   +  
Sbjct: 187 QIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISELNNLTVLDISDNELTDEGVEPISK 246

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
            K L++LEI    ++D G++ I  L+ LT LN+  N         LIS   GL S  +S 
Sbjct: 247 LKQLKTLEIDENQISDEGIESICGLNQLTELNIDYN---------LISA-EGLSS--ISG 294

Query: 358 SRITSAGLRHLKPLKNLRSLTLES 381
           + I   G   +  L NL+ LT++ 
Sbjct: 295 NEIGDEGAEIIGDLTNLKELTVDQ 318



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 124/267 (46%), Gaps = 32/267 (11%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E++SG+  LT L    N+ IT +G K  + L  LV L +E        +++ +G+  +  
Sbjct: 73  EDISGMKQLTKLDVSSND-ITTKGAKHISKLNKLVSLKMEE------NMIDAQGIKYI-- 123

Query: 63  LNIKWCNCITDSDM----------KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 112
                 N +T+ D+          K +S L+ L SL I  + + + G AY+  L  LT L
Sbjct: 124 --TDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNNLLNEGAAYISRLLNLTDL 181

Query: 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
            +    + +     +  L  L  L ++   L D+G +  S++ +L VL++  NE+TDE +
Sbjct: 182 CINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISELNNLTVLDISDNELTDEGV 241

Query: 173 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
             +  L  L++L +D   I DEG+ ++ GL  L  L +    + + GL  +SG       
Sbjct: 242 EPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYNLISAEGLSSISG------- 294

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLD 259
                 I D     +  L++LK L +D
Sbjct: 295 ----NEIGDEGAEIIGDLTNLKELTVD 317



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 6/124 (4%)

Query: 277 LTHLDLFGARI-TDSGAAYLRNFKNLRSLEICGGG----LTDAGVKHIKDLSSLTLLNLS 331
           +T LD+ G  I  DS    +     L++L+I            G+K++ +L +L+ L ++
Sbjct: 4   VTWLDMKGVSIFKDSFLKKIGELSQLKTLDIANAAGDRSRFSKGIKYLGNLMNLSELYIN 63

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
            N  + D   E ISG+  L  L+VS++ IT+ G +H+  L  L SL +E   + A  IK 
Sbjct: 64  SN-EIGDNGAEDISGMKQLTKLDVSSNDITTKGAKHISKLNKLVSLKMEENMIDAQGIKY 122

Query: 392 LQSR 395
           +  +
Sbjct: 123 ITDQ 126


>gi|255523032|ref|ZP_05390004.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
 gi|255513147|gb|EET89415.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
          Length = 676

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 165/329 (50%), Gaps = 53/329 (16%)

Query: 27  MKAFAG---LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 83
           +K F+G   L NL +L+L R + I+  +  LK L+KL+S+++ +      SD+  L  LT
Sbjct: 170 IKDFSGIENLTNLKQLNL-RESEIND-ISELKNLVKLQSIDLSYNKI---SDISALKNLT 224

Query: 84  NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 143
           NLK L +  +KV D  I+ L  L  L  LNL   P          A         N  ++
Sbjct: 225 NLKKLNLGNNKVRD--ISVLSKLTNLQELNLGYIPYHDFETPDPEA---------NYNEI 273

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVN-LTG 201
           SD        + +L+ LNLG+ +I D  L  LKGL NL++L+L    I D   +VN L  
Sbjct: 274 SD--ISALKNLTNLQTLNLGYTKIKD--LNALKGLNNLKTLDLSGNQISDISSIVNVLKE 329

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L +L  L LS  ++  S +  L+ LT+L+ + L+   IS+  + +L GLS+L++L+L + 
Sbjct: 330 LTSLNDLNLSTNEI--SNIDELNKLTSLKMLKLNSNKISN--INRLKGLSNLQTLDLSSN 385

Query: 262 QITDTG---------------------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           QI+DT                      +  L  LT L  L+L+  +I+D  A  L+   N
Sbjct: 386 QISDTANTLKELNNLNDLNLSNNQISNIGELNKLTNLKALNLYYNKISDISA--LKGLSN 443

Query: 301 LRSLEICGGGLTDAGV-KHIKDLSSLTLL 328
           L+ +++    ++D  V +++ +L  L LL
Sbjct: 444 LQMIDLSYNEISDISVFENLANLRELILL 472



 Score = 38.1 bits (87), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 47/208 (22%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-----DLERCTRIHGGLVNLKGLMK 59
           L GL+NL +L       ++   +   + ++N++K      DL   T     + N+  L K
Sbjct: 301 LKGLNNLKTLD------LSGNQISDISSIVNVLKELTSLNDLNLST---NEISNIDELNK 351

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L SL +   N    S++  L GL+NL++L +S ++++D+           TL  L     
Sbjct: 352 LTSLKMLKLNSNKISNINRLKGLSNLQTLDLSSNQISDTAN---------TLKELNNLND 402

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
                + +S +G L                  +K+ +LK LNL +N+I+D  +  LKGL+
Sbjct: 403 LNLSNNQISNIGEL------------------NKLTNLKALNLYYNKISD--ISALKGLS 442

Query: 180 NLESLNLDSCGIGD----EGLVNLTGLC 203
           NL+ ++L    I D    E L NL  L 
Sbjct: 443 NLQMIDLSYNEISDISVFENLANLRELI 470


>gi|290992226|ref|XP_002678735.1| predicted protein [Naegleria gruberi]
 gi|284092349|gb|EFC45991.1| predicted protein [Naegleria gruberi]
          Length = 445

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 173/380 (45%), Gaps = 45/380 (11%)

Query: 40  DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 99
           D  + T       N+  L +L+SL I   + +     K +  L  L  L IS + +   G
Sbjct: 71  DNTKITEFTKWAANIAQLEQLKSLEISSDHKVGYDGAKVIGQLKQLTKLDISFNTIGAEG 130

Query: 100 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN---------------------- 137
             ++  +Q+LT LN+ G  +T+  +  +S L +L YLN                      
Sbjct: 131 AKFIGEMQQLTYLNIYGNSLTSEGIRFISQLTNLTYLNVRFNEDFRFGGHDKGLEGAQYL 190

Query: 138 ----------LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
                     +   Q+ +DG +   +I SL  L +  N +  E +  L  L NL  L+++
Sbjct: 191 RNLQKLTSLDIGYNQIGNDGAKFIGEIQSLTELTIRNNNLKAEGVRWLSKLKNLRLLSIN 250

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRK 246
           +  I DEG+V++  L  L  L+L +T++ + G+  +S  L  +  +++S   I DG+ + 
Sbjct: 251 NNHIKDEGVVHICKLKQLTHLDLWNTEITAEGIELVSKQLPKVTHLHISINVIRDGT-KF 309

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL----DLFGARITDSGAAYLRNFKNLR 302
           L  +  L +L  D  ++   GL  L  L  L  L    +LFGA     G   +   K L 
Sbjct: 310 LGEMKQLTTLEADEIELDAEGLKYLVGLKKLNFLSVNNNLFGAE----GCKVVSEMKQLE 365

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI-SG-LTGLVSLNVSNSRI 360
            L +    + D GV+++ +L SLT L L  N N+  + ++L+ SG L  L +L++  ++I
Sbjct: 366 ELCMNDNNIGDNGVQYLCELKSLTSLCLWNN-NIGIEGVKLLCSGNLNNLTTLDIRGNQI 424

Query: 361 TSAGLRHLKPLKNLRSLTLE 380
           T +     + +K L  L +E
Sbjct: 425 TKSDSHLFENMKQLTELLIE 444



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 148/345 (42%), Gaps = 36/345 (10%)

Query: 66  KWCNCITDSDMKP----------------LSGLTNLKSLQISCS-KVTDSGIAYLKGLQK 108
           K+ NC+TD  +                  ++ L  LKSL+IS   KV   G   +  L++
Sbjct: 56  KFKNCVTDLKLTHTADNTKITEFTKWAANIAQLEQLKSLEISSDHKVGYDGAKVIGQLKQ 115

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           LT L++    + A     +  +  L YLN+    L+ +G    S++ +L  LN+ FNE  
Sbjct: 116 LTKLDISFNTIGAEGAKFIGEMQQLTYLNIYGNSLTSEGIRFISQLTNLTYLNVRFNE-- 173

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
                                  G EG   L  L  L  L++   Q+G+ G + +  + +
Sbjct: 174 --------------DFRFGGHDKGLEGAQYLRNLQKLTSLDIGYNQIGNDGAKFIGEIQS 219

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           L  + +    +    +R L+ L +L+ L+++   I D G+  +  L  LTHLDL+   IT
Sbjct: 220 LTELTIRNNNLKAEGVRWLSKLKNLRLLSINNNHIKDEGVVHICKLKQLTHLDLWNTEIT 279

Query: 289 DSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
             G   + +    +  L I    + D G K + ++  LT L   +   L  + L+ + GL
Sbjct: 280 AEGIELVSKQLPKVTHLHISINVIRD-GTKFLGEMKQLTTLEADE-IELDAEGLKYLVGL 337

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
             L  L+V+N+   + G + +  +K L  L +    +  N ++ L
Sbjct: 338 KKLNFLSVNNNLFGAEGCKVVSEMKQLEELCMNDNNIGDNGVQYL 382


>gi|18413537|emb|CAD21866.1| hypothetical leucine-rich repeat protein 1 (LRRP1) [Trypanosoma
           brucei]
          Length = 1393

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 185/408 (45%), Gaps = 62/408 (15%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNL 85
           ++A A ++ L KL L  CT I  G+  L  L +L+ L++   N  TD++ ++ L     +
Sbjct: 476 VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTN--TDNESLRSLCLSQTV 533

Query: 86  KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
            SL +S C K+T+  ++++  L+ L  LNL  C    A  +++  L  L    L+   ++
Sbjct: 534 VSLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHIT 591

Query: 145 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLT 200
           D     FS   +L  L+L F N++ D  +  L  +T LE LNLDSC    +GL     L 
Sbjct: 592 DRDISHFSNCKNLITLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELP 649

Query: 201 GLC--NLKCLELSDTQV-----GSSGLR-------------HLSGLTNLESINLSF---- 236
            LC  N+K ++L D+ +     G+S +R              LS L  LE +NL +    
Sbjct: 650 RLCVLNIKGVQLEDSVIVSLGNGNSFVRLSLENCKGFGDVAPLSNLVTLEELNLHYCDKV 709

Query: 237 --------------------TGISDGSLRKLAGLSS-LKSLNL-DARQITDTGLAALTSL 274
                               T + D SL  +   SS L SLNL + ++IT   ++A+ SL
Sbjct: 710 TSGMGTLGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKIT--SISAIASL 767

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           T L  L++       SG         LR   +      D  ++H+ +  SL  LNL+   
Sbjct: 768 TALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENIRHVSECKSLNTLNLAFCK 827

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
           ++TD T   +S +T L  LN+        G+  L  L   R L+++ C
Sbjct: 828 DITDVT--ALSKITMLEELNLDCCHNIRKGIETLGTLPKARILSMKEC 873



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 167/360 (46%), Gaps = 34/360 (9%)

Query: 58  MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           +KL  L++  CN ITD+   P+S L+ L+ L +S   +T  GI  L  L +L +L+L G 
Sbjct: 248 VKLSKLSVSECNNITDA--TPISQLSALEELNLSNCHIT-KGIGTLGMLLRLRILDLSGV 304

Query: 118 PVTAACLDSLSALGSLFYLNLN-RCQLSD---------------DGCEKFSK-------I 154
           PV   CL  L   GSL  LN++ R QL+D               +GC + ++       +
Sbjct: 305 PVEDNCLKDLCDCGSLERLNISYRIQLTDINPLSNATAIEELNLNGCRRITRGIGVVWAL 364

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 213
             L+VL++    +++  L  +     L  ++LD+C G GD  L  L+ +  L+ L +   
Sbjct: 365 PKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQKC 422

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALT 272
               SG+  L  L  L  +N+    IS      +    SL  LN+++  IT  + + AL 
Sbjct: 423 ADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMES--ITGLSNVEALA 480

Query: 273 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
           ++  L  L L G    D+G   L N   L+ L++ G    +  ++ +    ++  LNLS 
Sbjct: 481 NILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSH 540

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
              +T+  +  IS L  L  LN+SN    +AG   ++ L+ L    L +  +T  DI   
Sbjct: 541 CWKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITDRDISHF 598



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 165/395 (41%), Gaps = 40/395 (10%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           N  IT + +  F+   NL+ LDL  C ++   +  L  +  LE LN+  C+ I    +  
Sbjct: 587 NTHITDRDISHFSNCKNLITLDLSFCNKLL-DVTALSNITTLEELNLDSCSNIRKG-LSV 644

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L  L  L  L I   ++ DS I  L        L+LE C      +  LS L +L  LNL
Sbjct: 645 LGELPRLCVLNIKGVQLEDSVIVSLGNGNSFVRLSLENCKGFGD-VAPLSNLVTLEELNL 703

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH------------------------ 174
           + C     G     ++  L+VL+LG  ++ D  L +                        
Sbjct: 704 HYCDKVTSGMGTLGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISA 763

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +  LT LE LN+D+C     G      L  L+   LS+T+     +RH+S   +L ++NL
Sbjct: 764 IASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENIRHVSECKSLNTLNL 823

Query: 235 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           +F   I+D  +  L+ ++ L+ LNLD       G+  L +L     L +    + D  A 
Sbjct: 824 AFCKDITD--VTALSKITMLEELNLDCCHNIRKGIETLGTLPKARILSMKECYMGDGYAQ 881

Query: 294 YLRNFKNLRS-----LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
                 N +S     LE   G ++   + ++  L  L L +  + C +        S L 
Sbjct: 882 QCSILGNSKSLVKLNLERSRGRISVKALSNVATLEELVLDHARKVCCIPS-----FSCLP 936

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
            L  LN+  + I     +++   K+LRSL L  CK
Sbjct: 937 RLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCK 971



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 169/382 (44%), Gaps = 26/382 (6%)

Query: 15   SFRRNNAITAQGMKAFAGLINLV---KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 71
            SF R +    +G    A L NLV   +L+L  C ++  G+  L  L++L  L++      
Sbjct: 674  SFVRLSLENCKGFGDVAPLSNLVTLEELNLHYCDKVTSGMGTLGRLLQLRVLDLGRTQVD 733

Query: 72   TDSDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
             +S     +  + L SL +S C K+T  S IA L  L++L   N++ C    +  +    
Sbjct: 734  DNSLENICTCSSPLVSLNLSNCKKITSISAIASLTALEEL---NIDNCCNVTSGWNVFGT 790

Query: 130  LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 188
            L  L    L+  + +D+     S+  SL  LNL F  +ITD  +  L  +T LE LNLD 
Sbjct: 791  LHQLRVATLSNTRTNDENIRHVSECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDC 848

Query: 189  CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG--SLRK 246
            C    +G+  L  L   + L + +  +G    +  S L N +S+       S G  S++ 
Sbjct: 849  CHNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKA 908

Query: 247  LAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF---KNLR 302
            L+ +++L+ L LD AR++       + S + L  L +   + TD      +N    K+LR
Sbjct: 909  LSNVATLEELVLDHARKV-----CCIPSFSCLPRLRVLNLKYTDINGDVTKNISESKSLR 963

Query: 303  SLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
            SL +     +TD  V           +N    CN   K  E +  L  L    +S+++IT
Sbjct: 964  SLNLSHCKWVTDISVLSSLLTLEELNVNC---CNGIRKGWESLGKLPLLRVAILSDTKIT 1020

Query: 362  SAGLRHLKPLKNLRSLTLESCK 383
            +  +  L   K L  L    CK
Sbjct: 1021 AKDIACLSSCKKLVKLKFFRCK 1042



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 130/445 (29%), Positives = 194/445 (43%), Gaps = 73/445 (16%)

Query: 5    LSGLSNLTSLS-FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLES 62
            +  LSN+ +L     ++A     + +F+ L  L  L+L + T I+G +  N+     L S
Sbjct: 906  VKALSNVATLEELVLDHARKVCCIPSFSCLPRLRVLNL-KYTDINGDVTKNISESKSLRS 964

Query: 63   LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
            LN+  C  +TD  +  LS L  L+ L ++C      G   L  L  L +  L    +TA 
Sbjct: 965  LNLSHCKWVTD--ISVLSSLLTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTKITAK 1022

Query: 123  CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             +  LS+   L  L   RC+   D    + KI SL+ L      I   C   LKGL  L 
Sbjct: 1023 DIACLSSCKKLVKLKFFRCKKLSDVTVVY-KIQSLEEL------IVTSCSDGLKGLNALG 1075

Query: 183  SL----------------NLDSCG-----------IGDEGLVNLTGLCNLKCLE---LSD 212
            +L                +++S G           +G+E L ++T L N+  LE   L D
Sbjct: 1076 TLPRLRFHHLRNVRGSDISVESIGTSKSLVRLHIEVGEE-LTDITPLSNITSLEELSLRD 1134

Query: 213  TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAAL 271
             +    G+  L  L  L+S++L  + ISD +L  +    S+ SLNLD + ++TD  ++ +
Sbjct: 1135 YRKPPEGVGTLGKLPRLKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTD--ISHI 1192

Query: 272  TSLTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 329
            ++LT L  L+L G     SG   L     LR  +LE       D G  +I     L  LN
Sbjct: 1193 SNLTALEELNLGGCYYITSGWKALSELPRLRVLNLEFTRVTTRDGGY-YISRCKYLVTLN 1251

Query: 330  LSQNCNLTD-------KTL---------ELISGLTGLVS------LNVSNSRITSAGLRH 367
            L + C++TD       KTL         EL  G + L +      LN+  S IT   LR 
Sbjct: 1252 L-ELCDMTDASCLANIKTLEELHIGGCDELTQGFSALFTLPQLRILNLICSLITDEDLRE 1310

Query: 368  LKPLKNLRSLTLESCKVTANDIKRL 392
            ++P   +  L L  C V  NDI  L
Sbjct: 1311 IQPPHTIEELNLSYC-VELNDITPL 1334



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 134/318 (42%), Gaps = 34/318 (10%)

Query: 69  NCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
           NC    DM  LS +  L+ L I  C+ +  SG+  L  L  L +LN++   +++     +
Sbjct: 398 NCAGFGDMTLLSSIVTLEELNIQKCADII-SGVGCLGTLPYLRVLNIKEAHISSLDFTGI 456

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
            A  SL  LN+          E  + + +++                L  +  LE L+L 
Sbjct: 457 GASKSLLQLNM----------ESITGLSNVEA---------------LANILTLEKLSLH 491

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
            C   D G+  L  L  LK L+LS T   +  LR L     + S+NLS       ++  +
Sbjct: 492 GCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCW-KMTNVSHI 550

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI- 306
           + L +L  LNL      + G  A+  L  L    L    ITD   ++  N KNL +L++ 
Sbjct: 551 SSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITDRDISHFSNCKNLITLDLS 610

Query: 307 -CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
            C   L    + +I  L  L L     +C+   K L ++  L  L  LN+   ++  + +
Sbjct: 611 FCNKLLDVTALSNITTLEELNL----DSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVI 666

Query: 366 RHLKPLKNLRSLTLESCK 383
             L    +   L+LE+CK
Sbjct: 667 VSLGNGNSFVRLSLENCK 684


>gi|157118403|ref|XP_001659098.1| F-Box protein, putative [Aedes aegypti]
 gi|108875753|gb|EAT39978.1| AAEL008262-PA, partial [Aedes aegypti]
          Length = 381

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 142/271 (52%), Gaps = 43/271 (15%)

Query: 55  KGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLT 110
           +G+ K++ L    C  ITD  +  +  + L NL++L +S C +VTDS +  + + L+ + 
Sbjct: 132 RGIKKVQILG---CYNITDISLGYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVE 188

Query: 111 LLNLEGCP--VTAACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF 164
           +L L GC      A L   +A G  +L YL L  CQ LSD+     ++ + SLK +NL F
Sbjct: 189 ILELGGCSNITNTAGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLKSINLSF 248

Query: 165 -NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
              +TD  L HL  +T LE LNL +C  I D G+  LT                      
Sbjct: 249 CVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMAYLT---------------------- 286

Query: 223 LSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTH 279
             G + + S+++SF   I+D +L  ++ GL  LKSL+L A QITD GLA +  SL  L  
Sbjct: 287 -EGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSLHDLET 345

Query: 280 LDLFG-ARITDSGAAYLRN-FKNLRSLEICG 308
           L++   AR+TD G  YL +   NLR++++ G
Sbjct: 346 LNIGQCARVTDKGLEYLADELNNLRAIDLYG 376



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 14/203 (6%)

Query: 157 LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG--IGDEGLVNLT--GLCNLKCLEL 210
           L+ L+L    ++TD  L  + + L N+E L L  C       GL   T  G   L+ L L
Sbjct: 161 LRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCSNITNTAGLSKETADGTPALEYLGL 220

Query: 211 SDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDT 266
            D Q +    LRH++ GLT+L+SINLSF   ++D  L+ LA ++ L+ LNL A   I+D 
Sbjct: 221 QDCQRLSDEALRHIAQGLTSLKSINLSFCVSVTDSGLKHLAKMTKLEELNLRACDNISDI 280

Query: 267 GLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDL 322
           G+A LT   + +  LD+ F  +I D    ++ +   +L+SL +    +TD G+  I K L
Sbjct: 281 GMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSL 340

Query: 323 SSLTLLNLSQNCNLTDKTLELIS 345
             L  LN+ Q   +TDK LE ++
Sbjct: 341 HDLETLNIGQCARVTDKGLEYLA 363



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 17/195 (8%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKA--FAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
            L G SN+T+ +       TA G  A  + GL +  +L  E    I  GL +LK      
Sbjct: 191 ELGGCSNITNTAGLSKE--TADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLK------ 242

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGC-P 118
           S+N+ +C  +TDS +K L+ +T L+ L + +C  ++D G+AYL +G   +  L++  C  
Sbjct: 243 SINLSFCVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDK 302

Query: 119 VTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHL 175
           +    L  +S  L  L  L+L+ CQ++D+G  K +K +  L+ LN+G    +TD+ L +L
Sbjct: 303 IADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYL 362

Query: 176 KG-LTNLESLNLDSC 189
              L NL +++L  C
Sbjct: 363 ADELNNLRAIDLYGC 377



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 105/201 (52%), Gaps = 17/201 (8%)

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDA-R 261
           L C  ++D    S G    + L NL +++LS    ++D SL ++A  L +++ L L    
Sbjct: 140 LGCYNITDI---SLGYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCS 196

Query: 262 QITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDA 314
            IT+T   +  +  G   L+  G     R++D    ++ +   +L+S  L  C   +TD+
Sbjct: 197 NITNTAGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLKSINLSFCVS-VTDS 255

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPL 371
           G+KH+  ++ L  LNL    N++D  +  L  G + ++SL+VS   +I    L H+ + L
Sbjct: 256 GLKHLAKMTKLEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGL 315

Query: 372 KNLRSLTLESCKVTANDIKRL 392
            +L+SL+L +C++T   + ++
Sbjct: 316 FHLKSLSLSACQITDEGLAKI 336


>gi|290971703|ref|XP_002668623.1| predicted protein [Naegleria gruberi]
 gi|284082100|gb|EFC35879.1| predicted protein [Naegleria gruberi]
          Length = 295

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 86/159 (54%), Gaps = 2/159 (1%)

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           + +S +  L S+N+S  GI D   + ++ +  L SL++ A QI D G   L+ +  LT L
Sbjct: 126 KFISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSL 185

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
           D+    I D GA YL   K L SL I G    D G K+I ++  LT L++S    +  + 
Sbjct: 186 DISANLIGDEGAKYLSEMKQLISLNI-GKNEIDEGAKYISEMKQLTSLDISY-TQVDVEG 243

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           ++ IS +  L SLN+  +RI   G++ +  +K L+SL +
Sbjct: 244 VKFISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDI 282



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L SLN+   GIGDE    ++ +  L  L++S  Q+G  G ++LS +  L S+++S  
Sbjct: 131 MKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDISAN 190

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I D   + L+ +  L SLN+   +I D G   ++ +  LT LD+   ++   G  ++  
Sbjct: 191 LIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLTSLDISYTQVDVEGVKFISE 249

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            + L SL ICG  +   GVK I ++  L  L++S N
Sbjct: 250 MRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYN 285



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 1/168 (0%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
           S++  L  LN+  N I DE    +  +  L SL++ +  IGDEG   L+ +  L  L++S
Sbjct: 129 SEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDIS 188

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
              +G  G ++LS +  L S+N+    I +G+ + ++ +  L SL++   Q+   G+  +
Sbjct: 189 ANLIGDEGAKYLSEMKQLISLNIGKNEIDEGA-KYISEMKQLTSLDISYTQVDVEGVKFI 247

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
           + +  LT L++ G RI   G  ++   K L+SL+I    +   G K I
Sbjct: 248 SEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 88/169 (52%), Gaps = 1/169 (0%)

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           +S +  L  LN++   + D+  +  S++  L  L++  N+I DE   +L  +  L SL++
Sbjct: 128 ISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDI 187

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
            +  IGDEG   L+ +  L  L +   ++   G +++S +  L S+++S+T +    ++ 
Sbjct: 188 SANLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLTSLDISYTQVDVEGVKF 246

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
           ++ +  L SLN+   +I   G+  ++ +  L  LD+   RI   GA ++
Sbjct: 247 ISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 94/179 (52%), Gaps = 3/179 (1%)

Query: 63  LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           +N+ + + + DS  + K +S +  L SL IS + + D    ++  +++LT L++    + 
Sbjct: 110 VNVTYSDWLLDSFEEAKFISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIG 169

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
                 LS +  L  L+++   + D+G +  S++  L  LN+G NEI DE   ++  +  
Sbjct: 170 DEGAKYLSEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQ 228

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           L SL++    +  EG+  ++ +  L  L +   ++G  G++ +S +  L+S+++S+  I
Sbjct: 229 LTSLDISYTQVDVEGVKFISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRI 287


>gi|222630606|gb|EEE62738.1| hypothetical protein OsJ_17541 [Oryza sativa Japonica Group]
          Length = 973

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 153/325 (47%), Gaps = 27/325 (8%)

Query: 21  AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 79
           A+ A+ +        L  L L  C  ++   V  L G+  L+ L++  C+ I+D+ +K +
Sbjct: 624 AVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHI 683

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           + + +L+ L +S + +TD+G+  +  L  L LL+L G   T   L SL  L  L +L++ 
Sbjct: 684 ASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIW 743

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEIT-------------DECLVH------LKGLTN 180
             +++++G        SL  LN+ +  +T               C +H       + L +
Sbjct: 744 GSEITNEGASVLIAFTSLSFLNISWTRVTCLPILPTLRCLNMSNCTIHSICNGEFQVLIH 803

Query: 181 LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           LE L + +   G  DE   ++    +L  L++S     SS L  L  + NLE ++LS++ 
Sbjct: 804 LEKLIISAASFGNIDEVFSSILP-SSLTYLDMSSCS--SSNLYFLGNMRNLEHLDLSYSR 860

Query: 239 ISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLR 296
           I   ++  +A +  +LK L+L   ++T   L  L  ++  LT L L   +I DS   Y+ 
Sbjct: 861 IISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSALLYIS 920

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKD 321
              +LR L +    + D  +K+ K+
Sbjct: 921 MMPSLRILNLSRTCIKDERIKYSKE 945



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 96/176 (54%), Gaps = 8/176 (4%)

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 220
           G   +  E L +L     L  L L  C  +    +  L+G+  LK L+LS  +++  +G+
Sbjct: 621 GHIAVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGI 680

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           +H++ + +LE +++S TG++D  +  ++ L +L+ L+L   + TD  L +L  LT L HL
Sbjct: 681 KHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHL 740

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           D++G+ IT+ GA+ L  F +L  L I    +T   +     L +L  LN+S NC +
Sbjct: 741 DIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPI-----LPTLRCLNMS-NCTI 790



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 33/208 (15%)

Query: 180 NLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF- 236
           ++E ++L     +  E L  L     L+ L+L+D + V SS +  LSG+  L+ ++LS  
Sbjct: 613 SVEEIDLSGHIAVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRC 672

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
           + ISD  ++ +A + SL+ L++    +TD G+ A++SL  L  LDL G R TD     L+
Sbjct: 673 SKISDAGIKHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQ 732

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
               L  L+I G  +T+ G   +   +SL+ LN+S                         
Sbjct: 733 VLTQLEHLDIWGSEITNEGASVLIAFTSLSFLNISW------------------------ 768

Query: 357 NSRITSAGLRHLKPLKNLRSLTLESCKV 384
            +R+T      L  L  LR L + +C +
Sbjct: 769 -TRVTC-----LPILPTLRCLNMSNCTI 790


>gi|343416403|emb|CCD20380.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
          Length = 1256

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 191/388 (49%), Gaps = 16/388 (4%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           N+      +   A + +L  LDL  CT I  GL  L GL  L+ L ++  + + D+ ++ 
Sbjct: 403 NSCTRITDVSPLARMRSLEMLDLNGCTGIVRGLHELCGLTTLQELYLRQMS-VDDALLRD 461

Query: 79  LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           L+    L+ L + SC+++TD  ++ L  ++ L +L+L GC      L  L  L +L  L 
Sbjct: 462 LTCHERLRELSLNSCTRITD--VSPLARMRSLEMLDLNGCTGIVRGLHELCGLTTLQELY 519

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           L +  + D      +    L+ L+L     ITD  +  L  + +LE LNL+ C     GL
Sbjct: 520 LRQMSVDDALLRDLTCHERLRELSLNSCTRITD--VSPLARMRSLEILNLNDCTGIVRGL 577

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKS 255
             L GL  L+ L L++  V  + LR L+    L  ++L S T I+D S   LA + SL++
Sbjct: 578 HVLCGLTTLQKLCLANVNVDDAFLRDLTCHERLRELSLNSCTRITDVS--PLARMRSLEN 635

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI-CGGGLTDA 314
           L+L+       GL  L  LT L  L L    + D+    L   + LR L +     +TD 
Sbjct: 636 LDLNDCTGIVRGLHVLCGLTTLQELCLRQLSVDDAFLRDLTCHERLRRLSLNSCTRITD- 694

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
            V  +  + SL +L+L+  C    + L ++ GLT L  L ++N  +  A +R L   + L
Sbjct: 695 -VSPLARMRSLEILDLN-GCTGIVRGLHVLCGLTTLQELCLANVNVDDAFVRDLTCHERL 752

Query: 375 RSLTLESC-KVT-ANDIKRLQSRDLPNL 400
           R L+L SC ++T  + + R++S ++ NL
Sbjct: 753 RRLSLNSCTRITDVSPLARMRSLEMLNL 780



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 185/388 (47%), Gaps = 16/388 (4%)

Query: 19   NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
            N+      +   A + +L  L+L  CT I  GL  L GL  L+ L ++  + + D+ ++ 
Sbjct: 829  NSCTRITDVSPLARMRSLEMLNLNGCTGIVRGLHELCGLTTLQELYLRQMS-VDDAFLRD 887

Query: 79   LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
            L+    L+ L + SC+++TD  ++ L  ++ L +L+L  C      L  L  L +L  L 
Sbjct: 888  LTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLDLNDCTGIVRGLHELCGLTTLQELC 945

Query: 138  LNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
            L    + D      +    L+ L+L     ITD  +  L  + +LE L+L+ C     GL
Sbjct: 946  LANVNVDDAFLRDLTCHERLRELSLNSCTRITD--VSPLARMRSLEKLDLNGCTGIVRGL 1003

Query: 197  VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKS 255
              L GL  L+ L L    V  + LR L+    L  ++L S T I+D S   LA + SL++
Sbjct: 1004 HVLCGLTTLQELYLRQMSVDDALLRDLTCHERLRRLSLNSCTRITDVS--PLARMRSLEN 1061

Query: 256  LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI-CGGGLTDA 314
            ++L+       GL  L  LT L  L L    + D+    L   + LR L +     +TD 
Sbjct: 1062 MDLNGCTGIVRGLHVLCGLTTLQELYLRQMSVDDAFLRDLTCHERLRKLSLNSCTRITD- 1120

Query: 315  GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
             V  +  + SL +L+L+  C    + L ++ GLT L  L +    +  A LR L   + L
Sbjct: 1121 -VSPLARMRSLEMLDLN-GCTGIVRGLHVLCGLTTLQELYLRQMCVDDAFLRDLTCHERL 1178

Query: 375  RSLTLESC-KVT-ANDIKRLQSRDLPNL 400
            R L+L SC ++T  + + R++S ++ +L
Sbjct: 1179 RRLSLNSCTRITDVSPLARMRSLEMLDL 1206



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 175/392 (44%), Gaps = 33/392 (8%)

Query: 35   NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 94
             L +L L  CTRI   +  L  +  LE LN+  C  I    +  L GLT L+ L +    
Sbjct: 751  RLRRLSLNSCTRI-TDVSPLARMRSLEMLNLNDCTGIVRG-LHELCGLTTLQELYLPKVY 808

Query: 95   VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 154
            V D+ +  L   ++L  L+L  C      +  L+ + SL  LNLN C     G  +   +
Sbjct: 809  VDDAFLRDLTCHERLRRLSLNSCTRITD-VSPLARMRSLEMLNLNGCTGIVRGLHELCGL 867

Query: 155  GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT 213
             +L+ L L    + D  L  L     L  L+L+SC  I D  +  L  + +L+ L+L+D 
Sbjct: 868  TTLQELYLRQMSVDDAFLRDLTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLDLNDC 925

Query: 214  QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT 272
                 GL  L GLT L+ + L+   + D  LR L     L+ L+L++  +ITD  ++ L 
Sbjct: 926  TGIVRGLHELCGLTTLQELCLANVNVDDAFLRDLTCHERLRELSLNSCTRITD--VSPLA 983

Query: 273  SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK--------------- 317
             +  L  LDL G      G   L     L+ L +    + DA ++               
Sbjct: 984  RMRSLEKLDLNGCTGIVRGLHVLCGLTTLQELYLRQMSVDDALLRDLTCHERLRRLSLNS 1043

Query: 318  --HIKDLSSLTLLNLSQNCNLTDKT-----LELISGLTGLVSLNVSNSRITSAGLRHLKP 370
               I D+S L  +   +N +L   T     L ++ GLT L  L +    +  A LR L  
Sbjct: 1044 CTRITDVSPLARMRSLENMDLNGCTGIVRGLHVLCGLTTLQELYLRQMSVDDAFLRDLTC 1103

Query: 371  LKNLRSLTLESC-KVT-ANDIKRLQSRDLPNL 400
             + LR L+L SC ++T  + + R++S ++ +L
Sbjct: 1104 HERLRKLSLNSCTRITDVSPLARMRSLEMLDL 1135



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 186/425 (43%), Gaps = 36/425 (8%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
             L GL+ L  L  R+ +   A  ++       L +L L  CTRI   +  L  +  LE 
Sbjct: 436 HELCGLTTLQELYLRQMSVDDAL-LRDLTCHERLRELSLNSCTRI-TDVSPLARMRSLEM 493

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++  C  I    +  L GLT L+ L +    V D+ +  L   ++L  L+L  C     
Sbjct: 494 LDLNGCTGIVRG-LHELCGLTTLQELYLRQMSVDDALLRDLTCHERLRELSLNSCTRITD 552

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            +  L+ + SL  LNLN C     G      + +L+ L L    + D  L  L     L 
Sbjct: 553 -VSPLARMRSLEILNLNDCTGIVRGLHVLCGLTTLQKLCLANVNVDDAFLRDLTCHERLR 611

Query: 183 SLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            L+L+SC  I D  +  L  + +L+ L+L+D      GL  L GLT L+ + L    + D
Sbjct: 612 ELSLNSCTRITD--VSPLARMRSLENLDLNDCTGIVRGLHVLCGLTTLQELCLRQLSVDD 669

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDT----------------------GLAALTSLTGLT 278
             LR L     L+ L+L++  +ITD                       GL  L  LT L 
Sbjct: 670 AFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEILDLNGCTGIVRGLHVLCGLTTLQ 729

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
            L L    + D+    L   + LR L +     +TD  V  +  + SL +LNL+ +C   
Sbjct: 730 ELCLANVNVDDAFVRDLTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLNLN-DCTGI 786

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT-ANDIKRLQSR 395
            + L  + GLT L  L +    +  A LR L   + LR L+L SC ++T  + + R++S 
Sbjct: 787 VRGLHELCGLTTLQELYLPKVYVDDAFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSL 846

Query: 396 DLPNL 400
           ++ NL
Sbjct: 847 EMLNL 851



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 138/292 (47%), Gaps = 12/292 (4%)

Query: 19   NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
            N+      +   A + +L KLDL  CT I  GL  L GL  L+ L ++  + + D+ ++ 
Sbjct: 971  NSCTRITDVSPLARMRSLEKLDLNGCTGIVRGLHVLCGLTTLQELYLRQMS-VDDALLRD 1029

Query: 79   LSGLTNLKSLQI-SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
            L+    L+ L + SC+++TD S +A ++ L+    ++L GC      L  L  L +L  L
Sbjct: 1030 LTCHERLRRLSLNSCTRITDVSPLARMRSLEN---MDLNGCTGIVRGLHVLCGLTTLQEL 1086

Query: 137  NLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
             L +  + D      +    L+ L+L     ITD  +  L  + +LE L+L+ C     G
Sbjct: 1087 YLRQMSVDDAFLRDLTCHERLRKLSLNSCTRITD--VSPLARMRSLEMLDLNGCTGIVRG 1144

Query: 196  LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 254
            L  L GL  L+ L L    V  + LR L+    L  ++L S T I+D S   LA + SL+
Sbjct: 1145 LHVLCGLTTLQELYLRQMCVDDAFLRDLTCHERLRRLSLNSCTRITDVS--PLARMRSLE 1202

Query: 255  SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
             L+L+       GL  L  LT L  L L+   + D+    L   + LR + +
Sbjct: 1203 MLDLNGCTGIVRGLHVLCGLTTLQELYLWQMCVDDALLRDLTCHERLRKMRL 1254



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 180/420 (42%), Gaps = 64/420 (15%)

Query: 35  NLVKLDLERCT---RIH---GGL----------------VNLKGLMKLESLNIKWCNCIT 72
           +L+KL +E+C+   R+H   GGL                V++ GL KL  ++IK  N + 
Sbjct: 227 SLIKLSVEQCSGKIRLHSAAGGLLLLEEVHLGGFNSIENVDIYGLPKLNKISIKGMNEVK 286

Query: 73  D---------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL--------- 114
           +           ++ +  +T LKS++I+  K     I   K  QK T+ N          
Sbjct: 287 EIRITGCEHLQSIEGVENITQLKSIKINKQKTEQDAI-LTKQKQKNTITNKHTKQDRKQQ 345

Query: 115 -----------EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL- 162
                      + C +    L  L  L +L  L L    + D      +    L+ L+L 
Sbjct: 346 AQQKINNAGKNQKCVIHG--LHELCGLTTLQELCLAEVSVDDAFLRDLTCHERLRELSLN 403

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
               ITD  +  L  + +LE L+L+ C     GL  L GL  L+ L L    V  + LR 
Sbjct: 404 SCTRITD--VSPLARMRSLEMLDLNGCTGIVRGLHELCGLTTLQELYLRQMSVDDALLRD 461

Query: 223 LSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
           L+    L  ++L S T I+D S   LA + SL+ L+L+       GL  L  LT L  L 
Sbjct: 462 LTCHERLRELSLNSCTRITDVS--PLARMRSLEMLDLNGCTGIVRGLHELCGLTTLQELY 519

Query: 282 LFGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
           L    + D+    L   + LR L +     +TD  V  +  + SL +LNL+ +C    + 
Sbjct: 520 LRQMSVDDALLRDLTCHERLRELSLNSCTRITD--VSPLARMRSLEILNLN-DCTGIVRG 576

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           L ++ GLT L  L ++N  +  A LR L   + LR L+L SC    +     + R L NL
Sbjct: 577 LHVLCGLTTLQKLCLANVNVDDAFLRDLTCHERLRELSLNSCTRITDVSPLARMRSLENL 636


>gi|290997880|ref|XP_002681509.1| predicted protein [Naegleria gruberi]
 gi|284095133|gb|EFC48765.1| predicted protein [Naegleria gruberi]
          Length = 226

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 5/215 (2%)

Query: 119 VTAACLDS-----LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           V+   LDS     +S +  L  L +   ++ D+G +  S++  L  L +  N+I  + + 
Sbjct: 9   VSENLLDSDNVKFISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGAKGVK 68

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
           +L  L  L +L+++   IGDEG   ++ +  L  L + D Q+G  G++++S +  L  + 
Sbjct: 69  YLCKLKQLIALDINRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTCLY 128

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           +   GI D   + ++G+  L  L++   +I D G   ++ +  LT L +F  RI D GA 
Sbjct: 129 IYGNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYNRIGDEGAK 188

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
           Y+   K L  L+I    + D G K I  +  L  L
Sbjct: 189 YISEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRL 223



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 112/222 (50%), Gaps = 1/222 (0%)

Query: 63  LNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +N+     + DSD +K +S +  L +L +  +++ D G   +  +++L  L +    + A
Sbjct: 5   VNVNVSENLLDSDNVKFISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGA 64

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             +  L  L  L  L++NR ++ D+G +  SK+  L +L++G N+I  + + ++  +  L
Sbjct: 65  KGVKYLCKLKQLIALDINRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQL 124

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L +   GIGDEG   ++G+  L  L +   ++G  G + +S +  L  +++ +  I D
Sbjct: 125 TCLYIYGNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYNRIGD 184

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
              + ++ +  L  L++   +I D G   ++ +  L  L L+
Sbjct: 185 EGAKYISEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRLCLY 226



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 1/186 (0%)

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           ++ +  L  L +   ++G  G + +S +  L S+ +S   I    ++ L  L  L +L++
Sbjct: 22  ISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGAKGVKYLCKLKQLIALDI 81

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
           +  +I D G   ++ +  LT L +   +I   G  Y+   K L  L I G G+ D G K 
Sbjct: 82  NRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTCLYIYGNGIGDEGAKL 141

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           I  +  LT L++  N  + D+  + IS +  L  L++  +RI   G +++  +K L  L 
Sbjct: 142 ISGMKQLTELSIGHN-EIGDEGAKFISEMKQLTELSIFYNRIGDEGAKYISEMKQLTDLD 200

Query: 379 LESCKV 384
           +   ++
Sbjct: 201 IRHNRI 206



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 26/207 (12%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           T+ +S +  L SL   +N  I A+G+K    L  L+ LD+ R                  
Sbjct: 43  TKLISEMKQLISLGISKNQ-IGAKGVKYLCKLKQLIALDINR------------------ 83

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
                  N I D   K +S +  L  L +  +++   G+ Y+  +++LT L + G  +  
Sbjct: 84  -------NRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTCLYIYGNGIGD 136

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
                +S +  L  L++   ++ D+G +  S++  L  L++ +N I DE   ++  +  L
Sbjct: 137 EGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYNRIGDEGAKYISEMKQL 196

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCL 208
             L++    IGD+G   ++G+  LK L
Sbjct: 197 TDLDIRHNRIGDKGEKLISGMKKLKRL 223


>gi|320168558|gb|EFW45457.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 828

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 127/273 (46%), Gaps = 7/273 (2%)

Query: 19  NNAITAQGMKAFAGLINLVKLDL--ERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSD 75
           NN IT+    AF GL  L +L L   + + I      +L  L+ L      + N IT  +
Sbjct: 118 NNQITSISANAFVGLTALTQLLLYNNQISSIPASAWADLNTLINLS----LYQNRITSIN 173

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
              L+ LT LK+L +  +++T        GL  LT L ++  P+T+    + ++L +L  
Sbjct: 174 DASLTSLTALKTLILDNNQITSVPANAFAGLTSLTYLTVQSNPITSISAGAFASLSALTC 233

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L L+  QL     + F+ + +L +LNL  N++T        GL  L  L L    I    
Sbjct: 234 LYLSSNQLVSIPADAFTDLTALTLLNLRDNQLTSISANAFTGLVALTQLQLPGNQITSIA 293

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
               TGL  L  L+L+  Q  S     L+GL  L ++ L    I+       AG+++L++
Sbjct: 294 ADAFTGLNALSFLDLTSNQFSSIPSSALTGLPALSTLILYTNSITSIPANAFAGMTALQA 353

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           + L   QIT    +A T LT +T+L L G  +T
Sbjct: 354 VVLSTNQITSIAASAFTGLTAVTYLVLDGNPVT 386



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 100/235 (42%), Gaps = 7/235 (2%)

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNLK 206
            F+ + +L  L+L  N++T     +   LT L+ L LD+     I     V LT L  L 
Sbjct: 80  AFTGLTALTTLHLYANQLTSIPAYNFTVLTALKDLRLDNNQITSISANAFVGLTALTQLL 139

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
                 + + +S    L+ L NL       T I+D SL  L   ++LK+L LD  QIT  
Sbjct: 140 LYNNQISSIPASAWADLNTLINLSLYQNRITSINDASLTSL---TALKTLILDNNQITSV 196

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
              A   LT LT+L +    IT   A    +   L  L +    L         DL++LT
Sbjct: 197 PANAFAGLTSLTYLTVQSNPITSISAGAFASLSALTCLYLSSNQLVSIPADAFTDLTALT 256

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           LLNL  N  LT  +    +GL  L  L +  ++ITS        L  L  L L S
Sbjct: 257 LLNLRDN-QLTSISANAFTGLVALTQLQLPGNQITSIAADAFTGLNALSFLDLTS 310



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 132/309 (42%), Gaps = 2/309 (0%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113
             GL  L +L++ + N +T       + LT LK L++  +++T        GL  LT L 
Sbjct: 81  FTGLTALTTLHL-YANQLTSIPAYNFTVLTALKDLRLDNNQITSISANAFVGLTALTQLL 139

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           L    +++    + + L +L  L+L + +++       + + +LK L L  N+IT     
Sbjct: 140 LYNNQISSIPASAWADLNTLINLSLYQNRITSINDASLTSLTALKTLILDNNQITSVPAN 199

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
              GLT+L  L + S  I          L  L CL LS  Q+ S      + LT L  +N
Sbjct: 200 AFAGLTSLTYLTVQSNPITSISAGAFASLSALTCLYLSSNQLVSIPADAFTDLTALTLLN 259

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L    ++  S     GL +L  L L   QIT     A T L  L+ LDL   + +   ++
Sbjct: 260 LRDNQLTSISANAFTGLVALTQLQLPGNQITSIAADAFTGLNALSFLDLTSNQFSSIPSS 319

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            L     L +L +    +T         +++L  + LS N  +T       +GLT +  L
Sbjct: 320 ALTGLPALSTLILYTNSITSIPANAFAGMTALQAVVLSTN-QITSIAASAFTGLTAVTYL 378

Query: 354 NVSNSRITS 362
            +  + +T+
Sbjct: 379 VLDGNPVTT 387



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 86/212 (40%), Gaps = 5/212 (2%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 76
           NN IT+    AFAGL +L  L ++    T I  G      L  L  L +   N +     
Sbjct: 190 NNQITSVPANAFAGLTSLTYLTVQSNPITSISAGA--FASLSALTCLYLS-SNQLVSIPA 246

Query: 77  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
              + LT L  L +  +++T        GL  LT L L G  +T+   D+ + L +L +L
Sbjct: 247 DAFTDLTALTLLNLRDNQLTSISANAFTGLVALTQLQLPGNQITSIAADAFTGLNALSFL 306

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           +L   Q S       + + +L  L L  N IT        G+T L+++ L +  I     
Sbjct: 307 DLTSNQFSSIPSSALTGLPALSTLILYTNSITSIPANAFAGMTALQAVVLSTNQITSIAA 366

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
              TGL  +  L L    V +       GL N
Sbjct: 367 SAFTGLTAVTYLVLDGNPVTTLPPGLFQGLPN 398



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            +GL  LT L    N  IT+    AF GL  L  LDL            L GL  L +L 
Sbjct: 273 FTGLVALTQLQLPGNQ-ITSIAADAFTGLNALSFLDLTSNQFSSIPSSALTGLPALSTL- 330

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I + N IT       +G+T L+++ +S +++T    +   GL  +T L L+G PVT    
Sbjct: 331 ILYTNSITSIPANAFAGMTALQAVVLSTNQITSIAASAFTGLTAVTYLVLDGNPVTTLPP 390

Query: 125 DSLSALGSLFYLNLNRCQLSDD 146
                L +  YL++++  +S +
Sbjct: 391 GLFQGLPNGLYLSVSQQYMSPN 412


>gi|386333502|ref|YP_006029672.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
 gi|334195951|gb|AEG69136.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
          Length = 535

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 136/291 (46%), Gaps = 1/291 (0%)

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           +L  S + V   G+  L   + LT L+L    +  A    L A   L  LN+NR ++   
Sbjct: 218 TLNASRNGVGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTMLNVNRNRIDVP 277

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           G    +   +L  L++G N I D  +  L   T L +LN++  G+G  G+  L     L 
Sbjct: 278 GARALAACKTLTSLDIGGNSIGDAGVEALLAHTQLTTLNVERAGVGAHGVRALADCKTLT 337

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            L + +  +G  G + L+  T+L +++    GI     + LA  + L +LNL    + D 
Sbjct: 338 SLRIDNNNIGDEGAKTLAASTSLTALHSESNGIGLAGAKALAANTMLTTLNLGHNSVGDA 397

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
           G  A  + T L  L +    ++D+GA  L   K L +L++    + D G +      +LT
Sbjct: 398 GAQAWLANTKLVSLSVRRNGLSDAGAIRLAASKTLTTLDVGDNAIKDTGARAFAANRTLT 457

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
            LNLS N  + +     ++  T L SL++ N+R+  AG+R L   + L SL
Sbjct: 458 TLNLSSN-EIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSL 507



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 180/432 (41%), Gaps = 61/432 (14%)

Query: 17  RRNNAITAQGMKAFAGLINL-VKLDLERCTRIH-GGLVNLKGLMKLESLN-IKWCNCITD 73
           RR+  +T Q ++A +  +   V+ D+ +    +  GL   K      +L  +      TD
Sbjct: 72  RRSPPVTVQRLRAVSRSVKATVEADIRQLVVTNRAGLAGAKRAGNYPALEKLTLAGPFTD 131

Query: 74  SDMKPLSGLTNLKSLQISCSK----VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
           +D+  L     LK L +S  +    +T +GIA+L  L  L  LNL G  +       L+ 
Sbjct: 132 ADLAGLP--PTLKELDLSRDRGRGFITAAGIAHLSRL-PLVRLNLSGNRIGTVEARLLAN 188

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
             +L  L+++RC +  +     +    L  LN   N +  E +  L     L SL+L   
Sbjct: 189 HPTLTELDVSRCGIGPEEARALAASARLTTLNASRNGVGGEGVRALVDCKTLTSLDLSEN 248

Query: 190 GIGD------------------------EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           G+GD                         G   L     L  L++    +G +G+  L  
Sbjct: 249 GLGDAEAQRLGASERLTMLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDAGVEALLA 308

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG---LAALTSLTGL----- 277
            T L ++N+   G+    +R LA   +L SL +D   I D G   LAA TSLT L     
Sbjct: 309 HTQLTTLNVERAGVGAHGVRALADCKTLTSLRIDNNNIGDEGAKTLAASTSLTALHSESN 368

Query: 278 ----------------THLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIK 320
                           T L+L    + D+GA A+L N K L SL +   GL+DAG   + 
Sbjct: 369 GIGLAGAKALAANTMLTTLNLGHNSVGDAGAQAWLANTK-LVSLSVRRNGLSDAGAIRLA 427

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
              +LT L++  N  + D      +    L +LN+S++ I +AG R L     L SL L 
Sbjct: 428 ASKTLTTLDVGDNA-IKDTGARAFAANRTLTTLNLSSNEIGNAGARALAANTRLASLDLR 486

Query: 381 SCKVTANDIKRL 392
           + ++    ++ L
Sbjct: 487 NNRMLEAGVRAL 498



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 124/266 (46%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N + D++ + L     L  L ++ +++   G   L   + LT L++ G  +  A +++L 
Sbjct: 248 NGLGDAEAQRLGASERLTMLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDAGVEALL 307

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
           A   L  LN+ R  +   G    +   +L  L +  N I DE    L   T+L +L+ +S
Sbjct: 308 AHTQLTTLNVERAGVGAHGVRALADCKTLTSLRIDNNNIGDEGAKTLAASTSLTALHSES 367

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
            GIG  G   L     L  L L    VG +G +     T L S+++   G+SD    +LA
Sbjct: 368 NGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQAWLANTKLVSLSVRRNGLSDAGAIRLA 427

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
              +L +L++    I DTG  A  +   LT L+L    I ++GA  L     L SL++  
Sbjct: 428 ASKTLTTLDVGDNAIKDTGARAFAANRTLTTLNLSSNEIGNAGARALAANTRLASLDLRN 487

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNC 334
             + +AGV+ +    +L+ L +S NC
Sbjct: 488 NRMLEAGVRALLVNRTLSSLGVSFNC 513



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 100/232 (43%), Gaps = 2/232 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+    LTSL     N+I   G++A      L  L++ER      G+  L     L SL 
Sbjct: 282 LAACKTLTSLDIG-GNSIGDAGVEALLAHTQLTTLNVERAGVGAHGVRALADCKTLTSLR 340

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I D   K L+  T+L +L    + +  +G   L     LT LNL    V  A  
Sbjct: 341 ID-NNNIGDEGAKTLAASTSLTALHSESNGIGLAGAKALAANTMLTTLNLGHNSVGDAGA 399

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            +  A   L  L++ R  LSD G  + +   +L  L++G N I D           L +L
Sbjct: 400 QAWLANTKLVSLSVRRNGLSDAGAIRLAASKTLTTLDVGDNAIKDTGARAFAANRTLTTL 459

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
           NL S  IG+ G   L     L  L+L + ++  +G+R L     L S+ +SF
Sbjct: 460 NLSSNEIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSF 511


>gi|83747318|ref|ZP_00944359.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
 gi|207739111|ref|YP_002257504.1| type III effector protein gala2 [Ralstonia solanacearum IPO1609]
 gi|83726018|gb|EAP73155.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
 gi|206592484|emb|CAQ59390.1| type III effector protein gala2 [Ralstonia solanacearum IPO1609]
          Length = 978

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 188/402 (46%), Gaps = 15/402 (3%)

Query: 8   LSNLTSL-SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL-----MKLE 61
           L N  +L S R +  ++ + ++A    +    LDL  CT   G  V+  GL     + LE
Sbjct: 549 LQNYPALESLRFHGHLSIEDLRALPPSVR--HLDLSGCT---GSAVSEAGLAVLARLPLE 603

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           SL++     I D +++ L+  T+L SL +S +++ ++G   L     LT LN+   P+  
Sbjct: 604 SLDLSGTR-IGDREVQALASSTSLTSLNLSGNRIGNAGAQALGRNTVLTALNVSANPIGD 662

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           A + +L+   SL  L L    + + G    +    L+ L++  N+++++    L     L
Sbjct: 663 AGVQALADSRSLTSLELRGIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTL 722

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            SL  ++CG+ +     L  + +L+ LE+    +G +G+  ++   +L ++NLS   I+ 
Sbjct: 723 ASLKANACGLTNSMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITL 782

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             LR L    +L SL++      D G   L+    LT L L    I  +GA  L   + L
Sbjct: 783 QGLRPLELSRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTL 842

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
            SL++ G  +     K + +   LT LN+S +C L D+    ++    L SL+VS +R++
Sbjct: 843 ISLDLRGNTIDVDAAKALANTGCLTSLNVS-DCKLDDEAASALAESLTLTSLDVSVNRLS 901

Query: 362 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
               R L     L SL +    +  +  + L   + P+L S 
Sbjct: 902 GQAARALAGNATLTSLNISHNHIGPDGAQALA--ESPSLTSL 941



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 148/331 (44%), Gaps = 2/331 (0%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L+  ++LTSL+    N I   G +A      L  L++        G+  L     L S
Sbjct: 618 QALASSTSLTSLNLS-GNRIGNAGAQALGRNTVLTALNVSANPIGDAGVQALADSRSLTS 676

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L ++    I ++ +  L+  T L+SL IS + +++   A L   Q L  L    C +T +
Sbjct: 677 LELRGIG-IGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNS 735

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
               L+ + SL  L +    + D G    ++  SL+ LNL  N IT + L  L+    L 
Sbjct: 736 MAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLT 795

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SL++   G GD G + L+    L  L+L    +GS+G + L+    L S++L    I   
Sbjct: 796 SLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTIDVD 855

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           + + LA    L SLN+   ++ D   +AL     LT LD+   R++   A  L     L 
Sbjct: 856 AAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAGNATLT 915

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           SL I    +   G + + +  SLT L+   N
Sbjct: 916 SLNISHNHIGPDGAQALAESPSLTSLDARAN 946



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 122/288 (42%), Gaps = 2/288 (0%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 69
           +LTSL  R    I   G+ A A    L  LD+            L     L SL    C 
Sbjct: 673 SLTSLELR-GIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACG 731

Query: 70  CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
            +T+S  + L+ + +L++L++  + + D+G+  +     L  LNL   P+T   L  L  
Sbjct: 732 -LTNSMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLEL 790

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
             +L  L+++     D G    SK  +L  L LGFN I       L     L SL+L   
Sbjct: 791 SRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGN 850

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
            I  +    L     L  L +SD ++       L+    L S+++S   +S  + R LAG
Sbjct: 851 TIDVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAG 910

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            ++L SLN+    I   G  AL     LT LD     I ++GA  L N
Sbjct: 911 NATLTSLNISHNHIGPDGAQALAESPSLTSLDARANGIGEAGARALEN 958



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 14/236 (5%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           M + L+ + +L +L    +N+I   G+ A A   +L  L+L          + L+GL  L
Sbjct: 736 MAQQLARIRSLRTLEVG-SNSIGDTGVLAIARNASLRTLNLSHNP------ITLQGLRPL 788

Query: 61  E------SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           E      SL++    C  D     LS    L SL++  + +  +G   L   + L  L+L
Sbjct: 789 ELSRTLTSLDVSGIGC-GDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDL 847

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
            G  +      +L+  G L  LN++ C+L D+     ++  +L  L++  N ++ +    
Sbjct: 848 RGNTIDVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARA 907

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
           L G   L SLN+    IG +G   L    +L  L+     +G +G R L   T ++
Sbjct: 908 LAGNATLTSLNISHNHIGPDGAQALAESPSLTSLDARANGIGEAGARALENNTRMQ 963



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 84/180 (46%), Gaps = 19/180 (10%)

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
           E + +L GL  LESLN+    IGD+G   L    +L+ L  ++  +G++G R L+    L
Sbjct: 145 EAIAYLAGLP-LESLNVAGADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVL 203

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------- 282
            S++L+  GI D   R LA   SL +L +    +TD G  AL     LT LDL       
Sbjct: 204 ASLDLTRNGIGDEGARALADSRSLTNLAVLNCLVTDVGARALAGNGTLTALDLGNLITET 263

Query: 283 -----------FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
                          IT  GA  L   ++L SL I G    D GV+ +    +LT LN++
Sbjct: 264 GNELEQAGYDRTANEITARGAWALAQNRSLTSLSIQGNLCGDGGVQALAKNRTLTSLNVA 323


>gi|343415517|emb|CCD20643.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
          Length = 1289

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 186/400 (46%), Gaps = 30/400 (7%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG---LVNLKGLMK 59
           E ++    L +L   R ++IT   +   + L +LV LD+  C  I  G    + L+ L  
Sbjct: 566 EYITACQQLQALVLHRCSSIT--DISPLSDLQSLVSLDIRECMNIVEGWNCFMRLRMLKM 623

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           L  L  +    +++  ++ L+  T L+ L +  C+ +TD+ +  L  LQ L +L++  C 
Sbjct: 624 LHLLEAR----VSNDSLRSLAACTQLQVLVLHRCNNITDTSL--LGSLQYLQVLDVRECS 677

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVH 174
             +     L+ L  L  + L    ++     + +    ++VL L      ++I+   L H
Sbjct: 678 GISQGCAYLNNLPYLRAMQLRGLVMNGSFVHRLANQRHIRVLMLQPCVFISDISP--LWH 735

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L+    LE L+L  CG  + G   L GL  LK L +     G+  LR L   T+L S+ L
Sbjct: 736 LR---ELEVLSLCHCGRIERGWDALGGLEKLKDLYILKGPFGNDFLRALQRNTHLRSLAL 792

Query: 235 -SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
            S  GISD  +  L  +S L+ L++D       G   L  L GL  L L   R+  S A+
Sbjct: 793 YSCPGISD--ISSLGDVSGLEMLDIDNCAAIRDGWYGLGKLKGLEELYLRQVRLPRSLAS 850

Query: 294 YLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
            LR+ +NLR LEI  C   ++ + +  I  L  L +      CN +   L  +  L  LV
Sbjct: 851 VLRSCENLRVLEIFACNPVVSVSALGTINGLEVLVI----DKCNASATELNSLLQLKCLV 906

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +L++S + ++ + L  L+   +L+S+  + CKV    + R
Sbjct: 907 ALHLSEAILSCSFLHGLRSCVHLQSVRFDRCKVEKGAVFR 946



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 161/362 (44%), Gaps = 26/362 (7%)

Query: 33   LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-S 91
            L  L  L L  C RI  G   L GL KL+ L I       +  ++ L   T+L+SL + S
Sbjct: 736  LRELEVLSLCHCGRIERGWDALGGLEKLKDLYILK-GPFGNDFLRALQRNTHLRSLALYS 794

Query: 92   CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 151
            C  ++D  I+ L  +  L +L+++ C         L  L  L  L L + +L        
Sbjct: 795  CPGISD--ISSLGDVSGLEMLDIDNCAAIRDGWYGLGKLKGLEELYLRQVRLPRSLASVL 852

Query: 152  SKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL-- 208
                +L+VL +   N +    +  L  +  LE L +D C   +     L  L  LKCL  
Sbjct: 853  RSCENLRVLEIFACNPVVS--VSALGTINGLEVLVIDKC---NASATELNSLLQLKCLVA 907

Query: 209  -ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDT 266
              LS+  +  S L  L    +L+S+      +  G++ R   GLS L   +L  +++   
Sbjct: 908  LHLSEAILSCSFLHGLRSCVHLQSVRFDRCKVEKGAVFRSHHGLSVLDFTSLGKKRVN-- 965

Query: 267  GLAALTSLTGLTHLDLFGARITDSGAAYLRNFK---NLRSLEICGGGLTDAGVKHIKDLS 323
               AL+  + +   + F  +I     A+L   K   +LR+L +     T+  V  + D+ 
Sbjct: 966  ---ALSFFSQVKPSE-FRLQIKSLNKAFLCTLKLNTHLRTLMLYQCYFTN--VSPLGDIK 1019

Query: 324  SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
            +L +L+L   C+     L  +  L GL +L +++  +  + L  L  LK+LRSL+L  C+
Sbjct: 1020 TLEVLDLD-GCSRIRSGLTDLHKLVGLKTLRLASRGVCDSFLDGLAKLKHLRSLSLIGCR 1078

Query: 384  VT 385
            +T
Sbjct: 1079 IT 1080



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 151/353 (42%), Gaps = 25/353 (7%)

Query: 39   LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTD 97
            LD++ C  I  G   L  L  LE L ++    +  S    L    NL+ L+I +C+ V  
Sbjct: 813  LDIDNCAAIRDGWYGLGKLKGLEELYLRQVR-LPRSLASVLRSCENLRVLEIFACNPVV- 870

Query: 98   SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS- 156
              ++ L  +  L +L ++ C  +A  L+SL  L  L  L+L+   LS   C     + S 
Sbjct: 871  -SVSALGTINGLEVLVIDKCNASATELNSLLQLKCLVALHLSEAILS---CSFLHGLRSC 926

Query: 157  LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
            + + ++ F+    E     +    L  L+  S  +G + +  L+    +K  E    Q+ 
Sbjct: 927  VHLQSVRFDRCKVEKGAVFRSHHGLSVLDFTS--LGKKRVNALSFFSQVKPSEFR-LQIK 983

Query: 217  SSGLRHLSGL---TNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 270
            S     L  L   T+L ++ L    FT +S      L  + +L+ L+LD      +GL  
Sbjct: 984  SLNKAFLCTLKLNTHLRTLMLYQCYFTNVS-----PLGDIKTLEVLDLDGCSRIRSGLTD 1038

Query: 271  LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
            L  L GL  L L    + DS    L   K+LRSL + G  +TD  V  +  +  L  L+L
Sbjct: 1039 LHKLVGLKTLRLASRGVCDSFLDGLAKLKHLRSLSLIGCRITD--VSELGRIHWLEALDL 1096

Query: 331  SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
            S  C   +K  + I  +  L  L +   RI       L     LR L+L+ CK
Sbjct: 1097 SY-CTKINKGWKCIGEIKSLKELTLRGCRIYYPLFYALNGSDTLRKLSLKYCK 1148



 Score = 39.3 bits (90), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 119/275 (43%), Gaps = 38/275 (13%)

Query: 157 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQV 215
           L+ ++     + D CL  L   + L  L L+ C  I D  L +L+G   LK L L   + 
Sbjct: 336 LRAVDFSHTAVNDACLRELGMASGLSELRLEGCPCITD--LSSLSGSPVLKTLVLGGDKN 393

Query: 216 GSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAGL----SSLKSLNLDARQITDTGLAA 270
              G+  ++ + ++LESI++ ++  ++   R+++      SS +    + R IT  G   
Sbjct: 394 SVGGVCGVTQMYSSLESIDVRYSRDAERFTRRISDRYGERSSYRCGCKNIRNITPLG--- 450

Query: 271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             S+  L  LDL G      G   L     LR L + G G+ +  ++ +     L +L L
Sbjct: 451 --SIGRLEVLDLCGCTNIAHGWQRLPQLNYLRELRVGGAGINNKFIQMLGAHGRLRVLVL 508

Query: 331 SQNCNLTD-------KTLELI------------SGLTGLVSLNVSNSRITSAG---LRHL 368
               N+TD       + LE++            S L  L  L   + R +SAG   L ++
Sbjct: 509 EYCNNITDISPLGYIRGLEVLGICECTSVKGGWSCLARLCMLKQFHLRDSSAGDDALEYI 568

Query: 369 KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
              + L++L L  C  +  DI  L   DL +LVS 
Sbjct: 569 TACQQLQALVLHRCS-SITDISPLS--DLQSLVSL 600


>gi|290989491|ref|XP_002677371.1| Hypothetical protein NAEGRDRAFT_67509 [Naegleria gruberi]
 gi|284090978|gb|EFC44627.1| Hypothetical protein NAEGRDRAFT_67509 [Naegleria gruberi]
          Length = 350

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 140/314 (44%), Gaps = 22/314 (7%)

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N + ++ +K  SG  NL  L +  + +      +L  L +LT LN++   +    +DS+
Sbjct: 56  INILLETLLKSFSG-RNLTKLDLRRNFIHAKLAEHLGNLHQLTDLNVDDSFIVEPAIDSI 114

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
             L  L  L++N   L     +   ++  L VL++  N +       L+ L+NL  LN+ 
Sbjct: 115 RYLTKLSTLSINSNNLKTKELKIIKEMKQLTVLSIAKNSMQSGGAKLLRNLSNLTILNIS 174

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
           +  IG+EG   L  +  L  L +S T + S G+ +L+   NL  +N  F+G  + SLR  
Sbjct: 175 NNRIGNEGWKYLCSMKQLTKLNISGTNISSEGISYLTNFPNLTELN--FSG--NTSLR-- 228

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
                         Q     L+ L  LT L    +    I D    Y+   + L SL + 
Sbjct: 229 ------------FSQKVQEQLSELKYLTKLVINYIHPIPIDD--LQYIHKLEKLTSLSLK 274

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
              + DA   HI     LT L+++ N NL+D   E  S L  L  LN+S + ++  G+  
Sbjct: 275 SNFMYDASAIHISKCEKLTYLDVAIN-NLSDAAAEAFSHLPNLKYLNISENYLSKKGVEL 333

Query: 368 LKPLKNLRSLTLES 381
           L+ +  L SL  ES
Sbjct: 334 LRNMPQLTSLIYES 347



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 4/187 (2%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L  LSNLT L+   NN I  +G K    +  L KL++        G+  L     L  LN
Sbjct: 162 LRNLSNLTILNIS-NNRIGNEGWKYLCSMKQLTKLNISGTNISSEGISYLTNFPNLTELN 220

Query: 65  IKWCNCITDSD--MKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
                 +  S    + LS L  L  L I+    +    + Y+  L+KLT L+L+   +  
Sbjct: 221 FSGNTSLRFSQKVQEQLSELKYLTKLVINYIHPIPIDDLQYIHKLEKLTSLSLKSNFMYD 280

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           A    +S    L YL++    LSD   E FS + +LK LN+  N ++ + +  L+ +  L
Sbjct: 281 ASAIHISKCEKLTYLDVAINNLSDAAAEAFSHLPNLKYLNISENYLSKKGVELLRNMPQL 340

Query: 182 ESLNLDS 188
            SL  +S
Sbjct: 341 TSLIYES 347



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 4/141 (2%)

Query: 261 RQITDTGLAA-LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
           R      LA  L +L  LT L++  + I +     +R    L +L I    L    +K I
Sbjct: 79  RNFIHAKLAEHLGNLHQLTDLNVDDSFIVEPAIDSIRYLTKLSTLSINSNNLKTKELKII 138

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           K++  LT+L++++N  +     +L+  L+ L  LN+SN+RI + G ++L  +K L  L +
Sbjct: 139 KEMKQLTVLSIAKNS-MQSGGAKLLRNLSNLTILNISNNRIGNEGWKYLCSMKQLTKLNI 197

Query: 380 ESCKVTANDIKRLQSRDLPNL 400
               +++  I  L   + PNL
Sbjct: 198 SGTNISSEGISYLT--NFPNL 216


>gi|290980538|ref|XP_002672989.1| predicted protein [Naegleria gruberi]
 gi|284086569|gb|EFC40245.1| predicted protein [Naegleria gruberi]
          Length = 315

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 6/202 (2%)

Query: 117 CPVTAACLDS------LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
              ++  LDS      +S +  L  LN+   ++ D G +  +++  L  LN+G N I  +
Sbjct: 109 VKFSSWLLDSFERAEFISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIK 168

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
               +  +  L SL+  +  IGDEG   ++ +  L  L++   Q+G  G + +SG+  L 
Sbjct: 169 GAKLISEMKQLTSLHTYNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLT 228

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           S+++    I D   + ++G+  L SLN+   +I D G   ++ +  LT L ++  RI D 
Sbjct: 229 SLHIYNNRIGDEGAKLISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRIGDE 288

Query: 291 GAAYLRNFKNLRSLEICGGGLT 312
           GA Y+   K L SL I G  L 
Sbjct: 289 GAKYISEMKQLTSLNIGGNELV 310



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 1/181 (0%)

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           ++ +  L  L + + ++G  G ++++ +  L S+N+    I     + ++ +  L SL+ 
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
              +I D G   ++ +  LT LD+ G +I D GA  +   K L SL I    + D G K 
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRIGDEGAKL 244

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           I  +  LT LN+  N  + D+  +LISG+  L SL + N+RI   G +++  +K L SL 
Sbjct: 245 ISGMKQLTSLNIGVN-EIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMKQLTSLN 303

Query: 379 L 379
           +
Sbjct: 304 I 304



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 63  LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           +N+K+ + + DS  +   +S +  L SL I  +++ D G  Y+  +++LT LN+ G  + 
Sbjct: 107 VNVKFSSWLLDSFERAEFISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIG 166

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
                 +S +  L  L+    ++ D+G +  S++  L  L++G N+I DE    + G+  
Sbjct: 167 IKGAKLISEMKQLTSLHTYNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKR 226

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L SL++ +  IGDEG   ++G+  L  L +   ++G  G + +SG+  L S+ +    I 
Sbjct: 227 LTSLHIYNNRIGDEGAKLISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRIG 286

Query: 241 DGSLRKLAGLSSLKSLNLDARQIT 264
           D   + ++ +  L SLN+   ++ 
Sbjct: 287 DEGAKYISEMKQLTSLNIGGNELV 310



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 94/190 (49%)

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
           S +  E  S++  L  LN+  N I D    ++  +  L SLN+    IG +G   ++ + 
Sbjct: 118 SFERAEFISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMK 177

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
            L  L   + ++G  G +++S +  L S+++    I D   + ++G+  L SL++   +I
Sbjct: 178 QLTSLHTYNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRI 237

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
            D G   ++ +  LT L++    I D GA  +   K L SL+I    + D G K+I ++ 
Sbjct: 238 GDEGAKLISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMK 297

Query: 324 SLTLLNLSQN 333
            LT LN+  N
Sbjct: 298 QLTSLNIGGN 307



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 1/162 (0%)

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           +S +  L S+N+    I D   + +  +  L SLN+   +I   G   ++ +  LT L  
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
           +  RI D GA Y+   K L SL+I G  + D G K I  +  LT L++  N  + D+  +
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNN-RIGDEGAK 243

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           LISG+  L SLN+  + I   G + +  +K L SL + + ++
Sbjct: 244 LISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRI 285


>gi|326487896|dbj|BAJ89787.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 661

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 128/422 (30%), Positives = 192/422 (45%), Gaps = 64/422 (15%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNI 65
           G   L +LSF+    I+  G+        +L  LD+      +  L ++  L KLE L +
Sbjct: 179 GCPRLETLSFKWCREISDIGVDLLVKKCRDLRSLDISYLKVSNESLRSISTLEKLEELAM 238

Query: 66  KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAA 122
             C+CI D  ++ LS G  +L+S+ +S C+ VT  G+A L  G   L  LN       AA
Sbjct: 239 VACSCIDDEGLELLSRGSNSLQSVDVSRCNHVTSQGLASLIDGHSFLQKLN-------AA 291

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNL 181
             DSL  +G  F   L             +   +L VL L   E++   L  + +G TNL
Sbjct: 292 --DSLHEIGQNFLSKL------------VTLKATLTVLRLDGFEVSSSLLSAIGEGCTNL 337

Query: 182 ESLNLDSC-GIGDEGLVNLTGLCN---------------------------LKCLEL-SD 212
             + L  C G+ DEG+ +L   C+                           L+CL L S 
Sbjct: 338 VEIGLSKCNGVTDEGISSLVARCSYLRKIDLTCCNLVTNDSLDSIADNCKMLECLRLESC 397

Query: 213 TQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAA 270
           + +   GL  + S   NL+ I+L+  G++D +L  LA  S L  L L  +  I+D GL  
Sbjct: 398 SSINEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLILKLGLSSSISDKGLGF 457

Query: 271 LTSLTG-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLT 326
           ++S  G L  LDL+  + ITD G A L N  K ++ L +C    +TD+G+ H+  L  LT
Sbjct: 458 ISSKCGKLIELDLYRCSSITDDGLAALANGCKKIKLLNLCYCNKITDSGLSHLGALEELT 517

Query: 327 LLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCK 383
            L L     +T   +  ++ G   LV L++     +  +GL  L     NLR LT+  C+
Sbjct: 518 NLELRCLVRITGIGISSVVIGCKSLVELDLKRCYSVNDSGLWALARYALNLRQLTISYCQ 577

Query: 384 VT 385
           VT
Sbjct: 578 VT 579



 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 5/120 (4%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRI-HGGLVNLK-GLMK 59
            +L+  S L  L    +++I+ +G+   +     L++LDL RC+ I   GL  L  G  K
Sbjct: 431 HHLAKCSELLILKLGLSSSISDKGLGFISSKCGKLIELDLYRCSSITDDGLAALANGCKK 490

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGI-AYLKGLQKLTLLNLEGC 117
           ++ LN+ +CN ITDS +  L  L  L +L++ C  ++T  GI + + G + L  L+L+ C
Sbjct: 491 IKLLNLCYCNKITDSGLSHLGALEELTNLELRCLVRITGIGISSVVIGCKSLVELDLKRC 550


>gi|326505700|dbj|BAJ95521.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 661

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 128/422 (30%), Positives = 192/422 (45%), Gaps = 64/422 (15%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNI 65
           G   L +LSF+    I+  G+        +L  LD+      +  L ++  L KLE L +
Sbjct: 179 GCPRLETLSFKWCREISDIGVDLLVKKCRDLRSLDISYLKVSNESLRSISTLEKLEELAM 238

Query: 66  KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAA 122
             C+CI D  ++ LS G  +L+S+ +S C+ VT  G+A L  G   L  LN       AA
Sbjct: 239 VACSCIDDEGLELLSRGSNSLQSVDVSRCNHVTSQGLASLIDGHSFLQKLN-------AA 291

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNL 181
             DSL  +G  F   L             +   +L VL L   E++   L  + +G TNL
Sbjct: 292 --DSLHEIGQNFLSKL------------VTLKATLTVLRLDGFEVSSSLLSAIGEGCTNL 337

Query: 182 ESLNLDSC-GIGDEGLVNLTGLCN---------------------------LKCLEL-SD 212
             + L  C G+ DEG+ +L   C+                           L+CL L S 
Sbjct: 338 VEIGLSKCNGVTDEGISSLVARCSYLRKIDLTCCNLVTNDSLDSIADNCKMLECLRLESC 397

Query: 213 TQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAA 270
           + +   GL  + S   NL+ I+L+  G++D +L  LA  S L  L L  +  I+D GL  
Sbjct: 398 SSINEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLILKLGLSSSISDKGLGF 457

Query: 271 LTSLTG-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLT 326
           ++S  G L  LDL+  + ITD G A L N  K ++ L +C    +TD+G+ H+  L  LT
Sbjct: 458 ISSKCGKLIELDLYRCSSITDDGLAALANGCKKIKLLNLCYCNKITDSGLSHLGALEELT 517

Query: 327 LLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCK 383
            L L     +T   +  ++ G   LV L++     +  +GL  L     NLR LT+  C+
Sbjct: 518 NLELRCLVRITGIGISSVVIGCKSLVELDLKRCYSVDDSGLWALARYALNLRQLTISYCQ 577

Query: 384 VT 385
           VT
Sbjct: 578 VT 579



 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 5/120 (4%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRI-HGGLVNLK-GLMK 59
            +L+  S L  L    +++I+ +G+   +     L++LDL RC+ I   GL  L  G  K
Sbjct: 431 HHLAKCSELLILKLGLSSSISDKGLGFISSKCGKLIELDLYRCSSITDDGLAALANGCKK 490

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGI-AYLKGLQKLTLLNLEGC 117
           ++ LN+ +CN ITDS +  L  L  L +L++ C  ++T  GI + + G + L  L+L+ C
Sbjct: 491 IKLLNLCYCNKITDSGLSHLGALEELTNLELRCLVRITGIGISSVVIGCKSLVELDLKRC 550


>gi|390335362|ref|XP_003724129.1| PREDICTED: uncharacterized protein LOC100890653 [Strongylocentrotus
           purpuratus]
          Length = 990

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 155/314 (49%), Gaps = 20/314 (6%)

Query: 84  NLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL-NR 140
           +L+ L + C K T + +   ++    L+ LNL  CP +T   L  +++L  L +LNL N 
Sbjct: 619 HLQRLALDCYKYTTNELLQTVRPHIHLSSLNLASCPLITDQGLLQITSLKKLQHLNLSNN 678

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVHLKGLTNLESLNLDSCGIGDEGLV 197
             L+D   +   +  SL  L L    +TD   E  V +    NL +L+L+   + D  ++
Sbjct: 679 KSLTDKVFQTVQEFSSLTTLLLEGTGVTDAGLETFVAVPP-PNLTNLSLNRTNVTDMAVL 737

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
            L  L  LK L L  TQV S  L H+  L+ L S+N+S   +   +L KL  ++ LK L+
Sbjct: 738 FLARLSKLKNLGLEQTQVKS--LEHVGHLSQLVSLNVSRNRLQRDALLKLHQVTHLKVLH 795

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG------GGL 311
           +   +   TG  ALT L GL  + L    + D         K +  + +C         +
Sbjct: 796 ISHVEGI-TGDEALTCLQGLQLMQL---SLPDRHTTTDNGLKCIAGMSLCSIDLTDYSNI 851

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
           TDAG+ H+ D++SL  L+++ N  +T   ++ +SGLT L+ L++  + +   G + +  L
Sbjct: 852 TDAGIHHLADMTSLHKLSIT-NTKVTSAGMQYLSGLTELLELHLDRTLVDDEGAKVIGQL 910

Query: 372 KNLRSLTLESCKVT 385
             L+ L++   K+T
Sbjct: 911 TKLQVLSMAETKIT 924



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 148/317 (46%), Gaps = 57/317 (17%)

Query: 34  INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITD---SDMKPLSGLT------ 83
           I+L  L+L  C  I   GL+ +  L KL+ LN+     +TD     ++  S LT      
Sbjct: 643 IHLSSLNLASCPLITDQGLLQITSLKKLQHLNLSNNKSLTDKVFQTVQEFSSLTTLLLEG 702

Query: 84  -----------------NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
                            NL +L ++ + VTD  + +L  L KL  L LE   V +  L+ 
Sbjct: 703 TGVTDAGLETFVAVPPPNLTNLSLNRTNVTDMAVLFLARLSKLKNLGLEQTQVKS--LEH 760

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-IT-DECLVHLKGLTNLE-- 182
           +  L  L  LN++R +L  D   K  ++  LKVL++   E IT DE L  L+GL  ++  
Sbjct: 761 VGHLSQLVSLNVSRNRLQRDALLKLHQVTHLKVLHISHVEGITGDEALTCLQGLQLMQLS 820

Query: 183 ---------------------SLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
                                S++L D   I D G+ +L  + +L  L +++T+V S+G+
Sbjct: 821 LPDRHTTTDNGLKCIAGMSLCSIDLTDYSNITDAGIHHLADMTSLHKLSITNTKVTSAGM 880

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA--LTSLTGLT 278
           ++LSGLT L  ++L  T + D   + +  L+ L+ L++   +ITD  L +  + S   ++
Sbjct: 881 QYLSGLTELLELHLDRTLVDDEGAKVIGQLTKLQVLSMAETKITDRFLLSNVINSCPHIS 940

Query: 279 HLDLFGARITDSGAAYL 295
            L+L    I++ G   L
Sbjct: 941 RLNLSRTNISERGITVL 957



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 9/227 (3%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKL 60
           E++  LS L SL+  RN  +    +     + +L  L +     I G   L  L+GL +L
Sbjct: 759 EHVGHLSQLVSLNVSRNR-LQRDALLKLHQVTHLKVLHISHVEGITGDEALTCLQGL-QL 816

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
             L++   +  TD+ +K ++G++ L S+ ++  S +TD+GI +L  +  L  L++    V
Sbjct: 817 MQLSLPDRHTTTDNGLKCIAGMS-LCSIDLTDYSNITDAGIHHLADMTSLHKLSITNTKV 875

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH--LKG 177
           T+A +  LS L  L  L+L+R  + D+G +   ++  L+VL++   +ITD  L+   +  
Sbjct: 876 TSAGMQYLSGLTELLELHLDRTLVDDEGAKVIGQLTKLQVLSMAETKITDRFLLSNVINS 935

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
             ++  LNL    I + G+  L+ L  L  L L  T V     +HL+
Sbjct: 936 CPHISRLNLSRTNISERGITVLS-LPYLTLLNLDYTCVSVDCAQHLT 981


>gi|290988772|ref|XP_002677066.1| predicted protein [Naegleria gruberi]
 gi|284090672|gb|EFC44322.1| predicted protein [Naegleria gruberi]
          Length = 289

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 120/241 (49%), Gaps = 1/241 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N + D+    L  +T L +L+I  + + D+ +  +  +++LT L+LE   +      S+S
Sbjct: 44  NILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSIS 103

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L +L YLN+    ++D+G E  S++ +L  L +    IT +    +  L NL  LN+  
Sbjct: 104 ELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAY 163

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKL 247
             IGDEG   ++ + +LK L++S   +   G + +S L  L  + +S    I D   R +
Sbjct: 164 NNIGDEGAKFISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMI 223

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
           + +  L  L +    I + G  +++ +  LTHLD+    I   G + +R+ K+L  L I 
Sbjct: 224 SEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLSIE 283

Query: 308 G 308
           G
Sbjct: 284 G 284



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 109/220 (49%)

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           N + D     L  +T L +L + +  I D  +  ++ +  L  L+L   Q+ + G + +S
Sbjct: 44  NILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSIS 103

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
            L NL  +N+    I+D  +  ++ L +L  L + + +IT      ++ L  LT L++  
Sbjct: 104 ELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAY 163

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             I D GA ++   K+L+ L+I   G++  G K I +L  LT+L +SQN ++ D+   +I
Sbjct: 164 NNIGDEGAKFISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMI 223

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           S +  L  L + +  I +AG   +  +  L  L +   ++
Sbjct: 224 SEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEI 263



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 17/284 (5%)

Query: 66  KWCNCITDSDMKPLSGLTN--------------LKSLQISCSKVTDSGIAYLKGLQKLTL 111
           +W N I D     LS + N                S+  + + + D+    L  + +LT 
Sbjct: 5   QWLNVIRDR--SELSMMANNHLVNQVNNEFLDCFVSITFARNILNDNWFNMLGRMTQLTT 62

Query: 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
           L +    +    +  +S +  L  L+L   Q+ ++G +  S++ +L  LN+G N I DE 
Sbjct: 63  LEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSISELRNLTYLNIGNNPINDEG 122

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
           +  +  L NL  L + S  I  +    ++ L NL  L ++   +G  G + +S + +L+ 
Sbjct: 123 IESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAYNNIGDEGAKFISEIKSLKI 182

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDS 290
           +++S  GIS    + ++ L  L  L +     I D G   ++ +  L  L +    I ++
Sbjct: 183 LDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMISEMKQLNELYIQDCFIGNA 242

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           GA  +     L  L+I    +   G   I+D+  L+ L++   C
Sbjct: 243 GAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLSIEGQC 286



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 9/230 (3%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L  ++ LT+L    NN I    +K  + +  L  LDLE     + G  ++  L  L  LN
Sbjct: 54  LGRMTQLTTLEIG-NNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSISELRNLTYLN 112

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I D  ++ +S L NL  L +S  ++T     ++  L  LTLLN+    +     
Sbjct: 113 IG-NNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAYNNIGDEGA 171

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLES 183
             +S + SL  L+++   +S  G +  S++  L VL +  N  I DE    +  +  L  
Sbjct: 172 KFISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMISEMKQLNE 231

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG------LRHLSGLT 227
           L +  C IG+ G ++++ +  L  L++S+ ++   G      ++HLS L+
Sbjct: 232 LYIQDCFIGNAGAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLS 281



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 260 ARQI-TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
           AR I  D     L  +T LT L++    I D+    +   K L  L++    + + G K 
Sbjct: 42  ARNILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKS 101

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
           I +L +LT LN+  N  + D+ +E IS L  L  L VS+ RITS   + +  L NL
Sbjct: 102 ISELRNLTYLNIGNNP-INDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNL 156


>gi|290984930|ref|XP_002675179.1| predicted protein [Naegleria gruberi]
 gi|284088774|gb|EFC42435.1| predicted protein [Naegleria gruberi]
          Length = 330

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 5/289 (1%)

Query: 72  TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
           +D + +    + +L  L I  + +   G   +  + +LT L + G  +      S+S L 
Sbjct: 43  SDGNFQVFEMMKHLTHLDIRNNGIGYEGAQSIGKVMQLTRLCIAGNNIGEKGAKSISQLT 102

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
            L  L+++  QL D G +  S++  L  LN+  N ITD+  + L  L  L  LN+ S  I
Sbjct: 103 QLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGNRITDKGAIFLSDLKELRFLNISSNTI 162

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS----LRKL 247
             EG+ +LT L  L  L++S   +  S  + +S +  L ++NLS+     GS    +R +
Sbjct: 163 LLEGIKSLTNLKQLTQLDISYNNILPSYAQTISEMDQLTNLNLSYNDYGWGSDSNGVRYI 222

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
             + +LK+L      I       +  +  L  L++  + I  S A  + +   L  L+I 
Sbjct: 223 CEMKNLKTLTFGGICIRQYIFNYIKEMKQLACLNIRSSYIGSSSAKLISSMNQLTELDIS 282

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
              + D G KHI ++  LT LN+ + C +  +  E +  +  L  LN+S
Sbjct: 283 YNEIGDVGAKHISEMDQLTSLNV-EGCRINSEGTEYLKQMKQLTYLNIS 330



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 135/285 (47%), Gaps = 7/285 (2%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
            + F  + +L  LD+      + G  ++  +M+L  L I   N I +   K +S LT L 
Sbjct: 47  FQVFEMMKHLTHLDIRNNGIGYEGAQSIGKVMQLTRLCIAGNN-IGEKGAKSISQLTQLT 105

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           +L +S +++ D G  ++  L +LT LN+ G  +T      LS L  L +LN++   +  +
Sbjct: 106 TLDVSFNQLCDYGTKFISQLSRLTDLNIRGNRITDKGAIFLSDLKELRFLNISSNTILLE 165

Query: 147 GCEKFSKIGSLKVLNLGFNEI---TDECLVHLKGLTNLESLNLDSCGIGDE--GLVNLTG 201
           G +  + +  L  L++ +N I     + +  +  LTNL +L+ +  G G +  G+  +  
Sbjct: 166 GIKSLTNLKQLTQLDISYNNILPSYAQTISEMDQLTNL-NLSYNDYGWGSDSNGVRYICE 224

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           + NLK L      +      ++  +  L  +N+  + I   S + ++ ++ L  L++   
Sbjct: 225 MKNLKTLTFGGICIRQYIFNYIKEMKQLACLNIRSSYIGSSSAKLISSMNQLTELDISYN 284

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           +I D G   ++ +  LT L++ G RI   G  YL+  K L  L I
Sbjct: 285 EIGDVGAKHISEMDQLTSLNVEGCRINSEGTEYLKQMKQLTYLNI 329



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 139/314 (44%), Gaps = 22/314 (7%)

Query: 82  LTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
           L N+   ++S  +  +D      + ++ LT L++    +      S+  +  L  L +  
Sbjct: 28  LQNIVKFRVSIDRDESDGNFQVFEMMKHLTHLDIRNNGIGYEGAQSIGKVMQLTRLCIAG 87

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
             + + G +  S++  L  L++ FN++ D     +  L+ L  LN+    I D+G + L+
Sbjct: 88  NNIGEKGAKSISQLTQLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGNRITDKGAIFLS 147

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
            L  L+ L +S   +   G++ L+ L  L  +++S+  I     + ++ +  L +LNL  
Sbjct: 148 DLKELRFLNISSNTILLEGIKSLTNLKQLTQLDISYNNILPSYAQTISEMDQLTNLNLSY 207

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
                                 +G     +G  Y+   KNL++L   G  +      +IK
Sbjct: 208 ND--------------------YGWGSDSNGVRYICEMKNLKTLTFGGICIRQYIFNYIK 247

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
           ++  L  LN+ ++  +   + +LIS +  L  L++S + I   G +H+  +  L SL +E
Sbjct: 248 EMKQLACLNI-RSSYIGSSSAKLISSMNQLTELDISYNEIGDVGAKHISEMDQLTSLNVE 306

Query: 381 SCKVTANDIKRLQS 394
            C++ +   + L+ 
Sbjct: 307 GCRINSEGTEYLKQ 320



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 5/243 (2%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I  +G K+ + L  L  LD+        G   +  L +L  LNI+  N ITD     L
Sbjct: 88  NNIGEKGAKSISQLTQLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRG-NRITDKGAIFL 146

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           S L  L+ L IS + +   GI  L  L++LT L++    +  +   ++S +  L  LNL+
Sbjct: 147 SDLKELRFLNISSNTILLEGIKSLTNLKQLTQLDISYNNILPSYAQTISEMDQLTNLNLS 206

Query: 140 RCQL---SD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
                  SD +G     ++ +LK L  G   I      ++K +  L  LN+ S  IG   
Sbjct: 207 YNDYGWGSDSNGVRYICEMKNLKTLTFGGICIRQYIFNYIKEMKQLACLNIRSSYIGSSS 266

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
              ++ +  L  L++S  ++G  G +H+S +  L S+N+    I+      L  +  L  
Sbjct: 267 AKLISSMNQLTELDISYNEIGDVGAKHISEMDQLTSLNVEGCRINSEGTEYLKQMKQLTY 326

Query: 256 LNL 258
           LN+
Sbjct: 327 LNI 329



 Score = 45.1 bits (105), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 87/184 (47%), Gaps = 5/184 (2%)

Query: 8   LSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 65
           LS+L  L F    +N I  +G+K+   L  L +LD+     +      +  + +L +LN+
Sbjct: 146 LSDLKELRFLNISSNTILLEGIKSLTNLKQLTQLDISYNNILPSYAQTISEMDQLTNLNL 205

Query: 66  KWCNCITDSD---MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
            + +    SD   ++ +  + NLK+L      +      Y+K +++L  LN+    + ++
Sbjct: 206 SYNDYGWGSDSNGVRYICEMKNLKTLTFGGICIRQYIFNYIKEMKQLACLNIRSSYIGSS 265

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
               +S++  L  L+++  ++ D G +  S++  L  LN+    I  E   +LK +  L 
Sbjct: 266 SAKLISSMNQLTELDISYNEIGDVGAKHISEMDQLTSLNVEGCRINSEGTEYLKQMKQLT 325

Query: 183 SLNL 186
            LN+
Sbjct: 326 YLNI 329


>gi|148909462|gb|ABR17829.1| unknown [Picea sitchensis]
          Length = 455

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 159/337 (47%), Gaps = 43/337 (12%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           +TD  +  L  LT L  L +  SK+++ G   LK   KL  LNL    VT      L AL
Sbjct: 20  VTDLVVSSLQALTQLHQLDMWGSKISNEGAILLKAFPKLNCLNLAWTNVT-----RLPAL 74

Query: 131 GSLFYLNLNRCQLSD--DGCEK------------FSKIGSLKVL------NLGFNEITDE 170
            SL  LN+++C +    DG E+             S I + +VL      NL F +++  
Sbjct: 75  VSLTSLNMSKCTIESILDGLEEPEISLLTLHFSGASFIDAYRVLSCLHAQNLTFLDLSGS 134

Query: 171 CL---VHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSG- 225
            +     L G+  LESL+L   G+ D  + ++  +  NLK L LS T+V S  L  L+G 
Sbjct: 135 SIDNVSFLAGMNRLESLDLSCTGVIDSSMNSVADIGANLKHLNLSTTRVTSDALAILAGN 194

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           +  LE I+LS T + D +L  L  +S+L++++L           + T++ G  H+    +
Sbjct: 195 VPKLEFISLSHTMVDDNALAYLGLISALRNISL-----------SFTNIKGFIHVGESES 243

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
               S A+ LR  ++L  L++    ++D   + +  L  L  L+L  +  L+D +L  +S
Sbjct: 244 NPQFSLAS-LRKLEHLEILDLENTHISDLACQPLIFLKELYHLSLRSDF-LSDISLHTVS 301

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
            L  L  L++  + +T  GL    P   L+ L L  C
Sbjct: 302 SLPKLKYLSIQGAVVTKTGLCSFVPPPLLQVLDLSDC 338



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 21/238 (8%)

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 209
           + S + SL  L+LG   +TD  +  L+ LT L  L++    I +EG + L     L CL 
Sbjct: 3   RLSVLTSLTSLDLGGLPVTDLVVSSLQALTQLHQLDMWGSKISNEGAILLKAFPKLNCLN 62

Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS----SLKSLNLDARQITD 265
           L+ T V       L  L +L S+N+S   I       L GL     SL +L+       D
Sbjct: 63  LAWTNV-----TRLPALVSLTSLNMSKCTIES----ILDGLEEPEISLLTLHFSGASFID 113

Query: 266 TGLAALTSLTG--LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL- 322
                L+ L    LT LDL G+ I +   ++L     L SL++   G+ D+ +  + D+ 
Sbjct: 114 -AYRVLSCLHAQNLTFLDLSGSSIDN--VSFLAGMNRLESLDLSCTGVIDSSMNSVADIG 170

Query: 323 SSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           ++L  LNLS    +T   L +++G +  L  +++S++ +    L +L  +  LR+++L
Sbjct: 171 ANLKHLNLS-TTRVTSDALAILAGNVPKLEFISLSHTMVDDNALAYLGLISALRNISL 227



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 5/89 (5%)

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           + +L+ L+SL SL+L    +TD  +++L +LT L  LD++G++I++ GA  L+ F  L  
Sbjct: 1   MARLSVLTSLTSLDLGGLPVTDLVVSSLQALTQLHQLDMWGSKISNEGAILLKAFPKLNC 60

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
           L +    +T      +  L SLT LN+S+
Sbjct: 61  LNLAWTNVT-----RLPALVSLTSLNMSK 84


>gi|124002318|ref|ZP_01687171.1| leucine-rich protein [Microscilla marina ATCC 23134]
 gi|123992147|gb|EAY31515.1| leucine-rich protein [Microscilla marina ATCC 23134]
          Length = 1282

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 196/437 (44%), Gaps = 71/437 (16%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKA----------FAGLINLVKLD----LERCTRIH 48
           ENL  L+ LT LS   N     +G++           F  +  L  LD    LE+    H
Sbjct: 255 ENLDALTELTELSLGYNGISKIEGLEKLTKLKMLGLMFNRVTKLENLDTLTELEKLWMNH 314

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
            G+  ++ L KL  L      C   + ++ L  LT L SL +  +K+  S I  L+ L  
Sbjct: 315 TGIKKIENLDKLTKLTHLSLMCSKVTKIENLEALTQLTSLSLHATKI--SKIENLEALTN 372

Query: 109 LTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGF 164
           LT L ++G  V     LD+L+ L  L         L  +   K   +G    L+ L+LG 
Sbjct: 373 LTKLRVDGNKVAKIENLDNLTQLDDLM--------LGGNPISKIENLGHLIKLRKLDLGG 424

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHL 223
             IT   + +L+GL  LE L+L    I  E + NL GL  L+ LEL  T+V     L HL
Sbjct: 425 LAITK--IENLEGLRTLEQLDLGGSQI--ETIENLEGLTGLQKLELRATKVSKIENLNHL 480

Query: 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
             LT L   +LS T I+   +  L GL  LK L+L   +IT   +  L  L+ L  L L 
Sbjct: 481 PALTEL---DLSETAIT--KIEGLTGLEGLKELSLSKNKITK--IENLAGLSKLEKLSLC 533

Query: 284 GARITD----SGAAYLRN----------FKNLRSLEICGG-GLTDAGVKHIKD---LSSL 325
            + ++     +G   LR            +NLR L       L +  + HI+     + L
Sbjct: 534 ASNLSKIENLTGLPKLRELCLEKNAIECLENLRGLPALKELDLNNNQITHIQPNALPTQL 593

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT-LESCKV 384
             LNLSQN  +    +E ++G+TGL  L++S + I+         ++N   L  LE+  +
Sbjct: 594 AELNLSQNQLI---KVEHLAGVTGLTELDLSENNISK--------IENFEDLPALETLDL 642

Query: 385 TANDIKRLQS-RDLPNL 400
           + N I RL++   LPNL
Sbjct: 643 SYNKITRLENLTALPNL 659



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 176/378 (46%), Gaps = 62/378 (16%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
            ENL+ L +L +L  R NN    + ++  AGL  L +LDL              G  K+E
Sbjct: 166 VENLNHLKHLQNLDLRENN---IKKIENLAGLTALTRLDL-----------GYNGFGKIE 211

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            L+                 L  LK L++  + +    I  L  L +L  LNL     + 
Sbjct: 212 GLH----------------NLPRLKQLELEENDI--KKIENLHHLPQLKSLNLRFN--SF 251

Query: 122 ACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
             L++L AL  L  L+L    +S  +G EK +K   LK+L L FN +T   L +L  LT 
Sbjct: 252 EKLENLDALTELTELSLGYNGISKIEGLEKLTK---LKMLGLMFNRVTK--LENLDTLTE 306

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           LE L ++  GI  + + NL  L  L  L L  ++V  + + +L  LT L S++L  T IS
Sbjct: 307 LEKLWMNHTGI--KKIENLDKLTKLTHLSLMCSKV--TKIENLEALTQLTSLSLHATKIS 362

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD---LFGARITDSGAAYLRN 297
              +  L  L++L  L +D  ++     A + +L  LT LD   L G  I  S    L +
Sbjct: 363 --KIENLEALTNLTKLRVDGNKV-----AKIENLDNLTQLDDLMLGGNPI--SKIENLGH 413

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
              LR L++  GGL    +++++ L +L  L+L  +     +T+E + GLTGL  L +  
Sbjct: 414 LIKLRKLDL--GGLAITKIENLEGLRTLEQLDLGGS---QIETIENLEGLTGLQKLELRA 468

Query: 358 SRITS-AGLRHLKPLKNL 374
           ++++    L HL  L  L
Sbjct: 469 TKVSKIENLNHLPALTEL 486



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 169/382 (44%), Gaps = 57/382 (14%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGM-------------------KAFAGLINLVKLDLER 43
           ENL  L+NLT L    N     + +                   +    LI L KLDL  
Sbjct: 365 ENLEALTNLTKLRVDGNKVAKIENLDNLTQLDDLMLGGNPISKIENLGHLIKLRKLDL-- 422

Query: 44  CTRIHGGLV-----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 98
                GGL      NL+GL  LE L++      T   ++ L GLT L+ L++  +KV  S
Sbjct: 423 -----GGLAITKIENLEGLRTLEQLDLGGSQIET---IENLEGLTGLQKLELRATKV--S 472

Query: 99  GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
            I  L  L  LT L+L    +T   ++ L+ L  L  L+L++ +++    E  + +  L+
Sbjct: 473 KIENLNHLPALTELDLSETAITK--IEGLTGLEGLKELSLSKNKITK--IENLAGLSKLE 528

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
            L+L  + ++   + +L GL  L  L L+   I  E L NL GL  LK L+L++ Q+   
Sbjct: 529 KLSLCASNLSK--IENLTGLPKLRELCLEKNAI--ECLENLRGLPALKELDLNNNQITHI 584

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
               L   T L  +NLS   +    +  LAG++ L  L+L    I+   +     L  L 
Sbjct: 585 QPNALP--TQLAELNLSQNQLI--KVEHLAGVTGLTELDLSENNISK--IENFEDLPALE 638

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
            LDL   +IT      L    NLR + I    +T+     +     L  L+L QN     
Sbjct: 639 TLDLSYNKITR--LENLTALPNLREVNIYQNQITEIATDAVT--RQLQELDLEQN---QI 691

Query: 339 KTLELISGLTGLVSLNVSNSRI 360
            T+E++   TGL  ++V N++I
Sbjct: 692 STIEILVNFTGLSQVDVGNNQI 713


>gi|322790910|gb|EFZ15576.1| hypothetical protein SINV_11426 [Solenopsis invicta]
          Length = 526

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 158/319 (49%), Gaps = 44/319 (13%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLF 134
           L G+ NL++L +S C  +TD GI  A+ +    LT LNL  C  VT   L  ++     +
Sbjct: 229 LKGVPNLEALNLSGCYNITDIGITNAFCQEYPSLTELNLSLCKQVTDTSLSRIAQ----Y 284

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGD 193
             NL   +L   GC   +  G L +                 GL  L+ L+L SC  + D
Sbjct: 285 LKNLEHLELG--GCCNITNTGLLLIA---------------WGLKKLKRLDLRSCWHVSD 327

Query: 194 EGLVNLTGL--------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDG 242
            G+ +L GL          L+ L L D Q +    LRH+S G T L+SINLSF   I+D 
Sbjct: 328 IGIAHLAGLNRETADGNLALEHLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVCITDS 387

Query: 243 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNF 298
            ++ LA +SSL+ LNL +   I+D G+A L    + +T LD+ F  +I D    ++ +  
Sbjct: 388 GVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGL 447

Query: 299 KNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVS 356
            NL+SL +    ++D G+ K  K L  L  LN+ Q   LTD+ L  ++  +  L  +++ 
Sbjct: 448 FNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRGLHTVAESMKNLKCIDLY 507

Query: 357 N-SRITSAGLRHLKPLKNL 374
             ++IT++GL  +  L  L
Sbjct: 508 GCTKITTSGLERIMKLPQL 526



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 146/294 (49%), Gaps = 62/294 (21%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS-CSKVTDSGIA--- 101
           LKG+  LE+LN+  C  ITD       G+TN        L  L +S C +VTD+ ++   
Sbjct: 229 LKGVPNLEALNLSGCYNITD------IGITNAFCQEYPSLTELNLSLCKQVTDTSLSRIA 282

Query: 102 -YLK-----------------------GLQKLTLLNLEGCPVTA-------ACLDSLSAL 130
            YLK                       GL+KL  L+L  C   +       A L+  +A 
Sbjct: 283 QYLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDIGIAHLAGLNRETAD 342

Query: 131 G--SLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLN 185
           G  +L +L+L  CQ LSD+     S    +LK +NL F   ITD  + HL  +++L  LN
Sbjct: 343 GNLALEHLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVCITDSGVKHLARMSSLRELN 402

Query: 186 LDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISD 241
           L SC  I D G+  L  G   +  L++S   ++G   L H+S GL NL+S++LS   ISD
Sbjct: 403 LRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISD 462

Query: 242 GSLRKLAG-LSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 291
             + K+A  L  L++LN+    ++TD GL  +  S+  L  +DL+G  +IT SG
Sbjct: 463 EGICKIAKTLHDLETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTSG 516



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 40/240 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNLK-G 56
           GL  L  L  R    ++  G+   AGL        + L  L L+ C R+    L ++  G
Sbjct: 310 GLKKLKRLDLRSCWHVSDIGIAHLAGLNRETADGNLALEHLSLQDCQRLSDEALRHVSLG 369

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
              L+S+N+ +C CITDS +K L+ +++L+ L + SC  ++D G+AYL +G  ++T L++
Sbjct: 370 FTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDV 429

Query: 115 EGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C      A +     L +L  L+L+ CQ+SD+G  K +K                   
Sbjct: 430 SFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKIAKT------------------ 471

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
                L +LE+LN+  C  + D GL  +   + NLKC++L   T++ +SGL  +  L  L
Sbjct: 472 -----LHDLETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTSGLERIMKLPQL 526



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 127/248 (51%), Gaps = 38/248 (15%)

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 225
           LKG+ NLE+LNL  C  I D G+ N        LT L    C +++DT + S   ++L  
Sbjct: 229 LKGVPNLEALNLSGCYNITDIGITNAFCQEYPSLTELNLSLCKQVTDTSL-SRIAQYLKN 287

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 275
           L +LE     N++ TG+    L    GL  LK L+L +   ++D G+A L  L       
Sbjct: 288 LEHLELGGCCNITNTGL----LLIAWGLKKLKRLDLRSCWHVSDIGIAHLAGLNRETADG 343

Query: 276 --GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTL 327
              L HL L    R++D    ++   F  L+S+     +C   +TD+GVKH+  +SSL  
Sbjct: 344 NLALEHLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVC---ITDSGVKHLARMSSLRE 400

Query: 328 LNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKV 384
           LNL    N++D  +  L  G + + SL+VS   +I    L H+ + L NL+SL+L +C++
Sbjct: 401 LNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQI 460

Query: 385 TANDIKRL 392
           +   I ++
Sbjct: 461 SDEGICKI 468


>gi|290990770|ref|XP_002678009.1| predicted protein [Naegleria gruberi]
 gi|284091619|gb|EFC45265.1| predicted protein [Naegleria gruberi]
          Length = 329

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 117/235 (49%), Gaps = 10/235 (4%)

Query: 102 YLKGLQKLTLLNLEGC------PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 155
           ++K   K +++N++ C      P     +  +  L SL+   ++  Q+  +G +  S++ 
Sbjct: 96  FMKSQFKNSIVNVKFCYRLRNSPDKVKFISEMKQLTSLY---ISDNQIGVEGAKYISEMK 152

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
            L  L++ +N+I  E   ++  +  L SLN+   GIG EG   ++ +  L  L +   Q+
Sbjct: 153 QLTSLDITYNQIGVEGSKYISEMKQLTSLNIYYNGIGVEGTKYISEMKQLTSLNIGYNQI 212

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
           G  G +++S +  L S+++ + GI     + ++ +  L SLN+   QI   G   ++ + 
Sbjct: 213 GVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKFISEMK 272

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
            LT L++ G +I   GA ++   K L SL+I    +   G K I ++  LT L++
Sbjct: 273 QLT-LNITGNQIGVEGAKFISEMKQLTSLDITYNQIGVEGSKFISEMKQLTSLDI 326



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 2/202 (0%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L SL +    IG EG   ++ +  L  L+++  Q+G  G +++S +  L S+N+ + 
Sbjct: 127 MKQLTSLYISDNQIGVEGAKYISEMKQLTSLDITYNQIGVEGSKYISEMKQLTSLNIYYN 186

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
           GI     + ++ +  L SLN+   QI   G   ++ +  LT LD++   I   G+ Y+  
Sbjct: 187 GIGVEGTKYISEMKQLTSLNIGYNQIGVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISE 246

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
            K L SL I    +   G K I ++  LT LN++ N  +  +  + IS +  L SL+++ 
Sbjct: 247 MKQLTSLNIGYNQIGVEGSKFISEMKQLT-LNITGN-QIGVEGAKFISEMKQLTSLDITY 304

Query: 358 SRITSAGLRHLKPLKNLRSLTL 379
           ++I   G + +  +K L SL +
Sbjct: 305 NQIGVEGSKFISEMKQLTSLDI 326



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 118/255 (46%), Gaps = 27/255 (10%)

Query: 54  LKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 111
           +K   K   +N+K+C  + +S   +K +S +  L SL IS +++   G  Y+  +++LT 
Sbjct: 97  MKSQFKNSIVNVKFCYRLRNSPDKVKFISEMKQLTSLYISDNQIGVEGAKYISEMKQLTS 156

Query: 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
           L++                           Q+  +G +  S++  L  LN+ +N I  E 
Sbjct: 157 LDI------------------------TYNQIGVEGSKYISEMKQLTSLNIYYNGIGVEG 192

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
             ++  +  L SLN+    IG EG   ++ +  L  L++    +G  G +++S +  L S
Sbjct: 193 TKYISEMKQLTSLNIGYNQIGVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISEMKQLTS 252

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           +N+ +  I     + ++ +  L +LN+   QI   G   ++ +  LT LD+   +I   G
Sbjct: 253 LNIGYNQIGVEGSKFISEMKQL-TLNITGNQIGVEGAKFISEMKQLTSLDITYNQIGVEG 311

Query: 292 AAYLRNFKNLRSLEI 306
           + ++   K L SL+I
Sbjct: 312 SKFISEMKQLTSLDI 326



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 1/140 (0%)

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           S   ++ ++ +  L SL +   QI   G   ++ +  LT LD+   +I   G+ Y+   K
Sbjct: 117 SPDKVKFISEMKQLTSLYISDNQIGVEGAKYISEMKQLTSLDITYNQIGVEGSKYISEMK 176

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
            L SL I   G+   G K+I ++  LT LN+  N  +  +  + IS +  L SL++  + 
Sbjct: 177 QLTSLNIYYNGIGVEGTKYISEMKQLTSLNIGYN-QIGVEGAKYISEMKQLTSLDIYYNG 235

Query: 360 ITSAGLRHLKPLKNLRSLTL 379
           I   G +++  +K L SL +
Sbjct: 236 IGVEGSKYISEMKQLTSLNI 255


>gi|326430775|gb|EGD76345.1| variable lymphocyte receptor [Salpingoeca sp. ATCC 50818]
          Length = 1124

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 172/418 (41%), Gaps = 47/418 (11%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKA--FAGLINLVKLDLERCTRIHGGLVNLKGLMK 59
           + + +GLS LT+L+  R   +  Q + A  F GL +L +LDL              GL  
Sbjct: 224 SSSFAGLSALTTLNLNR---VPLQTLSAQTFQGLSSLTELDLSNKKIAAIPTQAFVGLSS 280

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           +ESLN++  N ++      +S +  L SL +S   +T         L  L  + L+G P+
Sbjct: 281 IESLNLQG-NPLSKLSEGAISDMPKLTSLDLSNLAITAIPARSFDNLAALGNITLQGNPI 339

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
                 S S++ SL  L+L+RC+L+      F+    L  L L  N IT      L+GL+
Sbjct: 340 AQLTNASFSSVPSLHTLDLSRCKLTSVPAAAFTAATRLSALTLARNAITTIAARALRGLS 399

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            L + ++ +                L+ L  S  Q          GLT+L ++NL+ T  
Sbjct: 400 KLTAFDISNNP--------------LRALPASIFQ----------GLTSLATLNLAHTNC 435

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           +      L  L +L S++     +          L  L HLDL  ARIT      L N  
Sbjct: 436 TLLPPALLTPLHALTSISAAGTPLRAIATGTFDGLPALQHLDLSNARITALAPHSLHNLP 495

Query: 300 NLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
            L  L + G  L +     +  DLSSLT L+LS    +       +SG T L +L + ++
Sbjct: 496 RLHDLALGGNPLANISSHALGGDLSSLTTLDLSA-LRIAAIAPHAMSGATNLTTLLLDHN 554

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTAN---------------DIKRLQSRDLPNLV 401
            IT+        L  L +L + S    A                D+ RL   +LP+ V
Sbjct: 555 AITALAADTFAGLSRLATLRITSNPALATLAGGAFDGLSALATLDLSRLPVAELPSHV 612



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 161/385 (41%), Gaps = 25/385 (6%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMK 77
           NN IT+    AFA L  L  L++    ++ G L  N+   +          N +      
Sbjct: 119 NNPITSIEAGAFATLTALNHLNMSSL-KLAGALSGNMFSTLTALLTLQLDGNQLDTLPAN 177

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
              GLT+L+SL ++ + ++       +GL  L  L+L G P++     S + L +L  LN
Sbjct: 178 AFDGLTSLQSLNLANNPISILNADTFQGLSSLLSLSLAGAPISTLSSSSFAGLSALTTLN 237

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           LNR  L     + F  + SL  L+L   +I         GL+++ESLNL    +      
Sbjct: 238 LNRVPLQTLSAQTFQGLSSLTELDLSNKKIAAIPTQAFVGLSSIESLNLQGNPLSKLSEG 297

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
            ++ +  L  L+LS+  + +   R    L  L +I L    I+  +    + + SL +L+
Sbjct: 298 AISDMPKLTSLDLSNLAITAIPARSFDNLAALGNITLQGNPIAQLTNASFSSVPSLHTLD 357

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
           L   ++T    AA T+ T L+ L L    IT   A  LR    L + +I    L      
Sbjct: 358 LSRCKLTSVPAAAFTAATRLSALTLARNAITTIAARALRGLSKLTAFDISNNPLRALPAS 417

Query: 318 HIKDLSSLTLLNLSQ-NC-----------------NLTDKTLELIS-----GLTGLVSLN 354
             + L+SL  LNL+  NC                 +     L  I+     GL  L  L+
Sbjct: 418 IFQGLTSLATLNLAHTNCTLLPPALLTPLHALTSISAAGTPLRAIATGTFDGLPALQHLD 477

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTL 379
           +SN+RIT+     L  L  L  L L
Sbjct: 478 LSNARITALAPHSLHNLPRLHDLAL 502



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 138/344 (40%), Gaps = 35/344 (10%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKV--TDSGIAYLKGLQKLTLLNLEGCPVT---AAC 123
           N IT       +GL+ L +L+I+ +    T +G A+  GL  L  L+L   PV    +  
Sbjct: 554 NAITALAADTFAGLSRLATLRITSNPALATLAGGAF-DGLSALATLDLSRLPVAELPSHV 612

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
              +S+L S+    ++   L  +     S + ++ +  +  + +       L  LT   S
Sbjct: 613 FAGMSSLQSVVLTGVDLHTLQPNAFANLSHVAAISLAGMSLSSLPSHAFGALPALT---S 669

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDG 242
           L+LD+  +         G   L       +  + +   R  SG T + S+NL+   I+  
Sbjct: 670 LSLDNNPLASLNTDTFAGPLPLLTTLDLSSHGITALPPRTFSGATAVRSLNLAHNAITTI 729

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           +     GLSS   L L    I      +   L  LT LDL  + +T   +       NL 
Sbjct: 730 APDAFLGLSSATQLVLAGNPIAHVSAGSFAGLGALTSLDLSTSALTGIVSGSFSGLANLT 789

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC--NLTD---------KTLEL-------- 343
           +L +    L          LSSL  L+++  C   L D         +TL L        
Sbjct: 790 TLTVDTPHLRHLFPGSFTGLSSLHHLSIANTCVTALPDGVLSPLVHVRTLSLRNSSLAGA 849

Query: 344 ------ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
                   GL+ LV+L++SN+ +T+ G +  +PL   R+L L S
Sbjct: 850 AVSTLTFDGLSQLVALDLSNNDMTAIGDKAFRPLSATRTLNLSS 893



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 140/340 (41%), Gaps = 31/340 (9%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA----CLDSLSALGSLF 134
           +SG TNL +L +  + +T        GL +L  L +   P  A       D LSAL +L 
Sbjct: 540 MSGATNLTTLLLDHNAITALAADTFAGLSRLATLRITSNPALATLAGGAFDGLSALATL- 598

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNL-----------GFNEITDECLVHLKGLTNLES 183
             +L+R  +++     F+ + SL+ + L            F  ++    + L G++ L S
Sbjct: 599 --DLSRLPVAELPSHVFAGMSSLQSVVLTGVDLHTLQPNAFANLSHVAAISLAGMS-LSS 655

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDG 242
           L   + G           L  L  L L +  + S      +G   L +    S  GI+  
Sbjct: 656 LPSHAFG----------ALPALTSLSLDNNPLASLNTDTFAGPLPLLTTLDLSSHGITAL 705

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
             R  +G ++++SLNL    IT     A   L+  T L L G  I    A        L 
Sbjct: 706 PPRTFSGATAVRSLNLAHNAITTIAPDAFLGLSSATQLVLAGNPIAHVSAGSFAGLGALT 765

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SL++    LT         L++LT L +    +L        +GL+ L  L+++N+ +T+
Sbjct: 766 SLDLSTSALTGIVSGSFSGLANLTTLTV-DTPHLRHLFPGSFTGLSSLHHLSIANTCVTA 824

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
                L PL ++R+L+L +  +    +  L    L  LV+
Sbjct: 825 LPDGVLSPLVHVRTLSLRNSSLAGAAVSTLTFDGLSQLVA 864



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 121/263 (46%), Gaps = 22/263 (8%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           IT    +  SG T ++SL ++ + +T        GL   T L L G P+      S + L
Sbjct: 702 ITALPPRTFSGATAVRSLNLAHNAITTIAPDAFLGLSSATQLVLAGNPIAHVSAGSFAGL 761

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSC 189
           G+L  L+L+   L+      FS + +L  L +    +         GL++L  L++ ++C
Sbjct: 762 GALTSLDLSTSALTGIVSGSFSGLANLTTLTVDTPHLRHLFPGSFTGLSSLHHLSIANTC 821

Query: 190 GIG-DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS--GLTNLESINLS---FTGISDGS 243
                +G+  L+ L +++ L L ++ +  + +  L+  GL+ L +++LS    T I D +
Sbjct: 822 VTALPDGV--LSPLVHVRTLSLRNSSLAGAAVSTLTFDGLSQLVALDLSNNDMTAIGDKA 879

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL--FGARITDSGAAYLRNFKNL 301
            R L   S+ ++LNL +  + +   AA     G+  L +    +    +  A L +  +L
Sbjct: 880 FRPL---SATRTLNLSSNALGNFTQAASHVFKGMKALQVLDLSSNPFSTPPANLASLSSL 936

Query: 302 RS-------LEICG-GGLTDAGV 316
           RS       L+ CG   L D+GV
Sbjct: 937 RSVCMGDVPLDCCGLEDLRDSGV 959


>gi|297171918|gb|ADI22905.1| hypothetical protein [uncultured Rhizobium sp. HF0500_35F13]
          Length = 307

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 2/165 (1%)

Query: 101 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160
           A + G++ +T+       +T   L+ L  LG++ YL+L+   + DDG    +K+  L+VL
Sbjct: 41  AQVSGIRSVTV-RFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVL 99

Query: 161 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
            L   EITD     L  L++L  L      +GD  +  L     L  L+++  QV  SGL
Sbjct: 100 VLSGTEITDAGFSQLSNLSDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGL 158

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
            HLSG+ NL+ + LS T I+D  L  L  ++ L+ L L+  +ITD
Sbjct: 159 SHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKITD 203



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 2/157 (1%)

Query: 60  LESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           + S+ +++ N  +T  D++PL  L  +  L +S + V D G+ ++  L+ L +L L G  
Sbjct: 46  IRSVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTE 105

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +T A    LS L  L  L  +   + D      +    L  L++   ++TD  L HL G+
Sbjct: 106 ITDAGFSQLSNLSDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGLSHLSGM 164

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
            NL+ L L    I D+GL +L  +  L+ L+L++T++
Sbjct: 165 KNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKI 201



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 152 SKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 209
           +++  ++ + + F  + +T + L  L  L  +  L+L    +GD+G+V++  L  L+ L 
Sbjct: 41  AQVSGIRSVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLV 100

Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 269
           LS T++  +G   LS L++L  +  S   + DG++  LA  + L  L++   Q+TD+GL+
Sbjct: 101 LSGTEITDAGFSQLSNLSDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGLS 159

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
            L+ +  L  L L    ITD G  +L++   L+ L++    +TD
Sbjct: 160 HLSGMKNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKITD 203



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 27/198 (13%)

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L  +  L+LSDT VG  G+ H++ L  L+ + LS T I+D    +L+ LS L  L   + 
Sbjct: 69  LGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDAGFSQLSNLSDLNQLTA-SE 127

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
            + D  +AAL S T L  LD+                         GG +TD+G+ H+  
Sbjct: 128 LMGDGTMAALASATKLNFLDM------------------------TGGQVTDSGLSHLSG 163

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           + +L  L LS+   +TDK LE +  +T L  L ++N++IT  GL  L+ L NL  L +  
Sbjct: 164 MKNLKRLTLSRTA-ITDKGLEHLQSITVLQDLQLNNTKITDEGLLLLEGLSNLNLLAITD 222

Query: 382 CKVTANDIKRLQSRDLPN 399
              T N + +LQ+  LP+
Sbjct: 223 TGTTLNGVTKLQAA-LPD 239



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 2/127 (1%)

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
           L  L  L  + +LDL    + D G  ++   + L+ L + G  +TDAG   + +LS L  
Sbjct: 63  LEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDAGFSQLSNLSDLNQ 122

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387
           L  S+   + D T+  ++  T L  L+++  ++T +GL HL  +KNL+ LTL    +T  
Sbjct: 123 LTASEL--MGDGTMAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTAITDK 180

Query: 388 DIKRLQS 394
            ++ LQS
Sbjct: 181 GLEHLQS 187



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 14/167 (8%)

Query: 226 LTNLESINLSFT--GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
           ++ + S+ + FT   ++   L  L  L ++  L+L    + D G+  +  L GL  L L 
Sbjct: 43  VSGIRSVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLS 102

Query: 284 GARITDSGAAYLRNFKNLRSL---EICGGGLTDAGVKHIKDLSSLTLLNL--SQNCNLTD 338
           G  ITD+G + L N  +L  L   E+ G G   A       L+S T LN        +TD
Sbjct: 103 GTEITDAGFSQLSNLSDLNQLTASELMGDGTMAA-------LASATKLNFLDMTGGQVTD 155

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
             L  +SG+  L  L +S + IT  GL HL+ +  L+ L L + K+T
Sbjct: 156 SGLSHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKIT 202


>gi|168703296|ref|ZP_02735573.1| hypothetical protein GobsU_27441 [Gemmata obscuriglobus UQM 2246]
          Length = 635

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 116/248 (46%), Gaps = 24/248 (9%)

Query: 72  TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
           TD +++  + +  ++ ++I+   VT +G+ +L  L KL  L ++ CPV +  +  L+A  
Sbjct: 228 TDDELRVFTSIREVEHVRIANGDVTTAGLYHLPRLSKLKTLEIDSCPVDS--IAPLTACP 285

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L +     ++ G E+ +      V+N       D     L+ LTNL  L LD C I
Sbjct: 286 NLTELVIT----AEAGTERRA------VVN-------DTGTAGLEKLTNLRRLKLDWCEI 328

Query: 192 GDEGLVNLTGLCNLKCLEL---SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
           G + L  L  L  L+ LEL       +  + L  L+GL  LE + L    I   +L  + 
Sbjct: 329 GGQTLRRLAALHRLRSLELMLFWGQHISGTDLAELTGLLELEKLTLH--PIPPWALEYIG 386

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
            L +L++L L      D+    L  LT L  L L G  +TD    +LR  ++LR+L I  
Sbjct: 387 PLRTLRTLTLSLFGEGDSEFRHLAQLTNLCWLKLTGPAVTDCALGHLRTLRSLRTLHISE 446

Query: 309 GGLTDAGV 316
             +T  G 
Sbjct: 447 SAVTATGA 454



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 111/254 (43%), Gaps = 39/254 (15%)

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
           +DD    F+ I  ++ + +   ++T   L HL  L+ L++L +DSC +  + +  LT   
Sbjct: 228 TDDELRVFTSIREVEHVRIANGDVTTAGLYHLPRLSKLKTLEIDSCPV--DSIAPLTACP 285

Query: 204 NLKCLELSDTQ-------VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
           NL  L ++          V  +G   L  LTNL  + L +  I   +LR+LA L  L+SL
Sbjct: 286 NLTELVITAEAGTERRAVVNDTGTAGLEKLTNLRRLKLDWCEIGGQTLRRLAALHRLRSL 345

Query: 257 NL---DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
            L     + I+ T LA LT L  L  L L    I      Y+   + LR+L +   G  D
Sbjct: 346 ELMLFWGQHISGTDLAELTGLLELEKLTLHP--IPPWALEYIGPLRTLRTLTLSLFGEGD 403

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 373
           +  +H+                         + LT L  L ++   +T   L HL+ L++
Sbjct: 404 SEFRHL-------------------------AQLTNLCWLKLTGPAVTDCALGHLRTLRS 438

Query: 374 LRSLTLESCKVTAN 387
           LR+L +    VTA 
Sbjct: 439 LRTLHISESAVTAT 452


>gi|383852952|ref|XP_003701989.1| PREDICTED: F-box/LRR-repeat protein 14-like [Megachile rotundata]
          Length = 479

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 161/323 (49%), Gaps = 42/323 (13%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           L G+ NL++L +S C  +TD+G+  A+ +    LT LNL  C   +       +LG +  
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDI-----SLGRIVQ 225

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 194
              N   L   GC   +  G   +L + +N            L  L+ L+L SC  + D 
Sbjct: 226 YLKNLEHLELGGCCNITNTG---LLCIAWN------------LKKLKRLDLRSCWQVSDL 270

Query: 195 GLVNLTGL--------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGS 243
           G+ +L G+          L+ L L D Q +    LRH+S GLT L+SINLSF   I+D  
Sbjct: 271 GIAHLAGVNREAAGGNFALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSG 330

Query: 244 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFK 299
           ++ LA +SSL+ LNL +   I+D G+A L    + ++ LD+ F  +I D    ++ +   
Sbjct: 331 VKHLAKMSSLRELNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLF 390

Query: 300 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 357
           NL+SL +    ++D G+ K  K L  L  LN+ Q   LTDK L  I+  +  L  +++  
Sbjct: 391 NLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYG 450

Query: 358 -SRITSAGLRHLKPLKNLRSLTL 379
            +RI++ GL  +  L  L +L L
Sbjct: 451 CTRISTNGLERIMKLPQLSTLNL 473



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 115/221 (52%), Gaps = 32/221 (14%)

Query: 28  KAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNL 85
           +A  G   L  L L+ C R+    L ++  GL  L+S+N+ +C CITDS +K L+ +++L
Sbjct: 281 EAAGGNFALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMSSL 340

Query: 86  KSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRC 141
           + L + SC  ++D G+AYL +G  +++ L++  C      A +     L +L  L+L+ C
Sbjct: 341 RELNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSAC 400

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 200
           Q+SD+G  K +K                        L +LE+LN+  C  + D+GL  + 
Sbjct: 401 QISDEGICKIAKT-----------------------LHDLETLNIGQCSRLTDKGLYTIA 437

Query: 201 -GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGI 239
             + +LKC++L   T++ ++GL  +  L  L ++NL    +
Sbjct: 438 ESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNLGLWHV 478



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 158/320 (49%), Gaps = 64/320 (20%)

Query: 54  LKGLMKLESLNIKWCNCITDSDM----------------------------KPLSGLTNL 85
           L+G+  LE+LN+  C  ITD+ +                            + +  L NL
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDISLGRIVQYLKNL 230

Query: 86  KSLQI-SCSKVTDSG---IAYLKGLQKLTLLNLEGCPVTA-------ACLDSLSALG--S 132
           + L++  C  +T++G   IA+   L+KL  L+L  C   +       A ++  +A G  +
Sbjct: 231 EHLELGGCCNITNTGLLCIAW--NLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNFA 288

Query: 133 LFYLNLNRCQ-LSDDGCEKFSKIG--SLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS 188
           L +L+L  CQ LSD+     S IG  +LK +NL F   ITD  + HL  +++L  LNL S
Sbjct: 289 LEHLSLQDCQRLSDEALRHIS-IGLTTLKSINLSFCVCITDSGVKHLAKMSSLRELNLRS 347

Query: 189 C-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL 244
           C  I D G+  L  G   +  L++S   ++G   L H+S GL NL+S++LS   ISD  +
Sbjct: 348 CDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGI 407

Query: 245 RKLAG-LSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKN 300
            K+A  L  L++LN+    ++TD GL  +  S+  L  +DL+G  RI+ +G   +     
Sbjct: 408 CKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQ 467

Query: 301 LRSLEICGGGLTDAGVKHIK 320
           L +L +        G+ H++
Sbjct: 468 LSTLNL--------GLWHVR 479



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 126/247 (51%), Gaps = 36/247 (14%)

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 225
           L+G+ NLE+LNL  C  I D GL+N        LT L    C ++SD  +G    R +  
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDISLG----RIVQY 226

Query: 226 LTNLESINLS-FTGISDGSLRKLAG-LSSLKSLNLDA-RQITDTGLAALTSLT------- 275
           L NLE + L     I++  L  +A  L  LK L+L +  Q++D G+A L  +        
Sbjct: 227 LKNLEHLELGGCCNITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGN 286

Query: 276 -GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLL 328
             L HL L    R++D    ++      L+S+     +C   +TD+GVKH+  +SSL  L
Sbjct: 287 FALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVC---ITDSGVKHLAKMSSLREL 343

Query: 329 NLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 385
           NL    N++D  +  L  G + + SL+VS   +I    L H+ + L NL+SL+L +C+++
Sbjct: 344 NLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQIS 403

Query: 386 ANDIKRL 392
              I ++
Sbjct: 404 DEGICKI 410



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 7/168 (4%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLN 64
           GL+ L S++      IT  G+K  A + +L +L+L  C  I   G+  L +G  ++ SL+
Sbjct: 311 GLTTLKSINLSFCVCITDSGVKHLAKMSSLRELNLRSCDNISDIGMAYLAEGGSRISSLD 370

Query: 65  IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTA 121
           + +C+ I D  +  +S GL NLKSL +S  +++D GI  + K L  L  LN+  C  +T 
Sbjct: 371 VSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTD 430

Query: 122 ACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEI 167
             L +++ ++  L  ++L  C ++S +G E+  K+  L  LNLG   +
Sbjct: 431 KGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNLGLWHV 478


>gi|300704108|ref|YP_003745710.1| leucine-rich-repeat type III effector protein (gala4) [Ralstonia
           solanacearum CFBP2957]
 gi|299071771|emb|CBJ43095.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
           solanacearum CFBP2957]
          Length = 461

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 147/318 (46%), Gaps = 10/318 (3%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS-KVTDSGIAYLKGL 106
           GG+ +      L  L +      TD+D++ L    +L+ L +S C   +T  GIA+L  L
Sbjct: 113 GGIPSPDDYPALRKLTL--VGPFTDADLQRLP--PSLRELDLSLCEGPITAVGIAHLLAL 168

Query: 107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
             L  L++ GC + A     L+   +L  LNL R  + D G   F++   L  LN+  N 
Sbjct: 169 -PLDRLDVSGCELNADSARLLAGHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVSSNG 227

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           I    +  L   T + +L++ +  IGDEG + L     L  L+ SD  +G  G + L+  
Sbjct: 228 IGPAGVRALAANTTITTLDISNNEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATS 287

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
           T L S++LS+  I    +  L   ++L++L+    ++       L + T LT L+L    
Sbjct: 288 TTLTSLDLSYNAIEAEGVEALGRNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNA 347

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           I ++GA        L  L +   G+    V    D   LT L+LS N  + D   ++++ 
Sbjct: 348 IGNAGARAFGANTTLVELNLSNNGIER--VPEWADNGKLTTLDLSNN-QIGDTAAQVLAA 404

Query: 347 LTGLVSLNVSNSRITSAG 364
              L +LNV ++RI   G
Sbjct: 405 SRTLTTLNVGSNRIGDTG 422



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 125/284 (44%), Gaps = 3/284 (1%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           + A   +  AG   L  L+L R      G+       KL +LN+   N I  + ++ L+ 
Sbjct: 180 LNADSARLLAGHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVS-SNGIGPAGVRALAA 238

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
            T + +L IS +++ D G   L     LT L+   C +      +L+   +L  L+L+  
Sbjct: 239 NTTITTLDISNNEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATSTTLTSLDLSYN 298

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            +  +G E   +  +L+ L+   NE+       L   T L  LNL S  IG+ G      
Sbjct: 299 AIEAEGVEALGRNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFG- 357

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
             N   +EL+ +  G   +   +    L +++LS   I D + + LA   +L +LN+ + 
Sbjct: 358 -ANTTLVELNLSNNGIERVPEWADNGKLTTLDLSNNQIGDTAAQVLAASRTLTTLNVGSN 416

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
           +I DTG  AL   T LT L++   RI  +G   L     L  LE
Sbjct: 417 RIGDTGACALAGNTTLTTLNVSLNRIGKAGMLALAANTTLEKLE 460



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 128/287 (44%), Gaps = 8/287 (2%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           ITA G+     L  L +LD+  C         L G   L +LN++  N I D+ +   + 
Sbjct: 157 ITAVGIAHLLALP-LDRLDVSGCELNADSARLLAGHPTLTTLNLR-RNAIDDAGVAAFAR 214

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
              L +L +S + +  +G+  L     +T L++    +      +L++  +L  L+ + C
Sbjct: 215 NKKLTTLNVSSNGIGPAGVRALAANTTITTLDISNNEIGDEGALALASNTTLTRLDASDC 274

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNL 199
            +  +G +  +   +L  L+L +N I  E +  L   T L +L+  +CG  +G      L
Sbjct: 275 GIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALGRNTTLRTLH--ACGNELGHREAELL 332

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
                L  L LS   +G++G R     T L  +NLS  GI    + + A    L +L+L 
Sbjct: 333 AANTTLTVLNLSSNAIGNAGARAFGANTTLVELNLSNNGIE--RVPEWADNGKLTTLDLS 390

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
             QI DT    L +   LT L++   RI D+GA  L     L +L +
Sbjct: 391 NNQIGDTAAQVLAASRTLTTLNVGSNRIGDTGACALAGNTTLTTLNV 437



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 21/268 (7%)

Query: 106 LQKLTLLNLEGC-----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160
           +Q+LT+ N +G      P     L  L+ +G     +L R               SL+ L
Sbjct: 101 IQQLTITNRKGSGGIPSPDDYPALRKLTLVGPFTDADLQRLP------------PSLREL 148

Query: 161 NLGFNE--ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           +L   E  IT   + HL  L  L+ L++  C +  +    L G   L  L L    +  +
Sbjct: 149 DLSLCEGPITAVGIAHLLALP-LDRLDVSGCELNADSARLLAGHPTLTTLNLRRNAIDDA 207

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
           G+   +    L ++N+S  GI    +R LA  +++ +L++   +I D G  AL S T LT
Sbjct: 208 GVAAFARNKKLTTLNVSSNGIGPAGVRALAANTTITTLDISNNEIGDEGALALASNTTLT 267

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
            LD     I   G   L     L SL++    +   GV+ +   ++L  L+   N  L  
Sbjct: 268 RLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALGRNTTLRTLHACGN-ELGH 326

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLR 366
           +  EL++  T L  LN+S++ I +AG R
Sbjct: 327 REAELLAANTTLTVLNLSSNAIGNAGAR 354


>gi|255524523|ref|ZP_05391478.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
 gi|296186022|ref|ZP_06854427.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
 gi|255511819|gb|EET88104.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
 gi|296049290|gb|EFG88719.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
          Length = 683

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 165/336 (49%), Gaps = 53/336 (15%)

Query: 25  QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 84
           Q +     L NL  LDL + ++I   +  LK L KL++L     N    SD+ PL  LT+
Sbjct: 371 QDISGIENLTNLQFLDLSQ-SKI-SDISELKNLTKLQTL---LLNDNEISDISPLQNLTD 425

Query: 85  LKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 143
           LK L +  ++++D + + YL  L +L L N     ++      L  L +L  L L++ Q+
Sbjct: 426 LKQLDLEENRISDITPLQYLSDLNELYLKNNRITNISK-----LEWLTNLKILYLSQNQI 480

Query: 144 SD-DGCEKFSKIGSLKVLNL-------GFNEITDECL--------------VHLKGLTNL 181
           SD    +++    + K  N+             DE L              +++  + N+
Sbjct: 481 SDYSPVKRYYDNLTDKDFNMTNSTDSKDIVTFKDENLEKAVRDKINKETGDIYITDVKNI 540

Query: 182 ESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
            SLN     I D  G+ NLT L   + L+L + QV  S +  LS LTNLE++NLS+   S
Sbjct: 541 VSLNASHKNIKDISGIENLTSL---QTLDLGNNQV--SDISVLSSLTNLETLNLSYNEFS 595

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           D  + KL GLS L++LNL++ +I D  ++A+ +L  L  L+L   +I++     L+   N
Sbjct: 596 D--ISKLKGLSKLETLNLNSNEIGD--ISAIQTLNNLKSLNLSNCKISNINP--LKGLNN 649

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           L++L +    ++D+  + +KD  S        NCN+
Sbjct: 650 LKTLWLNNNEMSDSDKEALKDALS--------NCNI 677



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 170/363 (46%), Gaps = 48/363 (13%)

Query: 35  NLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITD--SDMKPLSGLTNLKSLQIS 91
           ++ K D+E+   +     N++ +  +E+L N+++ +      SD+  L  LT L++L ++
Sbjct: 351 DIYKSDVEKIVSLQPYHENIQDISGIENLTNLQFLDLSQSKISDISELKNLTKLQTLLLN 410

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEK 150
            ++++D  I+ L+ L  L  L+LE   ++    L  LS L  L YL  NR         K
Sbjct: 411 DNEISD--ISPLQNLTDLKQLDLEENRISDITPLQYLSDLNEL-YLKNNRIT----NISK 463

Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
              + +LK+L L  N+I+D   V  +   NL   + +     D   +      NL+   +
Sbjct: 464 LEWLTNLKILYLSQNQISDYSPVK-RYYDNLTDKDFNMTNSTDSKDIVTFKDENLEK-AV 521

Query: 211 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 270
            D     +G  +++ + N+ S+N S   I D  +  +  L+SL++L+L   Q++D  ++ 
Sbjct: 522 RDKINKETGDIYITDVKNIVSLNASHKNIKD--ISGIENLTSLQTLDLGNNQVSD--ISV 577

Query: 271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
           L+SLT L  L+L     +D     +   K L  LE       + G     D+S++  LN 
Sbjct: 578 LSSLTNLETLNLSYNEFSD-----ISKLKGLSKLETLNLNSNEIG-----DISAIQTLN- 626

Query: 331 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
                              L SLN+SN +I  + +  LK L NL++L L + +++ +D +
Sbjct: 627 ------------------NLKSLNLSNCKI--SNINPLKGLNNLKTLWLNNNEMSDSDKE 666

Query: 391 RLQ 393
            L+
Sbjct: 667 ALK 669



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 147/313 (46%), Gaps = 47/313 (15%)

Query: 98  SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
           SG  Y   ++K+  ++L+        +  +  L +L +L+L++ ++SD    +   +  L
Sbjct: 349 SGDIYKSDVEKI--VSLQPYHENIQDISGIENLTNLQFLDLSQSKISD--ISELKNLTKL 404

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
           + L L  NEI+D  +  L+ LT+L+ L+L+   I D  +  L  L +L  L L + ++  
Sbjct: 405 QTLLLNDNEISD--ISPLQNLTDLKQLDLEENRISD--ITPLQYLSDLNELYLKNNRI-- 458

Query: 218 SGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLKSLNL----DARQIT-------- 264
           + +  L  LTNL+ + LS   ISD S +++     + K  N+    D++ I         
Sbjct: 459 TNISKLEWLTNLKILYLSQNQISDYSPVKRYYDNLTDKDFNMTNSTDSKDIVTFKDENLE 518

Query: 265 ---------DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
                    +TG   +T +  +  L+     I D     +   +NL SL+       D G
Sbjct: 519 KAVRDKINKETGDIYITDVKNIVSLNASHKNIKD-----ISGIENLTSLQTL-----DLG 568

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELIS---GLTGLVSLNVSNSRITSAGLRHLKPLK 372
              + D+S L+ L   +  NL+      IS   GL+ L +LN++++ I    +  ++ L 
Sbjct: 569 NNQVSDISVLSSLTNLETLNLSYNEFSDISKLKGLSKLETLNLNSNEI--GDISAIQTLN 626

Query: 373 NLRSLTLESCKVT 385
           NL+SL L +CK++
Sbjct: 627 NLKSLNLSNCKIS 639



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 141/316 (44%), Gaps = 75/316 (23%)

Query: 74  SDMKPLSG----------------------LTNLKSLQISCSKVTDSGIAYLKGLQKLTL 111
           SD+  L G                       T +++L ++ +++TD     +  LQK  L
Sbjct: 214 SDINELRGLNNLYSLNLNNNEISDINELKYFTYMRTLLLNNNEITD-----ISPLQK--L 266

Query: 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL--KVLNLGFNEI-- 167
           +NL+   +    +++++AL  L   NLN   L  +    +S   S   K+LN  F+ I  
Sbjct: 267 INLQQLSLKNNRINNINALRGL--TNLNLLYLGQNEILDYSPTRSYYAKILNKDFDLIDS 324

Query: 168 TDECLVHLKGLTNLE-----SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
            D+ +V  K + NLE      +N  S  I    +  +  L           Q     ++ 
Sbjct: 325 NDDNIVTFKDI-NLEKAVRSEINKPSGDIYKSDVEKIVSL-----------QPYHENIQD 372

Query: 223 LSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
           +SG   LTNL+ ++LS + ISD  + +L  L+ L++L L+  +I+D  ++ L +LT L  
Sbjct: 373 ISGIENLTNLQFLDLSQSKISD--ISELKNLTKLQTLLLNDNEISD--ISPLQNLTDLKQ 428

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC----- 334
           LDL   RI+D     L+   +L  L +    +T   +  ++ L++L +L LSQN      
Sbjct: 429 LDLEENRISDITP--LQYLSDLNELYLKNNRIT--NISKLEWLTNLKILYLSQNQISDYS 484

Query: 335 -------NLTDKTLEL 343
                  NLTDK   +
Sbjct: 485 PVKRYYDNLTDKDFNM 500


>gi|283781267|ref|YP_003372022.1| hypothetical protein Psta_3501 [Pirellula staleyi DSM 6068]
 gi|283439720|gb|ADB18162.1| hypothetical protein Psta_3501 [Pirellula staleyi DSM 6068]
          Length = 436

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 135/308 (43%), Gaps = 39/308 (12%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR----IHGGLVNLKGLMKLES 62
            LS+L  LS    N IT +G++       L    +   +R    ++G        +K  S
Sbjct: 112 ALSDLQFLSIYETN-ITNEGLQVLRKFSKLRSFSVAPVSRYEKSMYGAPQWSYPFLKQRS 170

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
              K    IT   ++PL  +  ++SLQ+  +++  S +A L+   KL  + L    +T+ 
Sbjct: 171 DRPK----ITVQGLEPLRNIATIESLQLIDAQLAPSDLAILQSWPKLGSIALSTT-MTSE 225

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            +  L+A   +  L L   +++ D      +  SLK L L   +++ + L  L  L +LE
Sbjct: 226 AVQHLAACKRVSNLTLGYREITADEIRALGEWESLKKLMLLHAKLSSDALAALASLESLE 285

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L+L+ C + D+ L +L     L  L L   ++   GLRHL     L+ I L F  IS+ 
Sbjct: 286 QLDLEECNLTDDDLAHLKLPAKLTILGLKRNEIDGPGLRHLVPF-QLKQIGLEFNNISNA 344

Query: 243 SLRKLAGLSSLKSLNLDA----------------------------RQITDTGLAALTSL 274
           +L +LA L +L++LNL                              +Q+TD  LA +  +
Sbjct: 345 TLGELAQLRTLETLNLSYCRQIDNQGIESGVLQRMTHVRQLGLRGLKQVTDASLAEIVKM 404

Query: 275 TGLTHLDL 282
           T L H+ +
Sbjct: 405 THLKHITI 412



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 147/348 (42%), Gaps = 53/348 (15%)

Query: 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE---KFSKIGSLKVLNLGF 164
           +L  L L G  V+        AL  L +L++    ++++G +   KFSK+ S  V  +  
Sbjct: 91  QLAHLGLWGEGVSDEVFARSVALSDLQFLSIYETNITNEGLQVLRKFSKLRSFSVAPVSR 150

Query: 165 NE----------------------ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
            E                      IT + L  L+ +  +ESL L    +    L  L   
Sbjct: 151 YEKSMYGAPQWSYPFLKQRSDRPKITVQGLEPLRNIATIESLQLIDAQLAPSDLAILQSW 210

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
             L  + LS T + S  ++HL+    + ++ L +  I+   +R L    SLK L L   +
Sbjct: 211 PKLGSIALSTT-MTSEAVQHLAACKRVSNLTLGYREITADEIRALGEWESLKKLMLLHAK 269

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR-----NFKNLRSLEICGGGL------ 311
           ++   LAAL SL  L  LDL    +TD   A+L+         L+  EI G GL      
Sbjct: 270 LSSDALAALASLESLEQLDLEECNLTDDDLAHLKLPAKLTILGLKRNEIDGPGLRHLVPF 329

Query: 312 ------------TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE--LISGLTGLVSLNVSN 357
                       ++A +  +  L +L  LNLS    + ++ +E  ++  +T +  L +  
Sbjct: 330 QLKQIGLEFNNISNATLGELAQLRTLETLNLSYCRQIDNQGIESGVLQRMTHVRQLGLRG 389

Query: 358 -SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
             ++T A L  +  + +L+ +T+    ++   + ++++  +P  V F+
Sbjct: 390 LKQVTDASLAEIVKMTHLKHITIRETGISWESVDKMKA-AMPETVVFK 436


>gi|290998998|ref|XP_002682067.1| predicted protein [Naegleria gruberi]
 gi|284095693|gb|EFC49323.1| predicted protein [Naegleria gruberi]
          Length = 427

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 145/330 (43%), Gaps = 40/330 (12%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLES 62
           +S L  L SL    +  + +  +     +  L +LD+ R  C R +GG   LK L  L+ 
Sbjct: 124 ISQLKQLKSLYLYAD--VDSNALNGVFEMTQLTELDINRKQCHRWNGGFKKLKQLTNLKK 181

Query: 63  LNIKWCNCITDSDM-KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           L    C CI   D+ + +S L  L  L I+ + +   G   +  L+ LT+L++  C V  
Sbjct: 182 LCAVGC-CIDYEDVFQSISQLDQLTELHIASNSLYSDGAKLIGKLKNLTILDISYCGVCI 240

Query: 122 AC---LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT--DECLVHLK 176
                L+S+S L +L YL+     L   G    SK+ +L  L +  N I+  DE +V LK
Sbjct: 241 PHNEGLESISELINLTYLDCANNGLRSIG--PISKLENLTFLRVSLNRISSLDESIVKLK 298

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNL+                           +    +        S +  L S+ +  
Sbjct: 299 KLTNLD---------------------------VGYNSISDQSAEVFSSMKQLTSLFIQE 331

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I D S + ++ +S LK+L +D+  ++D G  +++++  LT LD+    I D GA  L 
Sbjct: 332 NNIGDKSAKSISEISQLKNLCIDSNIVSDKGAKSISTMENLTELDIRNNDIGDDGAKSLT 391

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
               L++L I    +++ G+  +K L   T
Sbjct: 392 RLTKLKTLRIAQNNISEEGMMTLKKLKYST 421



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 144/317 (45%), Gaps = 25/317 (7%)

Query: 30  FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG---LTNLK 86
           FA +  L KLD+        G+  +  L +L+SL +       D D   L+G   +T L 
Sbjct: 100 FAKMSQLTKLDISGLKIGEDGIKAISQLKQLKSLYL-----YADVDSNALNGVFEMTQLT 154

Query: 87  SLQI---SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQ 142
            L I    C +  + G   LK L  L  L   GC +       S+S L  L  L++    
Sbjct: 155 ELDINRKQCHR-WNGGFKKLKQLTNLKKLCAVGCCIDYEDVFQSISQLDQLTELHIASNS 213

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL-ESLNLDSCGIGDEGLVNL-- 199
           L  DG +   K+ +L +L++ +  +   C+ H +GL ++ E +NL      + GL ++  
Sbjct: 214 LYSDGAKLIGKLKNLTILDISYCGV---CIPHNEGLESISELINLTYLDCANNGLRSIGP 270

Query: 200 -TGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
            + L NL  L +S  ++ S    +  L  LTNL+   + +  ISD S    + +  L SL
Sbjct: 271 ISKLENLTFLRVSLNRISSLDESIVKLKKLTNLD---VGYNSISDQSAEVFSSMKQLTSL 327

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
            +    I D    +++ ++ L +L +    ++D GA  +   +NL  L+I    + D G 
Sbjct: 328 FIQENNIGDKSAKSISEISQLKNLCIDSNIVSDKGAKSISTMENLTELDIRNNDIGDDGA 387

Query: 317 KHIKDLSSLTLLNLSQN 333
           K +  L+ L  L ++QN
Sbjct: 388 KSLTRLTKLKTLRIAQN 404



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 141/305 (46%), Gaps = 31/305 (10%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
            + ++ L  L IS  K+ + GI  +  L++L  L L    V +  L+ +  +  L  L++
Sbjct: 100 FAKMSQLTKLDISGLKIGEDGIKAISQLKQLKSLYLYA-DVDSNALNGVFEMTQLTELDI 158

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           NR Q     C ++         N GF +        LK LTNL+ L    C I  E +  
Sbjct: 159 NRKQ-----CHRW---------NGGFKK--------LKQLTNLKKLCAVGCCIDYEDVFQ 196

Query: 199 -LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
            ++ L  L  L ++   + S G + +  L NL  +++S+ G+       L  +S L  +N
Sbjct: 197 SISQLDQLTELHIASNSLYSDGAKLIGKLKNLTILDISYCGVCIPHNEGLESISEL--IN 254

Query: 258 LDARQITDTGLAAL---TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
           L      + GL ++   + L  LT L +   RI+    + ++  K L +L++    ++D 
Sbjct: 255 LTYLDCANNGLRSIGPISKLENLTFLRVSLNRISSLDESIVK-LKKLTNLDVGYNSISDQ 313

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
             +    +  LT L + +N N+ DK+ + IS ++ L +L + ++ ++  G + +  ++NL
Sbjct: 314 SAEVFSSMKQLTSLFIQEN-NIGDKSAKSISEISQLKNLCIDSNIVSDKGAKSISTMENL 372

Query: 375 RSLTL 379
             L +
Sbjct: 373 TELDI 377


>gi|414878156|tpg|DAA55287.1| TPA: hypothetical protein ZEAMMB73_170021 [Zea mays]
          Length = 663

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 180/378 (47%), Gaps = 59/378 (15%)

Query: 48  HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL-- 103
           +G L ++  L +LE L +  C+CI D  ++ LS G  +L+S+ +S C  VT  G+A L  
Sbjct: 225 NGSLRSISSLERLEELAMVCCSCIDDEGLELLSKGSDSLQSVDVSRCDHVTSHGLASLID 284

Query: 104 --KGLQKLTLLNLEGCPVTAACLDSLSALGSLFY------------LNLNRCQLSD---- 145
               LQKL           AA  D L  +G  F             L L+  ++SD    
Sbjct: 285 GRNFLQKLY----------AA--DCLHEIGQRFVSKLATLKETLTTLKLDGLEVSDSLLE 332

Query: 146 ---DGCEKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVN 198
              + C K  +IG  K   V + G + +   C       ++L +++L  C +  +  L +
Sbjct: 333 AIGESCNKLVEIGLSKCSGVTDEGISSLVARC-------SDLRTIDLTCCNLSTNNALDS 385

Query: 199 LTGLCN-LKCLEL-SDTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSSLKS 255
           + G C  L+CL L S + +   GL+ ++    NL+ I+L+  G+ D +L  LA  S L+ 
Sbjct: 386 IAGNCKMLECLRLESCSLINEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRV 445

Query: 256 LNLD-ARQITDTGLAALTSLTG-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GG 310
           L L     I+D G+A ++S  G L  LDL+  + ITD G A L N  K ++ L +C    
Sbjct: 446 LKLGLCSSISDKGIAFISSNCGKLVELDLYRCSSITDDGLAALANGCKRIKLLNLCYCNK 505

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHL 368
           +TD G+ H+  L  LT L L     +T   +  ++ G   L+ L++     +  AGL  L
Sbjct: 506 ITDTGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIELDLKRCYSVDDAGLWAL 565

Query: 369 KPLK-NLRSLTLESCKVT 385
                NLR LT+  C+VT
Sbjct: 566 ARYALNLRQLTISYCQVT 583



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 162/379 (42%), Gaps = 72/379 (18%)

Query: 11  LTSLSFRRNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKW 67
           L  L   +  A+T  G+ K   G   L KL L+ C  I    ++L  K   +L SLNI +
Sbjct: 161 LRELRLDKCLAVTDMGLAKVAVGCPRLEKLSLKWCREISDIGIDLLAKKCPELRSLNISY 220

Query: 68  CNCITDSDMKPLSGLTNLKSL-QISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VT---- 120
              + +  ++ +S L  L+ L  + CS + D G+  L KG   L  +++  C  VT    
Sbjct: 221 LK-VGNGSLRSISSLERLEELAMVCCSCIDDEGLELLSKGSDSLQSVDVSRCDHVTSHGL 279

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK----VLNLGFNEITDECLVHL- 175
           A+ +D  + L  L+  +     L + G    SK+ +LK     L L   E++D  L  + 
Sbjct: 280 ASLIDGRNFLQKLYAADC----LHEIGQRFVSKLATLKETLTTLKLDGLEVSDSLLEAIG 335

Query: 176 KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +    L  + L  C G+ DEG+ +L   C                       ++L +I+L
Sbjct: 336 ESCNKLVEIGLSKCSGVTDEGISSLVARC-----------------------SDLRTIDL 372

Query: 235 SFTGIS-DGSLRKLAG-LSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSG 291
           +   +S + +L  +AG    L+ L L++   I + GL  + +                  
Sbjct: 373 TCCNLSTNNALDSIAGNCKMLECLRLESCSLINEKGLKRIATCC---------------- 416

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG-L 350
                   NL+ +++   G+ DA ++H+   S L +L L    +++DK +  IS   G L
Sbjct: 417 -------PNLKEIDLTDCGVDDAALEHLAKCSELRVLKLGLCSSISDKGIAFISSNCGKL 469

Query: 351 VSLNVSN-SRITSAGLRHL 368
           V L++   S IT  GL  L
Sbjct: 470 VELDLYRCSSITDDGLAAL 488



 Score = 42.0 bits (97), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 9/150 (6%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAF--AGLINLVKLDLERCTRI-HGGLVNLK-GLM 58
           E+L+  S L  L     ++I+ +G+ AF  +    LV+LDL RC+ I   GL  L  G  
Sbjct: 435 EHLAKCSELRVLKLGLCSSISDKGI-AFISSNCGKLVELDLYRCSSITDDGLAALANGCK 493

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNLEG 116
           +++ LN+ +CN ITD+ +  L  L  L +L++ C  ++T  GI+ +  G + L  L+L+ 
Sbjct: 494 RIKLLNLCYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIELDLKR 553

Query: 117 C-PVTAACLDSLSALG-SLFYLNLNRCQLS 144
           C  V  A L +L+    +L  L ++ CQ++
Sbjct: 554 CYSVDDAGLWALARYALNLRQLTISYCQVT 583


>gi|158299381|ref|XP_319486.4| AGAP010289-PA [Anopheles gambiae str. PEST]
 gi|157014337|gb|EAA14603.5| AGAP010289-PA [Anopheles gambiae str. PEST]
          Length = 381

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 84/244 (34%), Positives = 125/244 (51%), Gaps = 26/244 (10%)

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIG----------SLKVLNLGF-NEITDECLVH 174
           S +  GSL    + R Q+   GC   + +           +LKVLNL    ++TD  L  
Sbjct: 124 SPTLFGSLVKRGIKRVQV---GCYNITDMAIGHAFAADFPNLKVLNLSLCKQVTDSSLGR 180

Query: 175 L-KGLTNLESLNLDSCG-IGDEGLVNLT--GLCNLKCLELSDTQ-VGSSGLRHLS-GLTN 228
           + + L N+E L L  C  I + GL   T  G   L+ L L D Q +    LRH++ GLT+
Sbjct: 181 ITQHLKNIEVLELGGCSNITNTGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLTS 240

Query: 229 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FG 284
           L SINLSF   ++D  L+ LA +S L+ LNL A   I+D G+A LT     ++ LD+ F 
Sbjct: 241 LRSINLSFCVSVTDSGLKHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFC 300

Query: 285 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 342
            ++ D    ++ +    LRSL +    +TD G+  I K L  L  LN+ Q   +TD+ LE
Sbjct: 301 DKVADQAMVHISQGLFQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITDRGLE 360

Query: 343 LISG 346
           +++ 
Sbjct: 361 IVAA 364



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 126/241 (52%), Gaps = 37/241 (15%)

Query: 82  LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALG--SLFYL 136
             NLK L +S C +VTDS +  + + L+ + +L L GC  +T   L   +A G  +L YL
Sbjct: 159 FPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSNITNTGLSKETADGTPALEYL 218

Query: 137 NLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIG 192
            L  CQ LSD+     ++ + SL+ +NL F   +TD  L HL  ++ LE LNL +C  I 
Sbjct: 219 GLQDCQRLSDEALRHIAQGLTSLRSINLSFCVSVTDSGLKHLARMSRLEELNLRACDNIS 278

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GL 250
           D G+  LT  CN                       ++ ++++SF   ++D ++  ++ GL
Sbjct: 279 DIGMAYLTEGCN-----------------------SISTLDVSFCDKVADQAMVHISQGL 315

Query: 251 SSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEIC 307
             L+SL+L A QITD GL+ +  SL  L  L++   +RITD G   +     NLR++++ 
Sbjct: 316 FQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITDRGLEIVAAELINLRAIDLY 375

Query: 308 G 308
           G
Sbjct: 376 G 376



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 102/195 (52%), Gaps = 18/195 (9%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLE 61
            L G SN+T+    +    TA G  A      L  L L+ C R+    +    +GL  L 
Sbjct: 192 ELGGCSNITNTGLSKE---TADGTPA------LEYLGLQDCQRLSDEALRHIAQGLTSLR 242

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPV 119
           S+N+ +C  +TDS +K L+ ++ L+ L + +C  ++D G+AYL +G   ++ L++  C  
Sbjct: 243 SINLSFCVSVTDSGLKHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDK 302

Query: 120 TA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGF-NEITDECL-VH 174
            A  A +     L  L  L+L+ CQ++D+G  + +K +  L+ LN+G  + ITD  L + 
Sbjct: 303 VADQAMVHISQGLFQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITDRGLEIV 362

Query: 175 LKGLTNLESLNLDSC 189
              L NL +++L  C
Sbjct: 363 AAELINLRAIDLYGC 377



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 102/199 (51%), Gaps = 18/199 (9%)

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSL-RKLAGLSSLKSLNLDA-RQI 263
           C  ++D  +G +     +   NL+ +NLS    ++D SL R    L +++ L L     I
Sbjct: 143 CYNITDMAIGHA---FAADFPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSNI 199

Query: 264 TDTGLAALTSLTGLTHLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGV 316
           T+TGL+  T+  G   L+  G     R++D    ++ +   +LRS  L  C   +TD+G+
Sbjct: 200 TNTGLSKETA-DGTPALEYLGLQDCQRLSDEALRHIAQGLTSLRSINLSFCVS-VTDSGL 257

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKN 373
           KH+  +S L  LNL    N++D  +  L  G   + +L+VS   ++    + H+ + L  
Sbjct: 258 KHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMVHISQGLFQ 317

Query: 374 LRSLTLESCKVTANDIKRL 392
           LRSL+L +C++T   + R+
Sbjct: 318 LRSLSLSACQITDEGLSRI 336


>gi|290991352|ref|XP_002678299.1| predicted protein [Naegleria gruberi]
 gi|284091911|gb|EFC45555.1| predicted protein [Naegleria gruberi]
          Length = 383

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 167/353 (47%), Gaps = 22/353 (6%)

Query: 12  TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 71
           TSLS+R  +A      ++   LI  V  ++E        LV+   L  L+SL++     I
Sbjct: 29  TSLSYR--DACLIAKFESLEELIGEVGDEME-------ALVDY--LPNLKSLDVGLVQEI 77

Query: 72  TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
              +++ +S L NL +  I  S +    +  +  + +LT LN+ G P+ +  L  +  L 
Sbjct: 78  CYENVEYISELQNLTTFSIRYSNIGRKHLQIIGEMSQLTDLNISGNPINS--LLPIRPLT 135

Query: 132 SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNLDSC 189
            +  L+   C  L DDG         L+ LNL  N IT E C+   +   NL  L+L+  
Sbjct: 136 RITSLSAADCSFLGDDGIYPIVNFKGLQKLNLSSNGITWEGCMFISEKFPNLSHLSLNET 195

Query: 190 GIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKL 247
            I D  +  L+ +  L  L++ ++ ++   G++ +S  LTNL  +N+S   ++D  L   
Sbjct: 196 RICDGAIKRLSKMKQLTYLDVGNNAKITMEGIKLISNNLTNLTHLNISSNNVTDEGLMMA 255

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTG--LTHLDLFGARITDSGAAYL-RNFKNLRSL 304
             L  L+ L +   QITD+G+   +   G  L  L L    IT     YL     NL+ L
Sbjct: 256 CDLPKLQELFVGHNQITDSGINEFSEKIGNKLKILSLSRNNITSLCTQYLCTKLTNLKKL 315

Query: 305 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
            + G  +TD  VK I + +  L  L++S N N+TDK+LE +     L  ++V+
Sbjct: 316 YLAGVSITDEDVKLICQCMKLLIYLDVSWN-NVTDKSLEYVIASESLREVDVN 367


>gi|158336627|ref|YP_001517801.1| internalin A protein [Acaryochloris marina MBIC11017]
 gi|158306868|gb|ABW28485.1| internalin A protein [Acaryochloris marina MBIC11017]
          Length = 627

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 131/442 (29%), Positives = 198/442 (44%), Gaps = 106/442 (23%)

Query: 4   NLSGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLVNLKGLMKL 60
           ++SGL +LT L+    R+NAI       ++ L+NL +L  L    R    L  L+ L  L
Sbjct: 176 DISGLKDLTKLNTLNLRSNAI-----DDYSVLLNLKELRQLTVSVREATDLAFLQDLKDL 230

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             L++ + + I  SD+  L  L  L  L +  +++  S IA L  LQ+LT L+L    ++
Sbjct: 231 THLDLSYNHWI--SDISVLRNLPKLTHLDLGSNQI--SNIAVLLDLQQLTHLSLSSNQIS 286

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
              +  L  L  L  L+++  +++D        +  L  L++  NE++D  +  L+ LT 
Sbjct: 287 DVSV--LQTLQGLERLDVSANEIADIAI--LQNLQGLTHLDISSNEVSDISV--LQDLTT 340

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  LN+ S  I D  +  L GL  L  L++SD Q+  S +  L GL +L S+NLS+  +S
Sbjct: 341 LTQLNVSSNEIIDYSV--LQGLTQLTSLDVSDNQM--SEISDLQGLHSLTSLNLSYNQLS 396

Query: 241 DGS----LRKLAGLS----------------SLKSLNLDARQITDTGLAALTSLTGLTHL 280
           D S    L++LA L+                 L +LNL   QITD  L+ L  L GL  L
Sbjct: 397 DISVLQDLKQLATLNLSYNPVSDIAVLQNFKDLTTLNLSFTQITD--LSHLQDLKGLISL 454

Query: 281 DLFGARITD--------------------SGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
           DL   +ITD                    S  A LR  K L SL +    + D  +  ++
Sbjct: 455 DLHSNQITDISALQDLEGLYRLNVSDNQLSDIAALRKLKGLFSLNLSINQILD--IAALQ 512

Query: 321 DLSSLTLLNLSQNCNLTD-----------------------KTLELISGL---------- 347
           DL+ LT LN+S N  L+D                         L+ I GL          
Sbjct: 513 DLTRLTSLNVSHN-QLSDISVLQGLTRLNSLDLGANQIADISVLQNIPGLFSLDLRFSDV 571

Query: 348 ------TGLVSLNVSNSRITSA 363
                  GL SLN+S+++I+S 
Sbjct: 572 SVFQDFKGLTSLNLSSNQISSV 593



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 178/361 (49%), Gaps = 54/361 (14%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I   ++ P + L  L ++ +S   VT    +YL+    LT + L+   ++      LS L
Sbjct: 84  IVSPEIVPFASLPGLSTIALSGQDVT--AASYLQPTTNLTTVYLKTTNISDYSF--LSDL 139

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            +L +L+L+  Q++D        +  L  L L  N+I D  +  LK LT L +LNL S  
Sbjct: 140 KNLTHLDLSNNQIAD--LSFIQDLKQLTSLGLASNKIVD--ISGLKDLTKLNTLNLRSNA 195

Query: 191 IGDEGLVNLTGLCNLKCL-ELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLA 248
           I D  +     L NLK L +L+ +   ++ L  L  L +L  ++LS+   ISD S+  L 
Sbjct: 196 IDDYSV-----LLNLKELRQLTVSVREATDLAFLQDLKDLTHLDLSYNHWISDISV--LR 248

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD------------------- 289
            L  L  L+L + QI+   +A L  L  LTHL L   +I+D                   
Sbjct: 249 NLPKLTHLDLGSNQIS--NIAVLLDLQQLTHLSLSSNQISDVSVLQTLQGLERLDVSANE 306

Query: 290 -SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
            +  A L+N + L  L+I    ++D  V  ++DL++LT LN+S N  + D +  ++ GLT
Sbjct: 307 IADIAILQNLQGLTHLDISSNEVSDISV--LQDLTTLTQLNVSSN-EIIDYS--VLQGLT 361

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL----VSFR 404
            L SL+VS+++++   +  L+ L +L SL L   +++  DI  LQ  DL  L    +S+ 
Sbjct: 362 QLTSLDVSDNQMSE--ISDLQGLHSLTSLNLSYNQLS--DISVLQ--DLKQLATLNLSYN 415

Query: 405 P 405
           P
Sbjct: 416 P 416



 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 105/239 (43%), Gaps = 33/239 (13%)

Query: 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
           FN+  D+   HL+   N  +LN +   +G    ++L G+   + ++ S  Q       HL
Sbjct: 26  FNQSLDDTYHHLQLQPNAYALNDEHQIVG----LSLQGVDGHELVDASIEQYP-----HL 76

Query: 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
           S L            I    +   A L  L ++ L  + +T    + L   T LT + L 
Sbjct: 77  SALY--------LFDIVSPEIVPFASLPGLSTIALSGQDVT--AASYLQPTTNLTTVYLK 126

Query: 284 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
              I+D   ++L + KNL  L++    + D  +  I+DL  LT L L+ N     K ++ 
Sbjct: 127 TTNISD--YSFLSDLKNLTHLDLSNNQIAD--LSFIQDLKQLTSLGLASN-----KIVD- 176

Query: 344 ISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 400
           ISGL  L  LN  N R  +      L  LK LR LT+   + T  D+  LQ  +DL +L
Sbjct: 177 ISGLKDLTKLNTLNLRSNAIDDYSVLLNLKELRQLTVSVREAT--DLAFLQDLKDLTHL 233


>gi|290990752|ref|XP_002678000.1| predicted protein [Naegleria gruberi]
 gi|284091610|gb|EFC45256.1| predicted protein [Naegleria gruberi]
          Length = 369

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 2/239 (0%)

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           +S L  L YL++ +  +   G +  SK+ +LK L +  N I     + +  +  L SL +
Sbjct: 130 ISKLKELTYLDIGKNSVGRKGAKYISKMKNLKTLQIPLNNIGPNGAISISKMKQLTSLVI 189

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLR 245
               I  EG   +  + NLK L++S    G  G+R LS GL NL S+++S   I+    +
Sbjct: 190 CWNMIDLEGFEAIARMNNLKYLKISGYYNGPEGMRLLSSGLVNLTSLDVSRNEINPEGAK 249

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
            L  + +L  L      +   G+  ++ L  LT LD+    I   GA +++  KNL+ L 
Sbjct: 250 YLGEMKNLIELRATFNIVELGGIKFISQLRNLTLLDVQSNIIESEGARFIKKLKNLKILN 309

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           +    +   G  +I +++ LT L++S N +   +    IS L  LV L++S++ I   G
Sbjct: 310 VSATKMNATGANYIGEMTQLTELDISYN-HFGVEGARAISRLPNLVILDISSNNIGPEG 367



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 1/248 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N + + + K +S L  L  L I  + V   G  Y+  ++ L  L +    +      S+S
Sbjct: 120 NGLKEKEAKLISKLKELTYLDIGKNSVGRKGAKYISKMKNLKTLQIPLNNIGPNGAISIS 179

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLD 187
            +  L  L +    +  +G E  +++ +LK L + G+    +   +   GL NL SL++ 
Sbjct: 180 KMKQLTSLVICWNMIDLEGFEAIARMNNLKYLKISGYYNGPEGMRLLSSGLVNLTSLDVS 239

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
              I  EG   L  + NL  L  +   V   G++ +S L NL  +++    I     R +
Sbjct: 240 RNEINPEGAKYLGEMKNLIELRATFNIVELGGIKFISQLRNLTLLDVQSNIIESEGARFI 299

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
             L +LK LN+ A ++  TG   +  +T LT LD+        GA  +    NL  L+I 
Sbjct: 300 KKLKNLKILNVSATKMNATGANYIGEMTQLTELDISYNHFGVEGARAISRLPNLVILDIS 359

Query: 308 GGGLTDAG 315
              +   G
Sbjct: 360 SNNIGPEG 367



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 122/265 (46%), Gaps = 25/265 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S L  LT L   +N ++  +G K  + + NL  L +        G +++  + +L SL 
Sbjct: 130 ISKLKELTYLDIGKN-SVGRKGAKYISKMKNLKTLQIPLNNIGPNGAISISKMKQLTSLV 188

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I W N I     + ++ + NLK L+IS          Y  G + + LL+           
Sbjct: 189 ICW-NMIDLEGFEAIARMNNLKYLKIS---------GYYNGPEGMRLLS----------- 227

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
              S L +L  L+++R +++ +G +   ++ +L  L   FN +    +  +  L NL  L
Sbjct: 228 ---SGLVNLTSLDVSRNEINPEGAKYLGEMKNLIELRATFNIVELGGIKFISQLRNLTLL 284

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           ++ S  I  EG   +  L NLK L +S T++ ++G  ++  +T L  +++S+        
Sbjct: 285 DVQSNIIESEGARFIKKLKNLKILNVSATKMNATGANYIGEMTQLTELDISYNHFGVEGA 344

Query: 245 RKLAGLSSLKSLNLDARQITDTGLA 269
           R ++ L +L  L++ +  I   G A
Sbjct: 345 RAISRLPNLVILDISSNNIGPEGAA 369



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 103/226 (45%), Gaps = 1/226 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N +     K +S + NLK+LQI  + +  +G   +  +++LT L +    +     ++++
Sbjct: 144 NSVGRKGAKYISKMKNLKTLQIPLNNIGPNGAISISKMKQLTSLVICWNMIDLEGFEAIA 203

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
            + +L YL ++      +G    S  + +L  L++  NEI  E   +L  + NL  L   
Sbjct: 204 RMNNLKYLKISGYYNGPEGMRLLSSGLVNLTSLDVSRNEINPEGAKYLGEMKNLIELRAT 263

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
              +   G+  ++ L NL  L++    + S G R +  L NL+ +N+S T ++      +
Sbjct: 264 FNIVELGGIKFISQLRNLTLLDVQSNIIESEGARFIKKLKNLKILNVSATKMNATGANYI 323

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
             ++ L  L++        G  A++ L  L  LD+    I   GAA
Sbjct: 324 GEMTQLTELDISYNHFGVEGARAISRLPNLVILDISSNNIGPEGAA 369



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%)

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           LS + NL  ++++  G+ +   + ++ L  L  L++    +   G   ++ +  L  L +
Sbjct: 106 LSLMKNLTCLSINENGLKEKEAKLISKLKELTYLDIGKNSVGRKGAKYISKMKNLKTLQI 165

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
               I  +GA  +   K L SL IC   +   G + I  +++L  L +S   N  +    
Sbjct: 166 PLNNIGPNGAISISKMKQLTSLVICWNMIDLEGFEAIARMNNLKYLKISGYYNGPEGMRL 225

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
           L SGL  L SL+VS + I   G ++L  +KNL  L
Sbjct: 226 LSSGLVNLTSLDVSRNEINPEGAKYLGEMKNLIEL 260


>gi|325111037|ref|YP_004272105.1| hypothetical protein Plabr_4512 [Planctomyces brasiliensis DSM
           5305]
 gi|324971305|gb|ADY62083.1| hypothetical protein Plabr_4512 [Planctomyces brasiliensis DSM
           5305]
          Length = 407

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 15/318 (4%)

Query: 87  SLQISCSKV--TDSGIAYLKGLQKLTLL-NLEGCPVTAACLDSLSALGSLFYLNLNRCQL 143
           +L++ C +    D  +  LK  +K T++ +L    ++   LDSL     L  L L   ++
Sbjct: 75  TLELDCRRAHFPDGSLELLKVFEKQTVIVDLSLSNISDDSLDSLKDFNRLEVLILAHTRI 134

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGL 202
           +    ++ S I SL  L+L   E  DE +  L  L  L+ L + +  + ++G   L T +
Sbjct: 135 TGSRLDQLSSITSLHTLDLTAIEFDDESVPSLASLRQLQRLKVPTSKLSEDGFALLCTRM 194

Query: 203 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDA 260
             L+ L+LS  + V +S L HL+ +  L  + +SF   I D ++  LAGL +LK L+L+ 
Sbjct: 195 PFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPLLAGLPALKWLSLEG 254

Query: 261 RQITDTGLAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
             IT    AAL +LT L  L L    F A  T    + LR+ K L +L  C        +
Sbjct: 255 TSITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQL-NLNDCKNI---TSL 310

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
           K ++ +S L  + L +N NLTD  L+ +     L  ++++  RI    +  +  LK L++
Sbjct: 311 KFLRGMSHLEAIGL-KNTNLTDAILKELQYCLQLKYVDLTRCRIGKETISTISQLKLLQT 369

Query: 377 LTLESCKVTANDIKRLQS 394
           ++L   ++ +++I  ++S
Sbjct: 370 ISLSGTQIDSDNIIPIRS 387



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 4/175 (2%)

Query: 48  HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 107
           +  L +L  + +L  L + +   I D  +  L+GL  LK L +  + +T    A L  L 
Sbjct: 210 NSWLTHLAKMPRLNVLGVSFAKNIDDDAIPLLAGLPALKWLSLEGTSITGMFPAALGNLT 269

Query: 108 KLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFN 165
            L  L+L  C   A   L+SLS L SL  LNLN C+  +    KF + +  L+ + L   
Sbjct: 270 NLDTLSLAHCTFNAPQTLESLSKLRSLKQLNLNDCK--NITSLKFLRGMSHLEAIGLKNT 327

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
            +TD  L  L+    L+ ++L  C IG E +  ++ L  L+ + LS TQ+ S  +
Sbjct: 328 NLTDAILKELQYCLQLKYVDLTRCRIGKETISTISQLKLLQTISLSGTQIDSDNI 382



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 140/336 (41%), Gaps = 30/336 (8%)

Query: 15  SFRRNNAITAQGMKAFAGLI---NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 71
           S R +  IT + + A A      + ++LD  R     G L  LK   K   +     + I
Sbjct: 51  SIRLSGLITQERIDAIAESYRDASTLELDCRRAHFPDGSLELLKVFEKQTVIVDLSLSNI 110

Query: 72  TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
           +D  +  L     L+ L ++ +++T S +  L  +  L  L+L         + SL++L 
Sbjct: 111 SDDSLDSLKDFNRLEVLILAHTRITGSRLDQLSSITSLHTLDLTAIEFDDESVPSLASLR 170

Query: 132 SLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLD-S 188
            L  L +   +LS+DG     +++  L+ L+L G   + +  L HL  +  L  L +  +
Sbjct: 171 QLQRLKVPTSKLSEDGFALLCTRMPFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFA 230

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG------ 242
             I D+ +  L GL  LK L L  T +       L  LTNL++++L+    +        
Sbjct: 231 KNIDDDAIPLLAGLPALKWLSLEGTSITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESL 290

Query: 243 ------------------SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
                             SL+ L G+S L+++ L    +TD  L  L     L ++DL  
Sbjct: 291 SKLRSLKQLNLNDCKNITSLKFLRGMSHLEAIGLKNTNLTDAILKELQYCLQLKYVDLTR 350

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
            RI     + +   K L+++ + G  +    +  I+
Sbjct: 351 CRIGKETISTISQLKLLQTISLSGTQIDSDNIIPIR 386



 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 7/170 (4%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWC 68
           N+  +SF +N  I    +   AGL  L  L LE  T I G     L  L  L++L++  C
Sbjct: 223 NVLGVSFAKN--IDDDAIPLLAGLPALKWLSLE-GTSITGMFPAALGNLTNLDTLSLAHC 279

Query: 69  NCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
                  ++ LS L +LK L ++ C  +T   + +L+G+  L  + L+   +T A L  L
Sbjct: 280 TFNAPQTLESLSKLRSLKQLNLNDCKNIT--SLKFLRGMSHLEAIGLKNTNLTDAILKEL 337

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 177
                L Y++L RC++  +     S++  L+ ++L   +I  + ++ ++ 
Sbjct: 338 QYCLQLKYVDLTRCRIGKETISTISQLKLLQTISLSGTQIDSDNIIPIRS 387


>gi|125536975|gb|EAY83463.1| hypothetical protein OsI_38675 [Oryza sativa Indica Group]
          Length = 702

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 172/375 (45%), Gaps = 61/375 (16%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQ 107
           L ++  L KLE L +  C+CI D  ++ L  G  +L+S+ +S C  VT  G+A L  G  
Sbjct: 269 LRSISSLEKLEELAMVCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHN 328

Query: 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
            L  LN       AA  DSL  +   F  NL +  L D          +L VL L   E+
Sbjct: 329 FLQKLN-------AA--DSLHEMRQSFLSNLAK--LKD----------TLTVLRLDGLEV 367

Query: 168 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLEL--------------- 210
               L+ + G  NL  + L  C G+ DEG+ +L   C +L+ ++L               
Sbjct: 368 ASSVLLAIGGCNNLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNSLQQCPDSIAE 427

Query: 211 -----------SDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
                      S + +   GL  ++    NL+ I+L+  G++D +LR LA  S L  L L
Sbjct: 428 NCKMVERLRLESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALRPLAKCSELLVLKL 487

Query: 259 D-ARQITDTGLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEICG-GGLTD 313
                I+D GLA ++S  G L  LDL+    ITD G A L N  K ++ L +C    +TD
Sbjct: 488 GLCSSISDKGLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITD 547

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPL 371
            G+ H+  L  LT L L     +T   +  ++ G   L+ +++     +  AGL  L   
Sbjct: 548 TGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRCYSVDDAGLWALARY 607

Query: 372 K-NLRSLTLESCKVT 385
             NLR LT+  C+VT
Sbjct: 608 ALNLRQLTISYCQVT 622



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 65/116 (56%), Gaps = 6/116 (5%)

Query: 35  NLVKLDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 92
            L++LDL RC  I   GL  L  G  K++ LN+ +CN ITD+ +  L  L  L +L++ C
Sbjct: 507 KLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDTGLGHLGSLEELTNLELRC 566

Query: 93  -SKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALG-SLFYLNLNRCQLS 144
             ++T  GI+ +  G + L  ++L+ C  V  A L +L+    +L  L ++ CQ++
Sbjct: 567 LVRITGIGISSVAIGCKNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVT 622


>gi|220932817|ref|YP_002509725.1| hypothetical protein Hore_19830 [Halothermothrix orenii H 168]
 gi|219994127|gb|ACL70730.1| leucine-rich repeat protein [Halothermothrix orenii H 168]
          Length = 531

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 188/389 (48%), Gaps = 71/389 (18%)

Query: 25  QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL---ESLNIKWCNCITDSDMKPLSG 81
           + +   AGL+ L  L L      H  + NL+ L +L   ++LN+ + N I  SD+KPL+ 
Sbjct: 161 EDISPLAGLVKLEYLKLS-----HQKISNLETLTQLPNLKTLNVAY-NSI--SDLKPLTA 212

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL--------------EGCPVTAACLDSL 127
           LT L  L +  + + D  I+ L+GL+KLT LNL              EG  V     + L
Sbjct: 213 LTGLSHLDLEANNIKD--ISPLRGLKKLTYLNLIRNELTGVKHLSSLEGLQVLLLSGNDL 270

Query: 128 SALGSLFYL-NLNRCQLSDD------GCEKFSKIGSLKVLNLGFNEITD-----ECLVHL 175
             + SL  L NL +  +SD+      G ++F     LK LN+  N I D     EC    
Sbjct: 271 RNIASLTRLVNLEKLDISDNNISVAPGLKEFK---GLKELNISGNPIDDINFISEC---- 323

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
                LE L   +C I D  +  L G  +LK L L + ++  + +  L GL  LE ++LS
Sbjct: 324 ---RKLERLLAFNCEIRD--ISPLRGHNSLKELFLHNNRI--TDISPLEGLNTLERLDLS 376

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
              I + S+  ++GL+ LK L+L+   +T   +  L  L  L +L+L   RI  S    L
Sbjct: 377 GNSIENVSV--ISGLNKLKYLDLEGCGLT--AIEFLKDLGSLEYLELENNRI--SQIEPL 430

Query: 296 RNFKNLRSLEICGGGLTDAGVKHIKDLSSL-TLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           +   NL++L +            IKD+S+L  L+NL +  +L D  +E I  LTGL  L 
Sbjct: 431 KKHINLKTLVLDNN--------QIKDISTLGELMNL-KVLSLNDNQIENIDSLTGLNQLE 481

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           V    I+   +R++KPL  L +L++ + K
Sbjct: 482 V--LYISGNRIRNIKPLLKLNNLSVVAIK 508



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 179/393 (45%), Gaps = 78/393 (19%)

Query: 48  HGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLK 104
           H  + ++KGL     LNIK      +  SD+ PL+ LT+L+ L I  + + D S +  LK
Sbjct: 76  HYEINSIKGLEAF--LNIKTLRIGPNYISDLTPLAHLTDLERLYIFENHIEDLSPLGKLK 133

Query: 105 GLQKLTLLNL----EGCP---VTAACLDSLSALGSLF---YLNLNRCQLSDDGCEKFSKI 154
            L++L +  L    +G P    +   ++ +S L  L    YL L+  ++S+   E  +++
Sbjct: 134 ELRELIIRGLPPYKKGLPSGKYSGHYIEDISPLAGLVKLEYLKLSHQKISN--LETLTQL 191

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
            +LK LN+ +N I+D  L  L  LT L  L+L++  I D  +  L GL  L  L L   +
Sbjct: 192 PNLKTLNVAYNSISD--LKPLTALTGLSHLDLEANNIKD--ISPLRGLKKLTYLNLIRNE 247

Query: 215 VGSSGLRHLSGLTNLES-----------------INLSFTGISDGSLRKLAGLSS---LK 254
           +  +G++HLS L  L+                  +NL    ISD ++    GL     LK
Sbjct: 248 L--TGVKHLSSLEGLQVLLLSGNDLRNIASLTRLVNLEKLDISDNNISVAPGLKEFKGLK 305

Query: 255 SLNLDARQITDTGLAA-----------------LTSLTG---LTHLDLFGARITDSGAAY 294
            LN+    I D    +                 ++ L G   L  L L   RITD   + 
Sbjct: 306 ELNISGNPIDDINFISECRKLERLLAFNCEIRDISPLRGHNSLKELFLHNNRITD--ISP 363

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           L     L  L++ G  + +  V  I  L+ L  L+L + C LT   +E +  L  L  L 
Sbjct: 364 LEGLNTLERLDLSGNSIENVSV--ISGLNKLKYLDL-EGCGLT--AIEFLKDLGSLEYLE 418

Query: 355 VSNSRITSAGLRHLKPLK---NLRSLTLESCKV 384
           + N+RI+      ++PLK   NL++L L++ ++
Sbjct: 419 LENNRIS-----QIEPLKKHINLKTLVLDNNQI 446



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 147/304 (48%), Gaps = 50/304 (16%)

Query: 95  VTDSGIAYLKG--LQKLTLLNL---EGCPVTAACLDSLS--ALGSLFYLNLNRCQLSDDG 147
           V D+GI   +   L+K+ + +L   EG PV    +++L+  ++ S  +  +N  +    G
Sbjct: 30  VEDTGIIVFEDEDLKKVVMRSLSKPEG-PVFRPEVENLTEFSIPSFRHYEINSIK----G 84

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
            E F  I +L++   G N I+D  L  L  LT+LE L +    I D  L  L  L  L+ 
Sbjct: 85  LEAFLNIKTLRI---GPNYISD--LTPLAHLTDLERLYIFENHIED--LSPLGKLKELRE 137

Query: 208 LELSDTQVGSSGLR-------------HLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
           L +        GL               L+GL  LE + LS   IS+  L  L  L +LK
Sbjct: 138 LIIRGLPPYKKGLPSGKYSGHYIEDISPLAGLVKLEYLKLSHQKISN--LETLTQLPNLK 195

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
           +LN+    I+D  L  LT+LTGL+HLDL    I D   + LR  K L  L +    LT  
Sbjct: 196 TLNVAYNSISD--LKPLTALTGLSHLDLEANNIKD--ISPLRGLKKLTYLNLIRNELT-- 249

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS---LNVSNSRITSA-GLRHLKP 370
           GVKH+  L  L +L LS N       L  I+ LT LV+   L++S++ I+ A GL+  K 
Sbjct: 250 GVKHLSSLEGLQVLLLSGN------DLRNIASLTRLVNLEKLDISDNNISVAPGLKEFKG 303

Query: 371 LKNL 374
           LK L
Sbjct: 304 LKEL 307



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 111/235 (47%), Gaps = 28/235 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM----KL 60
           L+ L NL  L    NN   A G+K F GL  L          I G  ++    +    KL
Sbjct: 276 LTRLVNLEKLDISDNNISVAPGLKEFKGLKEL---------NISGNPIDDINFISECRKL 326

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           E L    C      D+ PL G  +LK L +  +++TD  I+ L+GL  L  L+L G  + 
Sbjct: 327 ERLLAFNCEI---RDISPLRGHNSLKELFLHNNRITD--ISPLEGLNTLERLDLSGNSIE 381

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
              +  +S L  L YL+L  C L+    E    +GSL+ L L  N I+   +  LK   N
Sbjct: 382 NVSV--ISGLNKLKYLDLEGCGLT--AIEFLKDLGSLEYLELENNRISQ--IEPLKKHIN 435

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
           L++L LD+  I D  +  L  L NLK L L+D Q+    +  L+GL  LE + +S
Sbjct: 436 LKTLVLDNNQIKD--ISTLGELMNLKVLSLNDNQI--ENIDSLTGLNQLEVLYIS 486


>gi|413949465|gb|AFW82114.1| hypothetical protein ZEAMMB73_510951 [Zea mays]
          Length = 606

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 164/363 (45%), Gaps = 32/363 (8%)

Query: 21  AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 79
           ++ ++ +        L  L L  C  I+   V +L G+  L+ L++  C  I+D+ +K +
Sbjct: 84  SVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLSRCKKISDAGIKHI 143

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
             + +L+ L +S +++TD+G+  +  L  L+ L+L G  +T   L SL  L  L +L++ 
Sbjct: 144 VTIESLEKLHLSETELTDNGVMLISSLTNLSFLDLGGILMTDKTLQSLQVLTKLEHLDIW 203

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-CGIGDEGLVN 198
             + +++G         L  LNL    +    +       N+ +  + S C +  E  V 
Sbjct: 204 GSETTNEGASALKSFARLLSLNLALTRVNHLSIPPTTSYLNMSNCEIHSICDVDSEVPVP 263

Query: 199 LTGLC-------------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           L                       +L  L+LS  ++  S L  L  + NLE ++LS+  I
Sbjct: 264 LENFIVSAATFGNIDKVFSSIQASSLIHLDLSSCKL--SNLSFLEKMKNLEHLDLSYNII 321

Query: 240 SDGSLRKLAGL-SSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRN 297
           +DG++  +A + ++L+ L+L    IT   L  L  ++  LT L L   +I DS  AY+  
Sbjct: 322 TDGAIEHIAKIGTNLQYLSLKNTGITSQALCILAGTVPNLTSLSLANTKIDDSALAYIGM 381

Query: 298 FKNLRSLE-----ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL--ELISGLTGL 350
              LR+++     I G   T+   + +  +S+   L   ++ NL D  L  E+I  L   
Sbjct: 382 IPLLRTIDLSQTSIKGFIHTEVNSEKLLSMSAFEHLKYLESLNLEDTPLSAEVIPPLASF 441

Query: 351 VSL 353
            +L
Sbjct: 442 ATL 444



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 8/176 (4%)

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 220
           GF  +  E L +L     L  L L  C  I ++ + +L+G+  LK L+LS   ++  +G+
Sbjct: 81  GFLSVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLSRCKKISDAGI 140

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           +H+  + +LE ++LS T ++D  +  ++ L++L  L+L    +TD  L +L  LT L HL
Sbjct: 141 KHIVTIESLEKLHLSETELTDNGVMLISSLTNLSFLDLGGILMTDKTLQSLQVLTKLEHL 200

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           D++G+  T+ GA+ L++F  L SL +    LT   V H+    + + LN+S NC +
Sbjct: 201 DIWGSETTNEGASALKSFARLLSLNL---ALTR--VNHLSIPPTTSYLNMS-NCEI 250



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 146/387 (37%), Gaps = 104/387 (26%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +LSG++ L  L   R   I+  G+K    + +L KL L        G++ +  L  L  L
Sbjct: 117 SLSGMNTLKELDLSRCKKISDAGIKHIVTIESLEKLHLSETELTDNGVMLISSLTNLSFL 176

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL-------------- 109
           ++     +TD  ++ L  LT L+ L I  S+ T+ G + LK   +L              
Sbjct: 177 DLGGI-LMTDKTLQSLQVLTKLEHLDIWGSETTNEGASALKSFARLLSLNLALTRVNHLS 235

Query: 110 -----TLLNLEGCPVTAAC-------------LDSLSALG------------SLFYLNLN 139
                + LN+  C + + C             + S +  G            SL +L+L+
Sbjct: 236 IPPTTSYLNMSNCEIHSICDVDSEVPVPLENFIVSAATFGNIDKVFSSIQASSLIHLDLS 295

Query: 140 RCQLS----------------------DDGCEKFSKIGS-LKVLNLGFNEITDECLVHLK 176
            C+LS                      D   E  +KIG+ L+ L+L    IT + L  L 
Sbjct: 296 SCKLSNLSFLEKMKNLEHLDLSYNIITDGAIEHIAKIGTNLQYLSLKNTGITSQALCILA 355

Query: 177 G-LTNLESLNLDSCGIGD--------------------------------EGLVNLTGLC 203
           G + NL SL+L +  I D                                E L++++   
Sbjct: 356 GTVPNLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQTSIKGFIHTEVNSEKLLSMSAFE 415

Query: 204 NLKCLE---LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
           +LK LE   L DT + +  +  L+    L+ + L    +SD +L  L+  S+L  L    
Sbjct: 416 HLKYLESLNLEDTPLSAEVIPPLASFATLKYLYLKSDFLSDPALHALSAASNLIHLGFRG 475

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARI 287
             ++  GL        L  LDL G  I
Sbjct: 476 NILSSFGLLQFVPPVTLCVLDLSGCWI 502



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 26/169 (15%)

Query: 228 NLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA 285
           ++E ++LS F  ++   L  L     L+ L L D + I +  + +L+ +  L  LDL   
Sbjct: 73  SVEEVDLSGFLSVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLSRC 132

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           +                        ++DAG+KHI  + SL  L+LS+   LTD  + LIS
Sbjct: 133 K-----------------------KISDAGIKHIVTIESLEKLHLSET-ELTDNGVMLIS 168

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
            LT L  L++    +T   L+ L+ L  L  L +   + T      L+S
Sbjct: 169 SLTNLSFLDLGGILMTDKTLQSLQVLTKLEHLDIWGSETTNEGASALKS 217


>gi|405954703|gb|EKC22070.1| F-box/LRR-repeat protein 14 [Crassostrea gigas]
          Length = 403

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 164/306 (53%), Gaps = 36/306 (11%)

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSALGSLF--------YLNLNRC-QLSDDGCEKFSK-I 154
           G+  +  LNL GC V         ALG  F         LNL+ C Q++D+   + ++ +
Sbjct: 95  GIPNVETLNLSGCFVVTD-----HALGHAFSQDLPCMTVLNLSLCKQITDNSLGRIAQYL 149

Query: 155 GSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTG--------LC 203
            +L+VL LG  + IT+  L+ +  GL  L++LNL SC  I D G+ +L G          
Sbjct: 150 TNLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGHLAGNSPNAAAGTL 209

Query: 204 NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA 260
            ++ L L D Q +    L+HLS GL NL+++NLSF G ++D  ++ L+ + +++ +NL +
Sbjct: 210 EIENLGLQDCQKLTDLSLKHLSCGLVNLKTLNLSFCGSVTDSGVKFLSKMQTMREINLRS 269

Query: 261 -RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 316
              I+D GL  L    + +T LD+ F  ++ D G  +L +   +LR++ +    ++D G+
Sbjct: 270 CDNISDVGLGYLAEGGSRITSLDVSFCDKVGDEGLVHLAQGLFSLRNISLSACNISDEGL 329

Query: 317 KH-IKDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSN-SRITSAGLRHLKPLKN 373
              +  L  +T LN+ Q   +TDK L LI+  L  L S+++   +RIT+ GL  +  L+ 
Sbjct: 330 NRLVNTLQDITTLNIGQCVRITDKGLSLIADHLKNLQSIDLYGCTRITTVGLERIMQLRG 389

Query: 374 LRSLTL 379
           L +L L
Sbjct: 390 LTTLNL 395



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 157/301 (52%), Gaps = 26/301 (8%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 111
           G+  +E+LN+  C  +TD  +       L  +  L +S C ++TD+ +  + + L  L +
Sbjct: 95  GIPNVETLNLSGCFVVTDHALGHAFSQDLPCMTVLNLSLCKQITDNSLGRIAQYLTNLEV 154

Query: 112 LNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKF------SKIGSLKVLNL 162
           L L GC        L     L  L  LNL  C+ +SD G          +  G+L++ NL
Sbjct: 155 LELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGHLAGNSPNAAAGTLEIENL 214

Query: 163 GFNE---ITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVG 216
           G  +   +TD  L HL  GL NL++LNL  CG + D G+  L+ +  ++ + L S   + 
Sbjct: 215 GLQDCQKLTDLSLKHLSCGLVNLKTLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNIS 274

Query: 217 SSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT- 272
             GL +L+ G + + S+++SF   + D  L  LA GL SL++++L A  I+D GL  L  
Sbjct: 275 DVGLGYLAEGGSRITSLDVSFCDKVGDEGLVHLAQGLFSLRNISLSACNISDEGLNRLVN 334

Query: 273 SLTGLTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLN 329
           +L  +T L++    RITD G + + +  KNL+S+++ G   +T  G++ I  L  LT LN
Sbjct: 335 TLQDITTLNIGQCVRITDKGLSLIADHLKNLQSIDLYGCTRITTVGLERIMQLRGLTTLN 394

Query: 330 L 330
           L
Sbjct: 395 L 395



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 115/225 (51%), Gaps = 31/225 (13%)

Query: 7   GLSNLTSLSFRRNNAITAQGM--------KAFAGLINLVKLDLERCTRIHGGLVNLK--- 55
           GL  L +L+ R    I+  G+         A AG + +  L L+ C ++    ++LK   
Sbjct: 174 GLRKLKTLNLRSCRHISDVGIGHLAGNSPNAAAGTLEIENLGLQDCQKLTD--LSLKHLS 231

Query: 56  -GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLL 112
            GL+ L++LN+ +C  +TDS +K LS +  ++ + + SC  ++D G+ YL +G  ++T L
Sbjct: 232 CGLVNLKTLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNISDVGLGYLAEGGSRITSL 291

Query: 113 NLEGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNEIT 168
           ++  C        +     L SL  ++L+ C +SD+G  +  + +  +  LN+G    IT
Sbjct: 292 DVSFCDKVGDEGLVHLAQGLFSLRNISLSACNISDEGLNRLVNTLQDITTLNIGQCVRIT 351

Query: 169 DECLV----HLKGLTNLESLNLDSC----GIGDEGLVNLTGLCNL 205
           D+ L     HLK   NL+S++L  C     +G E ++ L GL  L
Sbjct: 352 DKGLSLIADHLK---NLQSIDLYGCTRITTVGLERIMQLRGLTTL 393



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 34/244 (13%)

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL---------ELSDTQVGSSGLRHLSGLT 227
           G+ N+E+LNL  C +  +  +      +L C+         +++D  +G    R    LT
Sbjct: 95  GIPNVETLNLSGCFVVTDHALGHAFSQDLPCMTVLNLSLCKQITDNSLG----RIAQYLT 150

Query: 228 NLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALT-----SLTGLTH 279
           NLE + L   + I++  L  +A GL  LK+LNL + R I+D G+  L      +  G   
Sbjct: 151 NLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGHLAGNSPNAAAGTLE 210

Query: 280 LDLFG----ARITDSGAAYLR----NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
           ++  G     ++TD    +L     N K L +L  CG  +TD+GVK +  + ++  +NL 
Sbjct: 211 IENLGLQDCQKLTDLSLKHLSCGLVNLKTL-NLSFCGS-VTDSGVKFLSKMQTMREINLR 268

Query: 332 QNCNLTDKTL-ELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAND 388
              N++D  L  L  G + + SL+VS   ++   GL HL + L +LR+++L +C ++   
Sbjct: 269 SCDNISDVGLGYLAEGGSRITSLDVSFCDKVGDEGLVHLAQGLFSLRNISLSACNISDEG 328

Query: 389 IKRL 392
           + RL
Sbjct: 329 LNRL 332


>gi|421898414|ref|ZP_16328780.1| lrr-gala family type III effector protein (gala 2) [Ralstonia
            solanacearum MolK2]
 gi|206589620|emb|CAQ36581.1| lrr-gala family type III effector protein (gala 2) [Ralstonia
            solanacearum MolK2]
          Length = 1051

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 183/391 (46%), Gaps = 13/391 (3%)

Query: 8    LSNLTSL-SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL-----MKLE 61
            L N  +L S R +  ++ + ++A    +    LDL  CT   G  V+  GL     + LE
Sbjct: 622  LQNYPALESLRFHGHLSIEDLRALPPSVR--HLDLSGCT---GSAVSEAGLAVLARLPLE 676

Query: 62   SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            SL++     I D +++ L+  T+L SL +S +++ ++G   L     LT LN+   P+  
Sbjct: 677  SLDLSGTR-IGDREVQALASSTSLTSLNLSGNRIGNAGARALGRNTVLTALNVSANPIGD 735

Query: 122  ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
            A + +L+   SL  L L    + + G    +    L+ L++  N+++++    L     L
Sbjct: 736  AGVQALADSQSLTSLELRGIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTL 795

Query: 182  ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             SL  ++CG+ +     L  + +L+ LE+    +G +G+  ++   +L ++NLS   I+ 
Sbjct: 796  ASLKANACGLTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITL 855

Query: 242  GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
              LR L    +L SL++      D G   L+    LT L L    I  +GA  L   + L
Sbjct: 856  QGLRPLELSRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTL 915

Query: 302  RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
             SL++ G  +     K + +   LT LN+S +C L D+    ++    L SL+VS +R++
Sbjct: 916  ISLDLRGNTIDVDAAKALANTGCLTSLNVS-DCKLDDEAASALAESLTLTSLDVSVNRLS 974

Query: 362  SAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
                R L     L SL +    +  +  + L
Sbjct: 975  GQAARALAGNATLTSLNISHNHIGPDGAQAL 1005



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 147/331 (44%), Gaps = 2/331 (0%)

Query: 3    ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
            + L+  ++LTSL+    N I   G +A      L  L++        G+  L     L S
Sbjct: 691  QALASSTSLTSLNLS-GNRIGNAGARALGRNTVLTALNVSANPIGDAGVQALADSQSLTS 749

Query: 63   LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
            L ++    I ++ +  L+  T L+SL IS + +++   A L   Q L  L    C +T  
Sbjct: 750  LELRGIG-IGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNG 808

Query: 123  CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
                L+ + SL  L +    + D G    ++  SL+ LNL  N IT + L  L+    L 
Sbjct: 809  MAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLT 868

Query: 183  SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            SL++   G GD G + L+    L  L+L    +GS+G + L+    L S++L    I   
Sbjct: 869  SLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTIDVD 928

Query: 243  SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            + + LA    L SLN+   ++ D   +AL     LT LD+   R++   A  L     L 
Sbjct: 929  AAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAGNATLT 988

Query: 303  SLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            SL I    +   G + + +  SLT L+   N
Sbjct: 989  SLNISHNHIGPDGAQALAESPSLTFLDARAN 1019



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 121/288 (42%), Gaps = 2/288 (0%)

Query: 10   NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 69
            +LTSL  R    I   G+ A A    L  LD+            L     L SL    C 
Sbjct: 746  SLTSLELR-GIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACG 804

Query: 70   CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
             +T+   + L+ + +L++L++  + + D+G+  +     L  LNL   P+T   L  L  
Sbjct: 805  -LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLEL 863

Query: 130  LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
              +L  L+++     D G    SK  +L  L LGFN I       L     L SL+L   
Sbjct: 864  SRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGN 923

Query: 190  GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
             I  +    L     L  L +SD ++       L+    L S+++S   +S  + R LAG
Sbjct: 924  TIDVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAG 983

Query: 250  LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
             ++L SLN+    I   G  AL     LT LD     I ++GA  L N
Sbjct: 984  NATLTSLNISHNHIGPDGAQALAESPSLTFLDARANGIGEAGARALEN 1031



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 14/236 (5%)

Query: 1    MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
            M + L+ + +L +L    +N+I   G+ A A   +L  L+L          + L+GL  L
Sbjct: 809  MAQQLARIRSLRTLEVG-SNSIGDTGVLAIARNASLRTLNLSHNP------ITLQGLRPL 861

Query: 61   E------SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
            E      SL++    C  D     LS    L SL++  + +  +G   L   + L  L+L
Sbjct: 862  ELSRTLTSLDVSGIGC-GDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDL 920

Query: 115  EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
             G  +      +L+  G L  LN++ C+L D+     ++  +L  L++  N ++ +    
Sbjct: 921  RGNTIDVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARA 980

Query: 175  LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
            L G   L SLN+    IG +G   L    +L  L+     +G +G R L   T ++
Sbjct: 981  LAGNATLTSLNISHNHIGPDGAQALAESPSLTFLDARANGIGEAGARALENNTRMQ 1036



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 85/180 (47%), Gaps = 19/180 (10%)

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
           E + +L GL  LESLN+    IGD+G   L    +L+ L  ++  +G++G R L+    L
Sbjct: 145 EAIAYLAGLP-LESLNVAGADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVL 203

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------- 282
            S++L+  GI D   R LAG  SL SL +    +TD G  AL     LT LDL       
Sbjct: 204 ASLDLTRNGIGDEGARALAGSRSLTSLAVLNCLVTDVGARALAGNGTLTALDLGNLITET 263

Query: 283 -----------FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
                          IT  GA  L   ++L SL I G    D GV+ +    +LT LN++
Sbjct: 264 GNELEQAGYDRTANEITARGAWALAQNRSLTSLSIQGNLCGDGGVQALARNRTLTSLNVA 323



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 106/263 (40%), Gaps = 13/263 (4%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALG--SLFY 135
           L    NL SLQ+  +      +  LK L   L  L+L  C   A   ++++ L    L  
Sbjct: 102 LHHYPNLTSLQLEGNFT----LQDLKALPATLRHLDLSACTGGAKSFEAIAYLAGLPLES 157

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           LN+    + DDG    +   SL+ LN     I       L     L SL+L   GIGDEG
Sbjct: 158 LNVAGADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVLASLDLTRNGIGDEG 217

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
              L G  +L  L + +  V   G R L+G   L +++L       G+  + AG      
Sbjct: 218 ARALAGSRSLTSLAVLNCLVTDVGARALAGNGTLTALDLGNLITETGNELEQAGY----- 272

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
            +  A +IT  G  AL     LT L + G    D G   L   + L SL +    +T A 
Sbjct: 273 -DRTANEITARGAWALAQNRSLTSLSIQGNLCGDGGVQALARNRTLTSLNVAYTDMTPAS 331

Query: 316 VKHIKDLSSLTLLNLSQNCNLTD 338
              +     LT L++  N  L D
Sbjct: 332 ATELARNPVLTSLSVRWNYGLGD 354


>gi|84043404|ref|XP_951492.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|33348240|gb|AAQ15567.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|62358736|gb|AAX79191.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
          Length = 1394

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 162/375 (43%), Gaps = 61/375 (16%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           KL  L++  CN ITD+   P+S L+ L+ L + SC  +T  GI  L  L +L +L+L G 
Sbjct: 249 KLSKLSVSECNNITDA--TPISQLSALEELNLNSCYHIT-KGIGTLGMLLRLRILDLSGV 305

Query: 118 PVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK-------I 154
           PV   CL  L   GSL  LN++ C QL+D               +GC + ++       +
Sbjct: 306 PVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIGVVWAL 365

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 213
             L+VL++    +++  L  +     L  ++LD+C G GD  L  L+ +  L+ L +   
Sbjct: 366 PKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQKC 423

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL---AA 270
               SG+  L  L  L  +N+    IS      +    SL  LN+++     TGL    A
Sbjct: 424 ADIISGVGSLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESI----TGLIDVEA 479

Query: 271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD----------------- 313
           L ++  L  L L G    D+G   L N   L+ L++ G    +                 
Sbjct: 480 LANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNL 539

Query: 314 ------AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
                   V HI  L +L  LNLS NC   +   E I  L  L    +SN+ IT   + H
Sbjct: 540 SHCWKMTNVSHISSLEALNELNLS-NCFGINAGWEAIEKLQQLHVAILSNTHITDRNISH 598

Query: 368 LKPLKNLRSLTLESC 382
               KNL +L L  C
Sbjct: 599 FSKCKNLVTLDLSFC 613



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 182/414 (43%), Gaps = 56/414 (13%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           ++A A ++ L KL L  CT I  G+  L  L +L+ L++   N   +S ++ L     + 
Sbjct: 477 VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNES-LRSLCLSQTVV 535

Query: 87  SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 145
           SL +S C K+T+  ++++  L+ L  LNL  C    A  +++  L  L    L+   ++D
Sbjct: 536 SLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITD 593

Query: 146 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTG 201
                FSK  +L  L+L F N++ D  +  L  +T LE LNLDSC    +GL     L  
Sbjct: 594 RNISHFSKCKNLVTLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELPR 651

Query: 202 LC--NLKCLELSDTQVGSSG------------------LRHLSGLTNLESINLSFTGISD 241
           LC  N+K ++L D+ + S G                  +  LS L  LE +NL +     
Sbjct: 652 LCVLNIKGVQLEDSVIVSLGNGGSLVKVSLDDCAGFGDVTPLSNLVTLEELNLHYCDKVT 711

Query: 242 GSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTGL 277
             +  L  L  L+ L+L   Q+ +                        T ++++ SLT L
Sbjct: 712 SGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCKKITSISSIASLTAL 771

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
             L++  +    SG         LR   +    + D  ++++ +  SL  LNL+   ++T
Sbjct: 772 EELNIDNSCNVTSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNLAFCKDIT 831

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           D T   +S +T L  LN+        G+  L  L     L+++ C +  +D ++
Sbjct: 832 DVT--ALSKITMLEELNLDCCPNIRKGIETLGTLPKAGILSMKECYMGDSDAQQ 883



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 137/320 (42%), Gaps = 62/320 (19%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           N  IT + +  F+   NLV LDL  C ++                           D+  
Sbjct: 588 NTHITDRNISHFSKCKNLVTLDLSFCNKLL--------------------------DVTA 621

Query: 79  LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           LS +T L+ L + SCS +   G++ L  L +L +LN++G  +  + + SL   GSL  ++
Sbjct: 622 LSNITTLEELNLDSCSNIR-KGLSVLGELPRLCVLNIKGVQLEDSVIVSLGNGGSLVKVS 680

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           L+ C                     GF ++T      L  L  LE LNL  C     G+ 
Sbjct: 681 LDDCA--------------------GFGDVTP-----LSNLVTLEELNLHYCDKVTSGMG 715

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
            L  L  L+ L+L  TQV ++ L ++ +    L S+NLS       S+  +A L++L+ L
Sbjct: 716 TLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCK-KITSISSIASLTALEEL 774

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
           N+D      +G     +L  L    L   RI D    Y+   K+L +L +       A  
Sbjct: 775 NIDNSCNVTSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNL-------AFC 827

Query: 317 KHIKDLSSLTLLNLSQNCNL 336
           K I D+++L+ + + +  NL
Sbjct: 828 KDITDVTALSKITMLEELNL 847



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 171/387 (44%), Gaps = 30/387 (7%)

Query: 22   ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
            ITA+ +   +    LVKL   RC ++    V +  +  LE L ++ C+      +K L+ 
Sbjct: 1020 ITAKDIACLSSCKTLVKLKFFRCEKLSDVTV-VYEIQSLEELIVRSCS----DGLKGLNA 1074

Query: 82   L------TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
            L        L    +  S ++   I   K L +L +   E    T      LS + SL  
Sbjct: 1075 LGTLPRLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMREDLTDTTP----LSNITSLEE 1130

Query: 136  LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
            L+L  C  +  G     K+  LK L+LG ++I++  L ++    ++ SLNLDS       
Sbjct: 1131 LSLRECGDNLGGVGTLEKLPRLKSLDLGLSDISNSTLNYIFLSRSITSLNLDS----SWE 1186

Query: 196  LVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINLSFTGIS---DGSLRKLAG 249
            L +++ + NL  LE   L      +SG + LS L  L  +NL  T ++   DG    ++ 
Sbjct: 1187 LTDISHISNLTALEELNLGGCYYITSGWKALSELPRLRVLNLESTRVTTRYDGYY--ISR 1244

Query: 250  LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
              SL +LNL+   +TD    A  ++  L  L +   +    G + L     LR L +   
Sbjct: 1245 CKSLVTLNLELCDMTDASYIA--NIKTLEELHIGKCKELTQGFSALFTLPRLRILNLICS 1302

Query: 310  GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRHL 368
             +TD  ++ I+   ++  LNLS    L D T L  I  +  L      ++R ++ G R L
Sbjct: 1303 LITDEDLREIQPPHTIEELNLSYCVELNDITPLGRIKSIKKLHLRQSHDARRSTEGFRSL 1362

Query: 369  KPLKNLRSLTLESCKVTANDIKRLQSR 395
              L  L  + L++  V+++ ++ L  R
Sbjct: 1363 LELPCLSWVDLKNASVSSDILRELGKR 1389



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 163/421 (38%), Gaps = 84/421 (19%)

Query: 34   INLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNC---------------------- 70
            I LV L+L  C +I   + ++  L  LE LNI   CN                       
Sbjct: 746  IPLVSLNLSHCKKI-TSISSIASLTALEELNIDNSCNVTSGWNVFGTLHQLRVATLSNTR 804

Query: 71   ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
            I D +++ +S   +L +L ++ C  +TD  +  L  +  L  LNL+ CP     +++L  
Sbjct: 805  INDENIRYVSECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGT 862

Query: 130  LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
            L     L++  C + D   ++ S + + K L +  N       + +K L+N+ +L     
Sbjct: 863  LPKAGILSMKECYMGDSDAQQCSILWNSKSL-VKLNLERSMGFISVKALSNIATLEELVL 921

Query: 190  GIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF----------- 236
            G   +   + + + L  L+ L L  T       +++S   +L+S+NLS            
Sbjct: 922  GHARKVCCIPSFSCLPRLRVLNLKYTDFNDDVTKNISESKSLQSLNLSHCKWVTDISVLS 981

Query: 237  -------------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
                          GI  G    L  L  L+   L    IT   +A L+S   L  L  F
Sbjct: 982  SLLALEELNVNCCNGIRKG-WESLGKLPLLRVAILSDTNITAKDIACLSSCKTLVKLKFF 1040

Query: 284  G-ARITDSGAAYLRNFKNLRSLEI--CGGGL----------------------TDAGVKH 318
               +++D    Y    ++L  L +  C  GL                      +D  V+ 
Sbjct: 1041 RCEKLSDVTVVY--EIQSLEELIVRSCSDGLKGLNALGTLPRLRFLLLRNVRGSDISVES 1098

Query: 319  IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
            I    SL  L++    +LTD T   +S +T L  L++        G+  L+ L  L+SL 
Sbjct: 1099 IGTSKSLVRLHIEMREDLTDTT--PLSNITSLEELSLRECGDNLGGVGTLEKLPRLKSLD 1156

Query: 379  L 379
            L
Sbjct: 1157 L 1157


>gi|421888173|ref|ZP_16319281.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
           solanacearum K60-1]
 gi|378966462|emb|CCF96029.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
           solanacearum K60-1]
          Length = 466

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 146/321 (45%), Gaps = 32/321 (9%)

Query: 71  ITDSDMKPLSGLTNLKSLQIS-CS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
            +D+D++ L    +L+ L +S C+  +T +GIA L  L  L  L++ GC + A     L+
Sbjct: 138 FSDADLQRLP--PSLRELDLSQCTGPITAAGIARLLAL-PLDRLDVGGCRLNADSARLLA 194

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
              +L  L++ R  + D G   F++   L  LN   N I    +  L   T + +L++  
Sbjct: 195 GHPTLTALDIRRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISD 254

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             IGDEG   L G   L  L+ SD+ +G  G R L+    L S++LS+  I       L 
Sbjct: 255 NEIGDEGARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALG 314

Query: 249 GLSSLKSL------------------------NLDARQITDTGLAALTSLTGLTHLDLFG 284
             ++L +L                        +L +  I   G  A  + T LT L+L  
Sbjct: 315 ENTTLTTLHVCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSN 374

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             I +  +A+  N K L  L+I    + DA  + + D  +LT LN S N  + D     +
Sbjct: 375 NGI-ERVSAWANNSK-LTKLDISNNRIGDAAAQVLADSRTLTTLNASSN-RIGDAGASAL 431

Query: 345 SGLTGLVSLNVSNSRITSAGL 365
           +G T L +LNVS +RI  AGL
Sbjct: 432 AGNTTLATLNVSFNRIGEAGL 452



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 135/288 (46%), Gaps = 16/288 (5%)

Query: 106 LQKLTL----LNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 159
           LQ+L      L+L  C  P+TAA +  L AL  L  L++  C+L+ D     +   +L  
Sbjct: 143 LQRLPPSLRELDLSQCTGPITAAGIARLLAL-PLDRLDVGGCRLNADSARLLAGHPTLTA 201

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L++  N I D  +        L +LN  S GIG  G+  L     +  L++SD ++G  G
Sbjct: 202 LDIRRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISDNEIGDEG 261

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
            R L+G T L  ++ S +GI     R LA   +L SL+L   +I   G  AL   T LT 
Sbjct: 262 ARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALGENTTLTT 321

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L + G  +    AA L     L +L++    +  AG +     ++LT LNLS N      
Sbjct: 322 LHVCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSNNG----- 376

Query: 340 TLELISGL---TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
            +E +S     + L  L++SN+RI  A  + L   + L +L   S ++
Sbjct: 377 -IERVSAWANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSNRI 423



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 135/311 (43%), Gaps = 36/311 (11%)

Query: 35  NLVKLDLERCTRIHGGLVNLKGLMKL-----ESLNIKWCNCITDSDMKPLSGLTNLKSLQ 89
           +L +LDL +CT    G +   G+ +L     + L++  C    DS  + L+G   L +L 
Sbjct: 149 SLRELDLSQCT----GPITAAGIARLLALPLDRLDVGGCRLNADS-ARLLAGHPTLTALD 203

Query: 90  ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 149
           I  + + D+G+A     +KLT LN     +  A + +L+A  ++  L+++  ++ D+G  
Sbjct: 204 IRRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISDNEIGDEGAR 263

Query: 150 KF-------------SKIG-----------SLKVLNLGFNEITDECLVHLKGLTNLESLN 185
                          S IG           +L  L+L +NEI  E    L   T L +L+
Sbjct: 264 ALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALGENTTLTTLH 323

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           +    +G      L     L  L+LS   +GS+G R     T L  +NLS  GI    + 
Sbjct: 324 VCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSNNGIE--RVS 381

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
             A  S L  L++   +I D     L     LT L+    RI D+GA+ L     L +L 
Sbjct: 382 AWANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSNRIGDAGASALAGNTTLATLN 441

Query: 306 ICGGGLTDAGV 316
           +    + +AG+
Sbjct: 442 VSFNRIGEAGL 452



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 119/282 (42%), Gaps = 23/282 (8%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           + A   +  AG   L  LD+ R      G+       KL +LN    N I  + ++ L+ 
Sbjct: 185 LNADSARLLAGHPTLTALDIRRNAIGDAGVAAFARNKKLTALNAS-SNGIGPAGVRALAA 243

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
            T + +L IS +++ D G   L G   LT L+     +      +L+   +L  L+L+  
Sbjct: 244 NTTIATLDISDNEIGDEGARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYN 303

Query: 142 QLSDDGCEKFSKIGSLKVLN-----LGFNEITDECLVHLKGLTNLESLNLDSCG------ 190
           ++  +G E   +  +L  L+     LG  E             +L S  + S G      
Sbjct: 304 EIGAEGAEALGENTTLTTLHVCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGT 363

Query: 191 --------IGDEGLVNLTGLCN---LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
                   + + G+  ++   N   L  L++S+ ++G +  + L+    L ++N S   I
Sbjct: 364 NTTLTKLNLSNNGIERVSAWANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSNRI 423

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
            D     LAG ++L +LN+   +I + GL AL + T L  L+
Sbjct: 424 GDAGASALAGNTTLATLNVSFNRIGEAGLLALEANTTLKKLE 465


>gi|300704109|ref|YP_003745711.1| leucine-rich-repeat type III effector protein (gala5) [Ralstonia
           solanacearum CFBP2957]
 gi|299071772|emb|CBJ43096.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
           solanacearum CFBP2957]
          Length = 535

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 160/357 (44%), Gaps = 29/357 (8%)

Query: 6   SGLSNLTSLSFRR----NNAITAQGMKAFAGLINLVKLDLERC----------------T 45
           +G+++L+ L   R     N I   G++  A    L +LD+ RC                T
Sbjct: 158 AGIAHLSRLPLVRLNLSGNRIGLAGVQRLANHPTLTELDVSRCGIGPEEARALAASARLT 217

Query: 46  RIHG--------GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 97
            ++         G+  L G   L SL++   N + D++ + L     L +L ++ +++  
Sbjct: 218 TLNASHNGVGSEGVQALVGCKTLTSLDLS-DNGLGDAEAQRLGSSERLTTLNVNRNRIDV 276

Query: 98  SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
            G   L   + LT L++ G  +  A +++L A   L  LN+ R ++   G +  +   +L
Sbjct: 277 QGARALAACKTLTSLDIGGNSIGDAGVNALVANAQLTTLNVERAEIGAHGVQALADCKTL 336

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
             L +  N I DE    L   T+L +L+ +S GIG  G   L     L  L L    +G 
Sbjct: 337 TSLRIDNNNIGDEGANTLAASTSLTTLHSESNGIGPTGAQALAANTRLTTLNLGHNSIGD 396

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
           +G +     T L  +++   G+SD    +LA   +L +L+     I D G  AL +   L
Sbjct: 397 AGAQAWLANTTLVWLSVRRNGLSDACAIRLAASKTLTTLDASDNAIKDAGARALAANRTL 456

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           T L++    I ++GA  L     L+SL++    + +AGV+ +    +L+ L +S NC
Sbjct: 457 TALNVSSNEIGNAGARALAANTMLKSLDLRNNRMLEAGVRALLANRTLSSLGVSFNC 513



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 172/382 (45%), Gaps = 10/382 (2%)

Query: 30  FAGLINLVK-LDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTN 84
            AGL   +K LDL RC     GL+   G+  L  L +   N     I  + ++ L+    
Sbjct: 132 LAGLPPTLKTLDLSRCRGRGQGLITAAGIAHLSRLPLVRLNLSGNRIGLAGVQRLANHPT 191

Query: 85  LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
           L  L +S   +       L    +LT LN     V +  + +L    +L  L+L+   L 
Sbjct: 192 LTELDVSRCGIGPEEARALAASARLTTLNASHNGVGSEGVQALVGCKTLTSLDLSDNGLG 251

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
           D   ++      L  LN+  N I  +    L     L SL++    IGD G+  L     
Sbjct: 252 DAEAQRLGSSERLTTLNVNRNRIDVQGARALAACKTLTSLDIGGNSIGDAGVNALVANAQ 311

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           L  L +   ++G+ G++ L+    L S+ +    I D     LA  +SL +L+ ++  I 
Sbjct: 312 LTTLNVERAEIGAHGVQALADCKTLTSLRIDNNNIGDEGANTLAASTSLTTLHSESNGIG 371

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
            TG  AL + T LT L+L    I D+GA A+L N   L  L +   GL+DA    +    
Sbjct: 372 PTGAQALAANTRLTTLNLGHNSIGDAGAQAWLAN-TTLVWLSVRRNGLSDACAIRLAASK 430

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           +LT L+ S N  + D     ++    L +LNVS++ I +AG R L     L+SL L + +
Sbjct: 431 TLTTLDASDNA-IKDAGARALAANRTLTALNVSSNEIGNAGARALAANTMLKSLDLRNNR 489

Query: 384 VTANDIKR-LQSRDLPNL-VSF 403
           +    ++  L +R L +L VSF
Sbjct: 490 MLEAGVRALLANRTLSSLGVSF 511



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 100/232 (43%), Gaps = 2/232 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+    LTSL     N+I   G+ A      L  L++ER      G+  L     L SL 
Sbjct: 282 LAACKTLTSLDIG-GNSIGDAGVNALVANAQLTTLNVERAEIGAHGVQALADCKTLTSLR 340

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I D     L+  T+L +L    + +  +G   L    +LT LNL    +  A  
Sbjct: 341 ID-NNNIGDEGANTLAASTSLTTLHSESNGIGPTGAQALAANTRLTTLNLGHNSIGDAGA 399

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            +  A  +L +L++ R  LSD    + +   +L  L+   N I D     L     L +L
Sbjct: 400 QAWLANTTLVWLSVRRNGLSDACAIRLAASKTLTTLDASDNAIKDAGARALAANRTLTAL 459

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
           N+ S  IG+ G   L     LK L+L + ++  +G+R L     L S+ +SF
Sbjct: 460 NVSSNEIGNAGARALAANTMLKSLDLRNNRMLEAGVRALLANRTLSSLGVSF 511


>gi|443316011|ref|ZP_21045475.1| Leucine Rich Repeat (LRR)-containing protein [Leptolyngbya sp. PCC
           6406]
 gi|442784393|gb|ELR94269.1| Leucine Rich Repeat (LRR)-containing protein [Leptolyngbya sp. PCC
           6406]
          Length = 437

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 168/339 (49%), Gaps = 47/339 (13%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           D++PLS LTNL SL +S ++++D  I  L  L KL  L LE   +T   + SL  L +L 
Sbjct: 94  DVRPLSTLTNLTSLVLSGNQISD--IQPLASLTKLESLFLESNQITN--IQSLGGLHNLT 149

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-----------------LVHLKG 177
           +L+L+  Q+ D   +  S +  L+ L L  N+I D                   +V +  
Sbjct: 150 WLSLSGNQVVD--VQPLSNLTGLEWLFLDDNQIVDVAPLATLQNLERLLLSYNQIVEIGA 207

Query: 178 LTNLESL-NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
           L+ LE L NL   G   E +  L+GL NL  LEL + QV    ++ L+ L NL  + L  
Sbjct: 208 LSALEKLQNLYLNGNQIEDVQPLSGLRNLAWLELKENQV--MNIQPLADLENLRWLGLDD 265

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I D  ++ LA LS+LK+L L+  QITD  +++L +LT L  L L   +I D  +  L 
Sbjct: 266 NQIVD--VQPLAALSTLKNLYLNGNQITD--VSSLAALTNLESLVLGDNQIVDIQSLSL- 320

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV- 355
             +NL  L + G          I ++S L+ L   +   L D  ++ +  L  L +L+V 
Sbjct: 321 -LENLTFLVLSG--------NQIVNVSPLSALVRLERLGLNDNQIQDVQPLATLTNLSVL 371

Query: 356 --SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
             SN++I    +  L  L+N+  L+L+  ++   DI+ L
Sbjct: 372 VLSNNQIVD--VEPLAALENVGLLSLDHNQIV--DIQPL 406



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 141/295 (47%), Gaps = 34/295 (11%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGL----------INLVKL----DLERCTRIH 48
           ++L GL NLT LS   N  +  Q +    GL          +++  L    +LER    +
Sbjct: 140 QSLGGLHNLTWLSLSGNQVVDVQPLSNLTGLEWLFLDDNQIVDVAPLATLQNLERLLLSY 199

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
             +V +  L  LE L   + N     D++PLSGL NL  L++  ++V +  I  L  L+ 
Sbjct: 200 NQIVEIGALSALEKLQNLYLNGNQIEDVQPLSGLRNLAWLELKENQVMN--IQPLADLEN 257

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L  L L+   +    +  L+AL +L  L LN  Q++D      + + +L+ L LG N+I 
Sbjct: 258 LRWLGLDDNQIVD--VQPLAALSTLKNLYLNGNQITD--VSSLAALTNLESLVLGDNQIV 313

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVN---LTGLCNLKCLELSDTQVGSSGLRHLSG 225
           D     ++ L+ LE  NL    +    +VN   L+ L  L+ L L+D Q+    ++ L+ 
Sbjct: 314 D-----IQSLSLLE--NLTFLVLSGNQIVNVSPLSALVRLERLGLNDNQI--QDVQPLAT 364

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           LTNL  + LS   I D  +  LA L ++  L+LD  QI D    +  S  GL HL
Sbjct: 365 LTNLSVLVLSNNQIVD--VEPLAALENVGLLSLDHNQIVDIQPLSQLSRLGLLHL 417


>gi|290980460|ref|XP_002672950.1| predicted protein [Naegleria gruberi]
 gi|284086530|gb|EFC40206.1| predicted protein [Naegleria gruberi]
          Length = 331

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 4/210 (1%)

Query: 147 GCEKFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
           G EK   I  +K L   ++ +N I  E    +  +  L SLN++   IG EG   ++G+ 
Sbjct: 121 GIEKLKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMK 180

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
            L  L + + ++G  G +++S +  L S+++    I D  ++ ++ +  L SLN+    I
Sbjct: 181 QLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVI 240

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
            D G   +  +  LT L++    I D GA Y+   K L SL I    + +AG K I ++ 
Sbjct: 241 GDAGAKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEMK 300

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            LT L+++ N  +  +  + IS +  L+SL
Sbjct: 301 QLTSLDIAGN-RIGGEGAKFISEMKQLISL 329



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 105/214 (49%), Gaps = 3/214 (1%)

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
           G E L  ++ +  L  L++S  ++   G + +S +  L S+N++   I     + ++G+ 
Sbjct: 121 GIEKLKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMK 180

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L SL +   +I   G   ++ +  L  LD+ G +I D     +   K L SL I    +
Sbjct: 181 QLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVI 240

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
            DAG K I D+  LT LN+S N  + D+  + I+ +  L SLN++ + I +AG + +  +
Sbjct: 241 GDAGAKFIGDMKQLTSLNISYNV-IGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEM 299

Query: 372 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 405
           K L SL +   ++     K +   ++  L+S R 
Sbjct: 300 KQLTSLDIAGNRIGGEGAKFIS--EMKQLISLRK 331



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 98/202 (48%)

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L  +S +  L  L+++  ++  +G +  S++  L  LN+  N I  E    + G+  L S
Sbjct: 125 LKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMKQLTS 184

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           L + +  IG EG   ++ +  L  L++   Q+G   ++ +S +  L S+N++   I D  
Sbjct: 185 LYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVIGDAG 244

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
            + +  +  L SLN+    I D G   +  +  LT L++    I ++GA ++   K L S
Sbjct: 245 AKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEMKQLTS 304

Query: 304 LEICGGGLTDAGVKHIKDLSSL 325
           L+I G  +   G K I ++  L
Sbjct: 305 LDIAGNRIGGEGAKFISEMKQL 326



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 106/229 (46%), Gaps = 24/229 (10%)

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           +K +S +  L SL IS +++   G   +  +++LT LN+ G  +       +S +  L  
Sbjct: 125 LKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMKQLTS 184

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L +   ++  +G +  S++  L  L++G N+I DE +  +  +  L SLN+ +  IGD  
Sbjct: 185 LYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVIGD-- 242

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
                                 +G + +  +  L S+N+S+  I D   + +  +  L S
Sbjct: 243 ----------------------AGAKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTS 280

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           LN+   +I + G   ++ +  LT LD+ G RI   GA ++   K L SL
Sbjct: 281 LNITRNEIGNAGAKFISEMKQLTSLDIAGNRIGGEGAKFISEMKQLISL 329



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 4/151 (2%)

Query: 232 INLSFTGISDGSLRKLAGLSSLK---SLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           +NL F G   G + KL  +S +K   SL++   +I   G   ++ +  LT L++ G  I 
Sbjct: 110 VNLKFLGYLLGGIEKLKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIG 169

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
             GA ++   K L SL I    +   G K+I ++  L  L++  N  + D+ ++LIS + 
Sbjct: 170 GEGAKFISGMKQLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGN-QIGDEEVKLISEMK 228

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
            L SLN++N+ I  AG + +  +K L SL +
Sbjct: 229 QLTSLNIANNVIGDAGAKFIGDMKQLTSLNI 259



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 95/190 (50%), Gaps = 4/190 (2%)

Query: 49  GGLVNLKGLMKLE---SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 105
           GG+  LK + +++   SL+I + N I     K +S +  L SL I+ + +   G  ++ G
Sbjct: 120 GGIEKLKFISEMKQLISLDISY-NRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISG 178

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           +++LT L +    +       +S +  L  L++   Q+ D+  +  S++  L  LN+  N
Sbjct: 179 MKQLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANN 238

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
            I D     +  +  L SLN+    IGDEG   +  +  L  L ++  ++G++G + +S 
Sbjct: 239 VIGDAGAKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISE 298

Query: 226 LTNLESINLS 235
           +  L S++++
Sbjct: 299 MKQLTSLDIA 308


>gi|261334051|emb|CBH17045.1| T. brucei spp.-specific protein [Trypanosoma brucei gambiense
           DAL972]
          Length = 1399

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 161/350 (46%), Gaps = 12/350 (3%)

Query: 36  LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 95
           +V L+L  C ++   + ++  L  L  LN+  C  I ++  + L  L  L    +S + +
Sbjct: 538 IVSLNLSHCWKV-TSVFHISALETLNELNLSDCIRI-NAGWEALEKLQQLHVAILSNTHI 595

Query: 96  TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 155
           TD  I++    ++L  L+L  C      + SLS + +L  LNL+ C     G     ++ 
Sbjct: 596 TDRDISHFSKCKELVTLDLSFCDELFD-ITSLSNITTLEDLNLDNCSKIRKGLSVLGELP 654

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ 214
            L+VLN+    +T+  +  L    +   L LD+C G+ D  +  L+ L  LK L L    
Sbjct: 655 RLRVLNVKGVHLTNSVIGSLGNGKSFVKLILDNCKGLSD--VTFLSSLSTLKELNLHHCD 712

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-DARQITDTGLAALT 272
             +SG+  L  L  L  ++L +T I + SL  +   SS L SLNL   ++I  T ++A+ 
Sbjct: 713 AVTSGIGTLGRLLQLRVLDLGWTKIDNNSLEDICACSSPLVSLNLSHCKEI--TSISAIA 770

Query: 273 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
           SL  L  L++       SG         LR   +    + D  ++HI +  SL  LNL+ 
Sbjct: 771 SLNALEKLNIDNCCHVTSGWNVFGTLHQLRVAVLSNTRINDENIRHISECKSLNTLNLAF 830

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
             ++TD T   +S +T L  LN+        G+  L  L  LR L  + C
Sbjct: 831 CNDITDIT--ALSNITMLRELNIDWCFNIEKGVEALGKLPKLRELDAKKC 878



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 189/403 (46%), Gaps = 28/403 (6%)

Query: 3    ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE- 61
            E +S   +L SL+    N IT   + A + L  L +L++  C RI  G    + L +L  
Sbjct: 959  EGISQSKSLQSLNVSNCNYIT--DISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRV 1016

Query: 62   -SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             +L++ W   +T+  ++ LSG  NL++L++ C +   S I  +  ++ L  L ++ C   
Sbjct: 1017 ATLSVTW---VTNEGIRLLSGCKNLRNLELYCCRDV-SNIEPINNIKSLEELTIQNCHNI 1072

Query: 121  AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLT 179
               L  +  L  L  L L + Q +        +  SL  L + G  E+ D     +K ++
Sbjct: 1073 NEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCD-----IKLIS 1127

Query: 180  NLESLNLDSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
            N+ +L       GD  L+N  G    L  L  L LS   +G++    +  + +L+S++++
Sbjct: 1128 NIATLKELKIAHGDR-LLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDIT 1186

Query: 236  FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAY 294
             +      +  ++ L++L+ LNL       +G  ALT+L  L  L+L   R+T S G  Y
Sbjct: 1187 HS-FELPDIYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTSYGGYY 1245

Query: 295  LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
            +   K+L +L +    +TDA    + D+ +L  L++ + C    +    +  L  L  LN
Sbjct: 1246 ISRCKSLITLNLESCDMTDASC--LADIKTLEELHIGK-CEELTRGFSALFTLPQLRILN 1302

Query: 355  VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI---KRLQS 394
            + +S IT   LR ++    +  L L  CK   NDI   +R++S
Sbjct: 1303 LMDSLITDEDLREIQLSHTIEDLNLSYCK-ELNDITPVRRIKS 1344



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 176/378 (46%), Gaps = 24/378 (6%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNL 85
           + + + +  L  L+L+ C++I  GL  L  L +L  LN+K  + +T+S +  L +G + +
Sbjct: 623 ITSLSNITTLEDLNLDNCSKIRKGLSVLGELPRLRVLNVKGVH-LTNSVIGSLGNGKSFV 681

Query: 86  KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 145
           K +  +C  ++D  + +L  L  L  LNL  C    + + +L  L  L  L+L   ++ +
Sbjct: 682 KLILDNCKGLSD--VTFLSSLSTLKELNLHHCDAVTSGIGTLGRLLQLRVLDLGWTKIDN 739

Query: 146 DGCEKFSKIGS-LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
           +  E      S L  LNL    EIT   +  +  L  LE LN+D+C     G      L 
Sbjct: 740 NSLEDICACSSPLVSLNLSHCKEITS--ISAIASLNALEKLNIDNCCHVTSGWNVFGTLH 797

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ 262
            L+   LS+T++    +RH+S   +L ++NL+F   I+D  +  L+ ++ L+ LN+D   
Sbjct: 798 QLRVAVLSNTRINDENIRHISECKSLNTLNLAFCNDITD--ITALSNITMLRELNIDWCF 855

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGV 316
             + G+ AL  L  L  LD   A+   +   +++       FK+L  L +   G     V
Sbjct: 856 NIEKGVEALGKLPKLRELD---AKKCGTSVRWMQQYPYNTLFKSLVKLNL-ENGRESFCV 911

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
             +   + +  L L + C      L  IS L  L  LN+ + R+    L  +   K+L+S
Sbjct: 912 GTLSSTAIVEELLLGRACE--PYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQS 969

Query: 377 LTLESCKVTANDIKRLQS 394
           L + +C     DI  L S
Sbjct: 970 LNVSNCNYIT-DISALSS 986



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 148/328 (45%), Gaps = 40/328 (12%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           LE LN+ +C  I  +++ PLS  T ++ L ++ C ++T  GI  +  L KL +L+++G  
Sbjct: 325 LERLNLSYC--IQLTNINPLSNATAIEELNLNGCRRIT-RGIGVVWALPKLRVLHMKGVH 381

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           ++   LDS+   GSL  ++L+ C                     GF ++T      L  +
Sbjct: 382 LSEPSLDSVGTGGSLVKVSLDNCA--------------------GFGDMT-----LLSSI 416

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFT 237
             LE LN+  C     G+  L  L  L+ L + +  + S     +    +L  + L S T
Sbjct: 417 VTLEELNIQKCADIISGVCCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLTLESIT 476

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
           G+S+  +  LA + +L+ L+L      D G+  L +L  L  LDL G   T++ +  LR 
Sbjct: 477 GLSN--VEALANILTLEKLSLLGCNGIDAGIGCLGNLPQLKVLDLSG---TNTDSDSLRG 531

Query: 298 F---KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
               + + SL +         V HI  L +L  LNLS +C   +   E +  L  L    
Sbjct: 532 LCVSQTIVSLNL-SHCWKVTSVFHISALETLNELNLS-DCIRINAGWEALEKLQQLHVAI 589

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESC 382
           +SN+ IT   + H    K L +L L  C
Sbjct: 590 LSNTHITDRDISHFSKCKELVTLDLSFC 617



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 157/352 (44%), Gaps = 44/352 (12%)

Query: 76   MKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
            + P+S L  L+ L +   +V D    GI+  K LQ L   N+  C      + +LS+L +
Sbjct: 934  LPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSL---NVSNCNYITD-ISALSSLST 989

Query: 133  LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN------------ 180
            L  LN+N C     G E F  +  L+V  L    +T+E +  L G  N            
Sbjct: 990  LEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRLLSGCKNLRNLELYCCRDV 1049

Query: 181  -----------LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
                       LE L + +C   +EGL+ +  L  L+ L L   Q     L  L    +L
Sbjct: 1050 SNIEPINNIKSLEELTIQNCHNINEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSL 1109

Query: 230  ESINLSFTGISD-GSLRKLAGLSSLKSLNLDA--RQITDTGLAALTSLTGLTHLDLFGAR 286
              + L+  G  +   ++ ++ +++LK L +    R + D G   L  L  L  L L    
Sbjct: 1110 --VKLTIEGPEELCDIKLISNIATLKELKIAHGDRLLNDVG--DLGKLPWLHVLTLSHFN 1165

Query: 287  ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
            + ++    +   ++L+SL+I         + HI +L++L  LNLS  C       E ++ 
Sbjct: 1166 MGNTCFESVCKIRSLKSLDI-THSFELPDIYHISNLTALEELNLS-GCYHIISGWEALTA 1223

Query: 347  LTGLVSLNVSNSRI-TSAGLRHLKPLKNLRSLTLESCKVTA----NDIKRLQ 393
            L  L  LN+S++R+ TS G  ++   K+L +L LESC +T      DIK L+
Sbjct: 1224 LPRLRVLNLSSTRVTTSYGGYYISRCKSLITLNLESCDMTDASCLADIKTLE 1275



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 177/402 (44%), Gaps = 56/402 (13%)

Query: 22   ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
            +T +G++  +G  NL  L+L  C R    +  +  +  LE L I+ C+ I +  +K +  
Sbjct: 1024 VTNEGIRLLSGCKNLRNLEL-YCCRDVSNIEPINNIKSLEELTIQNCHNINEGLLK-VGM 1081

Query: 82   LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG----CPVTAAC-------------- 123
            L  L+ L +   + T   ++ L   + L  L +EG    C +                  
Sbjct: 1082 LPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKLISNIATLKELKIAHGD 1141

Query: 124  --LDSLSALGSLFYLN---LNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKG 177
              L+ +  LG L +L+   L+   + +   E   KI SLK L++  + E+ D  + H+  
Sbjct: 1142 RLLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDITHSFELPD--IYHISN 1199

Query: 178  LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSF 236
            LT LE LNL  C     G   LT L  L+ L LS T+V +S G  ++S   +L ++NL  
Sbjct: 1200 LTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKSLITLNLES 1259

Query: 237  TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
              ++D S   LA + +L+ L++   +    G +AL +L  L  L+L  + ITD       
Sbjct: 1260 CDMTDASC--LADIKTLEELHIGKCEELTRGFSALFTLPQLRILNLMDSLITD------- 1310

Query: 297  NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNV 355
              ++LR +++            I+DL      NLS    L D T +  I  +  +     
Sbjct: 1311 --EDLREIQLS---------HTIEDL------NLSYCKELNDITPVRRIKSIKKMDLHRS 1353

Query: 356  SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 397
            S  R    G R L  L  L  + +++  V+ +  K L+ R +
Sbjct: 1354 SEGRGLREGFRSLLELPCLSWVDIKNANVSFDVYKELKERKV 1395



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 169/391 (43%), Gaps = 33/391 (8%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           ++  + L NL  LDL         +  +    KL  L++  CN I D+   P+S L  L+
Sbjct: 221 IRGISRLTNLKCLDLNSTNIDDSCIGEISACAKLSKLSVSECNNIIDA--TPISQLAALE 278

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC----- 141
            L ++ +     GI  L  L +L +L+L G  V    L  L   G L  LNL+ C     
Sbjct: 279 ELNLNSNCHITKGIGTLGMLLRLRMLDLSGVSVEDNFLKDLCDCGPLERLNLSYCIQLTN 338

Query: 142 -----------QLSDDGCEKFSK-------IGSLKVLNLGFNEITDECLVHLKGLTNLES 183
                      +L+ +GC + ++       +  L+VL++    +++  L  +    +L  
Sbjct: 339 INPLSNATAIEELNLNGCRRITRGIGVVWALPKLRVLHMKGVHLSEPSLDSVGTGGSLVK 398

Query: 184 LNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           ++LD+C G GD  L  L+ +  L+ L +       SG+  L  L  L  +N+    IS  
Sbjct: 399 VSLDNCAGFGDMTL--LSSIVTLEELNIQKCADIISGVCCLGTLPYLRVLNIKEAHISSL 456

Query: 243 SLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
               +    SL  L L++  IT  + + AL ++  L  L L G    D+G   L N   L
Sbjct: 457 DFTGIGASKSLLQLTLES--ITGLSNVEALANILTLEKLSLLGCNGIDAGIGCLGNLPQL 514

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           + L++ G       ++ +    ++  LNLS    +T  ++  IS L  L  LN+S+    
Sbjct: 515 KVLDLSGTNTDSDSLRGLCVSQTIVSLNLSHCWKVT--SVFHISALETLNELNLSDCIRI 572

Query: 362 SAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           +AG   L+ L+ L    L +  +T  DI   
Sbjct: 573 NAGWEALEKLQQLHVAILSNTHITDRDISHF 603


>gi|222617264|gb|EEE53396.1| hypothetical protein OsJ_36445 [Oryza sativa Japonica Group]
          Length = 625

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 193/426 (45%), Gaps = 51/426 (11%)

Query: 9   SNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNI 65
           + L  LS  +   +T  G+ K   G   L KL L+ C  I    ++L  K   +L SL+I
Sbjct: 122 TGLRELSLEKCLGVTDMGLAKVVVGCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDI 181

Query: 66  KWCNCITDSDMKPLSGLTNLKSL-QISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAA 122
            +   + +  ++ +S L  L+ L  + CS + D G+  L KG   L  +++  C  VT+ 
Sbjct: 182 SYLK-VGNESLRSISSLEKLEELAMVCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQ 240

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLK----VLNLGFNEITDECLVHLKG 177
            L SL   G  F   LN      +  + F S +  LK    VL L   E++   L+ + G
Sbjct: 241 GLASLID-GHNFLQKLNAADSLHEMRQSFLSNLAKLKDTLTVLRLDGLEVSSSVLLAIGG 299

Query: 178 LTNLESLNLDSC-GIGDEGLVNLTGLC------NLKCLEL-------------------- 210
             NL  + L  C G+ DEG+ +L   C      +L C  L                    
Sbjct: 300 CNNLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSIAENCKMVEHLR 359

Query: 211 --SDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDT 266
             S + +   GL  ++    NL+ I+L+  G++D +L+ LA  S L  L L     I+D 
Sbjct: 360 LESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDK 419

Query: 267 GLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDL 322
           GLA ++S  G L  LDL+    ITD G A L N  K ++ L +C    +TD+G+ H+  L
Sbjct: 420 GLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSL 479

Query: 323 SSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTL 379
             LT L L     +T   +  ++ G   L+ +++     +  AGL  L     NLR LT+
Sbjct: 480 EELTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRCYSVDDAGLWALARYALNLRQLTI 539

Query: 380 ESCKVT 385
             C+VT
Sbjct: 540 SYCQVT 545



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 182/386 (47%), Gaps = 45/386 (11%)

Query: 36  LVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTN-LKSLQISC 92
           L +L LE+C  +   GL  +  G  +LE L++KWC  I+D  +  LS   + L+SL IS 
Sbjct: 124 LRELSLEKCLGVTDMGLAKVVVGCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISY 183

Query: 93  SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS--LSALG----SLFYLNLNRCQLSDD 146
            KV +  +  +  L+KL  L +    V  +C+D   L  LG    SL  ++++RC     
Sbjct: 184 LKVGNESLRSISSLEKLEELAM----VCCSCIDDDGLELLGKGSNSLQSVDVSRC----- 234

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN-L 205
             +  +  G   +++ G N         L+ L   +SL+     +    L NL  L + L
Sbjct: 235 --DHVTSQGLASLID-GHN--------FLQKLNAADSLH----EMRQSFLSNLAKLKDTL 279

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQ 262
             L L   +V SS L  + G  NL  I LS   G++D  +  L    S L+ ++L     
Sbjct: 280 TVLRLDGLEVSSSVLLAIGGCNNLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNL 339

Query: 263 ITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLR-NFKNLRSLEICGGGLTDAGVKHI 319
           +T+  L ++      + HL L   + I++ G   +  +  NL+ +++   G+ DA ++H+
Sbjct: 340 LTNNALDSIAENCKMVEHLRLESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHL 399

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTG-LVSLNVSN-SRITSAGLRHLK-PLKNLRS 376
              S L +L L    +++DK L  IS   G L+ L++   + IT  GL  L    K ++ 
Sbjct: 400 AKCSELLVLKLGLCSSISDKGLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKM 459

Query: 377 LTLESC-KVTANDIKRLQS-RDLPNL 400
           L L  C K+T + +  L S  +L NL
Sbjct: 460 LNLCYCNKITDSGLGHLGSLEELTNL 485



 Score = 41.6 bits (96), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 11/176 (6%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRI-HGGLVNLK-GLMK 59
           ++L+  S L  L     ++I+ +G+   +     L++LDL RC  I   GL  L  G  K
Sbjct: 397 QHLAKCSELLVLKLGLCSSISDKGLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKK 456

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNLEGC 117
           ++ LN+ +CN ITDS +  L  L  L +L++ C  ++T  GI+ +  G + L  ++L+ C
Sbjct: 457 IKMLNLCYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRC 516

Query: 118 -PVTAACLDSLSALG-SLFYLNLNRCQLSDDG-CEKFSKIGSL---KVLNLGFNEI 167
             V  A L +L+    +L  L ++ CQ++  G C   S +  L   K+++L +  I
Sbjct: 517 YSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHLLSSLRCLQDVKMVHLSWVSI 572



 Score = 41.6 bits (96), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 134/310 (43%), Gaps = 75/310 (24%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRI-------------HGGLVNL-------------- 54
           +++  + A  G  NLV++ L +C  +             H  +++L              
Sbjct: 289 VSSSVLLAIGGCNNLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSI 348

Query: 55  -KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 112
            +    +E L ++ C+ I++  ++ ++    NLK + ++   V D+ + +L    +L +L
Sbjct: 349 AENCKMVEHLRLESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVL 408

Query: 113 NLEGC-PVTAACLDSL-SALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLGF-NEI 167
            L  C  ++   L  + S+ G L  L+L RC  ++DDG    +     +K+LNL + N+I
Sbjct: 409 KLGLCSSISDKGLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKI 468

Query: 168 TD-----------------ECLVHLKGL---------TNLESLNLDSC-GIGDEGLVNLT 200
           TD                  CLV + G+          NL  ++L  C  + D GL  L 
Sbjct: 469 TDSGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRCYSVDDAGLWALA 528

Query: 201 GLC-NLKCLELSDTQVGSSGLRH----LSGLTNLESINLSFTGISD---------GSLRK 246
               NL+ L +S  QV   GL H    L  L +++ ++LS+  I           G L+K
Sbjct: 529 RYALNLRQLTISYCQVTGLGLCHLLSSLRCLQDVKMVHLSWVSIEGFEMALRAACGRLKK 588

Query: 247 LAGLSSLKSL 256
           L  LS LKS+
Sbjct: 589 LKMLSGLKSV 598


>gi|343419347|emb|CCD19427.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
          Length = 1478

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 122/381 (32%), Positives = 191/381 (50%), Gaps = 60/381 (15%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            LS +S+L +L+      IT   +   + LI L  LDL  CT I   +  L  L +LE+LN
Sbjct: 744  LSKMSSLYTLNLSYCTGIT--DVSPLSMLIRLETLDLTGCTGI-TDVSPLSKLSRLETLN 800

Query: 65   IKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
            +++C  IT  D+ PLS L+ L++L  + C+ +TD  ++ L  L +L  LNL  C      
Sbjct: 801  LRYCTGIT--DVSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGITD- 855

Query: 124  LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
            +  LS + +L  L+L+ C                     G  +++      L  ++NL S
Sbjct: 856  VSPLSLISNLRTLDLSHCT--------------------GITDVSP-----LSLMSNLCS 890

Query: 184  LNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISD 241
            L L  C GI D  +  L+ L  L+ L+LS    G + +  LS L+ LE++NL + TGI+D
Sbjct: 891  LYLSHCTGITD--VPPLSMLIRLEKLDLSGC-TGITDVSPLSKLSRLETLNLMYCTGITD 947

Query: 242  GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYLRN 297
             S   L+ LS L++LNL    +  TG+  ++ L+ L+ L+    ++   ITD   + L +
Sbjct: 948  VS--PLSKLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSD 999

Query: 298  FKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
            F NLR+L++    G+TD  V  +  L  L  L+LS    +TD     +S L+ L+ LNV 
Sbjct: 1000 FINLRTLDLSFYTGITD--VSPLSMLIRLENLSLSNIAGITD-----VSPLSTLIRLNVL 1052

Query: 357  NSRITSAGLRHLKPLKNLRSL 377
                   G+  + PL  L SL
Sbjct: 1053 YLS-GCTGITDVSPLSKLSSL 1072



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 123/341 (36%), Positives = 174/341 (51%), Gaps = 29/341 (8%)

Query: 5    LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            LS +SNL SL       IT   +   + LI L KLDL  CT I   +  L  L +LE+LN
Sbjct: 1135 LSLMSNLCSLYLSHCTGIT--DVPPLSMLIRLEKLDLSGCTGI-TDVSPLSKLSRLETLN 1191

Query: 65   IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
            + +C  IT  D+ PLS ++NL SL +S C+ +TD  ++ L  L +L  L+L GC      
Sbjct: 1192 LMYCTGIT--DVSPLSLMSNLCSLYLSHCTGITD--VSPLSMLIRLEKLDLSGCTGITD- 1246

Query: 124  LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE 182
            +  LS L  L  LNL  C    D     SK+  L+ LNL +   ITD  +  L  ++NL 
Sbjct: 1247 VSPLSKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLC 1303

Query: 183  SLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGIS 240
            SL L  C GI D  +  L+ L  L+ L L     G + +  LS L+ LE++NL + TGI+
Sbjct: 1304 SLYLSHCTGITD--VPPLSKLSRLETLNLMYC-TGITDVSPLSKLSRLETLNLMYCTGIT 1360

Query: 241  DGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNF 298
            D S   L+ +S+L++L+L     ITD  ++ L+ ++ L  L L     ITD     L   
Sbjct: 1361 DVS--PLSLISNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSML 1414

Query: 299  KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
              L   ++ G  G+TD  V  +  LS L  LNL     +TD
Sbjct: 1415 IRLEKSDLSGCTGITD--VSPLSKLSRLETLNLMYCTGITD 1453



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 198/433 (45%), Gaps = 84/433 (19%)

Query: 4    NLSGLSNLTSLS-FRRNNAITAQG------MKAFAGLINLVKLDLERCTRIHGGLVNLKG 56
            N++G+++++ LS   R N +   G      +   + L +L  LDL  CT I   +  L  
Sbjct: 1033 NIAGITDVSPLSTLIRLNVLYLSGCTGITDVSPLSKLSSLRTLDLSHCTGI-TDVSPLSK 1091

Query: 57   LMKLESLNIKWCNCITD---------------------SDMKPLSGLTNLKSLQIS-CSK 94
            L +LE+LN+ +C  ITD                     +D+ PLS ++NL SL +S C+ 
Sbjct: 1092 LSRLETLNLMYCTGITDVSPLSLISNLRTLDLSHCTGITDVSPLSLMSNLCSLYLSHCTG 1151

Query: 95   VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL---------------- 138
            +TD  +  L  L +L  L+L GC      +  LS L  L  LNL                
Sbjct: 1152 ITD--VPPLSMLIRLEKLDLSGCTGITD-VSPLSKLSRLETLNLMYCTGITDVSPLSLMS 1208

Query: 139  NRCQLSDDGCEKFSKIGSLKVLNL-------GFNEITDECLVHLKGLTNLESLNLDSC-G 190
            N C L    C   + +  L +L         G   ITD  +  L  L+ LE+LNL  C G
Sbjct: 1209 NLCSLYLSHCTGITDVSPLSMLIRLEKLDLSGCTGITD--VSPLSKLSRLETLNLMYCTG 1266

Query: 191  IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG 249
            I D  +  L+ L  L+ L L     G + +  LS ++NL S+ LS  TGI+D  +  L+ 
Sbjct: 1267 ITD--VSPLSKLSRLETLNLMYC-TGITDVSPLSLMSNLCSLYLSHCTGITD--VPPLSK 1321

Query: 250  LSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYLRNFKNLRSLE 305
            LS L++LNL    +  TG+  ++ L+ L+ L+    ++   ITD     L    NLR+L+
Sbjct: 1322 LSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITDVSPLSL--ISNLRTLD 1375

Query: 306  ICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
            +    G+TD  V  +  +S+L  L LS    +TD     +  L+ L+ L  S+      G
Sbjct: 1376 LSHCTGITD--VSPLSLMSNLCSLYLSHCTGITD-----VPPLSMLIRLEKSDLS-GCTG 1427

Query: 365  LRHLKPLKNLRSL 377
            +  + PL  L  L
Sbjct: 1428 ITDVSPLSKLSRL 1440



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 116/356 (32%), Positives = 174/356 (48%), Gaps = 33/356 (9%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNL 85
           +   + L +L  LDL  CT    G+ ++  L KL SL      +C   +D+ PLS L+ L
Sbjct: 440 VSPLSELSSLRTLDLSHCT----GITDVSPLSKLSSLRTFDLSHCTGITDVSPLSTLSGL 495

Query: 86  KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
           + L +S C+ V  SG+  L  L+ L  L L    +  A L  +  L  L  L+L+ C   
Sbjct: 496 EVLNLSGCTGVA-SGVDSLCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDLSHCT-G 553

Query: 145 DDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 202
                  S +  L+VLNL G  +ITD  +  L  L  + +LNL  C GI D  +  L+ L
Sbjct: 554 ITNVSPLSTLSGLEVLNLSGCADITD--ISPLSDLNIMHTLNLSFCTGITD--VSPLSKL 609

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-A 260
             L+ L L     G + +  LS ++NL +++LS  TGI+D S   L+ +S+L++L+L   
Sbjct: 610 SRLETLNLMYC-TGITDVSPLSLISNLRTLDLSHCTGITDVS--PLSLISNLRTLDLSHC 666

Query: 261 RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKH 318
             ITD  +  L+ L  L  LDL G   ITD   + L     L +L +    G+TD  V  
Sbjct: 667 TGITD--VPPLSMLIRLEKLDLSGCTGITD--VSPLSKLSRLETLNLMYCTGITD--VSP 720

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
           +  LS L  LNL     +TD  +  +S ++ L +LN+S       G+  + PL  L
Sbjct: 721 LSKLSRLETLNLMYCTGITD--VSPLSKMSSLYTLNLSY----CTGITDVSPLSML 770



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 186/423 (43%), Gaps = 93/423 (21%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           ++EN   + + TSL+  R+  I   G+ +   L  + +L L +       L  +     L
Sbjct: 208 LSENCQPMESHTSLTVGRDCFIPCLGVVSEEVLAGVSRLTLNKVELTDRDLWRIHKCSNL 267

Query: 61  ESLNIKWC-------------------NCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI 100
           ++L+I+ C                   NC    D + + G++ L+ + IS C  + +   
Sbjct: 268 KALSIEECTGRICLGTQMPHGNSPTRENC---DDTERVRGISCLEEITISNCMNIKE--- 321

Query: 101 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160
             +KG                  L++L+ +  L ++N N   +SDD     S+  +  +L
Sbjct: 322 --IKG------------------LNTLACISRLRFINSN---ISDDCVANISE--NKHIL 356

Query: 161 NLGFNEITDECLVHLKGLTN---LESLNLDSC------------------------GIGD 193
            L F +  +  +  L+ L N   +ESL + +C                         I D
Sbjct: 357 ELEFQDCAN--ITSLRPLANSQLIESLVISNCINLESEINVLAALNRLRELRLSRLAIND 414

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSS 252
             L +L     L+ L+LS    G + +  LS L++L +++LS  TGI+D S   L+ LSS
Sbjct: 415 ATLRDLDVSKCLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITDVS--PLSKLSS 471

Query: 253 LKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           L++ +L     ITD  ++ L++L+GL  L+L G     SG   L + + LR L +    +
Sbjct: 472 LRTFDLSHCTGITD--VSPLSTLSGLEVLNLSGCTGVASGVDSLCSLRMLRELRLSRLAI 529

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
            DA ++ I  L  L  L+LS    +T+  +  +S L+GL  LN+S      A +  + PL
Sbjct: 530 NDAVLRDIVVLKCLRTLDLSHCTGITN--VSPLSTLSGLEVLNLSG----CADITDISPL 583

Query: 372 KNL 374
            +L
Sbjct: 584 SDL 586


>gi|428304096|ref|YP_007140921.1| hypothetical protein Cri9333_0441 [Crinalium epipsammum PCC 9333]
 gi|428245631|gb|AFZ11411.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
           9333]
          Length = 504

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/227 (38%), Positives = 128/227 (56%), Gaps = 22/227 (9%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113
           L+ L KL +L +   N I  SD+KPL GLTNL  L +S +K++D  +  L GL KLT L+
Sbjct: 109 LRSLTKLTTLELV-SNKI--SDVKPLFGLTNLNRLDLSDNKISD--VKPLTGLTKLTELD 163

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           L    ++   ++ L  L +L  L+L+R +LSD   +    +  L +L L  N+I+D  L 
Sbjct: 164 LSDNKISD--VEPLFGLTNLGVLDLSRNKLSD--LKPLWGLTKLTMLLLNTNQISD--LK 217

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LT L +L+L    I D  +  LTGL  L  L L D ++  S L+ L GLTNL  + 
Sbjct: 218 PLANLTKLTTLDLSDNKISD--VKPLTGLTKLTELALGDNKI--SDLKPLLGLTNLTELV 273

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           L+   ISD  +  L GL+++ SL+L   +I++     +TSLTGLT L
Sbjct: 274 LNTNEISD--VTSLTGLTNITSLHLGGNKISN-----VTSLTGLTKL 313



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 132/236 (55%), Gaps = 19/236 (8%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113
           ++ L  L +LN+ + N I  SD+KPL  LT L +L++  +K++D  +  L GL  L  L+
Sbjct: 87  IQALRNLTTLNL-FANQI--SDVKPLRSLTKLTTLELVSNKISD--VKPLFGLTNLNRLD 141

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           L    ++   +  L+ L  L  L+L+  ++SD   E    + +L VL+L  N+++D  L 
Sbjct: 142 LSDNKISD--VKPLTGLTKLTELDLSDNKISD--VEPLFGLTNLGVLDLSRNKLSD--LK 195

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L GLT L  L L++  I D  L  L  L  L  L+LSD ++  S ++ L+GLT L  + 
Sbjct: 196 PLWGLTKLTMLLLNTNQISD--LKPLANLTKLTTLDLSDNKI--SDVKPLTGLTKLTELA 251

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
           L    ISD  L+ L GL++L  L L+  +I+D  + +LT LT +T L L G +I++
Sbjct: 252 LGDNKISD--LKPLLGLTNLTELVLNTNEISD--VTSLTGLTNITSLHLGGNKISN 303



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 127/262 (48%), Gaps = 30/262 (11%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           LQ +  LN+    +T+  L+ + AL +L  LNL   Q+SD   +    +  L  L L  N
Sbjct: 68  LQGVKNLNISNAEITS--LEGIQALRNLTTLNLFANQISD--VKPLRSLTKLTTLELVSN 123

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           +I+D  +  L GLTNL  L+L    I D  +  LTGL  L  L+LSD ++  S +  L G
Sbjct: 124 KISD--VKPLFGLTNLNRLDLSDNKISD--VKPLTGLTKLTELDLSDNKI--SDVEPLFG 177

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           LTNL  ++LS   +SD  L+ L GL+ L  L L+  QI+D  L  L +LT LT LDL   
Sbjct: 178 LTNLGVLDLSRNKLSD--LKPLWGLTKLTMLLLNTNQISD--LKPLANLTKLTTLDLSDN 233

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDA--------------GVKHIKDLSSLTLLNLS 331
           +I+D     L     L  L +    ++D                   I D++SLT L   
Sbjct: 234 KISDVKP--LTGLTKLTELALGDNKISDLKPLLGLTNLTELVLNTNEISDVTSLTGLTNI 291

Query: 332 QNCNLTDKTLELISGLTGLVSL 353
            + +L    +  ++ LTGL  L
Sbjct: 292 TSLHLGGNKISNVTSLTGLTKL 313



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 19/157 (12%)

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           L G+ NL   N   T     SL  +  L +L +LNL A QI+D  +  L SLT LT L+L
Sbjct: 68  LQGVKNLNISNAEIT-----SLEGIQALRNLTTLNLFANQISD--VKPLRSLTKLTTLEL 120

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
              +I+D    +     NL  L++    ++D  VK +  L+ LT L+LS N  ++D  +E
Sbjct: 121 VSNKISDVKPLF--GLTNLNRLDLSDNKISD--VKPLTGLTKLTELDLSDN-KISD--VE 173

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
            + GLT L  L++S ++++      LKPL  L  LT+
Sbjct: 174 PLFGLTNLGVLDLSRNKLSD-----LKPLWGLTKLTM 205



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 91/182 (50%), Gaps = 16/182 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+GL+ LT L    N       ++   GL NL  LDL R       L +LK L  L  L 
Sbjct: 153 LTGLTKLTELDLSDNKI---SDVEPLFGLTNLGVLDLSR-----NKLSDLKPLWGLTKLT 204

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N    SD+KPL+ LT L +L +S +K++D  +  L GL KLT L L    ++   L
Sbjct: 205 MLLLNTNQISDLKPLANLTKLTTLDLSDNKISD--VKPLTGLTKLTELALGDNKISD--L 260

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             L  L +L  L LN  ++SD      + + ++  L+LG N+I++  +  L GLT L  L
Sbjct: 261 KPLLGLTNLTELVLNTNEISD--VTSLTGLTNITSLHLGGNKISN--VTSLTGLTKLAWL 316

Query: 185 NL 186
            L
Sbjct: 317 YL 318


>gi|17546075|ref|NP_519477.1| GALA protein 4 [Ralstonia solanacearum GMI1000]
 gi|17428371|emb|CAD15058.1| type III effector protein gala6 [Ralstonia solanacearum GMI1000]
          Length = 620

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 124/264 (46%), Gaps = 6/264 (2%)

Query: 124 LDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGS--LKVLNLGFNEITDECLVHLKGLTN 180
           L++L AL   L +L + RC  S    E  + + S  LK LNL   EI  E    L    +
Sbjct: 155 LEALKALPPELEHLEIGRCTGSAISAEGLAHLASMPLKSLNLNGIEIGVEGARTLAASKS 214

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L SL+L  CGIGD     L    +++CL+LS  ++G  G + L+G   L S+NL    I 
Sbjct: 215 LVSLSLIGCGIGDRAAQALVASRSIQCLDLSVNRIGRDGAQALAGAP-LVSLNLHNNEIG 273

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           +   R LA   +L SL++    + + G  A    T L  L L G  I+  GA  L + K+
Sbjct: 274 NEGARVLATSRTLTSLDVSNNGVGNAGAEAFAGNTVLKQLSLAGGMISGDGAQALADNKS 333

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L  L++    L DAG + + D  S   L L  N    D    L   +  L SLN+S + I
Sbjct: 334 LTDLDLSNNRLGDAGAQALADSESFVSLKLGGNEIGADGAEALARNVV-LQSLNLSYNPI 392

Query: 361 TSAGLRHLKPLKNLRSLTLESCKV 384
              G+  L   K LR L L +C +
Sbjct: 393 GFWGVNALGRAK-LRKLDLCACAI 415



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 149/355 (41%), Gaps = 27/355 (7%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           N I   G +A AG   LV L+L      + G   L     L SL++   N + ++  +  
Sbjct: 247 NRIGRDGAQALAG-APLVSLNLHNNEIGNEGARVLATSRTLTSLDVS-NNGVGNAGAEAF 304

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           +G T LK L ++   ++  G   L   + LT L+L    +  A   +L+   S   L L 
Sbjct: 305 AGNTVLKQLSLAGGMISGDGAQALADNKSLTDLDLSNNRLGDAGAQALADSESFVSLKLG 364

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITD-----------------ECLVHLKGL---- 178
             ++  DG E  ++   L+ LNL +N I                    C +   G     
Sbjct: 365 GNEIGADGAEALARNVVLQSLNLSYNPIGFWGVNALGRAKLRKLDLCACAIDSDGASALA 424

Query: 179 --TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
             T+L SL L S  IGD+G   L     L  L LS   + + G + L+   +L +++LS 
Sbjct: 425 RNTSLASLYLGSNRIGDDGARALAKNSTLTLLNLSGNNIHAVGAQALASNDSLITLDLSR 484

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
            GI D     LA    L SLNL   QI  TG   L     L  LDL   RI   GA  L 
Sbjct: 485 NGIGDDGTAALACHPRLTSLNLSRNQIGSTGAQQLAKSATLAELDLSENRIGPEGAEALA 544

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--KTLELISGLTG 349
               L +L +    + +AG + + +  SLT L+  +N    D  K LE  + +TG
Sbjct: 545 RSTVLTTLNVSYNAIGEAGARALAESVSLTSLDARRNGIGEDGAKVLEANTRITG 599



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 170/415 (40%), Gaps = 52/415 (12%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           M   LS    L S+ F+    +T + +KA      L  L++ RCT   G  ++ +GL  L
Sbjct: 134 MFRQLSLYPALKSVRFK--GELTLEALKALP--PELEHLEIGRCT---GSAISAEGLAHL 186

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            S+                     LKSL ++  ++   G   L   + L  L+L GC + 
Sbjct: 187 ASMP--------------------LKSLNLNGIEIGVEGARTLAASKSLVSLSLIGCGIG 226

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
                +L A  S+  L+L+  ++  DG +  +    L  LNL  NEI +E    L     
Sbjct: 227 DRAAQALVASRSIQCLDLSVNRIGRDGAQALAG-APLVSLNLHNNEIGNEGARVLATSRT 285

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L SL++ + G+G+ G     G   LK L L+   +   G + L+   +L  ++LS   + 
Sbjct: 286 LTSLDVSNNGVGNAGAEAFAGNTVLKQLSLAGGMISGDGAQALADNKSLTDLDLSNNRLG 345

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALT-----------------------SLTGL 277
           D   + LA   S  SL L   +I   G  AL                            L
Sbjct: 346 DAGAQALADSESFVSLKLGGNEIGADGAEALARNVVLQSLNLSYNPIGFWGVNALGRAKL 405

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
             LDL    I   GA+ L    +L SL +    + D G + +   S+LTLLNLS N N+ 
Sbjct: 406 RKLDLCACAIDSDGASALARNTSLASLYLGSNRIGDDGARALAKNSTLTLLNLSGN-NIH 464

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
               + ++    L++L++S + I   G   L     L SL L   ++ +   ++L
Sbjct: 465 AVGAQALASNDSLITLDLSRNGIGDDGTAALACHPRLTSLNLSRNQIGSTGAQQL 519


>gi|428298451|ref|YP_007136757.1| small GTP-binding protein [Calothrix sp. PCC 6303]
 gi|428234995|gb|AFZ00785.1| small GTP-binding protein [Calothrix sp. PCC 6303]
          Length = 1408

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 133/452 (29%), Positives = 201/452 (44%), Gaps = 83/452 (18%)

Query: 1   MTENLSGLSNLTSLSFRRN----------------------NAITAQGMKAFAGLINLVK 38
           + E ++ LSNLT L F  N                      N IT +  +A A L NL +
Sbjct: 118 IPEAIANLSNLTQLYFNSNHISKIPELIAKLSNLRELHVSSNKIT-EIPEAIAKLSNLRE 176

Query: 39  LDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 96
           L +   + T I   + NL  L +L        N IT+   + ++ L NL+ LQ+S +K+T
Sbjct: 177 LHVSSNQITEIPEAIANLSNLRELHV----SSNQITEIP-EAIAKLINLRELQVSSNKIT 231

Query: 97  D--SGIAYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSLFY-------------LNLN 139
           +    IA L  L+KL L N  +   P   A L +L+ L  L Y             +NL 
Sbjct: 232 EIPEVIAKLTNLRKLYLRNNQITEIPEVIAKLTNLTQLD-LSYNQITKISEALAKLINLT 290

Query: 140 RCQLSDDGC----EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           +  L ++      +  +K+ +L  L+L +N+IT +    L  LTNL  L L S  I +  
Sbjct: 291 QIILHNNKITEIPDALAKLINLTQLDLSYNQIT-KIPEALAKLTNLTQLILYSNQITEIP 349

Query: 196 LVNLTGLCNLKCLELSDTQVG--SSGLRHLSGLT--------------------NLESIN 233
            V +  L NL  L+LS  Q+      L  L+ LT                    NL  I 
Sbjct: 350 EV-IAKLTNLTQLDLSYNQITKIPEALAKLTNLTQLILYSNRISEIPEALAKLINLTQII 408

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           LS+  IS+     LA L++L  L+L   QIT     AL  L  LT + L   +IT+   A
Sbjct: 409 LSYNRISEIP-EALAKLTNLTQLDLSYNQITKIP-EALAKLINLTQIILHSNKITEIPEA 466

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            L    NLR L +    +T+   + +  L++LT LNLS N  +  K  + ++ L+ L  L
Sbjct: 467 -LAKLTNLRQLYLSYNRITEIP-EALAKLTNLTQLNLSDNQII--KIPKALAKLSNLTQL 522

Query: 354 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           +++ ++IT      L  L NL  L L + ++T
Sbjct: 523 DLNRNKITEIP-EALAKLTNLTQLYLRNNRIT 553



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 126/438 (28%), Positives = 199/438 (45%), Gaps = 77/438 (17%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLM 58
           ++E L+ L NLT +    NN IT +   A A LINL +LDL   + T+I   L  L  L 
Sbjct: 279 ISEALAKLINLTQIILH-NNKIT-EIPDALAKLINLTQLDLSYNQITKIPEALAKLTNLT 336

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT--DSGIAYLKGLQKLTLLN--L 114
           +L    I + N IT+   + ++ LTNL  L +S +++T     +A L  L +L L +  +
Sbjct: 337 QL----ILYSNQITEIP-EVIAKLTNLTQLDLSYNQITKIPEALAKLTNLTQLILYSNRI 391

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD----- 169
              P   A L +L+ +     L+ NR     +  E  +K+ +L  L+L +N+IT      
Sbjct: 392 SEIPEALAKLINLTQI----ILSYNRI---SEIPEALAKLTNLTQLDLSYNQITKIPEAL 444

Query: 170 -------ECLVH----------LKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLEL 210
                  + ++H          L  LTNL  L L    I +  E L  LT   NL  L L
Sbjct: 445 AKLINLTQIILHSNKITEIPEALAKLTNLRQLYLSYNRITEIPEALAKLT---NLTQLNL 501

Query: 211 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA- 269
           SD Q+     + L+ L+NL  ++L+   I++     LA L++L  L L   +IT+   A 
Sbjct: 502 SDNQIIKIP-KALAKLSNLTQLDLNRNKITEIP-EALAKLTNLTQLYLRNNRITEIPEAL 559

Query: 270 ----------------------ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
                                 A+T LT LT L+L  ++IT+     +    NL  L + 
Sbjct: 560 AKLTNLTQLDLGTNYNISEIPEAITKLTNLTQLNLTSSQITEIPEV-IAKLTNLTQLNLT 618

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
              + +   + I  L++LT L L+   N   +  E I+ LT L  LN+++++IT      
Sbjct: 619 SNQIAEIP-EAIAKLTNLTQLILT--SNQITEIPEAIAKLTNLTQLNLTSNQITKIP-EA 674

Query: 368 LKPLKNLRSLTLESCKVT 385
           +  L NL  L L   ++T
Sbjct: 675 IAKLTNLTQLILSYNQIT 692



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 137/293 (46%), Gaps = 43/293 (14%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLM 58
           + E L+ L+NLT L+   N  I     KA A L NL +LDL R   T I   L  L  L 
Sbjct: 486 IPEALAKLTNLTQLNLSDNQIIKIP--KALAKLSNLTQLDLNRNKITEIPEALAKLTNLT 543

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           +L   N    N IT+   + L+ LTNL  L        D G  Y          N+   P
Sbjct: 544 QLYLRN----NRITEIP-EALAKLTNLTQL--------DLGTNY----------NISEIP 580

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
                 ++++ L +L  LNL   Q+++   E  +K+ +L  LNL  N+I  E    +  L
Sbjct: 581 ------EAITKLTNLTQLNLTSSQITE-IPEVIAKLTNLTQLNLTSNQIA-EIPEAIAKL 632

Query: 179 TNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
           TNL  L L S  I +  E +  LT L  L       T++  +    ++ LTNL  + LS+
Sbjct: 633 TNLTQLILTSNQITEIPEAIAKLTNLTQLNLTSNQITKIPEA----IAKLTNLTQLILSY 688

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             I++     +A L++L  L L + QIT+    A+T LT LT LDL   RI++
Sbjct: 689 NQITEIP-EAIAKLTNLTQLILTSNQITEIP-DAITKLTNLTQLDLSYNRISE 739


>gi|290995863|ref|XP_002680502.1| predicted protein [Naegleria gruberi]
 gi|284094123|gb|EFC47758.1| predicted protein [Naegleria gruberi]
          Length = 350

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 108/220 (49%), Gaps = 1/220 (0%)

Query: 149 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
           + F  +  L   ++ +  + D     +  +T L SLN+ +     + +     + NL CL
Sbjct: 119 DAFKLMKGLTTFDISYTYVHDREAKIISEMTQLTSLNVSNSIRIKKSIAYFREMNNLTCL 178

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
            + +  +G    +H+S +  L  +++   GI     + ++ L  L  L++ +  I + G 
Sbjct: 179 NIGNNGIGVECAKHVSEMKQLTILHICGNGIKFEGAKFISELQQLTKLDVSSNNIGEQGA 238

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
             ++ L  LT+LD++  RI   GA ++   K L  L I    +   G K+I ++  L  L
Sbjct: 239 KYISQLKQLTNLDIYSNRIGAQGAKHISEMKQLTRLNISYNDINVEGAKYISEMKQLINL 298

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
           N+++N N+ D+    ISG+  L +L + N+ I++AG +++
Sbjct: 299 NITKN-NIGDEGARHISGMNQLTNLFIGNNNISNAGFQNI 337



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 120/251 (47%), Gaps = 19/251 (7%)

Query: 37  VKLDLERCTRIHGGLV-NLKGLMKLESLN--IKWCNC----------------ITDSDMK 77
           V++D+ + +R+ G  + N+  +  L ++N  I++ +                 + D + K
Sbjct: 84  VRIDIGKMSRVQGQFLENIASVKALNAINHLIQYRDAFKLMKGLTTFDISYTYVHDREAK 143

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
            +S +T L SL +S S      IAY + +  LT LN+    +   C   +S +  L  L+
Sbjct: 144 IISEMTQLTSLNVSNSIRIKKSIAYFREMNNLTCLNIGNNGIGVECAKHVSEMKQLTILH 203

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           +    +  +G +  S++  L  L++  N I ++   ++  L  L +L++ S  IG +G  
Sbjct: 204 ICGNGIKFEGAKFISELQQLTKLDVSSNNIGEQGAKYISQLKQLTNLDIYSNRIGAQGAK 263

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
           +++ +  L  L +S   +   G +++S +  L ++N++   I D   R ++G++ L +L 
Sbjct: 264 HISEMKQLTRLNISYNDINVEGAKYISEMKQLINLNITKNNIGDEGARHISGMNQLTNLF 323

Query: 258 LDARQITDTGL 268
           +    I++ G 
Sbjct: 324 IGNNNISNAGF 334



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 107/228 (46%), Gaps = 7/228 (3%)

Query: 154 IGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
           I S+K LN   N +    +    +KGLT   + ++    + D     ++ +  L  L +S
Sbjct: 102 IASVKALN-AINHLIQYRDAFKLMKGLT---TFDISYTYVHDREAKIISEMTQLTSLNVS 157

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
           ++      + +   + NL  +N+   GI     + ++ +  L  L++    I   G   +
Sbjct: 158 NSIRIKKSIAYFREMNNLTCLNIGNNGIGVECAKHVSEMKQLTILHICGNGIKFEGAKFI 217

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
           + L  LT LD+    I + GA Y+   K L +L+I    +   G KHI ++  LT LN+S
Sbjct: 218 SELQQLTKLDVSSNNIGEQGAKYISQLKQLTNLDIYSNRIGAQGAKHISEMKQLTRLNIS 277

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
            N ++  +  + IS +  L++LN++ + I   G RH+  +  L +L +
Sbjct: 278 YN-DINVEGAKYISEMKQLINLNITKNNIGDEGARHISGMNQLTNLFI 324


>gi|343417958|emb|CCD19884.1| leucine-rich repeat region [Trypanosoma vivax Y486]
          Length = 389

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 129/390 (33%), Positives = 193/390 (49%), Gaps = 47/390 (12%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS LS+L  L       IT   +   + L +L  LDL  CT I   +  L  L  L +L+
Sbjct: 16  LSVLSSLRMLDLSHCTGIT--DVSPLSVLSSLRMLDLSHCTGI-TDVSPLSELSSLRTLD 72

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           +  C  ITD  + PLS L++L++L +S C+ +TD  ++ L  L  L +L+L  C      
Sbjct: 73  LSHCTGITD--VSPLSKLSSLRTLDLSHCTAITD--VSPLSKLSSLRMLDLSHCTGITD- 127

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE 182
           +  LS L SL  L+L+ C    D     S++ SL+ L+L     ITD  +  L  L++L 
Sbjct: 128 VSPLSKLSSLRTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLR 184

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN---------LESIN 233
           +L+L  C     G+ +++ L  L  L   D       L H +G+T+         L+ + 
Sbjct: 185 TLDLSHC----TGITDVSPLSKLSSLHELD-------LSHCTGITDVSLLYRFFGLDKLG 233

Query: 234 LSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDS 290
           LS  TGI+D S   L+ LS L++L+L     ITD  ++ L+ L GL  LDL     ITD 
Sbjct: 234 LSHCTGITDVS--PLSKLSGLRTLDLSHCTGITD--VSPLSKLGGLCELDLSHCTGITD- 288

Query: 291 GAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
             + L    +LR L++    G+TD  V  +  LSSL  L+LS    +TD  +  +S L+G
Sbjct: 289 -VSPLSKLSSLRKLDLSHCTGITD--VSPLSVLSSLRTLDLSHCRGITD--VSPLSTLSG 343

Query: 350 LVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           L  L++S      +GL  L  L  LR L+ 
Sbjct: 344 LEVLDLSGCTGVRSGLESLCSLSFLRYLSF 373



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 111/313 (35%), Positives = 160/313 (51%), Gaps = 31/313 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL- 63
           LS LS+L +L      AIT   +   + L +L  LDL  CT    G+ ++  L KL SL 
Sbjct: 85  LSKLSSLRTLDLSHCTAIT--DVSPLSKLSSLRMLDLSHCT----GITDVSPLSKLSSLR 138

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
            +   +C   +D+ PLS L++L++L +S C+ +TD  ++ L  L  L  L+L  C     
Sbjct: 139 TLDLSHCTGITDVSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD 196

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLT 179
            +  LS L SL  L+L+ C    D    +   G  K   LG +    ITD  +  L  L+
Sbjct: 197 -VSPLSKLSSLHELDLSHCTGITDVSLLYRFFGLDK---LGLSHCTGITD--VSPLSKLS 250

Query: 180 NLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF- 236
            L +L+L  C GI D   L  L GLC L   +LS    G + +  LS L++L  ++LS  
Sbjct: 251 GLRTLDLSHCTGITDVSPLSKLGGLCEL---DLSHCT-GITDVSPLSKLSSLRKLDLSHC 306

Query: 237 TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
           TGI+D S   L+ LSSL++L+L   R ITD  ++ L++L+GL  LDL G     SG   L
Sbjct: 307 TGITDVS--PLSVLSSLRTLDLSHCRGITD--VSPLSTLSGLEVLDLSGCTGVRSGLESL 362

Query: 296 RNFKNLRSLEICG 308
            +   LR L   G
Sbjct: 363 CSLSFLRYLSFLG 375



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 18/166 (10%)

Query: 216 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS 273
           G + +  LS L++L  ++LS  TGI+D S   L+ LSSL+ L+L     ITD  ++ L+ 
Sbjct: 9   GITDVSPLSVLSSLRMLDLSHCTGITDVS--PLSVLSSLRMLDLSHCTGITD--VSPLSE 64

Query: 274 LTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 331
           L+ L  LDL     ITD   + L    +LR+L++     +TD  V  +  LSSL +L+LS
Sbjct: 65  LSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTAITD--VSPLSKLSSLRMLDLS 120

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
               +TD  +  +S L+ L +L++S+      G+  + PL  L SL
Sbjct: 121 HCTGITD--VSPLSKLSSLRTLDLSH----CTGITDVSPLSELSSL 160


>gi|374293090|ref|YP_005040125.1| hypothetical protein AZOLI_2723 [Azospirillum lipoferum 4B]
 gi|357425029|emb|CBS87910.1| Conserved protein of unknown function; Leucine-rich repeat domain
           [Azospirillum lipoferum 4B]
          Length = 1026

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 165/329 (50%), Gaps = 44/329 (13%)

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAAC-LD 125
           C+  + SD+ PL+GL +L+ L  S + V+D S +  L+GLQ+L       C +T+   L 
Sbjct: 3   CSLTSVSDLSPLNGLNSLQQLNCSGTSVSDLSPLNGLRGLQQLD------CSLTSVSDLS 56

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
            LS L  L  L+ +   +SD      S +  L+ L+     ++D  L  L GL+ L+ L+
Sbjct: 57  PLSGLSDLQQLSCSSTSVSD--LSPLSGLSGLQQLDCSSTSVSD--LFPLSGLSGLQQLS 112

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
             S  + D  L  L+GL  L+ L  S T V  S L  LSGL  L+ ++ S T +SD  L 
Sbjct: 113 CSSTSVSD--LFPLSGLSGLQELSCSGTSV--SDLSPLSGLNGLQQLDCSLTSVSD--LS 166

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
            L+GLS L+ L+     ++D  L+ L+ L+GL  L   G  ++D   + L     L+ L 
Sbjct: 167 PLSGLSGLQELSCSGTSVSD--LSPLSGLSGLQELSCSGTSVSD--LSPLSGLSGLQQLY 222

Query: 306 ICGGGLTD-------AGVKH-------IKDLSSLTLLNLSQN--CNLTDKT-LELISGLT 348
             G  ++D       +G++        + DLS L+ L+  Q   C++T  + L  +SGL+
Sbjct: 223 CSGTSVSDLSPLSGLSGLQQLSCSGTSVNDLSPLSGLSGLQQLYCSVTSVSDLSPLSGLS 282

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
           GL  L+ S++ ++      L PL  L SL
Sbjct: 283 GLQELSCSDTSVSD-----LFPLSGLSSL 306



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 159/329 (48%), Gaps = 35/329 (10%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           L  L GL  L+ L+   C+  + SD+ PLSGL++L+  Q+SCS  + S ++ L GL  L 
Sbjct: 33  LSPLNGLRGLQQLD---CSLTSVSDLSPLSGLSDLQ--QLSCSSTSVSDLSPLSGLSGLQ 87

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
            L+     V+   L  LS L  L  L+ +   +SD      S +  L+ L+     ++D 
Sbjct: 88  QLDCSSTSVSD--LFPLSGLSGLQQLSCSSTSVSD--LFPLSGLSGLQELSCSGTSVSD- 142

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
            L  L GL  L+ L+     + D  L  L+GL  L+ L  S T V  S L  LSGL+ L+
Sbjct: 143 -LSPLSGLNGLQQLDCSLTSVSD--LSPLSGLSGLQELSCSGTSV--SDLSPLSGLSGLQ 197

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
            ++ S T +SD  L  L+GLS L+ L      ++D  L+ L+ L+GL  L   G  + D 
Sbjct: 198 ELSCSGTSVSD--LSPLSGLSGLQQLYCSGTSVSD--LSPLSGLSGLQQLSCSGTSVND- 252

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
             + L     L+ L  C        V  + DLS L+ L+  Q  + +D ++  +  L+GL
Sbjct: 253 -LSPLSGLSGLQQL-YCS-------VTSVSDLSPLSGLSGLQELSCSDTSVSDLFPLSGL 303

Query: 351 VSL------NVSNSRITSAGLRHLKPLKN 373
            SL      NV    I +AG+   +P  N
Sbjct: 304 SSLQELYLYNVEIPGIPTAGVLSQEPDDN 332



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 18/138 (13%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLES 62
           +LS LS L+ L     +  +   +   +GL  L +L    C+   G  VN L  L  L  
Sbjct: 208 DLSPLSGLSGLQQLYCSGTSVSDLSPLSGLSGLQQLS---CS---GTSVNDLSPLSGLSG 261

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLE--GCPV 119
           L   +C+  + SD+ PLSGL+ L+ L  S + V+D   ++ L  LQ+L L N+E  G P 
Sbjct: 262 LQQLYCSVTSVSDLSPLSGLSGLQELSCSDTSVSDLFPLSGLSSLQELYLYNVEIPGIPT 321

Query: 120 TAA--------CLDSLSA 129
                      CLD L A
Sbjct: 322 AGVLSQEPDDNCLDRLRA 339


>gi|71754651|ref|XP_828240.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|70833626|gb|EAN79128.1| hypothetical protein Tb11.53.0001 [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 1399

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 161/350 (46%), Gaps = 12/350 (3%)

Query: 36  LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 95
           +V L+L  C ++   + ++  L  L  LN+  C  I ++  + L  L  L    +S + +
Sbjct: 538 IVSLNLSHCWKV-TSVFHISALETLNELNLSDCIRI-NAGWEALEKLQQLHVAILSNTHI 595

Query: 96  TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 155
           TD  I++    ++L  L+L  C      + SLS + +L  LNL+ C     G     ++ 
Sbjct: 596 TDRDISHFSKCKELVTLDLSFCDELFD-ITSLSNITTLEDLNLDNCSKIRKGLSVLGELP 654

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ 214
            L+VLN+    +T+  +  L    +   L LD+C G+ D  +  L+ L  LK L L    
Sbjct: 655 RLRVLNVKGVHLTNSVIGSLGNGKSFVKLILDNCKGLSD--VTFLSSLSTLKELNLHHCD 712

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-DARQITDTGLAALT 272
             +SG+  L  L  L  ++L +T I + SL  +   SS L SLNL   ++I  T ++A+ 
Sbjct: 713 AVTSGIGTLGRLLQLRVLDLGWTKIDNNSLEDICACSSPLVSLNLSHCKEI--TSISAIA 770

Query: 273 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
           SL  L  L++       SG         LR   +    + D  ++HI +  SL  LNL+ 
Sbjct: 771 SLNALEKLNIDNCCHVTSGWNVFGTLHQLRVAVLSNTRINDENIRHISECKSLNTLNLAF 830

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
             ++TD T   +S +T L  LN+        G+  L  L  LR L  + C
Sbjct: 831 CNDITDIT--ALSNITMLRELNIDWCFNIEKGVEALGKLPKLRELDAKKC 878



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 176/378 (46%), Gaps = 24/378 (6%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNL 85
           + + + +  L  L+L+ C++I  GL  L  L +L  LN+K  + +T+S +  L +G + +
Sbjct: 623 ITSLSNITTLEDLNLDNCSKIRKGLSVLGELPRLRVLNVKGVH-LTNSVIGSLGNGKSFV 681

Query: 86  KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 145
           K +  +C  ++D  + +L  L  L  LNL  C    + + +L  L  L  L+L   ++ +
Sbjct: 682 KLILDNCKGLSD--VTFLSSLSTLKELNLHHCDAVTSGIGTLGRLLQLRVLDLGWTKIDN 739

Query: 146 DGCEKFSKIGS-LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
           +  E      S L  LNL    EIT   +  +  L  LE LN+D+C     G      L 
Sbjct: 740 NSLEDICACSSPLVSLNLSHCKEITS--ISAIASLNALEKLNIDNCCHVTSGWNVFGTLH 797

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ 262
            L+   LS+T++    +RH+S   +L ++NL+F   I+D  +  L+ ++ L+ LN+D   
Sbjct: 798 QLRVAVLSNTRINDENIRHISECKSLNTLNLAFCNDITD--ITALSNITMLRELNIDWCF 855

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGV 316
             + G+ AL  L  L  LD   A+   +   +++       FK+L  L +   G     V
Sbjct: 856 NIEKGVEALGKLPKLRELD---AKKCGTSVRWMQQYPYNTLFKSLVKLNL-ENGRESFCV 911

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
             +   + +  L L + C      L  IS L  L  LN+ + R+    L  +   K+L+S
Sbjct: 912 GTLSSTAIVEELLLGRACE--PYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQS 969

Query: 377 LTLESCKVTANDIKRLQS 394
           L + +C     DI  L S
Sbjct: 970 LNVSNCNYIT-DISALSS 986



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 188/403 (46%), Gaps = 28/403 (6%)

Query: 3    ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE- 61
            E +S   +L SL+    N IT   + A + L  L +L++  C RI  G    + L +L  
Sbjct: 959  EGISQSKSLQSLNVSNCNYIT--DISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRV 1016

Query: 62   -SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             +L++ W   +T+  ++ LSG  NL++L++ C     S I  +  ++ L  L ++ C   
Sbjct: 1017 ATLSVTW---VTNEGIRLLSGCKNLRNLELYCCGDV-SNIEPINNIKSLEELTIQNCHNI 1072

Query: 121  AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLT 179
               L  +  L  L  L L + Q +        +  SL  L + G  E+ D     +K ++
Sbjct: 1073 NEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCD-----IKLIS 1127

Query: 180  NLESLNLDSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
            N+ +L       GD  L+N  G    L  L  L LS   +G++    +  + +L+S++++
Sbjct: 1128 NIATLKELKIAHGDR-LLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDIT 1186

Query: 236  FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAY 294
             +      +  ++ L++L+ LNL       +G  ALT+L  L  L+L   R+T S G  Y
Sbjct: 1187 HS-FELPDIYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTSYGGYY 1245

Query: 295  LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
            +   K+L +L +    +TDA    + D+ +L  L++ + C    +    +  L  L  LN
Sbjct: 1246 ISRCKSLITLNLESCDMTDASC--LADIKTLEELHIGK-CEELTRGFSALFTLPQLRILN 1302

Query: 355  VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI---KRLQS 394
            + +S IT   LR ++    +  L L  CK   NDI   +R++S
Sbjct: 1303 LMDSLITDEDLREIQLSHTIEDLNLSYCK-ELNDITPVRRIKS 1344



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 157/354 (44%), Gaps = 48/354 (13%)

Query: 76   MKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
            + P+S L  L+ L +   +V D    GI+  K LQ L   N+  C      + +LS+L +
Sbjct: 934  LPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSL---NVSNCNYITD-ISALSSLST 989

Query: 133  LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
            L  LN+N C     G E F  +  L+V  L    +T+E +  L G  NL +L L  CG  
Sbjct: 990  LEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRLLSGCKNLRNLELYCCG-- 1047

Query: 193  DEGLVNLTGLCNLKCLELSDTQ-----------VGSSGLRHLSGLTNLESINLSFTGISD 241
               + N+  + N+K LE    Q           VG      +  L  L+S   S + + +
Sbjct: 1048 --DVSNIEPINNIKSLEELTIQNCHNINEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGE 1105

Query: 242  GS---------------LRKLAGLSSLKSLNLDA--RQITDTGLAALTSLTGLTHLDLFG 284
                             ++ ++ +++LK L +    R + D G   L  L  L  L L  
Sbjct: 1106 SKSLVKLTIEGPEELCDIKLISNIATLKELKIAHGDRLLNDVG--DLGKLPWLHVLTLSH 1163

Query: 285  ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
              + ++    +   ++L+SL+I         + HI +L++L  LNLS  C       E +
Sbjct: 1164 FNMGNTCFESVCKIRSLKSLDI-THSFELPDIYHISNLTALEELNLS-GCYHIISGWEAL 1221

Query: 345  SGLTGLVSLNVSNSRI-TSAGLRHLKPLKNLRSLTLESCKVTA----NDIKRLQ 393
            + L  L  LN+S++R+ TS G  ++   K+L +L LESC +T      DIK L+
Sbjct: 1222 TALPRLRVLNLSSTRVTTSYGGYYISRCKSLITLNLESCDMTDASCLADIKTLE 1275



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 147/328 (44%), Gaps = 40/328 (12%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           LE LN+   +CI  +D+ PLS  T ++ L ++ C ++T  GI+ +  L KL +L+++   
Sbjct: 325 LERLNLS--HCIQLTDINPLSNATAIQELNLNRCHRIT-QGISVVWELPKLRVLHMKDMH 381

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           ++ + LDS+    SL  L++  C                     GF ++T      L   
Sbjct: 382 LSESSLDSVGTSESLVKLSIENCA--------------------GFGDMT-----LLSSF 416

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFT 237
             LE LN+  C     G+  L  L  L+ L + +  + S G   +    +L  + + S T
Sbjct: 417 VALEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSIGFTGIGASKSLLQLTIESTT 476

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
           G+SD  +  LA + +L+ L+L      D G+  L +L  L  LDL G   T++ +  LR 
Sbjct: 477 GLSD--VEALANILTLEKLSLLGCNGIDAGIGCLGNLPQLKVLDLSG---TNTDSDSLRG 531

Query: 298 F---KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
               + + SL +         V HI  L +L  LNLS +C   +   E +  L  L    
Sbjct: 532 LCVSQTIVSLNL-SHCWKVTSVFHISALETLNELNLS-DCIRINAGWEALEKLQQLHVAI 589

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESC 382
           +SN+ IT   + H    K L +L L  C
Sbjct: 590 LSNTHITDRDISHFSKCKELVTLDLSFC 617



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 159/353 (45%), Gaps = 20/353 (5%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 96
           +L+L RC RI  G+  +  L KL  L++K  + +++S +  +    +L  L I  C+   
Sbjct: 350 ELNLNRCHRITQGISVVWELPKLRVLHMKDMH-LSESSLDSVGTSESLVKLSIENCAGFG 408

Query: 97  DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 156
           D  +  L     L  LN++ C    + +  L  L  L  LN+    +S  G   F+ IG+
Sbjct: 409 D--MTLLSSFVALEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSIG---FTGIGA 463

Query: 157 LK-VLNLGFNEITDECLVHLKGLTN---LESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 212
            K +L L     T   L  ++ L N   LE L+L  C   D G+  L  L  LK L+LS 
Sbjct: 464 SKSLLQLTIESTTG--LSDVEALANILTLEKLSLLGCNGIDAGIGCLGNLPQLKVLDLSG 521

Query: 213 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 272
           T   S  LR L     + S+NLS       S+  ++ L +L  LNL      + G  AL 
Sbjct: 522 TNTDSDSLRGLCVSQTIVSLNLSHCW-KVTSVFHISALETLNELNLSDCIRINAGWEALE 580

Query: 273 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA--GVKHIKDLSSLTLLNL 330
            L  L    L    ITD   ++    K L +L++      D    +  + ++++L  LNL
Sbjct: 581 KLQQLHVAILSNTHITDRDISHFSKCKELVTLDL---SFCDELFDITSLSNITTLEDLNL 637

Query: 331 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
             NC+   K L ++  L  L  LNV    +T++ +  L   K+   L L++CK
Sbjct: 638 -DNCSKIRKGLSVLGELPRLRVLNVKGVHLTNSVIGSLGNGKSFVKLILDNCK 689



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 51   LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKL 109
            + ++  L  LE LN+  C  I  S  + L+ L  L+ L +S ++VT S G  Y+   + L
Sbjct: 1194 IYHISNLTALEELNLSGCYHII-SGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKSL 1252

Query: 110  TLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
              LNLE C +T A+CL  +  L  L   ++ +C+    G      +  L++LNL  + IT
Sbjct: 1253 ITLNLESCDMTDASCLADIKTLEEL---HIGKCEELTRGFSALFTLPQLRILNLMDSLIT 1309

Query: 169  DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
            DE L  ++    +E LNL  C    + L ++T +  +K ++  D    S G
Sbjct: 1310 DEDLREIQLSHTIEDLNLSYC----KELNDITPVRRIKSIKKMDLHRSSEG 1356



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 103/210 (49%), Gaps = 6/210 (2%)

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
           ++ LK L  L+ L L S  I D  + +L  +  L+ L ++DT +  + ++ +S LTNL+ 
Sbjct: 174 MISLKRLHMLKRLYLKSNNIDDNDVSHLFNIVTLEDLVVADT-MQLTNIKGISRLTNLKC 232

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           +  ++T I D  + ++   ++L  L++ +   +TD  +  ++ L  L  L+L        
Sbjct: 233 LEFNYTSIDDSCIEEICECATLSKLSVSECNSLTD--VTPISQLAALEELNLSNCYHITK 290

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
           G   L     LR+L++ G  + D  +K + D   L  LNLS    LTD  +  +S  T +
Sbjct: 291 GIGALVRLLRLRALDLSGVSVEDNFLKDLCDCGPLERLNLSHCIQLTD--INPLSNATAI 348

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
             LN++     + G+  +  L  LR L ++
Sbjct: 349 QELNLNRCHRITQGISVVWELPKLRVLHMK 378


>gi|290980344|ref|XP_002672892.1| predicted protein [Naegleria gruberi]
 gi|284086472|gb|EFC40148.1| predicted protein [Naegleria gruberi]
          Length = 283

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 79/151 (52%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L SLN++   IG EG   ++G+  L  L +S   +G  G + +S +  L SIN+S+ 
Sbjct: 131 MKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINISYN 190

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I     + ++ +  L SLN+    I DTG   ++ +  LT LD++  RI   GA Y+  
Sbjct: 191 RICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKYISE 250

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
            K L SL+I G  + D  VK I ++  LT L
Sbjct: 251 MKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 1/155 (0%)

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           ++ +  L  L ++   +G+ G + +SG+  L S+N+S+  I D   + ++ +  L S+N+
Sbjct: 128 ISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINI 187

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
              +I   G   ++ +  LT L++    I D+GA ++   K L SL+I    +   G K+
Sbjct: 188 SYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKY 247

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
           I ++  LT L++  N  + D+ ++LIS +  L SL
Sbjct: 248 ISEMKQLTSLDIGGN-QIGDEEVKLISEMKQLTSL 281



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           ++ +  L SLN++   I   G   ++ +  LT L++    I D GA  +   K L S+ I
Sbjct: 128 ISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINI 187

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
               +   G K I ++  LT LN++ N  + D   + ISG+  L SL++ N+RI   G +
Sbjct: 188 SYNRICGEGAKFISEMKQLTSLNIANNS-IGDTGAKFISGMKELTSLDIYNNRIGREGAK 246

Query: 367 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 405
           ++  +K L SL +   ++   ++K +   ++  L S R 
Sbjct: 247 YISEMKQLTSLDIGGNQIGDEEVKLIS--EMKQLTSLRK 283



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 81/155 (52%)

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161
           ++  +++LT LN+ G  + A     +S +  L  LN++   + D G +  S++  L  +N
Sbjct: 127 FISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISIN 186

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
           + +N I  E    +  +  L SLN+ +  IGD G   ++G+  L  L++ + ++G  G +
Sbjct: 187 ISYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAK 246

Query: 222 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
           ++S +  L S+++    I D  ++ ++ +  L SL
Sbjct: 247 YISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 75/154 (48%)

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           +S +  L  LN+N   +  +G +  S +  L  LN+ +N I D+    +  +  L S+N+
Sbjct: 128 ISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINI 187

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
               I  EG   ++ +  L  L +++  +G +G + +SG+  L S+++    I     + 
Sbjct: 188 SYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKY 247

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           ++ +  L SL++   QI D  +  ++ +  LT L
Sbjct: 248 ISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281



 Score = 45.4 bits (106), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 29/180 (16%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S +  LTSL+    N I A+G K                         + G+ +L SLN
Sbjct: 128 ISEMKELTSLNIN-GNVIGAEGAKF------------------------ISGMKQLTSLN 162

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I + N I D   K +S +  L S+ IS +++   G  ++  +++LT LN+    +     
Sbjct: 163 ISY-NVIGDKGAKLISEMKQLISINISYNRICGEGAKFISEMKQLTSLNIANNSIGDTGA 221

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTNL 181
             +S +  L  L++   ++  +G +  S++  L  L++G N+I DE    +  +K LT+L
Sbjct: 222 KFISGMKELTSLDIYNNRIGREGAKYISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281



 Score = 42.4 bits (98), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 25/176 (14%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SLNI   N I     K +SG+  L SL IS + + D G                 
Sbjct: 131 MKELTSLNIN-GNVIGAEGAKFISGMKQLTSLNISYNVIGDKG----------------- 172

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
                A L  +S +  L  +N++  ++  +G +  S++  L  LN+  N I D     + 
Sbjct: 173 -----AKL--ISEMKQLISINISYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFIS 225

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
           G+  L SL++ +  IG EG   ++ +  L  L++   Q+G   ++ +S +  L S+
Sbjct: 226 GMKELTSLDIYNNRIGREGAKYISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281


>gi|419761284|ref|ZP_14287540.1| internalin-A [Thermosipho africanus H17ap60334]
 gi|407513590|gb|EKF48487.1| internalin-A [Thermosipho africanus H17ap60334]
          Length = 598

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 141/272 (51%), Gaps = 27/272 (9%)

Query: 52  VNLKGLMKLESLNIKWCNCITDSDMKPLSGL---TNLKSLQISCSKVTDSGIAYLKGLQK 108
           + ++ + +LE+L++ +      S ++ LSGL    NL+SL +S S+V D  ++ L  L K
Sbjct: 41  ITVQDMWELENLSLSF------SSVRDLSGLEYAVNLESLDLSNSEVPD--LSPLAKLPK 92

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L  L+L GC +       L  L +L  L L+  ++SD      +K   L++L+L  N I+
Sbjct: 93  LVKLDLSGCGIEDLS--LLPNLPNLISLRLSGNEISD--ISPLTKFSKLRMLDLSSNIIS 148

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           D  +  LK L NLE LNL    I D  +  L+ L  LK L+LS  ++  S +  L+ LTN
Sbjct: 149 D--ISPLKDLPNLEELNLSVNKISD--ITPLSNLTKLKRLDLSYNRI--SDISSLTNLTN 202

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           LE + LS+  ISD S   LA L +L  L+L   +I+D  ++ L  LT L  LDL    I+
Sbjct: 203 LEELVLSYNEISDIS--PLANLPNLAGLDLSNNEISD--ISPLKDLTNLELLDLAENEIS 258

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
           D   + L N  +LR L +         +  I+
Sbjct: 259 D--ISLLFNLTSLRELYVYPKDFKMKMIMFIE 288



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 180/424 (42%), Gaps = 99/424 (23%)

Query: 41  LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SG 99
           L+  + I   +  LK L  LE LN+   N I  SD+ PLS LT LK L +S ++++D S 
Sbjct: 140 LDLSSNIISDISPLKDLPNLEELNLS-VNKI--SDITPLSNLTKLKRLDLSYNRISDISS 196

Query: 100 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 159
           +  L  L++L L   E   ++      L+ L +L  L+L+  ++SD        + +L++
Sbjct: 197 LTNLTNLEELVLSYNEISDISP-----LANLPNLAGLDLSNNEISD--ISPLKDLTNLEL 249

Query: 160 LNLGFNEITD-----------ECLVHLKGL-------------------------TNLES 183
           L+L  NEI+D           E  V+ K                              E 
Sbjct: 250 LDLAENEISDISLLFNLTSLRELYVYPKDFKMKMIMFIEKYEDVDEDIDYEDIDEDTFED 309

Query: 184 LNLDS------------CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
           ++LD+              I +E +VN     NL+       ++       +  +  LE+
Sbjct: 310 IDLDNDEYIDVDIDEYIEDIDEETVVNFND-SNLEEAVREALKIEEDEDITVQDMWELEN 368

Query: 232 INLSFTGISDGSLRKLAGLS---SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           ++LSF+     S+R L+GL    +L+SL+L   ++ D  L+ L  L  L  LDL G  I 
Sbjct: 369 LSLSFS-----SVRDLSGLEYAVNLESLDLSNSEVPD--LSPLAKLPKLVKLDLSGCGIE 421

Query: 289 D--------------------SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
           D                    S  + L  F  LR L++    ++D  +  +  L+ L  L
Sbjct: 422 DLSLLPNLPNLISLRLSGNEISDISPLTKFSKLRMLDLSSNIISD--ISPLAKLTKLRFL 479

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           +L  N  ++D  +  ++ LT L  L+ S +++    +  L  L  LR L L+  K+  ND
Sbjct: 480 DLYAN-EVSD--VSPLAKLTKLRVLDFSQNKVN--DISPLVKLTKLRVLELQYNKI--ND 532

Query: 389 IKRL 392
           I  L
Sbjct: 533 ISPL 536



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 122/256 (47%), Gaps = 25/256 (9%)

Query: 40  DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-S 98
           D++  T ++    NL+  ++ E+L I+    IT  DM        L++L +S S V D S
Sbjct: 328 DIDEETVVNFNDSNLEEAVR-EALKIEEDEDITVQDM------WELENLSLSFSSVRDLS 380

Query: 99  GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
           G+ Y   L+ L L N E        L  L+ L  L  L+L+ C + D        + +L 
Sbjct: 381 GLEYAVNLESLDLSNSE-----VPDLSPLAKLPKLVKLDLSGCGIED--LSLLPNLPNLI 433

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
            L L  NEI+D  +  L   + L  L+L S  I D  +  L  L  L+ L+L   +V  S
Sbjct: 434 SLRLSGNEISD--ISPLTKFSKLRMLDLSSNIISD--ISPLAKLTKLRFLDLYANEV--S 487

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
            +  L+ LT L  ++ S   ++D S   L  L+ L+ L L   +I D  ++ L++LT L 
Sbjct: 488 DVSPLAKLTKLRVLDFSQNKVNDIS--PLVKLTKLRVLELQYNKIND--ISPLSNLTNLI 543

Query: 279 HLDLFGARITDSGAAY 294
            LDL G +I+D    +
Sbjct: 544 GLDLTGNKISDISPLF 559



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 118/257 (45%), Gaps = 49/257 (19%)

Query: 4   NLSGLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           +LSGL    NL SL    +       +   A L  LVKLDL  C    G           
Sbjct: 61  DLSGLEYAVNLESLDLSNSEV---PDLSPLAKLPKLVKLDLSGC----GIEDLSLLPNLP 113

Query: 61  ESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
             ++++   N I  SD+ PL+  + L+ L +S + ++D  I+ LK L      NLE    
Sbjct: 114 NLISLRLSGNEI--SDISPLTKFSKLRMLDLSSNIISD--ISPLKDLP-----NLEE--- 161

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
                           LNL+  ++SD      S +  LK L+L +N I+D  +  L  LT
Sbjct: 162 ----------------LNLSVNKISD--ITPLSNLTKLKRLDLSYNRISD--ISSLTNLT 201

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           NLE L L    I D  +  L  L NL  L+LS+ ++  S +  L  LTNLE ++L+   I
Sbjct: 202 NLEELVLSYNEISD--ISPLANLPNLAGLDLSNNEI--SDISPLKDLTNLELLDLAENEI 257

Query: 240 SDGSLRKLAGLSSLKSL 256
           SD SL  L  L+SL+ L
Sbjct: 258 SDISL--LFNLTSLREL 272


>gi|291230586|ref|XP_002735244.1| PREDICTED: partner of paired-like [Saccoglossus kowalevskii]
          Length = 396

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 162/303 (53%), Gaps = 26/303 (8%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 109
           ++G+  L+SLN+  C  +TD  +    +  + +L  L +S C ++TDS +  + + L+ L
Sbjct: 88  VQGMHNLQSLNLSGCYNLTDVGLAHAFVREMPSLTVLNLSLCKQITDSSLGRIAQYLRNL 147

Query: 110 TLLNLEGC--PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSLKVL 160
             L+L GC        L     L  L YLNL  C+ +SD G    + +      G+L + 
Sbjct: 148 EHLDLGGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAHLAGLTKNDAGGTLFLQ 207

Query: 161 NLGFNE---ITDECLVH-LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-SDTQ 214
           +L   +   +TD  L++  +GL  LESLNL  C GI D G+V+L+ + +LK L L S   
Sbjct: 208 HLVLQDCQKLTDLALLNAARGLVKLESLNLSFCGGITDSGMVHLSRMPSLKELNLRSCDN 267

Query: 215 VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL 271
           +   G+ HL+ G   L ++++SF   + D SL  +A G+ SL S++L +  ITD G+A L
Sbjct: 268 ISDIGIAHLAEGGAYLRTLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPITDDGMARL 327

Query: 272 T-SLTGLTHLDLFG-ARITDSGAAYLR-NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 327
             +L  L  L++   +RITD G   +  N + L  +++ G   +T  G++ I  L  L++
Sbjct: 328 VRTLRDLKTLNIGQCSRITDEGLGLIATNLRKLSCIDLYGCTKITTVGLEKIMQLPCLSV 387

Query: 328 LNL 330
           LNL
Sbjct: 388 LNL 390



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 172/368 (46%), Gaps = 54/368 (14%)

Query: 37  VKLDLERC-TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 94
            KL L R    +   LVN +G+ +++ L++K       S    + G+ NL+SL +S C  
Sbjct: 52  AKLHLRRANPSLFPSLVN-RGIRRVQILSLK------RSLSSVVQGMHNLQSLNLSGCYN 104

Query: 95  VTDSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 152
           +TD G+A  +++ +  LT+LNL  C          S+LG +     N   L   GC   +
Sbjct: 105 LTDVGLAHAFVREMPSLTVLNLSLCKQITD-----SSLGRIAQYLRNLEHLDLGGCCNIT 159

Query: 153 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN------- 204
             G L +                 GLT L  LNL SC  + D G+ +L GL         
Sbjct: 160 NTGLLLIA---------------WGLTKLRYLNLRSCRHVSDSGIAHLAGLTKNDAGGTL 204

Query: 205 -LKCLELSDTQ--VGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA 260
            L+ L L D Q     + L    GL  LES+NLSF G I+D  +  L+ + SLK LNL +
Sbjct: 205 FLQHLVLQDCQKLTDLALLNAARGLVKLESLNLSFCGGITDSGMVHLSRMPSLKELNLRS 264

Query: 261 -RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 316
              I+D G+A L      L  LD+ F  ++ D+   ++ +   +L S+ +    +TD G+
Sbjct: 265 CDNISDIGIAHLAEGGAYLRTLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPITDDGM 324

Query: 317 KH-IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN----SRITSAGLRHLKPL 371
              ++ L  L  LN+ Q   +TD+ L LI+  T L  L+  +    ++IT+ GL  +  L
Sbjct: 325 ARLVRTLRDLKTLNIGQCSRITDEGLGLIA--TNLRKLSCIDLYGCTKITTVGLEKIMQL 382

Query: 372 KNLRSLTL 379
             L  L L
Sbjct: 383 PCLSVLNL 390



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 23/223 (10%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLIN--------LVKLDLERCTRIHG-GLVNL-KG 56
           GL+ L  L+ R    ++  G+   AGL          L  L L+ C ++    L+N  +G
Sbjct: 169 GLTKLRYLNLRSCRHVSDSGIAHLAGLTKNDAGGTLFLQHLVLQDCQKLTDLALLNAARG 228

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L+KLESLN+ +C  ITDS M  LS + +LK L + SC  ++D GIA+L +G   L  L++
Sbjct: 229 LVKLESLNLSFCGGITDSGMVHLSRMPSLKELNLRSCDNISDIGIAHLAEGGAYLRTLDV 288

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDE 170
             C  V  A L  ++  + SL  ++L+ C ++DDG  +  + +  LK LN+G  + ITDE
Sbjct: 289 SFCDKVGDASLTHIAQGMYSLMSISLSSCPITDDGMARLVRTLRDLKTLNIGQCSRITDE 348

Query: 171 CLVHLKGL--TNLESLN-LDSCGIGDEGLVNLTGLCNLKCLEL 210
            L    GL  TNL  L+ +D  G      V L  +  L CL +
Sbjct: 349 GL----GLIATNLRKLSCIDLYGCTKITTVGLEKIMQLPCLSV 387



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 132/257 (51%), Gaps = 38/257 (14%)

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 225
           ++G+ NL+SLNL  C  + D GL +        LT L    C +++D+ +G    R    
Sbjct: 88  VQGMHNLQSLNLSGCYNLTDVGLAHAFVREMPSLTVLNLSLCKQITDSSLG----RIAQY 143

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTG------ 276
           L NLE ++L     I++  L  +A GL+ L+ LNL + R ++D+G+A L  LT       
Sbjct: 144 LRNLEHLDLGGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAHLAGLTKNDAGGT 203

Query: 277 --LTHLDLFG-ARITDSGAAYLRNFKNLRSLE-----ICGGGLTDAGVKHIKDLSSLTLL 328
             L HL L    ++TD   A L   + L  LE      CGG +TD+G+ H+  + SL  L
Sbjct: 204 LFLQHLVLQDCQKLTD--LALLNAARGLVKLESLNLSFCGG-ITDSGMVHLSRMPSLKEL 260

Query: 329 NLSQNCNLTDKTL-ELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 385
           NL    N++D  +  L  G   L +L+VS   ++  A L H+ + + +L S++L SC +T
Sbjct: 261 NLRSCDNISDIGIAHLAEGGAYLRTLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPIT 320

Query: 386 ANDIKRLQS--RDLPNL 400
            + + RL    RDL  L
Sbjct: 321 DDGMARLVRTLRDLKTL 337


>gi|343420997|emb|CCD18942.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
          Length = 623

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 136/425 (32%), Positives = 205/425 (48%), Gaps = 62/425 (14%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
             LS LS L +L+      IT   +   + L  L  L+L  CT I   +  L  L +LE+
Sbjct: 56  PPLSKLSRLETLNLMYCTGIT--DVSPLSKLSRLETLNLMYCTGI-TDVSPLSKLSRLET 112

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           LN+ +C  ITD  + PLS ++NL++L +S C+ +TD  +  L  +  L  L L  C  +T
Sbjct: 113 LNLMYCTGITD--VSPLSLISNLRTLDLSHCTGITD--VLPLSLMSNLCSLYLSHCTGIT 168

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 179
                 LS L  L  LNL  C    D     SK+  L+ LNL +   ITD  +  L  ++
Sbjct: 169 DV--PPLSKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSLIS 223

Query: 180 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-T 237
           NL +L+L  C GI D  ++ L+ + NL  + LS    G + +  LS L+ LE++NL + T
Sbjct: 224 NLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCT-GITDVPPLSKLSRLETLNLMYCT 280

Query: 238 GISDGSLRKLAGLSSLKSLNL-DARQITD------------------TGLAALTSLTGLT 278
           GI+D S   L+ LS L++LNL     ITD                  TG+  +  L+ L+
Sbjct: 281 GITDVS--PLSKLSRLETLNLMYCTGITDVSPLSLMSNLCSLYLSHCTGITDVPPLSKLS 338

Query: 279 HLD----LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQN 333
            L+    ++   ITD   + L     L  L++ G  G+TD  V  + DLS+L  L+LS  
Sbjct: 339 RLETLNLMYCTGITD--VSPLSLMSRLEMLDVSGCTGITD--VSPLSDLSNLRTLDLSYC 394

Query: 334 CNLTDKTLELISGLTGLVSLN----VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 389
             +TD     +S L+ ++ L     +  + IT   L  LK +K L  L L  C  +  D+
Sbjct: 395 TGITD-----VSPLSEIIELANLYMIGLTSITDVSL--LKKVKKLEVLYLSGCT-SITDV 446

Query: 390 KRLQS 394
             L +
Sbjct: 447 SPLST 451



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 134/413 (32%), Positives = 201/413 (48%), Gaps = 65/413 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS +SNL +L       IT   +   + + NL  + L  CT I   +  L  L +LE+LN
Sbjct: 12  LSLISNLRTLDLSHCTGIT--DVLPLSLMSNLCSVYLSHCTGI-TDVPPLSKLSRLETLN 68

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAA 122
           + +C  IT  D+ PLS L+ L++L  + C+ +TD  ++ L  L +L  LNL  C  +T  
Sbjct: 69  LMYCTGIT--DVSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGITDV 124

Query: 123 CLDSLSALGSLFYLNL----------------NRCQLSDDGC------EKFSKIGSLKVL 160
               LS + +L  L+L                N C L    C         SK+  L+ L
Sbjct: 125 --SPLSLISNLRTLDLSHCTGITDVLPLSLMSNLCSLYLSHCTGITDVPPLSKLSRLETL 182

Query: 161 NLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           NL +   ITD  +  L  L+ LE+LNL  C GI D   ++L    NL+ L+LS    G +
Sbjct: 183 NLMYCTGITD--VSPLSKLSRLETLNLMYCTGITDVSPLSLIS--NLRTLDLSHCT-GIT 237

Query: 219 GLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
            +  LS ++NL S+ LS  TGI+D  +  L+ LS L++LNL    +  TG+  ++ L+ L
Sbjct: 238 DVLPLSLMSNLCSVYLSHCTGITD--VPPLSKLSRLETLNL----MYCTGITDVSPLSKL 291

Query: 278 THLD----LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ 332
           + L+    ++   ITD   + L    NL SL +    G+TD  V  +  LS L  LNL  
Sbjct: 292 SRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSKLSRLETLNLMY 347

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP---LKNLRSLTLESC 382
              +TD  +  +S ++ L  L+VS       G+  + P   L NLR+L L  C
Sbjct: 348 CTGITD--VSPLSLMSRLEMLDVSG----CTGITDVSPLSDLSNLRTLDLSYC 394



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 152/341 (44%), Gaps = 57/341 (16%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS LS L +L+      IT   +   + + NL  L L  CT I   +  L  L +LE+LN
Sbjct: 288 LSKLSRLETLNLMYCTGIT--DVSPLSLMSNLCSLYLSHCTGI-TDVPPLSKLSRLETLN 344

Query: 65  IKWCNCITD---------------------SDMKPLSGLTNLKSLQIS-CSKVTD----- 97
           + +C  ITD                     +D+ PLS L+NL++L +S C+ +TD     
Sbjct: 345 LMYCTGITDVSPLSLMSRLEMLDVSGCTGITDVSPLSDLSNLRTLDLSYCTGITDVSPLS 404

Query: 98  ----------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
                           + ++ LK ++KL +L L GC  +   +  LS L  L  L+L  C
Sbjct: 405 EIIELANLYMIGLTSITDVSLLKKVKKLEVLYLSGC-TSITDVSPLSTLSGLEKLDLRYC 463

Query: 142 QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 199
               D     S +  L+ L+L +   ITD  +  L  L+ L  L+L  C GI D     L
Sbjct: 464 TGITD-VSPLSTLSGLEKLDLRYCTGITD--VSPLSTLSGLGKLDLSGCTGITDVS--PL 518

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
           + L  L+ L+LS+     S +  L  L  L  + LS   I+D  LR +  L  L++L+L 
Sbjct: 519 STLSRLETLDLSECPGVMSDVDSLCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDLS 578

Query: 260 ARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
               TD T ++ L+++  L  L L G     SG   LR  +
Sbjct: 579 --HCTDVTDVSPLSTVIRLEVLVLRGYTGLRSGLESLRILR 617



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 166/321 (51%), Gaps = 38/321 (11%)

Query: 67  WCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACL 124
           +C  ITD  + PLS ++NL++L +S C+ +TD  +  L  +  L  + L  C  +T    
Sbjct: 2   YCTGITD--VSPLSLISNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCTGITDV-- 55

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLES 183
             LS L  L  LNL  C    D     SK+  L+ LNL +   ITD  +  L  L+ LE+
Sbjct: 56  PPLSKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLET 112

Query: 184 LNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISD 241
           LNL  C GI D   ++L    NL+ L+LS    G + +  LS ++NL S+ LS  TGI+D
Sbjct: 113 LNLMYCTGITDVSPLSLIS--NLRTLDLSHCT-GITDVLPLSLMSNLCSLYLSHCTGITD 169

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYLRN 297
             +  L+ LS L++LNL    +  TG+  ++ L+ L+ L+    ++   ITD   + L  
Sbjct: 170 --VPPLSKLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSL 221

Query: 298 FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
             NLR+L++    G+TD  V  +  +S+L  + LS    +TD  +  +S L+ L +LN+ 
Sbjct: 222 ISNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCTGITD--VPPLSKLSRLETLNL- 276

Query: 357 NSRITSAGLRHLKPLKNLRSL 377
              +   G+  + PL  L  L
Sbjct: 277 ---MYCTGITDVSPLSKLSRL 294


>gi|406830743|ref|ZP_11090337.1| hypothetical protein SpalD1_03864 [Schlesneria paludicola DSM
           18645]
          Length = 304

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 113/240 (47%), Gaps = 35/240 (14%)

Query: 191 IGDEGLVNLTGLCNLKCLEL---SDTQVGSSGLRHLSGLTNLESINLSFTGISD------ 241
           + DEG   L  L  L  +E     DT++  + LR L G  +L+ +++SF  ISD      
Sbjct: 58  VTDEGNRALKELFELPAIEFLGTGDTELQPATLRALQGKRSLKRLSISFAKISDDSAKLL 117

Query: 242 GSLRKLA-------------------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           G+LR L                     L+SLK L L  R   D  +  L  +  L  L +
Sbjct: 118 GTLRSLEVLELRAQVEIHPKVLGEVFNLTSLKELTLSDRLADDPAMEELRRMPYLKTLTV 177

Query: 283 FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDKT 340
               ++D+G A LR  K+LR+L I  G  +T+ GV+H   LS L L +L     N+TDK 
Sbjct: 178 RSVFVSDAGLASLRQVKSLRNLRILLGPKVTEEGVRH---LSELDLADLDITYLNVTDKE 234

Query: 341 LELISGLTGLVSLN-VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
           L+ +    GL  L  VS +++T   +  L  L  L+ L +   K++   I +L+ R LPN
Sbjct: 235 LKSLRKFKGLKGLRLVSAAKVTDEAVPFLSELSELKRLDIADAKLSKAGIGQLE-RALPN 293



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 36/285 (12%)

Query: 18  RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 77
           R  AI  +      G +++V  +L + T    G   LK L +L ++         D++++
Sbjct: 32  REGAIVQRVDSLPDGPVSVVTYNLRQVT--DEGNRALKELFELPAIEFLGTG---DTELQ 86

Query: 78  P-----LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           P     L G  +LK L IS +K++D     L  L+ L +L L      A        LG 
Sbjct: 87  PATLRALQGKRSLKRLSISFAKISDDSAKLLGTLRSLEVLELR-----AQVEIHPKVLGE 141

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           +F L                   SLK L L      D  +  L+ +  L++L + S  + 
Sbjct: 142 VFNLT------------------SLKELTLSDRLADDPAMEELRRMPYLKTLTVRSVFVS 183

Query: 193 DEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
           D GL +L  + +L+ L  L   +V   G+RHLS L +L  +++++  ++D  L+ L    
Sbjct: 184 DAGLASLRQVKSLRNLRILLGPKVTEEGVRHLSEL-DLADLDITYLNVTDKELKSLRKFK 242

Query: 252 SLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
            LK L L  A ++TD  +  L+ L+ L  LD+  A+++ +G   L
Sbjct: 243 GLKGLRLVSAAKVTDEAVPFLSELSELKRLDIADAKLSKAGIGQL 287



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE--- 305
           G  S+ + NL  RQ+TD G  AL  L  L  ++  G   T+   A LR  +  RSL+   
Sbjct: 46  GPVSVVTYNL--RQVTDEGNRALKELFELPAIEFLGTGDTELQPATLRALQGKRSLKRLS 103

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
           I    ++D   K +  L SL +L L     +  K L  +  LT L  L +S+       +
Sbjct: 104 ISFAKISDDSAKLLGTLRSLEVLELRAQVEIHPKVLGEVFNLTSLKELTLSDRLADDPAM 163

Query: 366 RHLKPLKNLRSLTLESCKVT 385
             L+ +  L++LT+ S  V+
Sbjct: 164 EELRRMPYLKTLTVRSVFVS 183


>gi|77556733|gb|ABA99529.1| Leucine Rich Repeat family protein, expressed [Oryza sativa
           Japonica Group]
          Length = 488

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 125/424 (29%), Positives = 188/424 (44%), Gaps = 69/424 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLDLERCTRIHGGLVNLKGLMKLESLNI 65
           G   L  LS +    I+  G+   +   + L  LD+      +  L ++  L KLE L +
Sbjct: 9   GCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLRSISSLEKLEELAM 68

Query: 66  KWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYL----KGLQKLTLLNLEGCPV 119
             C+CI D  ++ L  G  +L+S+ +S C  VT  G+A L      LQKL          
Sbjct: 69  VCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFLQKLN--------- 119

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
            AA  DSL  +   F  NL +  L D          +L VL L   E++   L+ + G  
Sbjct: 120 -AA--DSLHEMRQSFLSNLAK--LKD----------TLTVLRLDGLEVSSSVLLAIGGCN 164

Query: 180 NLESLNLDSC-GIGDEGLVNLTGLC------NLKCLEL---------------------- 210
           NL  + L  C G+ DEG+ +L   C      +L C  L                      
Sbjct: 165 NLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSIAENCKMVEHLRLE 224

Query: 211 SDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGL 268
           S + +   GL  ++    NL+ I+L+  G++D +L+ LA  S L  L L     I+D GL
Sbjct: 225 SCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGL 284

Query: 269 AALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSS 324
           A ++S  G L  LDL+    ITD G A L N  K ++ L +C    +TD+G+ H+  L  
Sbjct: 285 AFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSLEE 344

Query: 325 LTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLES 381
           LT L L     +T   +  ++ G   L+ +++     +  AGL  L     NLR LT+  
Sbjct: 345 LTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISY 404

Query: 382 CKVT 385
           C+VT
Sbjct: 405 CQVT 408



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 169/366 (46%), Gaps = 47/366 (12%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           G  +LE L++KWC  I+D  +  LS   + L+SL IS  KV +  +  +  L+KL  L +
Sbjct: 9   GCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLRSISSLEKLEELAM 68

Query: 115 EGCPVTAACLDS--LSALG----SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
               V  +C+D   L  LG    SL  ++++RC                 V + G   + 
Sbjct: 69  ----VCCSCIDDDGLELLGKGSNSLQSVDVSRCD---------------HVTSQGLASLI 109

Query: 169 DECLVH--LKGLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSG 225
           D    H  L+ L   +SL+     +    L NL  L + L  L L   +V SS L  + G
Sbjct: 110 DG---HNFLQKLNAADSLH----EMRQSFLSNLAKLKDTLTVLRLDGLEVSSSVLLAIGG 162

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLD 281
             NL  I LS   G++D  +  L    S L+ ++L     +T+  L ++      + HL 
Sbjct: 163 CNNLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSIAENCKMVEHLR 222

Query: 282 LFG-ARITDSGAAYLR-NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L   + I++ G   +  +  NL+ +++   G+ DA ++H+   S L +L L    +++DK
Sbjct: 223 LESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDK 282

Query: 340 TLELISGLTG-LVSLNVSN-SRITSAGLRHLK-PLKNLRSLTLESC-KVTANDIKRLQS- 394
            L  IS   G L+ L++   + IT  GL  L    K ++ L L  C K+T + +  L S 
Sbjct: 283 GLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSL 342

Query: 395 RDLPNL 400
            +L NL
Sbjct: 343 EELTNL 348



 Score = 42.0 bits (97), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 117/263 (44%), Gaps = 42/263 (15%)

Query: 14  LSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 72
           L     ++I+ +G++  A    NL ++DL  C      L +L    +L  L +  C+ I+
Sbjct: 221 LRLESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSIS 280

Query: 73  DSDMKPL-SGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLS 128
           D  +  + S    L  L +  C+ +TD G+A L  G +K+ +LNL  C  +T + L  L 
Sbjct: 281 DKGLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLG 340

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
           +L  L  L L RC               +++  +G + +   C        NL  ++L  
Sbjct: 341 SLEELTNLEL-RCL--------------VRITGIGISSVAIGC-------KNLIEIDLKR 378

Query: 189 C-GIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRH----LSGLTNLESINLSFTGISD- 241
           C  + D GL  L     NL+ L +S  QV   GL H    L  L +++ ++LS+  I   
Sbjct: 379 CYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHLLSSLRCLQDVKMVHLSWVSIEGF 438

Query: 242 --------GSLRKLAGLSSLKSL 256
                   G L+KL  LS LKS+
Sbjct: 439 EMALRAACGRLKKLKMLSGLKSV 461



 Score = 41.6 bits (96), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRI-HGGLVNLK-GLMK 59
           ++L+  S L  L     ++I+ +G+   +     L++LDL RC  I   GL  L  G  K
Sbjct: 260 QHLAKCSELLVLKLGLCSSISDKGLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKK 319

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNLEGC 117
           ++ LN+ +CN ITDS +  L  L  L +L++ C  ++T  GI+ +  G + L  ++L+ C
Sbjct: 320 IKMLNLCYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRC 379

Query: 118 -PVTAACLDSLSALG-SLFYLNLNRCQLS 144
             V  A L +L+    +L  L ++ CQ++
Sbjct: 380 YSVDDAGLWALARYALNLRQLTISYCQVT 408


>gi|290996873|ref|XP_002681006.1| predicted protein [Naegleria gruberi]
 gi|284094629|gb|EFC48262.1| predicted protein [Naegleria gruberi]
          Length = 207

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 103/201 (51%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           +++LT LN+ G  +       +S +  L  L+++R ++  +G +  S++  L  LN+ +N
Sbjct: 1   MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           EI  E   ++  + +L SLN+    IG EG   ++ +  L  L ++D ++G  G + +S 
Sbjct: 61  EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           + +L S+ + +  I     + ++ +  L SLN+   QI D G   ++ +  LT L++   
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN 180

Query: 286 RITDSGAAYLRNFKNLRSLEI 306
            I   GA ++   K L SL I
Sbjct: 181 EIGVEGAKFISGMKQLTSLNI 201



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 105/202 (51%), Gaps = 1/202 (0%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           LN+G NEI  E   ++  + +L SL++    IG EG   ++ + +L  L +   ++G  G
Sbjct: 7   LNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYNEIGVEG 66

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
            +++S + +L S+N+    I     + ++ +  L SLN+   +I   G   ++ +  LT 
Sbjct: 67  SKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISEMKHLTS 126

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L ++   I   GA ++   K+L SL I G  + D G K I ++ SLT LN+  N  +  +
Sbjct: 127 LYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN-EIGVE 185

Query: 340 TLELISGLTGLVSLNVSNSRIT 361
             + ISG+  L SLN+ ++ + 
Sbjct: 186 GAKFISGMKQLTSLNIDDNELV 207



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 103/203 (50%), Gaps = 1/203 (0%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L SLN+    IG EG   ++ + +L  L++   ++G  G + +S + +L S+N+ + 
Sbjct: 1   MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I     + ++ +  L SLN+   +I   G   ++ +  LT L++    I   G+ ++  
Sbjct: 61  EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
            K+L SL I    +   G K I ++  LT LN+S N  + D+  + IS +  L SLN+ +
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGN-QIGDEGSKFISEMKSLTSLNIGD 179

Query: 358 SRITSAGLRHLKPLKNLRSLTLE 380
           + I   G + +  +K L SL ++
Sbjct: 180 NEIGVEGAKFISGMKQLTSLNID 202



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 100/201 (49%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           +  L SL I  +++   G  Y+  ++ LT L++    +       +S +  L  LN+   
Sbjct: 1   MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           ++  +G +  S++  L  LN+G NEI  E   ++  +  L SLN+    IG EG   ++ 
Sbjct: 61  EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           + +L  L +   ++G  G + +S + +L S+N+S   I D   + ++ + SL SLN+   
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN 180

Query: 262 QITDTGLAALTSLTGLTHLDL 282
           +I   G   ++ +  LT L++
Sbjct: 181 EIGVEGAKFISGMKQLTSLNI 201



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 26/227 (11%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           +  LTSL+    N I  +G K  + + +L  LD+ R                        
Sbjct: 1   MKQLTSLNIG-GNEIGVEGAKYMSEMKHLTSLDIHR------------------------ 35

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N I     K +S + +L SL I  +++   G  Y+  ++ LT LN+    +       +
Sbjct: 36  -NEIGVEGSKFISEMKHLTSLNIYYNEIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYI 94

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           S +  L  LN+   ++  +G +  S++  L  L + +NEI  E    +  + +L SLN+ 
Sbjct: 95  SEMKQLTSLNIADNEIGVEGSKFISEMKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNIS 154

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
              IGDEG   ++ + +L  L + D ++G  G + +SG+  L S+N+
Sbjct: 155 GNQIGDEGSKFISEMKSLTSLNIGDNEIGVEGAKFISGMKQLTSLNI 201



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 1/208 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SLNI   N I     K +S + +L SL I  +++   G  ++  ++ LT LN+  
Sbjct: 1   MKQLTSLNI-GGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYY 59

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +       +S +  L  LN+   ++  +G +  S++  L  LN+  NEI  E    + 
Sbjct: 60  NEIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFIS 119

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            + +L SL +    IG EG   ++ + +L  L +S  Q+G  G + +S + +L S+N+  
Sbjct: 120 EMKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGD 179

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQIT 264
             I     + ++G+  L SLN+D  ++ 
Sbjct: 180 NEIGVEGAKFISGMKQLTSLNIDDNELV 207


>gi|290971663|ref|XP_002668605.1| predicted protein [Naegleria gruberi]
 gi|284082078|gb|EFC35861.1| predicted protein [Naegleria gruberi]
          Length = 968

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 1/189 (0%)

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           IG EG  +++ +  L  L++ + Q+G  G + +S +  L S+ +S   I D  ++ +  +
Sbjct: 773 IGVEGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKM 832

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
             L S N+   +    G   ++ +  LT LD+    I D GA  +   K L SL I G  
Sbjct: 833 KQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNS 892

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           +   G K I ++  LTLL++ +N  + D+  + IS L  L SL +S ++I   G + +  
Sbjct: 893 IGVEGAKSISEMKQLTLLDIGEN-QIGDEGAKSISELKQLKSLTISENQIGDEGAKFIIG 951

Query: 371 LKNLRSLTL 379
           +K   S  L
Sbjct: 952 MKQYGSFKL 960



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 87/174 (50%)

Query: 146 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
           +G +  S++  L  L++G N+I DE    +  +  L SL +    IGDEG+ ++  +  L
Sbjct: 776 EGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQL 835

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
               +S  + G +G + +S +  L S+++S+  I D   + ++ L  L SL +    I  
Sbjct: 836 TSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGV 895

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
            G  +++ +  LT LD+   +I D GA  +   K L+SL I    + D G K I
Sbjct: 896 EGAKSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISENQIGDEGAKFI 949



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 2/205 (0%)

Query: 30  FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 89
           F+ LI+  K ++E    + G   ++  + +L SL+I   N I D   K +S +  L SL 
Sbjct: 758 FSKLISEEKEEMEHSIGVEGA-KSISEMKQLTSLDIG-ENQIGDEGAKSISEMKQLTSLT 815

Query: 90  ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 149
           IS + + D G+  ++ +++LT  N+       A    +S +  L  L+++  ++ D+G +
Sbjct: 816 ISGNSIGDEGVKSIRKMKQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAK 875

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 209
             S++  L  L +  N I  E    +  +  L  L++    IGDEG  +++ L  LK L 
Sbjct: 876 SISELKQLTSLTISGNSIGVEGAKSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLT 935

Query: 210 LSDTQVGSSGLRHLSGLTNLESINL 234
           +S+ Q+G  G + + G+    S  L
Sbjct: 936 ISENQIGDEGAKFIIGMKQYGSFKL 960



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 1/170 (0%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L SL++    IGDEG  +++ +  L  L +S   +G  G++ +  +  L S N+S+ 
Sbjct: 784 MKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSFNISYN 843

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
                  + ++ +  L SL++   +I D G  +++ L  LT L + G  I   GA  +  
Sbjct: 844 ETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGAKSISE 903

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
            K L  L+I    + D G K I +L  L  L +S+N  + D+  + I G+
Sbjct: 904 MKQLTLLDIGENQIGDEGAKSISELKQLKSLTISEN-QIGDEGAKFIIGM 952



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 1/176 (0%)

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
           E  +  +G  G + +S +  L S+++    I D   + ++ +  L SL +    I D G+
Sbjct: 767 EEMEHSIGVEGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGV 826

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
            ++  +  LT  ++       +GA ++   K L SL+I    + D G K I +L  LT L
Sbjct: 827 KSIRKMKQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSL 886

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
            +S N ++  +  + IS +  L  L++  ++I   G + +  LK L+SLT+   ++
Sbjct: 887 TISGN-SIGVEGAKSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISENQI 941



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 24/191 (12%)

Query: 77  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           K +S +  L SL I  +++ D G   +  +++LT L + G  +    + S+  +  L   
Sbjct: 779 KSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSF 838

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           N++  +    G +  S++  L  L++ +NEI DE    +  L  L SL +    IG EG 
Sbjct: 839 NISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGA 898

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
            +++ +  L  L++ + Q+G  G + +S L                          LKSL
Sbjct: 899 KSISEMKQLTLLDIGENQIGDEGAKSISEL------------------------KQLKSL 934

Query: 257 NLDARQITDTG 267
            +   QI D G
Sbjct: 935 TISENQIGDEG 945


>gi|29823175|emb|CAD15502.2| probable lrr-gala family type III effector protein (gala 4)
           [Ralstonia solanacearum GMI1000]
          Length = 462

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 130/299 (43%), Gaps = 24/299 (8%)

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
            +T +GIA L  L  L  L++ GC + A     L++  +L  LN++R  + DDG    + 
Sbjct: 155 PITSAGIARLLAL-PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDGAAALAA 213

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
              L  LN+G N I+D     L     L  L++    IGD G   L G   L  L+  D 
Sbjct: 214 NPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC 273

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
            +G  G R L+    L  ++L +  I  G    LA    L SLN+    +   G A L +
Sbjct: 274 GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAA 333

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
              LT LD+    I ++GA  L     L  L +   G+ +AG + +   ++LT L++  N
Sbjct: 334 SAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDIGSN 393

Query: 334 -----------CNLTDKTLELISGLTG------------LVSLNVSNSRITSAGLRHLK 369
                       N T  TL+  +   G            L +LNV  +RI  AG+R L+
Sbjct: 394 RIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRALE 452



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 1/233 (0%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           KL SLN+   N I+D+  + L     L  L IS +++ D+G   L G  KL  L+   C 
Sbjct: 216 KLTSLNVG-RNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDCG 274

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +      +L+A  +L  L+L   ++   G E  +    L  LN+  N +       L   
Sbjct: 275 IGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAAS 334

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
             L  L++ + GIG+ G   L     L  L +++  +  +G R L+  T L ++++    
Sbjct: 335 AALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDIGSNR 394

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           I D   + LA   +L +L+  A  I D G  AL   T L  L++   RI ++G
Sbjct: 395 IGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAG 447


>gi|17546519|ref|NP_519921.1| GALA protein [Ralstonia solanacearum GMI1000]
          Length = 401

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 130/299 (43%), Gaps = 24/299 (8%)

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
            +T +GIA L  L  L  L++ GC + A     L++  +L  LN++R  + DDG    + 
Sbjct: 94  PITSAGIARLLAL-PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDGAAALAA 152

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
              L  LN+G N I+D     L     L  L++    IGD G   L G   L  L+  D 
Sbjct: 153 NPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC 212

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
            +G  G R L+    L  ++L +  I  G    LA    L SLN+    +   G A L +
Sbjct: 213 GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAA 272

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
              LT LD+    I ++GA  L     L  L +   G+ +AG + +   ++LT L++  N
Sbjct: 273 SAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDIGSN 332

Query: 334 -----------CNLTDKTLELISGLTG------------LVSLNVSNSRITSAGLRHLK 369
                       N T  TL+  +   G            L +LNV  +RI  AG+R L+
Sbjct: 333 RIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRALE 391



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 1/233 (0%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           KL SLN+   N I+D+  + L     L  L IS +++ D+G   L G  KL  L+   C 
Sbjct: 155 KLTSLNVGR-NGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDCG 213

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +      +L+A  +L  L+L   ++   G E  +    L  LN+  N +       L   
Sbjct: 214 IGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAAS 273

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
             L  L++ + GIG+ G   L     L  L +++  +  +G R L+  T L ++++    
Sbjct: 274 AALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDIGSNR 333

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           I D   + LA   +L +L+  A  I D G  AL   T L  L++   RI ++G
Sbjct: 334 IGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAG 386



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 142/325 (43%), Gaps = 11/325 (3%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-----LKGLMKLESL 63
           ++LT+L   R      +G    AG+  L+ L LER      GL       L     L  L
Sbjct: 81  ASLTALDLSR-----CEGPITSAGIARLLALPLERLDVSGCGLDAESARLLASHPTLTVL 135

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           NI   N I D     L+    L SL +  + ++D+G   L     LT L++    +  A 
Sbjct: 136 NISR-NAIGDDGAAALAANPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAG 194

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
             +L+    L  L+   C +  +G    +   +L  L+L +NEI       L     L S
Sbjct: 195 ARALAGSAKLNKLDAGDCGIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTS 254

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           LN+    +G  G   L     L  L++ +  +G++G R L     L  ++++  GI +  
Sbjct: 255 LNVCGNALGSAGAALLAASAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAG 314

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
            R LA  ++L +L++ + +I D G  AL +   L  LD     I D GA  L +   L +
Sbjct: 315 ARALAASTTLTALDIGSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLAT 374

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLL 328
           L +    + +AG++ ++  ++L +L
Sbjct: 375 LNVGANRIGEAGMRALEASTTLAVL 399


>gi|87311421|ref|ZP_01093541.1| hypothetical protein DSM3645_25297 [Blastopirellula marina DSM
           3645]
 gi|87285833|gb|EAQ77747.1| hypothetical protein DSM3645_25297 [Blastopirellula marina DSM
           3645]
          Length = 192

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            +E+SD  V  + L+ LS  T L+ I L  T ++D +   L  L  L+ +NL    ITD 
Sbjct: 35  SIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDA 94

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
           GLA +  L  LT L +    +TD+G A LR+  +LR L +    LTDA ++HI +++SL 
Sbjct: 95  GLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLE 154

Query: 327 LLNLSQNCNLTDKTL 341
              L Q  N+T+  L
Sbjct: 155 SFYLDQ-TNITEPGL 168



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 1/136 (0%)

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
           +SI +S   +S   L+ L+  + L+ + LD   + D   A L +L  L  ++L  A ITD
Sbjct: 34  DSIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITD 93

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
           +G A +     L  L I    LTDAG+  ++D  SL  L+L Q   LTD  LE I+ +  
Sbjct: 94  AGLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTP-LTDAALEHIAEINS 152

Query: 350 LVSLNVSNSRITSAGL 365
           L S  +  + IT  GL
Sbjct: 153 LESFYLDQTNITEPGL 168



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 1/148 (0%)

Query: 53  NLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 111
            L+ ++  ES +I+  +  ++ ++++ LS  T L+ +++  + + D   A L  L +L  
Sbjct: 24  QLRQVIAGESDSIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQF 83

Query: 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
           +NL    +T A L  ++ L  L  L +    L+D G        SL+ L+L    +TD  
Sbjct: 84  VNLPQADITDAGLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAA 143

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNL 199
           L H+  + +LES  LD   I + GL  L
Sbjct: 144 LEHIAEINSLESFYLDQTNITEPGLAKL 171



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 61/129 (47%)

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           V+ A L  LS    L  + L++  L+D        +  L+ +NL   +ITD  L  +  L
Sbjct: 43  VSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDAGLAEIAKL 102

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
             L  L + S  + D G+  L    +L+ L L  T +  + L H++ + +LES  L  T 
Sbjct: 103 PQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLESFYLDQTN 162

Query: 239 ISDGSLRKL 247
           I++  L KL
Sbjct: 163 ITEPGLAKL 171



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
           S+   L+ + L    + D     L  L  L+ +NL    I D GL  +  L  L  L + 
Sbjct: 52  SRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDAGLAEIAKLPQLTQLRIG 111

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
              +  +G+  L    +L  ++L  T ++D +L  +A ++SL+S  LD   IT+ GLA L
Sbjct: 112 SPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLESFYLDQTNITEPGLAKL 171

Query: 272 TSLTGLTHL 280
                  H+
Sbjct: 172 IERRPQLHV 180



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 63/134 (47%)

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           S+++S   V+ + +  L    +L  + L+  P+       L AL  L ++NL +  ++D 
Sbjct: 35  SIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDA 94

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           G  + +K+  L  L +G   +TD  +  L+   +L  L+L    + D  L ++  + +L+
Sbjct: 95  GLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLE 154

Query: 207 CLELSDTQVGSSGL 220
              L  T +   GL
Sbjct: 155 SFYLDQTNITEPGL 168


>gi|51850106|dbj|BAD42394.1| leucine-rich repeat protein [Ralstonia solanacearum]
          Length = 462

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 130/299 (43%), Gaps = 24/299 (8%)

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
            +T +GIA L  L  L  L++ GC + A     L++  +L  LN++R  + DDG    + 
Sbjct: 155 PITSAGIARLLAL-PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDGAAALAA 213

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
              L  LN+G N I+D     L     L  L++    IGD G   L G   L  L+  D 
Sbjct: 214 NPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC 273

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
            +G  G R L+    L  ++L +  I  G    LA    L SLN+    +   G A L +
Sbjct: 274 GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAA 333

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
              LT LD+    I ++GA  L     L  L +   G+ +AG + +   ++LT L++  N
Sbjct: 334 SAALTELDIGNNGIGNAGARALGANATLVKLNVANNGIEEAGARALAASTTLTALDIGSN 393

Query: 334 -----------CNLTDKTLELISGLTG------------LVSLNVSNSRITSAGLRHLK 369
                       N T  TL+  +   G            L +LNV  +RI  AG+R L+
Sbjct: 394 RIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRALE 452



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 1/233 (0%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           KL SLN+   N I+D+  + L     L  L IS +++ D+G   L G  KL  L+   C 
Sbjct: 216 KLTSLNVG-RNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDCG 274

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +      +L+A  +L  L+L   ++   G E  +    L  LN+  N +       L   
Sbjct: 275 IGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAAS 334

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
             L  L++ + GIG+ G   L     L  L +++  +  +G R L+  T L ++++    
Sbjct: 335 AALTELDIGNNGIGNAGARALGANATLVKLNVANNGIEEAGARALAASTTLTALDIGSNR 394

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           I D   + LA   +L +L+  A  I D G  AL   T L  L++   RI ++G
Sbjct: 395 IGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAG 447


>gi|290997259|ref|XP_002681199.1| predicted protein [Naegleria gruberi]
 gi|284094822|gb|EFC48455.1| predicted protein [Naegleria gruberi]
          Length = 449

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 120/260 (46%), Gaps = 20/260 (7%)

Query: 77  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           K +S  + L  L I CSK  +  I  +  L  LT LN   C +++  L  L  L  L  L
Sbjct: 155 KSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYLNASQCNISSVNLKFLQ-LFKLTKL 213

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           +L++  +  DG +  + + +LK LNL    IT++C+ HL  LT L  LN+    IG+EGL
Sbjct: 214 DLSKNNIGGDGMKVIALLTNLKYLNLQDCNITNDCITHLTSLTKLVHLNVGDNYIGNEGL 273

Query: 197 VNLTGLCNLKCLELSD-----------------TQVGSSGLRHLSGLTNLESINLSFTGI 239
             ++ L NL  L +                    ++   G+ HL+ L NL  ++ S   I
Sbjct: 274 FLISSLRNLTYLSVERGTGRRFNERQVDIANQGMEINHQGIAHLTNLHNLRHLDFSGKPI 333

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
            D  +  +  L+S++ LN+ +R      + +L     L +L++ G  I D GA  L    
Sbjct: 334 CDKGIEFIGKLNSIEILNV-SRCNCSGDIESLQKSPHLINLNIVGNPIGDKGAEILSRM- 391

Query: 300 NLRSLEICGGGLTDAGVKHI 319
            L  L     G++  GVK I
Sbjct: 392 TLEELNARNCGISYDGVKLI 411



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 172/389 (44%), Gaps = 29/389 (7%)

Query: 23  TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 82
           T   +KA   L  L +L L R   +  G  ++  L  + SL +++   +    M  L  L
Sbjct: 29  TVDELKALRHLSALKELTLLRELPLSYG--SIYYLNNITSLKVRFNTVVLIPRMNHLKHL 86

Query: 83  TNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
             L++     S+ TD     I  LK L+   ++      +     + LS L  L  L ++
Sbjct: 87  EILENPN-EKSQFTDIRVGTICKLKNLESF-VVRFPNPRLPPEYFEKLSVLSKLTELEIS 144

Query: 140 RCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
               +D +  +  S    L  LN+  ++  +  +  +  L+NL  LN   C I    L  
Sbjct: 145 TDSSNDWEKAKSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYLNASQCNISSVNLKF 204

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L  L  L  L+LS   +G  G++ ++ LTNL+ +NL    I++  +  L  L+ L  LN+
Sbjct: 205 LQ-LFKLTKLDLSKNNIGGDGMKVIALLTNLKYLNLQDCNITNDCITHLTSLTKLVHLNV 263

Query: 259 DARQITDTGLAALTSLTGLTHLDL-----------------FGARITDSGAAYLRNFKNL 301
               I + GL  ++SL  LT+L +                  G  I   G A+L N  NL
Sbjct: 264 GDNYIGNEGLFLISSLRNLTYLSVERGTGRRFNERQVDIANQGMEINHQGIAHLTNLHNL 323

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           R L+  G  + D G++ I  L+S+ +LN+S+ CN +   +E +     L++LN+  + I 
Sbjct: 324 RHLDFSGKPICDKGIEFIGKLNSIEILNVSR-CNCSGD-IESLQKSPHLINLNIVGNPIG 381

Query: 362 SAGLRHLKPLKNLRSLTLESCKVTANDIK 390
             G   L  +  L  L   +C ++ + +K
Sbjct: 382 DKGAEILSRM-TLEELNARNCGISYDGVK 409



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 97/216 (44%), Gaps = 22/216 (10%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           L  LT L   +NN I   GMK  A L NL  L+L+ C   +  + +L  L KL  LN+  
Sbjct: 207 LFKLTKLDLSKNN-IGGDGMKVIALLTNLKYLNLQDCNITNDCITHLTSLTKLVHLNVG- 264

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCS-----------------KVTDSGIAYLKGLQKLT 110
            N I +  +  +S L NL  L +                    ++   GIA+L  L  L 
Sbjct: 265 DNYIGNEGLFLISSLRNLTYLSVERGTGRRFNERQVDIANQGMEINHQGIAHLTNLHNLR 324

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
            L+  G P+    ++ +  L S+  LN++RC  S D  E   K   L  LN+  N I D+
Sbjct: 325 HLDFSGKPICDKGIEFIGKLNSIEILNVSRCNCSGD-IESLQKSPHLINLNIVGNPIGDK 383

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
               L  +T LE LN  +CGI  +G V L G   +K
Sbjct: 384 GAEILSRMT-LEELNARNCGISYDG-VKLIGNSKIK 417



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 6/178 (3%)

Query: 220 LRHLSGLTNLESINL--SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
           + HL  L  LE+ N    FT I  G++ KL  L S   +     ++       L+ L+ L
Sbjct: 80  MNHLKHLEILENPNEKSQFTDIRVGTICKLKNLESF-VVRFPNPRLPPEYFEKLSVLSKL 138

Query: 278 THLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           T L++      D   A  +  F  L  L I      +  +  +  LS+LT LN SQ CN+
Sbjct: 139 TELEISTDSSNDWEKAKSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYLNASQ-CNI 197

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
           +   L+ +  L  L  L++S + I   G++ +  L NL+ L L+ C +T + I  L S
Sbjct: 198 SSVNLKFLQ-LFKLTKLDLSKNNIGGDGMKVIALLTNLKYLNLQDCNITNDCITHLTS 254


>gi|290973003|ref|XP_002669239.1| predicted protein [Naegleria gruberi]
 gi|284082784|gb|EFC36495.1| predicted protein [Naegleria gruberi]
          Length = 313

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 1/177 (0%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L SL++    IG EG   ++ +  L  L +S  Q+G+ G++ +  +  L+S+N+   
Sbjct: 125 MKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSLNIIGN 184

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I    ++ ++ +  L SLN+   QI D G+  +  +  LT L++   RI   GA  +  
Sbjct: 185 QIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNRIGAEGAKLISE 244

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
            K L SL+IC   +   GVK I+++  L  LN+S N  + D+  + IS +  L SLN
Sbjct: 245 MKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGN-QIGDEEAKFISEMKQLTSLN 300



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 3/187 (1%)

Query: 146 DGCEKFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           D  E+   I  +K L   ++G N+I  E    +  +  L SLN+    IG +G+  +  +
Sbjct: 114 DSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEM 173

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
             LK L +   Q+G+ G++ +S +  L S+N+    I D  ++ +  +  L SLN+   +
Sbjct: 174 KQLKSLNIIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNR 233

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
           I   G   ++ +  LT LD+   RI   G  ++R  K L+SL I G  + D   K I ++
Sbjct: 234 IGAEGAKLISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIGDEEAKFISEM 293

Query: 323 SSLTLLN 329
             LT LN
Sbjct: 294 KQLTSLN 300



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 102/197 (51%), Gaps = 2/197 (1%)

Query: 63  LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           +N+K+   + DS    K ++ +  L SL I  +++   G  ++  +++LT LN+    + 
Sbjct: 104 VNVKFSRKLLDSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIG 163

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
           A  +  +  +  L  LN+   Q+  +G +  S++  L  LN+G N+I DE +  +  +  
Sbjct: 164 AKGVKFIIEMKQLKSLNIIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQ 223

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L SLN+    IG EG   ++ +  L  L++   ++G+ G++ +  +  L+S+N+S   I 
Sbjct: 224 LTSLNICLNRIGAEGAKLISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIG 283

Query: 241 DGSLRKLAGLSSLKSLN 257
           D   + ++ +  L SLN
Sbjct: 284 DEEAKFISEMKQLTSLN 300



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 1/159 (0%)

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           + ++ +  L S+++    I     + ++ +  L SLN+   QI   G+  +  +  L  L
Sbjct: 120 KFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSL 179

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
           ++ G +I   G   +   K L SL I G  + D GVK I ++  LT LN+  N  +  + 
Sbjct: 180 NIIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLN-RIGAEG 238

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
            +LIS +  L SL++  +RI + G++ ++ +K L+SL +
Sbjct: 239 AKLISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNI 277



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 94/187 (50%)

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161
           ++  +++LT L++ G  + A     +S +  L  LN++  Q+   G +   ++  LK LN
Sbjct: 121 FINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSLN 180

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
           +  N+I  E +  +  +  L SLN+    IGDEG+  +  +  L  L +   ++G+ G +
Sbjct: 181 IIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNRIGAEGAK 240

Query: 222 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
            +S +  L S+++ +  I    ++ +  +  LKSLN+   QI D     ++ +  LT L+
Sbjct: 241 LISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIGDEEAKFISEMKQLTSLN 300

Query: 282 LFGARIT 288
            +  ++ 
Sbjct: 301 TYKIKLV 307



 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 283 FGARITDS--GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
           F  ++ DS   A ++   K L SL+I G  +   G K I ++  LT LN+S N  +  K 
Sbjct: 108 FSRKLLDSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYN-QIGAKG 166

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           ++ I  +  L SLN+  ++I + G++ +  +K L SL +
Sbjct: 167 VKFIIEMKQLKSLNIIGNQIGAEGVKLISEMKQLASLNI 205


>gi|326436437|gb|EGD82007.1| hypothetical protein PTSG_11905 [Salpingoeca sp. ATCC 50818]
          Length = 1127

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 145/312 (46%), Gaps = 3/312 (0%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
            + L +L+ L +S ++++   +    GL  + +L+L    +++    + + L SL  L+L
Sbjct: 393 FAHLNSLRDLDLSDNRISSVAVDAFAGLFSVVVLHLNDNRISSVVAHTFADLVSLRELDL 452

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           +  ++S      F+ + SL  L+LG N + +        L++L  L+L +  I +   + 
Sbjct: 453 SNNRISSIAAFAFAGLTSLVELHLGNNTVFEVVADAFADLSSLPKLDLSNNRISNVSALA 512

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
              L +L  L LS+ ++ S      SGLT+L ++++ F  IS      L     L+SLNL
Sbjct: 513 FADLTSLTELRLSNNRISSIVENAFSGLTSLMTLDVHFNRISTLDENALISTFKLESLNL 572

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
           D   +         +LT L+HL L   R T    +   +   LR L +     T+  V  
Sbjct: 573 DHNPVDTFPPRLFVNLTRLSHLRLTSTRATTLPTSLFEHNTRLRELWLFHNRFTEIEVGT 632

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
              L+ L  L L+ N ++T     L + LT L  L +SN+ + +      + L++L +LT
Sbjct: 633 FDKLTRLVFLTLTGN-DITHLPSMLFARLTRLKELYISNNDVRTVDPNAFRGLESLTTLT 691

Query: 379 LESCKVTANDIK 390
           L   ++  ND+ 
Sbjct: 692 LVRNRI--NDLH 701



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 5/209 (2%)

Query: 7   GLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESL 63
             ++LTSL+  R  NN I++    AF+GL +L+ LD+    RI     N L    KLESL
Sbjct: 512 AFADLTSLTELRLSNNRISSIVENAFSGLTSLMTLDVH-FNRISTLDENALISTFKLESL 570

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           N+   N +     +    LT L  L+++ ++ T    +  +   +L  L L     T   
Sbjct: 571 NLD-HNPVDTFPPRLFVNLTRLSHLRLTSTRATTLPTSLFEHNTRLRELWLFHNRFTEIE 629

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           + +   L  L +L L    ++      F+++  LK L +  N++        +GL +L +
Sbjct: 630 VGTFDKLTRLVFLTLTGNDITHLPSMLFARLTRLKELYISNNDVRTVDPNAFRGLESLTT 689

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSD 212
           L L    I D      T    L+ ++LSD
Sbjct: 690 LTLVRNRINDLHADTFTTATALENVDLSD 718


>gi|290983780|ref|XP_002674606.1| predicted protein [Naegleria gruberi]
 gi|284088197|gb|EFC41862.1| predicted protein [Naegleria gruberi]
          Length = 232

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 1/226 (0%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           + +LT L++    +  A  + +  L +L  LN+    LS +G E   K+  L VLN+ FN
Sbjct: 1   MNRLTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN 60

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
            I D    ++  L+ L +L++ S  I +EG  +++ L  L  L+L+D ++   G ++L  
Sbjct: 61  GIGDLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGE 120

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           L+ L+ +NL    I D   + ++ L +L  LNL    I + G+ ++  L  LT L++   
Sbjct: 121 LSQLKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN 180

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
           RI++  A  +   K L+ L      + + G K + ++  L +L+LS
Sbjct: 181 RISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEM-ELDILDLS 225



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 109/213 (51%), Gaps = 1/213 (0%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L++GFN + D     +  LT L  LN+    +  EG  ++  L  L  L ++   +G  G
Sbjct: 7   LSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFNGIGDLG 66

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
             ++  L+ L +++++   I++   R ++ L  L  L+L+  +I   G   L  L+ L  
Sbjct: 67  AAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQLKK 126

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L+L    I D GA  +   +NL  L +    + + G+K I +L  LT LN+SQN  ++++
Sbjct: 127 LNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN-RISNE 185

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 372
             +LISG+  L  L  ++++I + G + L  ++
Sbjct: 186 EAQLISGMKQLKELVATHTQIDNEGAKKLHEME 218



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 1/205 (0%)

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D G   +  L  L  L +++  +   G   +  LT L  +N++F GI D     +  LS 
Sbjct: 16  DAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFNGIGDLGAAYIGELSK 75

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L +L++ +  IT+ G  +++ L  LT LDL   RI   GA YL     L+ L +    + 
Sbjct: 76  LTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQLKKLNLLANYIQ 135

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 372
           D G K +  L +LT LNL++N ++ ++ ++ I  L  L  LN+S +RI++   + +  +K
Sbjct: 136 DKGAKSVSQLENLTELNLTRN-SIQNEGIKSIIELPLLTKLNISQNRISNEEAQLISGMK 194

Query: 373 NLRSLTLESCKVTANDIKRLQSRDL 397
            L+ L     ++     K+L   +L
Sbjct: 195 QLKELVATHTQIDNEGAKKLHEMEL 219



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 2/203 (0%)

Query: 46  RIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 104
           R+H     + G L  L  LN+   N ++    + +  LT L  L I+ + + D G AY+ 
Sbjct: 13  RLHDAGAEIIGQLTTLTELNVAE-NFLSHEGAESICKLTQLTVLNINFNGIGDLGAAYIG 71

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
            L KLT L++    +T     S+S L  L  L+LN  +++  G +   ++  LK LNL  
Sbjct: 72  ELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQLKKLNLLA 131

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           N I D+    +  L NL  LNL    I +EG+ ++  L  L  L +S  ++ +   + +S
Sbjct: 132 NYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQNRISNEEAQLIS 191

Query: 225 GLTNLESINLSFTGISDGSLRKL 247
           G+  L+ +  + T I +   +KL
Sbjct: 192 GMKQLKELVATHTQIDNEGAKKL 214



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           +  L  L I  +++ D+G   +  L  LT LN+    ++    +S+  L  L  LN+N  
Sbjct: 1   MNRLTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN 60

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            + D G     ++  L  L++  N IT+E    +  L  L  L+L+   I  +G   L  
Sbjct: 61  GIGDLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGE 120

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L  LK L L    +   G + +S L NL  +NL+   I +  ++ +  L  L  LN+   
Sbjct: 121 LSQLKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN 180

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           +I++     ++ +  L  L     +I + GA  L   +
Sbjct: 181 RISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEME 218



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           LS LT+LS   +N IT +G ++ + L  L  LDL        G   L  L +L+ LN+  
Sbjct: 73  LSKLTNLSIA-SNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQLKKLNL-L 130

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N I D   K +S L NL  L ++ + + + GI  +  L  LT LN+    ++      +
Sbjct: 131 ANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQNRISNEEAQLI 190

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
           S +  L  L     Q+ ++G +K  ++  L +L+L +
Sbjct: 191 SGMKQLKELVATHTQIDNEGAKKLHEM-ELDILDLSY 226


>gi|297171917|gb|ADI22904.1| hypothetical protein [uncultured Rhizobium sp. HF0500_35F13]
          Length = 412

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 2/165 (1%)

Query: 101 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160
           A + G + +T+       +T   L+ L  LG++ YL+L+   + DDG    +K+  L+VL
Sbjct: 41  AQVSGTRSVTV-RFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVL 99

Query: 161 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
            L   EITD     L  L++L  L      +GD     L     L  L+++  QV  SGL
Sbjct: 100 VLSGTEITDTGFSQLSNLSDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGL 158

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
            HLSG+ NL+ + LS T I+D  L  L  ++ L+ L L+  +ITD
Sbjct: 159 SHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTKITD 203



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 62  SLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           S+ +++ N  +T  D++PL  L  +  L +S + V D G+ ++  L+ L +L L G  +T
Sbjct: 48  SVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEIT 107

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
                 LS L  L  L  +   + D      +    L  L++   ++TD  L HL G+ N
Sbjct: 108 DTGFSQLSNLSDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGLSHLSGMKN 166

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
           L+ L L    I D+GL +L  +  L+ L+L++T++
Sbjct: 167 LKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTKI 201



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 1/147 (0%)

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           +T + L  L  L  +  L+L    +GD+G+V++  L  L+ L LS T++  +G   LS L
Sbjct: 58  LTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDTGFSQLSNL 117

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
           ++L  +  S   + DG+   LA  + L  L++   Q+TD+GL+ L+ +  L  L L    
Sbjct: 118 SDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTA 176

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTD 313
           ITD G  +L++   LR L++    +TD
Sbjct: 177 ITDKGLEHLQSITVLRDLQLNNTKITD 203



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 33/201 (16%)

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L  +  L+LSDT VG  G+ H++ L  L+ + LS T                        
Sbjct: 69  LGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGT------------------------ 104

Query: 262 QITDTGLAALTSLTGLTHL---DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
           +ITDTG + L++L+ L  L   +L G    D   A L +   L  L++ GG +TD+G+ H
Sbjct: 105 EITDTGFSQLSNLSDLNQLTASELMG----DGTTAALASATKLNFLDMTGGQVTDSGLSH 160

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           +  + +L  L LS+   +TDK LE +  +T L  L ++N++IT  GL  L+ L NL  L 
Sbjct: 161 LSGMKNLKRLTLSRTA-ITDKGLEHLQSITVLRDLQLNNTKITDEGLLLLEGLSNLNVLA 219

Query: 379 LESCKVTANDIKRLQSRDLPN 399
           +     T N + +LQ+  LP+
Sbjct: 220 ITGTGTTLNGVTKLQAA-LPD 239



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 78/162 (48%), Gaps = 14/162 (8%)

Query: 231 SINLSFT--GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           S+ + FT   ++   L  L  L ++  L+L    + D G+  +  L GL  L L G  IT
Sbjct: 48  SVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEIT 107

Query: 289 DSGAAYLRNFKNLRSL---EICGGGLTDAGVKHIKDLSSLTLLNL--SQNCNLTDKTLEL 343
           D+G + L N  +L  L   E+ G G T A       L+S T LN        +TD  L  
Sbjct: 108 DTGFSQLSNLSDLNQLTASELMGDGTTAA-------LASATKLNFLDMTGGQVTDSGLSH 160

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           +SG+  L  L +S + IT  GL HL+ +  LR L L + K+T
Sbjct: 161 LSGMKNLKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTKIT 202


>gi|290981770|ref|XP_002673604.1| hypothetical protein NAEGRDRAFT_58930 [Naegleria gruberi]
 gi|284087189|gb|EFC40860.1| hypothetical protein NAEGRDRAFT_58930 [Naegleria gruberi]
          Length = 494

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 114/231 (49%), Gaps = 3/231 (1%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           L +LT LN+    V       +  +  L YL+++   +SD+G +  S++  L  LN+   
Sbjct: 224 LHQLTCLNISSNNVGFNTFKPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNVNCT 283

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
            I  E   ++  LT L +L         EG    + +  L  L++S   +G++G+++LS 
Sbjct: 284 IIGIEGAKYISKLTKLRTLIAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSK 343

Query: 226 LTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           +  L  +N++   I+     +   +  LS L  L++ +  I   G+ A+++++ L  L++
Sbjct: 344 MKQLTELNINDNAINQFGTEESKLIRELSQLTKLSISSNNIGIEGVTAISTMSQLRTLNI 403

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           F  RI  +GA  +   +NL  L+IC   +   G K I  +  LT L++++N
Sbjct: 404 FFNRIGLAGAKLISGMQNLTVLDICNNDIGTNGAKEISKMKQLTKLDIARN 454



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 129/271 (47%), Gaps = 10/271 (3%)

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK---VLNLGFNEITDECLVHLKGLTN 180
           L+S+S L  L  LN++    ++ G   F  IG++K    L++ +N I+DE    L  L+ 
Sbjct: 218 LESISQLHQLTCLNISS---NNVGFNTFKPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQ 274

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  LN++   IG EG   ++ L  L+ L  +       G ++ S +  L ++++S   I 
Sbjct: 275 LTHLNVNCTIIGIEGAKYISKLTKLRTLIAARNNFWIEGCQYFSEMEQLTALDVSHNSIG 334

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAA---LTSLTGLTHLDLFGARITDSGAAYLRN 297
           +  ++ L+ +  L  LN++   I   G      +  L+ LT L +    I   G   +  
Sbjct: 335 NTGIKYLSKMKQLTELNINDNAINQFGTEESKLIRELSQLTKLSISSNNIGIEGVTAIST 394

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
              LR+L I    +  AG K I  + +LT+L++  N   T+   E IS +  L  L+++ 
Sbjct: 395 MSQLRTLNIFFNRIGLAGAKLISGMQNLTVLDICNNDIGTNGAKE-ISKMKQLTKLDIAR 453

Query: 358 SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           + I + G + LK +K L+SL      +  ND
Sbjct: 454 NMIGNEGAKALKSMKQLKSLRNTFNNIIWND 484



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 111/236 (47%), Gaps = 7/236 (2%)

Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-----EGLVNLTGLCNL 205
           F K   L  L++G + I  E    +  L +L SL++++    +     E L +++ L  L
Sbjct: 168 FEKTKQLTKLDIGKSIIWLEGFKSITELKHLNSLDMNNMVFMEKESKLELLESISQLHQL 227

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
            CL +S   VG +  + +  +  L  +++S+  ISD   + L+ LS L  LN++   I  
Sbjct: 228 TCLNISSNNVGFNTFKPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNVNCTIIGI 287

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
            G   ++ LT L  L          G  Y    + L +L++    + + G+K++  +  L
Sbjct: 288 EGAKYISKLTKLRTLIAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSKMKQL 347

Query: 326 TLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           T LN++ N       +  +LI  L+ L  L++S++ I   G+  +  +  LR+L +
Sbjct: 348 TELNINDNAINQFGTEESKLIRELSQLTKLSISSNNIGIEGVTAISTMSQLRTLNI 403


>gi|149178815|ref|ZP_01857396.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
 gi|148842356|gb|EDL56738.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
          Length = 1189

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG 284
           LT++E IN+    ++D  L  L G  +L+ +NL  + + TD GLA L+   GL  LDL+G
Sbjct: 547 LTHVELINMK--KVTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLWG 604

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-----LLNLSQNCNLTDK 339
             IT  G  Y  +F +LR L +    L+   +  +K  +SL      +L+L+Q     D 
Sbjct: 605 TNITKQGLEYFTDFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQA---DDS 661

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
           TL ++SG + L  LN+  + I   GL  L+  +NLR+L L    VT   I+RL ++ LP 
Sbjct: 662 TLAILSGASQLGQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRL-AQALPE 720



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 113/260 (43%), Gaps = 20/260 (7%)

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           +N  +++D G        +L+ +NL ++ E TD  L HL     L+ L+L    I  +GL
Sbjct: 553 INMKKVTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLWGTNITKQGL 612

Query: 197 VNLTGLCNLKCLELSDTQVGS---SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
              T   +L+ L L DTQ+ +   S L+  + L  LE + LS T   D +L  L+G S L
Sbjct: 613 EYFTDFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQADDSTLAILSGASQL 672

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR--------NFKNLRSLE 305
             LNL+   I D GL +L     L +L L    +T  G   L         ++  L+   
Sbjct: 673 GQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRLAQALPECDIDWSELKKTS 732

Query: 306 ICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-- 362
              G  T DAG +   D     +    Q   ++ K +E+  G  G +   + N  +    
Sbjct: 733 TSNGRWTPDAGQQKFFD-EVARMKATDQVVAVSQKLMEVNPGFDGKLKETIENGHVVGLT 791

Query: 363 --AG--LRHLKPLKNLRSLT 378
             AG  +  + P++ L  LT
Sbjct: 792 FLAGDHIAEIWPVRALSDLT 811



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 179/396 (45%), Gaps = 70/396 (17%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYL---KGLQKLTLL 112
           L  +E +N+K    +TD+ +  L G  NL+ + ++ S + TD+G+A+L   +GLQ+L   
Sbjct: 547 LTHVELINMK---KVTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRL--- 600

Query: 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC---EKFSKIGSLKVLNLGFNEITD 169
           +L G  +T   L+  +    L  L L   QLS +     ++++ +  L++L L   +  D
Sbjct: 601 DLWGTNITKQGLEYFTDFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQADD 660

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT-- 227
             L  L G + L  LNL+   I D GL +L    NL+ L L+ T V + G+R L+     
Sbjct: 661 STLAILSGASQLGQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRLAQALPE 720

Query: 228 -NLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSL----------- 274
            +++   L  T  S+G     AG    K  +  AR + TD  +A    L           
Sbjct: 721 CDIDWSELKKTSTSNGRWTPDAG--QQKFFDEVARMKATDQVVAVSQKLMEVNPGFDGKL 778

Query: 275 ---------TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
                     GLT   L G  I +     +R   +L SL +CGG     G   + DLS L
Sbjct: 779 KETIENGHVVGLTF--LAGDHIAEIWP--VRALSDLTSL-VCGGNHLTHG--KLTDLSPL 831

Query: 326 TLLNLSQNCNLTDKTLELISGLTG--LVSLNVSNSRI-----------------TSAGLR 366
             L L++  ++++ ++  ++ L G  L  L  +++RI                 +S  + 
Sbjct: 832 VGLPLTK-MDISNSSVSDLTPLKGMKLAHLYGAHTRIKDLSPLADMPLKVLFLWSSPHVS 890

Query: 367 HLKPLKNLR--SLTLESCKVTANDIKRLQSRDLPNL 400
            L PLK +R  +L L+  +V   D+  LQ  DL +L
Sbjct: 891 DLSPLKGMRLTNLNLDFTQVA--DLSPLQGMDLTHL 924


>gi|149242641|pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
 gi|149242643|pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
          Length = 461

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 163/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ LN
Sbjct: 103 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN 157

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 158 --FGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 206

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 207 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 262

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 263 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 318

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 319 ISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 376

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 377 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 424



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 185/387 (47%), Gaps = 64/387 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 19  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 78

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L
Sbjct: 79  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 136

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                T + + +LS L SL  LN    Q++D   +  + + +L+ L++  N+++D  +  
Sbjct: 137 SSN--TISDISALSGLTSLQQLNFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV-- 189

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L
Sbjct: 190 LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL 245

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + 
Sbjct: 246 ANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISP 299

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           + N KNL  L +    ++D     I  +SSLT L   Q    ++  +  +S L  L ++N
Sbjct: 300 ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFSNNKVSDVSSLANLTNIN 351

Query: 355 VSNSRITSAG---LRHLKPLKNLRSLT 378
                  SAG   +  L PL NL  +T
Sbjct: 352 -----WLSAGHNQISDLTPLANLTRIT 373


>gi|300868028|ref|ZP_07112666.1| Small GTP-binding protein (fragment) [Oscillatoria sp. PCC 6506]
 gi|300333948|emb|CBN57844.1| Small GTP-binding protein (fragment) [Oscillatoria sp. PCC 6506]
          Length = 376

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 169/343 (49%), Gaps = 50/343 (14%)

Query: 28  KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 87
           +A A L  L +LDL+ C ++      +  L +L+ LN+   N +T+   + ++ L+ L++
Sbjct: 37  EAIATLTQLQRLDLD-CNQLTKVPEAIASLSQLQILNLS-NNKLTEVP-EAIASLSQLQT 93

Query: 88  LQISCSKVTD--SGIAYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQL 143
           L +  +K+T+    IA L  LQKL L N  L   P      +++++L  L  LNLN  QL
Sbjct: 94  LNLIYNKLTEVPEAIATLTQLQKLYLSNNQLTQVP------EAIASLSQLQTLNLNFNQL 147

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTG 201
           ++   E  + +  L+ LNL +N++T E    +  LT LE L L++  +    E + +LT 
Sbjct: 148 TE-VPEAIASLSQLRRLNLSYNQLT-EVPETIASLTQLEWLYLNNNQLRKVPEAIASLT- 204

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
              L+ L LSD +                      T + +     +A LS L+SLNL   
Sbjct: 205 --QLQRLSLSDNE---------------------LTAVPEA----IASLSQLRSLNLSNN 237

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           Q+T+    A+ SLT L  L L G ++T+   A + +   L+ L + G  LT A  + I  
Sbjct: 238 QLTELP-EAIASLTQLQELYLVGNQLTELPEA-IASLTQLQELYLVGNELT-AVPEAIAS 294

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           L+ L  L+LS N  LT    E I+ LT L  L++S +++T   
Sbjct: 295 LTQLQRLSLSDN-ELT-AVPEAIASLTHLQGLDLSYNQLTQVP 335


>gi|149242645|pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
          Length = 461

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 163/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ LN
Sbjct: 103 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN 157

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 158 --FGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 206

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 207 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 262

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 263 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 318

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 319 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 376

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 377 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 424



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 184/387 (47%), Gaps = 64/387 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 19  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 78

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L
Sbjct: 79  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 136

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                T + + +LS L SL  LN    Q++D   +  + + +L+ L++  N+++D  +  
Sbjct: 137 SSN--TISDISALSGLTSLQQLNFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV-- 189

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L
Sbjct: 190 LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL 245

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + 
Sbjct: 246 ANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISP 299

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N
Sbjct: 300 ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN 351

Query: 355 VSNSRITSAG---LRHLKPLKNLRSLT 378
                  SAG   +  L PL NL  +T
Sbjct: 352 -----WLSAGHNQISDLTPLANLTRIT 373


>gi|224124658|ref|XP_002330078.1| predicted protein [Populus trichocarpa]
 gi|222871503|gb|EEF08634.1| predicted protein [Populus trichocarpa]
          Length = 1228

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 137/296 (46%), Gaps = 21/296 (7%)

Query: 6   SGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERCTRIHGGLVNLKG-LMKLESL 63
           S L  L  L   RN     +G +  F GL  L  LDL        GL  L   L KLE+L
Sbjct: 121 SKLRKLEVLDLTRNRFNNDKGILSCFNGLSALKSLDLSDNQLTGSGLKVLSSRLKKLENL 180

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAA 122
           ++    C  DS    ++G ++LKSL +S ++VT SG+  L   L++L  L+L       +
Sbjct: 181 HLSANQC-NDSIFSSITGFSSLKSLDLSYNEVTGSGLKVLSSRLKRLENLDLSDNQCNDS 239

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL--------GFNEITDECLVH 174
              SL+   SL  LNL+  QL+        K G    L            +       V 
Sbjct: 240 IFSSLTGFSSLKSLNLSYNQLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVL 299

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV-GSSGLRHLSGLTNLESIN 233
           + GL NLE L+L S  + +  L +L+G   LK L+LS  +  GS+GL+   GL NLE + 
Sbjct: 300 VSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSYNKFTGSTGLK---GLRNLEELY 356

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
           L F   ++  L  L+G S+LKSL+L   + T +       L GL +L+      TD
Sbjct: 357 LGFNKFNNSILSSLSGFSTLKSLDLSNNKFTGS-----IGLKGLRNLETLNLEYTD 407



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 145/301 (48%), Gaps = 25/301 (8%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNL 85
             +  G  +L  LDL        GL  L   L +LE+L++    C  DS    L+G ++L
Sbjct: 192 FSSITGFSSLKSLDLSYNEVTGSGLKVLSSRLKRLENLDLSDNQC-NDSIFSSLTGFSSL 250

Query: 86  KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL--------SALGSLFYLN 137
           KSL +S +++T S +  ++     + L      +     D+         S L +L  L+
Sbjct: 251 KSLNLSYNQLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELH 310

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           L   +L+++     S   +LK L+L +N+ T      LKGL NLE L L      +  L 
Sbjct: 311 LYSNKLNNNILSSLSGFSTLKSLDLSYNKFTGS--TGLKGLRNLEELYLGFNKFNNSILS 368

Query: 198 NLTGLCNLKCLELSDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKS 255
           +L+G   LK L+LS+ +  GS GL+   GL NLE++NL +T   +  L   L  L SLK+
Sbjct: 369 SLSGFSTLKSLDLSNNKFTGSIGLK---GLRNLETLNLEYTDFKESILIESLGALPSLKT 425

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L     +    G   L++ + L  + L+ + +    A++LRN  +L +L++    L+ AG
Sbjct: 426 LYASYSKFKHFG-KGLSNSSSLEEVFLYYSYLP---ASFLRNIGHLSTLKV----LSLAG 477

Query: 316 V 316
           V
Sbjct: 478 V 478



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 10/204 (4%)

Query: 193 DEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGL 250
           D+G+++   GL  LK L+LSD Q+  SGL+ LS  L  LE+++LS    +D     + G 
Sbjct: 139 DKGILSCFNGLSALKSLDLSDNQLTGSGLKVLSSRLKKLENLHLSANQCNDSIFSSITGF 198

Query: 251 SSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           SSLKSL+L   ++T +GL  L+S L  L +LDL   +  DS  + L  F +L+SL +   
Sbjct: 199 SSLKSLDLSYNEVTGSGLKVLSSRLKRLENLDLSDNQCNDSIFSSLTGFSSLKSLNLSYN 258

Query: 310 GLTDAGVKHIKDLSSLTLLN-------LSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            LT + +  I+     + L        L  + N       L+SGL  L  L++ ++++ +
Sbjct: 259 QLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELHLYSNKLNN 318

Query: 363 AGLRHLKPLKNLRSLTLESCKVTA 386
             L  L     L+SL L   K T 
Sbjct: 319 NILSSLSGFSTLKSLDLSYNKFTG 342


>gi|290993931|ref|XP_002679586.1| hypothetical protein NAEGRDRAFT_47566 [Naegleria gruberi]
 gi|284093203|gb|EFC46842.1| hypothetical protein NAEGRDRAFT_47566 [Naegleria gruberi]
          Length = 675

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 152/308 (49%), Gaps = 42/308 (13%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLN 113
           GL  L +LN++ C+ ITD+ +K L+ ++ NL  L +  C+KV DS ++Y+    +L  L+
Sbjct: 337 GLQTLHTLNVQGCHYITDNGVKYLTYISQNLTHLNLRGCTKVNDSAMSYISQFSQLNYLD 396

Query: 114 LEGCP-VTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           + GC  VT   +  LS       L YL+L  C Q++D+G    S++  L+ L L      
Sbjct: 397 MTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGVRYLSEMTELEDLTL------ 450

Query: 169 DECLVHL--KGLT-------NLESLNLDSC------GIGDEGLVNLTGLCNLKCLELSDT 213
            +C  H+  KGLT       N+  LNL  C      G+    L  L  L  + C   SD 
Sbjct: 451 -QCCRHITAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLEKLSMMGCKLTSD- 508

Query: 214 QVGSSGLRHLSGLT-NLESINLSFTG-ISDGSL-RKLAGLSSLKSLNLDA-RQITDTGLA 269
               + LR +S  T NL+ + LSF+  I+DG + R +    +L  LNL     ITD  L 
Sbjct: 509 ----NCLRVISDWTCNLKELVLSFSDMITDGGIERVIINSKNLSHLNLKKCSNITDKSLE 564

Query: 270 ALTSLTG--LTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSL 325
            ++      + +L+L G R  T+ G  YL N  +L+   I     + + G+ H+    SL
Sbjct: 565 CISKHLSNVVEYLNLTGVRGFTNGGLKYLENCTSLKEFVIQRCIHVNNEGLAHLAYCPSL 624

Query: 326 TLLNLSQN 333
            +L++S+N
Sbjct: 625 EILDISEN 632



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 131/289 (45%), Gaps = 41/289 (14%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKG---LMKLESLNI 65
           NLT L+ R    +    M   +    L  LD+  C  +   G+ +L       KL+ L++
Sbjct: 366 NLTHLNLRGCTKVNDSAMSYISQFSQLNYLDMTGCVNVTDLGVKHLSQSACKTKLKYLDL 425

Query: 66  KWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYL-KGLQKLTLLNLEGCPVTAAC 123
            +C+ +TD  ++ LS +T L+ L + C + +T  G+  L    Q + +LNL GC +    
Sbjct: 426 TFCHQVTDEGVRYLSEMTELEDLTLQCCRHITAKGLTQLVNSCQNIRVLNLTGCHLLEIS 485

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNE-ITD----ECLVHLK 176
                +L  L  L++  C+L+ D C +       +LK L L F++ ITD      +++ K
Sbjct: 486 GVRSGSLPKLEKLSMMGCKLTSDNCLRVISDWTCNLKELVLSFSDMITDGGIERVIINSK 545

Query: 177 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
              NL  LNL  C  I D+          L+C+            +HLS +  +E +NL+
Sbjct: 546 ---NLSHLNLKKCSNITDKS---------LECIS-----------KHLSNV--VEYLNLT 580

Query: 236 -FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 282
              G ++G L+ L   +SLK   +     + + GLA L     L  LD+
Sbjct: 581 GVRGFTNGGLKYLENCTSLKEFVIQRCIHVNNEGLAHLAYCPSLEILDI 629



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 34/196 (17%)

Query: 233 NLSFTGISDGSLRKL-AGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDLFG-ARIT 288
           N  FT   + + R+   GL +L +LN+     ITD G+  LT ++  LTHL+L G  ++ 
Sbjct: 320 NFGFTSKRNPNSREPNYGLQTLHTLNVQGCHYITDNGVKYLTYISQNLTHLNLRGCTKVN 379

Query: 289 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD---LSSLTLLNLSQNCNLTDKTLELI 344
           DS  +Y+  F  L  L++ G   +TD GVKH+      + L  L+L+    +TD+ +  +
Sbjct: 380 DSAMSYISQFSQLNYLDMTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGVRYL 439

Query: 345 SGLTGLVSLNVSNSR-ITSAGLR-----------------HLKPLKNLRS--------LT 378
           S +T L  L +   R IT+ GL                  HL  +  +RS        L+
Sbjct: 440 SEMTELEDLTLQCCRHITAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLEKLS 499

Query: 379 LESCKVTANDIKRLQS 394
           +  CK+T+++  R+ S
Sbjct: 500 MMGCKLTSDNCLRVIS 515



 Score = 45.8 bits (107), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 117/244 (47%), Gaps = 21/244 (8%)

Query: 177 GLTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSD-TQVGSSGLRHLSGLTNLESIN 233
           GL  L +LN+  C  I D G+  LT +  NL  L L   T+V  S + ++S  + L  ++
Sbjct: 337 GLQTLHTLNVQGCHYITDNGVKYLTYISQNLTHLNLRGCTKVNDSAMSYISQFSQLNYLD 396

Query: 234 LS----FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-I 287
           ++     T +    L + A  + LK L+L    Q+TD G+  L+ +T L  L L   R I
Sbjct: 397 MTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGVRYLSEMTELEDLTLQCCRHI 456

Query: 288 TDSGAAYLRNF-KNLRSLEICGGGLTD-AGVKH--IKDLSSLTLLNLSQNCNLT-DKTLE 342
           T  G   L N  +N+R L + G  L + +GV+   +  L  L+++     C LT D  L 
Sbjct: 457 TAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLEKLSMMG----CKLTSDNCLR 512

Query: 343 LISGLT-GLVSLNVSNSR-ITSAGL-RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
           +IS  T  L  L +S S  IT  G+ R +   KNL  L L+ C    +      S+ L N
Sbjct: 513 VISDWTCNLKELVLSFSDMITDGGIERVIINSKNLSHLNLKKCSNITDKSLECISKHLSN 572

Query: 400 LVSF 403
           +V +
Sbjct: 573 VVEY 576


>gi|390362171|ref|XP_003730087.1| PREDICTED: F-box/LRR-repeat protein 14-like [Strongylocentrotus
           purpuratus]
          Length = 478

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 161/330 (48%), Gaps = 56/330 (16%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           + G+ N++SL +S C  +TD G+  A+ K +  LT+LNL  C                  
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCK----------------- 212

Query: 136 LNLNRCQLSDDGCEKFSK-IGSLKVLNL-GFNEITDE-CLVHLKGLTNLESLNLDSC-GI 191
                 Q++D    +  + +  L+VL+L G + IT+   LV  +GL  L+ LNL SC  I
Sbjct: 213 ------QITDTSLWRIEQYLKQLEVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHI 266

Query: 192 GDEGLVNLTG--------------LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
            D G+  L G              L    C +LSDT + S       GL  L S+NLSF 
Sbjct: 267 SDVGIGYLAGVSVEAARGTRDLELLVLQDCQKLSDTALMSIA----KGLHKLRSLNLSFC 322

Query: 238 -GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAA 293
            GI+D  +  L+ + SL+ LNL +   I+D GLA L    G    LD  F  +I D+  +
Sbjct: 323 CGITDTGMISLSRMQSLRELNLRSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALS 382

Query: 294 YL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGL 350
           ++ +   NL+++ +    +TD GV + ++ L ++T LN+ Q   +TDK L LI+  L  L
Sbjct: 383 HISQGMPNLKNVSLSSCHITDEGVGRLVRSLHNMTTLNIGQCVRVTDKGLALIAEHLKEL 442

Query: 351 VSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
             +++   + IT+ GL  +  L  L  L L
Sbjct: 443 KCIDLYGCTMITTVGLERIMQLPCLTVLNL 472



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 159/303 (52%), Gaps = 26/303 (8%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 109
           ++G+  ++SLN+  C  +TD  +       +  L  L +S C ++TD+ +  + + L++L
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSLWRIEQYLKQL 229

Query: 110 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIG--------SLK 158
            +L+L GC        L     L  L  LNL  C+ +SD G    + +          L+
Sbjct: 230 EVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGTRDLE 289

Query: 159 VLNL-GFNEITDECLVHL-KGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLEL-SDTQ 214
           +L L    +++D  L+ + KGL  L SLNL   CGI D G+++L+ + +L+ L L S   
Sbjct: 290 LLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLSRMQSLRELNLRSCDN 349

Query: 215 VGSSGLRHLSGL-TNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL 271
           +   GL HL+    +  +++ SF   I D +L  ++ G+ +LK+++L +  ITD G+  L
Sbjct: 350 ISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITDEGVGRL 409

Query: 272 T-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICGGGL-TDAGVKHIKDLSSLTL 327
             SL  +T L++    R+TD G A +  + K L+ +++ G  + T  G++ I  L  LT+
Sbjct: 410 VRSLHNMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYGCTMITTVGLERIMQLPCLTV 469

Query: 328 LNL 330
           LNL
Sbjct: 470 LNL 472



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 84/252 (33%), Positives = 126/252 (50%), Gaps = 31/252 (12%)

Query: 33  LINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT------- 83
           L  L  LDL  C+ I   G LV  +GL KL+ LN++ C  I+D  +  L+G++       
Sbjct: 226 LKQLEVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGT 285

Query: 84  ---NLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNL 138
               L  LQ  C K++D+ +  + KGL KL  LNL   C +T   + SLS + SL  LNL
Sbjct: 286 RDLELLVLQ-DCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLSRMQSLRELNL 344

Query: 139 NRCQ-LSDDGCEKFSKI-GSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDE 194
             C  +SD G    ++  G    L+  F ++I D  L H+ +G+ NL++++L SC I DE
Sbjct: 345 RSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITDE 404

Query: 195 G-------LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRK 246
           G       L N+T L   +C+ ++D  +          L  L+ I+L   T I+   L +
Sbjct: 405 GVGRLVRSLHNMTTLNIGQCVRVTDKGLALIA----EHLKELKCIDLYGCTMITTVGLER 460

Query: 247 LAGLSSLKSLNL 258
           +  L  L  LNL
Sbjct: 461 IMQLPCLTVLNL 472



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 128/257 (49%), Gaps = 35/257 (13%)

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 225
           ++G+ N++SLNL  C  + D GL +        LT L    C +++DT +     R    
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSL----WRIEQY 225

Query: 226 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT-----GL 277
           L  LE ++L+  + I++  L  +A GL  LK LNL + R I+D G+  L  ++     G 
Sbjct: 226 LKQLEVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGT 285

Query: 278 THLDLF----GARITDSG-AAYLRNFKNLRSLEI---CGGGLTDAGVKHIKDLSSLTLLN 329
             L+L       +++D+   +  +    LRSL +   CG  +TD G+  +  + SL  LN
Sbjct: 286 RDLELLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCG--ITDTGMISLSRMQSLRELN 343

Query: 330 LSQNCNLTDKTLELISGLTG-LVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D  L  ++   G   +L+ S   +I  A L H+ + + NL++++L SC +T 
Sbjct: 344 LRSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITD 403

Query: 387 NDIKRLQSRDLPNLVSF 403
             + RL  R L N+ + 
Sbjct: 404 EGVGRL-VRSLHNMTTL 419



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 117/245 (47%), Gaps = 40/245 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNL-KG 56
           GL  L  L+ R    I+  G+   AG+         +L  L L+ C ++    L+++ KG
Sbjct: 251 GLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGTRDLELLVLQDCQKLSDTALMSIAKG 310

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGL-QKLTLLNL 114
           L KL SLN+ +C  ITD+ M  LS + +L+ L + SC  ++D G+A+L         L+ 
Sbjct: 311 LHKLRSLNLSFCCGITDTGMISLSRMQSLRELNLRSCDNISDIGLAHLAEYGGHFATLDA 370

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C  +  A L  +S  + +L  ++L+ C ++D+G      +G L               
Sbjct: 371 SFCDKIGDAALSHISQGMPNLKNVSLSSCHITDEG------VGRL--------------- 409

Query: 173 VHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
             ++ L N+ +LN+  C  + D+GL  +   L  LKC++L   T + + GL  +  L  L
Sbjct: 410 --VRSLHNMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYGCTMITTVGLERIMQLPCL 467

Query: 230 ESINL 234
             +NL
Sbjct: 468 TVLNL 472


>gi|302804592|ref|XP_002984048.1| hypothetical protein SELMODRAFT_445748 [Selaginella moellendorffii]
 gi|300148400|gb|EFJ15060.1| hypothetical protein SELMODRAFT_445748 [Selaginella moellendorffii]
          Length = 657

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 169/366 (46%), Gaps = 48/366 (13%)

Query: 50  GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK-GLQ 107
           GL+       L  +++ +C+ + DSD+  L+ ++NL++L+++ C  +TD G+  L  G +
Sbjct: 119 GLLARSCCASLTDVDLSYCSNLKDSDVLALAQISNLQALRLTGCHSITDIGLGCLAAGCK 178

Query: 108 KLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
            L LL L+GC         ++ +G +L  +N  +                L+ L+L + E
Sbjct: 179 MLKLLTLKGCL-------GITDIGIALVAVNCKQ----------------LRTLDLSYTE 215

Query: 167 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN-------LKCLELSDTQVGSS 218
           +TDE L  +  L +LE LNL SC  + D GL +L   C         +C  +SD  + + 
Sbjct: 216 VTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRSLLKLDVSRCSNVSDAGLAAL 275

Query: 219 GLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTG 276
              HLS    LE + LS+   I+D  L        L+S+ LD  +I   GL  +      
Sbjct: 276 ATSHLS----LEQLTLSYCSIITDDLLATFQKFDHLQSIVLDGCEIARNGLPFIARGCKQ 331

Query: 277 LTHLDLFGAR-ITDSG-AAYLRNFKNLRSLEI-CGGGLTDAGVKHI-KDLSSLTLLNLSQ 332
           L  L L   R +TD G AA  +    L  L + C   LTDA +  I KD   L  L + +
Sbjct: 332 LKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLCRISKDCKGLESLKM-E 390

Query: 333 NCNLT--DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDI 389
           +C+L   D    L  G   L  L+ +   ++  GL+++     LRSL L  C  +T   +
Sbjct: 391 SCSLITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALRSLKLGFCSTITDKGV 450

Query: 390 KRLQSR 395
             + +R
Sbjct: 451 AHIGAR 456



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 193/418 (46%), Gaps = 55/418 (13%)

Query: 35  NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-C 92
            L  LDL        GL ++  L  LE LN+  CN + D  ++ L     +L  L +S C
Sbjct: 205 QLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRSLLKLDVSRC 264

Query: 93  SKVTDSGIAYLK----GLQKLTL----------------------LNLEGCPVTAACLDS 126
           S V+D+G+A L      L++LTL                      + L+GC +    L  
Sbjct: 265 SNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQSIVLDGCEIARNGLPF 324

Query: 127 LS-ALGSLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHL-KGLTNL 181
           ++     L  L+L++C+ ++D G    ++   +L  LNL    E+TD  L  + K    L
Sbjct: 325 IARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLCRISKDCKGL 384

Query: 182 ESLNLDSCG-IGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TG 238
           ESL ++SC  I ++GL  L  G   L+ L+ ++  +  +GL+++S  T L S+ L F + 
Sbjct: 385 ESLKMESCSLITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALRSLKLGFCST 444

Query: 239 ISDGSLRKL-AGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAY 294
           I+D  +  + A   +L+ L+   ++ I D G+AA+ S    L  LDL + ++ITD     
Sbjct: 445 ITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYCSKITDCSLQS 504

Query: 295 LRNFKNLRSLEICGGGLTDAG-----VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
           L   + L+ +E+ G  L  +          K L+ + +   SQ  N     L       G
Sbjct: 505 LSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNAGVSALSFFC--PG 562

Query: 350 LVSLNVSNSRITSAGLRHLKPLKNLRSLTL-------ESCKVTA-NDIKRLQSRDLPN 399
           L  +N+S   I++AGL  L  L  L+S+ L         C VT   + K L++  LP+
Sbjct: 563 LRMMNISYCPISNAGLLSLPRLSCLQSVRLVHLKNVTVDCFVTVLQNCKSLKNVKLPS 620



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 101/231 (43%), Gaps = 29/231 (12%)

Query: 11  LTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 69
           L SL     + IT  G+     G   L +LD   C     GL  +     L SL + +C+
Sbjct: 384 LESLKMESCSLITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALRSLKLGFCS 443

Query: 70  CITDSDMKPLSG-LTNLKSLQISCSK-VTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLD 125
            ITD  +  +     NL+ L    SK + D+G+A +  G  KL LL+L  C  +T   L 
Sbjct: 444 TITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYCSKITDCSLQ 503

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           SLS L  L  + L        GC   S  G L V+  G   +T+              ++
Sbjct: 504 SLSQLRELQRVELR-------GCVLVSSTG-LAVMASGCKRLTE--------------ID 541

Query: 186 LDSCG-IGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +  C  IG+ G+  L+  C  L+ + +S   + ++GL  L  L+ L+S+ L
Sbjct: 542 IKRCSQIGNAGVSALSFFCPGLRMMNISYCPISNAGLLSLPRLSCLQSVRL 592



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 97/189 (51%), Gaps = 10/189 (5%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRI-HGGLVNLK-GLMKLE 61
           +S  + L SL     + IT +G+    A   NL +LD  R   I   G+  +  G  KL+
Sbjct: 428 ISKCTALRSLKLGFCSTITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLK 487

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC-P 118
            L++ +C+ ITD  ++ LS L  L+ +++  C  V+ +G+A +  G ++LT ++++ C  
Sbjct: 488 LLDLSYCSKITDCSLQSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQ 547

Query: 119 VTAACLDSLSAL-GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 176
           +  A + +LS     L  +N++ C +S+ G     ++  L+ + L     +T +C V + 
Sbjct: 548 IGNAGVSALSFFCPGLRMMNISYCPISNAGLLSLPRLSCLQSVRLVHLKNVTVDCFVTV- 606

Query: 177 GLTNLESLN 185
            L N +SL 
Sbjct: 607 -LQNCKSLK 614


>gi|195430566|ref|XP_002063325.1| GK21848 [Drosophila willistoni]
 gi|194159410|gb|EDW74311.1| GK21848 [Drosophila willistoni]
          Length = 543

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 159/302 (52%), Gaps = 28/302 (9%)

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLK 158
           G+  LT LNL GC    A ++   A    L +L  L+L+ C Q++D    + ++ + +L+
Sbjct: 237 GVPALTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLE 295

Query: 159 VLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKC 207
            L LG   N      L+   GL  L+ LNL SC  I D+G+ +L G           L+ 
Sbjct: 296 TLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 355

Query: 208 LELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 263
           L L D Q +    L H++ GLT+L+SINLSF   ++D  L+ LA +  L+ LNL +   I
Sbjct: 356 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNI 415

Query: 264 TDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI- 319
           +D G+A LT   +G+  LD+ F  +I+D    ++ +    LRSL +    +TD G+  I 
Sbjct: 416 SDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIA 475

Query: 320 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSL 377
           K L  L  LN+ Q   +TDK L+ L   LT L ++++   +++TS G+  +  L  L+ L
Sbjct: 476 KSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLTSKGIDIIMKLPKLQKL 535

Query: 378 TL 379
            L
Sbjct: 536 NL 537



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 40/245 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVN--LKG 56
           GL  L  L+ R    I+ QG+   AG         + L  L L+ C R+    +    +G
Sbjct: 316 GLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQG 375

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L  L+S+N+ +C  +TDS +K L+ +  L+ L + SC  ++D G+AYL +G   +  L++
Sbjct: 376 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 435

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C  ++   L  ++  L  L  L+LN+CQ++D G  K +                    
Sbjct: 436 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIA-------------------- 475

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
              K L  LE+LN+  C  I D+GL  L   L NLK ++L   TQ+ S G+  +  L  L
Sbjct: 476 ---KSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLTSKGIDIIMKLPKL 532

Query: 230 ESINL 234
           + +NL
Sbjct: 533 QKLNL 537



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 34/237 (14%)

Query: 177 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 227
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 237 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 295

Query: 228 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 278
            LE     N++ TG+    L    GL  LK LNL +   I+D G+  L   +  T     
Sbjct: 296 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 351

Query: 279 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 331
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 352 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 410

Query: 332 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 385
              N++D  +  L  G +G+ SL+VS   +I+   L H+ + L  LRSL+L  C++T
Sbjct: 411 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 467


>gi|302753328|ref|XP_002960088.1| hypothetical protein SELMODRAFT_437235 [Selaginella moellendorffii]
 gi|300171027|gb|EFJ37627.1| hypothetical protein SELMODRAFT_437235 [Selaginella moellendorffii]
          Length = 657

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 169/366 (46%), Gaps = 48/366 (13%)

Query: 50  GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK-GLQ 107
           GL+       L  +++ +C+ + DSD+  L+ ++NL++L+++ C  +TD G+  L  G +
Sbjct: 119 GLLARSCCASLTDVDLSYCSNLKDSDVLALAQISNLQALRLTGCHSITDIGLGCLAAGCK 178

Query: 108 KLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
            L LL L+GC         ++ +G +L  +N  +                L+ L+L + E
Sbjct: 179 MLKLLTLKGCL-------GITDIGIALVAVNCKQ----------------LRTLDLSYTE 215

Query: 167 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN-------LKCLELSDTQVGSS 218
           +TDE L  +  L +LE LNL SC  + D GL +L   C         +C  +SD  + + 
Sbjct: 216 VTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRSLLKLDVSRCSNVSDAGLAAL 275

Query: 219 GLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTG 276
              HLS    LE + LS+   I+D  L        L+S+ LD  +I   GL  +      
Sbjct: 276 ATSHLS----LEQLTLSYCSIITDDLLATFQKFDHLQSIVLDGCEIARNGLPFIARGCKQ 331

Query: 277 LTHLDLFGAR-ITDSG-AAYLRNFKNLRSLEI-CGGGLTDAGVKHI-KDLSSLTLLNLSQ 332
           L  L L   R +TD G AA  +    L  L + C   LTDA +  I KD   L  L + +
Sbjct: 332 LKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLCRISKDCKGLESLKM-E 390

Query: 333 NCNLT--DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDI 389
           +C+L   D    L  G   L  L+ +   ++  GL+++     LRSL L  C  +T   +
Sbjct: 391 SCSLITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALRSLKLGFCSTITDKGV 450

Query: 390 KRLQSR 395
             + +R
Sbjct: 451 AHIGAR 456



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 119/418 (28%), Positives = 192/418 (45%), Gaps = 55/418 (13%)

Query: 35  NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-C 92
            L  LDL        GL ++  L  LE LN+  CN + D  ++ L     +L  L +S C
Sbjct: 205 QLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRSLLKLDVSRC 264

Query: 93  SKVTDSGIAYLK----GLQKLTL----------------------LNLEGCPVTAACLDS 126
           S V+D+G+A L      L++LTL                      + L+GC +    L  
Sbjct: 265 SNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQSIVLDGCEIARNGLPF 324

Query: 127 LS-ALGSLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHL-KGLTNL 181
           ++     L  L+L++C+ ++D G    ++   +L  LNL    E+TD  L  + K    L
Sbjct: 325 IARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLCRISKDCKGL 384

Query: 182 ESLNLDSCG-IGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TG 238
           ESL ++SC  I ++GL  L  G   L+ L+ ++  +  +GL+++S  T L S+ L F + 
Sbjct: 385 ESLKMESCSLITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALRSLKLGFCST 444

Query: 239 ISDGSLRKL-AGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAY 294
           I+D  +  + A   +L+ L+   ++ I D G+AA+ S    L  LDL + ++ITD     
Sbjct: 445 ITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYCSKITDCSLQS 504

Query: 295 LRNFKNLRSLEICGGGLTDAG-----VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
           L   + L+ LE+ G  L  +          K L+ + +   SQ  N     L       G
Sbjct: 505 LSQLRELQRLELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNAGVSALSFFC--PG 562

Query: 350 LVSLNVSNSRITSAGLRHLKPLKNLRSLTL-------ESCKVTA-NDIKRLQSRDLPN 399
           L  +N+S   I+ AGL  L  L  L+S+ L         C VT   + K L++  LP+
Sbjct: 563 LRMMNISYCPISKAGLLSLPRLSCLQSVRLVHLKNVTVDCFVTVLQNCKSLKNVKLPS 620



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 100/231 (43%), Gaps = 29/231 (12%)

Query: 11  LTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 69
           L SL     + IT  G+     G   L +LD   C     GL  +     L SL + +C+
Sbjct: 384 LESLKMESCSLITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALRSLKLGFCS 443

Query: 70  CITDSDMKPLSG-LTNLKSLQISCSK-VTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLD 125
            ITD  +  +     NL+ L    SK + D+G+A +  G  KL LL+L  C  +T   L 
Sbjct: 444 TITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYCSKITDCSLQ 503

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           SLS L  L  L L        GC   S  G L V+  G   +T+              ++
Sbjct: 504 SLSQLRELQRLELR-------GCVLVSSTG-LAVMASGCKRLTE--------------ID 541

Query: 186 LDSCG-IGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +  C  IG+ G+  L+  C  L+ + +S   +  +GL  L  L+ L+S+ L
Sbjct: 542 IKRCSQIGNAGVSALSFFCPGLRMMNISYCPISKAGLLSLPRLSCLQSVRL 592



 Score = 44.3 bits (103), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 97/191 (50%), Gaps = 10/191 (5%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRI-HGGLVNLK-GLMK 59
           + +S  + L SL     + IT +G+    A   NL +LD  R   I   G+  +  G  K
Sbjct: 426 KYISKCTALRSLKLGFCSTITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPK 485

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 117
           L+ L++ +C+ ITD  ++ LS L  L+ L++  C  V+ +G+A +  G ++LT ++++ C
Sbjct: 486 LKLLDLSYCSKITDCSLQSLSQLRELQRLELRGCVLVSSTGLAVMASGCKRLTEIDIKRC 545

Query: 118 -PVTAACLDSLSAL-GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 174
             +  A + +LS     L  +N++ C +S  G     ++  L+ + L     +T +C V 
Sbjct: 546 SQIGNAGVSALSFFCPGLRMMNISYCPISKAGLLSLPRLSCLQSVRLVHLKNVTVDCFVT 605

Query: 175 LKGLTNLESLN 185
           +  L N +SL 
Sbjct: 606 V--LQNCKSLK 614


>gi|290986246|ref|XP_002675835.1| predicted protein [Naegleria gruberi]
 gi|284089434|gb|EFC43091.1| predicted protein [Naegleria gruberi]
          Length = 820

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 2/198 (1%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L LN+C  S++      K+  L +L+  +N I DE    +  +  L SL++    IG EG
Sbjct: 606 LTLNKCP-SNELINFLKKMKQLTLLDFIYN-IGDEGAKLISEMKQLTSLDISENNIGVEG 663

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
              ++ +  L  L +   ++G  G++++S +  L S+++S+  I     + ++ +  L S
Sbjct: 664 AKYISEMKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTS 723

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L++    I   G   ++ +  LT LD+   +I D GA Y+   K L SL I    +   G
Sbjct: 724 LDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEG 783

Query: 316 VKHIKDLSSLTLLNLSQN 333
           VK+I ++  LT L++S N
Sbjct: 784 VKYISEMKQLTSLDISYN 801



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 13/206 (6%)

Query: 100 IAYLKGLQKLTLLNL------EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
           I +LK +++LTLL+       EG  +       +S +  L  L+++   +  +G +  S+
Sbjct: 617 INFLKKMKQLTLLDFIYNIGDEGAKL-------ISEMKQLTSLDISENNIGVEGAKYISE 669

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
           +  L  LN+  NEI  E + ++  +  L SL++    IG EG   ++ +  L  L++S+ 
Sbjct: 670 MKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTSLDISEN 729

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
            +G  G +++S +  L S+++++  I D   + ++ +  L SLN+   +I   G+  ++ 
Sbjct: 730 NIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEGVKYISE 789

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFK 299
           +  LT LD+   +I   GA YL   K
Sbjct: 790 MKQLTSLDISYNKIGVEGAKYLSEMK 815



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 2/217 (0%)

Query: 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
           L L  CP +   ++ L  +  L  L+     + D+G +  S++  L  L++  N I  E 
Sbjct: 606 LTLNKCP-SNELINFLKKMKQLTLLDF-IYNIGDEGAKLISEMKQLTSLDISENNIGVEG 663

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
             ++  +  L SLN+    IG EG+  ++ +  L  L++S  ++G  G +++S +  L S
Sbjct: 664 AKYISEMKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTS 723

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           +++S   I     + ++ +  L SL+++  +I D G   ++ +  LT L++    I   G
Sbjct: 724 LDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEG 783

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
             Y+   K L SL+I    +   G K++ ++ + T+ 
Sbjct: 784 VKYISEMKQLTSLDISYNKIGVEGAKYLSEMKTKTIY 820



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 87/169 (51%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I D   K +S +  L SL IS + +   G  Y+  +++LT LN+    +    +  +S +
Sbjct: 635 IGDEGAKLISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLNICRNEIGVEGVKYISEM 694

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
             L  L+++  ++  +G +  S++  L  L++  N I  E   ++  +  L SL+++   
Sbjct: 695 KQLTSLDISYNKIGVEGAKYISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYNK 754

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           IGDEG   ++ +  L  L +   ++G  G++++S +  L S+++S+  I
Sbjct: 755 IGDEGAKYISKMKQLTSLNIRRNEIGVEGVKYISEMKQLTSLDISYNKI 803



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 90/184 (48%)

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 154
           + D G   +  +++LT L++    +       +S +  L  LN+ R ++  +G +  S++
Sbjct: 635 IGDEGAKLISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLNICRNEIGVEGVKYISEM 694

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
             L  L++ +N+I  E   ++  +  L SL++    IG EG   ++ +  L  L+++  +
Sbjct: 695 KQLTSLDISYNKIGVEGAKYISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYNK 754

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           +G  G +++S +  L S+N+    I    ++ ++ +  L SL++   +I   G   L+ +
Sbjct: 755 IGDEGAKYISKMKQLTSLNIRRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYLSEM 814

Query: 275 TGLT 278
              T
Sbjct: 815 KTKT 818


>gi|343418611|emb|CCD19670.1| hypothetical protein, conserved in T. vivax [Trypanosoma vivax
           Y486]
          Length = 840

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 170/369 (46%), Gaps = 12/369 (3%)

Query: 35  NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCS 93
           +L  LDL  CT I  GL  L GL  L+ L + W  C+ D+ ++ L+    L+ L + SC+
Sbjct: 3   SLEMLDLNDCTGIVRGLHVLCGLTTLQELCL-WQLCVDDALLRDLTCHERLRELSLNSCT 61

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
           ++TD  ++ L  ++ L +LNL  C      L  L  L +L  L L    + D      + 
Sbjct: 62  RITD--VSPLARMRSLEILNLNDCTGIVRGLHVLCGLTTLQELCLANVNVDDAFVRDLTC 119

Query: 154 IGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 212
              L+ L+L     ITD  +  L  + +LE LNL+ C     GL  L GL  L+ L L  
Sbjct: 120 HERLRRLSLNSCTRITD--VSPLARMRSLEMLNLNDCTGIVRGLHELCGLTTLQELYLPK 177

Query: 213 TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
             V  + LR L+    L  ++L S T I+D S   LA + SL+ L+L+       GL  L
Sbjct: 178 VYVDDAFLRDLTCHERLRRLSLNSCTRITDVS--PLARMRSLEMLDLNGCIGIVRGLHEL 235

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
             LT L  L L+   + ++    L   + LR L +         V  +  + SL +L+L+
Sbjct: 236 CGLTTLQELYLWQLCVDNAFLRDLTCHERLRRLSL-NSCTRITDVSPLARMRSLEMLDLN 294

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
            +C    + L  + GLT L  L +    +  A LR L   + LR L+L SC    +    
Sbjct: 295 -DCTGIVRGLHELCGLTTLQELYLWQLCVDDAFLRDLTCHERLRRLSLNSCTRITDVSPL 353

Query: 392 LQSRDLPNL 400
            + R L NL
Sbjct: 354 ARMRSLENL 362



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 184/387 (47%), Gaps = 14/387 (3%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           N+      +   A + +L  LDL  C  I  GL  L GL  L+ L + W  C+ ++ ++ 
Sbjct: 200 NSCTRITDVSPLARMRSLEMLDLNGCIGIVRGLHELCGLTTLQELYL-WQLCVDNAFLRD 258

Query: 79  LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           L+    L+ L + SC+++TD  ++ L  ++ L +L+L  C      L  L  L +L  L 
Sbjct: 259 LTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLDLNDCTGIVRGLHELCGLTTLQELY 316

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           L +  + D      +    L+ L+L     ITD  +  L  + +LE+L+L+ C     GL
Sbjct: 317 LWQLCVDDAFLRDLTCHERLRRLSLNSCTRITD--VSPLARMRSLENLDLNDCTGIVRGL 374

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKS 255
             L GL  L+ L L    V  + +R L+    L  ++L S T I++ S   LA + SL+ 
Sbjct: 375 HVLCGLTTLQELCLWQLCVDDAFVRDLTCHERLRRLSLNSCTRITNVS--PLARMRSLEI 432

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           LNL+       GL  L  LT L  L L+   + D+    L   + LR L +         
Sbjct: 433 LNLNGCTGIVRGLHVLCGLTTLQELYLWQLCVDDAFLRDLTCHERLRRLSL-NSCTRITD 491

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
           V  +  + SL +L+L+  C    + L ++ GLT L  L ++   +  A LR L   + LR
Sbjct: 492 VSPLARMRSLEMLDLN-GCTGIVRGLHVLCGLTTLQELCLAEVPVNDALLRDLTCHERLR 550

Query: 376 SLTLESC-KVT-ANDIKRLQSRDLPNL 400
            L+L SC ++T  + + R++S ++ +L
Sbjct: 551 ELSLNSCTRITDVSPLARMRSLEMLDL 577



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 185/387 (47%), Gaps = 14/387 (3%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           N+      +   A + +L  L+L  CT I  GL  L GL  L+ L + W  C+ D+ ++ 
Sbjct: 413 NSCTRITNVSPLARMRSLEILNLNGCTGIVRGLHVLCGLTTLQELYL-WQLCVDDAFLRD 471

Query: 79  LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           L+    L+ L + SC+++TD  ++ L  ++ L +L+L GC      L  L  L +L  L 
Sbjct: 472 LTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLDLNGCTGIVRGLHVLCGLTTLQELC 529

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           L    ++D      +    L+ L+L     ITD  +  L  + +LE L+L+ C     GL
Sbjct: 530 LAEVPVNDALLRDLTCHERLRELSLNSCTRITD--VSPLARMRSLEMLDLNDCTGIVRGL 587

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKS 255
             L GL  L+ L L    V ++ LR L+    L  ++L S T I+D S   LA + SL+ 
Sbjct: 588 HELCGLTTLQELCLWQLCVDNAFLRDLTCHERLRRLSLNSCTRITDVS--PLARMRSLEM 645

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L+L+       GL  L  LT L  L L+   + ++    L   + LR L +         
Sbjct: 646 LDLNGCIGIVRGLHELCGLTTLQELYLWQLCVDNAFLRDLTCHERLRRLSL-NSCTRITD 704

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
           V  +  + SL +L+L+ +C    + L  + GLT L  L +    +  A LR L   + LR
Sbjct: 705 VSPLARMRSLEMLDLN-DCTGIVRGLHELCGLTTLQELYLWQLCVDDAFLRDLTCHERLR 763

Query: 376 SLTLESC-KVT-ANDIKRLQSRDLPNL 400
            L+L SC ++T  + + R++S ++ +L
Sbjct: 764 RLSLNSCTRITDVSPLARMRSLEMLDL 790



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 183/388 (47%), Gaps = 16/388 (4%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           N+      +   A + +L  LDL  CT I  GL  L GL  L+ L + W  C+ D+ ++ 
Sbjct: 271 NSCTRITDVSPLARMRSLEMLDLNDCTGIVRGLHELCGLTTLQELYL-WQLCVDDAFLRD 329

Query: 79  LSGLTNLKSLQI-SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           L+    L+ L + SC+++TD S +A ++ L+ L   +L  C      L  L  L +L  L
Sbjct: 330 LTCHERLRRLSLNSCTRITDVSPLARMRSLENL---DLNDCTGIVRGLHVLCGLTTLQEL 386

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
            L +  + D      +    L+ L+L     IT+  +  L  + +LE LNL+ C     G
Sbjct: 387 CLWQLCVDDAFVRDLTCHERLRRLSLNSCTRITN--VSPLARMRSLEILNLNGCTGIVRG 444

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 254
           L  L GL  L+ L L    V  + LR L+    L  ++L S T I+D S   LA + SL+
Sbjct: 445 LHVLCGLTTLQELYLWQLCVDDAFLRDLTCHERLRRLSLNSCTRITDVS--PLARMRSLE 502

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
            L+L+       GL  L  LT L  L L    + D+    L   + LR L +        
Sbjct: 503 MLDLNGCTGIVRGLHVLCGLTTLQELCLAEVPVNDALLRDLTCHERLRELSL-NSCTRIT 561

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
            V  +  + SL +L+L+ +C    + L  + GLT L  L +    + +A LR L   + L
Sbjct: 562 DVSPLARMRSLEMLDLN-DCTGIVRGLHELCGLTTLQELCLWQLCVDNAFLRDLTCHERL 620

Query: 375 RSLTLESC-KVT-ANDIKRLQSRDLPNL 400
           R L+L SC ++T  + + R++S ++ +L
Sbjct: 621 RRLSLNSCTRITDVSPLARMRSLEMLDL 648


>gi|384252696|gb|EIE26172.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
          Length = 663

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 23/225 (10%)

Query: 175 LKGLTNLESLNL--DSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLES 231
           LK LT L SL +  DS       +  L+ L +L+ L L++   +   GL +LS LT+L  
Sbjct: 245 LKSLTKLSSLRMRNDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTNLSALTDLRQ 304

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           + L   G+++G LR    L+ L+SL++ DA ++TDTGL  L+SLTGLTHLD         
Sbjct: 305 LRLVKVGVTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDF-------C 357

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
             ++ R+             +T+AGV  +  L++L  LNL+ +  +T + L  ++  T L
Sbjct: 358 SPSHRRD-----------EDITNAGVAALSALTNLRSLNLAGHSEVTAEGLAFLADATAL 406

Query: 351 VSLNVSNSRI-TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
             L++S   +  + G+  L  L NLRSL L+  +++   +++L S
Sbjct: 407 TCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSNEHVQQLGS 451



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 152/331 (45%), Gaps = 24/331 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQG---MKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMK 59
           L GLS L  L F   NA+   G   +   + L  L +L++      +   G   LK L K
Sbjct: 194 LGGLSRLQHLQF---NAVAFDGRTLISKLSSLQGLRQLEMANVVGAYPAEGDAFLKSLTK 250

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTD---SGIAYLKGLQKLTLLNLE 115
           L SL ++  N    + + P+  L+ L+SLQ +S ++       G+  L  L  L  L L 
Sbjct: 251 LSSLRMR--NDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTNLSALTDLRQLRLV 308

Query: 116 GCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGF------NEIT 168
              VT   L    AL  L  L++ +  +++D G    S +  L  L+          +IT
Sbjct: 309 KVGVTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDFCSPSHRRDEDIT 368

Query: 169 DECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-LRHLSGL 226
           +  +  L  LTNL SLNL     +  EGL  L     L CL+LS   +G +G +  L+ L
Sbjct: 369 NAGVAALSALTNLRSLNLAGHSEVTAEGLAFLADATALTCLDLSGLPLGPTGGVDFLASL 428

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
           TNL S+ L  T +S+  +++L  L++L SL L    I D   AAL  LT L  LD+    
Sbjct: 429 TNLRSLCLQRTQLSNEHVQQLGSLTALTSLGLAWCAIDDEAAAALAPLTKLADLDVRYCP 488

Query: 287 ITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 316
           +T++G   L R   +L    + G   T  G+
Sbjct: 489 MTNAGLCQLSRAMPDLAIFAVEGCPATSIGI 519



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 102/220 (46%), Gaps = 23/220 (10%)

Query: 191 IGDEGLVNLTGLCNLKCLELS----DTQVGSSGLRHLSGLTNLESINL--SFTGISDGSL 244
           I +   V L GL  L+ L+ +    D +   S L  L GL  LE  N+  ++    D  L
Sbjct: 186 ITERDAVLLGGLSRLQHLQFNAVAFDGRTLISKLSSLQGLRQLEMANVVGAYPAEGDAFL 245

Query: 245 RKLAGLSSLKSLN--LDARQITDTGLAALTSLTGLT---HLDLFGARITDSGAAYLRNFK 299
           + L  LSSL+  N    A+      L+ L SL  L+   HL L    +T+     L    
Sbjct: 246 KSLTKLSSLRMRNDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTN-----LSALT 300

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV---S 356
           +LR L +   G+T+  ++    L+ L  L++     +TD  L  +S LTGL  L+    S
Sbjct: 301 DLRQLRLVKVGVTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDFCSPS 360

Query: 357 NSR---ITSAGLRHLKPLKNLRSLTLE-SCKVTANDIKRL 392
           + R   IT+AG+  L  L NLRSL L    +VTA  +  L
Sbjct: 361 HRRDEDITNAGVAALSALTNLRSLNLAGHSEVTAEGLAFL 400


>gi|421897504|ref|ZP_16327872.1| type III effector protein gala5 [Ralstonia solanacearum MolK2]
 gi|206588710|emb|CAQ35673.1| type III effector protein gala5 [Ralstonia solanacearum MolK2]
          Length = 533

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 1/282 (0%)

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           +L  S + V   G+  L   + LT L+L    +  A    L A   L  LN+NR ++   
Sbjct: 216 TLNASRNGVGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNRNRIDVQ 275

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           G    +   +L  L++G N I D  +  L     L +LN++  G+G  G+  L     L 
Sbjct: 276 GARALADCKTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAGVGAHGVQALADSKTLT 335

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            L + +  +G  G + L+  T+L +++    GI     + LA  + L +LNL    I D 
Sbjct: 336 SLRIDNNNIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDA 395

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
           G  A  + T L  L +    ++D+GA  L   K L +L+     + DAG + +    +LT
Sbjct: 396 GAQAWLANTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLT 455

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
            L++S N  + +     ++  T L SL++ N+R+  AG+R L
Sbjct: 456 TLDVSSN-EIGNAGARALAANTRLASLDLRNNRMLEAGVRAL 496



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 125/266 (46%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N + D++ + L     L +L ++ +++   G   L   + LT L++ G  +  A +++L 
Sbjct: 246 NGLGDAEAQRLGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEALL 305

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
           A   L  LN+ R  +   G +  +   +L  L +  N I DE    L   T+L +L+ +S
Sbjct: 306 ANAQLTTLNVERAGVGAHGVQALADSKTLTSLRIDNNNIGDEGAKTLAASTSLTTLHSES 365

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
            GIG  G   L     L  L L    +G +G +     T L S+++   G+SD    +LA
Sbjct: 366 NGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRLA 425

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
              +L +L+     I D G  AL +   LT LD+    I ++GA  L     L SL++  
Sbjct: 426 ASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSNEIGNAGARALAANTRLASLDLRN 485

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNC 334
             + +AGV+ +    +L+ L +S NC
Sbjct: 486 NRMLEAGVRALLVNRTLSSLGVSFNC 511


>gi|157865947|ref|XP_001681680.1| putative surface antigen protein [Leishmania major strain Friedlin]
 gi|68124978|emb|CAJ02759.1| putative surface antigen protein [Leishmania major strain Friedlin]
          Length = 610

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 159/343 (46%), Gaps = 2/343 (0%)

Query: 46  RIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 104
           ++ G L  +   +  LESL+I+ C  I+ +     S + +L  L +  +KV+ S      
Sbjct: 143 KVSGTLPASWHSMTSLESLSIEKCESISGALPPQWSSMKSLSFLNLDGAKVSGSLPPQWS 202

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
            ++ L  L+L    V+ +     S++  L +LNL+  ++S     ++S +  L VL++  
Sbjct: 203 SMKSLRTLDLGDTQVSGSLPPQWSSMTLLSFLNLDGAKVSGALPPQWSSMTLLAVLDVQG 262

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
            +++         + +L  LNL    I        + + +L  L++  TQV  +     S
Sbjct: 263 TQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAVLDVQGTQVSGTLPPQWS 322

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
            +T+L S+++  T +S     + + ++SL +LNL   Q++ T     +S+T LT LD+ G
Sbjct: 323 LMTSLTSLDVQGTQVSGSVPPQWSSMTSLTALNLRGTQVSGTLPPQWSSMTSLTSLDVQG 382

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
            +++ +      +  +L +L++ G  ++         +  LT L L+          E  
Sbjct: 383 TQVSGTLPPQWSSMTSLAALDVQGTQVSGTLPPQWSSMRRLTHLLLTDTLLSGTLPAEW- 441

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387
           S L  LV+L +S+S+++         +   +SL L+ C ++ +
Sbjct: 442 SALQSLVTLQLSSSKVSGTLPPQWSGMSKAQSLQLQDCDLSGS 484



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 125/281 (44%), Gaps = 26/281 (9%)

Query: 106 LQKLTLLNL------------------------EGCP-VTAACLDSLSALGSLFYLNLNR 140
           L+KLT L L                        E C  ++ A     S++ SL +LNL+ 
Sbjct: 131 LEKLTFLTLLGNKVSGTLPASWHSMTSLESLSIEKCESISGALPPQWSSMKSLSFLNLDG 190

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
            ++S     ++S + SL+ L+LG  +++         +T L  LNLD   +        +
Sbjct: 191 AKVSGSLPPQWSSMKSLRTLDLGDTQVSGSLPPQWSSMTLLSFLNLDGAKVSGALPPQWS 250

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
            +  L  L++  TQV  +     S + +L  +NL  T IS     + + ++SL  L++  
Sbjct: 251 SMTLLAVLDVQGTQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAVLDVQG 310

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
            Q++ T     + +T LT LD+ G +++ S      +  +L +L + G  ++        
Sbjct: 311 TQVSGTLPPQWSLMTSLTSLDVQGTQVSGSVPPQWSSMTSLTALNLRGTQVSGTLPPQWS 370

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
            ++SLT L++ Q   ++       S +T L +L+V  ++++
Sbjct: 371 SMTSLTSLDV-QGTQVSGTLPPQWSSMTSLAALDVQGTQVS 410



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 112/238 (47%), Gaps = 2/238 (0%)

Query: 149 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 207
           + +SK+  L  L L  N+++         +T+LESL+++ C  I        + + +L  
Sbjct: 126 DSWSKLEKLTFLTLLGNKVSGTLPASWHSMTSLESLSIEKCESISGALPPQWSSMKSLSF 185

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267
           L L   +V  S     S + +L +++L  T +S     + + ++ L  LNLD  +++   
Sbjct: 186 LNLDGAKVSGSLPPQWSSMKSLRTLDLGDTQVSGSLPPQWSSMTLLSFLNLDGAKVSGAL 245

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
               +S+T L  LD+ G +++ +      + K+L  L + G  ++ +       ++SL +
Sbjct: 246 PPQWSSMTLLAVLDVQGTQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAV 305

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           L++ Q   ++       S +T L SL+V  ++++ +       + +L +L L   +V+
Sbjct: 306 LDV-QGTQVSGTLPPQWSLMTSLTSLDVQGTQVSGSVPPQWSSMTSLTALNLRGTQVS 362



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 117/254 (46%), Gaps = 5/254 (1%)

Query: 8   LSNLTSLSFRRNNAITAQGM--KAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLN 64
            S++T LSF   +     G     ++ +  L  LD++  T++ G L      MK L  LN
Sbjct: 225 WSSMTLLSFLNLDGAKVSGALPPQWSSMTLLAVLDVQG-TQVSGTLPPQWSSMKSLSVLN 283

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           ++    I+ S     S +T+L  L +  ++V+ +       +  LT L+++G  V+ +  
Sbjct: 284 LR-GTSISGSVPPQWSSMTSLAVLDVQGTQVSGTLPPQWSLMTSLTSLDVQGTQVSGSVP 342

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
              S++ SL  LNL   Q+S     ++S + SL  L++   +++         +T+L +L
Sbjct: 343 PQWSSMTSLTALNLRGTQVSGTLPPQWSSMTSLTSLDVQGTQVSGTLPPQWSSMTSLAAL 402

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           ++    +        + +  L  L L+DT +  +     S L +L ++ LS + +S    
Sbjct: 403 DVQGTQVSGTLPPQWSSMRRLTHLLLTDTLLSGTLPAEWSALQSLVTLQLSSSKVSGTLP 462

Query: 245 RKLAGLSSLKSLNL 258
            + +G+S  +SL L
Sbjct: 463 PQWSGMSKAQSLQL 476


>gi|256395747|ref|YP_003117311.1| hypothetical protein Caci_6624 [Catenulispora acidiphila DSM 44928]
 gi|256361973|gb|ACU75470.1| hypothetical protein Caci_6624 [Catenulispora acidiphila DSM 44928]
          Length = 175

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 2/124 (1%)

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 209
           +F  +G+ +V     + +T E LV L G+  L +LNL++  IGD+ L  +  L  L+ L+
Sbjct: 7   RFFDVGAERVY--ADDRVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLD 64

Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 269
           +S T +  +G+RHLSGLT++  + +  T ++D  LR LA + +L+++NL    I+D GL 
Sbjct: 65  VSTTDITDAGVRHLSGLTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLR 124

Query: 270 ALTS 273
            L  
Sbjct: 125 GLAE 128



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 7/151 (4%)

Query: 42  ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 101
           +R TR    LV L G+ +L +LN+     I D D++ +  L  L+ L +S + +TD+G+ 
Sbjct: 20  DRVTR--EDLVALAGMPRLRALNLNTA-AIGDDDLEAVGRLVGLQDLDVSTTDITDAGVR 76

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161
           +L GL  +  L ++   VT A L  L+ +G+L  +NL R  +SD+G    ++    + L+
Sbjct: 77  HLSGLTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLRGLAE--RHRCLD 134

Query: 162 -LGFNEITDECLVHLKGLTNLESLNLDSCGI 191
            +  ++  DEC   + GL  ++ L L +C I
Sbjct: 135 TIVISDEVDECRFTVAGLAEVQRL-LPACEI 164



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 53/98 (54%)

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
           E LV L G+  L+ L L+   +G   L  +  L  L+ +++S T I+D  +R L+GL+ +
Sbjct: 25  EDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLSGLTDM 84

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           + L +   ++TD GL  L  +  L  ++L    I+D G
Sbjct: 85  RHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEG 122



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 211 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 270
           +D +V    L  L+G+  L ++NL+   I D  L  +  L  L+ L++    ITD G+  
Sbjct: 18  ADDRVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRH 77

Query: 271 LTSLTGLTHLDLFGARITDSGAAYLRNFK-----NLRSLEICGGGLTDAGVKHIKDLSSL 325
           L+ LT + HL +   R+TD+G   L         NLR L+I   GL     +H + L ++
Sbjct: 78  LSGLTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLRGLAERH-RCLDTI 136

Query: 326 TLLNLSQNCNLT 337
            + +    C  T
Sbjct: 137 VISDEVDECRFT 148



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 24/130 (18%)

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           VT   L +L+ +  L  LNLN   + DD  E   ++  L+ L++   +ITD  + HL GL
Sbjct: 22  VTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLSGL 81

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           T                        +++ L + +T+V  +GLR L+ +  LE++NL    
Sbjct: 82  T------------------------DMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLD 117

Query: 239 ISDGSLRKLA 248
           ISD  LR LA
Sbjct: 118 ISDEGLRGLA 127



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 49/149 (32%)

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           LAG+  L++LNL+   I D  L A+  L GL  LD+     TD                 
Sbjct: 30  LAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDV---STTD----------------- 69

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
               +TDAGV+H+                         SGLT +  L +  +R+T AGLR
Sbjct: 70  ----ITDAGVRHL-------------------------SGLTDMRHLRIKETRVTDAGLR 100

Query: 367 HLKPLKNLRSLTLESCKVTANDIKRLQSR 395
            L P+  L ++ L    ++   ++ L  R
Sbjct: 101 LLAPMGALETVNLRRLDISDEGLRGLAER 129



 Score = 42.0 bits (97), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 51/108 (47%)

Query: 93  SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 152
            +VT   +  L G+ +L  LNL    +    L+++  L  L  L+++   ++D G    S
Sbjct: 20  DRVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLS 79

Query: 153 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
            +  ++ L +    +TD  L  L  +  LE++NL    I DEGL  L 
Sbjct: 80  GLTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLRGLA 127


>gi|320163976|gb|EFW40875.1| tyrosine-protein kinase CSK [Capsaspora owczarzaki ATCC 30864]
          Length = 1378

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 159/371 (42%), Gaps = 7/371 (1%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           SG+   T+  + ++N IT     AF GL  + ++ L   +   I  G     GL  L  +
Sbjct: 55  SGIPVNTTQLYLQSNLITNIPASAFTGLTALQVIYLTSNQIVSISSGA--FSGLSALTYV 112

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           ++ + N IT       + LT L  L +  + +T        GL  LT L+L G  +T+  
Sbjct: 113 SL-FNNLITSIPDSLFADLTALTYLGLHGNLITSMAATAFTGLNVLTRLSLYGNQITSIS 171

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
            ++ S L +L  L L   QL+    + F+ + +L  L L  NEIT         L  L  
Sbjct: 172 ANAFSNLPALTTLALYDNQLTSIPADAFTGLSALTELTLYDNEITSISANSFTSLPALII 231

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           L+LDS  I D      TGL  L  L LS  Q+ S      +GL+ L+S+ L    I+   
Sbjct: 232 LSLDSNRITDISANAFTGLTALNILYLSHNQLSSISANAFTGLSGLDSLTLFNNEITSIH 291

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLR 302
           +    GL +L SL L +  IT       T+LT L  L L   +IT   A A+  +   L 
Sbjct: 292 VDAFTGLPALTSLYLQSNLITSIPPFVFTNLTALQILVLAYNQITGIPANAFTADLAALN 351

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            L++    +T         L SL+ L L  N  +T        GLT L  L +S++  T+
Sbjct: 352 YLDVSENQVTSIPANAFAGLHSLSSLFLQGN-QITSILTSTFQGLTALTHLILSDNPFTT 410

Query: 363 AGLRHLKPLKN 373
                 K L N
Sbjct: 411 LPPGLFKGLPN 421



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 7/240 (2%)

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNLK 206
            F+ + +L+V+ L  N+I         GL+ L  ++L +     I D    +LT L  L 
Sbjct: 78  AFTGLTALQVIYLTSNQIVSISSGAFSGLSALTYVSLFNNLITSIPDSLFADLTALTYLG 137

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
              L    + S      +GL  L  ++L    I+  S    + L +L +L L   Q+T  
Sbjct: 138 ---LHGNLITSMAATAFTGLNVLTRLSLYGNQITSISANAFSNLPALTTLALYDNQLTSI 194

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
              A T L+ LT L L+   IT   A    +   L  L +    +TD        L++L 
Sbjct: 195 PADAFTGLSALTELTLYDNEITSISANSFTSLPALIILSLDSNRITDISANAFTGLTALN 254

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
           +L LS N  L+  +    +GL+GL SL + N+ ITS  +     L  L SL L+S  +T+
Sbjct: 255 ILYLSHN-QLSSISANAFTGLSGLDSLTLFNNEITSIHVDAFTGLPALTSLYLQSNLITS 313



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 104/268 (38%), Gaps = 37/268 (13%)

Query: 161 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
           N GF  I     V      N   L L S  I +      TGL  L+ + L+  Q+ S   
Sbjct: 47  NKGFTAIPSGIPV------NTTQLYLQSNLITNIPASAFTGLTALQVIYLTSNQIVSISS 100

Query: 221 RHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
              SGL+ L  ++L     T I D      A L++L  L L    IT     A T L  L
Sbjct: 101 GAFSGLSALTYVSLFNNLITSIPDS---LFADLTALTYLGLHGNLITSMAATAFTGLNVL 157

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN---- 333
           T L L+G +IT   A    N   L +L +    LT         LS+LT L L  N    
Sbjct: 158 TRLSLYGNQITSISANAFSNLPALTTLALYDNQLTSIPADAFTGLSALTELTLYDNEITS 217

Query: 334 -------------------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
                                +TD +    +GLT L  L +S+++++S        L  L
Sbjct: 218 ISANSFTSLPALIILSLDSNRITDISANAFTGLTALNILYLSHNQLSSISANAFTGLSGL 277

Query: 375 RSLTLESCKVTANDIKRLQSRDLPNLVS 402
            SLTL + ++T+  +       LP L S
Sbjct: 278 DSLTLFNNEITSIHVDAFTG--LPALTS 303



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 3/172 (1%)

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           YL  N  Q++      F+ + +L +L +  N+IT        GLT +  LNL    +   
Sbjct: 543 YLQAN--QITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASI 600

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
               + GL  LK L+LS+ ++        +GLT L  + L+   I+  S      L +L 
Sbjct: 601 PASAIAGLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALA 660

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
            + L A  IT     A   +T LT+LDL   RIT   A    +   L +L +
Sbjct: 661 FVWLRANWITAISANAFAGVT-LTYLDLQNNRITSIPANAFTSLTALNTLTL 711



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 3/176 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            +GLS LT L    NN IT+    AF GL  + +L+L+           + GL  L+ L+
Sbjct: 557 FAGLSALTIL-IMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIAGLTALKFLD 615

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N ITD      +GLT L  L ++ +++T         L  L  + L    +TA   
Sbjct: 616 LS-NNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRANWITAISA 674

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
           ++ + + +L YL+L   +++      F+ + +L  L L  N  T       KGL N
Sbjct: 675 NAFAGV-TLTYLDLQNNRITSIPANAFTSLTALNTLTLNDNPFTTLPPGLFKGLPN 729



 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 159/402 (39%), Gaps = 41/402 (10%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKL 60
           +  +GL  LTSL + ++N IT+     F  L  L  L L    +I G   N     L  L
Sbjct: 293 DAFTGLPALTSL-YLQSNLITSIPPFVFTNLTALQILVLAY-NQITGIPANAFTADLAAL 350

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             L++   N +T       +GL +L SL +  +++T    +  +GL  LT L L   P T
Sbjct: 351 NYLDVSE-NQVTSIPANAFAGLHSLSSLFLQGNQITSILTSTFQGLTALTHLILSDNPFT 409

Query: 121 AACLDSLSALG--------SLFYLNLNRCQLSDDGCEKFSKIGSLK-------VLNLGFN 165
                    L         +L Y++ N     ++     S  GS         V    + 
Sbjct: 410 TLPPGLFKGLPNGLILSPPTLLYMSPNNFTFGENTVAPPSTYGSASEPYQCDTVCGTCYA 469

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLS 224
             +D C      +    S+    C    EG + ++G C +  C        G+ GL   S
Sbjct: 470 AGSDACCPSNCLICTSSSV----CTQCSEGAMMVSGSCVSHAC--------GAGGLCTCS 517

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
           G T ++  N S T I        A  S+  ++ L A QIT    +A   L+ LT L +F 
Sbjct: 518 G-TTVDCQNRSLTVIPS------AMPSNTLTVYLQANQITSIPASAFAGLSALTILIMFN 570

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
            +IT            +  L +    L       I  L++L  L+LS N  +TD +    
Sbjct: 571 NKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIAGLTALKFLDLSNN-KITDISSSEF 629

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
           +GLT L  L ++++RITS        L  L  + L +  +TA
Sbjct: 630 TGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRANWITA 671



 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 5/167 (2%)

Query: 213 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 272
           T + +S    LS LT L   N   T I   +     GL+++  LNL    +     +A+ 
Sbjct: 550 TSIPASAFAGLSALTILIMFNNKITSIDTDAFT---GLTAMSQLNLQDNNLASIPASAIA 606

Query: 273 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
            LT L  LDL   +ITD  ++       L  L +    +T         L +L  + L  
Sbjct: 607 GLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRA 666

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           N  +T  +    +G+T L  L++ N+RITS        L  L +LTL
Sbjct: 667 NW-ITAISANAFAGVT-LTYLDLQNNRITSIPANAFTSLTALNTLTL 711



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 2/175 (1%)

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
             GL  L  L + + ++ S      +GLT +  +NL    ++      +AGL++LK L+L
Sbjct: 557 FAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIAGLTALKFLDL 616

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
              +ITD   +  T LT L +L L   RIT   A    +   L  + +    +T      
Sbjct: 617 SNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRANWITAISANA 676

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 373
              + +LT L+L QN  +T       + LT L +L ++++  T+      K L N
Sbjct: 677 FAGV-TLTYLDL-QNNRITSIPANAFTSLTALNTLTLNDNPFTTLPPGLFKGLPN 729



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 2/198 (1%)

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           N+IT        GL+ L  L + +  I        TGL  +  L L D  + S     ++
Sbjct: 547 NQITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIA 606

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
           GLT L+ ++LS   I+D S  +  GL++L  L L++ +IT     A TSL  L  + L  
Sbjct: 607 GLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRA 666

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             IT   A        L  L++    +T         L++L  L L+ N   T     L 
Sbjct: 667 NWITAISANAFAGV-TLTYLDLQNNRITSIPANAFTSLTALNTLTLNDN-PFTTLPPGLF 724

Query: 345 SGLTGLVSLNVSNSRITS 362
            GL   + L+V+ S+  S
Sbjct: 725 KGLPNGMVLSVAFSQYLS 742



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 25/205 (12%)

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           P +  +N  ++ +  +++T    +   GL  LT+L +    +T+   D+ + L ++  LN
Sbjct: 532 PSAMPSNTLTVYLQANQITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLN 591

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           L    L+       + + +LK L+L  N+ITD       GLT L  L L+S         
Sbjct: 592 LQDNNLASIPASAIAGLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNS--------- 642

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
                           ++ S      + L  L  + L    I+  S    AG+ +L  L+
Sbjct: 643 ---------------NRITSISANAFTSLPALAFVWLRANWITAISANAFAGV-TLTYLD 686

Query: 258 LDARQITDTGLAALTSLTGLTHLDL 282
           L   +IT     A TSLT L  L L
Sbjct: 687 LQNNRITSIPANAFTSLTALNTLTL 711


>gi|242083750|ref|XP_002442300.1| hypothetical protein SORBIDRAFT_08g017670 [Sorghum bicolor]
 gi|241942993|gb|EES16138.1| hypothetical protein SORBIDRAFT_08g017670 [Sorghum bicolor]
          Length = 489

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 121/408 (29%), Positives = 193/408 (47%), Gaps = 36/408 (8%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 65
           G   L  LS +    I+  G+   A     L  L++      +G L ++  L +LE L +
Sbjct: 9   GCPRLEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLRSISSLERLEELAM 68

Query: 66  KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC--PVT 120
             C+CI D  ++ LS G  +L+S+ +S C  VT  G+A L  G   +  L    C   + 
Sbjct: 69  VCCSCIDDEGLELLSKGSDSLQSVDVSRCDHVTSEGLASLIDGRNFVQKLYAADCLHEIG 128

Query: 121 AACLDSLSALG-SLFYLNLNRCQLSD-------DGCEKFSKIGSLK---VLNLGFNEITD 169
              L  L+ L  +L  L L+  ++SD       + C K  +IG  K   V + G + +  
Sbjct: 129 QRFLSKLATLKETLTMLKLDGLEVSDSLLQAIGESCNKLVEIGLSKCSGVTDDGISSLVA 188

Query: 170 ECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKCLEL-SDTQVGSSGLRHLSG- 225
           +C       ++L +++L  C  I +  L ++   C  L+CL L S + +   GL+ ++  
Sbjct: 189 QC-------SDLRTIDLTCCNLITNNALDSIADNCKMLECLRLESCSLINEKGLKRIATC 241

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LTHLDLF 283
             NL+ I+L+  G+ D +L  LA  S L+ L L     I+D G+A ++S  G L  LDL+
Sbjct: 242 CPNLKEIDLTDCGVDDAALEHLAKCSELRILKLGLCSSISDKGIAFISSNCGKLVELDLY 301

Query: 284 GAR-ITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
               ITD G A L N  K ++ L +C    +TD G+ H+  L  LT L L     +T   
Sbjct: 302 RCNSITDDGLAALVNGCKRIKLLNLCYCNKITDTGLGHLGSLEELTNLELRCLVRITGIG 361

Query: 341 LELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 385
           +  ++ G   L+ L++     +  AGL  L     NLR LT+  C+VT
Sbjct: 362 ISSVAIGCKSLIELDLKRCYSVDDAGLWALARYALNLRQLTISYCQVT 409



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 13/152 (8%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAF--AGLINLVKLDLERCTRIH----GGLVNLKG 56
           E+L+  S L  L     ++I+ +G+ AF  +    LV+LDL RC  I       LVN  G
Sbjct: 261 EHLAKCSELRILKLGLCSSISDKGI-AFISSNCGKLVELDLYRCNSITDDGLAALVN--G 317

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNL 114
             +++ LN+ +CN ITD+ +  L  L  L +L++ C  ++T  GI+ +  G + L  L+L
Sbjct: 318 CKRIKLLNLCYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKSLIELDL 377

Query: 115 EGC-PVTAACLDSLSALG-SLFYLNLNRCQLS 144
           + C  V  A L +L+    +L  L ++ CQ++
Sbjct: 378 KRCYSVDDAGLWALARYALNLRQLTISYCQVT 409



 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 119/288 (41%), Gaps = 39/288 (13%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 69
           L  L     + I  +G+K  A    NL ++DL  C      L +L    +L  L +  C+
Sbjct: 219 LECLRLESCSLINEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRILKLGLCS 278

Query: 70  CITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLD 125
            I+D  +  +S     L  L +  C+ +TD G+A L  G +++ LLNL  C  +T   L 
Sbjct: 279 SISDKGIAFISSNCGKLVELDLYRCNSITDDGLAALVNGCKRIKLLNLCYCNKITDTGLG 338

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
            L +L  L  L L RC               +++  +G + +         G  +L  L+
Sbjct: 339 HLGSLEELTNLEL-RCL--------------VRITGIGISSVA-------IGCKSLIELD 376

Query: 186 LDSC-GIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRH----LSGLTNLESINLSFTGI 239
           L  C  + D GL  L     NL+ L +S  QV   GL H    L  L +++ ++LS+  I
Sbjct: 377 LKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHLLSSLRCLQDIKMVHLSWVSI 436

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
               +   A    LK L +        GL  + S   L  L   G RI
Sbjct: 437 EGFEMALRAACGRLKKLKMLC------GLKTVLSPELLQMLQACGCRI 478


>gi|15896519|ref|NP_349868.1| ChW repeat-containing protein [Clostridium acetobutylicum ATCC 824]
 gi|337738478|ref|YP_004637925.1| ChW repeat-containing protein [Clostridium acetobutylicum DSM 1731]
 gi|384459988|ref|YP_005672408.1| putative surface protein, responsible for cell interaction;
           contains cell adhesion domain and ChW-repeats
           [Clostridium acetobutylicum EA 2018]
 gi|15026350|gb|AAK81208.1|AE007823_2 Possible surface protein, responsible for cell interaction;
           contains cell adhesion domain and ChW-repeats
           [Clostridium acetobutylicum ATCC 824]
 gi|325510677|gb|ADZ22313.1| putative surface protein, responsible for cell interaction;
           contains cell adhesion domain and ChW-repeats
           [Clostridium acetobutylicum EA 2018]
 gi|336291611|gb|AEI32745.1| ChW repeat-containing protein [Clostridium acetobutylicum DSM 1731]
          Length = 874

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 173/357 (48%), Gaps = 58/357 (16%)

Query: 48  HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 107
           +G + +L  + KL +L I   N  TD D+ P+  LTNL  L I  SK+++  +       
Sbjct: 540 YGNVTDLTPISKLSNLKILSLNGDTDIDISPIGNLTNLNQLDIGESKISNINVLNKLNNL 599

Query: 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNL---NRCQLSDDGCEKFSKIGSLKVLNLGF 164
              +L+          +   S LGSL  L L   + C  SD      +K+ +L  ++L +
Sbjct: 600 NYLILDKN------TSIKDFSPLGSLTNLTLLQASYCNFSD--LTPLAKMKNLSRVSLNY 651

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           N IT   +  LK  TNL  L L    I D     +T + N                    
Sbjct: 652 NNIT--SIEPLKSSTNLVDLVLSGNKISD-----ITPVAN-------------------- 684

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
            LTNLESI+LS+  +++  +  LA L+ LKSL LD      TG++ ++SL+GLT+L+  G
Sbjct: 685 -LTNLESISLSYNQVNN--ISSLAKLTKLKSLMLD-----HTGISDISSLSGLTNLNYLG 736

Query: 285 ARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
            +  +      L+N  NL +L+I    +++  V  I +L++LTLL+++ N       +  
Sbjct: 737 VQDNNIEDITSLKNLTNLANLKISQNKISN--VDAIGNLTNLTLLDMNNN---QISNINA 791

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           I   T L+SL++ +++++   +  L  L NL SL L +  +  ND+  L  +DL +L
Sbjct: 792 IKNSTKLISLSMHHNKVSD--ISALSKLTNLESLNLGNNPI--NDVTPL--KDLSHL 842



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 24/225 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KL----------DLERCTRIHGG 50
           L+ + NL+ +S   NN  + + +K+   L++LV    K+          +LE  +  +  
Sbjct: 638 LAKMKNLSRVSLNYNNITSIEPLKSSTNLVDLVLSGNKISDITPVANLTNLESISLSYNQ 697

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           + N+  L KL  L     +    SD+  LSGLTNL  L +  + + D  I  LK L  L 
Sbjct: 698 VNNISSLAKLTKLKSLMLDHTGISDISSLSGLTNLNYLGVQDNNIED--ITSLKNLTNLA 755

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
            L +    +  + +D++  L +L  L++N  Q+S+    K S    L  L++  N+++D 
Sbjct: 756 NLKISQNKI--SNVDAIGNLTNLTLLDMNNNQISNINAIKNST--KLISLSMHHNKVSD- 810

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
            +  L  LTNLESLNL +  I D  +  L  L +L  ++L+ +Q 
Sbjct: 811 -ISALSKLTNLESLNLGNNPIND--VTPLKDLSHLYEVDLTTSQA 852


>gi|158298684|ref|XP_318863.4| AGAP009775-PA [Anopheles gambiae str. PEST]
 gi|157014003|gb|EAA14468.4| AGAP009775-PA [Anopheles gambiae str. PEST]
          Length = 547

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 150/337 (44%), Gaps = 46/337 (13%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH----GGLVNLKGLMKLES 62
           GL  L ++   RNN IT   M+ F G  NL++LDL R  R+     G   +LK L  L  
Sbjct: 110 GLVRLKTIDLSRNN-ITQLAMENFRGQDNLIELDLSR-NRLDNIASGTFAHLKELKTLHL 167

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           ++    N IT+ + +    L  LK L +S + + D      K +Q L +L + GC ++  
Sbjct: 168 ID----NSITEFNQRLFLHLAKLKHLDLSYNSIDDLPPEVFKDVQDLKILRVRGCRLSNI 223

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLT 179
                + L  L  L+L + Q+     E+F  +  L+ L L  N+   I DE  +H KGLT
Sbjct: 224 NPQIYNILSHLTELDLGQNQIKFLDKEEFKDLRHLQTLRLDGNQLSVIIDELFIHQKGLT 283

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            L+        I D    N   L NL  L+ S  ++          L NL+++N+S    
Sbjct: 284 LLDISRNRLAKIADRAFEN---LANLTFLDASYNKLSHIEPVCFRPLRNLQTLNIS---- 336

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR--- 296
                          ++ LD  ++ DT +  + ++TGL         + D G   L    
Sbjct: 337 --------------GNIQLDLGEMEDT-INVIKNITGLM--------VADMGTLPLNLFS 373

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            F++L +L + G  + +  ++ I+ L+ L  L+LS+N
Sbjct: 374 PFRHLSALNLSGNHIDNFTLQIIEPLNQLEFLDLSRN 410



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 132/324 (40%), Gaps = 23/324 (7%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
                 L+ L+I  + V   G     GL +L  ++L    +T   +++     +L  L+L
Sbjct: 84  FQYFKKLEILRIIDANVPSVGDRSFWGLVRLKTIDLSRNNITQLAMENFRGQDNLIELDL 143

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           +R +L +     F+ +  LK L+L  N IT+        L  L+ L+L    I D     
Sbjct: 144 SRNRLDNIASGTFAHLKELKTLHLIDNSITEFNQRLFLHLAKLKHLDLSYNSIDDLPPEV 203

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
              + +LK L +   ++ +   +  + L++L  ++L    I      +   L  L++L L
Sbjct: 204 FKDVQDLKILRVRGCRLSNINPQIYNILSHLTELDLGQNQIKFLDKEEFKDLRHLQTLRL 263

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
           D  Q++           GLT LD+   R+         N  NL  L+     L+      
Sbjct: 264 DGNQLSVIIDELFIHQKGLTLLDISRNRLAKIADRAFENLANLTFLDASYNKLSHIEPVC 323

Query: 319 IKDLSSLTLLNLSQNCNL----TDKTLELISGLTGLV-------------------SLNV 355
            + L +L  LN+S N  L     + T+ +I  +TGL+                   +LN+
Sbjct: 324 FRPLRNLQTLNISGNIQLDLGEMEDTINVIKNITGLMVADMGTLPLNLFSPFRHLSALNL 383

Query: 356 SNSRITSAGLRHLKPLKNLRSLTL 379
           S + I +  L+ ++PL  L  L L
Sbjct: 384 SGNHIDNFTLQIIEPLNQLEFLDL 407


>gi|320163290|gb|EFW40189.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 830

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 159/384 (41%), Gaps = 9/384 (2%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLMKLE 61
            +GL  LT L+ RRN  ++A    AF GL  L +L+L   E  T       +L  L  L 
Sbjct: 56  FAGLVALTELNLRRN-PLSAVPTSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSL- 113

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           SL       I ++    L  LTNL   +   + + ++  A   GL  LT L L    + +
Sbjct: 114 SLTDNQLTTIPENAFAGLGALTNLDLTENQLTTIPENAFA---GLGALTNLQLPSNKIVS 170

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
               S + L  L  L +N   ++         + +L+VL+L +N IT        GL +L
Sbjct: 171 MAAISFTGLAGLTTLIMNNNLVTTIPENALPGLAALEVLDLRYNSITSVSGNAFAGLLSL 230

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            SL++ +        + L  L  L  L L +  + S      SGL+ L  ++L++  ++ 
Sbjct: 231 RSLDISANAFAGLTALTLFNLTALHTLTLENNLLTSISANAFSGLSALTWLHLAYNRLTS 290

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
            S    +GLS+L SL L+    T     A   LT L  L L   ++T   A        L
Sbjct: 291 ISANAFSGLSALSSLYLNNNPCTAIAAEAFNGLTSLKSLTLVANQLTSISANAFVGLNAL 350

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
             L +    +          L  L  L++  N  +T       +GLT LV L +  ++IT
Sbjct: 351 TYLYLQNNRIVSFSADAFTGLPVLIYLDIYSNP-ITSIPSNAFTGLTKLVFLRLDTNQIT 409

Query: 362 SAGLRHLKPLKNLRSLTLESCKVT 385
           S        L  LR L L S ++T
Sbjct: 410 SISANAFTELSALRGLWLHSNRIT 433



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 152/365 (41%), Gaps = 74/365 (20%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           IT+    AFAGL+ L +L+L R                         N ++       +G
Sbjct: 48  ITSVSPNAFAGLVALTELNLRR-------------------------NPLSAVPTSAFTG 82

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           LT L+ L +  +++T                      ++A     L AL S   L+L   
Sbjct: 83  LTALQRLNLDHNEITT---------------------LSANAFPHLPALTS---LSLTDN 118

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           QL+      F+ +G+L  L+L  N++T        GL  L +L L S  I     ++ TG
Sbjct: 119 QLTTIPENAFAGLGALTNLDLTENQLTTIPENAFAGLGALTNLQLPSNKIVSMAAISFTG 178

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           L  L  L +++  V +     L GL  LE ++L +  I+  S    AGL SL+SL++ A 
Sbjct: 179 LAGLTTLIMNNNLVTTIPENALPGLAALEVLDLRYNSITSVSGNAFAGLLSLRSLDISAN 238

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
                      +  GLT L LF             N   L +L +    LT         
Sbjct: 239 -----------AFAGLTALTLF-------------NLTALHTLTLENNLLTSISANAFSG 274

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           LS+LT L+L+ N  LT  +    SGL+ L SL ++N+  T+        L +L+SLTL +
Sbjct: 275 LSALTWLHLAYN-RLTSISANAFSGLSALSSLYLNNNPCTAIAAEAFNGLTSLKSLTLVA 333

Query: 382 CKVTA 386
            ++T+
Sbjct: 334 NQLTS 338



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 142/344 (41%), Gaps = 23/344 (6%)

Query: 1   MTEN-LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGL 57
           + EN  +GL  LT+L    N  I +    +F GL  L  L +     T I      L GL
Sbjct: 147 IPENAFAGLGALTNLQLPSNK-IVSMAAISFTGLAGLTTLIMNNNLVTTIPENA--LPGL 203

Query: 58  MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL--- 114
             LE L++++ N IT       +GL +L+SL IS +           GL  LTL NL   
Sbjct: 204 AALEVLDLRY-NSITSVSGNAFAGLLSLRSLDISANA--------FAGLTALTLFNLTAL 254

Query: 115 -----EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
                E   +T+   ++ S L +L +L+L   +L+      FS + +L  L L  N  T 
Sbjct: 255 HTLTLENNLLTSISANAFSGLSALTWLHLAYNRLTSISANAFSGLSALSSLYLNNNPCTA 314

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
                  GLT+L+SL L +  +         GL  L  L L + ++ S      +GL  L
Sbjct: 315 IAAEAFNGLTSLKSLTLVANQLTSISANAFVGLNALTYLYLQNNRIVSFSADAFTGLPVL 374

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             +++    I+        GL+ L  L LD  QIT     A T L+ L  L L   RIT 
Sbjct: 375 IYLDIYSNPITSIPSNAFTGLTKLVFLRLDTNQITSISANAFTELSALRGLWLHSNRITT 434

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
             A        L +L +    LT       K L +   L+ S N
Sbjct: 435 LSANAFIGLTALTNLPLNDNPLTTTPPGLFKGLPNSLFLSYSSN 478



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 99/245 (40%), Gaps = 6/245 (2%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
            +L F +IT         LT LESL+L S  I         GL  L  L L    + +  
Sbjct: 17  FDLYFTDITSIPAGTFANLTALESLSLVSGQITSVSPNAFAGLVALTELNLRRNPLSAVP 76

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
               +GLT L+ +NL    I+  S      L +L SL+L   Q+T     A   L  LT+
Sbjct: 77  TSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSLSLTDNQLTTIPENAFAGLGALTN 136

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           LDL   ++T            L +L++    +          L+ LT L ++ N  +T  
Sbjct: 137 LDLTENQLTTIPENAFAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNNNL-VTTI 195

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
               + GL  L  L++  + ITS        L +LRSL      ++AN    L +  L N
Sbjct: 196 PENALPGLAALEVLDLRYNSITSVSGNAFAGLLSLRSL-----DISANAFAGLTALTLFN 250

Query: 400 LVSFR 404
           L +  
Sbjct: 251 LTALH 255



 Score = 45.1 bits (105), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 1/182 (0%)

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           N    +L  T + S      + LT LES++L    I+  S    AGL +L  LNL    +
Sbjct: 13  NTTQFDLYFTDITSIPAGTFANLTALESLSLVSGQITSVSPNAFAGLVALTELNLRRNPL 72

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
           +    +A T LT L  L+L    IT   A    +   L SL +    LT         L 
Sbjct: 73  SAVPTSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSLSLTDNQLTTIPENAFAGLG 132

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           +LT L+L++N  LT       +GL  L +L + +++I S        L  L +L + +  
Sbjct: 133 ALTNLDLTEN-QLTTIPENAFAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNNNL 191

Query: 384 VT 385
           VT
Sbjct: 192 VT 193


>gi|290994554|ref|XP_002679897.1| leucine rich repeat domain protein [Naegleria gruberi]
 gi|284093515|gb|EFC47153.1| leucine rich repeat domain protein [Naegleria gruberi]
          Length = 331

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 142/297 (47%), Gaps = 10/297 (3%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ----ISCS 93
           K  L +C+ I    +N+  + +   L+I++ N ITDS    +     L+S      IS  
Sbjct: 37  KFILYKCSLISKQFLNV--INERAKLSIEFKN-ITDSKFNAVRKSQFLESFTSLKFISVE 93

Query: 94  KVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 152
           +V D     L GL + LT L + G  +       +S    L  L ++  Q+  +G +  S
Sbjct: 94  EVFDIKYLELVGLMRNLTKLCVGGNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLIS 153

Query: 153 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 212
            +  L  L++  N +  E    + G+ +L  LN+ S  I  EG+ +++ + NL  L++  
Sbjct: 154 GMTKLTELDISANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEMKNLTKLDICG 213

Query: 213 TQVGSSGLRHLSGLTNLESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
             +G+ G + +S +  L  +      + S+G++  ++ L  L +LN+   +I D G  A+
Sbjct: 214 NNLGAEGAKSISQMKQLTYLKAYTNSLRSEGAIF-ISELDKLTTLNICYNEIGDEGAKAI 272

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
           + +  LT L + G RI   GA  +   K LR L+I    + + GVK++K +  LT L
Sbjct: 273 SQMPNLTDLRIDGNRIGPEGAKSISEMKQLRLLDISFNRIGEEGVKYVKGMKHLTRL 329



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 114/239 (47%), Gaps = 4/239 (1%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
           SLK +++   E+ D   + L GL  NL  L +    IG +G   ++    L  L +  +Q
Sbjct: 86  SLKFISV--EEVFDIKYLELVGLMRNLTKLCVGGNEIGLQGAKIVSEFKQLTSLYIDSSQ 143

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           +G+ G + +SG+T L  +++S   +     + ++G+  L  LN+ +  I   G+ +++ +
Sbjct: 144 IGTEGAKLISGMTKLTELDISANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEM 203

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
             LT LD+ G  +   GA  +   K L  L+     L   G   I +L  LT LN+  N 
Sbjct: 204 KNLTKLDICGNNLGAEGAKSISQMKQLTYLKAYTNSLRSEGAIFISELDKLTTLNICYN- 262

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
            + D+  + IS +  L  L +  +RI   G + +  +K LR L +   ++    +K ++
Sbjct: 263 EIGDEGAKAISQMPNLTDLRIDGNRIGPEGAKSISEMKQLRLLDISFNRIGEEGVKYVK 321



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 110/216 (50%), Gaps = 1/216 (0%)

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
           +G NEI  +    +     L SL +DS  IG EG   ++G+  L  L++S   + + G +
Sbjct: 115 VGGNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDISANYLCAEGAK 174

Query: 222 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
            +SG+ +L  +N+S + I    ++ ++ + +L  L++    +   G  +++ +  LT+L 
Sbjct: 175 SISGMDHLTFLNISSSNIDQEGIKSISEMKNLTKLDICGNNLGAEGAKSISQMKQLTYLK 234

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
            +   +   GA ++     L +L IC   + D G K I  + +LT L +  N  +  +  
Sbjct: 235 AYTNSLRSEGAIFISELDKLTTLNICYNEIGDEGAKAISQMPNLTDLRIDGN-RIGPEGA 293

Query: 342 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
           + IS +  L  L++S +RI   G++++K +K+L  L
Sbjct: 294 KSISEMKQLRLLDISFNRIGEEGVKYVKGMKHLTRL 329



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 26/225 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S    LTSL +  ++ I  +G K  +G+  L +LD+                       
Sbjct: 128 VSEFKQLTSL-YIDSSQIGTEGAKLISGMTKLTELDIS---------------------- 164

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +     K +SG+ +L  L IS S +   GI  +  ++ LT L++ G  + A   
Sbjct: 165 ---ANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEMKNLTKLDICGNNLGAEGA 221

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            S+S +  L YL      L  +G    S++  L  LN+ +NEI DE    +  + NL  L
Sbjct: 222 KSISQMKQLTYLKAYTNSLRSEGAIFISELDKLTTLNICYNEIGDEGAKAISQMPNLTDL 281

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
            +D   IG EG  +++ +  L+ L++S  ++G  G++++ G+ +L
Sbjct: 282 RIDGNRIGPEGAKSISEMKQLRLLDISFNRIGEEGVKYVKGMKHL 326


>gi|343414369|emb|CCD21014.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
          Length = 469

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 121/383 (31%), Positives = 190/383 (49%), Gaps = 64/383 (16%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
             LS LS+L +L       IT   +   + L N V+LDL  CT    G+ ++  L  L S
Sbjct: 60  PPLSKLSSLRTLDISHCTGIT--DVSPLSKLNNFVQLDLSHCT----GITDVSPLSVLSS 113

Query: 63  LNI-KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           L +  + +C   +D+ PLS L++L++L +S          Y  G++ ++           
Sbjct: 114 LRMLFFSHCTGITDVSPLSVLSSLRTLDLS----------YCTGIKHVS----------- 152

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 180
                LS L SL  L+L+ C  +       SK+ SL  L+L +   I  E    L  L++
Sbjct: 153 ----PLSKLSSLEKLDLSHCT-AIKHVSPLSKLSSLCTLDLSYCTGIKHE--SPLSKLSS 205

Query: 181 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TG 238
           L +L+L  C GI D  +  L+ L +L+ L+LS    G + +  LS L++L +++LS  TG
Sbjct: 206 LRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCT-GITDVSPLSELSSLRTLDLSHCTG 262

Query: 239 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLR 296
           I+D S   L+ LSSL++L+L     ITD  ++ L+ L+ L  LDL     ITD   + L 
Sbjct: 263 ITDVS--PLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLS 316

Query: 297 NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
              +LR L +    G+TD  V  + +LSSL +L+LS    +TD     +S L+ L SL++
Sbjct: 317 ELSSLRMLYLSHCTGITD--VSPLSELSSLRMLDLSHCTGITD-----VSPLSELSSLHI 369

Query: 356 SNSRITSAGLRHLKPLKNLRSLT 378
                   GL H   + ++  LT
Sbjct: 370 -------LGLSHCTGITDVSPLT 385


>gi|219821342|gb|ACL37806.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  LTGL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLTGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 189/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ LT LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLTGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 341 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 376


>gi|290979200|ref|XP_002672322.1| predicted protein [Naegleria gruberi]
 gi|284085898|gb|EFC39578.1| predicted protein [Naegleria gruberi]
          Length = 318

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 111/231 (48%), Gaps = 4/231 (1%)

Query: 157 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
           ++ LNL  +EIT   +     L NL+ L+L S  I  EG   L+ L NL  L L+D  + 
Sbjct: 1   MESLNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSIT 60

Query: 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276
             GLR+ S LTNL  + L    I       L+  +++K L L    I D GL    +L  
Sbjct: 61  GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKS 120

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQNCN 335
           L HL+L    +   G  YL   K L+ L+I    LTD  +    D   S+  L+LS+N  
Sbjct: 121 LIHLNLNFNNV-QRGLIYLSECKLLKQLDIQHNNLTDQELIDFFDKELSIEELDLSENKK 179

Query: 336 LTDKTLELISGLTGLVSLNV-SNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           L+ K+ + I     L  LN+ SN ++    L HL  L NL +L   +C +T
Sbjct: 180 LSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLASL-NLLTLRANNCGIT 229



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 112/238 (47%), Gaps = 16/238 (6%)

Query: 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
           LNL    +T++ +     L +L  L+L+   ++ +G    S + +L  L L  N IT E 
Sbjct: 4   LNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSITGEG 63

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
           L +   LTNL  L LD+  IG  G   L+   N+K L LS+  +   GL +   L +L  
Sbjct: 64  LRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKSLIH 123

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGARITDS 290
           +NL+F  +  G L  L+    LK L++    +TD  L         +  LDL     +++
Sbjct: 124 LNLNFNNVQRG-LIYLSECKLLKQLDIQHNNLTDQELIDFFDKELSIEELDL-----SEN 177

Query: 291 GAAYLRNFKNL---RSLEICGGG----LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
                ++FKN+   R L I   G    L D  + H+  L+ LTL   + NC +TDK L
Sbjct: 178 KKLSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLASLNLLTL--RANNCGITDKGL 233



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 8/200 (4%)

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           ++ L LS++++ SSG+     L NL+ ++LS   I+      L+ L +L SL L+   IT
Sbjct: 1   MESLNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSIT 60

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 324
             GL   ++LT LT L L    I   GA YL +  N++ L +    + D G+++  +L S
Sbjct: 61  GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKS 120

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           L  LNL  N N   + L  +S    L  L++ ++ +T   L         + L++E   +
Sbjct: 121 LIHLNL--NFNNVQRGLIYLSECKLLKQLDIQHNNLTDQELIDFFD----KELSIEELDL 174

Query: 385 TANDIKRLQSRDLPNLVSFR 404
           + N  K+L  +   N+   R
Sbjct: 175 SEN--KKLSGKSFKNICKQR 192



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 104/235 (44%), Gaps = 6/235 (2%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           +ESLN+     IT S +     L NL+ L +S + +   G  YL  L  LT L L    +
Sbjct: 1   MESLNLSNSE-ITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSI 59

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
           T   L + S L +L  L L+   +   G    S   ++K L L  N I DE L +   L 
Sbjct: 60  TGEGLRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLK 119

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFT- 237
           +L  LNL+   +   GL+ L+    LK L++    +    L        ++E ++LS   
Sbjct: 120 SLIHLNLNFNNV-QRGLIYLSECKLLKQLDIQHNNLTDQELIDFFDKELSIEELDLSENK 178

Query: 238 GISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSG 291
            +S  S + +     L  LN+ +  ++ D  L+ L SL  LT L      ITD G
Sbjct: 179 KLSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLASLNLLT-LRANNCGITDKG 232


>gi|290997409|ref|XP_002681274.1| predicted protein [Naegleria gruberi]
 gi|284094897|gb|EFC48530.1| predicted protein [Naegleria gruberi]
          Length = 237

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 114/229 (49%), Gaps = 1/229 (0%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L  +T L +L+I  + + D+ +  +  +++LT L+LE   +      S+S L +L YLN+
Sbjct: 2   LGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNI 61

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
               ++D+G E   ++ +L  L +    IT +    +  L NL  LN+    IGDEG   
Sbjct: 62  GNNPINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKF 121

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLN 257
           ++ + +LK L++S   +   G + +S L  L  + +S   GI D   R ++ +  L  L 
Sbjct: 122 ISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELY 181

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           +    I + G  +++ +  LTHLD+    I   G   +R+ K+L  L I
Sbjct: 182 IQDCFIGNAGAISISRMDKLTHLDISENEIQIEGETVIRDMKHLSYLSI 230



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 104/207 (50%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +T L +L + +  I D  +  ++ +  L CL+L   Q+ + G + +S L NL  +N+   
Sbjct: 5   MTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNIGNN 64

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I+D  +  +  L +L  L + + +IT      ++ L  LT L++    I D GA ++  
Sbjct: 65  PINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKFISE 124

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
            K+L+ L+I   G++  G K I +L  LT+L +SQN  + D+   +IS +  L  L + +
Sbjct: 125 IKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELYIQD 184

Query: 358 SRITSAGLRHLKPLKNLRSLTLESCKV 384
             I +AG   +  +  L  L +   ++
Sbjct: 185 CFIGNAGAISISRMDKLTHLDISENEI 211



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 114/256 (44%), Gaps = 36/256 (14%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L  ++ LT+L    NN I    +K  + +  L  LDLE                      
Sbjct: 2   LGRMTQLTTLEIG-NNLIDDNMVKLISEMKQLTCLDLE---------------------- 38

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N I +   K +S L NL  L I  + + D GI  +  L  LT L +    +T+   
Sbjct: 39  ---INQIFNEGAKSISELRNLTYLNIGNNPINDEGIESICQLDNLTDLTVSSLRITSKSA 95

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             +S L +L +LN+    + D+G +  S+I SLK+L++  N I+    +  K ++ L+ L
Sbjct: 96  KFISKLNNLTFLNIAYNNIGDEGAKFISEIKSLKILDISLNGISP---IGAKSISELDQL 152

Query: 185 NL----DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
            +     + GIGDEG   ++ +  L  L + D  +G++G   +S +  L  +++S   I 
Sbjct: 153 TVLYISQNFGIGDEGARMISEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEIQ 212

Query: 241 ---DGSLRKLAGLSSL 253
              +  +R +  LS L
Sbjct: 213 IEGETVIRDMKHLSYL 228



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 1/157 (0%)

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           L  +T L ++ +    I D  ++ ++ +  L  L+L+  QI + G  +++ L  LT+L++
Sbjct: 2   LGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNI 61

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
               I D G   +    NL  L +    +T    K I  L++LT LN++ N N+ D+  +
Sbjct: 62  GNNPINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYN-NIGDEGAK 120

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
            IS +  L  L++S + I+  G + +  L  L  L +
Sbjct: 121 FISEIKSLKILDISLNGISPIGAKSISELDQLTVLYI 157


>gi|48096980|ref|XP_393659.1| PREDICTED: f-box/LRR-repeat protein 14 [Apis mellifera]
 gi|380017700|ref|XP_003692785.1| PREDICTED: F-box/LRR-repeat protein 14-like [Apis florea]
          Length = 481

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 160/323 (49%), Gaps = 42/323 (13%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           L G+ NL++L +S C  +TD+G+  A+ +    LT LNL  C   +       +LG +  
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDI-----SLGRIVQ 227

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 194
              N   L   GC   +  G   +L + +N            L  L+ L+L SC  + D 
Sbjct: 228 YLKNLEHLELGGCCNITNGG---LLCIAWN------------LKKLKRLDLRSCWQVSDL 272

Query: 195 GLVNLTGL--------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGS 243
           G+ +L G+          L+ L L D Q +    LRH+S GLT L+SINLSF   I+D  
Sbjct: 273 GIAHLAGVNREAAGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSG 332

Query: 244 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFK 299
           L+ LA +SSL+ LNL +   ++D G+A L    + ++ LD+ F  +I D    ++ +   
Sbjct: 333 LKHLAKMSSLRELNLRSCDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLF 392

Query: 300 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 357
           NL+ L +    ++D G+ K  K L  L  LN+ Q   LTDK L  I+  +  L  +++  
Sbjct: 393 NLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYG 452

Query: 358 -SRITSAGLRHLKPLKNLRSLTL 379
            +RI++ GL  +  L  L +L L
Sbjct: 453 CTRISTNGLERIMKLPQLSTLNL 475



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 116/221 (52%), Gaps = 32/221 (14%)

Query: 28  KAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNL 85
           +A  G + L  L L+ C R+    L ++  GL  L+S+N+ +C CITDS +K L+ +++L
Sbjct: 283 EAAGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSL 342

Query: 86  KSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRC 141
           + L + SC  V+D G+AYL +G  +++ L++  C      A +     L +L  L+L+ C
Sbjct: 343 RELNLRSCDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSAC 402

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 200
           Q+SD+G  K +K                        L +LE+LN+  C  + D+GL  + 
Sbjct: 403 QISDEGICKIAKT-----------------------LHDLETLNIGQCSRLTDKGLYTIA 439

Query: 201 -GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGI 239
             + +LKC++L   T++ ++GL  +  L  L ++NL    +
Sbjct: 440 ESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNLGLWHV 480



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 161/305 (52%), Gaps = 30/305 (9%)

Query: 54  LKGLMKLESLNIKWCNCITDSDM--KPLSGLTNLKSLQIS-CSKVTDSG----IAYLKGL 106
           LKG+  LE+LN+  C  ITD+ +        T L  L +S C +V+D      + YLK L
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDISLGRIVQYLKNL 232

Query: 107 QKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKI------GSLK 158
           + L L     C +T   L  ++  L  L  L+L  C Q+SD G    + +      G+L 
Sbjct: 233 EHLELGGC--CNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNLA 290

Query: 159 VLNLGFNE---ITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-SD 212
           + +L   +   ++DE L H+  GLT L+S+NL  C  I D GL +L  + +L+ L L S 
Sbjct: 291 LEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC 350

Query: 213 TQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGLA 269
             V   G+ +L+ G + + S+++SF   I D +L  ++ GL +LK L+L A QI+D G+ 
Sbjct: 351 DNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGIC 410

Query: 270 ALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSL 325
            +  +L  L  L++   +R+TD G   +  + K+L+ +++ G   ++  G++ I  L  L
Sbjct: 411 KIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQL 470

Query: 326 TLLNL 330
           + LNL
Sbjct: 471 STLNL 475



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 126/247 (51%), Gaps = 36/247 (14%)

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVN-----LTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           LKG+ NLE+LNL  C  I D GL+N      T L  L    C ++SD  +G    R +  
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDISLG----RIVQY 228

Query: 226 LTNLESINLS-FTGISDGSLRKLAG-LSSLKSLNLDA-RQITDTGLAALTSLT------- 275
           L NLE + L     I++G L  +A  L  LK L+L +  Q++D G+A L  +        
Sbjct: 229 LKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGN 288

Query: 276 -GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLL 328
             L HL L    R++D    ++      L+S+     +C   +TD+G+KH+  +SSL  L
Sbjct: 289 LALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLREL 345

Query: 329 NLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 385
           NL    N++D  +  L  G + + SL+VS   +I    L H+ + L NL+ L+L +C+++
Sbjct: 346 NLRSCDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQIS 405

Query: 386 ANDIKRL 392
              I ++
Sbjct: 406 DEGICKI 412



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 7/168 (4%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLN 64
           GL+ L S++      IT  G+K  A + +L +L+L  C  +   G+  L +G  ++ SL+
Sbjct: 313 GLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNVSDIGMAYLAEGGSRISSLD 372

Query: 65  IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTA 121
           + +C+ I D  +  +S GL NLK L +S  +++D GI  + K L  L  LN+  C  +T 
Sbjct: 373 VSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTD 432

Query: 122 ACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEI 167
             L +++ ++  L  ++L  C ++S +G E+  K+  L  LNLG   +
Sbjct: 433 KGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNLGLWHV 480


>gi|198456933|ref|XP_001360491.2| GA22149 [Drosophila pseudoobscura pseudoobscura]
 gi|198135799|gb|EAL25066.2| GA22149 [Drosophila pseudoobscura pseudoobscura]
          Length = 529

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 165/340 (48%), Gaps = 55/340 (16%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 111
           G+  L SLN+  C  + D ++       L NLK+L +S C ++TD+ +  + + L+ L  
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLEN 282

Query: 112 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L L GC        L     L  L +LNL  C  +SD G      IG L     GF+  T
Sbjct: 283 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 332

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLT 227
            E            +L L+  G+ D             C  LSD  +G     H++ GLT
Sbjct: 333 AE-----------GNLQLEHLGLQD-------------CQRLSDEALG-----HIAQGLT 363

Query: 228 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-F 283
           +L+SINLSF   ++D  L+ LA +  L+ LNL +   I+D G+A LT   +G+  LD+ F
Sbjct: 364 SLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSF 423

Query: 284 GARITDSGAAYL-RNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTL 341
             +I+D    ++ +    LRSL +    +TD G VK  K L  L  LN+ Q   +TDK L
Sbjct: 424 CDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGL 483

Query: 342 E-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
           + L   LT L ++++   ++++S G+  +  L  L+ L L
Sbjct: 484 QTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 523



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 40/245 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVN--LKG 56
           GL  L  L+ R    I+ QG+   AG         + L  L L+ C R+    +    +G
Sbjct: 302 GLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQG 361

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L  L+S+N+ +C  +TDS +K L+ +  L+ L + SC  ++D G+AYL +G   +  L++
Sbjct: 362 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 421

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C  ++   L  ++  L  L  L+LN+CQ++D G  K +                    
Sbjct: 422 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIA-------------------- 461

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
              K L  LE+LN+  C  I D+GL  L   L NLK ++L   TQ+ S G+  +  L  L
Sbjct: 462 ---KSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKL 518

Query: 230 ESINL 234
           + +NL
Sbjct: 519 QKLNL 523



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 34/237 (14%)

Query: 177 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 227
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 281

Query: 228 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-------- 275
           NLE     N++ TG+    L    GL  L+ LNL +   I+D G+  L   +        
Sbjct: 282 NLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 337

Query: 276 GLTHLDLFG-ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 331
            L HL L    R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 338 QLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 396

Query: 332 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 385
              N++D  +  L  G +G+ SL+VS   +I+   L H+ + L  LRSL+L  C++T
Sbjct: 397 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 453



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 7/166 (4%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESL 63
            GL++L S++     ++T  G+K  A +  L +L+L  C  I   G+  L +G   + SL
Sbjct: 360 QGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSL 419

Query: 64  NIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VT 120
           ++ +C+ I+D  +  ++ GL  L+SL ++  ++TD G+  + K LQ+L  LN+  C  +T
Sbjct: 420 DVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRIT 479

Query: 121 AACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 164
              L +L+  L +L  ++L  C QLS  G +   K+  L+ LNLG 
Sbjct: 480 DKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGL 525


>gi|195150157|ref|XP_002016021.1| GL10712 [Drosophila persimilis]
 gi|194109868|gb|EDW31911.1| GL10712 [Drosophila persimilis]
          Length = 529

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 165/340 (48%), Gaps = 55/340 (16%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 111
           G+  L SLN+  C  + D ++       L NLK+L +S C ++TD+ +  + + L+ L  
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLEN 282

Query: 112 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L L GC        L     L  L +LNL  C  +SD G      IG L     GF+  T
Sbjct: 283 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 332

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLT 227
            E            +L L+  G+ D             C  LSD  +G     H++ GLT
Sbjct: 333 AE-----------GNLQLEHLGLQD-------------CQRLSDEALG-----HIAQGLT 363

Query: 228 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-F 283
           +L+SINLSF   ++D  L+ LA +  L+ LNL +   I+D G+A LT   +G+  LD+ F
Sbjct: 364 SLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSF 423

Query: 284 GARITDSGAAYL-RNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTL 341
             +I+D    ++ +    LRSL +    +TD G VK  K L  L  LN+ Q   +TDK L
Sbjct: 424 CDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGL 483

Query: 342 E-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
           + L   LT L ++++   ++++S G+  +  L  L+ L L
Sbjct: 484 QTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 523



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 40/245 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVN--LKG 56
           GL  L  L+ R    I+ QG+   AG         + L  L L+ C R+    +    +G
Sbjct: 302 GLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQG 361

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L  L+S+N+ +C  +TDS +K L+ +  L+ L + SC  ++D G+AYL +G   +  L++
Sbjct: 362 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 421

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C  ++   L  ++  L  L  L+LN+CQ++D G  K +                    
Sbjct: 422 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIA-------------------- 461

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
              K L  LE+LN+  C  I D+GL  L   L NLK ++L   TQ+ S G+  +  L  L
Sbjct: 462 ---KSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKL 518

Query: 230 ESINL 234
           + +NL
Sbjct: 519 QKLNL 523



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 34/237 (14%)

Query: 177 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 227
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 281

Query: 228 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-------- 275
           NLE     N++ TG+    L    GL  L+ LNL +   I+D G+  L   +        
Sbjct: 282 NLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 337

Query: 276 GLTHLDLFG-ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 331
            L HL L    R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 338 QLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 396

Query: 332 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 385
              N++D  +  L  G +G+ SL+VS   +I+   L H+ + L  LRSL+L  C++T
Sbjct: 397 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 453



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 7/166 (4%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESL 63
            GL++L S++     ++T  G+K  A +  L +L+L  C  I   G+  L +G   + SL
Sbjct: 360 QGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSL 419

Query: 64  NIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VT 120
           ++ +C+ I+D  +  ++ GL  L+SL ++  ++TD G+  + K LQ+L  LN+  C  +T
Sbjct: 420 DVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRIT 479

Query: 121 AACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 164
              L +L+  L +L  ++L  C QLS  G +   K+  L+ LNLG 
Sbjct: 480 DKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGL 525


>gi|56797879|emb|CAH04901.1| internalin A [Listeria monocytogenes]
          Length = 483

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 130 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL- 183

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 184 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 233

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 234 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 289

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 290 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 345

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 346 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 403

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 404 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 451



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 46  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 105

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 106 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 160

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 161 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 216

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 217 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 271

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 272 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 325

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 326 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 377

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 378 N-----WLSAGHNQISDLTPLANLTRIT 400


>gi|167861908|gb|ACA05653.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QITD  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQITD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 185/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQITDLTPLANLTRIT 408


>gi|71912406|gb|AAZ53235.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 160/322 (49%), Gaps = 33/322 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTSLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             +  ++ L+ L+ L     +++D  +++L SLT +  L     +I+D     L N   +
Sbjct: 354 --ISPVSSLTKLQRLFFYNNKVSD--VSSLASLTNINWLSAGHNQISD--LTPLANLTRI 407

Query: 302 RSLEICGGGLTDAGVKHIKDLS 323
             L +     T+A V +  ++S
Sbjct: 408 TQLGLNDQAWTNAPVNYKANVS 429



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 185/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTSLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLASLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|300697280|ref|YP_003747941.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
            solanacearum CFBP2957]
 gi|299074004|emb|CBJ53541.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
            solanacearum CFBP2957]
          Length = 1051

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 179/418 (42%), Gaps = 43/418 (10%)

Query: 11   LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM-----KLESLNI 65
            L SLSF  +  ++ + ++A    +    LDL  CT   G  V+  GL       L SL++
Sbjct: 628  LESLSF--HGHLSIEDLRALPPSVR--HLDLSGCT---GAAVSEAGLADLARRPLASLDL 680

Query: 66   KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 125
                 I D +++ L+   +L SL +S +++ D+G   L     LT LN+   P+    + 
Sbjct: 681  SRTR-IGDREVQALASSASLTSLNLSGNRIGDAGAQALGRNTVLTSLNVSANPIGDTGVQ 739

Query: 126  SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
            +L+   SL  L L   ++ + G    +    L+ L++  N+++++    L     L SL 
Sbjct: 740  ALAGSRSLTSLELRGIRIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLTSLK 799

Query: 186  LDSCG------------------------IGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
             + CG                        IGD G++ +    +L+ L LS   +   GLR
Sbjct: 800  ANDCGLTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLR 859

Query: 222  HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
             L     L S+++S  G  D     L+   +L SL L    I   G   LT+   L  LD
Sbjct: 860  PLELSRTLTSLDVSRIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLTANRTLISLD 919

Query: 282  LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
            L G  I  + A  L +   L SL +    L D     + +  +LT L++S N  L+ +  
Sbjct: 920  LRGNTIDVAAATALAHTGRLGSLNVSDCKLDDEAASALAESLTLTALDVSMN-RLSSQAA 978

Query: 342  ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
              ++G   L SLN+S++ I   G + L       S +L      ANDI    +R L N
Sbjct: 979  RALAGNATLTSLNISHNHIGPDGAQALA-----ESTSLTFLDARANDIGEAGARALEN 1031



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 97/194 (50%), Gaps = 25/194 (12%)

Query: 168 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 227
           + E + +L GL  LESLN+    IGD G   L    +L+ L  ++  +G++G R L+   
Sbjct: 143 SSEAIAYLAGLP-LESLNVAGADIGDGGARLLAANPSLRALNAANGGIGAAGARALAESP 201

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
            L S++LS  GI D   R LAG  SL +L +    +TD G  AL     LT LDL G  I
Sbjct: 202 VLTSLDLSQNGIGDEGARALAGSRSLTNLAVLNCLVTDVGARALAGNRTLTALDL-GNLI 260

Query: 288 TDSG-----AAYLRNF--------------KNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
           T++G     AAY R                ++L SL I G    DAGV+ +   S+LT L
Sbjct: 261 TETGNELEQAAYDRTANEITAQGAWALAQNRSLTSLSIQGNLCGDAGVQALAGSSTLTSL 320

Query: 329 NLSQNCNLTDKTLE 342
           N++     TD TLE
Sbjct: 321 NVA----YTDMTLE 330



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 14/236 (5%)

Query: 1    MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
            M + L+ + +L +L    +N+I   G+ A A   +L  L+L          + L+GL  L
Sbjct: 809  MAQQLARIRSLRTLEVG-SNSIGDTGVLAIARNASLRTLNLSHNP------ITLQGLRPL 861

Query: 61   E------SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
            E      SL++    C  D     LS    L SL++  + +  +G   L   + L  L+L
Sbjct: 862  ELSRTLTSLDVSRIGC-GDRGALLLSKNRALTSLKLGFNGIGSAGAQGLTANRTLISLDL 920

Query: 115  EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
             G  +  A   +L+  G L  LN++ C+L D+     ++  +L  L++  N ++ +    
Sbjct: 921  RGNTIDVAAATALAHTGRLGSLNVSDCKLDDEAASALAESLTLTALDVSMNRLSSQAARA 980

Query: 175  LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
            L G   L SLN+    IG +G   L    +L  L+     +G +G R L   T ++
Sbjct: 981  LAGNATLTSLNISHNHIGPDGAQALAESTSLTFLDARANDIGEAGARALENNTRMQ 1036


>gi|335427390|ref|ZP_08554321.1| Rab family protein [Haloplasma contractile SSD-17B]
 gi|334895063|gb|EGM33243.1| Rab family protein [Haloplasma contractile SSD-17B]
          Length = 1451

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 102/330 (30%), Positives = 166/330 (50%), Gaps = 27/330 (8%)

Query: 53   NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTL 111
            +L  L  +++L   W      +D+  L+ L+NL SL +S ++V+D + +  L  LQ + L
Sbjct: 1097 DLSSLQNIKTLKNLWLENNNITDLSVLANLSNLDSLYLSNNQVSDLTPLINLANLQNVYL 1156

Query: 112  LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
             N +         ++ S + +L  L+L+  Q++D      S   +L  L+L  N+ITD  
Sbjct: 1157 SNNQ----VTTLPENFSNMLNLNGLHLSGNQITD--VTPLSTAPALIELDLSNNQITD-- 1208

Query: 172  LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
            L +   LT L SLNL+   I D  L  L  L  L  L L++ Q+  S L  L GLTNL  
Sbjct: 1209 LTNYDLLTYLFSLNLNDNSISD--LTPLANLTKLSSLRLNNNQI--SDLTPLGGLTNLTH 1264

Query: 232  INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
            +      ISD  L  L  L+ +  L L+  QI+D  L AL+SLT L++L +   +ITD  
Sbjct: 1265 LYAENNAISD--LTPLTNLNKIWYLVLNGNQISD--LTALSSLTDLSYLRMNNNQITD-- 1318

Query: 292  AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
               L   +NLR  ++       + + ++ + +S++ L L+ N  ++D  + +IS  TGL 
Sbjct: 1319 ---LSPLQNLRLSDLQLNNNLISDLSYLANSTSISKLLLNNN-QISD--ISVISNFTGLR 1372

Query: 352  SLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
            +L + ++ I+   L  L    NL  L L +
Sbjct: 1373 TLELDDNMISD--LSALSSQTNLELLYLRN 1400


>gi|290991638|ref|XP_002678442.1| leucine rich repeat domain-containing protein [Naegleria gruberi]
 gi|284092054|gb|EFC45698.1| leucine rich repeat domain-containing protein [Naegleria gruberi]
          Length = 646

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 140/297 (47%), Gaps = 36/297 (12%)

Query: 11  LTSLSFRRNNAITAQGMKAFAG--LINLVKLDL-------ERCTRIHGGLVNLKGLMKLE 61
           L SL+   NN I + G K  A   L +L++L+L       + C  +  G     GL+ L 
Sbjct: 302 LESLNETNNNGIKSNGCKYLANGNLNHLIQLNLSGNRIYSKGCQYLSNG-----GLLTLT 356

Query: 62  SLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYL--KGLQKLTLLNLEGCP 118
            LN+  C    D+     +G L NL  L +S + +  SGI ++    +  LT L+LE C 
Sbjct: 357 HLNLSCCALDFDACQYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSLESCE 416

Query: 119 VTAA--CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL----------GFNE 166
           V  +       + + SL YLN++   +SD+GC+  +K   L + +L          GF E
Sbjct: 417 VRPSDCAFIGNADVSSLVYLNISNNPISDEGCKNLAKAQFLSLQDLYLRDCQIGSSGFAE 476

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           +T        G+  L  L +D+  IGDEG +N++ L  L  L +S+  +GS G R +S L
Sbjct: 477 LT------ANGIGKLTKLYVDNNNIGDEGCLNISSLPFLNLLSVSNNNLGSKGCRCISLL 530

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
             L+ + +S   +       L  LS L+ L+L    I D G   L +   LT++ +F
Sbjct: 531 PQLQHLTISRNNVGSSGCLYLNALSKLEYLDLVGNDIRDAGCEILCN-GSLTNVRVF 586



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 137/333 (41%), Gaps = 50/333 (15%)

Query: 92  CSKVTDSGIAYLKGLQKLTLLNL------EGCPVTA----ACLDSLSALGSLFYLN-LNR 140
           C  +T S +  L GL  L +++       +GC   A     CL SL    SL  LN  N 
Sbjct: 253 CEYLTSSAVTSLTGLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDV--SLESLNETNN 310

Query: 141 CQLSDDGCEKFSK--IGSLKVLNLGFNEITDECLVHLK--GLTNLESLNLDSCGIGDEGL 196
             +  +GC+  +   +  L  LNL  N I  +   +L   GL  L  LNL  C +  +  
Sbjct: 311 NGIKSNGCKYLANGNLNHLIQLNLSGNRIYSKGCQYLSNGGLLTLTHLNLSCCALDFDAC 370

Query: 197 VNLTG--LCNLKCLELSDTQVGSSGLRHL--SGLTNLESINLSFTGI--SDGSLRKLAGL 250
             L    L NL  L LS   +  SG++ +    + NL  ++L    +  SD +    A +
Sbjct: 371 QYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSLESCEVRPSDCAFIGNADV 430

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
           SSL  LN+    I+D G   L     L+  DL+                 LR  +I   G
Sbjct: 431 SSLVYLNISNNPISDEGCKNLAKAQFLSLQDLY-----------------LRDCQIGSSG 473

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
             +     I  L+ L +     N N+ D+    IS L  L  L+VSN+ + S G R +  
Sbjct: 474 FAELTANGIGKLTKLYV----DNNNIGDEGCLNISSLPFLNLLSVSNNNLGSKGCRCISL 529

Query: 371 LKNLRSLTLESCKVTA------NDIKRLQSRDL 397
           L  L+ LT+    V +      N + +L+  DL
Sbjct: 530 LPQLQHLTISRNNVGSSGCLYLNALSKLEYLDL 562



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 38/200 (19%)

Query: 217 SSGLRHLSGLTNLESINLSFT-------GISDGSLRKLAGLS-SLKSLN-LDARQITDTG 267
           SS +  L+GLT+LE ++   +        +++G L+ L  L  SL+SLN  +   I   G
Sbjct: 258 SSAVTSLTGLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDVSLESLNETNNNGIKSNG 317

Query: 268 LAALTS--LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
              L +  L  L  L+L G RI   G  YL N          GG LT            L
Sbjct: 318 CKYLANGNLNHLIQLNLSGNRIYSKGCQYLSN----------GGLLT------------L 355

Query: 326 TLLNLSQNCNLTDKTLELISG--LTGLVSLNVSNSRITSAGLRHL--KPLKNLRSLTLES 381
           T LNLS  C L     + +    L  LV LN+S + +  +G++ +    + NL  L+LES
Sbjct: 356 THLNLSC-CALDFDACQYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSLES 414

Query: 382 CKVTANDIKRLQSRDLPNLV 401
           C+V  +D   + + D+ +LV
Sbjct: 415 CEVRPSDCAFIGNADVSSLV 434


>gi|343421695|emb|CCD18730.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
          Length = 582

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 35/331 (10%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           + GL NL+ L +S ++V D     L     LT +NL  C   +  +  L+ + SL  L+L
Sbjct: 123 IGGLKNLRELDLSGTRVQDEVFYELSENPNLTKVNLRQCQGLSD-VSPLADIESLQELDL 181

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
             C+  ++G +  +++ +L+VLNL    +  + L  L    +LE LNL SC    + L++
Sbjct: 182 GLCRSINEGVQDLAELPNLRVLNLEKVNVPSDSLFELCKSRSLEKLNLSSC----KRLLD 237

Query: 199 LTGLCNLKCLELSDTQVGSS---GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           ++ L  +K L   D  +  S   G+  L  L  L  +NL  T ++D SL  L+   SL+ 
Sbjct: 238 VSPLSEIKTLVELDLSLCCSLFTGVSELGKLQCLRILNLRNTAVTDHSLPGLSESDSLEI 297

Query: 256 LNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
           LNL + R +T+  ++ L  +  L  LDL        G   L     L +L++    +T+ 
Sbjct: 298 LNLSSCRGLTN--VSPLKEIKSLVQLDLSNCPALRDGIGSLVALPFLCTLKLRNTAITNE 355

Query: 315 GVK-----------------------HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
            ++                       HI  L++L  LNLS   NL  K +E I+ L  L 
Sbjct: 356 SLRDICESESLEELDASSCTALSDVFHISVLNTLVELNLSFCPNLV-KGMEAIASLPFLR 414

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
           +L++S + IT+  LR L+   +L +++L SC
Sbjct: 415 ALDISGTPITNHCLRGLRKSNSLETVSLRSC 445



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 193/434 (44%), Gaps = 69/434 (15%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
            LS   NLT ++ R+   ++   +   A + +L +LDL  C  I+ G+ +L  L  L  L
Sbjct: 146 ELSENPNLTKVNLRQCQGLS--DVSPLADIESLQELDLGLCRSINEGVQDLAELPNLRVL 203

Query: 64  NIKWCNCITDS----------------------DMKPLSGLTNLKSLQIS--CSKVTDSG 99
           N++  N  +DS                      D+ PLS +  L  L +S  CS  T  G
Sbjct: 204 NLEKVNVPSDSLFELCKSRSLEKLNLSSCKRLLDVSPLSEIKTLVELDLSLCCSLFT--G 261

Query: 100 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 159
           ++ L  LQ L +LNL    VT   L  LS   SL  LNL+ C+                 
Sbjct: 262 VSELGKLQCLRILNLRNTAVTDHSLPGLSESDSLEILNLSSCR----------------- 304

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
              G   ++      LK + +L  L+L +C    +G+ +L  L  L  L+L +T + +  
Sbjct: 305 ---GLTNVSP-----LKEIKSLVQLDLSNCPALRDGIGSLVALPFLCTLKLRNTAITNES 356

Query: 220 LRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
           LR +    +LE ++  S T +SD  +  ++ L++L  LNL        G+ A+ SL  L 
Sbjct: 357 LRDICESESLEELDASSCTALSD--VFHISVLNTLVELNLSFCPNLVKGMEAIASLPFLR 414

Query: 279 HLDLFGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
            LD+ G  IT+     LR   +L   SL  C   LTD  V ++  +S  TLL L   C +
Sbjct: 415 ALDISGTPITNHCLRGLRKSNSLETVSLRSC-NNLTD--VFYLSKIS--TLLRLDLGCCI 469

Query: 337 T-DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-----DIK 390
           +  K +  +  L  L  LN+  +R  +  +  L   ++L  L L SC   ++     +I+
Sbjct: 470 SLQKGVGTLGKLPRLRILNLEGTRAANDWIIGLSTSRSLAVLILSSCLALSDVSLLANIE 529

Query: 391 RLQSRDLPNLVSFR 404
            L+  D+ N VS R
Sbjct: 530 PLEELDISNCVSIR 543


>gi|171912739|ref|ZP_02928209.1| Leucine-rich repeat [Verrucomicrobium spinosum DSM 4136]
          Length = 443

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 159/341 (46%), Gaps = 43/341 (12%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L G S L SL+   +     + + A + L  L     E C      + + K L +L +L 
Sbjct: 102 LEGFSALRSLNLSHSYVRNIEPLSALSQLQCL-----ELC---QTQVTDFKPLQRLGALQ 153

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-----------------SGIAYLKGLQ 107
                  + SD++PL+ L  L+ L I  +KVTD                 +G+  L  L 
Sbjct: 154 QLDLYSTSVSDLEPLAALHALQQLNICSTKVTDLEPLAGLSSLRQFNFSFTGVTELDPLA 213

Query: 108 KLTLL-NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
           K+T L  LE        LD+L+ L  L  L+L+  ++ D   E  S +G+L+ L      
Sbjct: 214 KITTLQQLEFRLAPIFDLDALAGLRELQKLDLSTTEVRD--LEPLSGLGALQKLYFNHTA 271

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           ++D  L  L GL+ L  L+L  C      +  L GL  L+ L L+ TQV  + L  L+ L
Sbjct: 272 VSD--LGPLAGLSALRKLDL-RCARRVTDIGPLAGLHALQRLILASTQV--TDLTPLTEL 326

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
            NL+ ++LS T +SD  L  L  L++L+SL L + Q++D  LA L +   L  L L   +
Sbjct: 327 RNLQHLDLSRTKVSD--LSPLTSLTALRSLGLTSTQVSD--LAPLAAYRDLQRLFLDSTQ 382

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTD----AGVKHIKDLS 323
           ++D G   +    +L+ L +    +TD    AG+  +K LS
Sbjct: 383 VSDLGP--VAGMNSLQELYVSHTSVTDLGPLAGLTELKRLS 421



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 123/258 (47%), Gaps = 45/258 (17%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L+ ++ L  L FR         + A AGL  L KLDL   T +   L  L GL  L+ 
Sbjct: 210 DPLAKITTLQQLEFRLAPIF---DLDALAGLRELQKLDLS-TTEVRD-LEPLSGLGALQK 264

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           L   + N    SD+ PL+GL+ L+ L + C+ +VTD  I  L GL  L  L L    VT 
Sbjct: 265 L---YFNHTAVSDLGPLAGLSALRKLDLRCARRVTD--IGPLAGLHALQRLILASTQVTD 319

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             L  L+ L +L +L+L+R ++SD                          L  L  LT L
Sbjct: 320 --LTPLTELRNLQHLDLSRTKVSD--------------------------LSPLTSLTAL 351

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            SL L S  + D  L  L    +L+ L L  TQV  S L  ++G+ +L+ + +S T ++D
Sbjct: 352 RSLGLTSTQVSD--LAPLAAYRDLQRLFLDSTQV--SDLGPVAGMNSLQELYVSHTSVTD 407

Query: 242 GSLRKLAGLSSLKSLNLD 259
             L  LAGL+ LK L++D
Sbjct: 408 --LGPLAGLTELKRLSVD 423



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 93/190 (48%), Gaps = 17/190 (8%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E LSGL  L  L F   N      +   AGL  L KLDL RC R    +  L GL  L+ 
Sbjct: 254 EPLSGLGALQKLYF---NHTAVSDLGPLAGLSALRKLDL-RCARRVTDIGPLAGLHALQR 309

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 121
           L +        +D+ PL+ L NL+ L +S +KV+D S +  L  L+ L L + +      
Sbjct: 310 LILASTQV---TDLTPLTELRNLQHLDLSRTKVSDLSPLTSLTALRSLGLTSTQ-----V 361

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           + L  L+A   L  L L+  Q+SD G    + + SL+ L +    +TD  L  L GLT L
Sbjct: 362 SDLAPLAAYRDLQRLFLDSTQVSDLG--PVAGMNSLQELYVSHTSVTD--LGPLAGLTEL 417

Query: 182 ESLNLDSCGI 191
           + L++D C +
Sbjct: 418 KRLSVDECAV 427



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 24/224 (10%)

Query: 161 NLGFNEITDEC--LVHLKGLT-------NLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
           +LG +E+  E   L HL+ L+       + +  N D        + NL+ L +L    L 
Sbjct: 31  DLGLDEVPLEVAELSHLRQLSLGWNYSPSAKKWNPDRSFFNPGAMSNLSELAHLPLEWLD 90

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
               G +    L G + L S+NLS + + +  +  L+ LS L+ L L   Q+TD     L
Sbjct: 91  LRATGFNNCAALEGFSALRSLNLSHSYVRN--IEPLSALSQLQCLELCQTQVTD--FKPL 146

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
             L  L  LDL+   ++D     L     L+ L IC   +TD  ++ +  LSSL   N S
Sbjct: 147 QRLGALQQLDLYSTSVSD--LEPLAALHALQQLNICSTKVTD--LEPLAGLSSLRQFNFS 202

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHLKPL 371
               +T+  L+ ++ +T L  L    + I      AGLR L+ L
Sbjct: 203 -FTGVTE--LDPLAKITTLQQLEFRLAPIFDLDALAGLRELQKL 243


>gi|343423407|emb|CCD18182.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
          Length = 518

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 188/415 (45%), Gaps = 37/415 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L G+S+L  ++    +AI   G   F  +  L  L L R       L +L     L  LN
Sbjct: 105 LCGMSSLEEVALHNASAIVHIG--RFGRMPCLRVLTLHRVGVTDDFLCSLTTSGSLTHLN 162

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +  C+ +TD  ++PL+ +  L+ + +S S     G+  L  L +L  LNL+   VT  CL
Sbjct: 163 LTECSRLTD--VEPLASIKTLEQVNLSGSFPGVRGLGALGSLPRLRELNLKHTAVTDDCL 220

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-----------GF--------- 164
            +LSA  +L  L L  C+   D      KI SL+V++L           GF         
Sbjct: 221 KTLSASKTLVRLFLGDCRRLTD-VTPLVKISSLQVVDLSDCSGITKGMGGFGTLPGLYLL 279

Query: 165 ----NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
                 +TDE L  L    +LESL++  C  + D G++    +  L+ L++S+    + G
Sbjct: 280 SLTGTALTDEQLQELCASQSLESLSIKRCKLLTDVGVLGF--VTTLRELDMSECDGVARG 337

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT 278
               S L  L S+ ++FT +++  L ++A  + L  L++   +++TD  ++ L  +  L 
Sbjct: 338 FCSFSALRELRSLYMTFTRVTNECLCEIAKCTQLVKLSVAGCKKLTD--ISCLAQVHTLE 395

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
            L++      D G   L   + LR+L +    + +  ++ +    +L    L     +TD
Sbjct: 396 DLNVNMCEHIDDGLGVLGGLEELRTLRMSSTAVGNDELRLVCKSKTLERSELEGCERITD 455

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
             +  ++    L+ LN+   +    G+  L  L  LR ++L+   VT +D+K L+
Sbjct: 456 --VSALAAAQSLMFLNLDKCQKVVTGVGELGKLPALRVISLQGATVTEDDMKSLK 508



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 138/311 (44%), Gaps = 41/311 (13%)

Query: 18  RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI---KWCNCITDS 74
           ++ A+T   +K  +    LV+L L  C R    L ++  L+K+ SL +     C+ IT  
Sbjct: 211 KHTAVTDDCLKTLSASKTLVRLFLGDCRR----LTDVTPLVKISSLQVVDLSDCSGITKG 266

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG--- 131
            M     L  L  L ++ + +TD  +  L   Q L  L+++ C +    L  +  LG   
Sbjct: 267 -MGGFGTLPGLYLLSLTGTALTDEQLQELCASQSLESLSIKRCKL----LTDVGVLGFVT 321

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL--------------KG 177
           +L  L+++ C     G   FS +  L+ L + F  +T+ECL  +              K 
Sbjct: 322 TLRELDMSECDGVARGFCSFSALRELRSLYMTFTRVTNECLCEIAKCTQLVKLSVAGCKK 381

Query: 178 LTN---------LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           LT+         LE LN++ C   D+GL  L GL  L+ L +S T VG+  LR +     
Sbjct: 382 LTDISCLAQVHTLEDLNVNMCEHIDDGLGVLGGLEELRTLRMSSTAVGNDELRLVCKSKT 441

Query: 229 LESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           LE   L     I+D S   LA   SL  LNLD  Q   TG+  L  L  L  + L GA +
Sbjct: 442 LERSELEGCERITDVS--ALAAAQSLMFLNLDKCQKVVTGVGELGKLPALRVISLQGATV 499

Query: 288 TDSGAAYLRNF 298
           T+     L+ +
Sbjct: 500 TEDDMKSLKMY 510


>gi|223698697|gb|ACN19038.1| truncated internalin A [Listeria monocytogenes]
 gi|223698841|gb|ACN19134.1| truncated internalin A [Listeria monocytogenes]
 gi|223698877|gb|ACN19158.1| truncated internalin A [Listeria monocytogenes]
 gi|223698922|gb|ACN19188.1| truncated internalin A [Listeria monocytogenes]
          Length = 406

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL- 106

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 107 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|428303964|ref|YP_007140789.1| hypothetical protein Cri9333_0293 [Crinalium epipsammum PCC 9333]
 gi|428245499|gb|AFZ11279.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
           9333]
          Length = 409

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 133/264 (50%), Gaps = 27/264 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L G+  L +L+  R +      +   AGL NL  L L+     H  + ++K L  L +L+
Sbjct: 156 LEGIQALRNLTILRLDGNKISDVTPLAGLTNLRNLRLD-----HSQISDVKPLTGLTNLS 210

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           + + N    SD+ PL+GL NL+ L++  ++++D  +  L GL  L  L L+         
Sbjct: 211 VLYLNKNQISDVTPLAGLINLRDLRLDQNQISD--VTPLAGLINLRGLGLDQ-------- 260

Query: 125 DSLSALGSLF-YLNLNRCQLSD--DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           + +S +  LF ++NL    L+D  D    FS + +L VL L  N+I+D  +  L  LTNL
Sbjct: 261 NQISDVKPLFGFVNLTTLYLNDNSDVTPLFS-LANLTVLTLYDNKISD--VKPLTALTNL 317

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L LD   I D  +  L  L  L  L L+D Q+  S +  L+GL  L S+ LS   ISD
Sbjct: 318 TVLELDQNQISD--VKPLASLARLTRLSLNDNQI--SDVEPLAGLAKLTSLRLSQNQISD 373

Query: 242 GSLRKLAGLSSLKSLNLDARQITD 265
             ++ L GL++L  L L    I++
Sbjct: 374 --VKPLTGLTNLSGLGLSDNPISN 395



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 138/286 (48%), Gaps = 44/286 (15%)

Query: 48  HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 107
           +  + +L+G+  L +L I   +    SD+ PL+GLTNL++L++  S+++D  +  L GL 
Sbjct: 150 NAEITSLEGIQALRNLTILRLDGNKISDVTPLAGLTNLRNLRLDHSQISD--VKPLTGLT 207

Query: 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
            L                      S+ YLN N  Q+SD      + + +L+ L L  N+I
Sbjct: 208 NL----------------------SVLYLNKN--QISD--VTPLAGLINLRDLRLDQNQI 241

Query: 168 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 227
           +D  +  L GL NL  L LD   I D  +  L G  NL  L L+D    +S +  L  L 
Sbjct: 242 SD--VTPLAGLINLRGLGLDQNQISD--VKPLFGFVNLTTLYLND----NSDVTPLFSLA 293

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           NL  + L    ISD  ++ L  L++L  L LD  QI+D  +  L SL  LT L L   +I
Sbjct: 294 NLTVLTLYDNKISD--VKPLTALTNLTVLELDQNQISD--VKPLASLARLTRLSLNDNQI 349

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           +D     L     L SL +    ++D  VK +  L++L+ L LS N
Sbjct: 350 SD--VEPLAGLAKLTSLRLSQNQISD--VKPLTGLTNLSGLGLSDN 391



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 159/307 (51%), Gaps = 26/307 (8%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           KLE+  I+    I DS    L  L  +K L  + +++T   +  ++ L+ LT+L L+G  
Sbjct: 118 KLEAA-IRRQVEIPDSKRLTLEVLQGIKVLDANNAEIT--SLEGIQALRNLTILRLDGNK 174

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           ++      L+ L +L  L L+  Q+SD   +  + + +L VL L  N+I+D  +  L GL
Sbjct: 175 ISDVT--PLAGLTNLRNLRLDHSQISD--VKPLTGLTNLSVLYLNKNQISD--VTPLAGL 228

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            NL  L LD   I D  +  L GL NL+ L L   Q+  S ++ L G  NL ++ L+   
Sbjct: 229 INLRDLRLDQNQISD--VTPLAGLINLRGLGLDQNQI--SDVKPLFGFVNLTTLYLN--- 281

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
             +  +  L  L++L  L L   +I+D  +  LT+LT LT L+L   +I+D     L + 
Sbjct: 282 -DNSDVTPLFSLANLTVLTLYDNKISD--VKPLTALTNLTVLELDQNQISD--VKPLASL 336

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
             L  L +    ++D  V+ +  L+ LT L LSQN  ++D  ++ ++GLT L  L +S++
Sbjct: 337 ARLTRLSLNDNQISD--VEPLAGLAKLTSLRLSQN-QISD--VKPLTGLTNLSGLGLSDN 391

Query: 359 RITSAGL 365
            I++  L
Sbjct: 392 PISNCQL 398


>gi|430743420|ref|YP_007202549.1| hypothetical protein Sinac_2547 [Singulisphaera acidiphila DSM
           18658]
 gi|430015140|gb|AGA26854.1| hypothetical protein Sinac_2547 [Singulisphaera acidiphila DSM
           18658]
          Length = 356

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 5/229 (2%)

Query: 72  TDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSA 129
           T++ M  +  L+ L+ L  +  SK+T++G+ +L+ L +L +++L   P VT   L  L+ 
Sbjct: 121 TNATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHLAE 180

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 188
           L SL  LNL+      D            +   G  N ITDE L +LKGLT L  L L +
Sbjct: 181 LTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGITDEGLANLKGLTELRELILRN 240

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             +   GL  L G+  +  L+L ++ + +  L  L  +T L+S+ +  + + D  L+ + 
Sbjct: 241 SQVTGTGLTALQGMIAMADLKLINSHLET--LEPLQRMTGLKSLWIHRSPLDDRGLKHVE 298

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            L SL+ L+L+  +ITD GL +L  L GL  +D  G  +T  G+A  + 
Sbjct: 299 NLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGVTIMGSATFQQ 347



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 111/244 (45%), Gaps = 33/244 (13%)

Query: 99  GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSL 157
           G  Y   +++ +L    G   T A +  +  L  L  L+     +L++ G      +  L
Sbjct: 104 GPDYFGSVKQASL----GSQATNATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRL 159

Query: 158 KVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-------------------------GI 191
           ++++L     +T + L+HL  LT+LE LNL S                          GI
Sbjct: 160 RMVDLSLLPGVTGKGLIHLAELTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGI 219

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            DEGL NL GL  L+ L L ++QV  +GL  L G+  +  + L  + +   +L  L  ++
Sbjct: 220 TDEGLANLKGLTELRELILRNSQVTGTGLTALQGMIAMADLKLINSHLE--TLEPLQRMT 277

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            LKSL +    + D GL  + +L  L +L L   RITD G   L + + LR ++  G G+
Sbjct: 278 GLKSLWIHRSPLDDRGLKHVENLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGV 337

Query: 312 TDAG 315
           T  G
Sbjct: 338 TIMG 341



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 129/245 (52%), Gaps = 37/245 (15%)

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG---IGDEGLVNLTGLCNLKCLEL 210
            GS+K  +LG ++ T+  + H+  L+ LE   LD+ G   + + GLV+L  L  L+ ++L
Sbjct: 108 FGSVKQASLG-SQATNATMSHVGRLSQLE--ELDATGGSKLTNAGLVHLQSLTRLRMVDL 164

Query: 211 SD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA--RQITDTG 267
           S    V   GL HL+ LT+LE +NLS + ++D  L  L+ L++L+ L L+     ITD G
Sbjct: 165 SLLPGVTGKGLIHLAELTSLERLNLS-SPVADADLVNLSRLTNLRLLRLNGGGNGITDEG 223

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
           LA L  LT L  L L  +++T +G   L+    +  L++                     
Sbjct: 224 LANLKGLTELRELILRNSQVTGTGLTALQGMIAMADLKLI-------------------- 263

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387
                N +L  +TLE +  +TGL SL +  S +   GL+H++ LK+L+ L+LE  ++T +
Sbjct: 264 -----NSHL--ETLEPLQRMTGLKSLWIHRSPLDDRGLKHVENLKSLQYLSLEDTRITDD 316

Query: 388 DIKRL 392
            +K L
Sbjct: 317 GLKSL 321



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 87/209 (41%), Gaps = 27/209 (12%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIK 66
           LS L  L     + +T  G+     L  L  +DL     + G GL++L  L  LE LN+ 
Sbjct: 131 LSQLEELDATGGSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHLAELTSLERLNLS 190

Query: 67  WC------------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 102
                                     N ITD  +  L GLT L+ L +  S+VT +G+  
Sbjct: 191 SPVADADLVNLSRLTNLRLLRLNGGGNGITDEGLANLKGLTELRELILRNSQVTGTGLTA 250

Query: 103 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162
           L+G+  +  L L    +    L+ L  +  L  L ++R  L D G +    + SL+ L+L
Sbjct: 251 LQGMIAMADLKLINSHL--ETLEPLQRMTGLKSLWIHRSPLDDRGLKHVENLKSLQYLSL 308

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGI 191
               ITD+ L  L  L  L  ++    G+
Sbjct: 309 EDTRITDDGLKSLLDLRGLREVDARGTGV 337


>gi|27574254|pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes)  E-Cadherin (Human)
           Recognition Complex
 gi|27574256|pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
           Domain, Uncomplexed
 gi|27574257|pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
           Domain, Uncomplexed
 gi|27574258|pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
           Domain, Uncomplexed
          Length = 466

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 108 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL- 161

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 162 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 211

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 212 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 267

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 268 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 323

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 324 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 381

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 382 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 429



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 184/387 (47%), Gaps = 64/387 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 24  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 83

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L
Sbjct: 84  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 141

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  
Sbjct: 142 SSN--TISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV-- 194

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L
Sbjct: 195 LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL 250

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + 
Sbjct: 251 ANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISP 304

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N
Sbjct: 305 ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN 356

Query: 355 VSNSRITSAG---LRHLKPLKNLRSLT 378
                  SAG   +  L PL NL  +T
Sbjct: 357 -----WLSAGHNQISDLTPLANLTRIT 378


>gi|290976022|ref|XP_002670740.1| predicted protein [Naegleria gruberi]
 gi|284084302|gb|EFC37996.1| predicted protein [Naegleria gruberi]
          Length = 213

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 101/195 (51%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           LN+   ++  +G +  S++  L  L++  NEI  E   ++  +  L SL++    IG EG
Sbjct: 7   LNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYNEIGVEG 66

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
              ++ +  L  L++   Q+G  G +++S +  L S+++ +  I     + ++ ++ L S
Sbjct: 67  SKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISEMNQLTS 126

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L++ + QI   G   ++ +  LT LD+    I   G+ Y+   K+L SL+I    +   G
Sbjct: 127 LDIHSNQIGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSNEIGVEG 186

Query: 316 VKHIKDLSSLTLLNL 330
            K+I +++ LT L++
Sbjct: 187 AKYISEMNQLTSLDM 201



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 104/211 (49%), Gaps = 1/211 (0%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L SLN+    IG EG   ++ +  L  L++   ++G  G +++S +  L S+++ + 
Sbjct: 1   MKQLTSLNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYN 60

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I     + ++ ++ L SL++ + QI   G   ++ +  LT LD+    I   G+ Y+  
Sbjct: 61  EIGVEGSKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISE 120

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
              L SL+I    +   G K I ++ SLT L++  N  +  +  + IS +  L SL++ +
Sbjct: 121 MNQLTSLDIHSNQIGVEGAKFISEMKSLTSLDIHYN-EIGVEGSKYISEMKSLTSLDIYS 179

Query: 358 SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           + I   G +++  +  L SL +   K+   +
Sbjct: 180 NEIGVEGAKYISEMNQLTSLDMLPIKLVQKE 210



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 90/174 (51%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           LN+G+NEI  E    +  +  L SL++ S  IG EG   ++ +  L  L++   ++G  G
Sbjct: 7   LNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYNEIGVEG 66

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
            +++S +  L S+++    I     + ++ +  L SL++   +I   G   ++ +  LT 
Sbjct: 67  SKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISEMNQLTS 126

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           LD+   +I   GA ++   K+L SL+I    +   G K+I ++ SLT L++  N
Sbjct: 127 LDIHSNQIGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSN 180


>gi|441470006|emb|CCQ19761.1| Internalin-A [Listeria monocytogenes]
          Length = 489

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL- 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|242057027|ref|XP_002457659.1| hypothetical protein SORBIDRAFT_03g011312 [Sorghum bicolor]
 gi|241929634|gb|EES02779.1| hypothetical protein SORBIDRAFT_03g011312 [Sorghum bicolor]
          Length = 81

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 45/53 (84%)

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
           L+K++GLSS+K LNLD RQIT+TGLA+L SLTGLTHLDLFGARI DSG    R
Sbjct: 29  LKKISGLSSMKPLNLDNRQITNTGLASLASLTGLTHLDLFGARIIDSGMNCFR 81


>gi|384251251|gb|EIE24729.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
          Length = 498

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 160/349 (45%), Gaps = 60/349 (17%)

Query: 48  HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTD---SGIAYL 103
            G  V L GL +LE L  K C+ ++      +  L +LK+  ++CS +++D   + IA L
Sbjct: 126 QGFPVMLTGLRQLELLACKGCSGLSSRPFAGIESLVSLKTCLLNCSLRMSDDTCADIASL 185

Query: 104 KGLQKLTLL--NLEGCPVTAAC-----LDSLSALGSLFYLNLN-RCQLSDDGCEKFSK-- 153
           + +Q L L    LEGC +T AC     L SL  +  L  L+L+    +SD    + ++  
Sbjct: 186 RQVQTLGLACSALEGC-LTPACITHAGLRSLCGMTQLTALDLSGHAAISDASMAEIARHL 244

Query: 154 -------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
                  +      N G   +TD  +  L  LT LES+ L    +G  G   L  L  L+
Sbjct: 245 TRLIDLDLRRPACDNPGAAVVTDAGIAALASLTLLESVRLSQAQVGQAGCAALASLPRLR 304

Query: 207 CLE------LSDTQVGS-SGLRHLS--------------------GLTNLESINLS--FT 237
           CLE      LSDT V   + LRHLS                    G+  L  ++LS    
Sbjct: 305 CLELSYCDSLSDTPVCELTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSACHM 364

Query: 238 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS---LTGLTHLDLFGA-RITDSGA 292
            + D SL  +A L +L+ L L +  +++D G+  L S      LTHLD+ G  RI+D+GA
Sbjct: 365 HVGDISLYAIATLPNLQVLRLHSCERVSDMGIGGLCSGAAAAALTHLDVRGCERISDAGA 424

Query: 293 AYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
             + R  K L+  SLE C   + D G++ +  L  L +L +      TD
Sbjct: 425 TSIGRCLKQLQYLSLEHC-HLIGDRGIRTLSGLPHLEILRVGGTGATTD 472


>gi|428225640|ref|YP_007109737.1| hypothetical protein GEI7407_2206 [Geitlerinema sp. PCC 7407]
 gi|427985541|gb|AFY66685.1| leucine-rich repeat-containing protein [Geitlerinema sp. PCC 7407]
          Length = 504

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 173/374 (46%), Gaps = 57/374 (15%)

Query: 50  GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 109
           GL +L  L+ L  L        + SD++PLS L NL++L +S + +TD  +  L  L  L
Sbjct: 85  GLTDLSPLVSLPQLTGLSLYNSSLSDLRPLSSLPNLRALDLSYANLTD--VTVLGTLGTL 142

Query: 110 TLLNLEGCPV--------------------TAACLDSLSALGSLFYLNLNRCQLSDDGCE 149
             LNL G PV                    T   L +L  L +L  L+L+  Q+ D    
Sbjct: 143 QALNLRGNPVRDLRPLQGLQRLHTLTLGWSTVTDLSTLPTLPNLHQLDLSGSQVGD--IR 200

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN--------------LDSCGIGDEG 195
             +    L+ LNL  N I+   L  +  L +L+  N              L+S  + +  
Sbjct: 201 SLAPQPRLETLNLSANRISSIALPAMPSLRSLDLENNALTRVTIPASMGKLESLNLANNA 260

Query: 196 LVNLT---GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           + +L     +  L+ L L+  Q+  + +R ++    L+ ++LSF  I+D  L  LA L +
Sbjct: 261 IASLQFGGQIPALRRLSLASNQL--TEVRAIASQPQLQELDLSFNQITD--LGPLASLGA 316

Query: 253 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           ++ L +   R I+D  L  L  LT L  LDL  A I D     LR  +NL +L + G  +
Sbjct: 317 IRVLKISGNRPISD--LRPLAGLTTLQALDLSEASIRD--ITPLRGLRNLETLVLSGNQI 372

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
               ++ +  L+ L+ L +  N  ++D  L  I+ L  L +L + ++RITS  +R L  L
Sbjct: 373 QQ--LESLSGLNRLSYLAIGGN-QISD--LRAIAALYSLQTLMLDSNRITS--VRPLASL 425

Query: 372 KNLRSLTLESCKVT 385
             L+ LTL + ++T
Sbjct: 426 GQLKVLTLGNNQIT 439



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 136/334 (40%), Gaps = 93/334 (27%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           L  L+GL +L +L + W    T +D+  L  L NL  L +S S+V D  I  L    +L 
Sbjct: 155 LRPLQGLQRLHTLTLGWS---TVTDLSTLPTLPNLHQLDLSGSQVGD--IRSLAPQPRLE 209

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLN--------------------------------- 137
            LNL    +++  L ++ +L SL   N                                 
Sbjct: 210 TLNLSANRISSIALPAMPSLRSLDLENNALTRVTIPASMGKLESLNLANNAIASLQFGGQ 269

Query: 138 ---LNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITD---------------------E 170
              L R  L+ +   +   I S   L+ L+L FN+ITD                      
Sbjct: 270 IPALRRLSLASNQLTEVRAIASQPQLQELDLSFNQITDLGPLASLGAIRVLKISGNRPIS 329

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
            L  L GLT L++L+L    I D  +  L GL NL+ L LS  Q+    L  LSGL  L 
Sbjct: 330 DLRPLAGLTTLQALDLSEASIRD--ITPLRGLRNLETLVLSGNQIQQ--LESLSGLNRLS 385

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD--------------------TGLAA 270
            + +    ISD  LR +A L SL++L LD+ +IT                     T  A 
Sbjct: 386 YLAIGGNQISD--LRAIAALYSLQTLMLDSNRITSVRPLASLGQLKVLTLGNNQITDPAP 443

Query: 271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           L +LTGLT L L   RIT+  A  L    NLR L
Sbjct: 444 LAALTGLTVLQLPQNRITNFDA--LATLTNLRIL 475



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 138/308 (44%), Gaps = 56/308 (18%)

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L  L +L  L  L+L    LSD      S + +L+ L+L +  +TD  +  L  L  L++
Sbjct: 89  LSPLVSLPQLTGLSLYNSSLSD--LRPLSSLPNLRALDLSYANLTDVTV--LGTLGTLQA 144

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           LNL    + D  L  L GL  L  L L  + V  + L  L  L NL  ++LS  G   G 
Sbjct: 145 LNLRGNPVRD--LRPLQGLQRLHTLTLGWSTV--TDLSTLPTLPNLHQLDLS--GSQVGD 198

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSL-------TGLTHLDLFGA-------RITD 289
           +R LA    L++LNL A +I+   L A+ SL         LT + +  +        + +
Sbjct: 199 IRSLAPQPRLETLNLSANRISSIALPAMPSLRSLDLENNALTRVTIPASMGKLESLNLAN 258

Query: 290 SGAAYLR---NFKNLRSLEICGGGLT--------------DAGVKHIKDLSSLT------ 326
           +  A L+       LR L +    LT              D     I DL  L       
Sbjct: 259 NAIASLQFGGQIPALRRLSLASNQLTEVRAIASQPQLQELDLSFNQITDLGPLASLGAIR 318

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
           +L +S N  ++D  L  ++GLT L +L++S      A +R + PL+ LR+  LE+  ++ 
Sbjct: 319 VLKISGNRPISD--LRPLAGLTTLQALDLSE-----ASIRDITPLRGLRN--LETLVLSG 369

Query: 387 NDIKRLQS 394
           N I++L+S
Sbjct: 370 NQIQQLES 377


>gi|85679224|gb|ABC72028.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 137 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 240

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 241 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 296

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 297 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 352

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 353 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 410

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 411 LNDQEWTNPPVKYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 196/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 53  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 112

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 113 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 167

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 168 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 223

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 224 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 278

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 279 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 332

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 333 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 384

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +K   +  +PN V
Sbjct: 385 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVKYKVNVSIPNTV 433


>gi|158429248|pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
          Length = 466

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 107 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL- 160

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 161 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 210

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 211 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 266

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 267 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 322

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 323 ISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 380

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 381 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 428



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 184/387 (47%), Gaps = 64/387 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 23  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 82

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L
Sbjct: 83  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 140

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  
Sbjct: 141 SSN--TISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV-- 193

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L
Sbjct: 194 LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL 249

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + 
Sbjct: 250 ANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISP 303

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N
Sbjct: 304 ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFANNKVSDVSSLANLTNIN 355

Query: 355 VSNSRITSAG---LRHLKPLKNLRSLT 378
                  SAG   +  L PL NL  +T
Sbjct: 356 -----WLSAGHNQISDLTPLANLTRIT 377


>gi|124004058|ref|ZP_01688905.1| Rab family protein [Microscilla marina ATCC 23134]
 gi|123990637|gb|EAY30117.1| Rab family protein [Microscilla marina ATCC 23134]
          Length = 1165

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 170/352 (48%), Gaps = 55/352 (15%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           D+ PL  LT L  L +  +K++D + +  L+GL KL L N +        L  L +L SL
Sbjct: 194 DLAPLQHLTCLTMLSLHHNKISDLAPLQKLRGLLKLDLSNNQ-----LDDLHPLKSLNSL 248

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             L L   Q+SD        + SL+++ L  N +TD  L  L+ L NL+SL+L +  I D
Sbjct: 249 QSLVLRNNQISD--LTPLQALHSLQLIVLRDNPVTD--LTPLQSLRNLQSLDLRNNQISD 304

Query: 194 EGLVNLTGLCNLKCLELSDTQVGS--------------------SGLRHLSGLTNLESIN 233
             L  L  L +L+ ++L    +                      + L  L  L NLESI+
Sbjct: 305 --LTPLQNLSSLQSIDLRHNPINDLLPLQNLPNLQSIDLKYNHINDLAPLQNLPNLESID 362

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           LS   ISD  L  L  LS+L+S++L   Q+    LA+L  L  L  +DL   +I D   A
Sbjct: 363 LSDNQISD--LTPLQNLSNLQSIDLSNNQVN--HLASLQYLPNLESIDLSDNQIND--LA 416

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT---LELISGLTGL 350
            L+N  +L+S+++            I DL+ L  L   ++ +L+D     L  +  L  L
Sbjct: 417 PLQNLGDLQSIDLSNN--------QIHDLTPLQNLPNLESIDLSDNQISDLTPLQNLGSL 468

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
            S+N+ N++++   L  L+ L +L+++ L   +++  D+  LQ   LP+L S
Sbjct: 469 QSINLRNNQVSD--LSPLQALHDLQAINLSDNQIS--DLAPLQK--LPHLKS 514



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 136/280 (48%), Gaps = 36/280 (12%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC---------- 123
           +D+ PL  L NL+SL +  ++++D  +  L+ L  L  ++L   P+              
Sbjct: 281 TDLTPLQSLRNLQSLDLRNNQISD--LTPLQNLSSLQSIDLRHNPINDLLPLQNLPNLQS 338

Query: 124 ----------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
                     L  L  L +L  ++L+  Q+SD        + +L+ ++L  N++    L 
Sbjct: 339 IDLKYNHINDLAPLQNLPNLESIDLSDNQISD--LTPLQNLSNLQSIDLSNNQVN--HLA 394

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L+ L NLES++L    I D  L  L  L +L+ ++LS+ Q+    L  L  L NLESI+
Sbjct: 395 SLQYLPNLESIDLSDNQIND--LAPLQNLGDLQSIDLSNNQI--HDLTPLQNLPNLESID 450

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           LS   ISD  L  L  L SL+S+NL   Q++D  L+ L +L  L  ++L   +I+D   A
Sbjct: 451 LSDNQISD--LTPLQNLGSLQSINLRNNQVSD--LSPLQALHDLQAINLSDNQISD--LA 504

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            L+   +L+S+++    +       I +   LT L+L  N
Sbjct: 505 PLQKLPHLKSIDLRDNQIEVFPEHLITNCPQLTSLHLYHN 544



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 169/348 (48%), Gaps = 45/348 (12%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA----------- 121
           SD+KPL  L NL+ L +S ++V D + +  L GLQ + L   +   +T            
Sbjct: 127 SDLKPLQNLANLQMLDMSDNRVADLTPLQNLPGLQSIVLSKNKVRDLTPLQHLTGLHTLL 186

Query: 122 ------ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
                   L  L  L  L  L+L+  ++SD       K+  L  L+L  N++ D  L  L
Sbjct: 187 LHYNKIGDLAPLQHLTCLTMLSLHHNKISD--LAPLQKLRGLLKLDLSNNQLDD--LHPL 242

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
           K L +L+SL L +  I D  L  L  L +L+ + L D  V  + L  L  L NL+S++L 
Sbjct: 243 KSLNSLQSLVLRNNQISD--LTPLQALHSLQLIVLRDNPV--TDLTPLQSLRNLQSLDLR 298

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
              ISD  L  L  LSSL+S++L    I D     L +L  L  +DL    I D   A L
Sbjct: 299 NNQISD--LTPLQNLSSLQSIDLRHNPINDL--LPLQNLPNLQSIDLKYNHIND--LAPL 352

Query: 296 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
           +N  NL S+++    ++D  +  +++LS+L  ++LS N       L  +  L  L S+++
Sbjct: 353 QNLPNLESIDLSDNQISD--LTPLQNLSNLQSIDLSNN---QVNHLASLQYLPNLESIDL 407

Query: 356 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVS 402
           S+++I       L PL+NL    L+S  ++ N I  L   ++LPNL S
Sbjct: 408 SDNQIND-----LAPLQNLGD--LQSIDLSNNQIHDLTPLQNLPNLES 448



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 14/163 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L  LSNL S+    N       + +   L NL  +DL    +I   L  L+ L  L+S++
Sbjct: 374 LQNLSNLQSIDLSNNQV---NHLASLQYLPNLESIDLSD-NQI-NDLAPLQNLGDLQSID 428

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N I   D+ PL  L NL+S+ +S ++++D  +  L+ L  L  +NL    V+   L
Sbjct: 429 LS-NNQI--HDLTPLQNLPNLESIDLSDNQISD--LTPLQNLGSLQSINLRNNQVSD--L 481

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
             L AL  L  +NL+  Q+SD       K+  LK ++L  N+I
Sbjct: 482 SPLQALHDLQAINLSDNQISD--LAPLQKLPHLKSIDLRDNQI 522


>gi|334116578|ref|ZP_08490670.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
           FGP-2]
 gi|333461398|gb|EGK90003.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
           FGP-2]
          Length = 576

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 110/195 (56%), Gaps = 14/195 (7%)

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
           +DD  E    + S+  L L ++ ITD  +  L+ LTNL +LN ++  I D  + +L  L 
Sbjct: 42  TDDAQEAEQILSSMTELALSYDHITD--ISFLRWLTNLTTLNFENNKITD--ISSLGSLT 97

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           NL  L LS  Q+  + +  L  LTNL +++LS+  I D S   L  L++L  LNL+   I
Sbjct: 98  NLTRLNLSYNQI--TDISFLGSLTNLTTLDLSYNRIIDIS--SLGSLTNLTRLNLNINTI 153

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
           TD  +++L SLT LT LDL   +ITD  +  L +  NL  L++    +TD  +  ++ L+
Sbjct: 154 TD--ISSLGSLTNLTRLDLLSNQITDLSS--LGSLTNLTRLDLSSNPITD--INALRKLT 207

Query: 324 SLTLLNLSQNCNLTD 338
           +LT+L++  N  +T+
Sbjct: 208 NLTILDILSNTRITN 222



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 103/207 (49%), Gaps = 21/207 (10%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           +D+  L  LTNL +L    +K+TD  I+ L  L  LT LNL    +T      +S LGSL
Sbjct: 66  TDISFLRWLTNLTTLNFENNKITD--ISSLGSLTNLTRLNLSYNQIT-----DISFLGSL 118

Query: 134 FYLNLNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
              NL    LS +     S +GS   L  LNL  N ITD  +  L  LTNL  L+L S  
Sbjct: 119 --TNLTTLDLSYNRIIDISSLGSLTNLTRLNLNINTITD--ISSLGSLTNLTRLDLLSNQ 174

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESI-NLSFTGISDGSLRKLA 248
           I D  L +L  L NL  L+LS   +   + LR L+ LT L+ + N   T IS   L +LA
Sbjct: 175 ITD--LSSLGSLTNLTRLDLSSNPITDINALRKLTNLTILDILSNTRITNIS--VLGELA 230

Query: 249 GLS-SLKSLNLDARQITDTGLAALTSL 274
               +L +  +DA++ T+    A  ++
Sbjct: 231 QKRLTLSTRPIDAQKATEAVKVAYAAI 257



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 88/166 (53%), Gaps = 20/166 (12%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113
           L+ L  L +LN +  N ITD  +  L  LTNL  L +S +++TD  I++L  L  LT L+
Sbjct: 71  LRWLTNLTTLNFE-NNKITD--ISSLGSLTNLTRLNLSYNQITD--ISFLGSLTNLTTLD 125

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITDE 170
           L    +       +S+LGSL   NL R  L+ +     S +GS   L  L+L  N+ITD 
Sbjct: 126 LSYNRII-----DISSLGSL--TNLTRLNLNINTITDISSLGSLTNLTRLDLLSNQITD- 177

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE-LSDTQV 215
            L  L  LTNL  L+L S  I D  +  L  L NL  L+ LS+T++
Sbjct: 178 -LSSLGSLTNLTRLDLSSNPITD--INALRKLTNLTILDILSNTRI 220



 Score = 41.2 bits (95), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 85/185 (45%), Gaps = 44/185 (23%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L  L+NLT+L+F  NN IT   + +   L NL +L+L                       
Sbjct: 71  LRWLTNLTTLNF-ENNKIT--DISSLGSLTNLTRLNLS---------------------- 105

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N ITD     L  LTNL +L +S +++ D  I+ L  L  LT LNL    +T    
Sbjct: 106 ---YNQITDISF--LGSLTNLTTLDLSYNRIID--ISSLGSLTNLTRLNLNINTIT---- 154

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITDECLVHLKGLTNL 181
             +S+LGSL   NL R  L  +     S +GS   L  L+L  N ITD  +  L+ LTNL
Sbjct: 155 -DISSLGSL--TNLTRLDLLSNQITDLSSLGSLTNLTRLDLSSNPITD--INALRKLTNL 209

Query: 182 ESLNL 186
             L++
Sbjct: 210 TILDI 214


>gi|298360020|gb|ADI77589.1| truncated internalin A [Listeria monocytogenes]
 gi|298360528|gb|ADI77843.1| truncated internalin A [Listeria monocytogenes]
          Length = 459

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL- 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|219821267|gb|ACL37756.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVKYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 189/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +K   +  +PN V
Sbjct: 341 TPLANLTRITQLGLNDQEWTNPPVKYKVNVSIPNTV 376


>gi|261331192|emb|CBH14182.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 490

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 186/407 (45%), Gaps = 33/407 (8%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQG--MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           EN  G+ NL  L          +G  ++      NLVKL L+ C  +   +  L  +  L
Sbjct: 97  ENFVGIKNLPQLKALEVAEAPIRGGCLQTLTAGCNLVKLCLDSCPYLKD-VSPLAEMTAL 155

Query: 61  ESLNIKWCNCI-TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT-LLNLEGCP 118
           E L I  C C+  ++ +  L  L  L+ L +  + +  +    L+GL   T LLNL  C 
Sbjct: 156 EHLAI--CKCVGIETGIGSLGKLPALRELYLIGTSMRGNS---LRGLGATTSLLNL--CI 208

Query: 119 VTAACLDS---LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
           V+  CL     ++ +  L  L L  C   ++G  K   + +L  L+L ++ I D   V L
Sbjct: 209 VSCGCLTDVLHIADVQVLRQLTLESCTSLEEGVGKLGGLPALYELDLSYSSIVD---VFL 265

Query: 176 KGLTN---LESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNL 229
           +GL++   L  LNL  C    + L +++ L  LK L+   L   +   +G+  L  L  L
Sbjct: 266 QGLSSSRSLVKLNLSWC----DQLTDVSPLAELKTLKYLNLQSCEAVVAGIGDLGKLPGL 321

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARIT 288
             ++LS T I+D +LR L    SL  L++ +   +TD  L+AL SL  L  L+L      
Sbjct: 322 YELDLSCTPITDCALRDLCSSRSLVRLDISSCDNLTD--LSALVSLKTLGELNLDACTEV 379

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
             G   +     LR L+     +TD  ++ +    SL +L L    ++TD  +  ++ + 
Sbjct: 380 KQGIGNISQLPELRRLDGTCLPITDDSLRDLSASRSLVVLCLDTCMDITD--VSCLAAVK 437

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 395
            L  +++++      G+  L  L  LRS+ L   K+ +  +  LQ+R
Sbjct: 438 TLEEISLNSCLSVEKGVEALTTLPRLRSVNLRGVKIDSEVLSELQAR 484


>gi|150371828|dbj|BAF65703.1| internalin A [Listeria monocytogenes]
          Length = 526

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL- 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 184/387 (47%), Gaps = 64/387 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 171

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  
Sbjct: 172 SSN--TISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV-- 224

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L
Sbjct: 225 LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL 280

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + 
Sbjct: 281 ANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISP 334

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N
Sbjct: 335 ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN 386

Query: 355 VSNSRITSAG---LRHLKPLKNLRSLT 378
                  SAG   +  L PL NL  +T
Sbjct: 387 -----WLSAGHNQISDLTPLANLTRIT 408


>gi|255028812|ref|ZP_05300763.1| internalin A [Listeria monocytogenes LO28]
          Length = 502

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 130 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL- 183

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 184 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 233

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 234 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 289

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 290 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 345

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 346 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 403

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 404 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 451



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 184/387 (47%), Gaps = 64/387 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 46  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 105

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L
Sbjct: 106 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 163

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  
Sbjct: 164 SSN--TISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV-- 216

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L
Sbjct: 217 LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL 272

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + 
Sbjct: 273 ANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISP 326

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N
Sbjct: 327 ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN 378

Query: 355 VSNSRITSAG---LRHLKPLKNLRSLT 378
                  SAG   +  L PL NL  +T
Sbjct: 379 -----WLSAGHNQISDLTPLANLTRIT 400


>gi|334117577|ref|ZP_08491668.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
           FGP-2]
 gi|333460686|gb|EGK89294.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
           FGP-2]
          Length = 348

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 133/259 (51%), Gaps = 42/259 (16%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           D+KPL+ LTNL  L +S + + D                          +  L++L +L 
Sbjct: 113 DIKPLASLTNLTRLSLSENPIGD--------------------------IKPLASLTNLT 146

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           +L+L+  Q+ D   +  + + +L +L L  N+I D  +  L  LTNL  L L    IGD 
Sbjct: 147 FLDLSDNQIGD--IKPLASLTNLTILFLSDNQIGD--IKPLASLTNLTFLFLSDNKIGD- 201

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
            +  L  L NL  L+LSD Q+G   ++ L+ LTNL S++LS   I  G ++ LA L++L 
Sbjct: 202 -IKPLASLTNLTFLDLSDNQIGD--IKPLASLTNLSSLDLSDNRI--GDIKPLASLTNLT 256

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
            LNL   QI D  +  L SLT LT L+L G  I D     L +  NLRSL++    + D 
Sbjct: 257 RLNLLDNQIGD--IKPLASLTNLTRLNLDGNVIGD--IKPLASLTNLRSLDLSRNVIGD- 311

Query: 315 GVKHIKDLSSLTLLNLSQN 333
            +K +  L+ LT+L+LS N
Sbjct: 312 -IKPLASLTKLTVLHLSGN 329



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 20/231 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT LS   N       +K  A L NL  LDL         + ++K L  L +L 
Sbjct: 117 LASLTNLTRLSLSEN---PIGDIKPLASLTNLTFLDLS-----DNQIGDIKPLASLTNLT 168

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I + +     D+KPL+ LTNL  L +S +K+ D  I  L  L  LT L+L    +    +
Sbjct: 169 ILFLSDNQIGDIKPLASLTNLTFLFLSDNKIGD--IKPLASLTNLTFLDLSDNQI--GDI 224

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             L++L +L  L+L+  ++ D   +  + + +L  LNL  N+I D  +  L  LTNL  L
Sbjct: 225 KPLASLTNLSSLDLSDNRIGD--IKPLASLTNLTRLNLLDNQIGD--IKPLASLTNLTRL 280

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
           NLD   IGD  +  L  L NL+ L+LS   +G   ++ L+ LT L  ++LS
Sbjct: 281 NLDGNVIGD--IKPLASLTNLRSLDLSRNVIGD--IKPLASLTKLTVLHLS 327



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/196 (35%), Positives = 104/196 (53%), Gaps = 21/196 (10%)

Query: 168 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 227
           T++C    + L++L  L+L    IGD  +  L  L NL  L L   Q+G   ++ L+ LT
Sbjct: 66  TNDCDAADRKLSSLTKLDLFDNQIGD--IKPLASLTNLTWLFLGSNQIGD--IKPLASLT 121

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           NL  ++LS   I  G ++ LA L++L  L+L   QI D  +  L SLT LT L L   +I
Sbjct: 122 NLTRLSLSENPI--GDIKPLASLTNLTFLDLSDNQIGD--IKPLASLTNLTILFLSDNQI 177

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS---LTLLNLSQNCNLTDKTLELI 344
            D     L +  NL  L      L+D  +  IK L+S   LT L+LS N  + D  ++ +
Sbjct: 178 GD--IKPLASLTNLTFL-----FLSDNKIGDIKPLASLTNLTFLDLSDN-QIGD--IKPL 227

Query: 345 SGLTGLVSLNVSNSRI 360
           + LT L SL++S++RI
Sbjct: 228 ASLTNLSSLDLSDNRI 243


>gi|219821288|gb|ACL37770.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVKYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 189/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +K   +  +PN V
Sbjct: 341 TPLANLTRITQLGLNDQEWTNPPVKYKVNVSIPNTV 376


>gi|4972088|emb|CAB43884.1| putative protein [Arabidopsis thaliana]
 gi|7269233|emb|CAB81302.1| putative protein [Arabidopsis thaliana]
          Length = 364

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 138/286 (48%), Gaps = 32/286 (11%)

Query: 118 PVTAACLDSLSAL---GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
           P T + L SL  L   G+ F         ++  C  +  +    + N  F          
Sbjct: 10  PKTHSSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSF---------- 59

Query: 175 LKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLES 231
           L+ + NLE L+L S   GD+  G V   G  NLK L +SDTQ+  SG+ +L+G +  LE+
Sbjct: 60  LETMFNLEHLDLSSTAFGDDSVGFVACVG-ENLKNLNVSDTQITPSGVGNLAGHVPQLET 118

Query: 232 INLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           +++S T + D S+  ++  +  +K+L+L            + S  G  +L +      + 
Sbjct: 119 LSMSQTFVDDLSILLISTTMPCIKALDL-----------GMNSTLGFYYL-ISPQEEKEK 166

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
             A L++  +L +L +    L D  +  +  L+ LT L+L+ + +LTD TL  +S L  L
Sbjct: 167 SLAALQSLTSLETLSLEHPYLGDKALSGLSSLTGLTHLSLT-STSLTDSTLHHLSSLPNL 225

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSR 395
           VSL V +  +TS GL   +P   LR+L L+ C  +T +DI  L  R
Sbjct: 226 VSLGVRDGVLTSNGLEKFRPPNRLRTLDLQGCWLLTKDDIAGLCKR 271


>gi|290971190|ref|XP_002668408.1| predicted protein [Naegleria gruberi]
 gi|284081802|gb|EFC35664.1| predicted protein [Naegleria gruberi]
          Length = 286

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 1/159 (0%)

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           ++ +  L  L++S   +G  G +++S +  L S+N+ +  ISD   + ++ +  L  LN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
            + +I D G   ++ +  LT L++    I D GA ++   K L SL +    ++  G K+
Sbjct: 189 GSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKY 248

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
           I ++  L LLN+  N  ++D+  + IS +  L SL+ +N
Sbjct: 249 ISEMKQLILLNIGSN-RISDEGAKYISEMKQLTSLHTTN 286



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 91/171 (53%), Gaps = 2/171 (1%)

Query: 208 LELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
           +E S   +GS   ++ +S +  L S+++S   I     + ++ +  L SLN+   QI+D 
Sbjct: 113 VEFSGYLLGSRERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDK 172

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
           G   ++ +  L  L++   RI D GA Y+   K L SL +    + D G K I ++  LT
Sbjct: 173 GAKYISEMKQLILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLT 232

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
            LN+ +N  ++ +  + IS +  L+ LN+ ++RI+  G +++  +K L SL
Sbjct: 233 SLNVYKN-RISVEGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 79/160 (49%)

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
           E +  +  +  L SL++    IG EG   ++ +  L  L +   Q+   G +++S +  L
Sbjct: 124 ERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQL 183

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             +N+    I D   + ++ +  L SLN+   +I D G   ++ +  LT L+++  RI+ 
Sbjct: 184 ILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISV 243

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
            GA Y+   K L  L I    ++D G K+I ++  LT L+
Sbjct: 244 EGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLH 283



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)

Query: 271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
           ++ +  LT LD+    I   GA Y+   K L SL I    ++D G K+I ++  L LLN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188

Query: 331 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
             N  + D+  + IS +  L SLNVSN+ I   G + +  +K L SL +   +++    K
Sbjct: 189 GSN-RIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAK 247

Query: 391 RL 392
            +
Sbjct: 248 YI 249



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 77/153 (50%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
           S++  L  L++  N I  E   ++  +  L SLN+    I D+G   ++ +  L  L + 
Sbjct: 130 SEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNIG 189

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
             ++G  G +++S +  L S+N+S   I D   + ++ +  L SLN+   +I+  G   +
Sbjct: 190 SNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKYI 249

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + +  L  L++   RI+D GA Y+   K L SL
Sbjct: 250 SEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 80/158 (50%)

Query: 100 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 159
           + ++  +++LT L++    +       +S +  L  LN+   Q+SD G +  S++  L +
Sbjct: 126 VKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLIL 185

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           LN+G N I DE   ++  +  L SLN+ +  I DEG   ++ +  L  L +   ++   G
Sbjct: 186 LNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEG 245

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
            +++S +  L  +N+    ISD   + ++ +  L SL+
Sbjct: 246 AKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLH 283



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 78/158 (49%)

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           +K +S +  L SL IS + +   G  Y+  +++LT LN+    ++      +S +  L  
Sbjct: 126 VKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLIL 185

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           LN+   ++ D+G +  S++  L  LN+  NEI DE    +  +  L SLN+    I  EG
Sbjct: 186 LNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEG 245

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
              ++ +  L  L +   ++   G +++S +  L S++
Sbjct: 246 AKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLH 283



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 4/166 (2%)

Query: 23  TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 82
           + + +K  + +  L  LD+      + G   +  + +L SLNI + N I+D   K +S +
Sbjct: 122 SRERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNI-YYNQISDKGAKYISEM 180

Query: 83  TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 142
             L  L I  +++ D G  Y+  +++LT LN+    +       +S +  L  LN+ + +
Sbjct: 181 KQLILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNR 240

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTNLESLN 185
           +S +G +  S++  L +LN+G N I+DE    +  +K LT+L + N
Sbjct: 241 ISVEGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLHTTN 286



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 81/154 (52%)

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           +S +  L  L+++   +  +G +  S++  L  LN+ +N+I+D+   ++  +  L  LN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
            S  IGDEG   ++ +  L  L +S+ ++   G + +S +  L S+N+    IS    + 
Sbjct: 189 GSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKY 248

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           ++ +  L  LN+ + +I+D G   ++ +  LT L
Sbjct: 249 ISEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 1/152 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SL+I   N I     K +S +  L SL I  ++++D G  Y+  +++L LLN+  
Sbjct: 132 MKQLTSLDIS-HNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNIGS 190

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +       +S +  L  LN++  ++ D+G +  S++  L  LN+  N I+ E   ++ 
Sbjct: 191 NRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKYIS 250

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
            +  L  LN+ S  I DEG   ++ +  L  L
Sbjct: 251 EMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282


>gi|283779449|ref|YP_003370204.1| hypothetical protein Psta_1669 [Pirellula staleyi DSM 6068]
 gi|283437902|gb|ADB16344.1| hypothetical protein Psta_1669 [Pirellula staleyi DSM 6068]
          Length = 633

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 72/138 (52%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L+LG   +TD+ L  L     L+ L+L    + D GL  L  L  L  L L  T + S+ 
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
           +  ++ L NLE ++LS   I+D  L K+A L  LK L L    +TD GLA L SL  L  
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597

Query: 280 LDLFGARITDSGAAYLRN 297
           LDL G R++   A  L++
Sbjct: 598 LDLRGTRVSADAAEKLKS 615



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 4/170 (2%)

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
           +GF +++D+ L+         +L+L    + D+GL  L     LK L+LS T+V  +GL 
Sbjct: 456 VGFLDVSDQDLLACVSPATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLE 515

Query: 222 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
            L  LT L  + L  T IS  S+  +A L +L+ L+L    I D  LA + +L  L  L 
Sbjct: 516 QLDQLTQLNQLFLEGTAISSASIPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLY 575

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVK---HIKDLSSLTL 327
           L G  +TD+G A L + +NL  L++ G  ++ DA  K    IK L+++ L
Sbjct: 576 LVGTPVTDAGLAKLVSLQNLEMLDLRGTRVSADAAEKLKSRIKSLANVLL 625



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 66/118 (55%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
             +TD  +  L     LK L +S +KVTD+G+  L  L +L  L LEG  +++A + +++
Sbjct: 483 TTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSASIPAIA 542

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
            L +L  L+L++  ++DD   K + +  LKVL L    +TD  L  L  L NLE L+L
Sbjct: 543 RLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEMLDL 600



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 5/162 (3%)

Query: 236 FTGISDGSLRKLAGLSSLKSLNLD--ARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           F  +SD  L  LA +S   ++NL      +TD GLA L     L  LDL   ++TD+G  
Sbjct: 458 FLDVSDQDL--LACVSPATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLE 515

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            L     L  L + G  ++ A +  I  L +L  L+LS+  N+ D  L  I+ L  L  L
Sbjct: 516 QLDQLTQLNQLFLEGTAISSASIPAIARLRNLEELDLSK-VNIADDDLAKIATLKQLKVL 574

Query: 354 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 395
            +  + +T AGL  L  L+NL  L L   +V+A+  ++L+SR
Sbjct: 575 YLVGTPVTDAGLAKLVSLQNLEMLDLRGTRVSADAAEKLKSR 616



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           VT   L  L     L +L+L+  +++D G E+  ++  L  L L    I+   +  +  L
Sbjct: 485 VTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSASIPAIARL 544

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            NLE L+L    I D+ L  +  L  LK L L  T V  +GL  L  L NLE ++L  T 
Sbjct: 545 RNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEMLDLRGTR 604

Query: 239 ISDGSLRKLAGLSSLKSL 256
           +S  +  KL   S +KSL
Sbjct: 605 VSADAAEKLK--SRIKSL 620



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 61/123 (49%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L+L R  ++D G  +  +   LK L+L   ++TD  L  L  LT L  L L+   I    
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           +  +  L NL+ L+LS   +    L  ++ L  L+ + L  T ++D  L KL  L +L+ 
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597

Query: 256 LNL 258
           L+L
Sbjct: 598 LDL 600



 Score = 44.7 bits (104), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 26/125 (20%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E L  L+ L  L F    AI++  + A A L NL +LDL +        VN         
Sbjct: 515 EQLDQLTQLNQL-FLEGTAISSASIPAIARLRNLEELDLSK--------VN--------- 556

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
                   I D D+  ++ L  LK L +  + VTD+G+A L  LQ L +L+L G  V+A 
Sbjct: 557 --------IADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEMLDLRGTRVSAD 608

Query: 123 CLDSL 127
             + L
Sbjct: 609 AAEKL 613


>gi|223698748|gb|ACN19072.1| truncated internalin A [Listeria monocytogenes]
 gi|223698961|gb|ACN19214.1| truncated internalin A [Listeria monocytogenes]
          Length = 491

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL- 106

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 107 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 156/308 (50%), Gaps = 35/308 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L     T + + +LS L SL
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSN--TISDISALSGLTSL 103

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I D
Sbjct: 104 QQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD 158

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
             +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ L
Sbjct: 159 --ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
             L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++D
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD 268

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLKP 370
                I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L P
Sbjct: 269 -----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLTP 315

Query: 371 LKNLRSLT 378
           L NL  +T
Sbjct: 316 LANLTRIT 323


>gi|17647819|ref|NP_523812.1| partner of paired, isoform A [Drosophila melanogaster]
 gi|194884489|ref|XP_001976275.1| GG20101 [Drosophila erecta]
 gi|10441427|gb|AAG17034.1|AF187980_1 Partner of Paired [Drosophila melanogaster]
 gi|7291460|gb|AAF46886.1| partner of paired, isoform A [Drosophila melanogaster]
 gi|21430560|gb|AAM50958.1| RE01138p [Drosophila melanogaster]
 gi|190659462|gb|EDV56675.1| GG20101 [Drosophila erecta]
 gi|220947678|gb|ACL86382.1| CG9952-PA [synthetic construct]
 gi|220957060|gb|ACL91073.1| ppa-PA [synthetic construct]
          Length = 538

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 159/302 (52%), Gaps = 28/302 (9%)

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLK 158
           G+  LT LNL GC    A ++   A    L +L  L+L+ C Q++D    + ++ + +L+
Sbjct: 232 GVPALTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLE 290

Query: 159 VLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKC 207
            L LG   N      L+   GL  L+ LNL SC  I D+G+ +L G           L+ 
Sbjct: 291 TLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 350

Query: 208 LELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 263
           L L D Q +    L H++ GLT+L+SINLSF   ++D  L+ LA +  L+ LNL +   I
Sbjct: 351 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNI 410

Query: 264 TDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI- 319
           +D G+A LT   +G+  LD+ F  +I+D    ++ +    LRSL +    +TD G+  I 
Sbjct: 411 SDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIA 470

Query: 320 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSL 377
           K L  L  LN+ Q   +TDK L+ L   LT L ++++   ++++S G+  +  L  L+ L
Sbjct: 471 KALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKL 530

Query: 378 TL 379
            L
Sbjct: 531 NL 532



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 40/245 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVN--LKG 56
           GL  L  L+ R    I+ QG+   AG         + L  L L+ C R+    +    +G
Sbjct: 311 GLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQG 370

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L  L+S+N+ +C  +TDS +K L+ +  L+ L + SC  ++D G+AYL +G   +  L++
Sbjct: 371 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 430

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C  ++   L  ++  L  L  L+LN+CQ++D G  K +                    
Sbjct: 431 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIA-------------------- 470

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
              K L  LE+LN+  C  I D+GL  L   L NLK ++L   TQ+ S G+  +  L  L
Sbjct: 471 ---KALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKL 527

Query: 230 ESINL 234
           + +NL
Sbjct: 528 QKLNL 532



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 34/237 (14%)

Query: 177 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 227
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 290

Query: 228 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 278
            LE     N++ TG+    L    GL  LK LNL +   I+D G+  L   +  T     
Sbjct: 291 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 346

Query: 279 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 331
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 347 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 405

Query: 332 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 385
              N++D  +  L  G +G+ SL+VS   +I+   L H+ + L  LRSL+L  C++T
Sbjct: 406 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 462



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 7/166 (4%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESL 63
            GL++L S++     ++T  G+K  A +  L +L+L  C  I   G+  L +G   + SL
Sbjct: 369 QGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSL 428

Query: 64  NIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VT 120
           ++ +C+ I+D  +  ++ GL  L+SL ++  ++TD G+  + K L +L  LN+  C  +T
Sbjct: 429 DVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRIT 488

Query: 121 AACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 164
              L +L+  L +L  ++L  C QLS  G +   K+  L+ LNLG 
Sbjct: 489 DKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGL 534


>gi|71744514|ref|XP_803787.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|70831052|gb|EAN76557.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 490

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 186/407 (45%), Gaps = 33/407 (8%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQG--MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           EN  G+ NL  L          +G  ++      NLVKL L+ C  +   +  L  +  L
Sbjct: 97  ENFVGIKNLPQLKALEVAEAPIRGGCLQTLTAGCNLVKLCLDSCPYLKD-VSPLAEMTAL 155

Query: 61  ESLNIKWCNCI-TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT-LLNLEGCP 118
           E L I  C C+  ++ +  L  L  L+ L +  + +  +    L+GL   T LLNL  C 
Sbjct: 156 EHLAI--CKCVGIETGIGSLGKLPALRELYLIGTSMRGNS---LRGLGATTSLLNL--CI 208

Query: 119 VTAACLDS---LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
           V+  CL     ++ +  L  L L  C   ++G  K   + +L  L+L ++ I D   V L
Sbjct: 209 VSCGCLTDVLHIADVQVLRQLTLESCTSLEEGVGKLGGLPALYELDLSYSSIVD---VFL 265

Query: 176 KGLTN---LESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNL 229
           +GL++   L  LNL  C    + L +++ L  LK L+   L   +   +G+  L  L  L
Sbjct: 266 QGLSSSRSLVKLNLSWC----DQLTDVSPLAELKTLKYLNLQSCEAVVAGIGDLGKLPGL 321

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARIT 288
             ++LS T I+D +LR L    SL  L++ +   +TD  L+AL SL  L  L+L      
Sbjct: 322 YELDLSCTPITDCALRDLCSSRSLVRLDISSCDNLTD--LSALVSLKTLGELNLDACTEV 379

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
             G   +     LR L+     +TD  ++ +    SL +L L    ++TD  +  ++ + 
Sbjct: 380 KQGIGNISQLPELRRLDGTCLPITDDSLRDLSASRSLVVLCLDTCMDITD--VSCLAAVK 437

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 395
            L  +++++      G+  L  L  LRS+ L   K+ +  +  LQ+R
Sbjct: 438 TLEEISLNSCLSVEKGVEALTTLPRLRSVNLRGVKIDSEVLSELQAR 484


>gi|350417674|ref|XP_003491538.1| PREDICTED: F-box/LRR-repeat protein 14-like [Bombus impatiens]
          Length = 485

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 158/307 (51%), Gaps = 34/307 (11%)

Query: 103 LKGLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK- 153
           LKG+  L  LNL GC        + A C +      +L  LNL+ C Q+SD    +  + 
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQE----YATLIELNLSLCKQVSDISLGRIVQY 232

Query: 154 IGSLKVLNLG-FNEITDECLVHLKG-LTNLESLNLDSCG-IGDEGLVNLTGL-------- 202
           + +L+ L LG    IT+  L+ +   L  L+ L+L SC  + D G+ +L G+        
Sbjct: 233 LKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGN 292

Query: 203 CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 259
             L+ L L D Q +    LRH+S GLT L+SINLSF   I+D  L+ LA +SSL+ LNL 
Sbjct: 293 LALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLR 352

Query: 260 A-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 315
           +   I+D G+A L    + ++ LD+ F  +I D    ++ +   NL+ L +    ++D G
Sbjct: 353 SCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEG 412

Query: 316 V-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLK 372
           + K  K L  L  LN+ Q   LTDK L  I+  +  L  +++   +RI++ GL  +  L 
Sbjct: 413 ICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLP 472

Query: 373 NLRSLTL 379
            L +L L
Sbjct: 473 QLSTLNL 479



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 124/249 (49%), Gaps = 40/249 (16%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNLK-GL 57
           L  L  L  R    ++  G+   AG+        + L  L L+ C R+    L ++  GL
Sbjct: 259 LKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLALEHLSLQDCQRLSDEALRHVSIGL 318

Query: 58  MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLE 115
             L+S+N+ +C CITDS +K L+ +++L+ L + SC  ++D G+AYL +G  +++ L++ 
Sbjct: 319 TTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLAEGGSRISSLDVS 378

Query: 116 GCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
            C      A +     L +L  L+L+ CQ+SD+G  K +K                    
Sbjct: 379 FCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIAKT------------------- 419

Query: 174 HLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLE 230
               L +LE+LN+  C  + D+GL  +   + +LKC++L   T++ ++GL  +  L  L 
Sbjct: 420 ----LHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLS 475

Query: 231 SINLSFTGI 239
           ++NL    +
Sbjct: 476 TLNLGLWHV 484



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 154/319 (48%), Gaps = 62/319 (19%)

Query: 54  LKGLMKLESLNIKWCNCITD-------------------------SDM---KPLSGLTNL 85
           LKG+  LE+LN+  C  ITD                         SD+   + +  L NL
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNL 236

Query: 86  KSLQI-SCSKVTDSG---IAYLKGLQKLTLLNLEGCPVTA-------ACLDSLSALG--S 132
           + L++  C  +T+ G   IA+   L+KL  L+L  C   +       A ++  SA G  +
Sbjct: 237 EHLELGGCCNITNGGLLCIAW--NLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLA 294

Query: 133 LFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC 189
           L +L+L  CQ   D   +   IG  +LK +NL F   ITD  L HL  +++L  LNL SC
Sbjct: 295 LEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC 354

Query: 190 -GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSLR 245
             I D G+  L  G   +  L++S   ++G   L H+S GL NL+ ++LS   ISD  + 
Sbjct: 355 DNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGIC 414

Query: 246 KLAG-LSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNL 301
           K+A  L  L++LN+    ++TD GL  +  S+  L  +DL+G  RI+ +G   +     L
Sbjct: 415 KIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQL 474

Query: 302 RSLEICGGGLTDAGVKHIK 320
            +L +        G+ H++
Sbjct: 475 STLNL--------GLWHVR 485



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 40/249 (16%)

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVNLTGLC---------NLK-CLELSDTQVGSSGLRHL 223
           LKG+ NLE+LNL  C  I D GL+N    C         NL  C ++SD  +G    R +
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLIN--AFCQEYATLIELNLSLCKQVSDISLG----RIV 230

Query: 224 SGLTNLESINLS-FTGISDGSLRKLAG-LSSLKSLNLDA-RQITDTGLAALTSLT----- 275
             L NLE + L     I++G L  +A  L  LK L+L +  Q++D G+A L  +      
Sbjct: 231 QYLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAG 290

Query: 276 ---GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLT 326
               L HL L    R++D    ++      L+S+     +C   +TD+G+KH+  +SSL 
Sbjct: 291 GNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLR 347

Query: 327 LLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCK 383
            LNL    N++D  +  L  G + + SL+VS   +I    L H+ + L NL+ L+L +C+
Sbjct: 348 ELNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQ 407

Query: 384 VTANDIKRL 392
           ++   I ++
Sbjct: 408 ISDEGICKI 416



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 7/168 (4%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLN 64
           GL+ L S++      IT  G+K  A + +L +L+L  C  I   G+  L +G  ++ SL+
Sbjct: 317 GLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLAEGGSRISSLD 376

Query: 65  IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTA 121
           + +C+ I D  +  +S GL NLK L +S  +++D GI  + K L  L  LN+  C  +T 
Sbjct: 377 VSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTD 436

Query: 122 ACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEI 167
             L +++ ++  L  ++L  C ++S +G E+  K+  L  LNLG   +
Sbjct: 437 KGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNLGLWHV 484


>gi|168700133|ref|ZP_02732410.1| hypothetical protein GobsU_11435 [Gemmata obscuriglobus UQM 2246]
          Length = 167

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 3/159 (1%)

Query: 241 DGSLRKLAGLSS-LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           D  +++LA L+  L +LNL   ++TD G+  L +L  LT+LDL G  +TD+G   L   K
Sbjct: 5   DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
            L  LE+    +TDAGVK +  L +L  L+L     +TD   + +SGL  LV+L++SN++
Sbjct: 65  GLTRLELRSTKITDAGVKELAALKNLNHLDLG-GTKVTDAGAKELSGLNFLVTLDLSNTQ 123

Query: 360 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 398
           +T AG++ L  L  L +L L    VT   +K L +  LP
Sbjct: 124 VTDAGVKALTALTGLTTLDLHGTGVTDAGLKELNAA-LP 161



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 73/126 (57%), Gaps = 1/126 (0%)

Query: 193 DEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
           D G+  L  L   L  L L  T+V   G++ L+ L  L +++L  TG++D  +++L+GL 
Sbjct: 5   DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L + +ITD G+  L +L  L HLDL G ++TD+GA  L     L +L++    +
Sbjct: 65  GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124

Query: 312 TDAGVK 317
           TDAGVK
Sbjct: 125 TDAGVK 130



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 1/148 (0%)

Query: 145 DDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 203
           D G ++ + +   L  LNL    +TD  +  L  L  L +L+L   G+ D G+  L+GL 
Sbjct: 5   DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
            L  LEL  T++  +G++ L+ L NL  ++L  T ++D   ++L+GL+ L +L+L   Q+
Sbjct: 65  GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSG 291
           TD G+ ALT+LTGLT LDL G  +TD+G
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAG 152



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 3/144 (2%)

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
           KGLT   +LNL    + D G+  L  L  L  L+L  T V  +G++ LSGL  L  + L 
Sbjct: 16  KGLT---TLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKGLTRLELR 72

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
            T I+D  +++LA L +L  L+L   ++TD G   L+ L  L  LDL   ++TD+G   L
Sbjct: 73  STKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKAL 132

Query: 296 RNFKNLRSLEICGGGLTDAGVKHI 319
                L +L++ G G+TDAG+K +
Sbjct: 133 TALTGLTTLDLHGTGVTDAGLKEL 156



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 1/153 (0%)

Query: 122 ACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
           A +  L+AL   L  LNL R +++D G ++ + + +L  L+LG   +TD  +  L GL  
Sbjct: 6   AGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKG 65

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  L L S  I D G+  L  L NL  L+L  T+V  +G + LSGL  L +++LS T ++
Sbjct: 66  LTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVT 125

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
           D  ++ L  L+ L +L+L    +TD GL  L +
Sbjct: 126 DAGVKALTALTGLTTLDLHGTGVTDAGLKELNA 158



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 97  DSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 155
           D+G+  L  L K LT LNL    VT   +  L+AL +L  L+L    ++D G ++ S + 
Sbjct: 5   DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
            L  L L   +ITD  +  L  L NL  L+L    + D G   L+GL  L  L+LS+TQV
Sbjct: 65  GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
             +G++ L+ LT L +++L  TG++D  L++L
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAGLKEL 156



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 1/140 (0%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L +LN++    +TD  +K L+ L  L +L +  + VTD+G+  L GL+ LT L L    +
Sbjct: 18  LTTLNLRRTR-VTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKGLTRLELRSTKI 76

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
           T A +  L+AL +L +L+L   +++D G ++ S +  L  L+L   ++TD  +  L  LT
Sbjct: 77  TDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKALTALT 136

Query: 180 NLESLNLDSCGIGDEGLVNL 199
            L +L+L   G+ D GL  L
Sbjct: 137 GLTTLDLHGTGVTDAGLKEL 156



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 2/142 (1%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 70
           LT+L+ RR   +T  G+K  A L  L  LDL        G+  L GL  L  L ++    
Sbjct: 18  LTTLNLRRTR-VTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKGLTRLELRSTK- 75

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           ITD+ +K L+ L NL  L +  +KVTD+G   L GL  L  L+L    VT A + +L+AL
Sbjct: 76  ITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKALTAL 135

Query: 131 GSLFYLNLNRCQLSDDGCEKFS 152
             L  L+L+   ++D G ++ +
Sbjct: 136 TGLTTLDLHGTGVTDAGLKELN 157



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 4/128 (3%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLE 61
           + L+ L  LT+L       +T  G+K  +GL  L +L+L R T+I   G+  L  L  L 
Sbjct: 34  KELAALKALTNLDLG-GTGVTDAGVKELSGLKGLTRLEL-RSTKITDAGVKELAALKNLN 91

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            L++     +TD+  K LSGL  L +L +S ++VTD+G+  L  L  LT L+L G  VT 
Sbjct: 92  HLDLGGTK-VTDAGAKELSGLNFLVTLDLSNTQVTDAGVKALTALTGLTTLDLHGTGVTD 150

Query: 122 ACLDSLSA 129
           A L  L+A
Sbjct: 151 AGLKELNA 158


>gi|145687803|gb|ABP88874.1| truncated internalin A precursor [Listeria monocytogenes]
 gi|145687809|gb|ABP88877.1| truncated internalin A precursor [Listeria monocytogenes]
 gi|194326155|emb|CAQ77236.1| internalin A [Listeria monocytogenes]
 gi|294358379|gb|ADE73842.1| truncated InlA [Listeria monocytogenes]
 gi|294358381|gb|ADE73843.1| truncated InlA [Listeria monocytogenes]
 gi|294358383|gb|ADE73844.1| truncated InlA [Listeria monocytogenes]
 gi|294358385|gb|ADE73845.1| truncated InlA [Listeria monocytogenes]
 gi|298359890|gb|ADI77524.1| truncated internalin A [Listeria monocytogenes]
 gi|298359938|gb|ADI77548.1| truncated internalin A [Listeria monocytogenes]
 gi|298359960|gb|ADI77559.1| truncated internalin A [Listeria monocytogenes]
 gi|298360012|gb|ADI77585.1| truncated internalin A [Listeria monocytogenes]
 gi|371942072|gb|AEX60848.1| truncated internaline [Listeria monocytogenes]
 gi|371942094|gb|AEX60859.1| truncated internaline [Listeria monocytogenes]
 gi|371942120|gb|AEX60872.1| truncated internaline [Listeria monocytogenes]
 gi|371942130|gb|AEX60877.1| truncated internaline [Listeria monocytogenes]
          Length = 491

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL- 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|219821312|gb|ACL37786.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 160/322 (49%), Gaps = 33/322 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             +  ++ L+ L+ L     +++D  +++L SLT +  L     +I+D     L N   +
Sbjct: 296 --ISPVSSLTKLQRLFFYNNKVSD--VSSLASLTNINWLSAGHNQISD--LTPLANLTRI 349

Query: 302 RSLEICGGGLTDAGVKHIKDLS 323
             L +     T+A V +  ++S
Sbjct: 350 TQLGLNDQAWTNAPVNYKANVS 371



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLASLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|22347570|gb|AAM95930.1| internalin A precursor [Listeria monocytogenes]
          Length = 744

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 160/322 (49%), Gaps = 33/322 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 82  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 136

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 137 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 185

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 186 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 241

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 242 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 297

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             +  ++ L+ L+ L     +++D  +++L SLT +  L     +I+D     L N   +
Sbjct: 298 --ISPVSSLTKLQRLFFYNNKVSD--VSSLASLTNINWLSAGHNQISD--LTPLANLTRI 351

Query: 302 RSLEICGGGLTDAGVKHIKDLS 323
             L +     T+A V +  ++S
Sbjct: 352 TQLGLNDQAWTNAPVNYKANVS 373



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 184/385 (47%), Gaps = 66/385 (17%)

Query: 27  MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD---- 73
           MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD    
Sbjct: 1   MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPL 60

Query: 74  ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEG 116
                           +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE 
Sbjct: 61  KDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLEL 115

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L 
Sbjct: 116 SSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LA 170

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+ 
Sbjct: 171 KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLAN 226

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + 
Sbjct: 227 NQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPIS 280

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N  
Sbjct: 281 NLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLASLTNIN-- 330

Query: 357 NSRITSAG---LRHLKPLKNLRSLT 378
                SAG   +  L PL NL  +T
Sbjct: 331 ---WLSAGHNQISDLTPLANLTRIT 352


>gi|371942108|gb|AEX60866.1| truncated internaline [Listeria monocytogenes]
          Length = 491

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL- 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|340728038|ref|XP_003402339.1| PREDICTED: f-box/LRR-repeat protein 14-like [Bombus terrestris]
          Length = 485

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 158/307 (51%), Gaps = 34/307 (11%)

Query: 103 LKGLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK- 153
           LKG+  L  LNL GC        + A C +      +L  LNL+ C Q+SD    +  + 
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQE----YATLIELNLSLCKQVSDISLGRIVQY 232

Query: 154 IGSLKVLNLG-FNEITDECLVHLKG-LTNLESLNLDSCG-IGDEGLVNLTGL-------- 202
           + +L+ L LG    IT+  L+ +   L  L+ L+L SC  + D G+ +L G+        
Sbjct: 233 LKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGN 292

Query: 203 CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 259
             L+ L L D Q +    LRH+S GLT L+SINLSF   I+D  L+ LA +SSL+ LNL 
Sbjct: 293 LALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLR 352

Query: 260 A-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 315
           +   I+D G+A L    + ++ LD+ F  +I D    ++ +   NL+ L +    ++D G
Sbjct: 353 SCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEG 412

Query: 316 V-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLK 372
           + K  K L  L  LN+ Q   LTDK L  I+  +  L  +++   +RI++ GL  +  L 
Sbjct: 413 ICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLP 472

Query: 373 NLRSLTL 379
            L +L L
Sbjct: 473 QLSTLNL 479



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 124/249 (49%), Gaps = 40/249 (16%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNLK-GL 57
           L  L  L  R    ++  G+   AG+        + L  L L+ C R+    L ++  GL
Sbjct: 259 LKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLALEHLSLQDCQRLSDEALRHVSIGL 318

Query: 58  MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLE 115
             L+S+N+ +C CITDS +K L+ +++L+ L + SC  ++D G+AYL +G  +++ L++ 
Sbjct: 319 TTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLAEGGSRISSLDVS 378

Query: 116 GCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
            C      A +     L +L  L+L+ CQ+SD+G  K +K                    
Sbjct: 379 FCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIAKT------------------- 419

Query: 174 HLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLE 230
               L +LE+LN+  C  + D+GL  +   + +LKC++L   T++ ++GL  +  L  L 
Sbjct: 420 ----LHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLS 475

Query: 231 SINLSFTGI 239
           ++NL    +
Sbjct: 476 TLNLGLWHV 484



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 154/319 (48%), Gaps = 62/319 (19%)

Query: 54  LKGLMKLESLNIKWCNCITD-------------------------SDM---KPLSGLTNL 85
           LKG+  LE+LN+  C  ITD                         SD+   + +  L NL
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNL 236

Query: 86  KSLQI-SCSKVTDSG---IAYLKGLQKLTLLNLEGCPVTA-------ACLDSLSALG--S 132
           + L++  C  +T+ G   IA+   L+KL  L+L  C   +       A ++  SA G  +
Sbjct: 237 EHLELGGCCNITNGGLLCIAW--NLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLA 294

Query: 133 LFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC 189
           L +L+L  CQ   D   +   IG  +LK +NL F   ITD  L HL  +++L  LNL SC
Sbjct: 295 LEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC 354

Query: 190 -GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSLR 245
             I D G+  L  G   +  L++S   ++G   L H+S GL NL+ ++LS   ISD  + 
Sbjct: 355 DNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGIC 414

Query: 246 KLAG-LSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNL 301
           K+A  L  L++LN+    ++TD GL  +  S+  L  +DL+G  RI+ +G   +     L
Sbjct: 415 KIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQL 474

Query: 302 RSLEICGGGLTDAGVKHIK 320
            +L +        G+ H++
Sbjct: 475 STLNL--------GLWHVR 485



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 40/249 (16%)

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVNLTGLC---------NLK-CLELSDTQVGSSGLRHL 223
           LKG+ NLE+LNL  C  I D GL+N    C         NL  C ++SD  +G    R +
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLIN--AFCQEYATLIELNLSLCKQVSDISLG----RIV 230

Query: 224 SGLTNLESINLS-FTGISDGSLRKLAG-LSSLKSLNLDA-RQITDTGLAALTSLT----- 275
             L NLE + L     I++G L  +A  L  LK L+L +  Q++D G+A L  +      
Sbjct: 231 QYLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAG 290

Query: 276 ---GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLT 326
               L HL L    R++D    ++      L+S+     +C   +TD+G+KH+  +SSL 
Sbjct: 291 GNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLR 347

Query: 327 LLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCK 383
            LNL    N++D  +  L  G + + SL+VS   +I    L H+ + L NL+ L+L +C+
Sbjct: 348 ELNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQ 407

Query: 384 VTANDIKRL 392
           ++   I ++
Sbjct: 408 ISDEGICKI 416



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 7/168 (4%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLN 64
           GL+ L S++      IT  G+K  A + +L +L+L  C  I   G+  L +G  ++ SL+
Sbjct: 317 GLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLAEGGSRISSLD 376

Query: 65  IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTA 121
           + +C+ I D  +  +S GL NLK L +S  +++D GI  + K L  L  LN+  C  +T 
Sbjct: 377 VSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTD 436

Query: 122 ACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEI 167
             L +++ ++  L  ++L  C ++S +G E+  K+  L  LNLG   +
Sbjct: 437 KGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNLGLWHV 484


>gi|441473145|emb|CCQ22899.1| Internalin-A [Listeria monocytogenes N53-1]
          Length = 455

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 159/340 (46%), Gaps = 55/340 (16%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL- 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAG 315
           L     T++   Y  N       KN+    I    ++D G
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGG 451



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|328698260|ref|XP_001948969.2| PREDICTED: leucine-rich repeats and immunoglobulin-like domains
           protein 1-like [Acyrthosiphon pisum]
          Length = 537

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 145/321 (45%), Gaps = 9/321 (2%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA---ACLD 125
           N I D + K L+ LT L++L +S + + +        L KL LL L+   +        +
Sbjct: 77  NKIRDIEPKSLTHLTELETLILSHNIIREMKNGAFANLSKLRLLYLDANEIENIENGVFN 136

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           +L+ L  L YLN N+    D     F  +  LK L+L  N+I D     L  LT LE L 
Sbjct: 137 NLTTLEKL-YLNYNKIHKLDSDI--FIGLTKLKTLDLSNNKIRDIEPKSLTHLTELEILI 193

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           L +  I D  +   T L  L+ L L   ++ +      + LT+LE++ L+F  I      
Sbjct: 194 LSNNKISDVKIGVFTNLSKLRLLYLDLNEIENIETGVFNNLTSLENLYLNFNNIHKLDSE 253

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
              GL+ L +L L   +I D     L++LT L  L L   +I+D       N  NLR+L 
Sbjct: 254 MFIGLTKLNTLYLSYNKIRDIVPKLLSNLTELKVLSLSNNKISDVKIGAFTNLSNLRTLS 313

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQN-CNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           +    + +       +L+SL  L L  N  +  D   E+  GLT L  L++ N+ I +  
Sbjct: 314 LNENKIENLETGVFNNLTSLENLYLDYNRIHYLDS--EMFKGLTKLNELHLHNNMIRNIP 371

Query: 365 LRHLKPLKNLRSLTLESCKVT 385
                 L +L +LTL +  +T
Sbjct: 372 RGIFDSLTSLGNLTLRNVPLT 392



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 136/322 (42%), Gaps = 32/322 (9%)

Query: 19  NNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 76
           +N I      AFA L  + L+ LD      I  G+ N   L  LE L + + N I   D 
Sbjct: 100 HNIIREMKNGAFANLSKLRLLYLDANEIENIENGVFN--NLTTLEKLYLNY-NKIHKLDS 156

Query: 77  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
               GLT LK+L +S +K+ D                +E          SL+ L  L  L
Sbjct: 157 DIFIGLTKLKTLDLSNNKIRD----------------IEP--------KSLTHLTELEIL 192

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
            L+  ++SD     F+ +  L++L L  NEI +        LT+LE+L L+   I     
Sbjct: 193 ILSNNKISDVKIGVFTNLSKLRLLYLDLNEIENIETGVFNNLTSLENLYLNFNNIHKLDS 252

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
               GL  L  L LS  ++     + LS LT L+ ++LS   ISD  +     LS+L++L
Sbjct: 253 EMFIGLTKLNTLYLSYNKIRDIVPKLLSNLTELKVLSLSNNKISDVKIGAFTNLSNLRTL 312

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG- 315
           +L+  +I +       +LT L +L L   RI    +   +    L  L +    + +   
Sbjct: 313 SLNENKIENLETGVFNNLTSLENLYLDYNRIHYLDSEMFKGLTKLNELHLHNNMIRNIPR 372

Query: 316 --VKHIKDLSSLTLLNLSQNCN 335
                +  L +LTL N+   C+
Sbjct: 373 GIFDSLTSLGNLTLRNVPLTCD 394


>gi|313485040|gb|ADR52996.1| InlA [Listeria monocytogenes]
          Length = 491

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL- 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|219821363|gb|ACL37820.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DINPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----INPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 341 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 376


>gi|242004502|ref|XP_002423122.1| fbxl14, putative [Pediculus humanus corporis]
 gi|212506068|gb|EEB10384.1| fbxl14, putative [Pediculus humanus corporis]
          Length = 461

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 167/349 (47%), Gaps = 69/349 (19%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 109
           ++G+  L+SLN+  C  +TD  +    ++ L  L  L +S C +VTD+ +  + + L  L
Sbjct: 153 VQGIPNLDSLNLSGCYNVTDIGLSHAFVTTLPTLTELNLSLCKQVTDTSLGRIAQYLTNL 212

Query: 110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            +L L GC                       C +++ G           +L +G+     
Sbjct: 213 EVLELGGC-----------------------CNVTNTG-----------LLLVGW----- 233

Query: 170 ECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL--------CNLKCLELSDTQ-VGSSG 219
                  GL  L+ LNL SC  I D+G+ +L G           L+ L L D Q +    
Sbjct: 234 -------GLKKLKRLNLRSCWHISDQGISHLAGPNPDVGDGNPALEYLGLQDCQRLSDEA 286

Query: 220 LRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LT 275
           LRH+S GLT L+SINLSF   I+D  L+ LA ++SL+ LNL A   I+D G+A L    +
Sbjct: 287 LRHVSVGLTGLKSINLSFCVSITDSGLKYLAKMTSLRELNLRACDNISDLGMAYLAEGGS 346

Query: 276 GLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIK-DLSSLTLLNLSQ 332
            ++ LD+ F  +I D    ++ +   +L+SL +    ++D G+  I   L  L  LN+ Q
Sbjct: 347 RISSLDVSFCDKIGDQALLHVSQGLFHLKSLSLNACNISDDGIVRIAITLHDLETLNIGQ 406

Query: 333 NCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
              +TD+ +  ++  L  L  +++   S+IT+ GL  +  L  L +L L
Sbjct: 407 CWKITDRGVHTIVDSLKHLRCIDLYGCSKITTVGLERIMKLPQLTTLNL 455



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 40/250 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNLK-G 56
           GL  L  L+ R    I+ QG+   AG           L  L L+ C R+    L ++  G
Sbjct: 234 GLKKLKRLNLRSCWHISDQGISHLAGPNPDVGDGNPALEYLGLQDCQRLSDEALRHVSVG 293

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L  L+S+N+ +C  ITDS +K L+ +T+L+ L + +C  ++D G+AYL +G  +++ L++
Sbjct: 294 LTGLKSINLSFCVSITDSGLKYLAKMTSLRELNLRACDNISDLGMAYLAEGGSRISSLDV 353

Query: 115 EGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C      A L     L  L  L+LN C +SDDG  + +              IT    
Sbjct: 354 SFCDKIGDQALLHVSQGLFHLKSLSLNACNISDDGIVRIA--------------IT---- 395

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
                L +LE+LN+  C  I D G+  +   L +L+C++L   +++ + GL  +  L  L
Sbjct: 396 -----LHDLETLNIGQCWKITDRGVHTIVDSLKHLRCIDLYGCSKITTVGLERIMKLPQL 450

Query: 230 ESINLSFTGI 239
            ++NL    +
Sbjct: 451 TTLNLGLWHV 460



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 122/249 (48%), Gaps = 40/249 (16%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ NL+SLNL  C      G+    +  L  L  L    C +++DT +G    R    
Sbjct: 153 VQGIPNLDSLNLSGCYNVTDIGLSHAFVTTLPTLTELNLSLCKQVTDTSLG----RIAQY 208

Query: 226 LTNLESI------NLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--- 275
           LTNLE +      N++ TG+    L    GL  LK LNL +   I+D G++ L       
Sbjct: 209 LTNLEVLELGGCCNVTNTGL----LLVGWGLKKLKRLNLRSCWHISDQGISHLAGPNPDV 264

Query: 276 --GLTHLDLFG----ARITDSGAAYLR-NFKNLRS--LEICGGGLTDAGVKHIKDLSSLT 326
             G   L+  G     R++D    ++      L+S  L  C   +TD+G+K++  ++SL 
Sbjct: 265 GDGNPALEYLGLQDCQRLSDEALRHVSVGLTGLKSINLSFCVS-ITDSGLKYLAKMTSLR 323

Query: 327 LLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCK 383
            LNL    N++D  +  L  G + + SL+VS   +I    L H+ + L +L+SL+L +C 
Sbjct: 324 ELNLRACDNISDLGMAYLAEGGSRISSLDVSFCDKIGDQALLHVSQGLFHLKSLSLNACN 383

Query: 384 VTANDIKRL 392
           ++ + I R+
Sbjct: 384 ISDDGIVRI 392


>gi|290997085|ref|XP_002681112.1| predicted protein [Naegleria gruberi]
 gi|284094735|gb|EFC48368.1| predicted protein [Naegleria gruberi]
          Length = 142

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 73/132 (55%)

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           +  L  L + + ++G  G +++S +  L S+++ +  I D  ++ ++ +  L SLN+   
Sbjct: 1   MKQLSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNN 60

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           +I D G+  ++ +  LT L++   RI+  G  Y+   K L SL+I    + D GVK+I +
Sbjct: 61  EIGDEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISE 120

Query: 322 LSSLTLLNLSQN 333
           +  L+ LN+S N
Sbjct: 121 MKQLSSLNISYN 132



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 74/128 (57%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           LN+   ++  +G +  S++  L  +++ +NEI DE + ++  +  L SLN+ +  IGDEG
Sbjct: 7   LNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNNEIGDEG 66

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           +  ++ +  L  L + D ++   G++++S +  L S+++S+  I D  ++ ++ +  L S
Sbjct: 67  VKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISEMKQLSS 126

Query: 256 LNLDARQI 263
           LN+   +I
Sbjct: 127 LNISYNEI 134



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 68/130 (52%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L SLN+ +  IG EG   ++ +  L  +++   ++G  G++++S +  L S+N+   
Sbjct: 1   MKQLSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNN 60

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I D  ++ ++ +  L SLN+   +I+  G+  ++ +  LT LD+    I D G  Y+  
Sbjct: 61  EIGDEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISE 120

Query: 298 FKNLRSLEIC 307
            K L SL I 
Sbjct: 121 MKQLSSLNIS 130



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           + ++ +  L S+++   +I D G+  ++ +  L+ L+++   I D G  Y+   K L SL
Sbjct: 20  KYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNNEIGDEGVKYISEMKQLTSL 79

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
            I    ++  GVK+I ++  LT L++S N  + D+ ++ IS +  L SLN+S + I
Sbjct: 80  NIPDNRISVEGVKYISEMKQLTSLDISYN-EIGDEGVKYISEMKQLSSLNISYNEI 134



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 73/135 (54%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           +++L+ LN+    +       +S +  L  +++   ++ D+G +  S++  L  LN+  N
Sbjct: 1   MKQLSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNN 60

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           EI DE + ++  +  L SLN+    I  EG+  ++ +  L  L++S  ++G  G++++S 
Sbjct: 61  EIGDEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISE 120

Query: 226 LTNLESINLSFTGIS 240
           +  L S+N+S+  I 
Sbjct: 121 MKQLSSLNISYNEIE 135



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 64/111 (57%), Gaps = 1/111 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L S++I + N I D  +K +S +  L SL +  +++ D G+ Y+  +++LT LN+  
Sbjct: 25  MQQLTSVDI-YYNEIGDEGVKYISEMKQLSSLNVYNNEIGDEGVKYISEMKQLTSLNIPD 83

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
             ++   +  +S +  L  L+++  ++ D+G +  S++  L  LN+ +NEI
Sbjct: 84  NRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISEMKQLSSLNISYNEI 134



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 69/126 (54%)

Query: 157 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
           L  LN+  NEI  E   ++  +  L S+++    IGDEG+  ++ +  L  L + + ++G
Sbjct: 4   LSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNNEIG 63

Query: 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276
             G++++S +  L S+N+    IS   ++ ++ +  L SL++   +I D G+  ++ +  
Sbjct: 64  DEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISEMKQ 123

Query: 277 LTHLDL 282
           L+ L++
Sbjct: 124 LSSLNI 129



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 71/130 (54%), Gaps = 1/130 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SLN+ + N I     K +S +  L S+ I  +++ D G+ Y+  +++L+ LN+  
Sbjct: 1   MKQLSSLNV-YNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYN 59

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +    +  +S +  L  LN+   ++S +G +  S++  L  L++ +NEI DE + ++ 
Sbjct: 60  NEIGDEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYIS 119

Query: 177 GLTNLESLNL 186
            +  L SLN+
Sbjct: 120 EMKQLSSLNI 129


>gi|217965469|ref|YP_002351147.1| internalin-A [Listeria monocytogenes HCC23]
 gi|386007166|ref|YP_005925444.1| internalin A [Listeria monocytogenes L99]
 gi|386025755|ref|YP_005946531.1| internalin A [Listeria monocytogenes M7]
 gi|167861970|gb|ACA05684.1| InlA [Listeria monocytogenes]
 gi|167861982|gb|ACA05690.1| InlA [Listeria monocytogenes]
 gi|217334739|gb|ACK40533.1| internalin-A [Listeria monocytogenes HCC23]
 gi|307569976|emb|CAR83155.1| internalin A [Listeria monocytogenes L99]
 gi|336022336|gb|AEH91473.1| internalin A [Listeria monocytogenes M7]
          Length = 800

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 160/322 (49%), Gaps = 33/322 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             +  ++ L+ L+ L     +++D  +++L SLT +  L     +I+D     L N   +
Sbjct: 354 --ISPVSSLTKLQRLFFYNNKVSD--VSSLASLTNINWLSAGHNQISD--LTPLANLTRI 407

Query: 302 RSLEICGGGLTDAGVKHIKDLS 323
             L +     T+A V +  ++S
Sbjct: 408 TQLGLNDQAWTNAPVNYKANVS 429



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 185/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLASLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|442624469|ref|NP_001261138.1| partner of paired, isoform B [Drosophila melanogaster]
 gi|440214583|gb|AGB93669.1| partner of paired, isoform B [Drosophila melanogaster]
          Length = 562

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 159/302 (52%), Gaps = 28/302 (9%)

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLK 158
           G+  LT LNL GC    A ++   A    L +L  L+L+ C Q++D    + ++ + +L+
Sbjct: 232 GVPALTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLE 290

Query: 159 VLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKC 207
            L LG   N      L+   GL  L+ LNL SC  I D+G+ +L G           L+ 
Sbjct: 291 TLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 350

Query: 208 LELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 263
           L L D Q +    L H++ GLT+L+SINLSF   ++D  L+ LA +  L+ LNL +   I
Sbjct: 351 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNI 410

Query: 264 TDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI- 319
           +D G+A LT   +G+  LD+ F  +I+D    ++ +    LRSL +    +TD G+  I 
Sbjct: 411 SDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIA 470

Query: 320 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSL 377
           K L  L  LN+ Q   +TDK L+ L   LT L ++++   ++++S G+  +  L  L+ L
Sbjct: 471 KALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKL 530

Query: 378 TL 379
            L
Sbjct: 531 NL 532



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 40/245 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVN--LKG 56
           GL  L  L+ R    I+ QG+   AG         + L  L L+ C R+    +    +G
Sbjct: 311 GLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQG 370

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L  L+S+N+ +C  +TDS +K L+ +  L+ L + SC  ++D G+AYL +G   +  L++
Sbjct: 371 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 430

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C  ++   L  ++  L  L  L+LN+CQ++D G  K +                    
Sbjct: 431 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIA-------------------- 470

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
              K L  LE+LN+  C  I D+GL  L   L NLK ++L   TQ+ S G+  +  L  L
Sbjct: 471 ---KALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKL 527

Query: 230 ESINL 234
           + +NL
Sbjct: 528 QKLNL 532



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 34/237 (14%)

Query: 177 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 227
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 290

Query: 228 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 278
            LE     N++ TG+    L    GL  LK LNL +   I+D G+  L   +  T     
Sbjct: 291 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 346

Query: 279 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 331
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 347 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 405

Query: 332 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 385
              N++D  +  L  G +G+ SL+VS   +I+   L H+ + L  LRSL+L  C++T
Sbjct: 406 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 462



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 95/176 (53%), Gaps = 8/176 (4%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESL 63
            GL++L S++     ++T  G+K  A +  L +L+L  C  I   G+  L +G   + SL
Sbjct: 369 QGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSL 428

Query: 64  NIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VT 120
           ++ +C+ I+D  +  ++ GL  L+SL ++  ++TD G+  + K L +L  LN+  C  +T
Sbjct: 429 DVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRIT 488

Query: 121 AACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
              L +L+  L +L  ++L  C QLS  G +   K+  L+ LNLG   +   C+ H
Sbjct: 489 DKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGL-WLVRXCVHH 543


>gi|112961610|gb|ABI28426.1| internalin A [Listeria monocytogenes]
 gi|112961613|gb|ABI28428.1| internalin A [Listeria monocytogenes]
 gi|112961625|gb|ABI28436.1| internalin A [Listeria monocytogenes]
 gi|112961628|gb|ABI28438.1| internalin A [Listeria monocytogenes]
 gi|112961631|gb|ABI28440.1| internalin A [Listeria monocytogenes]
 gi|112961634|gb|ABI28442.1| internalin A [Listeria monocytogenes]
 gi|112961670|gb|ABI28466.1| internalin A [Listeria monocytogenes]
 gi|112961673|gb|ABI28468.1| internalin A [Listeria monocytogenes]
 gi|112961676|gb|ABI28470.1| internalin A [Listeria monocytogenes]
 gi|112961688|gb|ABI28478.1| internalin A [Listeria monocytogenes]
 gi|112961703|gb|ABI28488.1| internalin A [Listeria monocytogenes]
 gi|112961712|gb|ABI28494.1| internalin A [Listeria monocytogenes]
 gi|112961715|gb|ABI28496.1| internalin A [Listeria monocytogenes]
 gi|112961724|gb|ABI28502.1| internalin A [Listeria monocytogenes]
 gi|112961733|gb|ABI28508.1| internalin A [Listeria monocytogenes]
 gi|112961736|gb|ABI28510.1| internalin A [Listeria monocytogenes]
 gi|112961739|gb|ABI28512.1| internalin A [Listeria monocytogenes]
 gi|112961742|gb|ABI28514.1| internalin A [Listeria monocytogenes]
 gi|112961745|gb|ABI28516.1| internalin A [Listeria monocytogenes]
 gi|112961754|gb|ABI28522.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 89  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 143

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 144 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 192

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 193 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 248

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 249 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 304

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 305 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 362

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 363 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 5   AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 64

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 65  TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 119

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 120 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 175

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 176 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 230

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 231 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 284

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 285 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 336

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 337 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 385


>gi|290982306|ref|XP_002673871.1| LRR_RI domain-containing protein [Naegleria gruberi]
 gi|284087458|gb|EFC41127.1| LRR_RI domain-containing protein [Naegleria gruberi]
          Length = 529

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 170/330 (51%), Gaps = 9/330 (2%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA--CLDSLSA-LGSLFYLNL 138
           + NL  L I  S + DSG+A L  L++L +LN+    +T+    ++ +S  +  L  L++
Sbjct: 102 MPNLIHLDIYGSDIEDSGVACLCKLKELKILNIGSNKLTSKGRGIEMISKFMKCLTNLDI 161

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           +   L + G ++  K+  L  LN+ + +I    +  ++ +T L  LN+    I  +G + 
Sbjct: 162 SFNSLGNSGMKQL-KLDKLTDLNVSYCDIDATGIQFIRNMTCLIKLNISGNNINCKGALL 220

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L+ L NL+ L+++   +   G +H+S + NL+ +++S   I +G  + ++ LS L+ L++
Sbjct: 221 LSNLKNLQELDIASACLKEEGAKHISRMDNLKFLSISHNQILNGGAKAISSLSKLEILHI 280

Query: 259 DARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
               I   GL  ++ +L  LT +D+ G      G   + +  NL+ L I    L   GV+
Sbjct: 281 SNCDIGCEGLQYISKNLKNLTEIDIGGNHFGMDGVIVIASMNNLKVLSIAESCLGLLGVQ 340

Query: 318 HIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
           ++  + +LT LN+S   N+ D  + E I+ L  L +L  +N+ ++      +  L  L +
Sbjct: 341 YLSKMENLTYLNISD--NIDDIFIGESINDLQNLTTLLYTNNSLSMDEAITISSLTQLTT 398

Query: 377 LTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           L +ES +++   I+ L S  L +L++   +
Sbjct: 399 LNIESTEISDVHIEILCSS-LHHLINLYAD 427



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 172/387 (44%), Gaps = 80/387 (20%)

Query: 50  GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
           G+  +   MK L +L+I + N + +S MK L  L  L  L +S   +  +GI +++ +  
Sbjct: 145 GIEMISKFMKCLTNLDISF-NSLGNSGMKQLK-LDKLTDLNVSYCDIDATGIQFIRNMTC 202

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L  LN+ G  +       LS L +L  L++    L ++G +  S++ +LK L++  N+I 
Sbjct: 203 LIKLNISGNNINCKGALLLSNLKNLQELDIASACLKEEGAKHISRMDNLKFLSISHNQIL 262

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGL-------------------------VNLTGLC 203
           +     +  L+ LE L++ +C IG EGL                         + +  + 
Sbjct: 263 NGGAKAISSLSKLEILHISNCDIGCEGLQYISKNLKNLTEIDIGGNHFGMDGVIVIASMN 322

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLS------FTGISDGSLRKL---------- 247
           NLK L ++++ +G  G+++LS + NL  +N+S      F G S   L+ L          
Sbjct: 323 NLKVLSIAESCLGLLGVQYLSKMENLTYLNISDNIDDIFIGESINDLQNLTTLLYTNNSL 382

Query: 248 --------AGLSSLKSLNLDARQITDTGLAAL--------------------------TS 273
                   + L+ L +LN+++ +I+D  +  L                           S
Sbjct: 383 SMDEAITISSLTQLTTLNIESTEISDVHIEILCSSLHHLINLYADTNFITSWGVKLISES 442

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           +  L  L L G RI D G  Y+ + ++LR L +C   + D GV+ + + +   L  L  +
Sbjct: 443 MIDLESLYLSGNRIGDEGLTYICSLQHLRILGVCNCEIGDRGVQVLVNCAPKKLRELLID 502

Query: 334 C--NLTDKTLELISGLTGLVSLNVSNS 358
           C  N+T K  +LI  +  L S+ + N+
Sbjct: 503 CNENITSKGCKLIYSIPQLNSIYLENN 529



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 31/166 (18%)

Query: 260 ARQITD-TGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT----- 312
           ++ I+D T L ++  L   L HLD++G+ I DSG A L   K L+ L I    LT     
Sbjct: 86  SKAISDKTNLISIEKLMPNLIHLDIYGSDIEDSGVACLCKLKELKILNIGSNKLTSKGRG 145

Query: 313 ----------------------DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
                                 ++G+K +K L  LT LN+S  C++    ++ I  +T L
Sbjct: 146 IEMISKFMKCLTNLDISFNSLGNSGMKQLK-LDKLTDLNVSY-CDIDATGIQFIRNMTCL 203

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 396
           + LN+S + I   G   L  LKNL+ L + S  +     K +   D
Sbjct: 204 IKLNISGNNINCKGALLLSNLKNLQELDIASACLKEEGAKHISRMD 249



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 140/337 (41%), Gaps = 36/337 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS L NL  L    +  +  +G K  + + NL  L +     ++GG   +  L KLE L+
Sbjct: 221 LSNLKNLQELDIA-SACLKEEGAKHISRMDNLKFLSISHNQILNGGAKAISSLSKLEILH 279

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I  C+   +        L NL  + I  +     G+  +  +  L +L++    +    +
Sbjct: 280 ISNCDIGCEGLQYISKNLKNLTEIDIGGNHFGMDGVIVIASMNNLKVLSIAESCLGLLGV 339

Query: 125 DSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
             LS + +L YLN++   + D    E  + + +L  L    N ++ +  + +  LT L +
Sbjct: 340 QYLSKMENLTYLNISD-NIDDIFIGESINDLQNLTTLLYTNNSLSMDEAITISSLTQLTT 398

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL---TNLESINLSFTGIS 240
           LN++S  I D   V++  LC              S L HL  L   TN          I+
Sbjct: 399 LNIESTEISD---VHIEILC--------------SSLHHLINLYADTNF---------IT 432

Query: 241 DGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF- 298
              ++ ++  +  L+SL L   +I D GL  + SL  L  L +    I D G   L N  
Sbjct: 433 SWGVKLISESMIDLESLYLSGNRIGDEGLTYICSLQHLRILGVCNCEIGDRGVQVLVNCA 492

Query: 299 -KNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            K LR L I C   +T  G K I  +  L  + L  N
Sbjct: 493 PKKLRELLIDCNENITSKGCKLIYSIPQLNSIYLENN 529


>gi|84043398|ref|XP_951489.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|33348218|gb|AAQ15545.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|62359994|gb|AAX80418.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
          Length = 1110

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 192/428 (44%), Gaps = 60/428 (14%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL---DLERCTRIHG--GLVNLKGL-- 57
           L  L  L  L FR NN I     +    ++ L +L   D  + T I G   L NLK L  
Sbjct: 173 LKRLHMLKRLCFRSNN-IDNNDARHLFNIVTLEELAITDTMQLTNIRGISRLTNLKCLEL 231

Query: 58  ----------------MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGI 100
                            KL  L++  CN ITD+   P+S L  L+ L + SC  +T  GI
Sbjct: 232 NSTDIDDSCIGEISACAKLSKLSVSECNNITDA--TPISQLAALEELNLNSCYHIT-KGI 288

Query: 101 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSD-------------- 145
             L  L +L +L+L G PV   CL  L   GSL  LN++ C QL+D              
Sbjct: 289 ETLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELN 348

Query: 146 -DGCEKFSK-------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 196
            +GC + ++       +  L+VL++    +++  L  +    +L  L+L++C G GD  +
Sbjct: 349 LNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGSLVRLSLENCKGFGD--V 406

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKS 255
             L+ L  L+ L L      +SG+  L  L  L  ++L  T + + SL  +   S  L S
Sbjct: 407 KPLSNLVTLEELNLHYCDKVTSGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVS 466

Query: 256 LNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
           LNL   ++I  T ++A+ SLT L  L++  +    SG         LR   +    + D 
Sbjct: 467 LNLSHCKKI--TSISAIASLTALEELNIDNSCNVTSGWNVFGTLHQLRVATLSNTRINDE 524

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
            ++H+ +  SL  LNL+   ++TD T   +S +T L  LN+        G+  L  L   
Sbjct: 525 NIRHVSECKSLNTLNLAFCKDITDVT--ALSKITMLEELNLDCCPNIRKGIETLGKLPKA 582

Query: 375 RSLTLESC 382
           R L+++ C
Sbjct: 583 RILSMKEC 590



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 179/397 (45%), Gaps = 19/397 (4%)

Query: 1    MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
            +T+N+S   +L SL+      +T   +   + L  L +L++  C  I  G  +L G + L
Sbjct: 669  VTKNISESKSLRSLNLSHCKWVT--DISVLSSLSTLEELNVNCCNGIRKGWESL-GKLPL 725

Query: 61   ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
              + I     I   D+  LS    L  L+   C K++D  + Y   +Q L  L +  C  
Sbjct: 726  LRVAILSDTNIAAKDIACLSSCKTLVKLKFFRCEKLSDVTVVY--KIQSLEELIVRSCSD 783

Query: 120  TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 178
                L+ L  L  L +L L   + SD   E      SL  L++    E+TD  +  L  +
Sbjct: 784  GLKGLNDLGTLPRLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMRKELTD--ITPLSNI 841

Query: 179  TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            T+LE L+L  CG   EG+  L  L  LK L+L  + + +S L  +    ++ S+NL+ + 
Sbjct: 842  TSLEELSLRECGDNLEGVGTLGKLPRLKSLDLGLSDISNSALNDIFLSRSITSLNLASSW 901

Query: 239  -ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLR 296
             ++D S   ++ L++L+ LNL       +G  AL+ L  L  L+L  A +T      Y+ 
Sbjct: 902  KLTDIS--HISNLTALEELNLRRCYPITSGWEALSELPRLRVLNLESASVTTRYDGYYIS 959

Query: 297  NFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
              K+L +L +    +TDA  + +IK L  L +      C    +    +  L  L  LN+
Sbjct: 960  RCKSLVTLNLESCDMTDASCLANIKTLEELHI----GRCKELRRGFSPLFTLPRLRILNL 1015

Query: 356  SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
              S I    LR ++P   +  L L  C+   NDI  L
Sbjct: 1016 ICSLIKDEDLREIQPPHTIEELNLSYCE-NLNDITPL 1051



 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 173/401 (43%), Gaps = 75/401 (18%)

Query: 34  INLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNC---------------------- 70
           I LV L+L  C +I   +  +  L  LE LNI   CN                       
Sbjct: 462 IPLVSLNLSHCKKI-TSISAIASLTALEELNIDNSCNVTSGWNVFGTLHQLRVATLSNTR 520

Query: 71  ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
           I D +++ +S   +L +L ++ C  +TD  +  L  +  L  LNL+ CP     +++L  
Sbjct: 521 INDENIRHVSECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGK 578

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN---LESLNL 186
           L     L++  C + D   ++ S +G+ K L +  N       + +K L+N   LE L L
Sbjct: 579 LPKARILSMKECYMGDGYAQQCSILGNSKSL-VKLNLERSMGFISVKALSNIATLEELVL 637

Query: 187 DSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGS 243
           D     +E   + + + L  L+ L L  T +     +++S   +L S+NLS    ++D S
Sbjct: 638 DH---AEEVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTDIS 694

Query: 244 LRKLAGLSSLKSLNLDA----RQ---------------ITDTGLAA-----LTSLTGLTH 279
           +  L+ LS+L+ LN++     R+               ++DT +AA     L+S   L  
Sbjct: 695 V--LSSLSTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTNIAAKDIACLSSCKTLVK 752

Query: 280 LDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL-- 336
           L  F   +++D    Y      ++SLE         G+K + DL +L  L      N+  
Sbjct: 753 LKFFRCEKLSDVTVVY-----KIQSLEELIVRSCSDGLKGLNDLGTLPRLRFLLLRNVRG 807

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
           +D ++E I     LV L++   +     L  + PL N+ SL
Sbjct: 808 SDISVESIGTSKSLVRLHIEMRK----ELTDITPLSNITSL 844


>gi|167862002|gb|ACA05700.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|315301242|ref|ZP_07872475.1| internalin A [Listeria ivanovii FSL F6-596]
 gi|313630386|gb|EFR98286.1| internalin A [Listeria ivanovii FSL F6-596]
          Length = 595

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 143/282 (50%), Gaps = 39/282 (13%)

Query: 126 SLSALGSLFYLN-LNRCQLSDDGCEKFSK---IGSLKVLNLGFNEITDECLVHLKGLTNL 181
           ++ ++  + YLN L+R    ++     S+   + SL  +++G N I++  L  L  LTNL
Sbjct: 86  NIQSIEGIQYLNNLDRLYFGENNISDISQLSGVTSLTYVDVGENNISN--LSPLANLTNL 143

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           ESL LD   I D  + NL GL  L  L L+D  +    L  +SGL NL+ +      ISD
Sbjct: 144 ESLGLDKNNISD--ISNLAGLSKLSNLSLNDNNL--DNLSDVSGLINLKELKAGGNSISD 199

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             L  L+ L ++ SL L    I+D  L+ L  LT + +L+L+   I  S  + + NF ++
Sbjct: 200 --LTPLSNLINMVSLYLADNNISD--LSPLAKLTKIDYLNLYTNNI--SNISVVANFTDI 253

Query: 302 RSLEICGGGLTDAGV---------KH-----IKDLSSLT-LLNLSQ----NCNLTDKTLE 342
             L +    +TD  V          H     I D+S+L  L NL++    N N+TD  L 
Sbjct: 254 WGLYLGENNITDIAVLTNLTGLGELHLADNDIGDISNLANLTNLTELQLDNTNITD--LN 311

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
            +S LT L  L + N+RI+   ++ L+PL NL  L L++ ++
Sbjct: 312 PLSNLTNLEYLYLENNRISD--IKSLQPLSNLLFLDLDNNQI 351



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 123/267 (46%), Gaps = 50/267 (18%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD--LERCTRIHGGLVNLKGLMKLES 62
           L+ L+NL SL   +NN      +   + L NL   D  L+  + +  GL+NLK L     
Sbjct: 137 LANLTNLESLGLDKNNISDISNLAGLSKLSNLSLNDNNLDNLSDV-SGLINLKELK---- 191

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
                 N I  SD+ PLS L N+ SL ++ + ++D     L  L KLT ++         
Sbjct: 192 ---AGGNSI--SDLTPLSNLINMVSLYLADNNISD-----LSPLAKLTKID--------- 232

Query: 123 CLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
                       YLNL    +S+      F+ I  L    LG N ITD  +  L  LT L
Sbjct: 233 ------------YLNLYTNNISNISVVANFTDIWGLY---LGENNITD--IAVLTNLTGL 275

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L+L    IGD  + NL  L NL  L+L +T +  + L  LS LTNLE + L    ISD
Sbjct: 276 GELHLADNDIGD--ISNLANLTNLTELQLDNTNI--TDLNPLSNLTNLEYLYLENNRISD 331

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGL 268
             ++ L  LS+L  L+LD  QI D  +
Sbjct: 332 --IKSLQPLSNLLFLDLDNNQIRDISI 356



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 34/236 (14%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT-----------------LLNLEG 116
           S++ PL+ LTNL+SL +  + ++D  I+ L GL KL+                 L+NL+ 
Sbjct: 132 SNLSPLANLTNLESLGLDKNNISD--ISNLAGLSKLSNLSLNDNNLDNLSDVSGLINLKE 189

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLV 173
                  +  L+ L +L  +N+    L+D+     S   K+  +  LNL  N I++  +V
Sbjct: 190 LKAGGNSISDLTPLSNL--INMVSLYLADNNISDLSPLAKLTKIDYLNLYTNNISNISVV 247

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
                T++  L L    I D  +  LT L  L  L L+D  +G   + +L+ LTNL  + 
Sbjct: 248 --ANFTDIWGLYLGENNITDIAV--LTNLTGLGELHLADNDIGD--ISNLANLTNLTELQ 301

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
           L  T I+D  L  L+ L++L+ L L+  +I+D  + +L  L+ L  LDL   +I D
Sbjct: 302 LDNTNITD--LNPLSNLTNLEYLYLENNRISD--IKSLQPLSNLLFLDLDNNQIRD 353


>gi|22347544|gb|AAM95917.1| internalin A precursor [Listeria monocytogenes]
          Length = 741

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 82  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 136

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 137 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 185

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 186 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 241

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 242 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 297

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 298 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 355

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 356 LNDQEWTNPPVKYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 194/411 (47%), Gaps = 69/411 (16%)

Query: 27  MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD---- 73
           MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD    
Sbjct: 1   MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPL 60

Query: 74  ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEG 116
                           +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE 
Sbjct: 61  KDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLEL 115

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L 
Sbjct: 116 SSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LA 170

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+ 
Sbjct: 171 KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLAN 226

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + 
Sbjct: 227 NQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPIS 280

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N  
Sbjct: 281 NLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-- 330

Query: 357 NSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
                SAG   +  L PL NL  +T   L   + T   +K   +  +PN V
Sbjct: 331 ---WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVKYKVNVSIPNTV 378


>gi|167861934|gb|ACA05666.1| InlA [Listeria monocytogenes]
 gi|194326141|emb|CAQ77229.1| internalin A [Listeria monocytogenes]
          Length = 538

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL- 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 184/387 (47%), Gaps = 64/387 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 171

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  
Sbjct: 172 SSN--TISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV-- 224

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L
Sbjct: 225 LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL 280

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + 
Sbjct: 281 ANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISP 334

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N
Sbjct: 335 ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN 386

Query: 355 VSNSRITSAG---LRHLKPLKNLRSLT 378
                  SAG   +  L PL NL  +T
Sbjct: 387 -----WLSAGHNQISDLTPLANLTRIT 408


>gi|112959522|gb|ABI27288.1| truncated internalin A [Listeria monocytogenes]
          Length = 538

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 71  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL- 124

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 125 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 174

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 175 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 230

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 231 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 286

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 287 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 344

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 345 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 392



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 186/395 (47%), Gaps = 63/395 (15%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 5   QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 64

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
            +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L     T + + +LS L +
Sbjct: 65  IADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSN--TISDISALSGLTN 120

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 121 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 175

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 176 D--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTK 229

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 230 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 285

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 286 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 332

Query: 370 PLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           PL NL  +T   L   + T   +    +  +PN V
Sbjct: 333 PLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 367


>gi|85679228|gb|ABC72030.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 137 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 240

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 241 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 296

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 297 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 352

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 353 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 410

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 411 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 53  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 112

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 113 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 167

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 168 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 223

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 224 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 278

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 279 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 332

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 333 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 384

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 385 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 433


>gi|371942144|gb|AEX60884.1| truncated internaline [Listeria monocytogenes]
          Length = 491

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL- 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|313485061|gb|ADR53004.1| InlA [Listeria monocytogenes]
          Length = 724

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 185/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|219821396|gb|ACL37842.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVKYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 189/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +K   +  +PN V
Sbjct: 341 TPLANLTRITQLGLNDQEWTNPPVKYKVNVSIPNTV 376


>gi|195346821|ref|XP_002039953.1| GM15616 [Drosophila sechellia]
 gi|194135302|gb|EDW56818.1| GM15616 [Drosophila sechellia]
          Length = 538

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 159/302 (52%), Gaps = 28/302 (9%)

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLK 158
           G+  LT LNL GC    A ++   A    L +L  L+L+ C Q++D    + ++ + +L+
Sbjct: 232 GVPALTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLE 290

Query: 159 VLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKC 207
            L LG   N      L+   GL  L+ LNL SC  I D+G+ +L G           L+ 
Sbjct: 291 TLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 350

Query: 208 LELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 263
           L L D Q +    L H++ GLT+L+SINLSF   ++D  L+ LA +  L+ LNL +   I
Sbjct: 351 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNI 410

Query: 264 TDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI- 319
           +D G+A LT   +G+  LD+ F  +I+D    ++ +    LRSL +    +TD G+  I 
Sbjct: 411 SDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIA 470

Query: 320 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSL 377
           K L  L  LN+ Q   +TDK L+ L   LT L ++++   ++++S G+  +  L  L+ L
Sbjct: 471 KALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKL 530

Query: 378 TL 379
            L
Sbjct: 531 NL 532



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 40/245 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVN--LKG 56
           GL  L  L+ R    I+ QG+   AG         + L  L L+ C R+    +    +G
Sbjct: 311 GLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQG 370

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L  L+S+N+ +C  +TDS +K L+ +  L+ L + SC  ++D G+AYL +G   +  L++
Sbjct: 371 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 430

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C  ++   L  ++  L  L  L+LN+CQ++D G  K +                    
Sbjct: 431 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIA-------------------- 470

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
              K L  LE+LN+  C  I D+GL  L   L NLK ++L   TQ+ S G+  +  L  L
Sbjct: 471 ---KALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKL 527

Query: 230 ESINL 234
           + +NL
Sbjct: 528 QKLNL 532



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 34/244 (13%)

Query: 177 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 227
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 290

Query: 228 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 278
            LE     N++ TG+    L    GL  LK LNL +   I+D G+  L   +  T     
Sbjct: 291 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 346

Query: 279 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 331
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 347 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 405

Query: 332 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAND 388
              N++D  +  L  G +G+ SL+VS   +I+   L H+ + L  LRSL+L  C++T + 
Sbjct: 406 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHG 465

Query: 389 IKRL 392
           + ++
Sbjct: 466 MLKI 469



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 7/166 (4%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESL 63
            GL++L S++     ++T  G+K  A +  L +L+L  C  I   G+  L +G   + SL
Sbjct: 369 QGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSL 428

Query: 64  NIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VT 120
           ++ +C+ I+D  +  ++ GL  L+SL ++  ++TD G+  + K L +L  LN+  C  +T
Sbjct: 429 DVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRIT 488

Query: 121 AACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 164
              L +L+  L +L  ++L  C QLS  G +   K+  L+ LNLG 
Sbjct: 489 DKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGL 534


>gi|22347552|gb|AAM95921.1| internalin A precursor [Listeria monocytogenes]
          Length = 744

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 82  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 136

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 137 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 185

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 186 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 241

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 242 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 297

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 298 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 355

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 356 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 193/411 (46%), Gaps = 69/411 (16%)

Query: 27  MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD---- 73
           MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD    
Sbjct: 1   MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPL 60

Query: 74  ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEG 116
                           +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE 
Sbjct: 61  KDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLEL 115

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L 
Sbjct: 116 SSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LA 170

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+ 
Sbjct: 171 KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLAN 226

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + 
Sbjct: 227 NQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPIS 280

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N  
Sbjct: 281 NLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-- 330

Query: 357 NSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
                SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 331 ---WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 378


>gi|354476331|ref|XP_003500378.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cricetulus griseus]
          Length = 340

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 148/272 (54%), Gaps = 25/272 (9%)

Query: 142 QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLV 197
           Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + D G+ 
Sbjct: 72  QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIG 131

Query: 198 NLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRK 246
           +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD  L  
Sbjct: 132 HLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLH 191

Query: 247 LAGLSSLKSLNLDARQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLR 302
           L+ + SL+    D   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +    L+
Sbjct: 192 LSHMGSLRLPTCD--NISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLK 248

Query: 303 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SR 359
           SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++   +R
Sbjct: 249 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTR 308

Query: 360 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           IT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 309 ITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 340



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 38/238 (15%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS-CSKVTDSGIAYL-KG 105
           GL +L+SLN++ C  ++D  +  L+G+T         L+ L +  C K+TD  + ++ +G
Sbjct: 110 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRG 169

Query: 106 LQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKV--LN 161
           L  L LLNL  C  ++ A L  LS +GS   L L  C  +SD G    + +GSL++  L+
Sbjct: 170 LTGLRLLNLSFCGGISDAGLLHLSHMGS---LRLPTCDNISDTGIMHLA-MGSLRLSGLD 225

Query: 162 LGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VNLTGLCNL---KCLELSD 212
           + F +++ D+ L ++ +GL  L+SL+L SC I D+G+      + GL  L   +C+ ++D
Sbjct: 226 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 285

Query: 213 TQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
                 GL     HLS LT ++      T I+   L ++  L  LK LNL   Q+TD+
Sbjct: 286 -----KGLELIAEHLSQLTGIDLYG--CTRITKRGLERITQLPCLKVLNLGLWQMTDS 336


>gi|344248327|gb|EGW04431.1| Insulin-like growth factor-binding protein complex acid labile
           chain [Cricetulus griseus]
          Length = 416

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 134/301 (44%), Gaps = 1/301 (0%)

Query: 81  GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
           GL  L+ L +S + +          L +L  L L+   VTA    +   + +L +L+L+ 
Sbjct: 29  GLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNFVTAVAPGAFLGMKALRWLDLSH 88

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
            +++    + F  +  L VL L  N IT       K L  LE L L    I   G     
Sbjct: 89  NRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFE 148

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
           GL  L+ L L+D Q+    +   SGL N+  +NLS   + +   R   GLS L SL+L+ 
Sbjct: 149 GLGQLEVLTLNDNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERVFQGLSKLHSLHLEH 208

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
             +    L   T L+GL  L L G  I+ +    L     L  L++    LT    +  +
Sbjct: 209 SCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQLTHLPRRLFQ 268

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
            L  L  L LS N  L+  + +++S L  +  L++S++R+ +       PL  LR L+L 
Sbjct: 269 GLGQLEYLLLSNN-RLSALSEDVLSPLQRVFWLDISHNRLEALSEGLFSPLGRLRYLSLR 327

Query: 381 S 381
           +
Sbjct: 328 N 328



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 153/395 (38%), Gaps = 31/395 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG-----LMK 59
             GL NL  L    N     Q    F GL  L +LDL R       L ++K      L +
Sbjct: 3   FQGLGNLRELVLAGNKLAYLQP-SLFCGLGELRELDLSR-----NALRSVKANVFIHLPR 56

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L+ L +   N +T        G+  L+ L +S ++V         GL  L +L L    +
Sbjct: 57  LQKLYLD-RNFVTAVAPGAFLGMKALRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAI 115

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
           T+    +   L  L  L L   ++   G + F  +G L+VL L  N+I +  +    GL 
Sbjct: 116 TSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFEGLGQLEVLTLNDNQIHEVKMGAFSGLF 175

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           N+  +NL    + +       GL  L  L L  + +G   L   +GL+ L  + L    I
Sbjct: 176 NVAVMNLSGNCLRNLPERVFQGLSKLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSI 235

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           S    + LAGLS L  L+L A Q+T         L  L +L L   R++      L   +
Sbjct: 236 SITEEQSLAGLSELLELDLTANQLTHLPRRLFQGLGQLEYLLLSNNRLSALSEDVLSPLQ 295

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL----NV 355
            +  L+I    L          L  L  L+L  N      +L+  S   GL  L    N 
Sbjct: 296 RVFWLDISHNRLEALSEGLFSPLGRLRYLSLRNN------SLQTFSPQPGLERLWLDANP 349

Query: 356 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
            + R          PLK LR   L++  +    ++
Sbjct: 350 WDCRC---------PLKALRDFALQNPSIVPRFVQ 375


>gi|219821297|gb|ACL37776.1| internalin A [Listeria monocytogenes]
 gi|219821303|gb|ACL37780.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 341 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 376


>gi|195487977|ref|XP_002092120.1| GE11843 [Drosophila yakuba]
 gi|194178221|gb|EDW91832.1| GE11843 [Drosophila yakuba]
          Length = 533

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 162/339 (47%), Gaps = 53/339 (15%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 111
           G+  L SLN+  C  + D ++       L NLK+L +S C ++TD+ +  + + L+ L  
Sbjct: 227 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 286

Query: 112 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L L GC        L     L  L +LNL  C  +SD G      IG L     GF+  T
Sbjct: 287 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG------IGHLA----GFSRET 336

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
            E            +L L+  G+ D             C  LSD  +G        GLT+
Sbjct: 337 AE-----------GNLQLEYLGLQD-------------CQRLSDEALGHIA----QGLTS 368

Query: 229 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FG 284
           L+SINLSF   ++D  L+ LA +  L+ LNL +   I+D G+A LT   +G+  LD+ F 
Sbjct: 369 LKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFC 428

Query: 285 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 342
            +I+D    ++ +    LRSL +    +TD G+  I K L  L  LN+ Q   +TDK L+
Sbjct: 429 DKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQ 488

Query: 343 -LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
            L   LT L ++++   ++++S G+  +  L  L+ L L
Sbjct: 489 TLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 527



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 40/245 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVN--LKG 56
           GL  L  L+ R    I+ QG+   AG         + L  L L+ C R+    +    +G
Sbjct: 306 GLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQG 365

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L  L+S+N+ +C  +TDS +K L+ +  L+ L + SC  ++D G+AYL +G   +  L++
Sbjct: 366 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 425

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C  ++   L  ++  L  L  L+LN+CQ++D G  K +                    
Sbjct: 426 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIA-------------------- 465

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
              K L  LE+LN+  C  I D+GL  L   L NLK ++L   TQ+ S G+  +  L  L
Sbjct: 466 ---KALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKL 522

Query: 230 ESINL 234
           + +NL
Sbjct: 523 QKLNL 527



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 34/244 (13%)

Query: 177 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 227
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 227 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 285

Query: 228 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 278
            LE     N++ TG+    L    GL  LK LNL +   I+D G+  L   +  T     
Sbjct: 286 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 341

Query: 279 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 331
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 342 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 400

Query: 332 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAND 388
              N++D  +  L  G +G+ SL+VS   +I+   L H+ + L  LRSL+L  C++T + 
Sbjct: 401 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHG 460

Query: 389 IKRL 392
           + ++
Sbjct: 461 MLKI 464



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 7/166 (4%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESL 63
            GL++L S++     ++T  G+K  A +  L +L+L  C  I   G+  L +G   + SL
Sbjct: 364 QGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSL 423

Query: 64  NIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VT 120
           ++ +C+ I+D  +  ++ GL  L+SL ++  ++TD G+  + K L +L  LN+  C  +T
Sbjct: 424 DVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRIT 483

Query: 121 AACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 164
              L +L+  L +L  ++L  C QLS  G +   K+  L+ LNLG 
Sbjct: 484 DKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGL 529


>gi|85679218|gb|ABC72025.1| InlA [Listeria monocytogenes]
 gi|85679232|gb|ABC72032.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 137 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 240

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 241 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 296

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 297 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 352

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 353 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 410

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 411 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 53  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 112

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 113 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 167

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 168 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 223

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 224 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 278

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 279 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 332

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 333 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 384

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 385 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 433


>gi|223006796|gb|ACM69355.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|112959500|gb|ABI27277.1| internalin A [Listeria monocytogenes]
 gi|112959502|gb|ABI27278.1| internalin A [Listeria monocytogenes]
 gi|112959510|gb|ABI27282.1| internalin A [Listeria monocytogenes]
 gi|112959512|gb|ABI27283.1| internalin A [Listeria monocytogenes]
 gi|112959524|gb|ABI27289.1| internalin A [Listeria monocytogenes]
 gi|112959530|gb|ABI27292.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 75  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 129

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 130 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 178

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 179 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 234

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 235 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 290

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 291 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 348

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 349 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 9   QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 68

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 69  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 123

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 124 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 178

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 179 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 232

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 233 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 288

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 289 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 335

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 336 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 371


>gi|290892407|ref|ZP_06555401.1| InlA protein [Listeria monocytogenes FSL J2-071]
 gi|290557973|gb|EFD91493.1| InlA protein [Listeria monocytogenes FSL J2-071]
          Length = 796

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 141 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 195

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 196 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 244

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 245 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 300

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 301 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 356

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 357 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 414

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 415 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 462



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 57  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 116

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 117 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 171

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 172 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 227

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 228 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 282

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 283 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 337

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 338 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 388

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 389 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 437


>gi|300693080|ref|YP_003749053.1| type III effector protein [Ralstonia solanacearum PSI07]
 gi|299075117|emb|CBJ34399.1| leucine-rich-repeat type III effector protein (GALA3) [Ralstonia
           solanacearum PSI07]
          Length = 492

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 166/361 (45%), Gaps = 31/361 (8%)

Query: 36  LVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 94
           L +LDL RC R+   GL +L  L  L  LNI  C        + L+    L SL +  ++
Sbjct: 98  LRELDLSRCERLRVEGLDHLLEL-PLVRLNINGCRLGAKGAQR-LANHPTLTSLDMHGNR 155

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 154
           + D G  YL    +LT+L++    +  A + +L+   +L  L+L+R +   DG    +  
Sbjct: 156 IGDEGAKYLAANTRLTVLDVGDNMIGDAGVIALARNTTLTSLHLDRNKFGLDGIRALADN 215

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
            +L  LN+  N I  E    L   T L +L+++   IGD+G   L     L  L + + +
Sbjct: 216 TTLTTLNVNKNSIRPEGAEVLATNTTLTTLDIEGNAIGDQGAQRLAASKTLTALNVRENE 275

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-------------GLS---------- 251
           +G +G   L+    L S+ + + GI   ++  +A             G+S          
Sbjct: 276 IGRAGGFALAVNKTLVSLAVGYNGIGSEAVIAMAANKRLISLDVEYTGISTAVAEVAAAL 335

Query: 252 ----SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
               SL  LN+ A    D G   L +   +T L++   RI   GA  L   K + SL++ 
Sbjct: 336 AASTSLVCLNVGANGFGDEGARRLAASKTITTLNVSYNRIGRDGALALAASKMITSLDLA 395

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
           G  +  AG+K + D ++L  LNLS++  +  + +E ++  T L SL+VS + +  A +R 
Sbjct: 396 GNIIGTAGIKALVDNTTLATLNLSKS-QIAHEGVEALATNTTLASLDVSCNNLAPASVRM 454

Query: 368 L 368
           L
Sbjct: 455 L 455



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 151/355 (42%), Gaps = 12/355 (3%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L+    LTSL     N I  +G K  A    L  LD+        G++ L     L S
Sbjct: 138 QRLANHPTLTSLDMH-GNRIGDEGAKYLAANTRLTVLDVGDNMIGDAGVIALARNTTLTS 196

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++       D  ++ L+  T L +L ++ + +   G   L     LT L++EG  +   
Sbjct: 197 LHLDRNKFGLDG-IRALADNTTLTTLNVNKNSIRPEGAEVLATNTTLTTLDIEGNAIGDQ 255

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
               L+A  +L  LN+   ++   G    +   +L  L +G+N I  E ++ +     L 
Sbjct: 256 GAQRLAASKTLTALNVRENEIGRAGGFALAVNKTLVSLAVGYNGIGSEAVIAMAANKRLI 315

Query: 183 SLNLDSCGIGDEGLVNLTGL---CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           SL+++  GI          L    +L CL +     G  G R L+    + ++N+S+  I
Sbjct: 316 SLDVEYTGISTAVAEVAAALAASTSLVCLNVGANGFGDEGARRLAASKTITTLNVSYNRI 375

Query: 240 S-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
             DG+L  LA    + SL+L    I   G+ AL   T L  L+L  ++I   G   L   
Sbjct: 376 GRDGAL-ALAASKMITSLDLAGNIIGTAGIKALVDNTTLATLNLSKSQIAHEGVEALATN 434

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDK----TLELISGLT 348
             L SL++    L  A V+ +   + L LL  S   C+L  K    TL +  G+T
Sbjct: 435 TTLASLDVSCNNLAPASVRMLLTRTKLALLEASFSACDLGAKAELMTLAVRIGMT 489


>gi|428320680|ref|YP_007118562.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
           PCC 7112]
 gi|428244360|gb|AFZ10146.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
           PCC 7112]
          Length = 360

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 133/257 (51%), Gaps = 20/257 (7%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           SD+ PL  LTNLK+L I  +++ D  I+ L  L  LT+L L+   ++   +  L+ L  L
Sbjct: 104 SDIAPLQSLTNLKTLVIDVNQILD--ISPLSSLINLTVLVLDTNQISD--ISPLAGLTDL 159

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             L L   ++SD    K   + +L  L L  N+I+D  +  L+ LT L++L L +  I D
Sbjct: 160 TALVLFDNKISDITPVK--NLTNLNALILYNNQISD--IAPLENLTELQTLYLYNNKISD 215

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
             +  L  L NL  L L   ++  S L  L  LTNL  + L    ISD S   L  L++L
Sbjct: 216 --ITPLASLKNLTTLFLFGNEI--SDLTPLEALTNLNKLVLFQNKISDIS--PLTSLTNL 269

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
             LNL   QI+D  ++ L SLT LT L LF   I+DS A  L+   NL  L++    ++D
Sbjct: 270 IELNLGNNQISD--ISPLKSLTNLTELYLFNNPISDSSA--LQALNNLFLLDLYNNQISD 325

Query: 314 AGVKHIKDLSSLTLLNL 330
             +  ++ L  LT L+L
Sbjct: 326 --ISSLESLHKLTTLDL 340


>gi|340052071|emb|CBY84387.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|219821369|gb|ACL37824.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 341 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 376


>gi|167862040|gb|ACA05719.1| InlA [Listeria monocytogenes]
 gi|194326153|emb|CAQ77235.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|167861924|gb|ACA05661.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLSDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLSDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|322952092|gb|ADX21045.1| internalin A [Listeria monocytogenes]
 gi|322952094|gb|ADX21046.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|322952096|gb|ADX21047.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|298359724|gb|ADI77441.1| truncated internalin A [Listeria monocytogenes]
 gi|298359728|gb|ADI77443.1| truncated internalin A [Listeria monocytogenes]
 gi|298359760|gb|ADI77459.1| truncated internalin A [Listeria monocytogenes]
 gi|298359768|gb|ADI77463.1| truncated internalin A [Listeria monocytogenes]
 gi|298359778|gb|ADI77468.1| truncated internalin A [Listeria monocytogenes]
 gi|298359784|gb|ADI77471.1| truncated internalin A [Listeria monocytogenes]
 gi|298359796|gb|ADI77477.1| truncated internalin A [Listeria monocytogenes]
 gi|298359800|gb|ADI77479.1| truncated internalin A [Listeria monocytogenes]
 gi|298359816|gb|ADI77487.1| truncated internalin A [Listeria monocytogenes]
 gi|298359840|gb|ADI77499.1| truncated internalin A [Listeria monocytogenes]
 gi|298359850|gb|ADI77504.1| truncated internalin A [Listeria monocytogenes]
 gi|298359852|gb|ADI77505.1| truncated internalin A [Listeria monocytogenes]
 gi|298359860|gb|ADI77509.1| truncated internalin A [Listeria monocytogenes]
 gi|298359916|gb|ADI77537.1| truncated internalin A [Listeria monocytogenes]
 gi|298359928|gb|ADI77543.1| truncated internalin A [Listeria monocytogenes]
 gi|298359936|gb|ADI77547.1| truncated internalin A [Listeria monocytogenes]
 gi|298359962|gb|ADI77560.1| truncated internalin A [Listeria monocytogenes]
 gi|298359996|gb|ADI77577.1| truncated internalin A [Listeria monocytogenes]
 gi|298360016|gb|ADI77587.1| truncated internalin A [Listeria monocytogenes]
 gi|298360018|gb|ADI77588.1| truncated internalin A [Listeria monocytogenes]
 gi|298360022|gb|ADI77590.1| truncated internalin A [Listeria monocytogenes]
 gi|298360024|gb|ADI77591.1| truncated internalin A [Listeria monocytogenes]
 gi|298360046|gb|ADI77602.1| truncated internalin A [Listeria monocytogenes]
 gi|298360048|gb|ADI77603.1| truncated internalin A [Listeria monocytogenes]
 gi|298360058|gb|ADI77608.1| truncated internalin A [Listeria monocytogenes]
 gi|298360062|gb|ADI77610.1| truncated internalin A [Listeria monocytogenes]
 gi|298360088|gb|ADI77623.1| truncated internalin A [Listeria monocytogenes]
 gi|298360120|gb|ADI77639.1| truncated internalin A [Listeria monocytogenes]
 gi|298360152|gb|ADI77655.1| truncated internalin A [Listeria monocytogenes]
 gi|298360168|gb|ADI77663.1| truncated internalin A [Listeria monocytogenes]
 gi|298360204|gb|ADI77681.1| truncated internalin A [Listeria monocytogenes]
 gi|298360210|gb|ADI77684.1| truncated internalin A [Listeria monocytogenes]
 gi|298360224|gb|ADI77691.1| truncated internalin A [Listeria monocytogenes]
 gi|298360248|gb|ADI77703.1| truncated internalin A [Listeria monocytogenes]
 gi|298360250|gb|ADI77704.1| truncated internalin A [Listeria monocytogenes]
 gi|298360272|gb|ADI77715.1| truncated internalin A [Listeria monocytogenes]
 gi|298360308|gb|ADI77733.1| truncated internalin A [Listeria monocytogenes]
 gi|298360340|gb|ADI77749.1| truncated internalin A [Listeria monocytogenes]
 gi|298360382|gb|ADI77770.1| truncated internalin A [Listeria monocytogenes]
 gi|298360392|gb|ADI77775.1| truncated internalin A [Listeria monocytogenes]
 gi|298360408|gb|ADI77783.1| truncated internalin A [Listeria monocytogenes]
 gi|298360418|gb|ADI77788.1| truncated internalin A [Listeria monocytogenes]
 gi|298360430|gb|ADI77794.1| truncated internalin A [Listeria monocytogenes]
 gi|298360438|gb|ADI77798.1| truncated internalin A [Listeria monocytogenes]
 gi|298360444|gb|ADI77801.1| truncated internalin A [Listeria monocytogenes]
 gi|298360446|gb|ADI77802.1| truncated internalin A [Listeria monocytogenes]
 gi|298360476|gb|ADI77817.1| truncated internalin A [Listeria monocytogenes]
 gi|298360482|gb|ADI77820.1| truncated internalin A [Listeria monocytogenes]
 gi|298360484|gb|ADI77821.1| truncated internalin A [Listeria monocytogenes]
 gi|298360486|gb|ADI77822.1| truncated internalin A [Listeria monocytogenes]
 gi|298360490|gb|ADI77824.1| truncated internalin A [Listeria monocytogenes]
 gi|298360512|gb|ADI77835.1| truncated internalin A [Listeria monocytogenes]
 gi|298360526|gb|ADI77842.1| truncated internalin A [Listeria monocytogenes]
 gi|298360534|gb|ADI77846.1| truncated internalin A [Listeria monocytogenes]
 gi|298360574|gb|ADI77866.1| truncated internalin A [Listeria monocytogenes]
 gi|298360584|gb|ADI77871.1| truncated internalin A [Listeria monocytogenes]
 gi|298360618|gb|ADI77888.1| truncated internalin A [Listeria monocytogenes]
 gi|298360622|gb|ADI77890.1| truncated internalin A [Listeria monocytogenes]
 gi|298360626|gb|ADI77892.1| truncated internalin A [Listeria monocytogenes]
 gi|298360628|gb|ADI77893.1| truncated internalin A [Listeria monocytogenes]
 gi|298360646|gb|ADI77902.1| truncated internalin A [Listeria monocytogenes]
 gi|298360650|gb|ADI77904.1| truncated internalin A [Listeria monocytogenes]
 gi|298360664|gb|ADI77911.1| truncated internalin A [Listeria monocytogenes]
 gi|298360686|gb|ADI77922.1| truncated internalin A [Listeria monocytogenes]
 gi|298360702|gb|ADI77930.1| truncated internalin A [Listeria monocytogenes]
 gi|298360718|gb|ADI77938.1| truncated internalin A [Listeria monocytogenes]
 gi|443428870|gb|AGC92234.1| truncated internalin A [Listeria monocytogenes]
          Length = 605

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|290979178|ref|XP_002672311.1| predicted protein [Naegleria gruberi]
 gi|284085887|gb|EFC39567.1| predicted protein [Naegleria gruberi]
          Length = 347

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 123/261 (47%), Gaps = 5/261 (1%)

Query: 142 QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
           +L+D+  + F K+  L  L + +  EI  + +V LK LT L   ++ SC    E +  + 
Sbjct: 84  KLNDEWFDVFEKMNQLTELQIDWVREIDLKRIVDLKQLTKL---SVCSCTEDVEQVKLIG 140

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
            +  L  L++S  + G  G + + G+T L  + +    I     + L  L  LK L +  
Sbjct: 141 EMKQLTELKISSNKFGDEGAKIIGGMTQLTKLEIKSNRIGKLGAKALCNLKELKELRISE 200

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
             +  +G  +++ L  LT L +   ++   GA  +    NL +L IC   +  AG K I 
Sbjct: 201 NALGASGAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNLTNLSICSDQIGAAGAKSIS 260

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
            +  L  L+   N  + DK  + I  +  L SL++S + I   G + +  LKNLR L + 
Sbjct: 261 KMKQLLTLSADGNA-IGDKGAKAIGEMKQLTSLHLSFNHIGFEGAKAISELKNLRYLNMT 319

Query: 381 SCKVTANDIKRLQSRDLPNLV 401
           +  +++   + LQ+  LP L+
Sbjct: 320 TNPLSSEGAQLLQNMKLPKLI 340



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 118/269 (43%), Gaps = 7/269 (2%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIK 66
           L     + F+    +  +    F  +  L +L ++    I    +V+LK L KL      
Sbjct: 71  LHYFVKIKFKSVYKLNDEWFDVFEKMNQLTELQIDWVREIDLKRIVDLKQLTKLSV---- 126

Query: 67  WCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 125
            C+C  D +   L G +  L  L+IS +K  D G   + G+ +LT L ++   +      
Sbjct: 127 -CSCTEDVEQVKLIGEMKQLTELKISSNKFGDEGAKIIGGMTQLTKLEIKSNRIGKLGAK 185

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           +L  L  L  L ++   L   G +  S++  L  L + +N++  E    +  + NL +L+
Sbjct: 186 ALCNLKELKELRISENALGASGAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNLTNLS 245

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           + S  IG  G  +++ +  L  L      +G  G + +  +  L S++LSF  I     +
Sbjct: 246 ICSDQIGAAGAKSISKMKQLLTLSADGNAIGDKGAKAIGEMKQLTSLHLSFNHIGFEGAK 305

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSL 274
            ++ L +L+ LN+    ++  G   L ++
Sbjct: 306 AISELKNLRYLNMTTNPLSSEGAQLLQNM 334



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 106/252 (42%), Gaps = 2/252 (0%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           + D        +  L  LQI   +  D  +  +  L++LT L++  C      +  +  +
Sbjct: 85  LNDEWFDVFEKMNQLTELQIDWVREID--LKRIVDLKQLTKLSVCSCTEDVEQVKLIGEM 142

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
             L  L ++  +  D+G +    +  L  L +  N I       L  L  L+ L +    
Sbjct: 143 KQLTELKISSNKFGDEGAKIIGGMTQLTKLEIKSNRIGKLGAKALCNLKELKELRISENA 202

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           +G  G  +++ L  L  L +   Q+G  G + +S + NL ++++    I     + ++ +
Sbjct: 203 LGASGAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNLTNLSICSDQIGAAGAKSISKM 262

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
             L +L+ D   I D G  A+  +  LT L L    I   GA  +   KNLR L +    
Sbjct: 263 KQLLTLSADGNAIGDKGAKAIGEMKQLTSLHLSFNHIGFEGAKAISELKNLRYLNMTTNP 322

Query: 311 LTDAGVKHIKDL 322
           L+  G + ++++
Sbjct: 323 LSSEGAQLLQNM 334


>gi|219821282|gb|ACL37766.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  + +L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISSLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 180/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  +++L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISSLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|46906689|ref|YP_013078.1| internalin A [Listeria monocytogenes serotype 4b str. F2365]
 gi|254932755|ref|ZP_05266114.1| internalin A [Listeria monocytogenes HPB2262]
 gi|405748809|ref|YP_006672275.1| internalin A [Listeria monocytogenes ATCC 19117]
 gi|405751670|ref|YP_006675135.1| internalin A [Listeria monocytogenes SLCC2378]
 gi|417316727|ref|ZP_12103366.1| internalin A [Listeria monocytogenes J1-220]
 gi|424713328|ref|YP_007014043.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
 gi|424822183|ref|ZP_18247196.1| Internalin-A [Listeria monocytogenes str. Scott A]
 gi|50400895|sp|Q723K6.1|INLA_LISMF RecName: Full=Internalin-A; Flags: Precursor
 gi|46879954|gb|AAT03255.1| internalin A [Listeria monocytogenes serotype 4b str. F2365]
 gi|130774757|gb|ABO32393.1| InlA [Listeria monocytogenes]
 gi|130774763|gb|ABO32396.1| InlA [Listeria monocytogenes]
 gi|130774781|gb|ABO32405.1| InlA [Listeria monocytogenes]
 gi|130774785|gb|ABO32407.1| InlA [Listeria monocytogenes]
 gi|130774789|gb|ABO32409.1| InlA [Listeria monocytogenes]
 gi|167861870|gb|ACA05634.1| InlA [Listeria monocytogenes]
 gi|167861880|gb|ACA05639.1| InlA [Listeria monocytogenes]
 gi|167861882|gb|ACA05640.1| InlA [Listeria monocytogenes]
 gi|167861884|gb|ACA05641.1| InlA [Listeria monocytogenes]
 gi|167861886|gb|ACA05642.1| InlA [Listeria monocytogenes]
 gi|167861896|gb|ACA05647.1| InlA [Listeria monocytogenes]
 gi|167861898|gb|ACA05648.1| InlA [Listeria monocytogenes]
 gi|167861910|gb|ACA05654.1| InlA [Listeria monocytogenes]
 gi|167861912|gb|ACA05655.1| InlA [Listeria monocytogenes]
 gi|167861952|gb|ACA05675.1| InlA [Listeria monocytogenes]
 gi|167861958|gb|ACA05678.1| InlA [Listeria monocytogenes]
 gi|167861960|gb|ACA05679.1| InlA [Listeria monocytogenes]
 gi|167861966|gb|ACA05682.1| InlA [Listeria monocytogenes]
 gi|167861988|gb|ACA05693.1| InlA [Listeria monocytogenes]
 gi|167861996|gb|ACA05697.1| InlA [Listeria monocytogenes]
 gi|167862008|gb|ACA05703.1| InlA [Listeria monocytogenes]
 gi|167862010|gb|ACA05704.1| InlA [Listeria monocytogenes]
 gi|167862014|gb|ACA05706.1| InlA [Listeria monocytogenes]
 gi|167862016|gb|ACA05707.1| InlA [Listeria monocytogenes]
 gi|194239380|emb|CAQ76830.1| internalin A [Listeria monocytogenes]
 gi|194239394|emb|CAQ76837.1| internalin A [Listeria monocytogenes]
 gi|194326167|emb|CAQ77242.1| internalin A [Listeria monocytogenes]
 gi|223006786|gb|ACM69350.1| internalin A [Listeria monocytogenes]
 gi|223006788|gb|ACM69351.1| internalin A [Listeria monocytogenes]
 gi|223006798|gb|ACM69356.1| internalin A [Listeria monocytogenes]
 gi|223006804|gb|ACM69359.1| internalin A [Listeria monocytogenes]
 gi|223006810|gb|ACM69362.1| internalin A [Listeria monocytogenes]
 gi|293584308|gb|EFF96340.1| internalin A [Listeria monocytogenes HPB2262]
 gi|294358391|gb|ADE73848.1| InlA [Listeria monocytogenes]
 gi|294358403|gb|ADE73854.1| InlA [Listeria monocytogenes]
 gi|298359884|gb|ADI77521.1| internalin A [Listeria monocytogenes]
 gi|298359898|gb|ADI77528.1| internalin A [Listeria monocytogenes]
 gi|298359902|gb|ADI77530.1| internalin A [Listeria monocytogenes]
 gi|298359908|gb|ADI77533.1| internalin A [Listeria monocytogenes]
 gi|298359940|gb|ADI77549.1| internalin A [Listeria monocytogenes]
 gi|298359948|gb|ADI77553.1| internalin A [Listeria monocytogenes]
 gi|298360056|gb|ADI77607.1| internalin A [Listeria monocytogenes]
 gi|298360094|gb|ADI77626.1| internalin A [Listeria monocytogenes]
 gi|298360148|gb|ADI77653.1| internalin A [Listeria monocytogenes]
 gi|298360270|gb|ADI77714.1| internalin A [Listeria monocytogenes]
 gi|298360288|gb|ADI77723.1| internalin A [Listeria monocytogenes]
 gi|298360324|gb|ADI77741.1| internalin A [Listeria monocytogenes]
 gi|298360326|gb|ADI77742.1| internalin A [Listeria monocytogenes]
 gi|298360350|gb|ADI77754.1| internalin A [Listeria monocytogenes]
 gi|298360362|gb|ADI77760.1| internalin A [Listeria monocytogenes]
 gi|298360456|gb|ADI77807.1| internalin A [Listeria monocytogenes]
 gi|298360480|gb|ADI77819.1| internalin A [Listeria monocytogenes]
 gi|298360508|gb|ADI77833.1| internalin A [Listeria monocytogenes]
 gi|298360520|gb|ADI77839.1| internalin A [Listeria monocytogenes]
 gi|298360554|gb|ADI77856.1| internalin A [Listeria monocytogenes]
 gi|298360632|gb|ADI77895.1| internalin A [Listeria monocytogenes]
 gi|298360634|gb|ADI77896.1| internalin A [Listeria monocytogenes]
 gi|298360662|gb|ADI77910.1| internalin A [Listeria monocytogenes]
 gi|328475915|gb|EGF46639.1| internalin A [Listeria monocytogenes J1-220]
 gi|332310863|gb|EGJ23958.1| Internalin-A [Listeria monocytogenes str. Scott A]
 gi|340052073|emb|CBY84388.1| internalin A [Listeria monocytogenes]
 gi|340052075|emb|CBY84389.1| internalin A [Listeria monocytogenes]
 gi|404218009|emb|CBY69373.1| internalin A (LPXTG motif) [Listeria monocytogenes ATCC 19117]
 gi|404220870|emb|CBY72233.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2378]
 gi|424012512|emb|CCO63052.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
 gi|443428812|gb|AGC92205.1| internalin A [Listeria monocytogenes]
 gi|443428814|gb|AGC92206.1| internalin A [Listeria monocytogenes]
 gi|443428816|gb|AGC92207.1| internalin A [Listeria monocytogenes]
 gi|443428818|gb|AGC92208.1| internalin A [Listeria monocytogenes]
 gi|443428826|gb|AGC92212.1| internalin A [Listeria monocytogenes]
 gi|443428836|gb|AGC92217.1| internalin A [Listeria monocytogenes]
 gi|443428840|gb|AGC92219.1| internalin A [Listeria monocytogenes]
 gi|443428852|gb|AGC92225.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|322952083|gb|ADX21041.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|112961640|gb|ABI28446.1| truncated internalin A [Listeria monocytogenes]
 gi|112961643|gb|ABI28448.1| truncated internalin A [Listeria monocytogenes]
 gi|112961661|gb|ABI28460.1| truncated internalin A [Listeria monocytogenes]
          Length = 556

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 89  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL- 142

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 143 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 192

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 193 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 248

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 249 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 304

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 305 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 362

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 363 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 184/387 (47%), Gaps = 64/387 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 5   AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 64

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L
Sbjct: 65  TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 122

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  +  
Sbjct: 123 SSN--TISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV-- 175

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L
Sbjct: 176 LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL 231

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + 
Sbjct: 232 ANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISP 285

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N
Sbjct: 286 ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN 337

Query: 355 VSNSRITSAG---LRHLKPLKNLRSLT 378
                  SAG   +  L PL NL  +T
Sbjct: 338 -----WLSAGHNQISDLTPLANLTRIT 359


>gi|291001373|ref|XP_002683253.1| hypothetical protein NAEGRDRAFT_45222 [Naegleria gruberi]
 gi|284096882|gb|EFC50509.1| hypothetical protein NAEGRDRAFT_45222 [Naegleria gruberi]
          Length = 461

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 131/264 (49%), Gaps = 23/264 (8%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKG--------------LTNLESLNLDSCGIGDEGLV 197
           +++ SL++ N+   EI+ E   H+K               LTNL+ LN+++C IG+ G+ 
Sbjct: 121 TQLTSLEIPNVDLGEIS-ESYFHVKDIPKAGIIFCQAISQLTNLQKLNVNNCKIGNLGVQ 179

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
            +T L NL  L + +T + + GL  ++  L NL  +  + T     SL  +  L+SL S+
Sbjct: 180 FITQLGNLMELSVINTGMDAKGLNLIATRLKNLTKLQFNGTVQHVTSLSNMKQLTSL-SM 238

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
             D   +   G  A++ +  LT+L L      D G   +     L SL++CG  LT  G+
Sbjct: 239 GFDV-DVDVKGAKAISEMNNLTNLSL---NTNDEGLEEICKMTQLTSLKVCGFYLTTLGL 294

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
           K +  L  L  LNL+ + +  ++  +LIS L  L SL +++  I   G + +  LK L S
Sbjct: 295 KFLPRLKKLRKLNLNDHEDFGNEGAKLISELDQLTSLEINDIGIDKKGAKFITNLKQLTS 354

Query: 377 LTLESCKVTANDIKRLQSRDLPNL 400
           LT+ +  +    +K L   +LP L
Sbjct: 355 LTISNNPIFNEGVKYL--TELPQL 376



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 143/302 (47%), Gaps = 31/302 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           ++ L NL  LS   N  + A+G+   A  L NL KL      +    L N+K   +L SL
Sbjct: 181 ITQLGNLMELSVI-NTGMDAKGLNLIATRLKNLTKLQFNGTVQHVTSLSNMK---QLTSL 236

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           ++ +   +     K +S + NL +L ++ +   D G+  +  + +LT L + G  +T   
Sbjct: 237 SMGFDVDVDVKGAKAISEMNNLTNLSLNTN---DEGLEEICKMTQLTSLKVCGFYLTTLG 293

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L  L  L  L  LNLN         E F   G+             + +  L  LT+LE 
Sbjct: 294 LKFLPRLKKLRKLNLN-------DHEDFGNEGA-------------KLISELDQLTSLE- 332

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
             ++  GI  +G   +T L  L  L +S+  + + G+++L+ L  L ++N  FT I +  
Sbjct: 333 --INDIGIDKKGAKFITNLKQLTSLTISNNPIFNEGVKYLTELPQLTNLNARFTKIDNEG 390

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           ++ L+ +++LK LN+    + D G+ ++  +  LT LD+    I++ G A L+  K L+ 
Sbjct: 391 VKYLSEMANLKILNIKRNYVQDLGVESICGMKNLTELDIEQNEISEEGVAKLKEMKQLKV 450

Query: 304 LE 305
           L+
Sbjct: 451 LK 452



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 21/235 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--------ERCT-------RIHG 49
           LS +  LTSLS   +  +  +G KA + + NL  L L        E C        ++ G
Sbjct: 227 LSNMKQLTSLSMGFDVDVDVKGAKAISEMNNLTNLSLNTNDEGLEEICKMTQLTSLKVCG 286

Query: 50  ------GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 103
                 GL  L  L KL  LN+       +   K +S L  L SL+I+   +   G  ++
Sbjct: 287 FYLTTLGLKFLPRLKKLRKLNLNDHEDFGNEGAKLISELDQLTSLEINDIGIDKKGAKFI 346

Query: 104 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163
             L++LT L +   P+    +  L+ L  L  LN    ++ ++G +  S++ +LK+LN+ 
Sbjct: 347 TNLKQLTSLTISNNPIFNEGVKYLTELPQLTNLNARFTKIDNEGVKYLSEMANLKILNIK 406

Query: 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
            N + D  +  + G+ NL  L+++   I +EG+  L  +  LK L+ +D +    
Sbjct: 407 RNYVQDLGVESICGMKNLTELDIEQNEISEEGVAKLKEMKQLKVLKKADQRASKE 461



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 178/402 (44%), Gaps = 51/402 (12%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI-TDSDMKPLSGLTNLKSLQISC---- 92
           K  +  C+ I   + N+  + K   L +++C  I ++  M     L N+  L+IS     
Sbjct: 49  KFKILTCSLISKQVFNV--IRKYSKLILRFCRPIESNEKMMNNQFLENIVELRISTIMLN 106

Query: 93  SKVTDSGIAYLKGLQKLT---------------LLNLEGCPVTAACL-DSLSALGSLFYL 136
           +KV  + +   K + +LT                 +++  P        ++S L +L  L
Sbjct: 107 AKVLANILESFKFMTQLTSLEIPNVDLGEISESYFHVKDIPKAGIIFCQAISQLTNLQKL 166

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNL--------GFNEITDE-----------CLVHLKG 177
           N+N C++ + G +  +++G+L  L++        G N I               + H+  
Sbjct: 167 NVNNCKIGNLGVQFITQLGNLMELSVINTGMDAKGLNLIATRLKNLTKLQFNGTVQHVTS 226

Query: 178 LTNLESLNLDSCG----IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
           L+N++ L   S G    +  +G   ++ + NL  L L+       GL  +  +T L S+ 
Sbjct: 227 LSNMKQLTSLSMGFDVDVDVKGAKAISEMNNLTNLSLN---TNDEGLEEICKMTQLTSLK 283

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
           +    ++   L+ L  L  L+ LNL D     + G   ++ L  LT L++    I   GA
Sbjct: 284 VCGFYLTTLGLKFLPRLKKLRKLNLNDHEDFGNEGAKLISELDQLTSLEINDIGIDKKGA 343

Query: 293 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
            ++ N K L SL I    + + GVK++ +L  LT LN ++   + ++ ++ +S +  L  
Sbjct: 344 KFITNLKQLTSLTISNNPIFNEGVKYLTELPQLTNLN-ARFTKIDNEGVKYLSEMANLKI 402

Query: 353 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
           LN+  + +   G+  +  +KNL  L +E  +++   + +L+ 
Sbjct: 403 LNIKRNYVQDLGVESICGMKNLTELDIEQNEISEEGVAKLKE 444


>gi|219821300|gb|ACL37778.1| internalin A [Listeria monocytogenes]
 gi|219821378|gb|ACL37830.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 167/335 (49%), Gaps = 40/335 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L +
Sbjct: 75  ADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTN 129

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 130 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 184

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 185 D--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTK 238

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 239 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 294

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 295 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 341

Query: 370 PLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           PL NL  +T   L   + T   +    +  +PN V
Sbjct: 342 PLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 376


>gi|313485065|gb|ADR53005.1| InlA [Listeria monocytogenes]
          Length = 801

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|28555894|emb|CAD45029.1| NBS-LRR disease resistance protein homologue [Hordeum vulgare]
          Length = 1262

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 195/412 (47%), Gaps = 37/412 (8%)

Query: 1    MTENLSGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 59
              E+   L NL  L+   +N    + + ++F  L NL  L+L  C ++     +L GL  
Sbjct: 770  FPESFGSLENLQILNL--SNCFELESLPESFGSLKNLQTLNLVECKKLESLPESLGGLKN 827

Query: 60   LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL---QKLTLLNLEG 116
            L++L+   C+ + +S  + L GL NL++L++S   V D+ ++ LK L   + L  L+L G
Sbjct: 828  LQTLDFSVCHKL-ESVPESLGGLNNLQTLKLS---VCDNLVSLLKSLGSLKNLQTLDLSG 883

Query: 117  CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEIT--DECLV 173
            C    +  +SL +L +L  LNL+ C   +   E   ++ +L+ LN+ +  E+    + L 
Sbjct: 884  CKKLESLPESLGSLENLQILNLSNCFKLESLPESLGRLKNLQTLNISWCTELVFLPKNLG 943

Query: 174  HLKGLT---------------------NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 212
            +LK L                      NLE+LNL  C   +    +L GL NL+ L+L  
Sbjct: 944  NLKNLPRLDLSGCMKLESLPDSLGSLENLETLNLSKCFKLESLPESLGGLQNLQTLDLLV 1003

Query: 213  TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 272
                 S    L GL NL+++ LSF    +     L GL +L++L L      ++   +L 
Sbjct: 1004 CHKLESLPESLGGLKNLQTLQLSFCHKLESLPESLGGLKNLQTLTLSVCDKLESLPESLG 1063

Query: 273  SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
            SL  L  L L       S    L + KNL +L +      ++  + +  L +L +LNLS 
Sbjct: 1064 SLKNLHTLKLQVCYKLKSLPESLGSIKNLHTLNLSVCHNLESIPESVGSLENLQILNLS- 1122

Query: 333  NCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
            NC   +   + +  L  L +L +S  +R+ S   ++L  LKNL++L L  CK
Sbjct: 1123 NCFKLESIPKSLGSLKNLQTLILSWCTRLVSLP-KNLGNLKNLQTLDLSGCK 1173



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 173/406 (42%), Gaps = 27/406 (6%)

Query: 1    MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH------GGLVNL 54
            + E+L GL+NL +L     + + +  +K+   L NL  LDL  C ++       G L NL
Sbjct: 842  VPESLGGLNNLQTLKLSVCDNLVSL-LKSLGSLKNLQTLDLSGCKKLESLPESLGSLENL 900

Query: 55   KGL-----MKLESL-------------NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 96
            + L      KLESL             NI WC  +     K L  L NL  L +S     
Sbjct: 901  QILNLSNCFKLESLPESLGRLKNLQTLNISWCTELVFLP-KNLGNLKNLPRLDLSGCMKL 959

Query: 97   DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 156
            +S    L  L+ L  LNL  C    +  +SL  L +L  L+L  C   +   E    + +
Sbjct: 960  ESLPDSLGSLENLETLNLSKCFKLESLPESLGGLQNLQTLDLLVCHKLESLPESLGGLKN 1019

Query: 157  LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
            L+ L L F    +     L GL NL++L L  C   +    +L  L NL  L+L      
Sbjct: 1020 LQTLQLSFCHKLESLPESLGGLKNLQTLTLSVCDKLESLPESLGSLKNLHTLKLQVCYKL 1079

Query: 217  SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276
             S    L  + NL ++NLS     +     +  L +L+ LNL      ++   +L SL  
Sbjct: 1080 KSLPESLGSIKNLHTLNLSVCHNLESIPESVGSLENLQILNLSNCFKLESIPKSLGSLKN 1139

Query: 277  LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
            L  L L       S    L N KNL++L++ G    ++    +  L +L  LNLS NC  
Sbjct: 1140 LQTLILSWCTRLVSLPKNLGNLKNLQTLDLSGCKKLESLPDSLGSLENLQTLNLS-NCFK 1198

Query: 337  TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
             +   E++  L  L +LN+       +    L  LK+L++L L  C
Sbjct: 1199 LESLPEILGSLKKLQTLNLFRCGKLESLPESLGSLKHLQTLVLIDC 1244



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 185/407 (45%), Gaps = 29/407 (7%)

Query: 1    MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
              E+++ LS L  L+   +  I+ +   +   L++LV LDL  CT +      L  L  L
Sbjct: 602  FPESITRLSKLHYLNLSGSRGIS-EIPSSVGKLVSLVHLDLSYCTNVKVIPKALGILRNL 660

Query: 61   ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            ++L++ WC  + +S  + L  + NL+ L +S     ++    L  L+ +  L+L  C   
Sbjct: 661  QTLDLSWCEKL-ESLPESLGSVQNLQRLNLSNCFELEALPESLGSLKDVQTLDLSSCYKL 719

Query: 121  AACLDSLSALGSLFYLNLNRCQ-----------------LSDDGCEK-------FSKIGS 156
             +  +SL +L ++  L+L+RC                  +   GC+K       F  + +
Sbjct: 720  ESLPESLGSLKNVQTLDLSRCYKLVSLPKNLGRLKNLRTIDLSGCKKLETFPESFGSLEN 779

Query: 157  LKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
            L++LNL  N    E L    G L NL++LNL  C   +    +L GL NL+ L+ S    
Sbjct: 780  LQILNLS-NCFELESLPESFGSLKNLQTLNLVECKKLESLPESLGGLKNLQTLDFSVCHK 838

Query: 216  GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
              S    L GL NL+++ LS        L+ L  L +L++L+L   +  ++   +L SL 
Sbjct: 839  LESVPESLGGLNNLQTLKLSVCDNLVSLLKSLGSLKNLQTLDLSGCKKLESLPESLGSLE 898

Query: 276  GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
             L  L+L      +S    L   KNL++L I          K++ +L +L  L+LS  C 
Sbjct: 899  NLQILNLSNCFKLESLPESLGRLKNLQTLNISWCTELVFLPKNLGNLKNLPRLDLS-GCM 957

Query: 336  LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
              +   + +  L  L +LN+S      +    L  L+NL++L L  C
Sbjct: 958  KLESLPDSLGSLENLETLNLSKCFKLESLPESLGGLQNLQTLDLLVC 1004



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 172/383 (44%), Gaps = 5/383 (1%)

Query: 1    MTENLSGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 59
            + E+L  + NL  L+   +N    + + ++   L ++  LDL  C ++     +L  L  
Sbjct: 674  LPESLGSVQNLQRLNL--SNCFELEALPESLGSLKDVQTLDLSSCYKLESLPESLGSLKN 731

Query: 60   LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
            +++L++  C  +  S  K L  L NL+++ +S  K  ++       L+ L +LNL  C  
Sbjct: 732  VQTLDLSRCYKLV-SLPKNLGRLKNLRTIDLSGCKKLETFPESFGSLENLQILNLSNCFE 790

Query: 120  TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
              +  +S  +L +L  LNL  C+  +   E    + +L+ L+       +     L GL 
Sbjct: 791  LESLPESFGSLKNLQTLNLVECKKLESLPESLGGLKNLQTLDFSVCHKLESVPESLGGLN 850

Query: 180  NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            NL++L L  C      L +L  L NL+ L+LS  +   S    L  L NL+ +NLS    
Sbjct: 851  NLQTLKLSVCDNLVSLLKSLGSLKNLQTLDLSGCKKLESLPESLGSLENLQILNLSNCFK 910

Query: 240  SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
             +     L  L +L++LN+            L +L  L  LDL G    +S    L + +
Sbjct: 911  LESLPESLGRLKNLQTLNISWCTELVFLPKNLGNLKNLPRLDLSGCMKLESLPDSLGSLE 970

Query: 300  NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
            NL +L +      ++  + +  L +L  L+L   C+  +   E + GL  L +L +S   
Sbjct: 971  NLETLNLSKCFKLESLPESLGGLQNLQTLDLLV-CHKLESLPESLGGLKNLQTLQLSFCH 1029

Query: 360  ITSAGLRHLKPLKNLRSLTLESC 382
               +    L  LKNL++LTL  C
Sbjct: 1030 KLESLPESLGGLKNLQTLTLSVC 1052



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 139/306 (45%), Gaps = 3/306 (0%)

Query: 80  SGLTNLKSLQI-SCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           S L  LK L++    K+ D      +  L KL  LNL G    +    S+  L SL +L+
Sbjct: 581 SALGQLKQLEVLIAQKLQDRQFPESITRLSKLHYLNLSGSRGISEIPSSVGKLVSLVHLD 640

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           L+ C       +    + +L+ L+L + E  +     L  + NL+ LNL +C   +    
Sbjct: 641 LSYCTNVKVIPKALGILRNLQTLDLSWCEKLESLPESLGSVQNLQRLNLSNCFELEALPE 700

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
           +L  L +++ L+LS      S    L  L N+++++LS         + L  L +L++++
Sbjct: 701 SLGSLKDVQTLDLSSCYKLESLPESLGSLKNVQTLDLSRCYKLVSLPKNLGRLKNLRTID 760

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
           L   +  +T   +  SL  L  L+L      +S      + KNL++L +      ++  +
Sbjct: 761 LSGCKKLETFPESFGSLENLQILNLSNCFELESLPESFGSLKNLQTLNLVECKKLESLPE 820

Query: 318 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
            +  L +L  L+ S  C+  +   E + GL  L +L +S      + L+ L  LKNL++L
Sbjct: 821 SLGGLKNLQTLDFSV-CHKLESVPESLGGLNNLQTLKLSVCDNLVSLLKSLGSLKNLQTL 879

Query: 378 TLESCK 383
            L  CK
Sbjct: 880 DLSGCK 885


>gi|434385223|ref|YP_007095834.1| Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus
           PCC 6605]
 gi|428016213|gb|AFY92307.1| Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus
           PCC 6605]
          Length = 362

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 154/323 (47%), Gaps = 86/323 (26%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           SD++P++ LTNL+ L +    +TD + +A LK L  L         + +  L  L  LGS
Sbjct: 98  SDLRPIASLTNLRKLSLYSHNITDLTPLANLKQLDALV--------INSNKLTDLKPLGS 149

Query: 133 LFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           L  LN       +    +  +K+ +LK L L ++ I D     +K + NL  L       
Sbjct: 150 LNNLNDLGLLGRNIVNIKPIAKLTNLKKLTLWYSSIQD-----IKAVKNLTQLT--EVSF 202

Query: 192 GDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
            D  + +L+ L NLK    LE+++++V  + +R LSGLTNL+ I L+   IS+  ++ LA
Sbjct: 203 IDTKIADLSPLANLKSLTTLEVTNSKV--TDIRALSGLTNLKRIVLNNNQISN--IQPLA 258

Query: 249 GLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
            L++LKSLNL+  +I++ T LA LTSLTG                               
Sbjct: 259 RLTNLKSLNLNFNRISNLTPLAGLTSLTG------------------------------- 287

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
                               +NLS N  + D  ++ I+ LT LV LN++N++IT     +
Sbjct: 288 --------------------INLSDN-QIVD--IQPIAALTQLVGLNLNNNKIT-----N 319

Query: 368 LKPLKNLRSLTLESCKVTANDIK 390
           +KPL  L+   LE+  V+ N +K
Sbjct: 320 IKPLAKLQK--LETLVVSKNKVK 340



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 124/253 (49%), Gaps = 22/253 (8%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           ++  A L NL KL L         + +L  L  L+ L+    N    +D+KPL  L NL 
Sbjct: 100 LRPIASLTNLRKLSLY-----SHNITDLTPLANLKQLDALVINSNKLTDLKPLGSLNNLN 154

Query: 87  SLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 145
            L +    + +   IA L  L+KLTL       + A  + +L+ L  + +++     LS 
Sbjct: 155 DLGLLGRNIVNIKPIAKLTNLKKLTLWYSSIQDIKA--VKNLTQLTEVSFIDTKIADLS- 211

Query: 146 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
                 + + SL  L +  +++TD  +  L GLTNL+ + L++  I +  +  L  L NL
Sbjct: 212 ----PLANLKSLTTLEVTNSKVTD--IRALSGLTNLKRIVLNNNQISN--IQPLARLTNL 263

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
           K L L+  ++  S L  L+GLT+L  INLS   I D  ++ +A L+ L  LNL+  +IT+
Sbjct: 264 KSLNLNFNRI--SNLTPLAGLTSLTGINLSDNQIVD--IQPIAALTQLVGLNLNNNKITN 319

Query: 266 T-GLAALTSLTGL 277
              LA L  L  L
Sbjct: 320 IKPLAKLQKLETL 332


>gi|313485075|gb|ADR53008.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 185/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|290980573|ref|XP_002673006.1| predicted protein [Naegleria gruberi]
 gi|284086587|gb|EFC40262.1| predicted protein [Naegleria gruberi]
          Length = 361

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 5/246 (2%)

Query: 149 EKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           +  ++I SLK +N     I D  E    L+G+ +L+ + +     G +G+  +  L  L 
Sbjct: 82  QYLNRIVSLKTVNSFDGSIIDNVELCEILQGMKDLKEVWIYKQLKGVKGIKKIGSLKQLT 141

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            L++S   +G  G++ L+ L+ L  + +    I D  ++ ++ +  L  L+L   +I D 
Sbjct: 142 ILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTKLDLSNCRIMD- 200

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
           G+  L+ L  LT L L G R+TD     + N K L  L I    L   G K I +++ LT
Sbjct: 201 GVQYLSKLENLTSLRLCGNRLTDERVESISNLKQLTELYIGENQLGTEGAKSIGNMTQLT 260

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
            LN+ QN     + ++ +  L  L  LN+S ++I   G+  +  +  L  LT+   K++ 
Sbjct: 261 RLNIQQNR--ISQGVKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLTIRDNKISE 318

Query: 387 NDIKRL 392
              K L
Sbjct: 319 EGAKTL 324



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 131/275 (47%), Gaps = 16/275 (5%)

Query: 52  VNLKGLMKLESLN----IKWCNCITDSDM------KPLSGLTNLKSLQISCSKVTDSGIA 101
           +NLK L K + LN    +K  N    S +      + L G+ +LK + I        GI 
Sbjct: 73  INLKSLAKSQYLNRIVSLKTVNSFDGSIIDNVELCEILQGMKDLKEVWIYKQLKGVKGIK 132

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161
            +  L++LT+L++    +    +  L+ L  L  L +    + DD  +  S++  L  L+
Sbjct: 133 KIGSLKQLTILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTKLD 192

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L    I D  + +L  L NL SL L  CG  + DE + +++ L  L  L + + Q+G+ G
Sbjct: 193 LSNCRIMD-GVQYLSKLENLTSLRL--CGNRLTDERVESISNLKQLTELYIGENQLGTEG 249

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
            + +  +T L  +N+    IS G ++ L  L  L  LN+   +I DTG+  ++ +  LT 
Sbjct: 250 AKSIGNMTQLTRLNIQQNRISQG-VKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTK 308

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
           L +   +I++ GA  L   + L  L+I    +++ 
Sbjct: 309 LTIRDNKISEEGAKTLGLLQKLTYLDISDNSVSNV 343



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 114/230 (49%), Gaps = 4/230 (1%)

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           +K +  L  L  L +S + +   G+ +L  L +LT L +    +    +  +S +  L  
Sbjct: 131 IKKIGSLKQLTILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTK 190

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L+L+ C++ D G +  SK+ +L  L L  N +TDE +  +  L  L  L +    +G EG
Sbjct: 191 LDLSNCRIMD-GVQYLSKLENLTSLRLCGNRLTDERVESISNLKQLTELYIGENQLGTEG 249

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
             ++  +  L  L +   ++ S G+++L  L  L  +N+S   I D  +  ++ ++ L  
Sbjct: 250 AKSIGNMTQLTRLNIQQNRI-SQGVKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTK 308

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
           L +   +I++ G   L  L  LT+LD+    +++  A  ++  KN++SL+
Sbjct: 309 LTIRDNKISEEGAKTLGLLQKLTYLDISDNSVSNVTANSMQ--KNMKSLK 356



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LS LT L    NN+I    +K  + +  L KLDL  C RI  G+  L  L  L SL 
Sbjct: 158 LTQLSQLTELRIG-NNSIFDDDIKMISEMKQLTKLDLSNC-RIMDGVQYLSKLENLTSLR 215

Query: 65  IKWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           +  C N +TD  ++ +S L  L  L I  +++   G   +  + +LT LN++   ++   
Sbjct: 216 L--CGNRLTDERVESISNLKQLTELYIGENQLGTEGAKSIGNMTQLTRLNIQQNRISQG- 272

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
           +  L  L  L  LN+++ ++ D G    S++  L  L +  N+I++E
Sbjct: 273 VKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLTIRDNKISEE 319


>gi|223006806|gb|ACM69360.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|196229410|ref|ZP_03128275.1| hypothetical protein CfE428DRAFT_1440 [Chthoniobacter flavus
           Ellin428]
 gi|196226642|gb|EDY21147.1| hypothetical protein CfE428DRAFT_1440 [Chthoniobacter flavus
           Ellin428]
          Length = 299

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 107/222 (48%), Gaps = 11/222 (4%)

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
           D+ G+ D     + GL +LK L      +  +GL+ L+GL  LE ++ +    SD  +R 
Sbjct: 57  DNKGLTDADYRQIRGLDHLKMLGCG-AGLDDAGLKALAGLPALEQLSTNGMTASDEGVRT 115

Query: 247 LAGLSSLKSLNL--DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRS 303
           LA   +L+S+      +  T TGLAAL ++  L  L + G+    D G A +    +L+ 
Sbjct: 116 LAACKALRSIAFFHPGKSFTGTGLAALAAIPNLERLTVAGSTEFGDDGLAAVAQIAHLKE 175

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQN------CNLTDKTLELISGLTGLVSLNVSN 357
                 G T  G++ ++ L  L  L + Q         ++D T+  ++G+  L  L++  
Sbjct: 176 FRTWHAGATVEGIRKLQALKELKSLTIGQRLANKPPVMVSDDTVAAVAGMPSLEMLSLQE 235

Query: 358 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 399
           +R+T   L  LK L NL+ LTL+   +    I  L+ ++LP 
Sbjct: 236 ARLTLPALGKLKQLPNLKRLTLDGIDIPEAQIAELR-QELPK 276



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 23/225 (10%)

Query: 52  VNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL---KGLQ 107
            + + +  L+ L +  C   + D+ +K L+GL  L+ L  +    +D G+  L   K L+
Sbjct: 64  ADYRQIRGLDHLKMLGCGAGLDDAGLKALAGLPALEQLSTNGMTASDEGVRTLAACKALR 123

Query: 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
            +   +  G   T   L +L+A+ +L  L +    +  DDG    ++I  LK        
Sbjct: 124 SIAFFH-PGKSFTGTGLAALAAIPNLERLTVAGSTEFGDDGLAAVAQIAHLKEFRTWHAG 182

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
            T E +  L+ L  L+SL      IG         L N   + +SD  V +     ++G+
Sbjct: 183 ATVEGIRKLQALKELKSLT-----IGQR-------LANKPPVMVSDDTVAA-----VAGM 225

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
            +LE ++L    ++  +L KL  L +LK L LD   I +  +A L
Sbjct: 226 PSLEMLSLQEARLTLPALGKLKQLPNLKRLTLDGIDIPEAQIAEL 270



 Score = 42.4 bits (98), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 9/183 (4%)

Query: 26  GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITDSDMKPLSGLTN 84
           G+KA AGL  L +L     T    G+  L     L S+         T + +  L+ + N
Sbjct: 88  GLKALAGLPALEQLSTNGMTASDEGVRTLAACKALRSIAFFHPGKSFTGTGLAALAAIPN 147

Query: 85  LKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR--- 140
           L+ L ++ S +  D G+A +  +  L          T   +  L AL  L  L + +   
Sbjct: 148 LERLTVAGSTEFGDDGLAAVAQIAHLKEFRTWHAGATVEGIRKLQALKELKSLTIGQRLA 207

Query: 141 ----CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
                 +SDD     + + SL++L+L    +T   L  LK L NL+ L LD   I +  +
Sbjct: 208 NKPPVMVSDDTVAAVAGMPSLEMLSLQEARLTLPALGKLKQLPNLKRLTLDGIDIPEAQI 267

Query: 197 VNL 199
             L
Sbjct: 268 AEL 270


>gi|112959440|gb|ABI27247.1| truncated internalin A [Listeria monocytogenes]
 gi|112959442|gb|ABI27248.1| truncated internalin A [Listeria monocytogenes]
 gi|112959448|gb|ABI27251.1| truncated internalin A [Listeria monocytogenes]
 gi|112959454|gb|ABI27254.1| truncated internalin A [Listeria monocytogenes]
 gi|112959458|gb|ABI27256.1| truncated internalin A [Listeria monocytogenes]
 gi|112959460|gb|ABI27257.1| truncated internalin A [Listeria monocytogenes]
 gi|112959462|gb|ABI27258.1| truncated internalin A [Listeria monocytogenes]
 gi|112959472|gb|ABI27263.1| truncated internalin A [Listeria monocytogenes]
 gi|112959480|gb|ABI27267.1| truncated internalin A [Listeria monocytogenes]
 gi|112959482|gb|ABI27268.1| truncated internalin A [Listeria monocytogenes]
 gi|112959488|gb|ABI27271.1| truncated internalin A [Listeria monocytogenes]
 gi|112959514|gb|ABI27284.1| truncated internalin A [Listeria monocytogenes]
 gi|112959538|gb|ABI27296.1| truncated internalin A [Listeria monocytogenes]
 gi|112959542|gb|ABI27298.1| truncated internalin A [Listeria monocytogenes]
 gi|112959548|gb|ABI27301.1| truncated internalin A [Listeria monocytogenes]
          Length = 542

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 75  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL- 128

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 129 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 178

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 179 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 234

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 235 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 290

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 291 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 348

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 349 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 177/369 (47%), Gaps = 60/369 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 9   QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 68

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
            +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L     T + + +LS L +
Sbjct: 69  IADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSN--TISDISALSGLTN 124

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 125 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 179

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 180 D--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTK 233

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 234 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 289

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 290 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 336

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 337 PLANLTRIT 345


>gi|75907715|ref|YP_322011.1| small GTP-binding protein domain-containing protein [Anabaena
           variabilis ATCC 29413]
 gi|75701440|gb|ABA21116.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC
           29413]
          Length = 1107

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 164/335 (48%), Gaps = 32/335 (9%)

Query: 57  LMKLESL----NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 112
           L +LESL     +     + D  +K +SG  NLK+L +            L GL  L  L
Sbjct: 38  LQQLESLILGKQVGGYEWVGDRYLKKVSG-NNLKTLPLE-----------LLGLPNLRKL 85

Query: 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
           ++ G P+     D ++ +  L  L L R ++++   E  + + +L  L L  N+IT E  
Sbjct: 86  DISGNPLERIP-DLVTQILHLEELILIRVEITE-IPEAIANLTNLTHLILFSNQIT-ETP 142

Query: 173 VHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
             +  LTNL  L+L    I +  E + NLT L +L       T++  +    ++ LTNL 
Sbjct: 143 EAIAKLTNLTQLDLSDNQITEIPEAIANLTNLTHLILFSNQITEIPEA----IANLTNLT 198

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
            ++L    I++   + +A L++L  L+L   QIT+    A+ +LT LTHL LF  +IT+ 
Sbjct: 199 QLDLGDNQITEIP-KAIANLTNLTQLDLGDNQITEIP-KAIANLTNLTHLILFSNQITEI 256

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
             A + N  NL  L++    +T+   K I +L++LT L LS N     +  E I+ LT L
Sbjct: 257 PEA-IANLTNLMQLDLSYNQITEIP-KAIANLTNLTQLVLSDNK--ITEIPEAIANLTNL 312

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
             L++S+++IT      +  L NL  L     K+T
Sbjct: 313 TQLDLSDNKITEIP-ETIANLTNLTELYFNYNKIT 346



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 135/290 (46%), Gaps = 48/290 (16%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLM 58
           + E ++ L+NLT L    +N IT +  KA A L NL +LDL   + T I   + NL  L 
Sbjct: 187 IPEAIANLTNLTQLDLG-DNQIT-EIPKAIANLTNLTQLDLGDNQITEIPKAIANLTNLT 244

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
            L    I + N IT+   + ++ LTNL  L +S +++T+   A +  L  LT L L    
Sbjct: 245 HL----ILFSNQITEIP-EAIANLTNLMQLDLSYNQITEIPKA-IANLTNLTQLVLSDNK 298

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIGSLKVLNLGFNEITDECLVH 174
           +T        A+ +L   NL +  LSD+      E  + + +L  L   +N+IT +    
Sbjct: 299 ITEIP----EAIANL--TNLTQLDLSDNKITEIPETIANLTNLTELYFNYNKIT-QIAEA 351

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +  LTNL  L+L S  I                     TQ+  +    ++ LTNL  + L
Sbjct: 352 IAKLTNLTELHLSSNQI---------------------TQIPEA----IANLTNLTELYL 386

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
           ++  I+  +   +A L++L  L+LD  QIT     AL SL  L  LDL G
Sbjct: 387 NYNKITQIA-EAIAKLTNLTELHLDGNQITQIP-EALESLPKLEKLDLRG 434


>gi|167861906|gb|ACA05652.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 185/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|195383050|ref|XP_002050239.1| GJ20310 [Drosophila virilis]
 gi|194145036|gb|EDW61432.1| GJ20310 [Drosophila virilis]
          Length = 542

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 162/339 (47%), Gaps = 53/339 (15%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 111
           G+  L SLN+  C  + D ++       L NLK+L +S C ++TD+ +  + + L+ L  
Sbjct: 236 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLET 295

Query: 112 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L L GC        L     L  L +LNL  C  +SD G      IG L     GF+  T
Sbjct: 296 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 345

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
            E            +L L+  G+ D             C  LSD  +G        GLT+
Sbjct: 346 AE-----------GNLQLEYLGLQD-------------CQRLSDEALGHIA----QGLTS 377

Query: 229 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FG 284
           L+SINLSF   ++D  L+ LA +  L+ LNL +   I+D G+A LT   +G+  LD+ F 
Sbjct: 378 LKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFC 437

Query: 285 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 342
            +I+D    ++ +    LRSL +    +TD G+  I K L  L  LN+ Q   +TDK L+
Sbjct: 438 DKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQ 497

Query: 343 -LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
            L   L+ L ++++   ++++S G+  +  L  L+ L L
Sbjct: 498 TLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 536



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 40/245 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVN--LKG 56
           GL  L  L+ R    I+ QG+   AG         + L  L L+ C R+    +    +G
Sbjct: 315 GLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQG 374

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L  L+S+N+ +C  +TDS +K L+ +  L+ L + SC  ++D G+AYL +G   +  L++
Sbjct: 375 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 434

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C  ++   L  ++  L  L  L+LN+CQ++D G  K +                    
Sbjct: 435 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIA-------------------- 474

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
              K L  LE+LN+  C  I D+GL  L   L NLK ++L   TQ+ S G+  +  L  L
Sbjct: 475 ---KSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKL 531

Query: 230 ESINL 234
           + +NL
Sbjct: 532 QKLNL 536



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 34/237 (14%)

Query: 177 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 227
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 236 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLE 294

Query: 228 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 278
            LE     N++ TG+    L    GL  L+ LNL +   I+D G+  L   +  T     
Sbjct: 295 TLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 350

Query: 279 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 331
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 351 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 409

Query: 332 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 385
              N++D  +  L  G +G+ SL+VS   +I+   L H+ + L  LRSL+L  C++T
Sbjct: 410 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 466



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 7/166 (4%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESL 63
            GL++L S++     ++T  G+K  A +  L +L+L  C  I   G+  L +G   + SL
Sbjct: 373 QGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSL 432

Query: 64  NIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VT 120
           ++ +C+ I+D  +  ++ GL  L+SL ++  ++TD G+  + K L +L  LN+  C  +T
Sbjct: 433 DVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLNIGQCSRIT 492

Query: 121 AACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 164
              L +L+  L +L  ++L  C QLS  G +   K+  L+ LNLG 
Sbjct: 493 DKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGL 538


>gi|430746594|ref|YP_007205723.1| hypothetical protein Sinac_5912 [Singulisphaera acidiphila DSM
           18658]
 gi|430018314|gb|AGA30028.1| hypothetical protein Sinac_5912 [Singulisphaera acidiphila DSM
           18658]
          Length = 170

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 28/167 (16%)

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           LK L + +T+VG +G+  L+    +  ++L  T I+D  L+ L G+ SL  L+L A  IT
Sbjct: 23  LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 324
           D GLA L  +  L  LDL   +I+D                        AG++H+K L  
Sbjct: 83  DAGLAHLAGMDRLERLDLGYTKISD------------------------AGIEHLKGLKG 118

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
           L ++      N+TD+++ +I G   L ++N   S+IT AG   L+ +
Sbjct: 119 LDIV----ETNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM 161



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 8/170 (4%)

Query: 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
           NL+GCP        LSA+  L  L +   ++ D G  + +    +  L+L   +ITD  L
Sbjct: 6   NLQGCPNANGI--RLSAV-VLKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGL 62

Query: 173 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
             LKG+ +L  L+L + GI D GL +L G+  L+ L+L  T++  +G+ HL GL  L+ +
Sbjct: 63  KPLKGMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLKGLKGLDIV 122

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
               T ++D S+  + G   L+++N    +IT+ G   L  +  L  LD+
Sbjct: 123 E---TNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM--LPKLDI 167



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 77/142 (54%), Gaps = 3/142 (2%)

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L+ L +++  +GD G+  L     +  L+L  T++  +GL+ L G+ +L  ++L  TGI+
Sbjct: 23  LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           D  L  LAG+  L+ L+L   +I+D G+  L  L G   LD+    +TD     +  F+ 
Sbjct: 83  DAGLAHLAGMDRLERLDLGYTKISDAGIEHLKGLKG---LDIVETNVTDRSIPIIGGFER 139

Query: 301 LRSLEICGGGLTDAGVKHIKDL 322
           L ++   G  +T+AG + ++ +
Sbjct: 140 LEAINPRGSKITEAGEEQLRKM 161



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%)

Query: 85  LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
           LK L I  ++V D+G+A L     +  L+L G  +T A L  L  + SL +L+L    ++
Sbjct: 23  LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
           D G    + +  L+ L+LG+ +I+D  + HLKG   L+ L++    + D  +  + G   
Sbjct: 83  DAGLAHLAGMDRLERLDLGYTKISDAGIEHLKG---LKGLDIVETNVTDRSIPIIGGFER 139

Query: 205 LKCLELSDTQVGSSGLRHL 223
           L+ +    +++  +G   L
Sbjct: 140 LEAINPRGSKITEAGEEQL 158



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 25/122 (20%)

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           LK L ++  ++ D G+A L S  G+  LDL G +ITD+G   L+  K+L  L +   G+T
Sbjct: 23  LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 372
           DAG+ H+                         +G+  L  L++  ++I+ AG+ HLK LK
Sbjct: 83  DAGLAHL-------------------------AGMDRLERLDLGYTKISDAGIEHLKGLK 117

Query: 373 NL 374
            L
Sbjct: 118 GL 119



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 3/125 (2%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           + D+ M  L+    +  L +  +K+TD+G+  LKG++ L  L+L    +T A L  L+ +
Sbjct: 33  VGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGITDAGLAHLAGM 92

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
             L  L+L   ++SD G E       LK L++    +TD  +  + G   LE++N     
Sbjct: 93  DRLERLDLGYTKISDAGIEHLK---GLKGLDIVETNVTDRSIPIIGGFERLEAINPRGSK 149

Query: 191 IGDEG 195
           I + G
Sbjct: 150 ITEAG 154



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 13/160 (8%)

Query: 4   NLSGLSN-----LTSLSFRR----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 54
           NL G  N     L+++  +R    N  +   GM   A    + +LDL        GL  L
Sbjct: 6   NLQGCPNANGIRLSAVVLKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPL 65

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           KG+  L  L+++    ITD+ +  L+G+  L+ L +  +K++D+GI +LKGL+ L ++  
Sbjct: 66  KGMKSLVHLSLR-ATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLKGLKGLDIVET 124

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 154
               VT   +  +     L  +N    ++++ G E+  K+
Sbjct: 125 N---VTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM 161



 Score = 39.3 bits (90), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 25/117 (21%)

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           L  L +   R+ D+G A L +   +  L++ G  +TDAG+K +K                
Sbjct: 23  LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLK---------------- 66

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
                    G+  LV L++  + IT AGL HL  +  L  L L   K++   I+ L+
Sbjct: 67  ---------GMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLK 114


>gi|405757422|ref|YP_006686698.1| internalin A protein InlA, N-terminal part, partial [Listeria
           monocytogenes SLCC2479]
 gi|145687805|gb|ABP88875.1| truncated internalin A precursor [Listeria monocytogenes]
 gi|145687811|gb|ABP88878.1| truncated internalin A precursor [Listeria monocytogenes]
 gi|145687813|gb|ABP88879.1| truncated internalin A precursor [Listeria monocytogenes]
 gi|167861890|gb|ACA05644.1| InlA [Listeria monocytogenes]
 gi|167861942|gb|ACA05670.1| InlA [Listeria monocytogenes]
 gi|167861986|gb|ACA05692.1| InlA [Listeria monocytogenes]
 gi|194326143|emb|CAQ77230.1| internalin A [Listeria monocytogenes]
 gi|298359794|gb|ADI77476.1| truncated internalin A [Listeria monocytogenes]
 gi|298359982|gb|ADI77570.1| truncated internalin A [Listeria monocytogenes]
 gi|298360074|gb|ADI77616.1| truncated internalin A [Listeria monocytogenes]
 gi|298360136|gb|ADI77647.1| truncated internalin A [Listeria monocytogenes]
 gi|298360184|gb|ADI77671.1| truncated internalin A [Listeria monocytogenes]
 gi|298360286|gb|ADI77722.1| truncated internalin A [Listeria monocytogenes]
 gi|298360300|gb|ADI77729.1| truncated internalin A [Listeria monocytogenes]
 gi|298360306|gb|ADI77732.1| truncated internalin A [Listeria monocytogenes]
 gi|298360344|gb|ADI77751.1| truncated internalin A [Listeria monocytogenes]
 gi|298360352|gb|ADI77755.1| truncated internalin A [Listeria monocytogenes]
 gi|298360358|gb|ADI77758.1| truncated internalin A [Listeria monocytogenes]
 gi|298360602|gb|ADI77880.1| truncated internalin A [Listeria monocytogenes]
 gi|298360636|gb|ADI77897.1| truncated internalin A [Listeria monocytogenes]
 gi|371942098|gb|AEX60861.1| truncated internaline [Listeria monocytogenes]
 gi|371942122|gb|AEX60873.1| truncated internaline [Listeria monocytogenes]
 gi|404235304|emb|CBY56706.1| similar to internalin A protein InlA, N-terminal part [Listeria
           monocytogenes SLCC2479]
          Length = 576

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL- 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 184/387 (47%), Gaps = 64/387 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 171

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  
Sbjct: 172 SSN--TISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV-- 224

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L
Sbjct: 225 LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL 280

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + 
Sbjct: 281 ANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISP 334

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N
Sbjct: 335 ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN 386

Query: 355 VSNSRITSAG---LRHLKPLKNLRSLT 378
                  SAG   +  L PL NL  +T
Sbjct: 387 -----WLSAGHNQISDLTPLANLTRIT 408


>gi|298359896|gb|ADI77527.1| internalin A [Listeria monocytogenes]
          Length = 797

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|290996875|ref|XP_002681007.1| leucine-rich repeat family protein [Naegleria gruberi]
 gi|284094630|gb|EFC48263.1| leucine-rich repeat family protein [Naegleria gruberi]
          Length = 398

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 139/307 (45%), Gaps = 28/307 (9%)

Query: 65  IKWCNCIT-DSDMKPLSGLTNLKSLQISCS--------------KVTDSGIAYL------ 103
           ++ C C+T D D++P+S ++ L  L IS +              K+ + G  ++      
Sbjct: 84  LELCECLTGDKDIRPISRMSQLTKLNISKNAKYHLSDIFDMKQLKILEIGENFIGDEQAE 143

Query: 104 ---KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160
                L++LT+L +    + +  +  LS L  L  L+L+    +D    + +K+  LK L
Sbjct: 144 LLSNHLKQLTILRINNNLIHSQGVKHLSKLDQLTELDLSGNAFNDTIGSEIAKMEQLKTL 203

Query: 161 N---LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
           +   L  + +          L  L SL++ +  IGDEG   ++ L  L  L +   ++G 
Sbjct: 204 HVNKLARHRMGSRLGSQFGNLFQLTSLSISNNYIGDEGANEISNLTQLTELYVHGAEIGY 263

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
            G R LS L  L  +++S   I D  +R    LS L  L +   +I D G   ++ +  L
Sbjct: 264 RGARSLSVLHQLTKLDISTNHIGDEGVRLFKQLSKLTELVVFNNRIGDVGAQLISEIPQL 323

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
           T L +   +I + GA  +     L+ L I G  + D G K + +++ L  + +  N N++
Sbjct: 324 TSLVVSSNQIGNEGAKSISQMSKLKYLSINGNQIGDQGAKLLSEMNQLRRIEVYGN-NIS 382

Query: 338 DKTLELI 344
           ++  +L 
Sbjct: 383 NEIFQLF 389



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 14/231 (6%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL---KGLMKLESLNIKWCNCITDSD 75
           NN I +QG+K  + L  L +LDL       G   N      + K+E L     N +    
Sbjct: 159 NNLIHSQGVKHLSKLDQLTELDLS------GNAFNDTIGSEIAKMEQLKTLHVNKLARHR 212

Query: 76  M-----KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           M          L  L SL IS + + D G   +  L +LT L + G  +      SLS L
Sbjct: 213 MGSRLGSQFGNLFQLTSLSISNNYIGDEGANEISNLTQLTELYVHGAEIGYRGARSLSVL 272

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
             L  L+++   + D+G   F ++  L  L +  N I D     +  +  L SL + S  
Sbjct: 273 HQLTKLDISTNHIGDEGVRLFKQLSKLTELVVFNNRIGDVGAQLISEIPQLTSLVVSSNQ 332

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           IG+EG  +++ +  LK L ++  Q+G  G + LS +  L  I +    IS+
Sbjct: 333 IGNEGAKSISQMSKLKYLSINGNQIGDQGAKLLSEMNQLRRIEVYGNNISN 383



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 115/281 (40%), Gaps = 38/281 (13%)

Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
           F K G +   +  F+EI       +K + NL+SL++ +C IG+E L  +  + +L  LEL
Sbjct: 35  FVKFG-IYSQDFKFHEI-------IKMMKNLKSLSIGNCSIGEEDLKFIGEMNHLTELEL 86

Query: 211 SDTQVGSSGLRHLSGLTNLESINLS------------------------FTGISDGSLRK 246
            +   G   +R +S ++ L  +N+S                        F G     L  
Sbjct: 87  CECLTGDKDIRPISRMSQLTKLNISKNAKYHLSDIFDMKQLKILEIGENFIGDEQAELLS 146

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
              L  L  L ++   I   G+  L+ L  LT LDL G    D+  + +   + L++L +
Sbjct: 147 -NHLKQLTILRINNNLIHSQGVKHLSKLDQLTELDLSGNAFNDTIGSEIAKMEQLKTLHV 205

Query: 307 CGGGLTDAGVK---HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
                   G +      +L  LT L++S N  + D+    IS LT L  L V  + I   
Sbjct: 206 NKLARHRMGSRLGSQFGNLFQLTSLSISNNY-IGDEGANEISNLTQLTELYVHGAEIGYR 264

Query: 364 GLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPNLVSF 403
           G R L  L  L  L + +  +    ++   Q   L  LV F
Sbjct: 265 GARSLSVLHQLTKLDISTNHIGDEGVRLFKQLSKLTELVVF 305


>gi|219821357|gb|ACL37816.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESIIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLES+   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESIIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|404406915|ref|YP_006689630.1| internalin A [Listeria monocytogenes SLCC2376]
 gi|130774829|gb|ABO32427.1| InlA [Listeria monocytogenes]
 gi|167861972|gb|ACA05685.1| InlA [Listeria monocytogenes]
 gi|194326147|emb|CAQ77232.1| internalin A [Listeria monocytogenes]
 gi|404241064|emb|CBY62464.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2376]
          Length = 800

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|112961793|gb|ABI28548.1| internalin A [Listeria monocytogenes]
          Length = 696

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 34  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 88

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 89  F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 137

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 138 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 193

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 194 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 249

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 250 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 307

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 308 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 355



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 166/335 (49%), Gaps = 40/335 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L S
Sbjct: 29  ADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTS 83

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 84  LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 138

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 139 D--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTK 192

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D     + N KNL  L +    ++
Sbjct: 193 LTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 248

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 249 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 295

Query: 370 PLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           PL NL  +T   L   + T   +    +  +PN V
Sbjct: 296 PLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 330


>gi|85679220|gb|ABC72026.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 137 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 240

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 241 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 296

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 297 TELKLGANQISN--ISPLAGLAALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 352

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 353 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 410

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 411 LNDQAWTNPPVNYKTNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 185/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 53  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 112

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 113 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 167

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 168 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 223

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 224 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 278

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  L  LT+L+L   ++ D   +
Sbjct: 279 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLAALTNLELNENQLED--IS 332

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 333 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 384

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 385 N-----WLSAGHNQISDLTPLANLTRIT 407


>gi|219821309|gb|ACL37784.1| internalin A [Listeria monocytogenes]
 gi|219821393|gb|ACL37840.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 341 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 376


>gi|398024920|ref|XP_003865621.1| hypothetical protein, conserved [Leishmania donovani]
 gi|322503858|emb|CBZ38944.1| hypothetical protein, conserved [Leishmania donovani]
          Length = 1208

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 146/294 (49%), Gaps = 17/294 (5%)

Query: 98  SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
           SG+  L  L++L  L++   P+    L +L+   SL  + L+RC+      E   ++  L
Sbjct: 422 SGVRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECIILHRCR-GVRSLEPLRRLEHL 480

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQV 215
           + L+L    +TD  L+ L G T L  L LD C  I D   L NL G   L+ L +  T +
Sbjct: 481 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPRTLL 538

Query: 216 GSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
            ++ + H+     L  ++L S   ++D  +  L  L++L+ LNL    +TD G +AL  +
Sbjct: 539 SNANMHHIGLCDKLVELHLQSLRQLTDIGV--LKDLTALRVLNLSDNLVTDEGCSALHCM 596

Query: 275 TGLTHLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
             L  L+L   R IT   AA+    R    L SL++    ++DAGV  +++ + L  LNL
Sbjct: 597 PSLQRLNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQECTDLRYLNL 656

Query: 331 SQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESC 382
              C  ++ + L  +  ++ L  LN+  +R+T     R+L   +NLR L+L  C
Sbjct: 657 ---CGCSELRRLSWLQKMSSLRWLNLGGTRVTDEETKRYLPCTRNLRFLSLSGC 707



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 9/192 (4%)

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSL 253
           G+ +L  L  L+CL +  T +  + L+ L+  ++LE I L    G+   SL  L  L  L
Sbjct: 423 GVRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECIILHRCRGVR--SLEPLRRLEHL 480

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK-NLRSLEICGGGL 311
           +SL+L    +TDT L +LT  T L  L L   R ITD   ++L N +  L  L +    L
Sbjct: 481 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD--LSFLANLRGTLERLLMPRTLL 538

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
           ++A + HI     L  L+L     LTD  + ++  LT L  LN+S++ +T  G   L  +
Sbjct: 539 SNANMHHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTDEGCSALHCM 596

Query: 372 KNLRSLTLESCK 383
            +L+ L L SC+
Sbjct: 597 PSLQRLNLASCR 608



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 130/295 (44%), Gaps = 50/295 (16%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNLKGLMKL 60
           E L  L +L SLS     ++T   + +  G   L +L L+ C +I     L NL+G   L
Sbjct: 472 EPLRRLEHLQSLSLH-GLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TL 528

Query: 61  ESL-------------NIKWCNCITD---------SDMKPLSGLTNLKSLQISCSKVTDS 98
           E L             +I  C+ + +         +D+  L  LT L+ L +S + VTD 
Sbjct: 529 ERLLMPRTLLSNANMHHIGLCDKLVELHLQSLRQLTDIGVLKDLTALRVLNLSDNLVTDE 588

Query: 99  GIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGSLFYLNLNRCQLSDDGCEK 150
           G + L  +  L  LNL  C     C+ SL+A        +  L  L+++   +SD G   
Sbjct: 589 GCSALHCMPSLQRLNLASC----RCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLC 644

Query: 151 FSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCL 208
             +   L+ LNL G +E+    L  L+ +++L  LNL    + DE     L    NL+ L
Sbjct: 645 VQECTDLRYLNLCGCSELRR--LSWLQKMSSLRWLNLGGTRVTDEETKRYLPCTRNLRFL 702

Query: 209 ELSDTQVGSSGLRHL---SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
            LS    G S +R L     L  LE +NL  T ++D  L  L     L+ L+L++
Sbjct: 703 SLS----GCSSVRSLFFAVKLPQLEYLNLESTSVADSELACLCHCRKLRYLSLES 753



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 144/347 (41%), Gaps = 84/347 (24%)

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC------------------ 117
           ++PL  L +L+SL +    VTD+ +  L G  +L  L L+ C                  
Sbjct: 471 LEPLRRLEHLQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRGTLER 530

Query: 118 ---PVTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
              P T     ++  +G    L  L+L    QL+D G  K   + +L+VLNL  N +TDE
Sbjct: 531 LLMPRTLLSNANMHHIGLCDKLVELHLQSLRQLTDIGVLK--DLTALRVLNLSDNLVTDE 588

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
               L  + +L+ LNL SC                +C+        +SG      +  L 
Sbjct: 589 GCSALHCMPSLQRLNLASC----------------RCITSLAAAFTASG----RCMHRLL 628

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNL----DARQITDTGLAALTSLTGLTHLDLFGAR 286
           S+++S T ISD  +  +   + L+ LNL    + R+     L+ L  ++ L  L+L G R
Sbjct: 629 SLDVSHTNISDAGVLCVQECTDLRYLNLCGCSELRR-----LSWLQKMSSLRWLNLGGTR 683

Query: 287 ITDSGAA-YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           +TD     YL   +NLR L + G              SS+             ++L    
Sbjct: 684 VTDEETKRYLPCTRNLRFLSLSG-------------CSSV-------------RSLFFAV 717

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            L  L  LN+ ++ +  + L  L   + LR L+LESC V   D+  L
Sbjct: 718 KLPQLEYLNLESTSVADSELACLCHCRKLRYLSLESC-VDIRDVSPL 763


>gi|334145937|ref|YP_004508864.1| leucine-rich protein [Porphyromonas gingivalis TDC60]
 gi|333803091|dbj|BAK24298.1| leucine-rich protein [Porphyromonas gingivalis TDC60]
          Length = 1384

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 131/391 (33%), Positives = 188/391 (48%), Gaps = 44/391 (11%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E L  L++LT L    N     +G+ A   L  L  L   +  ++ G    L  L  L  
Sbjct: 235 EGLDSLTSLTELYLSGNQIAKLEGLNALTSLTELY-LSGNQIAKLEG----LNALTSLTG 289

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL---NLEGCPV 119
           LN+   N I  S ++ L+ LT+L  L +S     D+ IA L+GL  LT L   +L G  +
Sbjct: 290 LNLS-GNQI--SKLESLASLTSLTRLNLS-----DNQIAKLEGLNALTSLTGLDLRGNQI 341

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
             A L+ L  L SL  L+L   Q+     E    + SL  L+L  N+I+   L  L  LT
Sbjct: 342 --AKLEGLDHLTSLTRLDLRGNQIR--KLEGLDSLTSLTQLDLSGNQISK--LESLNALT 395

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           +L  L+L    I    L +L  L +L  L+LSD Q+    L  L+ LT+L  ++L    I
Sbjct: 396 SLTELDLSDNQIA--TLESLASLTSLTELDLSDNQIAK--LEGLNALTSLTGLDLRGNQI 451

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           +   L  L  L+SL  L+L   QI    L  L SLT LT LDL G +I  S    L    
Sbjct: 452 A--KLEGLDHLTSLTRLDLRGNQIR--KLEGLDSLTSLTQLDLSGNQI--SKLESLNALT 505

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
           +L  L++    +  A ++ +  L+SLT L+LS N       LE ++ LT L  L++S+++
Sbjct: 506 SLTELDLSDNQI--ATLEGLNALTSLTRLDLSDN---QIAKLESLASLTSLTRLDLSDNQ 560

Query: 360 ITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
           I  A L  LK L  L+ L      V+ NDI+
Sbjct: 561 I--AKLEGLKDLTQLQEL-----DVSGNDIQ 584



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 159/344 (46%), Gaps = 54/344 (15%)

Query: 85  LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
           LK L +S +++       L  L  LT L+L G  +  A L+ L+AL SL  L+L+  Q+ 
Sbjct: 67  LKKLDLSYNQI--RKFEGLDHLASLTELDLSGNQI--AKLEGLNALTSLTRLDLSYNQIR 122

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLC 203
               E    + SL  L+L  N+I    L  L  LT+L  L+L    I   EGL +LT L 
Sbjct: 123 --KFEGLDHLASLTELDLSGNQIAK--LEGLNALTSLTRLDLSDNQIAKLEGLDSLTSLT 178

Query: 204 NLKCLELSDTQVGS-SGLRHLSGLT----------NLESIN--LSFTGI--SDGSLRKLA 248
            L    LS  Q+    GL HL+ LT           LE ++   S TG+  S   +RKL 
Sbjct: 179 ELY---LSGNQIAKLEGLDHLTSLTRLDLRGNQIAKLEGLDHLTSLTGLNLSGNQIRKLE 235

Query: 249 GLSSLKSLN---LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
           GL SL SL    L   QI    L  L +LT LT L L G +I       L    +L  L 
Sbjct: 236 GLDSLTSLTELYLSGNQIA--KLEGLNALTSLTELYLSGNQIAKLEG--LNALTSLTGLN 291

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AG 364
           + G  +  + ++ +  L+SLT LNLS N       LE ++ LT L  L++  ++I    G
Sbjct: 292 LSGNQI--SKLESLASLTSLTRLNLSDN---QIAKLEGLNALTSLTGLDLRGNQIAKLEG 346

Query: 365 LRHL-------------KPLKNLRSLT-LESCKVTANDIKRLQS 394
           L HL             + L+ L SLT L    ++ N I +L+S
Sbjct: 347 LDHLTSLTRLDLRGNQIRKLEGLDSLTSLTQLDLSGNQISKLES 390


>gi|219821264|gb|ACL37754.1| internalin A [Listeria monocytogenes]
 gi|219821306|gb|ACL37782.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 341 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 376


>gi|223006802|gb|ACM69358.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 193/413 (46%), Gaps = 67/413 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ L+NL  L +  +++TD  I  LK L  L  L L
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 171

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  
Sbjct: 172 SSN--TISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV-- 224

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L
Sbjct: 225 LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL 280

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + 
Sbjct: 281 ANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISP 334

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N
Sbjct: 335 ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN 386

Query: 355 VSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
                  SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 387 -----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|130774813|gb|ABO32419.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ L+NL  L +  +++TD     +  L+ LT
Sbjct: 110 LTDITPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|397630643|gb|EJK69852.1| hypothetical protein THAOC_08850 [Thalassiosira oceanica]
          Length = 859

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 143/319 (44%), Gaps = 58/319 (18%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP----LSGLTNLKSLQISCSKVTDSG---IAYLKGL 106
           L+ +  L S+ +   N ITDS+M+     L  +T L    + CS +TD G   I  L+ L
Sbjct: 158 LEDIADLHSIEVSLPNSITDSEMEHAILYLQLVTRLNC--VGCSYLTDKGFKLIGRLREL 215

Query: 107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
           Q+L  L+          L SL+ LG+L            D  +K S  G L        +
Sbjct: 216 QELYFLH-------NKQLTSLTFLGNL------------DRLKKLSVDGMLNSRGKSTPQ 256

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
           +TDE L    G+   E  +L    IG                   D +V   GL HL+ +
Sbjct: 257 VTDETL----GIIAGEMHSLRELIIG------------------VDMEVSGIGLVHLAEM 294

Query: 227 TNLESINLSF---TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 282
             LES++L      GI+D  L+ L  L  L+SL +     ++D  L  L  L  +  L+L
Sbjct: 295 GRLESLSLERGAGEGITDNGLKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLEL 354

Query: 283 F---GARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
                +  TD GA  L   KNL+ L + G   LTD GV ++  +S+L  LNL    ++TD
Sbjct: 355 SCVDDSSFTDEGARQLSKLKNLKELSLVGWERLTDRGVYYLSKISTLECLNLRYCPSITD 414

Query: 339 KTLELISGLTGLVSLNVSN 357
           ++LE +  L GL  L +S+
Sbjct: 415 ESLEHLRYLKGLRKLELSD 433



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 8/148 (5%)

Query: 50  GLVNLKGLMKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGL 106
           GLV+L  + +LESL+++      ITD+ +K L  L  L+SL+I+ C+ ++D  + YL+ L
Sbjct: 287 GLVHLAEMGRLESLSLERGAGEGITDNGLKVLCSLGRLRSLRITHCAYLSDRSLNYLQHL 346

Query: 107 QKLTLLNL---EGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNL 162
            ++  L L   +    T      LS L +L  L+L    +L+D G    SKI +L+ LNL
Sbjct: 347 HRIEKLELSCVDDSSFTDEGARQLSKLKNLKELSLVGWERLTDRGVYYLSKISTLECLNL 406

Query: 163 GF-NEITDECLVHLKGLTNLESLNLDSC 189
            +   ITDE L HL+ L  L  L L  C
Sbjct: 407 RYCPSITDESLEHLRYLKGLRKLELSDC 434


>gi|195121256|ref|XP_002005136.1| GI19235 [Drosophila mojavensis]
 gi|193910204|gb|EDW09071.1| GI19235 [Drosophila mojavensis]
          Length = 545

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 162/339 (47%), Gaps = 53/339 (15%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 111
           G+  L SLN+  C  + D ++       L NLK+L +S C ++TD+ +  + + L+ L  
Sbjct: 239 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLET 298

Query: 112 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L L GC        L     L  L +LNL  C  +SD G      IG L     GF+  T
Sbjct: 299 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 348

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
            E            +L L+  G+ D             C  LSD  +G        GLT+
Sbjct: 349 AE-----------GNLQLEYLGLQD-------------CQRLSDEALGHIA----QGLTS 380

Query: 229 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FG 284
           L+SINLSF   ++D  L+ LA +  L+ LNL +   I+D G+A LT   +G+  LD+ F 
Sbjct: 381 LKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFC 440

Query: 285 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 342
            +I+D    ++ +    LRSL +    +TD G+  I K L  L  LN+ Q   +TDK L+
Sbjct: 441 DKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQ 500

Query: 343 -LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
            L   L+ L ++++   ++++S G+  +  L  L+ L L
Sbjct: 501 TLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 539



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 40/245 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVN--LKG 56
           GL  L  L+ R    I+ QG+   AG         + L  L L+ C R+    +    +G
Sbjct: 318 GLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQG 377

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L  L+S+N+ +C  +TDS +K L+ +  L+ L + SC  ++D G+AYL +G   +  L++
Sbjct: 378 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 437

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C  ++   L  ++  L  L  L+LN+CQ++D G  K +                    
Sbjct: 438 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIA-------------------- 477

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
              K L  LE+LN+  C  I D+GL  L   L NLK ++L   TQ+ S G+  +  L  L
Sbjct: 478 ---KSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKL 534

Query: 230 ESINL 234
           + +NL
Sbjct: 535 QKLNL 539



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 34/237 (14%)

Query: 177 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 227
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 239 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLE 297

Query: 228 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 278
            LE     N++ TG+    L    GL  L+ LNL +   I+D G+  L   +  T     
Sbjct: 298 TLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 353

Query: 279 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 331
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 354 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 412

Query: 332 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 385
              N++D  +  L  G +G+ SL+VS   +I+   L H+ + L  LRSL+L  C++T
Sbjct: 413 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 469



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 7/166 (4%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESL 63
            GL++L S++     ++T  G+K  A +  L +L+L  C  I   G+  L +G   + SL
Sbjct: 376 QGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSL 435

Query: 64  NIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VT 120
           ++ +C+ I+D  +  ++ GL  L+SL ++  ++TD G+  + K L +L  LN+  C  +T
Sbjct: 436 DVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLNIGQCSRIT 495

Query: 121 AACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 164
              L +L+  L +L  ++L  C QLS  G +   K+  L+ LNLG 
Sbjct: 496 DKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGL 541


>gi|320167357|gb|EFW44256.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 766

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 135/303 (44%), Gaps = 7/303 (2%)

Query: 86  KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 145
           K + +  +++T        GL  L  L L   P+T+   ++ S L  L YL+L+  QL+D
Sbjct: 86  KEVDLQSNQITAISPDAFAGLTSLNSLYLSDNPITSISANAFSDLTELSYLHLSYTQLTD 145

Query: 146 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
                F+ + +L  LNL F +IT         L  L++L+L++  I        TGL  L
Sbjct: 146 ISANAFTTLPALVSLNLEFTQITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTAL 205

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQ 262
             LEL + Q+ S      + LT L  + L+    TGIS+ +     GL++L +L L   Q
Sbjct: 206 VSLELDNNQITSISALAFANLTALSYLGLANNRITGISENTFT---GLTALAALYLLDNQ 262

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
           IT     A T LT LT L L   +IT   A        L  L +    +T         L
Sbjct: 263 ITSISANAFTDLTALTTLSLALNQITSISANAFTGLTTLAGLSLALNQITSISTNAFTGL 322

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
           ++L  L+L+ N  +T  +    +GLT L  L + N++I S        L  L  LTL + 
Sbjct: 323 TTLAGLDLALN-QITGISTNAFTGLTTLAVLRLDNNQIASISANAFTGLTMLFYLTLHNN 381

Query: 383 KVT 385
             T
Sbjct: 382 SFT 384



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 113/271 (41%), Gaps = 25/271 (9%)

Query: 18  RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 77
           ++N ITA    AFAGL +L  L L                           N IT     
Sbjct: 91  QSNQITAISPDAFAGLTSLNSLYLSD-------------------------NPITSISAN 125

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
             S LT L  L +S +++TD        L  L  LNLE   +T     + ++L  L  L+
Sbjct: 126 AFSDLTELSYLHLSYTQLTDISANAFTTLPALVSLNLEFTQITTISAAAFTSLAKLKNLS 185

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           LN  Q++      F+ + +L  L L  N+IT    +    LT L  L L +  I      
Sbjct: 186 LNNNQITSVPESAFTGLTALVSLELDNNQITSISALAFANLTALSYLGLANNRITGISEN 245

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
             TGL  L  L L D Q+ S      + LT L +++L+   I+  S     GL++L  L+
Sbjct: 246 TFTGLTALAALYLLDNQITSISANAFTDLTALTTLSLALNQITSISANAFTGLTTLAGLS 305

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           L   QIT     A T LT L  LDL   +IT
Sbjct: 306 LALNQITSISTNAFTGLTTLAGLDLALNQIT 336



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 123/278 (44%), Gaps = 2/278 (0%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            +GL++L SL +  +N IT+    AF+ L  L  L L               L  L SLN
Sbjct: 103 FAGLTSLNSL-YLSDNPITSISANAFSDLTELSYLHLSYTQLTDISANAFTTLPALVSLN 161

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +++   IT       + L  LK+L ++ +++T    +   GL  L  L L+   +T+   
Sbjct: 162 LEFTQ-ITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTALVSLELDNNQITSISA 220

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            + + L +L YL L   +++      F+ + +L  L L  N+IT         LT L +L
Sbjct: 221 LAFANLTALSYLGLANNRITGISENTFTGLTALAALYLLDNQITSISANAFTDLTALTTL 280

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           +L    I        TGL  L  L L+  Q+ S      +GLT L  ++L+   I+  S 
Sbjct: 281 SLALNQITSISANAFTGLTTLAGLSLALNQITSISTNAFTGLTTLAGLDLALNQITGIST 340

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
               GL++L  L LD  QI      A T LT L +L L
Sbjct: 341 NAFTGLTTLAVLRLDNNQIASISANAFTGLTMLFYLTL 378



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 1/188 (0%)

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
             GL +L  L LSD  + S      S LT L  ++LS+T ++D S      L +L SLNL
Sbjct: 103 FAGLTSLNSLYLSDNPITSISANAFSDLTELSYLHLSYTQLTDISANAFTTLPALVSLNL 162

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
           +  QIT    AA TSL  L +L L   +IT    +       L SLE+    +T      
Sbjct: 163 EFTQITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTALVSLELDNNQITSISALA 222

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
             +L++L+ L L+ N  +T  +    +GLT L +L + +++ITS        L  L +L+
Sbjct: 223 FANLTALSYLGLANN-RITGISENTFTGLTALAALYLLDNQITSISANAFTDLTALTTLS 281

Query: 379 LESCKVTA 386
           L   ++T+
Sbjct: 282 LALNQITS 289


>gi|219821360|gb|ACL37818.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|112959444|gb|ABI27249.1| truncated internalin A [Listeria monocytogenes]
 gi|112959490|gb|ABI27272.1| truncated internalin A [Listeria monocytogenes]
          Length = 542

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 75  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL- 128

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 129 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 178

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 179 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 234

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 235 TGLKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 290

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 291 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 348

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 349 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 186/395 (47%), Gaps = 63/395 (15%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 9   QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 68

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
            +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L     T + + +LS L +
Sbjct: 69  IADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSN--TISDISALSGLTN 124

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 125 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 179

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 180 D--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTK 233

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 234 LTGLKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 289

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 290 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 336

Query: 370 PLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           PL NL  +T   L   + T   +    +  +PN V
Sbjct: 337 PLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 371


>gi|167862030|gb|ACA05714.1| InlA [Listeria monocytogenes]
          Length = 576

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNHIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL- 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 183/387 (47%), Gaps = 64/387 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  + +TD  I  LK L  L  L L
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNHITD--IDPLKNLTNLNRLEL 171

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  
Sbjct: 172 SSN--TISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV-- 224

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L
Sbjct: 225 LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL 280

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + 
Sbjct: 281 ANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISP 334

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N
Sbjct: 335 ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN 386

Query: 355 VSNSRITSAG---LRHLKPLKNLRSLT 378
                  SAG   +  L PL NL  +T
Sbjct: 387 -----WLSAGHNQISDLTPLANLTRIT 408



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 50/190 (26%)

Query: 209 ELSDTQVGSSGLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
           +++  Q    G++ + G   L NL  IN S   ++D  +  L  L+ L  + ++  QI D
Sbjct: 77  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD 134

Query: 266 -TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 324
            T LA LT+LTGLT   LF   ITD     L+N  NL  LE+    ++D           
Sbjct: 135 ITPLANLTNLTGLT---LFNNHITDIDP--LKNLTNLNRLELSSNTISD----------- 178

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESC 382
                              IS L+GL SL     +  S G  +  LKPL NL   TLE  
Sbjct: 179 -------------------ISALSGLTSL-----QQLSFGNQVTDLKPLANLT--TLERL 212

Query: 383 KVTANDIKRL 392
            +++N +  +
Sbjct: 213 DISSNKVSDI 222


>gi|219821294|gb|ACL37774.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|371942086|gb|AEX60855.1| truncated internaline [Listeria monocytogenes]
 gi|371942128|gb|AEX60876.1| truncated internaline [Listeria monocytogenes]
          Length = 491

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL- 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSDGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 186/386 (48%), Gaps = 62/386 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 N-VSNSRITSAGLRHLKPLKNLRSLT 378
           N +S+       +  L PL NL  +T
Sbjct: 386 NWLSDGH---NQISDLTPLANLTRIT 408


>gi|85679236|gb|ABC72034.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 137 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 240

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 241 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 296

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 297 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 352

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 353 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 410

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 411 LNDQAWTNPPVNYKTNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 53  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 112

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 113 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 167

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 168 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 223

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 224 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 278

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 279 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 332

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 333 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 384

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 385 N-----WLSAGHNQISDLTPLANLTRIT 407


>gi|298359764|gb|ADI77461.1| truncated internalin A [Listeria monocytogenes]
 gi|298359862|gb|ADI77510.1| truncated internalin A [Listeria monocytogenes]
 gi|298360070|gb|ADI77614.1| truncated internalin A [Listeria monocytogenes]
 gi|298360108|gb|ADI77633.1| truncated internalin A [Listeria monocytogenes]
 gi|298360174|gb|ADI77666.1| truncated internalin A [Listeria monocytogenes]
 gi|298360196|gb|ADI77677.1| truncated internalin A [Listeria monocytogenes]
 gi|298360268|gb|ADI77713.1| truncated internalin A [Listeria monocytogenes]
 gi|298360290|gb|ADI77724.1| truncated internalin A [Listeria monocytogenes]
 gi|298360536|gb|ADI77847.1| truncated internalin A [Listeria monocytogenes]
 gi|298360608|gb|ADI77883.1| truncated internalin A [Listeria monocytogenes]
 gi|298360658|gb|ADI77908.1| truncated internalin A [Listeria monocytogenes]
 gi|298360684|gb|ADI77921.1| truncated internalin A [Listeria monocytogenes]
          Length = 605

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TGLKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 193/413 (46%), Gaps = 67/413 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 171

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  +  
Sbjct: 172 SSN--TISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV-- 224

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L
Sbjct: 225 LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL 280

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + 
Sbjct: 281 ANNQISN--LAPLSGLTKLTGLKLGANQISN--ISPLAGLTALTNLELNENQLED--ISP 334

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N
Sbjct: 335 ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN 386

Query: 355 VSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
                  SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 387 -----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|298360234|gb|ADI77696.1| internalin A [Listeria monocytogenes]
 gi|298360500|gb|ADI77829.1| internalin A [Listeria monocytogenes]
 gi|298360708|gb|ADI77933.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 163/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  + +L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISSLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNDISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 187/388 (48%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  +++L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISSLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNDISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|22347566|gb|AAM95928.1| internalin A precursor [Listeria monocytogenes]
          Length = 746

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 82  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 136

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 137 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 185

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 186 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 241

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 242 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 297

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 298 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 355

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 356 LNDQAWTNPPVNYKTNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 184/385 (47%), Gaps = 66/385 (17%)

Query: 27  MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD---- 73
           MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD    
Sbjct: 1   MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPL 60

Query: 74  ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEG 116
                           +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE 
Sbjct: 61  KDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLEL 115

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L 
Sbjct: 116 SSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LA 170

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+ 
Sbjct: 171 KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLAN 226

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + 
Sbjct: 227 NQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPIS 280

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N  
Sbjct: 281 NLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-- 330

Query: 357 NSRITSAG---LRHLKPLKNLRSLT 378
                SAG   +  L PL NL  +T
Sbjct: 331 ---WLSAGHNQISDLTPLANLTRIT 352


>gi|219821390|gb|ACL37838.1| internalin A [Listeria monocytogenes]
          Length = 744

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNPPVNYKTNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|112961790|gb|ABI28546.1| internalin A [Listeria monocytogenes]
          Length = 693

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 34  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 88

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 89  F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 137

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 138 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 193

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 194 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 249

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 250 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 307

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 308 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 355



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 166/335 (49%), Gaps = 40/335 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L S
Sbjct: 29  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTS 83

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 84  LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 138

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 139 D--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTK 192

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D     + N KNL  L +    ++
Sbjct: 193 LTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 248

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 249 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 295

Query: 370 PLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           PL NL  +T   L   + T   +    +  +PN V
Sbjct: 296 PLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 330


>gi|386042770|ref|YP_005961575.1| internalin A [Listeria monocytogenes 10403S]
 gi|404409675|ref|YP_006695263.1| internalin A [Listeria monocytogenes SLCC5850]
 gi|403399436|sp|G2K3G6.1|INLA_LISM4 RecName: Full=Internalin-A; Flags: Precursor
 gi|150371722|dbj|BAF65676.1| internalin A [Listeria monocytogenes]
 gi|150371786|dbj|BAF65682.1| internalin A [Listeria monocytogenes]
 gi|150371800|dbj|BAF65689.1| internalin A [Listeria monocytogenes]
 gi|150371810|dbj|BAF65694.1| internalin A [Listeria monocytogenes]
 gi|150371812|dbj|BAF65695.1| internalin A [Listeria monocytogenes]
 gi|150371816|dbj|BAF65697.1| internalin A [Listeria monocytogenes]
 gi|150371826|dbj|BAF65702.1| internalin A [Listeria monocytogenes]
 gi|150371840|dbj|BAF65709.1| internalin A [Listeria monocytogenes]
 gi|150371842|dbj|BAF65710.1| internalin A [Listeria monocytogenes]
 gi|150371862|dbj|BAF65720.1| internalin A [Listeria monocytogenes]
 gi|150371866|dbj|BAF65722.1| internalin A [Listeria monocytogenes]
 gi|167861902|gb|ACA05650.1| InlA [Listeria monocytogenes]
 gi|167861984|gb|ACA05691.1| InlA [Listeria monocytogenes]
 gi|167862000|gb|ACA05699.1| InlA [Listeria monocytogenes]
 gi|167862006|gb|ACA05702.1| InlA [Listeria monocytogenes]
 gi|194239412|emb|CAQ76846.1| internalin A [Listeria monocytogenes]
 gi|223006784|gb|ACM69349.1| internalin A [Listeria monocytogenes]
 gi|298359776|gb|ADI77467.1| internalin A [Listeria monocytogenes]
 gi|298359804|gb|ADI77481.1| internalin A [Listeria monocytogenes]
 gi|298359874|gb|ADI77516.1| internalin A [Listeria monocytogenes]
 gi|298360072|gb|ADI77615.1| internalin A [Listeria monocytogenes]
 gi|298360106|gb|ADI77632.1| internalin A [Listeria monocytogenes]
 gi|298360118|gb|ADI77638.1| internalin A [Listeria monocytogenes]
 gi|298360218|gb|ADI77688.1| internalin A [Listeria monocytogenes]
 gi|298360262|gb|ADI77710.1| internalin A [Listeria monocytogenes]
 gi|298360280|gb|ADI77719.1| internalin A [Listeria monocytogenes]
 gi|298360386|gb|ADI77772.1| internalin A [Listeria monocytogenes]
 gi|298360468|gb|ADI77813.1| internalin A [Listeria monocytogenes]
 gi|298360570|gb|ADI77864.1| internalin A [Listeria monocytogenes]
 gi|298360722|gb|ADI77940.1| internalin A [Listeria monocytogenes]
 gi|302034307|gb|ADK92307.1| internalin A [Listeria monocytogenes]
 gi|302034309|gb|ADK92308.1| internalin A [Listeria monocytogenes]
 gi|302034311|gb|ADK92309.1| internalin A [Listeria monocytogenes]
 gi|302034313|gb|ADK92310.1| internalin A [Listeria monocytogenes]
 gi|302034319|gb|ADK92313.1| internalin A [Listeria monocytogenes]
 gi|302034321|gb|ADK92314.1| internalin A [Listeria monocytogenes]
 gi|302034323|gb|ADK92315.1| internalin A [Listeria monocytogenes]
 gi|302034325|gb|ADK92316.1| internalin A [Listeria monocytogenes]
 gi|345536004|gb|AEO05444.1| internalin A [Listeria monocytogenes 10403S]
 gi|404229501|emb|CBY50905.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC5850]
 gi|443428772|gb|AGC92185.1| internalin A [Listeria monocytogenes]
 gi|443428780|gb|AGC92189.1| internalin A [Listeria monocytogenes]
 gi|443428864|gb|AGC92231.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     +  L+ LT
Sbjct: 110 LTDITPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|298359882|gb|ADI77520.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|167862012|gb|ACA05705.1| InlA [Listeria monocytogenes]
          Length = 797

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|157866007|ref|XP_001681710.1| putative surface antigen protein [Leishmania major strain Friedlin]
 gi|68125008|emb|CAJ02922.1| putative surface antigen protein [Leishmania major strain Friedlin]
          Length = 760

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 1/253 (0%)

Query: 79  LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
            S +T+L  L+I +   +T +  A    ++ L  LNLEG  V+       S + SL  L 
Sbjct: 201 WSRVTSLLELEIVAAGDITGTLPAKWSSIKSLRTLNLEGTQVSGTLPSGWSEMKSLTSLE 260

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           L   Q+S      +S I SL+ LNL   +++         + +L +LNL+   +      
Sbjct: 261 LEGTQVSGTLPPGWSSIKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLEGTQVSGTLPP 320

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
             + + +L  LEL  TQV  +     S + +L ++NL  T +S     +   ++SL++LN
Sbjct: 321 GWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLPPQWVSMASLRTLN 380

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
           L+  Q++ T     + +  LT+L L G +++ S     R  K+L +L + G  ++ +   
Sbjct: 381 LEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNLYLKGTQVSGSLPP 440

Query: 318 HIKDLSSLTLLNL 330
               L+SL  L+L
Sbjct: 441 QWSSLTSLRTLDL 453



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 99/210 (47%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
            S + +L SL++  ++V+ +       ++ L  LNLEG  V+ +      ++ SL  LNL
Sbjct: 250 WSEMKSLTSLELEGTQVSGTLPPGWSSIKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNL 309

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
              Q+S      +S++ SL  L L   +++    +    + +L +LNL+   +       
Sbjct: 310 EGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLPPQ 369

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
              + +L+ L L  TQV  +     S + +L ++ L  T +S     +  G+ SL +L L
Sbjct: 370 WVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNLYL 429

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARIT 288
              Q++ +     +SLT L  LDL G +++
Sbjct: 430 KGTQVSGSLPPQWSSLTSLRTLDLEGTQVS 459



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 118/280 (42%), Gaps = 22/280 (7%)

Query: 30  FAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 88
           ++ + +L  L+LE  T++ G L      +  L +LN++    ++ S       + +L++L
Sbjct: 250 WSEMKSLTSLELEG-TQVSGTLPPGWSSIKSLRTLNLE-GTQVSGSLPPQWVSMASLRTL 307

Query: 89  QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 148
            +  ++V+ +       ++ LT L LEG  V+       S + SL  LNL   Q+S    
Sbjct: 308 NLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLP 367

Query: 149 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
            ++  + SL+ LNL   +++         + +L +L L+   +         G+ +L  L
Sbjct: 368 PQWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNL 427

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
            L  TQV  S     S LT+L +++L  T +S     + + + S ++L L+         
Sbjct: 428 YLKGTQVSGSLPPQWSSLTSLRTLDLEGTQVSGRLPPEWSRMLSAENLQLE--------- 478

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
                     H DL G+   +  A        LR    CG
Sbjct: 479 ----------HCDLSGSLPPEWSAMPRLRLVGLRGNRFCG 508



 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 114/260 (43%), Gaps = 6/260 (2%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMK 59
           +    S + +LTSL       ++      ++ + +L  L+LE  T++ G L      +  
Sbjct: 246 LPSGWSEMKSLTSLELE-GTQVSGTLPPGWSSIKSLRTLNLEG-TQVSGSLPPQWVSMAS 303

Query: 60  LESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           L +LN++         + P  S + +L SL++  ++V+ +       ++ L  LNLEG  
Sbjct: 304 LRTLNLE--GTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQ 361

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           V+ +      ++ SL  LNL   Q+S      +S++ SL  L L   +++       +G+
Sbjct: 362 VSGSLPPQWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGI 421

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            +L +L L    +        + L +L+ L+L  TQV        S + + E++ L    
Sbjct: 422 KSLTNLYLKGTQVSGSLPPQWSSLTSLRTLDLEGTQVSGRLPPEWSRMLSAENLQLEHCD 481

Query: 239 ISDGSLRKLAGLSSLKSLNL 258
           +S     + + +  L+ + L
Sbjct: 482 LSGSLPPEWSAMPRLRLVGL 501


>gi|219821372|gb|ACL37826.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|148607496|gb|ABQ95524.1| InlA [Listeria monocytogenes]
          Length = 730

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|112961667|gb|ABI28464.1| truncated internalin A [Listeria monocytogenes]
          Length = 556

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 89  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL- 142

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 143 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 192

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 193 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 248

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 249 TGLKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 304

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 305 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 362

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 363 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 193/413 (46%), Gaps = 67/413 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 5   AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 64

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L
Sbjct: 65  TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 122

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  +  
Sbjct: 123 SSN--TISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV-- 175

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L
Sbjct: 176 LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL 231

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + 
Sbjct: 232 ANNQISN--LAPLSGLTKLTGLKLGANQISN--ISPLAGLTALTNLELNENQLED--ISP 285

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N
Sbjct: 286 ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN 337

Query: 355 VSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
                  SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 338 -----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 385


>gi|371942138|gb|AEX60881.1| internaline [Listeria monocytogenes]
          Length = 789

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNAPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|126143308|gb|ABN80096.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITPLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITPLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|150371888|dbj|BAF65733.1| internalin A [Listeria monocytogenes]
 gi|150371890|dbj|BAF65734.1| internalin A [Listeria monocytogenes]
          Length = 797

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|422808574|ref|ZP_16856985.1| Internalin A [Listeria monocytogenes FSL J1-208]
 gi|378752188|gb|EHY62773.1| Internalin A [Listeria monocytogenes FSL J1-208]
          Length = 802

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|254410000|ref|ZP_05023780.1| Ras family, putative [Coleofasciculus chthonoplastes PCC 7420]
 gi|196183036|gb|EDX78020.1| Ras family, putative [Coleofasciculus chthonoplastes PCC 7420]
          Length = 1115

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 160/316 (50%), Gaps = 24/316 (7%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLM 58
             E++S L NLT LS  RN     Q  ++ + L+NL +L+L   + T++   +  L  L 
Sbjct: 129 FPESISQLVNLTQLSLSRNQL--TQVPESISQLVNLTQLNLSYNQLTQVPESISQLVNLT 186

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           +L+ L++     + +S    +S L NL  L +S +++T    + +  L  LT L+L G  
Sbjct: 187 QLD-LSVNKLTQVPES----ISQLVNLTQLNLSYNQLTQVSES-ISQLVNLTQLSLSGNK 240

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +T    +S+S L +L  L+L+  +L+    E  S++ +L  L+L  N++T +    +  L
Sbjct: 241 LTQVS-ESISQLVNLTQLSLSGNKLTQ-VPESISQLVNLTQLSLSDNQLT-QVSESISQL 297

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQVGSSGLRHLSGLTNLESINLS 235
            NL  L+L S  +      +++ L NL  L+LS    TQV  S    +S L NL  +NLS
Sbjct: 298 VNLTQLDLSSNQLTQVS-ESISQLVNLTQLDLSSNQLTQVSES----ISQLVNLTQLNLS 352

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
              ++      ++ L +L  LNL   Q+T     +++ L  LT LDLFG +IT+    +L
Sbjct: 353 INKLTQVP-ESISQLVNLTWLNLSDNQLTQVP-ESISQLVNLTQLDLFGNKITEI-PDWL 409

Query: 296 RNFKNLRSLEICGGGL 311
               NL+ L++    L
Sbjct: 410 EELPNLKELDLRQNPL 425


>gi|313485058|gb|ADR53003.1| InlA [Listeria monocytogenes]
          Length = 765

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|290980890|ref|XP_002673164.1| predicted protein [Naegleria gruberi]
 gi|284086746|gb|EFC40420.1| predicted protein [Naegleria gruberi]
          Length = 287

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 130/270 (48%), Gaps = 4/270 (1%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           L +LT+LN+    +      S+S L  L  L  +  Q+ + G    S++  L  L+L  N
Sbjct: 16  LSQLTILNISNNQIGDLGAQSISELKLLKELFADNNQIGNTGVSFISQLKQLLKLSLMGN 75

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
              +E +  +  +  L  L++ +  I ++G   +  +  L+ L +S TQ+GS G + +SG
Sbjct: 76  YFDNEGVYSISKMDQLTELDIGTNKIDEKGAQYIGEMKQLRKLFISGTQIGSEGAKAISG 135

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           L NL ++N+ ++ I     + + G+  L  L +   +I       +  L  LT L + G 
Sbjct: 136 LPNLTNLNIGYSQIGIEGAKYVCGMHQLTQLGIGNSRIGVETAKLIGQLKHLTFLVIEGN 195

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELI 344
            I D GA Y+   K L+ L I  G +   G ++I  L  LT L++S  CN  D      I
Sbjct: 196 NIGDEGAKYISEAK-LKKLVISNGRIGGEGAQYIAKLHQLTNLDIS--CNNVDTAGARSI 252

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
           S L  L  L++S ++I S G R +K +  L
Sbjct: 253 SKLPNLTILDISVNKIGSGGARLIKGMTQL 282



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 2/211 (0%)

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
             ++G    SK+  L  L++G N+I ++   ++  +  L  L +    IG EG   ++GL
Sbjct: 77  FDNEGVYSISKMDQLTELDIGTNKIDEKGAQYIGEMKQLRKLFISGTQIGSEGAKAISGL 136

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
            NL  L +  +Q+G  G +++ G+  L  + +  + I   + + +  L  L  L ++   
Sbjct: 137 PNLTNLNIGYSQIGIEGAKYVCGMHQLTQLGIGNSRIGVETAKLIGQLKHLTFLVIEGNN 196

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
           I D G A   S   L  L +   RI   GA Y+     L +L+I    +  AG + I  L
Sbjct: 197 IGDEG-AKYISEAKLKKLVISNGRIGGEGAQYIAKLHQLTNLDISCNNVDTAGARSISKL 255

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            +LT+L++S N  +      LI G+T L  +
Sbjct: 256 PNLTILDISVN-KIGSGGARLIKGMTQLTKV 285


>gi|290970032|ref|XP_002668015.1| predicted protein [Naegleria gruberi]
 gi|284081037|gb|EFC35271.1| predicted protein [Naegleria gruberi]
          Length = 224

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 102/197 (51%), Gaps = 2/197 (1%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L  L++ +  IG+EG   +  +  L  L++    + S GL H++ L  L+ + + + 
Sbjct: 1   MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            + DG+ + ++ +  L +LN++   I + G   ++ L  +T+L++    I + G  ++  
Sbjct: 61  SVGDGA-KYISEMKQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHISR 119

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
            K L  L I    + D GV  +  L  LT L++S++  + +K  +L+S +  L  L++S 
Sbjct: 120 MKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHI-IGEKGTKLLSEMEQLTHLDISE 178

Query: 358 SRITSAGLRHLKPLKNL 374
             I   G++H+  +KNL
Sbjct: 179 CCIQYEGVKHISEMKNL 195



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 1/192 (0%)

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           + ++G +   ++  L  L++G N+I  + L H+  L  L+ L +    +GD G   ++ +
Sbjct: 14  IGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYNSVGD-GAKYISEM 72

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
             L  L ++   +   G + +S L  + ++N+SF  I +  L  ++ +  L  LN+ +  
Sbjct: 73  KQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHISRMKQLTHLNIQSNN 132

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
           I DTG+  L  L  LT LD+    I + G   L   + L  L+I    +   GVKHI ++
Sbjct: 133 IDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDISECCIQYEGVKHISEM 192

Query: 323 SSLTLLNLSQNC 334
            +LT  N+  NC
Sbjct: 193 KNLTYPNICLNC 204



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 107/225 (47%), Gaps = 5/225 (2%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           +++LT L++    +       +  +  L YL++ R  ++  G    + +  LK L + +N
Sbjct: 1   MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60

Query: 166 EITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
            + D  + +  +K LTNL   N+++  I ++G   ++ L  +  L +S  ++G+ GL H+
Sbjct: 61  SVGDGAKYISEMKQLTNL---NVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHI 117

Query: 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
           S +  L  +N+    I D  +  L GL  L +L++    I + G   L+ +  LTHLD+ 
Sbjct: 118 SRMKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDIS 177

Query: 284 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
              I   G  ++   KNL    IC       G K + ++ +L  L
Sbjct: 178 ECCIQYEGVKHISEMKNLTYPNICLNCFGKGGAKCLCEMKNLIKL 222



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 27/249 (10%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           +  LT LS   NN I  +G K    +  L  LD+ R        +N KGL          
Sbjct: 1   MRQLTCLSVSNNN-IGNEGFKFICEMKQLTYLDVGR------NDINSKGL---------- 43

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N IT+ D         LK L+I  + V D G  Y+  +++LT LN+    +       +
Sbjct: 44  -NHITNLD--------KLKDLRIYYNSVGD-GAKYISEMKQLTNLNVNTACINEKGAKFI 93

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           S L  +  LN++  ++ + G E  S++  L  LN+  N I D  +  L GL  L +L++ 
Sbjct: 94  SELPLVTNLNISFNEIGNQGLEHISRMKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDIS 153

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
              IG++G   L+ +  L  L++S+  +   G++H+S + NL   N+       G  + L
Sbjct: 154 KHIIGEKGTKLLSEMEQLTHLDISECCIQYEGVKHISEMKNLTYPNICLNCFGKGGAKCL 213

Query: 248 AGLSSLKSL 256
             + +L  L
Sbjct: 214 CEMKNLIKL 222



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 2/147 (1%)

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           +  L  L++    I + G   +  +  LT+LD+    I   G  ++ N   L+ L I   
Sbjct: 1   MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
            + D G K+I ++  LT LN++  C + +K  + IS L  + +LN+S + I + GL H+ 
Sbjct: 61  SVGD-GAKYISEMKQLTNLNVNTAC-INEKGAKFISELPLVTNLNISFNEIGNQGLEHIS 118

Query: 370 PLKNLRSLTLESCKVTANDIKRLQSRD 396
            +K L  L ++S  +    +  L   D
Sbjct: 119 RMKQLTHLNIQSNNIDDTGVYFLHGLD 145


>gi|167861888|gb|ACA05643.1| InlA [Listeria monocytogenes]
 gi|194326163|emb|CAQ77240.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|219821333|gb|ACL37800.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLTNLTGLTLF-NNQIT--DINPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVKYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 189/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLTNLTGLTLFNNQITD-----INPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +K   +  +PN V
Sbjct: 341 TPLANLTRITQLGLNDQEWTNPPVKYKVNVSIPNTV 376


>gi|115504803|ref|XP_001219194.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
 gi|83642676|emb|CAJ16709.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 735

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 189/456 (41%), Gaps = 78/456 (17%)

Query: 3   ENLSG---LSNLTSL-----SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 54
           E LSG   LSNL SL      +R+N   T       A L  L  LDL   +  +  L N+
Sbjct: 288 EGLSGVAWLSNLESLGDLDVQWRKNLKHTGD---VLACLPLLRVLDLSGTSISNESLWNI 344

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLN 113
                L  L++ +C  +   D+ P+S +  L+ L +  C+ +T+ G+  L  L  L +LN
Sbjct: 345 SESKLLRRLDLSFCGGV--KDISPISDIVTLEELNLKGCTSITE-GVDKLGNLVNLHILN 401

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQ-----------------------LSDDGCEK 150
           +   P+ +  L ++S++ SL  L+L+ C                           +G   
Sbjct: 402 MSNTPLQSGFLYNISSIESLVELDLSSCWGVASLDSSVQTAVRMRKGSYPLARHIEGINA 461

Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
             ++  L++LN+    +TDECL  L+   +L  LNL  C      L +++ L ++K LE 
Sbjct: 462 LGRLPKLRLLNMSSTPVTDECLHGLQMCKSLVWLNLSLCA----NLTDVSPLSSVKTLEE 517

Query: 211 SDT------QVGSSGLRHLSGLTNLESINLSFTGISD----------GSLRKLAGLSSLK 254
            D       + G+  LR L     L  ++L  T I+D          G + ++ G   + 
Sbjct: 518 VDLGCCGNLKWGAGSLRRLP---QLRILDLKNTVITDHCLGDVTYGGGVVSRMLGRCGMA 574

Query: 255 SLNLDARQITDTG---------------LAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
            L+     I   G               +A LTS+T L  L   G R    G   L    
Sbjct: 575 DLSFSRWSIRRGGNLVRLDLSSCWGLTDIAHLTSITTLEELRFTGCRNLKDGVDALGQLP 634

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
            L  L++ G  +TD  ++ +    SL  LN+S   NLTD  +  +S ++ L  LN+  S+
Sbjct: 635 VLHLLDLSGTSITDDSLQGLSTCRSLVTLNISSCANLTD--VSPLSRISSLEELNLQKSK 692

Query: 360 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 395
               G+  L  L  L  + L     +    + L+ R
Sbjct: 693 HIRRGIDELVSLPRLYLVYLCRADFSRGVAEELEKR 728



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 170/364 (46%), Gaps = 40/364 (10%)

Query: 53  NLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 111
           +L+ +    SLN + +  C    D+  LSG + L  L++      D  +++ K L++L  
Sbjct: 82  DLEFIGNYASLNKLHFIECSGSCDLGMLSGHSFLSELRVD----VDGEVSHYKALRELPS 137

Query: 112 LN---LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L    L    +T      +  + +L  L L R  L+    E  +++  L+ L+L    + 
Sbjct: 138 LRTLWLRNSNMTLTDFFHVGEVDTLESLTL-RGALNFKCLEAVARLPRLRALDLSETLVN 196

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD----TQVGS-SGLRHL 223
           D+CL  +     L+ L L SC    + +  LT + +L+ L LS      +VG+   L HL
Sbjct: 197 DKCLHAISACKTLQQLGLSSCKRLRD-VSPLTQIASLEELNLSHCENLKEVGALYRLSHL 255

Query: 224 SGLTNLESINLSF---------TGISD------GSLRKLAGLSSLKSL-NLDA---RQIT 264
             L +L  ++L++         TG+++        L  +A LS+L+SL +LD    + + 
Sbjct: 256 FRL-DLRGVHLTYRVVYSLSKCTGLTELYVSSCEGLSGVAWLSNLESLGDLDVQWRKNLK 314

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS 323
            TG   L  L  L  LDL G  I++     +   K LR L++   GG+ D  +  I D+ 
Sbjct: 315 HTG-DVLACLPLLRVLDLSGTSISNESLWNISESKLLRRLDLSFCGGVKD--ISPISDIV 371

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           +L  LNL + C    + ++ +  L  L  LN+SN+ + S  L ++  +++L  L L SC 
Sbjct: 372 TLEELNL-KGCTSITEGVDKLGNLVNLHILNMSNTPLQSGFLYNISSIESLVELDLSSCW 430

Query: 384 VTAN 387
             A+
Sbjct: 431 GVAS 434


>gi|371942126|gb|AEX60875.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|219821291|gb|ACL37772.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNKVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNPPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    +++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 SLQQLSFGN-KVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|313485079|gb|ADR53010.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 185/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|284800720|ref|YP_003412585.1| Internalin A [Listeria monocytogenes 08-5578]
 gi|284993906|ref|YP_003415674.1| Internalin A [Listeria monocytogenes 08-5923]
 gi|130774827|gb|ABO32426.1| InlA [Listeria monocytogenes]
 gi|167862038|gb|ACA05718.1| InlA [Listeria monocytogenes]
 gi|194326145|emb|CAQ77231.1| internalin A [Listeria monocytogenes]
 gi|194326165|emb|CAQ77241.1| internalin A [Listeria monocytogenes]
 gi|284056282|gb|ADB67223.1| Internalin A [Listeria monocytogenes 08-5578]
 gi|284059373|gb|ADB70312.1| Internalin A [Listeria monocytogenes 08-5923]
 gi|298359730|gb|ADI77444.1| internalin A [Listeria monocytogenes]
 gi|298359786|gb|ADI77472.1| internalin A [Listeria monocytogenes]
 gi|298359904|gb|ADI77531.1| internalin A [Listeria monocytogenes]
 gi|298359978|gb|ADI77568.1| internalin A [Listeria monocytogenes]
 gi|298360068|gb|ADI77613.1| internalin A [Listeria monocytogenes]
 gi|298360228|gb|ADI77693.1| internalin A [Listeria monocytogenes]
 gi|298360452|gb|ADI77805.1| internalin A [Listeria monocytogenes]
 gi|298360556|gb|ADI77857.1| internalin A [Listeria monocytogenes]
 gi|298360576|gb|ADI77867.1| internalin A [Listeria monocytogenes]
 gi|298360600|gb|ADI77879.1| internalin A [Listeria monocytogenes]
 gi|298360678|gb|ADI77918.1| internalin A [Listeria monocytogenes]
 gi|443428872|gb|AGC92235.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|112959446|gb|ABI27250.1| internalin A [Listeria monocytogenes]
 gi|112959466|gb|ABI27260.1| internalin A [Listeria monocytogenes]
 gi|112959470|gb|ABI27262.1| internalin A [Listeria monocytogenes]
 gi|112959474|gb|ABI27264.1| internalin A [Listeria monocytogenes]
 gi|112959476|gb|ABI27265.1| internalin A [Listeria monocytogenes]
 gi|112959478|gb|ABI27266.1| internalin A [Listeria monocytogenes]
 gi|112959484|gb|ABI27269.1| internalin A [Listeria monocytogenes]
 gi|112959486|gb|ABI27270.1| internalin A [Listeria monocytogenes]
 gi|112959492|gb|ABI27273.1| internalin A [Listeria monocytogenes]
 gi|112959494|gb|ABI27274.1| internalin A [Listeria monocytogenes]
 gi|112959504|gb|ABI27279.1| internalin A [Listeria monocytogenes]
 gi|112959516|gb|ABI27285.1| internalin A [Listeria monocytogenes]
 gi|112959532|gb|ABI27293.1| internalin A [Listeria monocytogenes]
 gi|112959534|gb|ABI27294.1| internalin A [Listeria monocytogenes]
 gi|112959540|gb|ABI27297.1| internalin A [Listeria monocytogenes]
 gi|112959544|gb|ABI27299.1| internalin A [Listeria monocytogenes]
 gi|112959550|gb|ABI27302.1| internalin A [Listeria monocytogenes]
 gi|112959554|gb|ABI27304.1| internalin A [Listeria monocytogenes]
 gi|112959558|gb|ABI27306.1| internalin A [Listeria monocytogenes]
 gi|112959560|gb|ABI27307.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 75  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 129

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 130 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 178

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 179 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 234

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 235 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 290

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 291 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 348

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 349 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 9   QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 68

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 69  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 123

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 124 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 178

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 179 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 232

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 233 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 288

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 289 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 335

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 336 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 371


>gi|22347562|gb|AAM95926.1| internalin A precursor [Listeria monocytogenes]
          Length = 744

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 82  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 136

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 137 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 185

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 186 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 241

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 242 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 297

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 298 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 355

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 356 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 193/411 (46%), Gaps = 69/411 (16%)

Query: 27  MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD---- 73
           MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD    
Sbjct: 1   MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPL 60

Query: 74  ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEG 116
                           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE 
Sbjct: 61  KDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLEL 115

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L 
Sbjct: 116 SSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LA 170

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+ 
Sbjct: 171 KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLAN 226

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + 
Sbjct: 227 NQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPIS 280

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N  
Sbjct: 281 NLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-- 330

Query: 357 NSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
                SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 331 ---WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 378


>gi|219821318|gb|ACL37790.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|112959452|gb|ABI27253.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 75  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 129

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 130 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 178

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 179 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 234

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 235 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 290

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 291 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 348

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 349 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 187/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 9   QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 68

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 69  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 123

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 124 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 178

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 179 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 232

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D     + N KNL  L +    +
Sbjct: 233 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 288

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 289 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 335

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 336 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 371


>gi|112959506|gb|ABI27280.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 75  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 129

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 130 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 178

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 179 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 234

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 235 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 290

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 291 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 348

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 349 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 9   QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 68

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 69  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 123

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 124 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 178

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 179 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 232

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 233 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 288

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 289 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 335

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 336 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 371


>gi|298360230|gb|ADI77694.1| internalin A [Listeria monocytogenes]
 gi|298360588|gb|ADI77873.1| internalin A [Listeria monocytogenes]
 gi|298360606|gb|ADI77882.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|219821261|gb|ACL37752.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|112961619|gb|ABI28432.1| internalin A [Listeria monocytogenes]
 gi|112961637|gb|ABI28444.1| internalin A [Listeria monocytogenes]
 gi|112961655|gb|ABI28456.1| internalin A [Listeria monocytogenes]
 gi|112961658|gb|ABI28458.1| internalin A [Listeria monocytogenes]
 gi|112961766|gb|ABI28530.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 89  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 143

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 144 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 192

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 193 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 248

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 249 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 304

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 305 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 362

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 363 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 5   AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 64

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 65  TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 119

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 120 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 175

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 176 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 230

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 231 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 284

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 285 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 336

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 337 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 385


>gi|112961694|gb|ABI28482.1| internalin A [Listeria monocytogenes]
 gi|112961706|gb|ABI28490.1| internalin A [Listeria monocytogenes]
 gi|112961763|gb|ABI28528.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 89  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 143

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 144 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 192

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 193 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 248

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 249 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 304

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 305 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 362

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 363 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 5   AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 64

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 65  TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 119

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 120 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 175

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 176 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 230

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 231 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 285

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 286 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 336

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 337 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 385


>gi|22347548|gb|AAM95919.1| internalin A precursor [Listeria monocytogenes]
 gi|22347558|gb|AAM95924.1| internalin A precursor [Listeria monocytogenes]
 gi|22347560|gb|AAM95925.1| internalin A precursor [Listeria monocytogenes]
          Length = 744

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 82  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 136

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 137 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 185

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 186 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 241

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 242 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 297

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 298 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 355

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 356 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 193/411 (46%), Gaps = 69/411 (16%)

Query: 27  MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD---- 73
           MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD    
Sbjct: 1   MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPL 60

Query: 74  ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEG 116
                           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE 
Sbjct: 61  KDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLEL 115

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L 
Sbjct: 116 SSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LA 170

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+ 
Sbjct: 171 KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLAN 226

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + 
Sbjct: 227 NQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPIS 280

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N  
Sbjct: 281 NLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-- 330

Query: 357 NSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
                SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 331 ---WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 378


>gi|85679230|gb|ABC72031.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 137 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 240

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 241 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 296

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 297 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 352

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 353 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 410

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 411 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 53  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 112

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 113 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 167

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 168 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 223

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 224 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 278

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 279 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 332

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 333 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 384

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 385 N-----WLSAGHNQISDLTPLANLTRIT 407


>gi|167861940|gb|ACA05669.1| InlA [Listeria monocytogenes]
 gi|167861954|gb|ACA05676.1| InlA [Listeria monocytogenes]
 gi|194239400|emb|CAQ76840.1| internalin A [Listeria monocytogenes]
 gi|298360640|gb|ADI77899.1| truncated internalin A [Listeria monocytogenes]
 gi|298360688|gb|ADI77923.1| truncated internalin A [Listeria monocytogenes]
 gi|443428860|gb|AGC92229.1| truncated internalin A [Listeria monocytogenes]
 gi|443428878|gb|AGC92238.1| truncated internalin A [Listeria monocytogenes]
          Length = 684

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|371942142|gb|AEX60883.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|298360648|gb|ADI77903.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|290991576|ref|XP_002678411.1| predicted protein [Naegleria gruberi]
 gi|284092023|gb|EFC45667.1| predicted protein [Naegleria gruberi]
          Length = 153

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 75/145 (51%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           LN+G+NEIT E    +  +  L SL + +  I D+G   L+ +  L  L +S+ +    G
Sbjct: 7   LNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNNETSDEG 66

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
            +H+S +  L S+ +    I D   + ++ +  L SLN+   +I+D G   ++ +  LT 
Sbjct: 67  AKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISEMKQLTL 126

Query: 280 LDLFGARITDSGAAYLRNFKNLRSL 304
           L ++   I+D GA YL   K L SL
Sbjct: 127 LYIYNNEISDKGAKYLSEMKQLTSL 151



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 1/152 (0%)

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           +  L S+N+ +  I+    + ++ +  L SL +   +I+D G   L+ +  LT L++   
Sbjct: 1   MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
             +D GA ++   K L SL I    + D G K+I ++  LT LN+  N  ++D+  + IS
Sbjct: 61  ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYN-EISDEGAKYIS 119

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
            +  L  L + N+ I+  G ++L  +K L SL
Sbjct: 120 EMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 1/152 (0%)

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
           +  L  L +   ++   G + +S +  L S+ +    ISD   + L+ +  L SLN+   
Sbjct: 1   MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           + +D G   ++ +  LT L ++  +I D GA Y+   K L SL I    ++D G K+I +
Sbjct: 61  ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
           +  LTLL +  N  ++DK  + +S +  L SL
Sbjct: 121 MKQLTLLYIYNN-EISDKGAKYLSEMKQLTSL 151



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L SLN+    I  EG   ++ +  L  L + + ++   G ++LS +  L S+N+S  
Sbjct: 1   MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
             SD   + ++ +  L SL +   QI D G   ++ +  LT L++    I+D GA Y+  
Sbjct: 61  ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
            K L  L I    ++D G K++ ++  LT L
Sbjct: 121 MKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 1/152 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SLNI + N IT    K +S +  L SL I  ++++D G  YL  +++LT LN+  
Sbjct: 1   MKQLTSLNIGY-NEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSN 59

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              +      +S +  L  L +   Q+ D G +  S++  L  LN+G+NEI+DE   ++ 
Sbjct: 60  NETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYIS 119

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
            +  L  L + +  I D+G   L+ +  L  L
Sbjct: 120 EMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 24/175 (13%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           +++LT LN+    +T      +S +  L  L +   ++SD G +  S++  L  LN+  N
Sbjct: 1   MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           E +DE   H+  +  L SL                         + D Q+G  G +++S 
Sbjct: 61  ETSDEGAKHISEMKQLTSLY------------------------IYDNQIGDKGAKYISE 96

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           +  L S+N+ +  ISD   + ++ +  L  L +   +I+D G   L+ +  LT L
Sbjct: 97  MKQLTSLNIGYNEISDEGAKYISEMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 76/151 (50%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           +  L SL I  +++T  G  ++  +++LT L +    ++      LS +  L  LN++  
Sbjct: 1   MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           + SD+G +  S++  L  L +  N+I D+   ++  +  L SLN+    I DEG   ++ 
Sbjct: 61  ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
           +  L  L + + ++   G ++LS +  L S+
Sbjct: 121 MKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151


>gi|219821330|gb|ACL37798.1| internalin A [Listeria monocytogenes]
 gi|219821348|gb|ACL37810.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAAHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 183/369 (49%), Gaps = 60/369 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLN--LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
           +D     I  +SSLT L      N  ++D  +  ++ LT +  L+ ++++I+      L 
Sbjct: 294 SD-----ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAAHNQIS-----DLT 341

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 342 PLANLTRIT 350


>gi|254825753|ref|ZP_05230754.1| internalin A [Listeria monocytogenes FSL J1-194]
 gi|255521302|ref|ZP_05388539.1| internalin A [Listeria monocytogenes FSL J1-175]
 gi|130774771|gb|ABO32400.1| InlA [Listeria monocytogenes]
 gi|130774777|gb|ABO32403.1| InlA [Listeria monocytogenes]
 gi|130774779|gb|ABO32404.1| InlA [Listeria monocytogenes]
 gi|150371874|dbj|BAF65726.1| internalin A [Listeria monocytogenes]
 gi|150371876|dbj|BAF65727.1| internalin A [Listeria monocytogenes]
 gi|223006790|gb|ACM69352.1| internalin A [Listeria monocytogenes]
 gi|290350838|dbj|BAI78340.1| internalin A [Listeria monocytogenes]
 gi|293594997|gb|EFG02758.1| internalin A [Listeria monocytogenes FSL J1-194]
 gi|298359742|gb|ADI77450.1| internalin A [Listeria monocytogenes]
 gi|298359744|gb|ADI77451.1| internalin A [Listeria monocytogenes]
 gi|298359756|gb|ADI77457.1| internalin A [Listeria monocytogenes]
 gi|298359790|gb|ADI77474.1| internalin A [Listeria monocytogenes]
 gi|298359872|gb|ADI77515.1| internalin A [Listeria monocytogenes]
 gi|298359880|gb|ADI77519.1| internalin A [Listeria monocytogenes]
 gi|298359942|gb|ADI77550.1| internalin A [Listeria monocytogenes]
 gi|298359946|gb|ADI77552.1| internalin A [Listeria monocytogenes]
 gi|298360032|gb|ADI77595.1| internalin A [Listeria monocytogenes]
 gi|298360064|gb|ADI77611.1| internalin A [Listeria monocytogenes]
 gi|298360114|gb|ADI77636.1| internalin A [Listeria monocytogenes]
 gi|298360202|gb|ADI77680.1| internalin A [Listeria monocytogenes]
 gi|298360282|gb|ADI77720.1| internalin A [Listeria monocytogenes]
 gi|298360284|gb|ADI77721.1| internalin A [Listeria monocytogenes]
 gi|298360314|gb|ADI77736.1| internalin A [Listeria monocytogenes]
 gi|298360330|gb|ADI77744.1| internalin A [Listeria monocytogenes]
 gi|298360346|gb|ADI77752.1| internalin A [Listeria monocytogenes]
 gi|298360410|gb|ADI77784.1| internalin A [Listeria monocytogenes]
 gi|298360420|gb|ADI77789.1| internalin A [Listeria monocytogenes]
 gi|298360440|gb|ADI77799.1| internalin A [Listeria monocytogenes]
 gi|298360454|gb|ADI77806.1| internalin A [Listeria monocytogenes]
 gi|298360470|gb|ADI77814.1| internalin A [Listeria monocytogenes]
 gi|298360494|gb|ADI77826.1| internalin A [Listeria monocytogenes]
 gi|298360506|gb|ADI77832.1| internalin A [Listeria monocytogenes]
 gi|298360604|gb|ADI77881.1| internalin A [Listeria monocytogenes]
 gi|298360610|gb|ADI77884.1| internalin A [Listeria monocytogenes]
 gi|298360612|gb|ADI77885.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|130774791|gb|ABO32410.1| InlA [Listeria monocytogenes]
 gi|298360240|gb|ADI77699.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|371942116|gb|AEX60870.1| internaline [Listeria monocytogenes]
          Length = 789

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|112961622|gb|ABI28434.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 89  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 143

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 144 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 192

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 193 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 248

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 249 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 304

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 305 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 362

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 363 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 5   AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 64

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 65  TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 119

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 120 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 175

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 176 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 230

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 231 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 284

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 285 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 336

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 337 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 385


>gi|313485048|gb|ADR52999.1| InlA [Listeria monocytogenes]
 gi|313485083|gb|ADR53012.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|298359892|gb|ADI77525.1| internalin A [Listeria monocytogenes]
 gi|298360422|gb|ADI77790.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|219821375|gb|ACL37828.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|167861900|gb|ACA05649.1| InlA [Listeria monocytogenes]
 gi|194326161|emb|CAQ77239.1| internalin A [Listeria monocytogenes]
 gi|298360364|gb|ADI77761.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     +  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|194239392|emb|CAQ76836.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|219821351|gb|ACL37812.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVKYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 189/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +K   +  +PN V
Sbjct: 341 TPLANLTRITQLGLNDQEWTNPPVKYKVNVSIPNTV 376


>gi|226223065|ref|YP_002757172.1| Internalin A [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|386731210|ref|YP_006204706.1| internalin A [Listeria monocytogenes 07PF0776]
 gi|406703224|ref|YP_006753578.1| internalin A (LPXTG motif) [Listeria monocytogenes L312]
 gi|167861892|gb|ACA05645.1| InlA [Listeria monocytogenes]
 gi|167861914|gb|ACA05656.1| InlA [Listeria monocytogenes]
 gi|167861978|gb|ACA05688.1| InlA [Listeria monocytogenes]
 gi|194239396|emb|CAQ76838.1| internalin A [Listeria monocytogenes]
 gi|225875527|emb|CAS04230.1| Internalin A [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|298359780|gb|ADI77469.1| internalin A [Listeria monocytogenes]
 gi|384389968|gb|AFH79038.1| internalin A [Listeria monocytogenes 07PF0776]
 gi|406360254|emb|CBY66527.1| internalin A (LPXTG motif) [Listeria monocytogenes L312]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|112961778|gb|ABI28538.1| internalin A [Listeria monocytogenes]
          Length = 696

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 34  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 88

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 89  F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 137

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 138 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 193

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 194 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 249

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 250 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 307

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 308 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 355



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 166/335 (49%), Gaps = 40/335 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L +
Sbjct: 29  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTN 83

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 84  LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 138

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 139 D--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTK 192

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D     + N KNL  L +    ++
Sbjct: 193 LTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 248

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 249 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 295

Query: 370 PLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           PL NL  +T   L   + T   +    +  +PN V
Sbjct: 296 PLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 330


>gi|112961787|gb|ABI28544.1| internalin A [Listeria monocytogenes]
          Length = 696

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 34  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 88

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 89  F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 137

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 138 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 193

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 194 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 249

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 250 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 307

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 308 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 355



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 166/335 (49%), Gaps = 40/335 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L +
Sbjct: 29  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTN 83

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 84  LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 138

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 139 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 192

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D     + N KNL  L +    ++
Sbjct: 193 LTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 248

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 249 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 295

Query: 370 PLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           PL NL  +T   L   + T   +    +  +PN V
Sbjct: 296 PLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 330


>gi|298359924|gb|ADI77541.1| internalin A [Listeria monocytogenes]
 gi|298359926|gb|ADI77542.1| internalin A [Listeria monocytogenes]
 gi|298360172|gb|ADI77665.1| internalin A [Listeria monocytogenes]
 gi|298360388|gb|ADI77773.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|298359722|gb|ADI77440.1| truncated internalin A [Listeria monocytogenes]
 gi|298359752|gb|ADI77455.1| truncated internalin A [Listeria monocytogenes]
 gi|298359762|gb|ADI77460.1| truncated internalin A [Listeria monocytogenes]
 gi|298359812|gb|ADI77485.1| truncated internalin A [Listeria monocytogenes]
 gi|298359814|gb|ADI77486.1| truncated internalin A [Listeria monocytogenes]
 gi|298359858|gb|ADI77508.1| truncated internalin A [Listeria monocytogenes]
 gi|298359886|gb|ADI77522.1| truncated internalin A [Listeria monocytogenes]
 gi|298359900|gb|ADI77529.1| truncated internalin A [Listeria monocytogenes]
 gi|298359906|gb|ADI77532.1| truncated internalin A [Listeria monocytogenes]
 gi|298359912|gb|ADI77535.1| truncated internalin A [Listeria monocytogenes]
 gi|298359944|gb|ADI77551.1| truncated internalin A [Listeria monocytogenes]
 gi|298359980|gb|ADI77569.1| truncated internalin A [Listeria monocytogenes]
 gi|298359990|gb|ADI77574.1| truncated internalin A [Listeria monocytogenes]
 gi|298359992|gb|ADI77575.1| truncated internalin A [Listeria monocytogenes]
 gi|298359994|gb|ADI77576.1| truncated internalin A [Listeria monocytogenes]
 gi|298360008|gb|ADI77583.1| truncated internalin A [Listeria monocytogenes]
 gi|298360026|gb|ADI77592.1| truncated internalin A [Listeria monocytogenes]
 gi|298360060|gb|ADI77609.1| truncated internalin A [Listeria monocytogenes]
 gi|298360078|gb|ADI77618.1| truncated internalin A [Listeria monocytogenes]
 gi|298360082|gb|ADI77620.1| truncated internalin A [Listeria monocytogenes]
 gi|298360096|gb|ADI77627.1| truncated internalin A [Listeria monocytogenes]
 gi|298360142|gb|ADI77650.1| truncated internalin A [Listeria monocytogenes]
 gi|298360144|gb|ADI77651.1| truncated internalin A [Listeria monocytogenes]
 gi|298360146|gb|ADI77652.1| truncated internalin A [Listeria monocytogenes]
 gi|298360160|gb|ADI77659.1| truncated internalin A [Listeria monocytogenes]
 gi|298360192|gb|ADI77675.1| truncated internalin A [Listeria monocytogenes]
 gi|298360252|gb|ADI77705.1| truncated internalin A [Listeria monocytogenes]
 gi|298360274|gb|ADI77716.1| truncated internalin A [Listeria monocytogenes]
 gi|298360276|gb|ADI77717.1| truncated internalin A [Listeria monocytogenes]
 gi|298360296|gb|ADI77727.1| truncated internalin A [Listeria monocytogenes]
 gi|298360304|gb|ADI77731.1| truncated internalin A [Listeria monocytogenes]
 gi|298360316|gb|ADI77737.1| truncated internalin A [Listeria monocytogenes]
 gi|298360320|gb|ADI77739.1| truncated internalin A [Listeria monocytogenes]
 gi|298360336|gb|ADI77747.1| truncated internalin A [Listeria monocytogenes]
 gi|298360342|gb|ADI77750.1| truncated internalin A [Listeria monocytogenes]
 gi|298360348|gb|ADI77753.1| truncated internalin A [Listeria monocytogenes]
 gi|298360374|gb|ADI77766.1| truncated internalin A [Listeria monocytogenes]
 gi|298360380|gb|ADI77769.1| truncated internalin A [Listeria monocytogenes]
 gi|298360404|gb|ADI77781.1| truncated internalin A [Listeria monocytogenes]
 gi|298360414|gb|ADI77786.1| truncated internalin A [Listeria monocytogenes]
 gi|298360426|gb|ADI77792.1| truncated internalin A [Listeria monocytogenes]
 gi|298360458|gb|ADI77808.1| truncated internalin A [Listeria monocytogenes]
 gi|298360464|gb|ADI77811.1| truncated internalin A [Listeria monocytogenes]
 gi|298360488|gb|ADI77823.1| truncated internalin A [Listeria monocytogenes]
 gi|298360492|gb|ADI77825.1| truncated internalin A [Listeria monocytogenes]
 gi|298360518|gb|ADI77838.1| truncated internalin A [Listeria monocytogenes]
 gi|298360538|gb|ADI77848.1| truncated internalin A [Listeria monocytogenes]
 gi|298360562|gb|ADI77860.1| truncated internalin A [Listeria monocytogenes]
 gi|298360594|gb|ADI77876.1| truncated internalin A [Listeria monocytogenes]
 gi|298360616|gb|ADI77887.1| truncated internalin A [Listeria monocytogenes]
 gi|298360654|gb|ADI77906.1| truncated internalin A [Listeria monocytogenes]
 gi|298360660|gb|ADI77909.1| truncated internalin A [Listeria monocytogenes]
 gi|298360668|gb|ADI77913.1| truncated internalin A [Listeria monocytogenes]
 gi|298360690|gb|ADI77924.1| truncated internalin A [Listeria monocytogenes]
 gi|298360696|gb|ADI77927.1| truncated internalin A [Listeria monocytogenes]
 gi|298360720|gb|ADI77939.1| truncated internalin A [Listeria monocytogenes]
 gi|443428784|gb|AGC92191.1| truncated internalin A [Listeria monocytogenes]
 gi|443428786|gb|AGC92192.1| truncated internalin A [Listeria monocytogenes]
 gi|443428790|gb|AGC92194.1| truncated internalin A [Listeria monocytogenes]
 gi|443428794|gb|AGC92196.1| truncated internalin A [Listeria monocytogenes]
 gi|443428808|gb|AGC92203.1| truncated internalin A [Listeria monocytogenes]
 gi|443428810|gb|AGC92204.1| truncated internalin A [Listeria monocytogenes]
 gi|443428828|gb|AGC92213.1| truncated internalin A [Listeria monocytogenes]
 gi|443428866|gb|AGC92232.1| truncated internalin A [Listeria monocytogenes]
 gi|443428874|gb|AGC92236.1| truncated internalin A [Listeria monocytogenes]
 gi|443428876|gb|AGC92237.1| truncated internalin A [Listeria monocytogenes]
          Length = 699

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|112959518|gb|ABI27286.1| internalin A [Listeria monocytogenes]
 gi|112959520|gb|ABI27287.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 75  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 129

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 130 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 178

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 179 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 234

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 235 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 290

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 291 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 348

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 349 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 9   QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 68

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 69  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 123

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 124 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 178

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 179 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 232

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 233 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 288

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 289 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 335

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 336 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 371


>gi|371942100|gb|AEX60862.1| internaline [Listeria monocytogenes]
          Length = 789

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|112961616|gb|ABI28430.1| internalin A [Listeria monocytogenes]
 gi|112961649|gb|ABI28452.1| internalin A [Listeria monocytogenes]
 gi|112961652|gb|ABI28454.1| internalin A [Listeria monocytogenes]
 gi|112961664|gb|ABI28462.1| internalin A [Listeria monocytogenes]
 gi|112961691|gb|ABI28480.1| internalin A [Listeria monocytogenes]
 gi|112961718|gb|ABI28498.1| internalin A [Listeria monocytogenes]
 gi|112961727|gb|ABI28504.1| internalin A [Listeria monocytogenes]
 gi|112961748|gb|ABI28518.1| internalin A [Listeria monocytogenes]
 gi|112961751|gb|ABI28520.1| internalin A [Listeria monocytogenes]
 gi|112961769|gb|ABI28532.1| internalin A [Listeria monocytogenes]
 gi|112961775|gb|ABI28536.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 89  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 143

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 144 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 192

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 193 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 248

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 249 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 304

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 305 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 362

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 363 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 5   AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 64

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 65  TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 119

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 120 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 175

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 176 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 230

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 231 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 284

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 285 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 336

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 337 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 385


>gi|112959438|gb|ABI27246.1| internalin A [Listeria monocytogenes]
 gi|112959450|gb|ABI27252.1| internalin A [Listeria monocytogenes]
 gi|112959456|gb|ABI27255.1| internalin A [Listeria monocytogenes]
 gi|112959496|gb|ABI27275.1| internalin A [Listeria monocytogenes]
 gi|112959498|gb|ABI27276.1| internalin A [Listeria monocytogenes]
 gi|112959526|gb|ABI27290.1| internalin A [Listeria monocytogenes]
 gi|112959528|gb|ABI27291.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 75  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 129

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 130 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 178

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 179 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 234

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 235 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 290

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 291 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 348

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 349 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 9   QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 68

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 69  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 123

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 124 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 178

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 179 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 232

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 233 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 288

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 289 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 335

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 336 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 371


>gi|47096455|ref|ZP_00234048.1| internalin A precursor [Listeria monocytogenes str. 1/2a F6854]
 gi|254913677|ref|ZP_05263689.1| internalin A [Listeria monocytogenes J2818]
 gi|254937992|ref|ZP_05269689.1| internalin A [Listeria monocytogenes F6900]
 gi|386046091|ref|YP_005964423.1| internalin A [Listeria monocytogenes J0161]
 gi|47015176|gb|EAL06116.1| internalin A precursor [Listeria monocytogenes str. 1/2a F6854]
 gi|194239410|emb|CAQ76845.1| internalin A [Listeria monocytogenes]
 gi|223006792|gb|ACM69353.1| internalin A [Listeria monocytogenes]
 gi|223006794|gb|ACM69354.1| internalin A [Listeria monocytogenes]
 gi|258610604|gb|EEW23212.1| internalin A [Listeria monocytogenes F6900]
 gi|293591690|gb|EFG00025.1| internalin A [Listeria monocytogenes J2818]
 gi|298359952|gb|ADI77555.1| internalin A [Listeria monocytogenes]
 gi|298359956|gb|ADI77557.1| internalin A [Listeria monocytogenes]
 gi|298359986|gb|ADI77572.1| internalin A [Listeria monocytogenes]
 gi|298360086|gb|ADI77622.1| internalin A [Listeria monocytogenes]
 gi|298360130|gb|ADI77644.1| internalin A [Listeria monocytogenes]
 gi|298360206|gb|ADI77682.1| internalin A [Listeria monocytogenes]
 gi|298360572|gb|ADI77865.1| internalin A [Listeria monocytogenes]
 gi|298360644|gb|ADI77901.1| internalin A [Listeria monocytogenes]
 gi|345533082|gb|AEO02523.1| internalin A [Listeria monocytogenes J0161]
 gi|443428774|gb|AGC92186.1| internalin A [Listeria monocytogenes]
 gi|443428776|gb|AGC92187.1| internalin A [Listeria monocytogenes]
 gi|443428868|gb|AGC92233.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|326507660|dbj|BAK03223.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 454

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 189/428 (44%), Gaps = 73/428 (17%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK-GLMKLESL 63
           +  L NL  L+      +TA   K F  L  L  L LE C  +  GL ++    + L  L
Sbjct: 62  VKALPNLLELNLSYCCNVTASMGKCFQMLPKLQTLKLEGCKFMADGLKHIGISCVSLREL 121

Query: 64  NIKWCNCITDSDMK-PLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           ++  C+ +TD+D+   +S L NL  L I+C++ +TD  +A                 +T+
Sbjct: 122 SLSKCSGVTDTDLSFVVSRLKNLLKLDITCNRNITDVSLA----------------AITS 165

Query: 122 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLT 179
           +C        SL  L +  C   S +G     K    L+ L++  +++ DE L  L G +
Sbjct: 166 SC-------HSLISLRIESCSHFSSEGLRLIGKRCCHLEELDITDSDLDDEGLKALSGCS 218

Query: 180 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN-------LES 231
            L SL +  C  I D+GL+++       C EL D  +  SG     G+T        LES
Sbjct: 219 KLSSLKIGICMRISDQGLIHIGK----SCPELRDIDLYRSGGISDEGVTQIAQGCPMLES 274

Query: 232 INLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALT-SLTGLTHLDLFGA-RI 287
           INLS+ T I+D SL  L+  + L +L +     I+  GL+ +      L  LD+     I
Sbjct: 275 INLSYCTEITDVSLMSLSKCAKLNTLEIRGCPSISSAGLSEIAIGCRLLAKLDVKKCFAI 334

Query: 288 TDSGAAYLRNFKN-LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
            D G  +L  F + LR + +    +TD G           LL+LS  C L + T+  ++G
Sbjct: 335 NDVGMFFLSQFSHSLRQINLSYCSVTDIG-----------LLSLSSICGLQNMTIVHLAG 383

Query: 347 LTG---LVSLNVSN--SRIT-SAGLRHLKPLKNLRSLTLESC---------KVTAN--DI 389
           +T    L +L VS   +R+   A  R + P   L+ +    C         KV     DI
Sbjct: 384 ITPNGLLAALMVSGGLTRVKLHAAFRSMMPPHMLKVVEARGCAFQWIDKPFKVEQERCDI 443

Query: 390 KRLQSRDL 397
            + QSRD+
Sbjct: 444 WQQQSRDV 451


>gi|148607482|gb|ABQ95519.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|294358387|gb|ADE73846.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 163/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL+ L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T + 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQVG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     +  L+ LT
Sbjct: 110 LTDITPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLISLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 50/180 (27%)

Query: 219 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 274
           G++ + G   L NL  IN S   ++D  +  L  L+ L  + ++  QI D T LA LT+L
Sbjct: 87  GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIADITPLANLTNL 144

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           TGLT   LF  +ITD     L+N  NL  LE+    ++D                     
Sbjct: 145 TGLT---LFNNQITDIDP--LKNLTNLNRLELSSNTISD--------------------- 178

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDIKRL 392
                    IS L+GL+SL     +  S G  +  LKPL NL   TLE   +++N +  +
Sbjct: 179 ---------ISALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKVSDI 222


>gi|167862032|gb|ACA05715.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     +  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|130774759|gb|ABO32394.1| InlA [Listeria monocytogenes]
 gi|298360132|gb|ADI77645.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|112961697|gb|ABI28484.1| internalin A [Listeria monocytogenes]
 gi|112961709|gb|ABI28492.1| internalin A [Listeria monocytogenes]
 gi|112961730|gb|ABI28506.1| internalin A [Listeria monocytogenes]
 gi|112961760|gb|ABI28526.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 89  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 143

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 144 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 192

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 193 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 248

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 249 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 304

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 305 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 362

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 363 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 5   AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 64

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 65  TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 119

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 120 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 175

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 176 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 230

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 231 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 284

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 285 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 336

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 337 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 385


>gi|371942076|gb|AEX60850.1| internaline [Listeria monocytogenes]
 gi|371942078|gb|AEX60851.1| internaline [Listeria monocytogenes]
 gi|371942082|gb|AEX60853.1| internaline [Listeria monocytogenes]
          Length = 789

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|112961679|gb|ABI28472.1| internalin A [Listeria monocytogenes]
 gi|112961682|gb|ABI28474.1| internalin A [Listeria monocytogenes]
 gi|112961685|gb|ABI28476.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 89  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 143

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 144 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 192

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 193 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 248

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 249 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 304

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 305 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 362

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 363 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 5   AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 64

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 65  TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 119

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 120 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 175

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 176 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 230

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 231 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 284

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 285 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 336

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 337 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 385


>gi|112959508|gb|ABI27281.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 75  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 129

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 130 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 178

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 179 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 234

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 235 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 290

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 291 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 348

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 349 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 9   QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 68

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 69  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 123

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 124 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 178

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 179 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 232

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 233 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 288

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 289 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 335

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 336 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 371


>gi|16802477|ref|NP_463962.1| internalin A [Listeria monocytogenes EGD-e]
 gi|386049359|ref|YP_005967350.1| internalin-A [Listeria monocytogenes FSL R2-561]
 gi|404282867|ref|YP_006683764.1| internalin A [Listeria monocytogenes SLCC2372]
 gi|403399437|sp|P0DJM0.1|INLA_LISMO RecName: Full=Internalin-A; Flags: Precursor
 gi|12054782|emb|CAC20628.1| internalin A [Listeria monocytogenes]
 gi|16409810|emb|CAC98512.1| Internalin A [Listeria monocytogenes EGD-e]
 gi|130774817|gb|ABO32421.1| InlA [Listeria monocytogenes]
 gi|130774821|gb|ABO32423.1| InlA [Listeria monocytogenes]
 gi|130774823|gb|ABO32424.1| InlA [Listeria monocytogenes]
 gi|150371782|dbj|BAF65680.1| internalin A [Listeria monocytogenes]
 gi|150371794|dbj|BAF65686.1| internalin A [Listeria monocytogenes]
 gi|150371804|dbj|BAF65691.1| internalin A [Listeria monocytogenes]
 gi|150371820|dbj|BAF65699.1| internalin A [Listeria monocytogenes]
 gi|150371846|dbj|BAF65712.1| internalin A [Listeria monocytogenes]
 gi|150371852|dbj|BAF65715.1| internalin A [Listeria monocytogenes]
 gi|150371856|dbj|BAF65717.1| internalin A [Listeria monocytogenes]
 gi|150371860|dbj|BAF65719.1| internalin A [Listeria monocytogenes]
 gi|150371868|dbj|BAF65723.1| internalin A [Listeria monocytogenes]
 gi|167861980|gb|ACA05689.1| InlA [Listeria monocytogenes]
 gi|194239382|emb|CAQ76831.1| internalin A [Listeria monocytogenes]
 gi|298359818|gb|ADI77488.1| internalin A [Listeria monocytogenes]
 gi|298359832|gb|ADI77495.1| internalin A [Listeria monocytogenes]
 gi|298360054|gb|ADI77606.1| internalin A [Listeria monocytogenes]
 gi|298360128|gb|ADI77643.1| internalin A [Listeria monocytogenes]
 gi|298360212|gb|ADI77685.1| internalin A [Listeria monocytogenes]
 gi|298360216|gb|ADI77687.1| internalin A [Listeria monocytogenes]
 gi|298360256|gb|ADI77707.1| internalin A [Listeria monocytogenes]
 gi|298360522|gb|ADI77840.1| internalin A [Listeria monocytogenes]
 gi|346423205|gb|AEO24730.1| internalin-A [Listeria monocytogenes FSL R2-561]
 gi|404232369|emb|CBY53772.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2372]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|371942068|gb|AEX60846.1| internaline [Listeria monocytogenes]
 gi|371942088|gb|AEX60856.1| internaline [Listeria monocytogenes]
 gi|371942106|gb|AEX60865.1| internaline [Listeria monocytogenes]
 gi|371942134|gb|AEX60879.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|294358401|gb|ADE73853.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 189/392 (48%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+GLTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLAGLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LAGLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVNGALIAPATISDGGSYAEPDIT 459


>gi|148607488|gb|ABQ95520.1| InlA [Listeria monocytogenes]
          Length = 797

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|322952088|gb|ADX21043.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|371942132|gb|AEX60878.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGDNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGDNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|223698871|gb|ACN19154.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L +
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTN 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|112961646|gb|ABI28450.1| internalin A [Listeria monocytogenes]
 gi|112961721|gb|ABI28500.1| internalin A [Listeria monocytogenes]
 gi|112961757|gb|ABI28524.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 89  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 143

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 144 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 192

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 193 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 248

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 249 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 304

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 305 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 362

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 363 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 5   AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 64

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 65  TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 119

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 120 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 175

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 176 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 230

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 231 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 284

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 285 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 336

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 337 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 385


>gi|371942140|gb|AEX60882.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|371942110|gb|AEX60867.1| internaline [Listeria monocytogenes]
 gi|371942112|gb|AEX60868.1| internaline [Listeria monocytogenes]
          Length = 789

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|298359950|gb|ADI77554.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|223698835|gb|ACN19130.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|219821339|gb|ACL37804.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|443428862|gb|AGC92230.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL+ L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G      + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LGSLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 187/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLISLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L  LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LGSLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 50/180 (27%)

Query: 219 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 274
           G++ + G   L NL  IN S   ++D  +  L  L+ L  + ++  QI D T LA LT+L
Sbjct: 87  GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 144

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           TGLT   LF  +ITD     L+N  NL  LE+    ++D                     
Sbjct: 145 TGLT---LFNNQITDLDP--LKNLTNLNRLELSSNTISD--------------------- 178

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDIKRL 392
                    IS L+GL+SL     +  S G  +  LKPL NL   TLE   +++N +  +
Sbjct: 179 ---------ISALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKVSDI 222


>gi|371942074|gb|AEX60849.1| internaline [Listeria monocytogenes]
 gi|371942102|gb|AEX60863.1| internaline [Listeria monocytogenes]
 gi|371942114|gb|AEX60869.1| internaline [Listeria monocytogenes]
 gi|371942124|gb|AEX60874.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|371942070|gb|AEX60847.1| internaline [Listeria monocytogenes]
          Length = 789

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|298360700|gb|ADI77929.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|298360360|gb|ADI77759.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|148607492|gb|ABQ95522.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|112961784|gb|ABI28542.1| internalin A [Listeria monocytogenes]
 gi|112961796|gb|ABI28550.1| internalin A [Listeria monocytogenes]
          Length = 696

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 34  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 88

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 89  F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 137

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 138 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 193

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 194 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 249

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 250 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 307

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 308 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 355



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 166/335 (49%), Gaps = 40/335 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L +
Sbjct: 29  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTN 83

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 84  LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 138

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 139 D--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTK 192

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D     + N KNL  L +    ++
Sbjct: 193 LTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 248

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 249 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 295

Query: 370 PLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           PL NL  +T   L   + T   +    +  +PN V
Sbjct: 296 PLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 330


>gi|223698700|gb|ACN19040.1| truncated internalin A [Listeria monocytogenes]
          Length = 599

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|112961781|gb|ABI28540.1| internalin A [Listeria monocytogenes]
          Length = 696

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 34  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 88

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 89  F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 137

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 138 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 193

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 194 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 249

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 250 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 307

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 308 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 355



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 166/335 (49%), Gaps = 40/335 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L +
Sbjct: 29  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTN 83

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 84  LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 138

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 139 D--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTK 192

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D     + N KNL  L +    ++
Sbjct: 193 LTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 248

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 249 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 295

Query: 370 PLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           PL NL  +T   L   + T   +    +  +PN V
Sbjct: 296 PLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 330


>gi|322952085|gb|ADX21042.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|313485046|gb|ADR52998.1| InlA [Listeria monocytogenes]
          Length = 774

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|290992602|ref|XP_002678923.1| predicted protein [Naegleria gruberi]
 gi|284092537|gb|EFC46179.1| predicted protein [Naegleria gruberi]
          Length = 305

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 89/162 (54%), Gaps = 7/162 (4%)

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           + ++  +  L SL++    I   G  +++ +  LT LD+ G RI D GA ++   K L+S
Sbjct: 122 INEMTKMKQLTSLDISYNLIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFISELKQLKS 181

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           L I    +   G+K I ++  LT L++ +N ++ D+  + IS +  L SL V+N+RI   
Sbjct: 182 LNIYNDWIGIDGIKPISEMKQLTSLDIGRN-HIGDEVAKFISDMKQLTSLTVNNNRIGVE 240

Query: 364 GLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSRDLPN 399
           G + +  +K L+SL + + ++ A      +++K+L S D+ +
Sbjct: 241 GAKFISEMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDISD 282



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 85/170 (50%), Gaps = 1/170 (0%)

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           +T +  L  L++S   + + G + +S +  L S+++    I D   + ++ L  LKSLN+
Sbjct: 125 MTKMKQLTSLDISYNLIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFISELKQLKSLNI 184

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
               I   G+  ++ +  LT LD+    I D  A ++ + K L SL +    +   G K 
Sbjct: 185 YNDWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISDMKQLTSLTVNNNRIGVEGAKF 244

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
           I ++  L  L ++ N  +  +  + IS +  L SL++S+++I + G + +
Sbjct: 245 ISEMKQLKSLGINNN-QIYAEGAKFISEMKQLTSLDISDNQIYAEGAKFI 293



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 90/178 (50%), Gaps = 5/178 (2%)

Query: 63  LNIKWCNCITDSDMKP-----LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           +++K+   + +S+  P     ++ +  L SL IS + +   G   +  +++LT L++ G 
Sbjct: 104 VDVKFSEMLFNSEETPKFINEMTKMKQLTSLDISYNLIYAEGAKSISEMKQLTSLDIGGN 163

Query: 118 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 177
            +       +S L  L  LN+    +  DG +  S++  L  L++G N I DE    +  
Sbjct: 164 RIYDKGAKFISELKQLKSLNIYNDWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISD 223

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
           +  L SL +++  IG EG   ++ +  LK L +++ Q+ + G + +S +  L S+++S
Sbjct: 224 MKQLTSLTVNNNRIGVEGAKFISEMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDIS 281



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 90/185 (48%), Gaps = 3/185 (1%)

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
           L N E  P     ++ ++ +  L  L+++   +  +G +  S++  L  L++G N I D+
Sbjct: 112 LFNSEETP---KFINEMTKMKQLTSLDISYNLIYAEGAKSISEMKQLTSLDIGGNRIYDK 168

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
               +  L  L+SLN+ +  IG +G+  ++ +  L  L++    +G    + +S +  L 
Sbjct: 169 GAKFISELKQLKSLNIYNDWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISDMKQLT 228

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           S+ ++   I     + ++ +  LKSL ++  QI   G   ++ +  LT LD+   +I   
Sbjct: 229 SLTVNNNRIGVEGAKFISEMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDISDNQIYAE 288

Query: 291 GAAYL 295
           GA ++
Sbjct: 289 GAKFI 293



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 1/167 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L SL+I + N I     K +S +  L SL I  +++ D G  ++  L++L  LN+  
Sbjct: 128 MKQLTSLDISY-NLIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFISELKQLKSLNIYN 186

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +    +  +S +  L  L++ R  + D+  +  S +  L  L +  N I  E    + 
Sbjct: 187 DWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISDMKQLTSLTVNNNRIGVEGAKFIS 246

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
            +  L+SL +++  I  EG   ++ +  L  L++SD Q+ + G + +
Sbjct: 247 EMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDISDNQIYAEGAKFI 293



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 2/166 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           ++ +  LTSL    N  I A+G K+ + +  L  LD+        G   +  L +L+SLN
Sbjct: 125 MTKMKQLTSLDISYN-LIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFISELKQLKSLN 183

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I + + I    +KP+S +  L SL I  + + D    ++  +++LT L +    +     
Sbjct: 184 I-YNDWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISDMKQLTSLTVNNNRIGVEGA 242

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
             +S +  L  L +N  Q+  +G +  S++  L  L++  N+I  E
Sbjct: 243 KFISEMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDISDNQIYAE 288


>gi|223698619|gb|ACN18986.1| truncated internalin A [Listeria monocytogenes]
 gi|223698691|gb|ACN19034.1| truncated internalin A [Listeria monocytogenes]
 gi|223698706|gb|ACN19044.1| truncated internalin A [Listeria monocytogenes]
 gi|223698715|gb|ACN19050.1| truncated internalin A [Listeria monocytogenes]
 gi|223698781|gb|ACN19094.1| truncated internalin A [Listeria monocytogenes]
 gi|223698784|gb|ACN19096.1| truncated internalin A [Listeria monocytogenes]
 gi|223698814|gb|ACN19116.1| truncated internalin A [Listeria monocytogenes]
 gi|223698838|gb|ACN19132.1| truncated internalin A [Listeria monocytogenes]
 gi|223698844|gb|ACN19136.1| truncated internalin A [Listeria monocytogenes]
 gi|223698850|gb|ACN19140.1| truncated internalin A [Listeria monocytogenes]
 gi|223698856|gb|ACN19144.1| truncated internalin A [Listeria monocytogenes]
 gi|223698880|gb|ACN19160.1| truncated internalin A [Listeria monocytogenes]
 gi|223698958|gb|ACN19212.1| truncated internalin A [Listeria monocytogenes]
 gi|223698967|gb|ACN19218.1| truncated internalin A [Listeria monocytogenes]
 gi|223698970|gb|ACN19220.1| truncated internalin A [Listeria monocytogenes]
 gi|223698973|gb|ACN19222.1| truncated internalin A [Listeria monocytogenes]
 gi|223698982|gb|ACN19228.1| truncated internalin A [Listeria monocytogenes]
          Length = 614

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|130774809|gb|ABO32417.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|38154344|gb|AAR12159.1| internalin A [Listeria monocytogenes]
          Length = 685

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 82  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 136

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 137 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 185

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 186 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 241

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 242 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 297

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 298 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 355

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 356 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 403



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 184/385 (47%), Gaps = 66/385 (17%)

Query: 27  MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD---- 73
           MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD    
Sbjct: 1   MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL 60

Query: 74  ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEG 116
                           +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE 
Sbjct: 61  KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLEL 115

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L 
Sbjct: 116 SSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LA 170

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+ 
Sbjct: 171 KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLAN 226

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + 
Sbjct: 227 NQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPIS 280

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N  
Sbjct: 281 NLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-- 330

Query: 357 NSRITSAG---LRHLKPLKNLRSLT 378
                SAG   +  L PL NL  +T
Sbjct: 331 ---WLSAGHNQISDLTPLANLTRIT 352


>gi|219821279|gb|ACL37764.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|112959552|gb|ABI27303.1| internalin A [Listeria monocytogenes]
 gi|112959556|gb|ABI27305.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 75  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 129

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 130 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 178

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 179 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 234

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 235 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 290

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 291 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 348

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 349 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 9   QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 68

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 69  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 123

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 124 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 178

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 179 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 232

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 233 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 288

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 289 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 335

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 336 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 371


>gi|313485052|gb|ADR53000.1| InlA [Listeria monocytogenes]
          Length = 771

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|290991093|ref|XP_002678170.1| predicted protein [Naegleria gruberi]
 gi|284091781|gb|EFC45426.1| predicted protein [Naegleria gruberi]
          Length = 156

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 88/153 (57%)

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           LK L++ ++ +G  G + +S +T+LE+++LS   + D     L  +  L  L++   ++T
Sbjct: 4   LKTLKIYNSFLGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIPCNRVT 63

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 324
             G  +++SL  L  L++    I D+GA ++ N KNL  L   G G+++ GV+ I  + S
Sbjct: 64  SIGAESISSLQNLITLNISQNIIADTGAKFISNLKNLNELIADGIGISNDGVEFITSMES 123

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
           LT L+L +N +  + T  LIS +  L SL++SN
Sbjct: 124 LTALSLQKNDDFEENTPLLISTMKQLTSLDLSN 156



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 58/105 (55%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +T+LE+L+L    +GD+G V L  +  L  L +   +V S G   +S L NL ++N+S  
Sbjct: 25  MTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIPCNRVTSIGAESISSLQNLITLNISQN 84

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
            I+D   + ++ L +L  L  D   I++ G+  +TS+  LT L L
Sbjct: 85  IIADTGAKFISNLKNLNELIADGIGISNDGVEFITSMESLTALSL 129



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN- 335
           L  L ++ + + + GA  +    +L +L + G  + D G   +  +  L  + LS  CN 
Sbjct: 4   LKTLKIYNSFLGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQL--VKLSIPCNR 61

Query: 336 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 395
           +T    E IS L  L++LN+S + I   G + +  LKNL  L  +   ++ + ++ + S 
Sbjct: 62  VTSIGAESISSLQNLITLNISQNIIADTGAKFISNLKNLNELIADGIGISNDGVEFITSM 121

Query: 396 D 396
           +
Sbjct: 122 E 122



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 25/154 (16%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           + +L++L I + + + +   K +S +T+L++L +S + V D G   L  + +L  L++  
Sbjct: 1   MKRLKTLKI-YNSFLGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIPC 59

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             VT+   +S+S+L +L  LN+++  ++D G  KF                       + 
Sbjct: 60  NRVTSIGAESISSLQNLITLNISQNIIADTGA-KF-----------------------IS 95

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
            L NL  L  D  GI ++G+  +T + +L  L L
Sbjct: 96  NLKNLNELIADGIGISNDGVEFITSMESLTALSL 129


>gi|223698901|gb|ACN19174.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|194239378|emb|CAQ76829.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNKISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     +  L+ LT
Sbjct: 110 LTDITPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNKISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|112959464|gb|ABI27259.1| internalin A [Listeria monocytogenes]
          Length = 698

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 36  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 90

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 91  F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 139

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 140 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 195

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 196 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 251

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 252 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 309

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 310 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 357



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 166/335 (49%), Gaps = 40/335 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L +
Sbjct: 31  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTN 85

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 86  LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 140

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 141 D--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTK 194

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D     + N KNL  L +    ++
Sbjct: 195 LTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 250

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 251 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 297

Query: 370 PLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           PL NL  +T   L   + T   +    +  +PN V
Sbjct: 298 PLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 332


>gi|322952090|gb|ADX21044.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|223698868|gb|ACN19152.1| internalin A [Listeria monocytogenes]
 gi|223698898|gb|ACN19172.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|150371726|dbj|BAF65678.1| internalin A [Listeria monocytogenes]
 gi|194326151|emb|CAQ77234.1| internalin A [Listeria monocytogenes]
 gi|298360180|gb|ADI77669.1| internalin A [Listeria monocytogenes]
 gi|298360390|gb|ADI77774.1| internalin A [Listeria monocytogenes]
 gi|298360416|gb|ADI77787.1| internalin A [Listeria monocytogenes]
 gi|298360620|gb|ADI77889.1| internalin A [Listeria monocytogenes]
 gi|298360656|gb|ADI77907.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|254854324|ref|ZP_05243672.1| internalin A [Listeria monocytogenes FSL R2-503]
 gi|300766414|ref|ZP_07076370.1| internalin A precursor [Listeria monocytogenes FSL N1-017]
 gi|404279991|ref|YP_006680889.1| internalin A [Listeria monocytogenes SLCC2755]
 gi|404285805|ref|YP_006692391.1| internalin A [Listeria monocytogenes serotype 7 str. SLCC2482]
 gi|405754532|ref|YP_006677996.1| internalin A [Listeria monocytogenes SLCC2540]
 gi|130774761|gb|ABO32395.1| InlA [Listeria monocytogenes]
 gi|130774765|gb|ABO32397.1| InlA [Listeria monocytogenes]
 gi|130774775|gb|ABO32402.1| InlA [Listeria monocytogenes]
 gi|150371872|dbj|BAF65725.1| internalin A [Listeria monocytogenes]
 gi|150371878|dbj|BAF65728.1| internalin A [Listeria monocytogenes]
 gi|150371880|dbj|BAF65729.1| internalin A [Listeria monocytogenes]
 gi|150371882|dbj|BAF65730.1| internalin A [Listeria monocytogenes]
 gi|150371884|dbj|BAF65731.1| internalin A [Listeria monocytogenes]
 gi|150371886|dbj|BAF65732.1| internalin A [Listeria monocytogenes]
 gi|167861936|gb|ACA05667.1| InlA [Listeria monocytogenes]
 gi|167861950|gb|ACA05674.1| InlA [Listeria monocytogenes]
 gi|167861974|gb|ACA05686.1| InlA [Listeria monocytogenes]
 gi|167861990|gb|ACA05694.1| InlA [Listeria monocytogenes]
 gi|194239386|emb|CAQ76833.1| internalin A [Listeria monocytogenes]
 gi|194239390|emb|CAQ76835.1| internalin A [Listeria monocytogenes]
 gi|194239398|emb|CAQ76839.1| internalin A [Listeria monocytogenes]
 gi|194326159|emb|CAQ77238.1| internalin A [Listeria monocytogenes]
 gi|223006782|gb|ACM69348.1| internalin A [Listeria monocytogenes]
 gi|258607720|gb|EEW20328.1| internalin A [Listeria monocytogenes FSL R2-503]
 gi|290350822|dbj|BAI78332.1| internalin A [Listeria monocytogenes]
 gi|290350824|dbj|BAI78333.1| internalin A [Listeria monocytogenes]
 gi|298359734|gb|ADI77446.1| internalin A [Listeria monocytogenes]
 gi|298359740|gb|ADI77449.1| internalin A [Listeria monocytogenes]
 gi|298359774|gb|ADI77466.1| internalin A [Listeria monocytogenes]
 gi|298359822|gb|ADI77490.1| internalin A [Listeria monocytogenes]
 gi|298359826|gb|ADI77492.1| internalin A [Listeria monocytogenes]
 gi|298359830|gb|ADI77494.1| internalin A [Listeria monocytogenes]
 gi|298359834|gb|ADI77496.1| internalin A [Listeria monocytogenes]
 gi|298359836|gb|ADI77497.1| internalin A [Listeria monocytogenes]
 gi|298359846|gb|ADI77502.1| internalin A [Listeria monocytogenes]
 gi|298359848|gb|ADI77503.1| internalin A [Listeria monocytogenes]
 gi|298359854|gb|ADI77506.1| internalin A [Listeria monocytogenes]
 gi|298359856|gb|ADI77507.1| internalin A [Listeria monocytogenes]
 gi|298359868|gb|ADI77513.1| internalin A [Listeria monocytogenes]
 gi|298359870|gb|ADI77514.1| internalin A [Listeria monocytogenes]
 gi|298359888|gb|ADI77523.1| internalin A [Listeria monocytogenes]
 gi|298359920|gb|ADI77539.1| internalin A [Listeria monocytogenes]
 gi|298359954|gb|ADI77556.1| internalin A [Listeria monocytogenes]
 gi|298359968|gb|ADI77563.1| internalin A [Listeria monocytogenes]
 gi|298359972|gb|ADI77565.1| internalin A [Listeria monocytogenes]
 gi|298359984|gb|ADI77571.1| internalin A [Listeria monocytogenes]
 gi|298359998|gb|ADI77578.1| internalin A [Listeria monocytogenes]
 gi|298360002|gb|ADI77580.1| internalin A [Listeria monocytogenes]
 gi|298360006|gb|ADI77582.1| internalin A [Listeria monocytogenes]
 gi|298360040|gb|ADI77599.1| internalin A [Listeria monocytogenes]
 gi|298360042|gb|ADI77600.1| internalin A [Listeria monocytogenes]
 gi|298360044|gb|ADI77601.1| internalin A [Listeria monocytogenes]
 gi|298360050|gb|ADI77604.1| internalin A [Listeria monocytogenes]
 gi|298360080|gb|ADI77619.1| internalin A [Listeria monocytogenes]
 gi|298360090|gb|ADI77624.1| internalin A [Listeria monocytogenes]
 gi|298360100|gb|ADI77629.1| internalin A [Listeria monocytogenes]
 gi|298360126|gb|ADI77642.1| internalin A [Listeria monocytogenes]
 gi|298360150|gb|ADI77654.1| internalin A [Listeria monocytogenes]
 gi|298360156|gb|ADI77657.1| internalin A [Listeria monocytogenes]
 gi|298360166|gb|ADI77662.1| internalin A [Listeria monocytogenes]
 gi|298360188|gb|ADI77673.1| internalin A [Listeria monocytogenes]
 gi|298360190|gb|ADI77674.1| internalin A [Listeria monocytogenes]
 gi|298360194|gb|ADI77676.1| internalin A [Listeria monocytogenes]
 gi|298360220|gb|ADI77689.1| internalin A [Listeria monocytogenes]
 gi|298360222|gb|ADI77690.1| internalin A [Listeria monocytogenes]
 gi|298360238|gb|ADI77698.1| internalin A [Listeria monocytogenes]
 gi|298360246|gb|ADI77702.1| internalin A [Listeria monocytogenes]
 gi|298360260|gb|ADI77709.1| internalin A [Listeria monocytogenes]
 gi|298360264|gb|ADI77711.1| internalin A [Listeria monocytogenes]
 gi|298360266|gb|ADI77712.1| internalin A [Listeria monocytogenes]
 gi|298360294|gb|ADI77726.1| internalin A [Listeria monocytogenes]
 gi|298360298|gb|ADI77728.1| internalin A [Listeria monocytogenes]
 gi|298360312|gb|ADI77735.1| internalin A [Listeria monocytogenes]
 gi|298360318|gb|ADI77738.1| internalin A [Listeria monocytogenes]
 gi|298360356|gb|ADI77757.1| internalin A [Listeria monocytogenes]
 gi|298360368|gb|ADI77763.1| internalin A [Listeria monocytogenes]
 gi|298360396|gb|ADI77777.1| internalin A [Listeria monocytogenes]
 gi|298360398|gb|ADI77778.1| internalin A [Listeria monocytogenes]
 gi|298360400|gb|ADI77779.1| internalin A [Listeria monocytogenes]
 gi|298360428|gb|ADI77793.1| internalin A [Listeria monocytogenes]
 gi|298360434|gb|ADI77796.1| internalin A [Listeria monocytogenes]
 gi|298360448|gb|ADI77803.1| internalin A [Listeria monocytogenes]
 gi|298360462|gb|ADI77810.1| internalin A [Listeria monocytogenes]
 gi|298360498|gb|ADI77828.1| internalin A [Listeria monocytogenes]
 gi|298360502|gb|ADI77830.1| internalin A [Listeria monocytogenes]
 gi|298360510|gb|ADI77834.1| internalin A [Listeria monocytogenes]
 gi|298360514|gb|ADI77836.1| internalin A [Listeria monocytogenes]
 gi|298360558|gb|ADI77858.1| internalin A [Listeria monocytogenes]
 gi|298360560|gb|ADI77859.1| internalin A [Listeria monocytogenes]
 gi|298360566|gb|ADI77862.1| internalin A [Listeria monocytogenes]
 gi|298360586|gb|ADI77872.1| internalin A [Listeria monocytogenes]
 gi|298360614|gb|ADI77886.1| internalin A [Listeria monocytogenes]
 gi|298360630|gb|ADI77894.1| internalin A [Listeria monocytogenes]
 gi|298360638|gb|ADI77898.1| internalin A [Listeria monocytogenes]
 gi|298360652|gb|ADI77905.1| internalin A [Listeria monocytogenes]
 gi|298360680|gb|ADI77919.1| internalin A [Listeria monocytogenes]
 gi|298360682|gb|ADI77920.1| internalin A [Listeria monocytogenes]
 gi|298360694|gb|ADI77926.1| internalin A [Listeria monocytogenes]
 gi|298360704|gb|ADI77931.1| internalin A [Listeria monocytogenes]
 gi|298360706|gb|ADI77932.1| internalin A [Listeria monocytogenes]
 gi|300512880|gb|EFK39971.1| internalin A precursor [Listeria monocytogenes FSL N1-017]
 gi|302034315|gb|ADK92311.1| internalin A [Listeria monocytogenes]
 gi|302034317|gb|ADK92312.1| internalin A [Listeria monocytogenes]
 gi|404223732|emb|CBY75094.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2540]
 gi|404226626|emb|CBY48031.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2755]
 gi|404244734|emb|CBY02959.1| internalin A (LPXTG motif) [Listeria monocytogenes serotype 7 str.
           SLCC2482]
          Length = 800

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|22347546|gb|AAM95918.1| internalin A precursor [Listeria monocytogenes]
 gi|22347550|gb|AAM95920.1| internalin A precursor [Listeria monocytogenes]
          Length = 744

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 82  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 136

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 137 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 185

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 186 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 241

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 242 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 297

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 298 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 355

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 356 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 403



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 184/385 (47%), Gaps = 66/385 (17%)

Query: 27  MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD---- 73
           MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD    
Sbjct: 1   MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL 60

Query: 74  ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEG 116
                           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE 
Sbjct: 61  KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLEL 115

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L 
Sbjct: 116 SSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LA 170

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+ 
Sbjct: 171 KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLAN 226

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + 
Sbjct: 227 NQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPIS 280

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N  
Sbjct: 281 NLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-- 330

Query: 357 NSRITSAG---LRHLKPLKNLRSLT 378
                SAG   +  L PL NL  +T
Sbjct: 331 ---WLSAGHNQISDLTPLANLTRIT 352


>gi|130774755|gb|ABO32392.1| InlA [Listeria monocytogenes]
 gi|130774767|gb|ABO32398.1| InlA [Listeria monocytogenes]
 gi|298359732|gb|ADI77445.1| internalin A [Listeria monocytogenes]
 gi|298360004|gb|ADI77581.1| internalin A [Listeria monocytogenes]
 gi|298360478|gb|ADI77818.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|130774769|gb|ABO32399.1| InlA [Listeria monocytogenes]
 gi|130774773|gb|ABO32401.1| InlA [Listeria monocytogenes]
 gi|167861932|gb|ACA05665.1| InlA [Listeria monocytogenes]
 gi|167861992|gb|ACA05695.1| InlA [Listeria monocytogenes]
 gi|167861994|gb|ACA05696.1| InlA [Listeria monocytogenes]
 gi|167861998|gb|ACA05698.1| InlA [Listeria monocytogenes]
 gi|167862004|gb|ACA05701.1| InlA [Listeria monocytogenes]
 gi|167862034|gb|ACA05716.1| InlA [Listeria monocytogenes]
 gi|194326169|emb|CAQ77243.1| internalin A [Listeria monocytogenes]
 gi|298359894|gb|ADI77526.1| internalin A [Listeria monocytogenes]
 gi|298360034|gb|ADI77596.1| internalin A [Listeria monocytogenes]
 gi|298360110|gb|ADI77634.1| internalin A [Listeria monocytogenes]
 gi|298360112|gb|ADI77635.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|22347556|gb|AAM95923.1| internalin A precursor [Listeria monocytogenes]
          Length = 744

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 82  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 136

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 137 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 185

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 186 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 241

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 242 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 297

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 298 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 355

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 356 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 184/385 (47%), Gaps = 66/385 (17%)

Query: 27  MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD---- 73
           MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD    
Sbjct: 1   MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL 60

Query: 74  ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEG 116
                           +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE 
Sbjct: 61  KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLEL 115

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L 
Sbjct: 116 SSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LA 170

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+ 
Sbjct: 171 KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLAN 226

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + 
Sbjct: 227 NQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPIS 280

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N  
Sbjct: 281 NLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-- 330

Query: 357 NSRITSAG---LRHLKPLKNLRSLT 378
                SAG   +  L PL NL  +T
Sbjct: 331 ---WLSAGHNQISDLTPLANLTRIT 352


>gi|313485054|gb|ADR53001.1| InlA [Listeria monocytogenes]
          Length = 771

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|371942096|gb|AEX60860.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|149674|gb|AAA25289.1| internalin [Listeria monocytogenes]
 gi|22347564|gb|AAM95927.1| internalin A precursor [Listeria monocytogenes]
          Length = 744

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 82  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 136

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 137 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 185

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 186 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 241

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 242 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 297

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 298 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 355

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 356 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 184/385 (47%), Gaps = 66/385 (17%)

Query: 27  MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD---- 73
           MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD    
Sbjct: 1   MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPL 60

Query: 74  ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEG 116
                           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE 
Sbjct: 61  KDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLEL 115

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L 
Sbjct: 116 SSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LA 170

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+ 
Sbjct: 171 KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLAN 226

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + 
Sbjct: 227 NQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPIS 280

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N  
Sbjct: 281 NLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-- 330

Query: 357 NSRITSAG---LRHLKPLKNLRSLT 378
                SAG   +  L PL NL  +T
Sbjct: 331 ---WLSAGHNQISDLTPLANLTRIT 352


>gi|371942090|gb|AEX60857.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|313485044|gb|ADR52997.1| InlA [Listeria monocytogenes]
          Length = 771

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|313485077|gb|ADR53009.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 185/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|255025517|ref|ZP_05297503.1| internalin A [Listeria monocytogenes FSL J2-003]
          Length = 744

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|28210241|ref|NP_781185.1| internalin A-like protein/ S-layer protein [Clostridium tetani E88]
 gi|28202677|gb|AAO35122.1| internalin A-like protein/putative S-layer protein [Clostridium
           tetani E88]
          Length = 695

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 177/357 (49%), Gaps = 45/357 (12%)

Query: 30  FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 89
            AG+ NL+  DL         + NL+ L  +++L   +        ++PL GLTNLK+L 
Sbjct: 352 LAGIENLI--DLRVLNAGKNNISNLEPLKSMDNLENLYLTKTKVVSLEPLRGLTNLKALV 409

Query: 90  ISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 148
           I+ + V+D + I  L  L++LTL   +   V+ A +++L  L S   L++N+  +S+   
Sbjct: 410 INETNVSDLTPIKNLINLERLTL--GDNKLVSLAGIENLVNLES---LDINKNNVSN--L 462

Query: 149 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI----------------- 191
                + +LK LN+  N +TD  +V    L NLE ++L+  G+                 
Sbjct: 463 ASIRDLTNLKSLNINENNVTDLSVVT--NLKNLERISLNKNGVTSLGALAALPELEWVTA 520

Query: 192 GDEGLVNLTGLCN---LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
            + GL +  GL N   LK L L   Q+  S L  L+ LT+LE+++L    ISD S   L+
Sbjct: 521 KENGLTSTVGLQNALKLKELFLDSNQI--SDLSSLANLTSLETLSLRTNNISDVS--SLS 576

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
            L+ +K+L L    I    +A L S+  LT L +    I+D  A  + N KNL++L I  
Sbjct: 577 DLTRMKNLYLHKNNI--GSIAPLASMENLTRLYVGKNNISDISA--VANMKNLKTLSIGE 632

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
             +++ G   +  L SL  L+++ N  +TD +  +  GL  L  + + N+++  A +
Sbjct: 633 NMVSNIG--PVSGLQSLETLDVADNF-ITDASPAI--GLPNLKDIMLLNTKVPEAQI 684



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 161/333 (48%), Gaps = 44/333 (13%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---LMK 59
           E L GL+NL +L     N      +     LINL     ER T     LV+L G   L+ 
Sbjct: 397 EPLRGLTNLKALVINETNV---SDLTPIKNLINL-----ERLTLGDNKLVSLAGIENLVN 448

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCP 118
           LESL+I   N    S++  +  LTNLKSL I+ + VTD S +  LK L++++ LN  G  
Sbjct: 449 LESLDINKNNV---SNLASIRDLTNLKSLNINENNVTDLSVVTNLKNLERIS-LNKNGV- 503

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-----SLKVLNLGFNEITDECLV 173
                L +L+AL  L ++      L+       S +G      LK L L  N+I+D  L 
Sbjct: 504 ---TSLGALAALPELEWVTAKENGLT-------STVGLQNALKLKELFLDSNQISD--LS 551

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LT+LE+L+L +  I D  + +L+ L  +K L L    +GS  +  L+ + NL  + 
Sbjct: 552 SLANLTSLETLSLRTNNISD--VSSLSDLTRMKNLYLHKNNIGS--IAPLASMENLTRLY 607

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           +    ISD S   +A + +LK+L++    +++ G   ++ L  L  LD+    ITD+  A
Sbjct: 608 VGKNNISDIS--AVANMKNLKTLSIGENMVSNIG--PVSGLQSLETLDVADNFITDASPA 663

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
                 NL+ + +    + +A +    D  ++T
Sbjct: 664 I--GLPNLKDIMLLNTKVPEAQINAFPDSVTVT 694



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 182/384 (47%), Gaps = 64/384 (16%)

Query: 38  KLDLERCTRIH---GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 94
           K DL+R T++      + NL G+  L  L +        S+++PL  + NL++L ++ +K
Sbjct: 333 KADLQRVTQLDLWDKNVTNLAGIENLIDLRVLNAGKNNISNLEPLKSMDNLENLYLTKTK 392

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 154
           V    +  L+GL      NL+   +    +  L+ + +L  +NL R  L D+     + I
Sbjct: 393 VV--SLEPLRGLT-----NLKALVINETNVSDLTPIKNL--INLERLTLGDNKLVSLAGI 443

Query: 155 G---SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE-L 210
               +L+ L++  N +++  L  ++ LTNL+SLN++   + D     L+ + NLK LE +
Sbjct: 444 ENLVNLESLDINKNNVSN--LASIRDLTNLKSLNINENNVTD-----LSVVTNLKNLERI 496

Query: 211 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 270
           S  + G + L  L+ L  LE +     G++  S   L     LK L LD+ QI+D  L++
Sbjct: 497 SLNKNGVTSLGALAALPELEWVTAKENGLT--STVGLQNALKLKELFLDSNQISD--LSS 552

Query: 271 LTSLTGLTHLDLFGARITDSGA--------------------AYLRNFKNLRSLEICGGG 310
           L +LT L  L L    I+D  +                    A L + +NL  L +    
Sbjct: 553 LANLTSLETLSLRTNNISDVSSLSDLTRMKNLYLHKNNIGSIAPLASMENLTRLYVGKNN 612

Query: 311 LTD-AGVKHIKDLSSLTL-LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
           ++D + V ++K+L +L++  N+  N          +SGL  L +L+V+++ IT A     
Sbjct: 613 ISDISAVANMKNLKTLSIGENMVSNIG-------PVSGLQSLETLDVADNFITDAS---- 661

Query: 369 KP---LKNLRSLTLESCKVTANDI 389
            P   L NL+ + L + KV    I
Sbjct: 662 -PAIGLPNLKDIMLLNTKVPEAQI 684



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 178/383 (46%), Gaps = 41/383 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT-------------RI---- 47
           L GL NL  L+ R N     +G+K   GL  L +LDL + +             RI    
Sbjct: 143 LDGLKNLEKLNLRDNKVKNIEGLK---GLEKLRELDLGKNSVFQPKPLKDLKNLRILNLE 199

Query: 48  HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 107
             G+ N + L +L+ +     +  T  D++PL  LTN+  L +  + VT   I  LK + 
Sbjct: 200 SNGIGNAEDLEELKQVEHLILSNNTVDDVEPLLTLTNVNKLYLDDNPVT--HIGKLKDMT 257

Query: 108 KLTLLNLEGCPVTA-ACLDSLSALGSLFYLN----LNRCQLSDDGCEKFSKIGSLKVLNL 162
            L  LN+    +   A L     L  L + N    L+  +L+D   +   ++      NL
Sbjct: 258 NLKRLNINNDSIEDLAELKKFKNLQWLKFKNQEMVLDNKKLNDLLVDPNKEV-KFADKNL 316

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE-LSDTQVGSSGLR 221
            F  I D+       +   +   +    + D+ + NL G+ NL  L  L+  +   S L 
Sbjct: 317 EF-AIRDKIEKPKGAIKKADLQRVTQLDLWDKNVTNLAGIENLIDLRVLNAGKNNISNLE 375

Query: 222 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
            L  + NLE++ L+ T +   SL  L GL++LK+L ++   ++D  L  + +L  L  L 
Sbjct: 376 PLKSMDNLENLYLTKTKVV--SLEPLRGLTNLKALVINETNVSD--LTPIKNLINLERLT 431

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
           L   ++     A + N  NL SL+I    +++     I+DL++L  LN+++N N+TD  L
Sbjct: 432 LGDNKLV--SLAGIENLVNLESLDINKNNVSNLA--SIRDLTNLKSLNINEN-NVTD--L 484

Query: 342 ELISGLTGLVSLNVSNSRITSAG 364
            +++ L  L  ++++ + +TS G
Sbjct: 485 SVVTNLKNLERISLNKNGVTSLG 507



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 173/406 (42%), Gaps = 100/406 (24%)

Query: 75  DMKPLSGLT---NLKSLQISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           ++K +SGL    NL+SL +S +++ D G ++ LK L++LTL   +   V A     L  L
Sbjct: 92  NIKDISGLEFFENLQSLDLSNNEIKDLGSLSGLKYLKELTLYKNKITDVKA-----LDGL 146

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
            +L  LNL   ++ +   E    +  L+ L+LG N +       LK L NL  LNL+S G
Sbjct: 147 KNLEKLNLRDNKVKN--IEGLKGLEKLRELDLGKNSVFQPK--PLKDLKNLRILNLESNG 202

Query: 191 IGD----------EGLV----------NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
           IG+          E L+           L  L N+  L L D  V   G   L  +TNL+
Sbjct: 203 IGNAEDLEELKQVEHLILSNNTVDDVEPLLTLTNVNKLYLDDNPVTHIG--KLKDMTNLK 260

Query: 231 SINLSFTGISD-GSLRKLAGLSSLKSLN----LDARQITD-------------------- 265
            +N++   I D   L+K   L  LK  N    LD +++ D                    
Sbjct: 261 RLNINNDSIEDLAELKKFKNLQWLKFKNQEMVLDNKKLNDLLVDPNKEVKFADKNLEFAI 320

Query: 266 -------TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
                   G      L  +T LDL+   +T+   A + N  +LR L        +AG  +
Sbjct: 321 RDKIEKPKGAIKKADLQRVTQLDLWDKNVTN--LAGIENLIDLRVL--------NAGKNN 370

Query: 319 IKDLSSLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
           I +L  L  ++  +N  LT     +LE + GLT L +L ++ + ++   L  +K L NL 
Sbjct: 371 ISNLEPLKSMDNLENLYLTKTKVVSLEPLRGLTNLKALVINETNVSD--LTPIKNLINLE 428

Query: 376 SLT-----------------LESCKVTANDIKRLQS-RDLPNLVSF 403
            LT                 LES  +  N++  L S RDL NL S 
Sbjct: 429 RLTLGDNKLVSLAGIENLVNLESLDINKNNVSNLASIRDLTNLKSL 474


>gi|343423900|emb|CCD18013.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
          Length = 648

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 132/423 (31%), Positives = 196/423 (46%), Gaps = 75/423 (17%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS LS+L +L       IT   +   + L +L  LDL  CT I   +  L  ++ L+ L+
Sbjct: 223 LSELSSLRTLDISHCTGIT--DVSPLSELSSLRMLDLSHCTDI-SNVSRLSKIIALQKLD 279

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           +  C  +TD  + PLS +  L+ L +S C+ +TD  +  L  L  L +LNL  C      
Sbjct: 280 LSHCTGVTD--VSPLSKMIGLEKLYLSHCTGITD--VPPLSELSSLRMLNLSHC-TGITD 334

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE 182
           +  LS   SL  L+L+ C    D     S++ SL+ L+L     ITD  +  L  L++L 
Sbjct: 335 VSPLSEFSSLHTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLC 391

Query: 183 SLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGI 239
           +L+L  C GI D   L  L+ LC L   ELS    G + +  LS L++L +++LS  TGI
Sbjct: 392 TLDLSHCTGITDVSPLSKLSSLCTL---ELSHCT-GITDVSPLSELSSLRTLDLSHCTGI 447

Query: 240 SDGS---------------------LRKLAGLSSLKSLNLD-ARQITD------------ 265
           +D S                     +  L+ LSSL+ LNL     ITD            
Sbjct: 448 TDVSPLSELSGLRMLYLSHCPSITDVSPLSELSSLRMLNLSHCTGITDVSPLSEFSSLHI 507

Query: 266 ------TGLAALTSLTGLTHLDLFGAR----ITD-SGAAYLRNFKNLRSLEICGGGLTDA 314
                 TG+  ++ L+ L+ L + G      ITD S    +  F+ L  L  C G +TD 
Sbjct: 508 LGLSHCTGITDVSPLSKLSSLHILGLSHCTGITDVSPLTTIIGFEKLY-LSNCTG-ITD- 564

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
            V  + +LSSL  L+LS    +TD  +  +S L+ L +L  S+      G+  + PL  L
Sbjct: 565 -VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLYFSH----CTGITDVSPLSEL 617

Query: 375 RSL 377
            SL
Sbjct: 618 SSL 620



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 189/374 (50%), Gaps = 58/374 (15%)

Query: 35  NLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-C 92
           +L  LD+  CT    G+ N+  L KL SL  + +  C   +++ PLS L++L++L IS C
Sbjct: 182 SLRMLDISHCT----GITNVSPLSKLSSLRTLYFLYCTGITNVSPLSELSSLRTLDISHC 237

Query: 93  SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD------ 146
           + +TD  ++ L  L  L +L+L  C    + +  LS + +L  L+L+ C    D      
Sbjct: 238 TGITD--VSPLSELSSLRMLDLSHC-TDISNVSRLSKIIALQKLDLSHCTGVTDVSPLSK 294

Query: 147 --GCEKF--------------SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 189
             G EK               S++ SL++LNL     ITD  +  L   ++L +L+L  C
Sbjct: 295 MIGLEKLYLSHCTGITDVPPLSELSSLRMLNLSHCTGITD--VSPLSEFSSLHTLDLSHC 352

Query: 190 -GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 247
            GI D  +  L+ L +L+ L+LS    G + +  LS L++L +++LS  TGI+D S   L
Sbjct: 353 TGITD--VSPLSELSSLRTLDLSHCT-GITDVSPLSELSSLCTLDLSHCTGITDVS--PL 407

Query: 248 AGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLE 305
           + LSSL +L L     ITD  ++ L+ L+ L  LDL     ITD   + L     LR L 
Sbjct: 408 SKLSSLCTLELSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSGLRMLY 463

Query: 306 ICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSA 363
           +     +TD  V  + +LSSL +LNLS    +TD     +S L+   SL++   S  T  
Sbjct: 464 LSHCPSITD--VSPLSELSSLRMLNLSHCTGITD-----VSPLSEFSSLHILGLSHCT-- 514

Query: 364 GLRHLKPLKNLRSL 377
           G+  + PL  L SL
Sbjct: 515 GITDVSPLSKLSSL 528


>gi|313485056|gb|ADR53002.1| InlA [Listeria monocytogenes]
          Length = 789

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|223698610|gb|ACN18980.1| internalin A [Listeria monocytogenes]
 gi|223698616|gb|ACN18984.1| internalin A [Listeria monocytogenes]
 gi|223698631|gb|ACN18994.1| internalin A [Listeria monocytogenes]
 gi|223698637|gb|ACN18998.1| internalin A [Listeria monocytogenes]
 gi|223698640|gb|ACN19000.1| internalin A [Listeria monocytogenes]
 gi|223698649|gb|ACN19006.1| internalin A [Listeria monocytogenes]
 gi|223698652|gb|ACN19008.1| internalin A [Listeria monocytogenes]
 gi|223698661|gb|ACN19014.1| internalin A [Listeria monocytogenes]
 gi|223698667|gb|ACN19018.1| internalin A [Listeria monocytogenes]
 gi|223698676|gb|ACN19024.1| internalin A [Listeria monocytogenes]
 gi|223698679|gb|ACN19026.1| internalin A [Listeria monocytogenes]
 gi|223698685|gb|ACN19030.1| internalin A [Listeria monocytogenes]
 gi|223698688|gb|ACN19032.1| internalin A [Listeria monocytogenes]
 gi|223698709|gb|ACN19046.1| internalin A [Listeria monocytogenes]
 gi|223698721|gb|ACN19054.1| internalin A [Listeria monocytogenes]
 gi|223698724|gb|ACN19056.1| internalin A [Listeria monocytogenes]
 gi|223698727|gb|ACN19058.1| internalin A [Listeria monocytogenes]
 gi|223698730|gb|ACN19060.1| internalin A [Listeria monocytogenes]
 gi|223698733|gb|ACN19062.1| internalin A [Listeria monocytogenes]
 gi|223698742|gb|ACN19068.1| internalin A [Listeria monocytogenes]
 gi|223698763|gb|ACN19082.1| internalin A [Listeria monocytogenes]
 gi|223698790|gb|ACN19100.1| internalin A [Listeria monocytogenes]
 gi|223698808|gb|ACN19112.1| internalin A [Listeria monocytogenes]
 gi|223698811|gb|ACN19114.1| internalin A [Listeria monocytogenes]
 gi|223698823|gb|ACN19122.1| internalin A [Listeria monocytogenes]
 gi|223698853|gb|ACN19142.1| internalin A [Listeria monocytogenes]
 gi|223698874|gb|ACN19156.1| internalin A [Listeria monocytogenes]
 gi|223698889|gb|ACN19166.1| internalin A [Listeria monocytogenes]
 gi|223698949|gb|ACN19206.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L +
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTN 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|298360550|gb|ADI77854.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     +  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|38154342|gb|AAR12158.1| internalin A [Listeria monocytogenes]
          Length = 728

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 82  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 136

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 137 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 185

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 186 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 241

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 242 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 297

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 298 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 355

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 356 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 403



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 184/385 (47%), Gaps = 66/385 (17%)

Query: 27  MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD---- 73
           MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD    
Sbjct: 1   MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL 60

Query: 74  ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEG 116
                           +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE 
Sbjct: 61  KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLEL 115

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L 
Sbjct: 116 SSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LA 170

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+ 
Sbjct: 171 KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLAN 226

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + 
Sbjct: 227 NQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPIS 280

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N  
Sbjct: 281 NLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-- 330

Query: 357 NSRITSAG---LRHLKPLKNLRSLT 378
                SAG   +  L PL NL  +T
Sbjct: 331 ---WLSAGHNQISDLTPLANLTRIT 352


>gi|223698976|gb|ACN19224.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|223698625|gb|ACN18990.1| internalin A [Listeria monocytogenes]
 gi|223698736|gb|ACN19064.1| internalin A [Listeria monocytogenes]
 gi|223698739|gb|ACN19066.1| internalin A [Listeria monocytogenes]
 gi|223698847|gb|ACN19138.1| internalin A [Listeria monocytogenes]
 gi|223698904|gb|ACN19176.1| internalin A [Listeria monocytogenes]
 gi|223698955|gb|ACN19210.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L +
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTN 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|149173875|ref|ZP_01852504.1| hypothetical protein PM8797T_05540 [Planctomyces maris DSM 8797]
 gi|148847405|gb|EDL61739.1| hypothetical protein PM8797T_05540 [Planctomyces maris DSM 8797]
          Length = 525

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 167/397 (42%), Gaps = 71/397 (17%)

Query: 5   LSGLSNLTSLSFR-----RNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLM 58
           L  L  + +L+ R     + N  T  G++    L  L  LDL    ++   G+ +L+ L 
Sbjct: 87  LKELPEVQTLTLRGVHTIKGNHFTDDGLRYVGQLKKLRYLDLSVNYQLTDAGMRHLESLK 146

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS--------------GIAYLK 104
           +LE L++  C   TD+  K L+ LT+L++L++  + +T                 + Y K
Sbjct: 147 QLEHLDLSGCRRFTDASGKSLAQLTSLRTLKLRQTSLTPDVLTALSQLPELKHLAVKYSK 206

Query: 105 G----------LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSK 153
           G          L+K+ L  LEG  +    L  ++ + SL  L   + + + DD     + 
Sbjct: 207 GMWLNENTIVPLEKMPLEELEGMLIKDENLPLIAQMKSLKSLPFEQDRSIKDDQLSYLTH 266

Query: 154 IGSLKVLNLGFNEITDEC--LVHLKGLTNLE--SLNLDSCGIGDE----GLVNLT----- 200
           I  +K LN+     T +   L+ L+ L  LE  S++L +   GD     GL+ L      
Sbjct: 267 IRQIKKLNIVLTRGTSDTSQLIQLQALPELETLSISLGNSTEGDPLDRSGLLALAKIPAL 326

Query: 201 -----GLCNLKCLE--------------LSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
                GL N+  LE              +  +Q   + L +L  ++ L+ + +    +SD
Sbjct: 327 KELGIGLVNVPILEAISHCTQVQKLNLNVDTSQFQPTDLAYLKEMSRLKDLTVQIALVSD 386

Query: 242 GSLRKLAGLSSLKSLNL--------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
                L  + SL+ ++         +    + T L  L +L  L  LDL G  +TD G  
Sbjct: 387 DLWATLGQVKSLEEISFNWGWPPQKEPPPFSMTSLKQLQNLPRLKGLDLNGFPVTDEGLG 446

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
           YL   + L  L +    +T+AG+  ++ LS L  L+ 
Sbjct: 447 YLGQCRTLERLGLNNAPITNAGLLQLRHLSQLKKLSF 483



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 184/426 (43%), Gaps = 73/426 (17%)

Query: 41  LERCTRIHGGLVNLKGLMKLESLNIKWCNCI-----TDSDMKPLSGLTNLKSLQISCS-K 94
           L+R       L  LK L ++++L ++  + I     TD  ++ +  L  L+ L +S + +
Sbjct: 74  LKRLPLADDDLTVLKELPEVQTLTLRGVHTIKGNHFTDDGLRYVGQLKKLRYLDLSVNYQ 133

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
           +TD+G+ +L+ L++L  L+L GC   T A   SL+ L SL  L L +  L+ D     S+
Sbjct: 134 LTDAGMRHLESLKQLEHLDLSGCRRFTDASGKSLAQLTSLRTLKLRQTSLTPDVLTALSQ 193

Query: 154 IGSLKVLNLGFNE------------------------ITDECLVHLKGLTNLESLNLDS- 188
           +  LK L + +++                        I DE L  +  + +L+SL  +  
Sbjct: 194 LPELKHLAVKYSKGMWLNENTIVPLEKMPLEELEGMLIKDENLPLIAQMKSLKSLPFEQD 253

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGS--- 243
             I D+ L  LT +  +K L +  T+  S  S L  L  L  LE++++S    ++G    
Sbjct: 254 RSIKDDQLSYLTHIRQIKKLNIVLTRGTSDTSQLIQLQALPELETLSISLGNSTEGDPLD 313

Query: 244 ---LRKLAGLSSLKSL------------------------NLDARQITDTGLAALTSLTG 276
              L  LA + +LK L                        N+D  Q   T LA L  ++ 
Sbjct: 314 RSGLLALAKIPALKELGIGLVNVPILEAISHCTQVQKLNLNVDTSQFQPTDLAYLKEMSR 373

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG--------LTDAGVKHIKDLSSLTLL 328
           L  L +  A ++D   A L   K+L  +    G          +   +K +++L  L  L
Sbjct: 374 LKDLTVQIALVSDDLWATLGQVKSLEEISFNWGWPPQKEPPPFSMTSLKQLQNLPRLKGL 433

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           +L+    +TD+ L  +     L  L ++N+ IT+AGL  L+ L  L+ L+    K+    
Sbjct: 434 DLN-GFPVTDEGLGYLGQCRTLERLGLNNAPITNAGLLQLRHLSQLKKLSFYGSKIDREP 492

Query: 389 IKRLQS 394
            + L  
Sbjct: 493 AEELHQ 498



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 105/261 (40%), Gaps = 45/261 (17%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD--LERCTRIHGGLVNLKGLMKLES 62
           ++ + +L SL F ++ +I    +     +  + KL+  L R T     L+ L+ L +LE+
Sbjct: 239 IAQMKSLKSLPFEQDRSIKDDQLSYLTHIRQIKKLNIVLTRGTSDTSQLIQLQALPELET 298

Query: 63  LNIKWCNCITDSDMKPLS------------------GLTNLKSLQ--------------I 90
           L+I   N  T+ D  PL                   GL N+  L+              +
Sbjct: 299 LSISLGNS-TEGD--PLDRSGLLALAKIPALKELGIGLVNVPILEAISHCTQVQKLNLNV 355

Query: 91  SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 150
             S+   + +AYLK + +L  L ++   V+     +L  + SL  ++ N           
Sbjct: 356 DTSQFQPTDLAYLKEMSRLKDLTVQIALVSDDLWATLGQVKSLEEISFNWGWPPQKEPPP 415

Query: 151 FS--------KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           FS         +  LK L+L    +TDE L +L     LE L L++  I + GL+ L  L
Sbjct: 416 FSMTSLKQLQNLPRLKGLDLNGFPVTDEGLGYLGQCRTLERLGLNNAPITNAGLLQLRHL 475

Query: 203 CNLKCLELSDTQVGSSGLRHL 223
             LK L    +++       L
Sbjct: 476 SQLKKLSFYGSKIDREPAEEL 496


>gi|223698883|gb|ACN19162.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L +
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTN 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|112959536|gb|ABI27295.1| internalin A [Listeria monocytogenes]
 gi|112959546|gb|ABI27300.1| internalin A [Listeria monocytogenes]
          Length = 734

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 75  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 129

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 130 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 178

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 179 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 234

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 235 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 290

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 291 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 348

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 349 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 187/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 9   QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 68

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 69  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 123

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 124 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 178

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 179 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 232

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D     + N KNL  L +    +
Sbjct: 233 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 288

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 289 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 335

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 336 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 371


>gi|71912408|gb|AAZ53236.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     +  L+ LT
Sbjct: 110 LTDITPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|112961700|gb|ABI28486.1| internalin A [Listeria monocytogenes]
          Length = 748

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 89  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 143

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 144 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 192

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 193 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 248

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 249 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 304

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 305 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 362

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 363 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 5   AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 64

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 65  TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 119

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 120 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 175

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 176 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 230

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 231 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 285

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 286 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 336

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 337 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 385


>gi|29423714|gb|AAO73555.1| internalin A [Listeria monocytogenes]
          Length = 743

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 81  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 135

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 136 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 184

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 185 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 240

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 241 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 296

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 297 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 354

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 355 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 402



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 15  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 74

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 75  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 129

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 130 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 184

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 185 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 238

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 239 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 294

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 295 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 341

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 342 TPLANLTRIT 351


>gi|371942104|gb|AEX60864.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|371942084|gb|AEX60854.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|223698658|gb|ACN19012.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|443428800|gb|AGC92199.1| truncated internalin A [Listeria monocytogenes]
 gi|443428802|gb|AGC92200.1| truncated internalin A [Listeria monocytogenes]
 gi|443428806|gb|AGC92202.1| truncated internalin A [Listeria monocytogenes]
 gi|443428824|gb|AGC92211.1| truncated internalin A [Listeria monocytogenes]
 gi|443428830|gb|AGC92214.1| truncated internalin A [Listeria monocytogenes]
 gi|443428832|gb|AGC92215.1| truncated internalin A [Listeria monocytogenes]
 gi|443428834|gb|AGC92216.1| truncated internalin A [Listeria monocytogenes]
          Length = 797

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|313485070|gb|ADR53006.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 187/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
                + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 ISP--ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|194326157|emb|CAQ77237.1| internalin A [Listeria monocytogenes]
 gi|290350820|dbj|BAI78331.1| internalin A [Listeria monocytogenes]
 gi|290350836|dbj|BAI78339.1| internalin A [Listeria monocytogenes]
 gi|298360124|gb|ADI77641.1| internalin A [Listeria monocytogenes]
 gi|298360394|gb|ADI77776.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|22347554|gb|AAM95922.1| internalin A precursor [Listeria monocytogenes]
          Length = 741

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 82  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 136

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 137 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 185

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 186 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 241

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 242 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 297

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 298 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 355

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 356 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 403



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 184/385 (47%), Gaps = 66/385 (17%)

Query: 27  MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD---- 73
           MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD    
Sbjct: 1   MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL 60

Query: 74  ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEG 116
                           +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE 
Sbjct: 61  KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLEL 115

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L 
Sbjct: 116 SSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LA 170

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+ 
Sbjct: 171 KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLAN 226

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + 
Sbjct: 227 NQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPIS 280

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N  
Sbjct: 281 NLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-- 330

Query: 357 NSRITSAG---LRHLKPLKNLRSLT 378
                SAG   +  L PL NL  +T
Sbjct: 331 ---WLSAGHNQISDLTPLANLTRIT 352


>gi|298360200|gb|ADI77679.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|294358397|gb|ADE73851.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +R L PL NL  +T
Sbjct: 386 N-----WLSAGHNQIRDLTPLANLTRIT 408



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 159/348 (45%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIRD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D+ 
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPDTISDGGSYAEPDIP 459


>gi|130774793|gb|ABO32411.1| InlA [Listeria monocytogenes]
 gi|194239384|emb|CAQ76832.1| internalin A [Listeria monocytogenes]
          Length = 797

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|47092503|ref|ZP_00230292.1| internalin A [Listeria monocytogenes str. 4b H7858]
 gi|417314487|ref|ZP_12101186.1| internalin A [Listeria monocytogenes J1816]
 gi|47019095|gb|EAL09839.1| internalin A [Listeria monocytogenes str. 4b H7858]
 gi|130774783|gb|ABO32406.1| InlA [Listeria monocytogenes]
 gi|130774787|gb|ABO32408.1| InlA [Listeria monocytogenes]
 gi|167861878|gb|ACA05638.1| InlA [Listeria monocytogenes]
 gi|167861926|gb|ACA05662.1| InlA [Listeria monocytogenes]
 gi|194239406|emb|CAQ76843.1| internalin A [Listeria monocytogenes]
 gi|223006800|gb|ACM69357.1| internalin A [Listeria monocytogenes]
 gi|223006808|gb|ACM69361.1| internalin A [Listeria monocytogenes]
 gi|294358399|gb|ADE73852.1| InlA [Listeria monocytogenes]
 gi|298359958|gb|ADI77558.1| internalin A [Listeria monocytogenes]
 gi|298359988|gb|ADI77573.1| internalin A [Listeria monocytogenes]
 gi|298360010|gb|ADI77584.1| internalin A [Listeria monocytogenes]
 gi|298360208|gb|ADI77683.1| internalin A [Listeria monocytogenes]
 gi|298360370|gb|ADI77764.1| internalin A [Listeria monocytogenes]
 gi|298360402|gb|ADI77780.1| internalin A [Listeria monocytogenes]
 gi|298360472|gb|ADI77815.1| internalin A [Listeria monocytogenes]
 gi|298360544|gb|ADI77851.1| internalin A [Listeria monocytogenes]
 gi|298360592|gb|ADI77875.1| internalin A [Listeria monocytogenes]
 gi|328467733|gb|EGF38785.1| internalin A [Listeria monocytogenes J1816]
 gi|443428820|gb|AGC92209.1| truncated internalin A [Listeria monocytogenes]
 gi|443428844|gb|AGC92221.1| truncated internalin A [Listeria monocytogenes]
 gi|443428846|gb|AGC92222.1| truncated internalin A [Listeria monocytogenes]
 gi|443428850|gb|AGC92224.1| truncated internalin A [Listeria monocytogenes]
 gi|443428854|gb|AGC92226.1| truncated internalin A [Listeria monocytogenes]
 gi|443428856|gb|AGC92227.1| truncated internalin A [Listeria monocytogenes]
          Length = 797

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 334

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 335 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|259489824|ref|NP_001159243.1| uncharacterized protein LOC100304332 [Zea mays]
 gi|223942967|gb|ACN25567.1| unknown [Zea mays]
 gi|413920256|gb|AFW60188.1| hypothetical protein ZEAMMB73_234209 [Zea mays]
          Length = 648

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 178/400 (44%), Gaps = 70/400 (17%)

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           G   L+SL++KWC  I+D  +  L+     L+SL IS  KVT+  +  L  L+KL  + +
Sbjct: 169 GCPGLQSLSLKWCREISDIGVDLLAKKCPQLRSLDISYLKVTNESLRSLSTLEKLEDIAM 228

Query: 115 EGC-PVTAACLDSLSALGSLFYLNLNRCQ---------LSD-----------------DG 147
             C  V    L  LS   SL  +++ RC          L D                 + 
Sbjct: 229 VSCLFVDDDGLQMLSMCSSLQSIDVARCHHVSSLGLASLMDGQRSLRKINVAHSLHEIEA 288

Query: 148 C--EKFSKIG-SLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGL 202
           C   K S IG +L VL L   EI    L  +     NL  + L  C G+ D+G+V+L   
Sbjct: 289 CVLSKLSTIGETLTVLRLDGLEIFASNLQAIGSTCKNLVEIGLSKCNGVTDDGIVSLVAR 348

Query: 203 C---------------------------NLKCLELSDTQ-VGSSGLRHLSGL-TNLESIN 233
           C                            ++CL L     V   GL  ++ L ++L+ I+
Sbjct: 349 CRDLRTIDVTCCHLLTNAALAAIAENCRKIECLRLESCPFVSEKGLESIATLCSDLKEID 408

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LTHLDLFG-ARITDS 290
           L+   I+D +L++LA  S L  L L     I+D GL  +++  G L  LDL+  + +TD 
Sbjct: 409 LTDCRINDAALQQLASCSELLILKLGLCSSISDEGLVYISANCGKLVELDLYRCSAVTDD 468

Query: 291 G-AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GL 347
           G AA     K +R L +C    +TD G+KH+  L  L  L L     +T   +  I+ G 
Sbjct: 469 GLAAVASGCKKMRMLNLCYCTQITDGGLKHVGGLEELANLELRCLVRVTGVGITSIAVGC 528

Query: 348 TGLVSLNVSNSR-ITSAGLRHL-KPLKNLRSLTLESCKVT 385
           + LV L++     +  AGL  L +  +NLR LT+  C+VT
Sbjct: 529 SSLVELDLKRCYSVDDAGLWALSRYSQNLRQLTVSYCQVT 568



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 163/344 (47%), Gaps = 38/344 (11%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           LE++++  C    D +M  L+    L+ L +  C  VTD G+A +            GCP
Sbjct: 122 LEAVDLSHCVAAGDREMAALAAAAGLRDLVMDKCLGVTDVGLAKVA----------VGCP 171

Query: 119 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLK 176
                         L  L+L  C ++SD G +  +K    L+ L++ + ++T+E L  L 
Sbjct: 172 -------------GLQSLSLKWCREISDIGVDLLAKKCPQLRSLDISYLKVTNESLRSLS 218

Query: 177 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHL-SGLTNLESIN 233
            L  LE + + SC  + D+GL  L+   +L+ ++++    V S GL  L  G  +L  IN
Sbjct: 219 TLEKLEDIAMVSCLFVDDDGLQMLSMCSSLQSIDVARCHHVSSLGLASLMDGQRSLRKIN 278

Query: 234 L--SFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGAR-IT 288
           +  S   I    L KL+ +  +L  L LD  +I  + L A+ ++   L  + L     +T
Sbjct: 279 VAHSLHEIEACVLSKLSTIGETLTVLRLDGLEIFASNLQAIGSTCKNLVEIGLSKCNGVT 338

Query: 289 DSG-AAYLRNFKNLRSLEI-CGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS 345
           D G  + +   ++LR++++ C   LT+A +  I ++   +  L L     +++K LE I+
Sbjct: 339 DDGIVSLVARCRDLRTIDVTCCHLLTNAALAAIAENCRKIECLRLESCPFVSEKGLESIA 398

Query: 346 GL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
            L + L  +++++ RI  A L+ L     L  L L  C   +++
Sbjct: 399 TLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSSISDE 442



 Score = 45.1 bits (105), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 29/181 (16%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRI-HGGLVNLK-GLMK 59
           + L+  S L  L     ++I+ +G+    A    LV+LDL RC+ +   GL  +  G  K
Sbjct: 420 QQLASCSELLILKLGLCSSISDEGLVYISANCGKLVELDLYRCSAVTDDGLAAVASGCKK 479

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCP 118
           +  LN+ +C  ITD  +K + GL  L +L++ C  +VT  GI  +            GC 
Sbjct: 480 MRMLNLCYCTQITDGGLKHVGGLEELANLELRCLVRVTGVGITSIA----------VGC- 528

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGS-LKVLNLGFNEITDECLVHLK 176
                        SL  L+L RC   DD G    S+    L+ L + + ++T   L HL 
Sbjct: 529 ------------SSLVELDLKRCYSVDDAGLWALSRYSQNLRQLTVSYCQVTGLGLCHLL 576

Query: 177 G 177
           G
Sbjct: 577 G 577


>gi|130774825|gb|ABO32425.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|223698886|gb|ACN19164.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 157/308 (50%), Gaps = 37/308 (12%)

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGSL 133
           D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE    T + + +LS L SL
Sbjct: 49  DITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLELSSNTISDISALSGLTSL 103

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I D
Sbjct: 104 QQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD 158

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
             +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ L
Sbjct: 159 --ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
             L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++D
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD 268

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLKP 370
                I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L P
Sbjct: 269 -----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLTP 315

Query: 371 LKNLRSLT 378
           L NL  +T
Sbjct: 316 LANLTRIT 323


>gi|223698607|gb|ACN18978.1| internalin A [Listeria monocytogenes]
 gi|223698703|gb|ACN19042.1| internalin A [Listeria monocytogenes]
 gi|223698760|gb|ACN19080.1| internalin A [Listeria monocytogenes]
 gi|223698907|gb|ACN19178.1| internalin A [Listeria monocytogenes]
 gi|223698910|gb|ACN19180.1| internalin A [Listeria monocytogenes]
 gi|223698916|gb|ACN19184.1| internalin A [Listeria monocytogenes]
 gi|223698919|gb|ACN19186.1| internalin A [Listeria monocytogenes]
 gi|223698964|gb|ACN19216.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|219821276|gb|ACL37762.1| internalin A [Listeria monocytogenes]
 gi|219821336|gb|ACL37802.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 187/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D     + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 341 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 376


>gi|130774795|gb|ABO32412.1| InlA [Listeria monocytogenes]
 gi|150371796|dbj|BAF65687.1| internalin A [Listeria monocytogenes]
 gi|150371806|dbj|BAF65692.1| internalin A [Listeria monocytogenes]
 gi|150371822|dbj|BAF65700.1| internalin A [Listeria monocytogenes]
 gi|194326149|emb|CAQ77233.1| internalin A [Listeria monocytogenes]
 gi|298359930|gb|ADI77544.1| internalin A [Listeria monocytogenes]
 gi|298360322|gb|ADI77740.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|112961772|gb|ABI28534.1| internalin A [Listeria monocytogenes]
          Length = 748

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 89  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 143

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 144 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 192

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 193 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 248

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 249 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 304

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 305 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 362

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 363 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 5   AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 64

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 65  TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 119

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 120 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 175

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 176 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 230

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D    
Sbjct: 231 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 285

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 286 -ISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 336

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 337 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 385


>gi|406830657|ref|ZP_11090251.1| hypothetical protein SpalD1_03434 [Schlesneria paludicola DSM
           18645]
          Length = 254

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 93/174 (53%)

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L+ L     L +L+++   +++ G  +  K+ SL  L L  ++I+D  L  L+ L NL 
Sbjct: 65  YLNLLKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLT 124

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           +L++   GI +EG+ ++  L  L+ L L  T +   GL  L  LT+L  +NL  + ++D 
Sbjct: 125 TLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDD 184

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
           +   L+ L+SL +L+L   +I+D GLA+   L  LT L     + T +G   L+
Sbjct: 185 AANVLSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEALK 238



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 2/179 (1%)

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           L    +L  +++S T I++  + ++  L+SL +L L   QI+D GL+ L SL  LT L +
Sbjct: 69  LKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI 128

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
            G  I++ G   +     LR L +    +T+ G+  +K L+ L+ LNL    NL D    
Sbjct: 129 VGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIH-SNLNDDAAN 187

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 401
           ++S LT L +L++  + I+  GL     L NL  LT +  K T    + L+ + LPNL+
Sbjct: 188 VLSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEALK-QALPNLM 245



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%)

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           LK   +L  L++    I + G+  +  L +L  L LS +Q+  +GL  L  L NL ++++
Sbjct: 69  LKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI 128

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
              GIS+  +R +  L  L+ L+L    IT+ GL  L  LT L+ L+L  + + D  A  
Sbjct: 129 VGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANV 188

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           L    +L +L +    ++D G+     L++LT+L   +N
Sbjct: 189 LSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRN 227



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 11/178 (6%)

Query: 52  VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 111
           VN KG  K    N K+ N      +KP   LT    L +S + +T++G+  +  L  LT 
Sbjct: 53  VNFKGNKKF---NYKYLNL-----LKPFRDLT---WLDVSGTTITNAGMPEIGKLTSLTA 101

Query: 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
           L L    ++ A L  L +L +L  L++    +S++G     ++  L++L+LG   IT+E 
Sbjct: 102 LYLSKSQISDAGLSELRSLKNLTTLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEG 161

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
           L  LK LT+L  LNL    + D+    L+ L +L  L L   ++   GL   + L NL
Sbjct: 162 LHELKKLTHLSDLNLIHSNLNDDAANVLSELTSLTTLHLGRNEISDVGLASFNKLNNL 219



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 1/168 (0%)

Query: 14  LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 73
           ++F+ N     + +       +L  LD+   T  + G+  +  L  L +L +     I+D
Sbjct: 53  VNFKGNKKFNYKYLNLLKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQ-ISD 111

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           + +  L  L NL +L I  + +++ G+  +  L +L +L+L    +T   L  L  L  L
Sbjct: 112 AGLSELRSLKNLTTLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHL 171

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             LNL    L+DD     S++ SL  L+LG NEI+D  L     L NL
Sbjct: 172 SDLNLIHSNLNDDAANVLSELTSLTTLHLGRNEISDVGLASFNKLNNL 219



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 1/147 (0%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           IT  GM     L +L  L L +      GL  L+ L  L +L+I   N I++  M+ +  
Sbjct: 85  ITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI-VGNGISNEGMRSIGE 143

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           L  L+ L +  + +T+ G+  LK L  L+ LNL    +     + LS L SL  L+L R 
Sbjct: 144 LDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANVLSELTSLTTLHLGRN 203

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           ++SD G   F+K+ +L +L    N+ T
Sbjct: 204 EISDVGLASFNKLNNLTILTYQRNKTT 230



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L  L NLT+L     N I+ +GM++   L  L  L L R T    GL  LK L  L  LN
Sbjct: 117 LRSLKNLTTLHIV-GNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLN 175

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N + D     LS LT+L +L +  ++++D G+A    L  LT+L  +    T A  
Sbjct: 176 LIHSN-LNDDAANVLSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGE 234

Query: 125 DSL 127
           ++L
Sbjct: 235 EAL 237


>gi|112959468|gb|ABI27261.1| internalin A [Listeria monocytogenes]
          Length = 730

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 68  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 122

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 123 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 171

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 172 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 227

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 228 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 283

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 284 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 341

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 342 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 389



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 2   QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 61

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 62  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 116

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 117 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 171

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 172 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 225

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 226 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 281

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 282 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 328

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 329 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 364


>gi|223698643|gb|ACN19002.1| internalin A [Listeria monocytogenes]
 gi|223698646|gb|ACN19004.1| internalin A [Listeria monocytogenes]
 gi|223698670|gb|ACN19020.1| internalin A [Listeria monocytogenes]
 gi|223698673|gb|ACN19022.1| internalin A [Listeria monocytogenes]
 gi|223698718|gb|ACN19052.1| internalin A [Listeria monocytogenes]
 gi|223698754|gb|ACN19076.1| internalin A [Listeria monocytogenes]
 gi|223698757|gb|ACN19078.1| internalin A [Listeria monocytogenes]
 gi|223698796|gb|ACN19104.1| internalin A [Listeria monocytogenes]
 gi|223698826|gb|ACN19124.1| internalin A [Listeria monocytogenes]
 gi|223698829|gb|ACN19126.1| internalin A [Listeria monocytogenes]
 gi|223698832|gb|ACN19128.1| internalin A [Listeria monocytogenes]
 gi|223698862|gb|ACN19148.1| internalin A [Listeria monocytogenes]
 gi|223698895|gb|ACN19170.1| internalin A [Listeria monocytogenes]
 gi|223698925|gb|ACN19190.1| internalin A [Listeria monocytogenes]
 gi|223698928|gb|ACN19192.1| internalin A [Listeria monocytogenes]
 gi|223698931|gb|ACN19194.1| internalin A [Listeria monocytogenes]
 gi|223698934|gb|ACN19196.1| internalin A [Listeria monocytogenes]
 gi|223698937|gb|ACN19198.1| internalin A [Listeria monocytogenes]
 gi|223698940|gb|ACN19200.1| internalin A [Listeria monocytogenes]
 gi|223698943|gb|ACN19202.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|371942136|gb|AEX60880.1| internaline [Listeria monocytogenes]
          Length = 789

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|313485072|gb|ADR53007.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|130774819|gb|ABO32422.1| InlA [Listeria monocytogenes]
 gi|167861894|gb|ACA05646.1| InlA [Listeria monocytogenes]
 gi|167861946|gb|ACA05672.1| InlA [Listeria monocytogenes]
 gi|167861948|gb|ACA05673.1| InlA [Listeria monocytogenes]
 gi|194239402|emb|CAQ76841.1| internalin A [Listeria monocytogenes]
 gi|298360052|gb|ADI77605.1| internalin A [Listeria monocytogenes]
 gi|298360164|gb|ADI77661.1| internalin A [Listeria monocytogenes]
 gi|298360372|gb|ADI77765.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|294358395|gb|ADE73850.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|223698892|gb|ACN19168.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|66807643|ref|XP_637544.1| hypothetical protein DDB_G0286583 [Dictyostelium discoideum AX4]
 gi|60465980|gb|EAL64047.1| hypothetical protein DDB_G0286583 [Dictyostelium discoideum AX4]
          Length = 722

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 162/326 (49%), Gaps = 21/326 (6%)

Query: 84  NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 143
           NLK+L +  +++TD GI  LKGL  L  L L     T   L  L  L  L  L++++C +
Sbjct: 375 NLKTLDLRDNRITDVGIRNLKGLLNLEELYLGSTGCTDIGLALLCNLLKLKTLDVSKCNI 434

Query: 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 202
           +D   +   +   LK L L   ++TD+ +  +  L NL  L + +C  I ++ L  L  L
Sbjct: 435 TDSSMDIICRFTELKFLYLSGTQVTDKGINTISKLPNLIQLYVSNCLRITNQSLFFLAYL 494

Query: 203 -CNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-D 259
              LK L++  T++G +G   L     L+ + L     I+D ++  L  LS+L+ L+L D
Sbjct: 495 GKTLKLLDIFQTKIGLNGFIQLRMFKQLQFLVLPGRDSINDATIGHLNSLSNLRKLDLSD 554

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
            R I+D  L+ LT+L  LT L L   +I+D+  + + + K + SLE+     T+   + +
Sbjct: 555 YRNISD--LSPLTNLQSLTELLLSNTKISDN--SIINSIKTMDSLEVLSLNKTEVTTEGV 610

Query: 320 KDLSSLTLLNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN----- 373
             L +L L +LS +    D K+L  +  +  L  L++S + IT   + +LKP+ +     
Sbjct: 611 SQLVNLNLTSLSLSSTKIDGKSLYYLGQMKSLQKLDISFNDITDNSMDYLKPIADTLSHI 670

Query: 374 -------LRSLTLESCKVTANDIKRL 392
                   RSL + + K+    +K +
Sbjct: 671 DLRGTDTFRSLHMFNEKIVRPPVKNI 696



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 153/314 (48%), Gaps = 39/314 (12%)

Query: 18  RNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 75
           R+N IT  G++   GL+NL +L L    CT I  GL  L  L+KL++L++  CN ITDS 
Sbjct: 382 RDNRITDVGIRNLKGLLNLEELYLGSTGCTDI--GLALLCNLLKLKTLDVSKCN-ITDSS 438

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLF 134
           M  +   T LK L +S ++VTD GI  +  L  L  L +  C  +T   L  L+ LG   
Sbjct: 439 MDIICRFTELKFLYLSGTQVTDKGINTISKLPNLIQLYVSNCLRITNQSLFFLAYLGK-- 496

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD-SCGIGD 193
                                +LK+L++   +I     + L+    L+ L L     I D
Sbjct: 497 ---------------------TLKLLDIFQTKIGLNGFIQLRMFKQLQFLVLPGRDSIND 535

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN---LSFTGISDGS-LRKLAG 249
             + +L  L NL+ L+LSD +     +  LS LTNL+S+    LS T ISD S +  +  
Sbjct: 536 ATIGHLNSLSNLRKLDLSDYR----NISDLSPLTNLQSLTELLLSNTKISDNSIINSIKT 591

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           + SL+ L+L+  ++T  G++ L +L   +       +I      YL   K+L+ L+I   
Sbjct: 592 MDSLEVLSLNKTEVTTEGVSQLVNLNLTSLSLS-STKIDGKSLYYLGQMKSLQKLDISFN 650

Query: 310 GLTDAGVKHIKDLS 323
            +TD  + ++K ++
Sbjct: 651 DITDNSMDYLKPIA 664



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 147/340 (43%), Gaps = 72/340 (21%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           +Q+L  L +    +T   +D + A G+  Y        S D   +F+ + +  +LN    
Sbjct: 293 IQRLIELMVSSNRLTRKKMDQIVASGARIY--------SLDLSHQFAVVNNDFLLN---- 340

Query: 166 EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
                C  ++  L+N+   N ++   IG +         NLK L+L D ++   G+R+L 
Sbjct: 341 -----CFKYMAELSNVYFRNCENLNDIGLQIFRQPNFEKNLKTLDLRDNRITDVGIRNLK 395

Query: 225 GLTNLESINLSFTG------------------------ISDGSLRKLAGLSSLKSLNLDA 260
           GL NLE + L  TG                        I+D S+  +   + LK L L  
Sbjct: 396 GLLNLEELYLGSTGCTDIGLALLCNLLKLKTLDVSKCNITDSSMDIICRFTELKFLYLSG 455

Query: 261 RQITDTGLAALTSLTGLTH--------------------------LDLFGARITDSGAAY 294
            Q+TD G+  ++ L  L                            LD+F  +I  +G   
Sbjct: 456 TQVTDKGINTISKLPNLIQLYVSNCLRITNQSLFFLAYLGKTLKLLDIFQTKIGLNGFIQ 515

Query: 295 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
           LR FK L+ L + G   + DA + H+  LS+L  L+LS   N++D  L  ++ L  L  L
Sbjct: 516 LRMFKQLQFLVLPGRDSINDATIGHLNSLSNLRKLDLSDYRNISD--LSPLTNLQSLTEL 573

Query: 354 NVSNSRIT-SAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
            +SN++I+ ++ +  +K + +L  L+L   +VT   + +L
Sbjct: 574 LLSNTKISDNSIINSIKTMDSLEVLSLNKTEVTTEGVSQL 613


>gi|298359932|gb|ADI77545.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|223698655|gb|ACN19010.1| internalin A [Listeria monocytogenes]
 gi|223698913|gb|ACN19182.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|219821366|gb|ACL37822.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 341 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 376


>gi|320169490|gb|EFW46389.1| hypothetical protein CAOG_04357 [Capsaspora owczarzaki ATCC 30864]
          Length = 620

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 132/302 (43%), Gaps = 5/302 (1%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLM 58
           +T   SG+   T   +  NN I +    AF+GL  L  + LD  + T I         L 
Sbjct: 48  LTAIPSGIPVTTRALYLSNNQIASIPAYAFSGLTALTWLYLDSNQITSISASA--FSDLT 105

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
            LE L ++  N IT       +GLT +  L ++ +++T        GL  L  L L    
Sbjct: 106 SLEQLRMEE-NQITSISDGAFTGLTAVLELGLNRNQITSISANAFTGLTGLHFLELSNNQ 164

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +T+      +++ +L  L L + +++      F+ + +LK L L  N IT       +GL
Sbjct: 165 LTSIPSSVFASVTTLLDLLLYKNRITSIPTSAFTTLTALKTLRLYDNPITSISANAFEGL 224

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           + L  L+L S  I      + TGL  L+ L L   Q+ +      +GLT ++++ L    
Sbjct: 225 SALTVLHLSSNHITSILPSSFTGLTALEALLLDKNQISNIPASAFTGLTAMQTLYLDSNR 284

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           I+  S     GL++L  + LD+ QIT     A T LT LT+L L G   T       +  
Sbjct: 285 ITSISTNAFTGLTALTYMYLDSNQITRIPANAFTGLTALTYLTLDGNPFTTLPPGLFKGL 344

Query: 299 KN 300
            N
Sbjct: 345 PN 346



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 1/229 (0%)

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
           + L L  N+I         GLT L  L LDS  I        + L +L+ L + + Q+ S
Sbjct: 60  RALYLSNNQIASIPAYAFSGLTALTWLYLDSNQITSISASAFSDLTSLEQLRMEENQITS 119

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
                 +GLT +  + L+   I+  S     GL+ L  L L   Q+T    +   S+T L
Sbjct: 120 ISDGAFTGLTAVLELGLNRNQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTL 179

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
             L L+  RIT    +       L++L +    +T       + LS+LT+L+LS N ++T
Sbjct: 180 LDLLLYKNRITSIPTSAFTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSN-HIT 238

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
                  +GLT L +L +  ++I++        L  +++L L+S ++T+
Sbjct: 239 SILPSSFTGLTALEALLLDKNQISNIPASAFTGLTAMQTLYLDSNRITS 287



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 105/255 (41%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
            SGLT L  L +  +++T    +    L  L  L +E   +T+    + + L ++  L L
Sbjct: 77  FSGLTALTWLYLDSNQITSISASAFSDLTSLEQLRMEENQITSISDGAFTGLTAVLELGL 136

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           NR Q++      F+ +  L  L L  N++T         +T L  L L    I       
Sbjct: 137 NRNQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTLLDLLLYKNRITSIPTSA 196

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
            T L  LK L L D  + S       GL+ L  ++LS   I+        GL++L++L L
Sbjct: 197 FTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSNHITSILPSSFTGLTALEALLL 256

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
           D  QI++   +A T LT +  L L   RIT            L  + +    +T      
Sbjct: 257 DKNQISNIPASAFTGLTAMQTLYLDSNRITSISTNAFTGLTALTYMYLDSNQITRIPANA 316

Query: 319 IKDLSSLTLLNLSQN 333
              L++LT L L  N
Sbjct: 317 FTGLTALTYLTLDGN 331



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 1/250 (0%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L L+  Q++      FS + +L  L L  N+IT         LT+LE L ++   I    
Sbjct: 62  LYLSNNQIASIPAYAFSGLTALTWLYLDSNQITSISASAFSDLTSLEQLRMEENQITSIS 121

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
               TGL  +  L L+  Q+ S      +GLT L  + LS   ++       A +++L  
Sbjct: 122 DGAFTGLTAVLELGLNRNQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTLLD 181

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           L L   +IT    +A T+LT L  L L+   IT   A        L  L +    +T   
Sbjct: 182 LLLYKNRITSIPTSAFTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSNHITSIL 241

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
                 L++L  L L +N  +++      +GLT + +L + ++RITS        L  L 
Sbjct: 242 PSSFTGLTALEALLLDKN-QISNIPASAFTGLTAMQTLYLDSNRITSISTNAFTGLTALT 300

Query: 376 SLTLESCKVT 385
            + L+S ++T
Sbjct: 301 YMYLDSNQIT 310



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 1/255 (0%)

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           + S L +L +L L+  Q++      FS + SL+ L +  N+IT        GLT +  L 
Sbjct: 76  AFSGLTALTWLYLDSNQITSISASAFSDLTSLEQLRMEENQITSISDGAFTGLTAVLELG 135

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           L+   I        TGL  L  LELS+ Q+ S      + +T L  + L    I+     
Sbjct: 136 LNRNQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTLLDLLLYKNRITSIPTS 195

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
               L++LK+L L    IT     A   L+ LT L L    IT    +       L +L 
Sbjct: 196 AFTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSNHITSILPSSFTGLTALEALL 255

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
           +    +++        L+++  L L  N  +T  +    +GLT L  + + +++IT    
Sbjct: 256 LDKNQISNIPASAFTGLTAMQTLYLDSN-RITSISTNAFTGLTALTYMYLDSNQITRIPA 314

Query: 366 RHLKPLKNLRSLTLE 380
                L  L  LTL+
Sbjct: 315 NAFTGLTALTYLTLD 329


>gi|404412528|ref|YP_006698115.1| internalin A [Listeria monocytogenes SLCC7179]
 gi|298360000|gb|ADI77579.1| internalin A [Listeria monocytogenes]
 gi|298360676|gb|ADI77917.1| internalin A [Listeria monocytogenes]
 gi|404238227|emb|CBY59628.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC7179]
 gi|443428842|gb|AGC92220.1| internalin A [Listeria monocytogenes]
 gi|443428848|gb|AGC92223.1| internalin A [Listeria monocytogenes]
 gi|443428858|gb|AGC92228.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|298360122|gb|ADI77640.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALISPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|223698613|gb|ACN18982.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 163/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL+ L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T + 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQVG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLIS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 50/180 (27%)

Query: 219 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 274
           G++ + G   L NL  IN S   ++D  +  L  L+ L  + ++  QI D T LA LT+L
Sbjct: 2   GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIADITPLANLTNL 59

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           TGLT   LF  +ITD     L+N  NL  LE+    ++D                     
Sbjct: 60  TGLT---LFNNQITDIDP--LKNLTNLNRLELSSNTISD--------------------- 93

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDIKRL 392
                    IS L+GL+SL     +  S G  +  LKPL NL   TLE   +++N +  +
Sbjct: 94  ---------ISALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKVSDI 137


>gi|340052077|emb|CBY84390.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|223698664|gb|ACN19016.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     L  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----LDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|150371858|dbj|BAF65718.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 182/394 (46%), Gaps = 53/394 (13%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL+ L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G      + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LGSLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
           L     T++   Y  N     +++   G L       I+D  S T  +++   NL   T 
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT--IRDGGSYTEPDIT--WNLPSYTN 467

Query: 342 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375
           E+    +  V++    +  +    + LK + N++
Sbjct: 468 EVSYTFSQPVTIGKGTTTFSGTVTQPLKAIFNVK 501



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 187/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLISLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L  LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LGSLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 50/180 (27%)

Query: 219 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 274
           G++ + G   L NL  IN S   ++D  +  L  L+ L  + ++  QI D T LA LT+L
Sbjct: 87  GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 144

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           TGLT   LF  +ITD     L+N  NL  LE+    ++D                     
Sbjct: 145 TGLT---LFNNQITDLDP--LKNLTNLNRLELSSNTISD--------------------- 178

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDIKRL 392
                    IS L+GL+SL     +  S G  +  LKPL NL   TLE   +++N +  +
Sbjct: 179 ---------ISALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKVSDI 222


>gi|130774815|gb|ABO32420.1| InlA [Listeria monocytogenes]
 gi|194239404|emb|CAQ76842.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|223698622|gb|ACN18988.1| internalin A [Listeria monocytogenes]
 gi|223698634|gb|ACN18996.1| internalin A [Listeria monocytogenes]
 gi|223698694|gb|ACN19036.1| internalin A [Listeria monocytogenes]
 gi|223698712|gb|ACN19048.1| internalin A [Listeria monocytogenes]
 gi|223698745|gb|ACN19070.1| internalin A [Listeria monocytogenes]
 gi|223698751|gb|ACN19074.1| internalin A [Listeria monocytogenes]
 gi|223698766|gb|ACN19084.1| internalin A [Listeria monocytogenes]
 gi|223698769|gb|ACN19086.1| internalin A [Listeria monocytogenes]
 gi|223698772|gb|ACN19088.1| internalin A [Listeria monocytogenes]
 gi|223698775|gb|ACN19090.1| internalin A [Listeria monocytogenes]
 gi|223698778|gb|ACN19092.1| internalin A [Listeria monocytogenes]
 gi|223698787|gb|ACN19098.1| internalin A [Listeria monocytogenes]
 gi|223698793|gb|ACN19102.1| internalin A [Listeria monocytogenes]
 gi|223698799|gb|ACN19106.1| internalin A [Listeria monocytogenes]
 gi|223698802|gb|ACN19108.1| internalin A [Listeria monocytogenes]
 gi|223698805|gb|ACN19110.1| internalin A [Listeria monocytogenes]
 gi|223698817|gb|ACN19118.1| internalin A [Listeria monocytogenes]
 gi|223698859|gb|ACN19146.1| internalin A [Listeria monocytogenes]
 gi|223698865|gb|ACN19150.1| internalin A [Listeria monocytogenes]
 gi|223698979|gb|ACN19226.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|294358389|gb|ADE73847.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|22347572|gb|AAM95931.1| internalin A precursor [Listeria monocytogenes]
          Length = 741

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 82  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 136

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 137 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 185

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 186 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 241

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 242 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 297

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 298 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 355

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 356 LNDQAWTNPPVNYKTNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 180/361 (49%), Gaps = 47/361 (13%)

Query: 26  GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD----SDMKPLSG 81
           G+K+  GL  L  L     T+I+ G   L  +  L+ L  K  + + +    +D+ PL+ 
Sbjct: 31  GIKSIDGLEYLNNL-----TQINFGFNQLTDITPLKDL-TKLVDIVMNNNQITDISPLAN 84

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGSLFYLNLNR 140
           LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L +L  L+   
Sbjct: 85  LTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTNLQQLSFGN 139

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
            Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I D  +  L 
Sbjct: 140 -QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLG 192

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
            L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ L  L L A
Sbjct: 193 ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGA 248

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
            QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++D     I 
Sbjct: 249 NQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD-----IS 299

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLKPLKNLRSL 377
            +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L PL NL  +
Sbjct: 300 PVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLTPLANLTRI 351

Query: 378 T 378
           T
Sbjct: 352 T 352


>gi|443428838|gb|AGC92218.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|219821255|gb|ACL37748.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|428313363|ref|YP_007124340.1| Leucine Rich Repeat (LRR)-containing protein [Microcoleus sp. PCC
           7113]
 gi|428254975|gb|AFZ20934.1| Leucine Rich Repeat (LRR)-containing protein [Microcoleus sp. PCC
           7113]
          Length = 254

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 89/158 (56%), Gaps = 15/158 (9%)

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L  L+   +L  L L+  Q++D      +++ +LK L L  ++ITD  L  L GLT LE 
Sbjct: 88  LTPLAGFTNLEVLILDSNQITD--VTPLARLTNLKDLTLAGSQITD--LTPLAGLTKLEV 143

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           L L+S  I D  +  L GL NLK L+L   Q+    L  L+GL NLE+++LS   I+D  
Sbjct: 144 LYLESNQIKD--INPLAGLANLKTLQLMYNQIAD--LTPLAGLKNLEALHLSGNQITD-- 197

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
           +  L GL +LK LNLD  QITD     +T L GL +LD
Sbjct: 198 ITPLGGLKNLKVLNLDNNQITD-----ITPLAGLANLD 230



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 14/168 (8%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           +D+ PL+G TNL+ L +  +++TD + +A L  L+ LT   L G  +T   L  L+ L  
Sbjct: 86  TDLTPLAGFTNLEVLILDSNQITDVTPLARLTNLKDLT---LAGSQITD--LTPLAGLTK 140

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L L   Q+ D      + + +LK L L +N+I D  L  L GL NLE+L+L    I 
Sbjct: 141 LEVLYLESNQIKD--INPLAGLANLKTLQLMYNQIAD--LTPLAGLKNLEALHLSGNQIT 196

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           D  +  L GL NLK L L + Q+  + +  L+GL NL+S+ +    I+
Sbjct: 197 D--ITPLGGLKNLKVLNLDNNQI--TDITPLAGLANLDSLYVPGNPIT 240



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 97/197 (49%), Gaps = 39/197 (19%)

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           +ITD  L  L G TNLE L LDS  I D  +  L  L NLK L L+ +Q+  + L  L+G
Sbjct: 84  QITD--LTPLAGFTNLEVLILDSNQITD--VTPLARLTNLKDLTLAGSQI--TDLTPLAG 137

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           LT LE + L    I D  +  LAGL++LK+L L   QI D     LT L GL        
Sbjct: 138 LTKLEVLYLESNQIKD--INPLAGLANLKTLQLMYNQIAD-----LTPLAGL-------- 182

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
                        KNL +L + G  +TD  +  +  L +L +LNL  N  +TD T   ++
Sbjct: 183 -------------KNLEALHLSGNQITD--ITPLGGLKNLKVLNLDNN-QITDIT--PLA 224

Query: 346 GLTGLVSLNVSNSRITS 362
           GL  L SL V  + IT 
Sbjct: 225 GLANLDSLYVPGNPITQ 241



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 91/196 (46%), Gaps = 45/196 (22%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+G +NL  L    +N IT   +   A L NL  L L         L  L GL KLE L 
Sbjct: 91  LAGFTNLEVL-ILDSNQIT--DVTPLARLTNLKDLTLAGSQITD--LTPLAGLTKLEVLY 145

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           ++  N I   D+ PL+GL NLK+LQ+  +++ D  +  L GL+ L  L+L G  +T    
Sbjct: 146 LE-SNQI--KDINPLAGLANLKTLQLMYNQIAD--LTPLAGLKNLEALHLSGNQIT---- 196

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             ++ LG L                      +LKVLNL  N+ITD  +  L GL NL+SL
Sbjct: 197 -DITPLGGL---------------------KNLKVLNLDNNQITD--ITPLAGLANLDSL 232

Query: 185 NLD-------SCGIGD 193
            +        +C I D
Sbjct: 233 YVPGNPITQRTCPITD 248


>gi|223698682|gb|ACN19028.1| internalin A [Listeria monocytogenes]
          Length = 712

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 107

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 108 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 158/309 (51%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L S
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTS 102

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 103 LQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|85679234|gb|ABC72033.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 160/348 (45%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 137 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 240

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 241 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 296

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 297 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 352

Query: 242 GS--------------------LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
            S                    +  LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 353 ISPVSNLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 410

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 411 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 184/392 (46%), Gaps = 83/392 (21%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 53  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 112

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 113 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 167

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 168 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 223

Query: 174 HLKGLTNLESL-----------------NLDSCGIGDEGLVN---LTGLCNLKCLELSDT 213
            L  LTNLESL                 NLD   +    L +   L  L NL  L+L++ 
Sbjct: 224 -LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 282

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
           Q+  S L  LSGLT L  + L    IS+  +  LAGL++L +L L+  Q+ D  ++ +++
Sbjct: 283 QI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISN 336

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           L  LT+L L+   I+D   + + N   L+ L      ++D  V  + +L+++  L+   N
Sbjct: 337 LKNLTYLTLYFNNISD--ISPVSNLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHN 392

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
                     IS LT L +L    +RIT  GL
Sbjct: 393 Q---------ISDLTPLANL----TRITQLGL 411


>gi|290350830|dbj|BAI78336.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LTPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LTPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|386052707|ref|YP_005970265.1| internalin A [Listeria monocytogenes Finland 1998]
 gi|130774801|gb|ABO32414.1| InlA [Listeria monocytogenes]
 gi|130774805|gb|ABO32415.1| InlA [Listeria monocytogenes]
 gi|130774807|gb|ABO32416.1| InlA [Listeria monocytogenes]
 gi|150371724|dbj|BAF65677.1| internalin A [Listeria monocytogenes]
 gi|150371780|dbj|BAF65679.1| internalin A [Listeria monocytogenes]
 gi|150371784|dbj|BAF65681.1| internalin A [Listeria monocytogenes]
 gi|150371788|dbj|BAF65683.1| internalin A [Listeria monocytogenes]
 gi|150371790|dbj|BAF65684.1| internalin A [Listeria monocytogenes]
 gi|150371792|dbj|BAF65685.1| internalin A [Listeria monocytogenes]
 gi|150371798|dbj|BAF65688.1| internalin A [Listeria monocytogenes]
 gi|150371802|dbj|BAF65690.1| internalin A [Listeria monocytogenes]
 gi|150371808|dbj|BAF65693.1| internalin A [Listeria monocytogenes]
 gi|150371814|dbj|BAF65696.1| internalin A [Listeria monocytogenes]
 gi|150371818|dbj|BAF65698.1| internalin A [Listeria monocytogenes]
 gi|150371824|dbj|BAF65701.1| internalin A [Listeria monocytogenes]
 gi|150371830|dbj|BAF65704.1| internalin A [Listeria monocytogenes]
 gi|150371832|dbj|BAF65705.1| internalin A [Listeria monocytogenes]
 gi|150371834|dbj|BAF65706.1| internalin A [Listeria monocytogenes]
 gi|150371836|dbj|BAF65707.1| internalin A [Listeria monocytogenes]
 gi|150371838|dbj|BAF65708.1| internalin A [Listeria monocytogenes]
 gi|150371844|dbj|BAF65711.1| internalin A [Listeria monocytogenes]
 gi|150371848|dbj|BAF65713.1| internalin A [Listeria monocytogenes]
 gi|150371850|dbj|BAF65714.1| internalin A [Listeria monocytogenes]
 gi|150371854|dbj|BAF65716.1| internalin A [Listeria monocytogenes]
 gi|150371864|dbj|BAF65721.1| internalin A [Listeria monocytogenes]
 gi|150371870|dbj|BAF65724.1| internalin A [Listeria monocytogenes]
 gi|290350828|dbj|BAI78335.1| internalin A [Listeria monocytogenes]
 gi|290350832|dbj|BAI78337.1| internalin A [Listeria monocytogenes]
 gi|290350834|dbj|BAI78338.1| internalin A [Listeria monocytogenes]
 gi|290350840|dbj|BAI78341.1| internalin A [Listeria monocytogenes]
 gi|298359802|gb|ADI77480.1| internalin A [Listeria monocytogenes]
 gi|298359828|gb|ADI77493.1| internalin A [Listeria monocytogenes]
 gi|298359876|gb|ADI77517.1| internalin A [Listeria monocytogenes]
 gi|298359878|gb|ADI77518.1| internalin A [Listeria monocytogenes]
 gi|298359918|gb|ADI77538.1| internalin A [Listeria monocytogenes]
 gi|298359964|gb|ADI77561.1| internalin A [Listeria monocytogenes]
 gi|298359966|gb|ADI77562.1| internalin A [Listeria monocytogenes]
 gi|298360014|gb|ADI77586.1| internalin A [Listeria monocytogenes]
 gi|298360038|gb|ADI77598.1| internalin A [Listeria monocytogenes]
 gi|298360084|gb|ADI77621.1| internalin A [Listeria monocytogenes]
 gi|298360104|gb|ADI77631.1| internalin A [Listeria monocytogenes]
 gi|298360134|gb|ADI77646.1| internalin A [Listeria monocytogenes]
 gi|298360170|gb|ADI77664.1| internalin A [Listeria monocytogenes]
 gi|298360178|gb|ADI77668.1| internalin A [Listeria monocytogenes]
 gi|298360214|gb|ADI77686.1| internalin A [Listeria monocytogenes]
 gi|298360242|gb|ADI77700.1| internalin A [Listeria monocytogenes]
 gi|298360244|gb|ADI77701.1| internalin A [Listeria monocytogenes]
 gi|298360254|gb|ADI77706.1| internalin A [Listeria monocytogenes]
 gi|298360278|gb|ADI77718.1| internalin A [Listeria monocytogenes]
 gi|298360310|gb|ADI77734.1| internalin A [Listeria monocytogenes]
 gi|298360334|gb|ADI77746.1| internalin A [Listeria monocytogenes]
 gi|298360338|gb|ADI77748.1| internalin A [Listeria monocytogenes]
 gi|298360376|gb|ADI77767.1| internalin A [Listeria monocytogenes]
 gi|298360384|gb|ADI77771.1| internalin A [Listeria monocytogenes]
 gi|298360436|gb|ADI77797.1| internalin A [Listeria monocytogenes]
 gi|298360532|gb|ADI77845.1| internalin A [Listeria monocytogenes]
 gi|298360542|gb|ADI77850.1| internalin A [Listeria monocytogenes]
 gi|298360552|gb|ADI77855.1| internalin A [Listeria monocytogenes]
 gi|298360564|gb|ADI77861.1| internalin A [Listeria monocytogenes]
 gi|298360568|gb|ADI77863.1| internalin A [Listeria monocytogenes]
 gi|298360596|gb|ADI77877.1| internalin A [Listeria monocytogenes]
 gi|298360666|gb|ADI77912.1| internalin A [Listeria monocytogenes]
 gi|298360710|gb|ADI77934.1| internalin A [Listeria monocytogenes]
 gi|346645358|gb|AEO37983.1| internalin A [Listeria monocytogenes Finland 1998]
 gi|443428778|gb|AGC92188.1| internalin A [Listeria monocytogenes]
 gi|443428804|gb|AGC92201.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|290350826|dbj|BAI78334.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 66/392 (16%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +TD                    +D+ PL+ LTNL  L +  +++TD     L  L+ LT
Sbjct: 110 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----LDPLKNLT 164

Query: 111 LLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
            LN LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D
Sbjct: 165 NLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 221

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             +  L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL
Sbjct: 222 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 275

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
             ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D
Sbjct: 276 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 331

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
              + + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  
Sbjct: 332 --ISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLAN 381

Query: 350 LVSLNVSNSRITSAG---LRHLKPLKNLRSLT 378
           L ++N       SAG   +  L PL NL  +T
Sbjct: 382 LTNIN-----WLSAGHNQISDLTPLANLTRIT 408


>gi|67473770|ref|XP_652634.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56469505|gb|EAL47248.1| leucine rich repeat protein [Entamoeba histolytica HM-1:IMSS]
 gi|449707794|gb|EMD47387.1| Fbox/leucine rich repeat-containing protein [Entamoeba histolytica
           KU27]
          Length = 657

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 159/363 (43%), Gaps = 35/363 (9%)

Query: 47  IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 106
           +   + N++    L SL I     ITDSD+  +  LT LK L IS  K     I  +  +
Sbjct: 154 VSESIQNIRKYTSLTSLQIY---NITDSDIPSIGKLTGLKKLSISSKKFV-GKIEDMIDV 209

Query: 107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL---------------SDDGCEKF 151
            +LT L +   P+      +L     L ++   RC L                 DG    
Sbjct: 210 SQLTSLEISNAPLGPEFYYNLYLFPYLVFIGFTRCHLPISGVSAQTPLSQLSPSDGFIYL 269

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL-TGLC--NLKC 207
           +   SL+ L L  +E+T+  L  L  + NL  ++L  C  + D  L    TG    +L+ 
Sbjct: 270 AGCNSLRYLYLNESEVTNYHLDVLARMDNLLGISLKGCPTLSDYSLTPFKTGPIRKSLEE 329

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL----DARQI 263
           L +SDT V   GL+ ++ L  L  +++S     DG ++ L+ L+SLK L +    +    
Sbjct: 330 LNISDTMVTHIGLQVIARLKYLRVLDISHC---DG-IKILSPLNSLKYLEVLRLSNVHIN 385

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSG--AAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           +DT   A           L  AR  D          F NL S+ +    +T  GV+ ++ 
Sbjct: 386 SDTLQDAFRIPPKYLQQLLVDARPIDDPLLTVICSKFPNLVSVNLKESQITSRGVEALQM 445

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLE 380
           +  L  ++ S+  ++ D+  E +S +T L +++  + + I+  G+  L+PL+ LR L   
Sbjct: 446 VKYLRYVDFSKT-SVDDQVFEYLSKITSLETISFEDCQNISGEGVHVLEPLRGLRVLNFN 504

Query: 381 SCK 383
            CK
Sbjct: 505 GCK 507



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 149/327 (45%), Gaps = 20/327 (6%)

Query: 78  PLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           P+SG+    S Q   S+++ S G  YL G   L  L L    VT   LD L+ + +L  +
Sbjct: 247 PISGV----SAQTPLSQLSPSDGFIYLAGCNSLRYLYLNESEVTNYHLDVLARMDNLLGI 302

Query: 137 NLNRCQ-LSDDGCEKFSKIG----SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  C  LSD     F K G    SL+ LN+    +T   L  +  L  L  L++  C  
Sbjct: 303 SLKGCPTLSDYSLTPF-KTGPIRKSLEELNISDTMVTHIGLQVIARLKYLRVLDISHCD- 360

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN--LESINLSFTGISDGSLRKL-A 248
           G + L  L  L  L+ L LS+  + S  L+    +    L+ + +    I D  L  + +
Sbjct: 361 GIKILSPLNSLKYLEVLRLSNVHINSDTLQDAFRIPPKYLQQLLVDARPIDDPLLTVICS 420

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEI 306
              +L S+NL   QIT  G+ AL  +  L ++D     + D    YL    +L   S E 
Sbjct: 421 KFPNLVSVNLKESQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYLSKITSLETISFED 480

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGL 365
           C   ++  GV  ++ L  L +LN +   N ++ +L+ +  L+ + +L VS + +I     
Sbjct: 481 C-QNISGEGVHVLEPLRGLRVLNFNGCKNFSEYSLKEMEDLS-VETLRVSGANQIGMEAW 538

Query: 366 RHLKPLKNLRSLTLESCKVTANDIKRL 392
           +++  ++ L+ L L    V  N I+ +
Sbjct: 539 KYIAQIEQLKRLDLSFTSVEDNGIQEM 565



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 142/328 (43%), Gaps = 39/328 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAF-AGLI--NLVKLDLERCTRIHGGLVNLKGLMKLE 61
           L+ + NL  +S +    ++   +  F  G I  +L +L++      H GL  +  L  L 
Sbjct: 293 LARMDNLLGISLKGCPTLSDYSLTPFKTGPIRKSLEELNISDTMVTHIGLQVIARLKYLR 352

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPV 119
            L+I  C+ I    + PL+ L  L+ L++S   +    +  A+    + L  L ++  P+
Sbjct: 353 VLDISHCDGI--KILSPLNSLKYLEVLRLSNVHINSDTLQDAFRIPPKYLQQLLVDARPI 410

Query: 120 TAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
               L  + S   +L  +NL   Q++  G E    +  L+ ++     + D+   +L  +
Sbjct: 411 DDPLLTVICSKFPNLVSVNLKESQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYLSKI 470

Query: 179 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCL--------------ELSD----------- 212
           T+LE+++ + C  I  EG+  L  L  L+ L              E+ D           
Sbjct: 471 TSLETISFEDCQNISGEGVHVLEPLRGLRVLNFNGCKNFSEYSLKEMEDLSVETLRVSGA 530

Query: 213 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 272
            Q+G    ++++ +  L+ ++LSFT + D  ++++     L+ + L   +ITD  +  L 
Sbjct: 531 NQIGMEAWKYIAQIEQLKRLDLSFTSVEDNGIQEMLKSKWLEVIYLRHTKITDKSIETLL 590

Query: 273 SLTGLTHLDLFGARITDSGAAYLRNFKN 300
               +  +D   AR T+    Y  NF N
Sbjct: 591 CCNLIRKID---ARETNVKKQY--NFAN 613


>gi|290979617|ref|XP_002672530.1| predicted protein [Naegleria gruberi]
 gi|284086107|gb|EFC39786.1| predicted protein [Naegleria gruberi]
          Length = 401

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 121/239 (50%), Gaps = 12/239 (5%)

Query: 148 CEKFSKIGSLKVLNLGFNEITD---ECLVHLKGLTNLE-SLNLDSCGIGDEGLVNLTGLC 203
           C+ F+ +  +  LN+  N   +   + +  LK LTNL+ S+NL    IGDEG+  L  L 
Sbjct: 101 CQLFNLMKDISTLNVSENTFENGHCKYIGQLKHLTNLDISINL----IGDEGVGYLRKLK 156

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
            L  L +S+  +G  G +++  +  L  +N++   I    ++ L  L  L++L++    I
Sbjct: 157 QLTNLNISNNMIGEKGAQYIGKMKQLTCLNINSNHIGSEGVKFLKELKELRTLDMVYCYI 216

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
            + G   L+ +  LTHLD+    I + GA YL   K L  L      L D  V+++  L 
Sbjct: 217 GEVGAKYLSEMKQLTHLDVECNNI-NGGAKYLGELKELTYLNAKYNILGD-DVRYLSRLE 274

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
            LT LN++ N  ++ K  + IS +  LV+LN+ ++ I   G + +  +K L  L + SC
Sbjct: 275 LLTDLNVANN-GISAKGAKFISEMNRLVNLNIGHNNIGKEGAKFISQMKKLTCLDI-SC 331



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 140/305 (45%), Gaps = 10/305 (3%)

Query: 33  LINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 91
           L N+  L + R  RI      L  LMK + +LN+   N   +   K +  L +L +L IS
Sbjct: 82  LQNIQSLTVNRRNRIIAFDCQLFNLMKDISTLNVSE-NTFENGHCKYIGQLKHLTNLDIS 140

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 151
            + + D G+ YL+ L++LT LN+    +       +  +  L  LN+N   +  +G +  
Sbjct: 141 INLIGDEGVGYLRKLKQLTNLNISNNMIGEKGAQYIGKMKQLTCLNINSNHIGSEGVKFL 200

Query: 152 SKIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
            ++  L+ L++ +    E+  + L  +K LT+L+      C   + G   L  L  L  L
Sbjct: 201 KELKELRTLDMVYCYIGEVGAKYLSEMKQLTHLDV----ECNNINGGAKYLGELKELTYL 256

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
                 +G   +R+LS L  L  +N++  GIS    + ++ ++ L +LN+    I   G 
Sbjct: 257 NAKYNILGDD-VRYLSRLELLTDLNVANNGISAKGAKFISEMNRLVNLNIGHNNIGKEGA 315

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
             ++ +  LT LD+    I D GA  +   K L SL I    +   G  +I +++ LT L
Sbjct: 316 KFISQMKKLTCLDISCNSIQDEGAKCISEMKQLTSLNINSNNINKKGANYIAEMNQLTYL 375

Query: 329 NLSQN 333
            +  N
Sbjct: 376 KIRFN 380



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 4/249 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L  L  LT+L+   NN I  +G +    +  L  L++        G+  LK L +L +L+
Sbjct: 152 LRKLKQLTNLNIS-NNMIGEKGAQYIGKMKQLTCLNINSNHIGSEGVKFLKELKELRTLD 210

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           + +C  I +   K LS +  L  L + C+ + + G  YL  L++LT LN +   +    +
Sbjct: 211 MVYC-YIGEVGAKYLSEMKQLTHLDVECNNI-NGGAKYLGELKELTYLNAK-YNILGDDV 267

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
             LS L  L  LN+    +S  G +  S++  L  LN+G N I  E    +  +  L  L
Sbjct: 268 RYLSRLELLTDLNVANNGISAKGAKFISEMNRLVNLNIGHNNIGKEGAKFISQMKKLTCL 327

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           ++    I DEG   ++ +  L  L ++   +   G  +++ +  L  + + F    +G+ 
Sbjct: 328 DISCNSIQDEGAKCISEMKQLTSLNINSNNINKKGANYIAEMNQLTYLKIRFNIGDNGAR 387

Query: 245 RKLAGLSSL 253
             L  L +L
Sbjct: 388 NILKQLPNL 396


>gi|219821387|gb|ACL37836.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNPPVNYKTNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 180/361 (49%), Gaps = 47/361 (13%)

Query: 26  GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD----SDMKPLSG 81
           G+K+  GL  L  L     T+I+ G   L  +  L+ L  K  + + +    +D+ PL+ 
Sbjct: 29  GIKSIDGLEYLNNL-----TQINFGFNQLTDITPLKDL-TKLVDIVMNNNQITDISPLAN 82

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGSLFYLNLNR 140
           LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L +L  L+   
Sbjct: 83  LTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTNLQQLSFGN 137

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
            Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I D  +  L 
Sbjct: 138 -QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLG 190

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
            L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ L  L L A
Sbjct: 191 ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGA 246

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
            QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++D     I 
Sbjct: 247 NQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD-----IS 297

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLKPLKNLRSL 377
            +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L PL NL  +
Sbjct: 298 PVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLTPLANLTRI 349

Query: 378 T 378
           T
Sbjct: 350 T 350


>gi|47219755|emb|CAG03382.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 388

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 163/331 (49%), Gaps = 54/331 (16%)

Query: 79  LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           + G+ +++SL +  C  +TD+G+  A+++ +  L +LNL  C          S+LG +  
Sbjct: 89  IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRVLNLSLCKQITD-----SSLGRIAQ 143

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDE 194
              N   L   GC   +  G L V                 GL  L+SLNL SC  + D 
Sbjct: 144 YLKNLEVLELGGCSNITNTGLLLVA---------------WGLHRLKSLNLRSCRHVSDV 188

Query: 195 GLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGS 243
           G+ +L+G+         +L+ L L D Q +    L+H+S GL  L+ +NLSF G ISDG 
Sbjct: 189 GIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDGG 248

Query: 244 LRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYLRNFK 299
           +  L+ ++ L SLNL +   I+DTG+   A+ SL  L+ LD+ F  +I D   A++    
Sbjct: 249 MIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKIGDQSLAHIAQ-- 305

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN- 357
                     GL D   + ++ +  L  LN+ Q   +TDK LELI+  LT L  +++   
Sbjct: 306 ----------GLDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGC 355

Query: 358 SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           ++IT  GL  +  L  L+ L L   ++T ++
Sbjct: 356 TKITKRGLERITQLPCLKVLNLGLWQMTESE 386



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 143/301 (47%), Gaps = 60/301 (19%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLK-- 104
           ++G+  +ESLN+  C  +TD+ +    +  + +L+ L +S C ++TDS +     YLK  
Sbjct: 89  IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRVLNLSLCKQITDSSLGRIAQYLKNL 148

Query: 105 ---------------------GLQKLTLLNLEGC-PVTAACLDSLSALG--------SLF 134
                                GL +L  LNL  C  V+   +  LS +         SL 
Sbjct: 149 EVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLSLE 208

Query: 135 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 190
            L L  CQ L+D   +  SK +  LKVLNL F   I+D  ++HL  +T+L SLNL SC  
Sbjct: 209 KLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDGGMIHLSHMTHLCSLNLRSCDN 268

Query: 191 IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
           I D G+++L  G   L  L++S   ++G   L H++             G+ DG  R + 
Sbjct: 269 ISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAHIA------------QGLDDGINRMVR 316

Query: 249 GLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLE 305
            +  LK+LN+    +ITD GL  +   LT LT +DL+G  +IT  G   +     L+ L 
Sbjct: 317 QMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLN 376

Query: 306 I 306
           +
Sbjct: 377 L 377



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 36/232 (15%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNL---- 54
           GL  L SL+ R    ++  G+   +G+        ++L KL L+ C +    L +L    
Sbjct: 170 GLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQK----LTDLSLKH 225

Query: 55  --KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLT 110
             KGL KL+ LN+ +C  I+D  M  LS +T+L SL + SC  ++D+GI +L  G  +L+
Sbjct: 226 VSKGLNKLKVLNLSFCGGISDGGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLS 285

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEIT 168
            L++  C        SL+ +           Q  DDG  +  + +  LK LN+G    IT
Sbjct: 286 GLDVSFCDKIGD--QSLAHIA----------QGLDDGINRMVRQMHELKTLNIGQCGRIT 333

Query: 169 DECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           D+ L  +   LT L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 334 DKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 385


>gi|294358393|gb|ADE73849.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL + G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKEIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKEIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 434


>gi|407849405|gb|EKG04153.1| hypothetical protein TCSYLVIO_004793 [Trypanosoma cruzi]
          Length = 835

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 167/382 (43%), Gaps = 61/382 (15%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E LS L  LT LS   N  IT +G+   +   +L  + L+ C             MKL+ 
Sbjct: 234 ECLSSLQRLTELSLL-NMGITEEGLAFISSCNSLRHIQLDNC-------------MKLQG 279

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           +N              L  L  L++L +S ++V+D GI  L  L+ L  L L      ++
Sbjct: 280 INC-------------LGSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVSFNRLSS 326

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            ++ +  L  L  L++    ++D+GC   +  G ++ L L     +  C+  ++ +  L 
Sbjct: 327 -VEPVLCLDKLLELDITENWVTDEGCAALANCGQIQKLKLA----SCRCVSDVRWICALT 381

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISD 241
           SL                       L+LS T V S+ L+ L+    LE +++ S +G+ D
Sbjct: 382 SLRF---------------------LDLSKTHVRSADLQLLTVCQRLEELHVASCSGVKD 420

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKN 300
            S   + GL SL  L+L    I D G  +L   T LT L L   R +TD    ++   K+
Sbjct: 421 ASF--VEGLLSLGHLDLTDTSIKDAGTQSLRKCTALTFLSLQDCRFLTD--IQFVEPLKD 476

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L +L + G  + DA +  +   + L +L+L     LTD  +  +  L  L SL++S + +
Sbjct: 477 LLNLNLEGTEVVDANIIPLMHCTKLEVLSLRHCLFLTD--VRCLRELKALKSLDLSGTYV 534

Query: 361 TSAGLRHLKPLKNLRSLTLESC 382
           T  G+  +    +L  + L  C
Sbjct: 535 TDEGVSDVSQCISLERIDLSGC 556



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 160/384 (41%), Gaps = 87/384 (22%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           T++L   + LT LS +    +T   ++    L +L+ L+LE    +   ++ L    KLE
Sbjct: 445 TQSLRKCTALTFLSLQDCRFLT--DIQFVEPLKDLLNLNLEGTEVVDANIIPLMHCTKLE 502

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            L+++  +C+  +D++ L  L  LKSL +S + VTD G++ +     L  ++L GC +  
Sbjct: 503 VLSLR--HCLFLTDVRCLRELKALKSLDLSGTYVTDEGVSDVSQCISLERIDLSGCCLIT 560

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
              + L  L +L ++  +R                   +N+                   
Sbjct: 561 H-FEFLRPLTALRHVIADR-------------------MNV------------------- 581

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
               LD  G+G  G V    + + K       ++GS G+     L +L   +L  + I+D
Sbjct: 582 ----LDVTGLGGSGSVERVSIADCK-------RLGSMGMLEAPRLLDL---SLKKSAITD 627

Query: 242 GSLRK-LAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
             +   L    SL+ LNL +   IT+  L+A+  L  LT L +   +IT+   A++    
Sbjct: 628 SGIHSVLLRCHSLRRLNLQNCTSITE--LSAVAQLPSLTELLVRNMKITNKSVAFVARCA 685

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
            L  L++            I D++SL  L+                    LV L++S + 
Sbjct: 686 TLEKLQM-------VECVEITDVNSLKYLH-------------------RLVELDLSRTS 719

Query: 360 ITSAGLRHLKPLKNLRSLTLESCK 383
           +TS G+  L    NL+ L L  C+
Sbjct: 720 VTSGGIVGLARCYNLKKLNLSGCR 743



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 29/165 (17%)

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG 276
           SG+ +L  L+NL ++ L  T +S+  +  L+   SL+ + +++ R +    L  L+SL  
Sbjct: 184 SGVTNLGVLSNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLR--SLECLSSLQR 241

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           LT L L    IT+ G A++ +  +LR +++                          NC +
Sbjct: 242 LTELSLLNMGITEEGLAFISSCNSLRHIQL-------------------------DNC-M 275

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
             + +  +  L GL +L+VS +R++  G+R L  L+NL  L L S
Sbjct: 276 KLQGINCLGSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVS 320


>gi|384252153|gb|EIE25630.1| hypothetical protein COCSUDRAFT_83637 [Coccomyxa subellipsoidea
           C-169]
          Length = 433

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 170/370 (45%), Gaps = 53/370 (14%)

Query: 59  KLESLNIKWCNCI--TDSDMKPLSGLTNLKSLQIS-CSKVTD---SGIAYLKGLQKLTLL 112
           +L++L +  C  +  T+  +     L  LK+L ++ C   TD   +G+A ++GLQKL+L 
Sbjct: 69  ELQALFMDGCEGVNMTNEQVTEAGRLRYLKTLSLAGCRACTDKGLAGLAVIEGLQKLSLS 128

Query: 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD-------------------------- 146
                 +T+  LD L    SL  L+L +C   DD                          
Sbjct: 129 KCNA--LTSRTLDLLQTSSSLISLDLGQCAWVDDSSMALLCNSASLKQLSLADCVRLTNR 186

Query: 147 GCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG------IGDEGLVNL 199
           G +  +K+  ++ LNL G  EI D  +  L  +T+L  LNLD CG      +   G ++ 
Sbjct: 187 GVQSVAKLKCIEALNLSGLREIDDAGVEALAAVTSLRELNLDRCGQVRGLTLAKLGGLHK 246

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 258
             +C+  C+  +D  +G      LSG+T+LE + L     I+D     LA +S+L+ L+L
Sbjct: 247 LSMCDCPCI--ADDSLGC-----LSGVTSLEDLKLDMCDKITDKGAGALASMSALEDLDL 299

Query: 259 DARQITD-TGLAALTSLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICGG-GLTDA 314
              +  D   +  L++L  L  L L G   I   G  +L R    L  L++ G  G+ D 
Sbjct: 300 HRCERLDCEAMRRLSALGQLRSLRLSGCVYIKAEGLGHLARGCPLLSRLDLAGCVGIKDE 359

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
           G++ + ++  L  LN++Q   ++D    +++    +  + V  + I+  GL+ L+    L
Sbjct: 360 GMQALAEMQHLQALNINQCKYVSDAGAAVLATSVSIRDVFVLTTNISQHGLQLLQDALGL 419

Query: 375 RSLTLESCKV 384
           +  T+  C +
Sbjct: 420 QPTTMSPCHL 429



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 10/241 (4%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKL 60
            ++++ L  + +L+      I   G++A A + +L +L+L+RC ++ G  L  L GL KL
Sbjct: 188 VQSVAKLKCIEALNLSGLREIDDAGVEALAAVTSLRELNLDRCGQVRGLTLAKLGGLHKL 247

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP- 118
              +   C CI D  +  LSG+T+L+ L++  C K+TD G   L  +  L  L+L  C  
Sbjct: 248 SMCD---CPCIADDSLGCLSGVTSLEDLKLDMCDKITDKGAGALASMSALEDLDLHRCER 304

Query: 119 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNL-GFNEITDECLVHL 175
           +    +  LSALG L  L L+ C  +  +G    ++    L  L+L G   I DE +  L
Sbjct: 305 LDCEAMRRLSALGQLRSLRLSGCVYIKAEGLGHLARGCPLLSRLDLAGCVGIKDEGMQAL 364

Query: 176 KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
             + +L++LN++ C  + D G   L    +++ + +  T +   GL+ L     L+   +
Sbjct: 365 AEMQHLQALNINQCKYVSDAGAAVLATSVSIRDVFVLTTNISQHGLQLLQDALGLQPTTM 424

Query: 235 S 235
           S
Sbjct: 425 S 425



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 156/327 (47%), Gaps = 37/327 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ +  L  LS  + NA+T++ +       +L+ LDL +C                    
Sbjct: 116 LAVIEGLQKLSLSKCNALTSRTLDLLQTSSSLISLDLGQCA------------------- 156

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAA 122
             W   + DS M  L    +LK L ++ C ++T+ G+  +  L+ +  LNL G   +  A
Sbjct: 157 --W---VDDSSMALLCNSASLKQLSLADCVRLTNRGVQSVAKLKCIEALNLSGLREIDDA 211

Query: 123 CLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTN 180
            +++L+A+ SL  LNL+RC Q+        +K+G L  L++     I D+ L  L G+T+
Sbjct: 212 GVEALAAVTSLRELNLDRCGQVRG---LTLAKLGGLHKLSMCDCPCIADDSLGCLSGVTS 268

Query: 181 LESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FT 237
           LE L LD C  I D+G   L  +  L+ L+L   + +    +R LS L  L S+ LS   
Sbjct: 269 LEDLKLDMCDKITDKGAGALASMSALEDLDLHRCERLDCEAMRRLSALGQLRSLRLSGCV 328

Query: 238 GISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAY 294
            I    L  LA G   L  L+L     I D G+ AL  +  L  L++   + ++D+GAA 
Sbjct: 329 YIKAEGLGHLARGCPLLSRLDLAGCVGIKDEGMQALAEMQHLQALNINQCKYVSDAGAAV 388

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKD 321
           L    ++R + +    ++  G++ ++D
Sbjct: 389 LATSVSIRDVFVLTTNISQHGLQLLQD 415


>gi|406832462|ref|ZP_11092056.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
          Length = 306

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 8/191 (4%)

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS--CGIGDEGLVNLT 200
           L+ DGC + + +  L  L L      DE L  L  LT L  L+++   CG    G     
Sbjct: 92  LTQDGCRRLASLTKLISLRLAVP--NDEALSDLAALTELGDLSVEGNICG---RGFHRFP 146

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLD 259
               L  L ++  +  S  +R ++    +  +  S+T I+D  LR L   ++ L      
Sbjct: 147 ETSELHSLRIASAKNISDEIRSINTFRGIRRLVFSYTPITDNHLRALRPTVARLFGFEAY 206

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
             +ITD G+     L  L  L L GA ITD+G   +R    LR L +    LTD  +KH+
Sbjct: 207 GSEITDDGVREFQDLPELERLSLVGAHITDTGVMAMRQLPKLRELTLVDNELTDNCIKHL 266

Query: 320 KDLSSLTLLNL 330
           K  S L  ++L
Sbjct: 267 KQFSQLRHVSL 277



 Score = 41.2 bits (95), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 29/220 (13%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           +T  G +  A L  L+ L L         L +L  L +L  L+++   C       P + 
Sbjct: 92  LTQDGCRRLASLTKLISLRL--AVPNDEALSDLAALTELGDLSVEGNICGRGFHRFPET- 148

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 140
            + L SL+I+ +K     I  +   + +  L     P+T   L +L   +  LF      
Sbjct: 149 -SELHSLRIASAKNISDEIRSINTFRGIRRLVFSYTPITDNHLRALRPTVARLFGFEAYG 207

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
            +++DDG  +F                        + L  LE L+L    I D G++ + 
Sbjct: 208 SEITDDGVREF------------------------QDLPELERLSLVGAHITDTGVMAMR 243

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
            L  L+ L L D ++  + ++HL   + L  ++L  T +S
Sbjct: 244 QLPKLRELTLVDNELTDNCIKHLKQFSQLRHVSLCKTKVS 283


>gi|219821354|gb|ACL37814.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  + GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPIAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 188/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ +  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPIAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  +T   L   + T   +    +  +PN V
Sbjct: 341 TPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 376


>gi|219821273|gb|ACL37760.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT ++ L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRISELG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 187/396 (47%), Gaps = 65/396 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDIVMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 NLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D     + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
            PL NL  ++   L   + T   +    +  +PN V
Sbjct: 341 TPLANLTRISELGLNDQEWTNPPVNYKVNVSIPNTV 376


>gi|345480032|ref|XP_003424075.1| PREDICTED: F-box/LRR-repeat protein 14-like [Nasonia vitripennis]
          Length = 567

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 147/280 (52%), Gaps = 26/280 (9%)

Query: 30  FAGLINLVKLDLERCTRIHGGLVNL---KGLMKLESLNIKWCNCITDSDMKPLSG-LTNL 85
           F G+  L  L+L  C  +    +N    +    L  LN+ +C  ITD+ +  ++  L NL
Sbjct: 260 FRGIPKLHSLNLSGCFNMSDAGINSALSQPFSSLTQLNLSYCKHITDASLGKIAQCLKNL 319

Query: 86  KSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALGS-------LFY 135
           ++L +  C+ +T+SG+  +  GL+ L  L+++ C  V+   +  L+ + S       L +
Sbjct: 320 ETLDLGGCTNITNSGLHVIAWGLKSLRRLDVKSCWHVSDQGIGYLAGINSDAGGNLALEH 379

Query: 136 LNLNRCQ-LSDDGCEKFSKIG---SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG 190
           L L   Q L+D+G    S +G   SL+ +NL F  +ITD  + H+  +T+L  L+L +C 
Sbjct: 380 LGLQDVQRLTDEGLRSIS-LGLATSLQSINLSFCVQITDNGMKHIAKITSLRELDLRNCD 438

Query: 191 IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKL 247
           I +  + NL  G   +  L++S   +VG   L+H+S GL NL+S+ LS   ISD  + K+
Sbjct: 439 ISESAMANLAEGGSRISSLDVSFCDKVGDQALQHISQGLFNLKSLGLSACPISDEGIDKI 498

Query: 248 AGLSS-LKSLNL-DARQITDTG-LAALTSLTGLTHLDLFG 284
           A     L++L +    ++TD   L  + S+  L  +DL+G
Sbjct: 499 AKTQQDLETLLIGQCSRLTDKSILTIVESMPRLRSIDLYG 538



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 136/300 (45%), Gaps = 70/300 (23%)

Query: 103 LKGLQKLTLLNLEGC-PVTAACLDSL--SALGSLFYLNLNRCQ-LSDDGCEKFSK-IGSL 157
            +G+ KL  LNL GC  ++ A ++S       SL  LNL+ C+ ++D    K ++ + +L
Sbjct: 260 FRGIPKLHSLNLSGCFNMSDAGINSALSQPFSSLTQLNLSYCKHITDASLGKIAQCLKNL 319

Query: 158 KVLNLG-FNEITDECL-VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN-------LKC 207
           + L+LG    IT+  L V   GL +L  L++ SC  + D+G+  L G+ +       L+ 
Sbjct: 320 ETLDLGGCTNITNSGLHVIAWGLKSLRRLDVKSCWHVSDQGIGYLAGINSDAGGNLALEH 379

Query: 208 LELSDTQ-VGSSGLRHLS-GL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           L L D Q +   GLR +S GL T+L+SINLSF                         QIT
Sbjct: 380 LGLQDVQRLTDEGLRSISLGLATSLQSINLSF-----------------------CVQIT 416

Query: 265 DTGLAALTSLTGLTHLDLFGARITDSGAAYL---------------------------RN 297
           D G+  +  +T L  LDL    I++S  A L                           + 
Sbjct: 417 DNGMKHIAKITSLRELDLRNCDISESAMANLAEGGSRISSLDVSFCDKVGDQALQHISQG 476

Query: 298 FKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNV 355
             NL+SL +    ++D G+  I K    L  L + Q   LTDK+ L ++  +  L S+++
Sbjct: 477 LFNLKSLGLSACPISDEGIDKIAKTQQDLETLLIGQCSRLTDKSILTIVESMPRLRSIDL 536



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 106/199 (53%), Gaps = 16/199 (8%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL-------INLVKLDLERCTRI-HGGL--VNLKG 56
           GL +L  L  +    ++ QG+   AG+       + L  L L+   R+   GL  ++L  
Sbjct: 341 GLKSLRRLDVKSCWHVSDQGIGYLAGINSDAGGNLALEHLGLQDVQRLTDEGLRSISLGL 400

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLE 115
              L+S+N+ +C  ITD+ MK ++ +T+L+ L +    +++S +A L +G  +++ L++ 
Sbjct: 401 ATSLQSINLSFCVQITDNGMKHIAKITSLRELDLRNCDISESAMANLAEGGSRISSLDVS 460

Query: 116 GC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGF-NEITDEC 171
            C  V    L  +S  L +L  L L+ C +SD+G +K +K    L+ L +G  + +TD+ 
Sbjct: 461 FCDKVGDQALQHISQGLFNLKSLGLSACPISDEGIDKIAKTQQDLETLLIGQCSRLTDKS 520

Query: 172 LVHL-KGLTNLESLNLDSC 189
           ++ + + +  L S++L  C
Sbjct: 521 ILTIVESMPRLRSIDLYGC 539


>gi|195029827|ref|XP_001987773.1| GH22100 [Drosophila grimshawi]
 gi|193903773|gb|EDW02640.1| GH22100 [Drosophila grimshawi]
          Length = 550

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 158/302 (52%), Gaps = 28/302 (9%)

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLK 158
           G+  LT LNL GC    A ++   A    L +L  L+L+ C Q++D    + ++ + +L+
Sbjct: 244 GVPALTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLE 302

Query: 159 VLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKC 207
            L LG   N      L+   GL  L  LNL SC  I D+G+ +L G           L+ 
Sbjct: 303 TLELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEF 362

Query: 208 LELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 263
           L L D Q +    L H++ GLT+L+SINLSF   ++D  L+ LA +  L+ LNL +   I
Sbjct: 363 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNI 422

Query: 264 TDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI- 319
           +D G+A LT   +G+  LD+ F  +I+D    ++ +    LRSL +    +TD G+  I 
Sbjct: 423 SDIGMAYLTEGGSGINCLDVSFCDKISDQALTHIAQGLFRLRSLSLNQCHITDQGMLKIA 482

Query: 320 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSL 377
           K L  L  LN+ Q   +TDK L+ L   L+ L ++++   ++++S G+  +  L  L+ L
Sbjct: 483 KSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKL 542

Query: 378 TL 379
            L
Sbjct: 543 NL 544



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 117/245 (47%), Gaps = 40/245 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVN--LKG 56
           GL  L  L+ R    I+ QG+   AG         + L  L L+ C R+    +    +G
Sbjct: 323 GLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEFLGLQDCQRLSDEALGHIAQG 382

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L  L+S+N+ +C  +TDS +K L+ +  L+ L + SC  ++D G+AYL +G   +  L++
Sbjct: 383 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINCLDV 442

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C  ++   L  ++  L  L  L+LN+C ++D G  K +                    
Sbjct: 443 SFCDKISDQALTHIAQGLFRLRSLSLNQCHITDQGMLKIA-------------------- 482

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
              K L  LE+LN+  C  I D+GL  L   L NLK ++L   TQ+ S G+  +  L  L
Sbjct: 483 ---KSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKL 539

Query: 230 ESINL 234
           + +NL
Sbjct: 540 QKLNL 544



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 113/237 (47%), Gaps = 34/237 (14%)

Query: 177 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 227
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 244 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLE 302

Query: 228 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 278
            LE     N++ TG+    L    GL  L+ LNL +   I+D G+  L   +  T     
Sbjct: 303 TLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 358

Query: 279 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 331
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 359 QLEFLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 417

Query: 332 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 385
              N++D  +  L  G +G+  L+VS   +I+   L H+ + L  LRSL+L  C +T
Sbjct: 418 SCDNISDIGMAYLTEGGSGINCLDVSFCDKISDQALTHIAQGLFRLRSLSLNQCHIT 474



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 7/166 (4%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESL 63
            GL++L S++     ++T  G+K  A +  L +L+L  C  I   G+  L +G   +  L
Sbjct: 381 QGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINCL 440

Query: 64  NIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VT 120
           ++ +C+ I+D  +  ++ GL  L+SL ++   +TD G+  + K L +L  LN+  C  +T
Sbjct: 441 DVSFCDKISDQALTHIAQGLFRLRSLSLNQCHITDQGMLKIAKSLHELENLNIGQCSRIT 500

Query: 121 AACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 164
              L +L+  L +L  ++L  C QLS  G +   K+  L+ LNLG 
Sbjct: 501 DKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGL 546


>gi|440802686|gb|ELR23615.1| leucine rich repeat domain containing protein, partial
           [Acanthamoeba castellanii str. Neff]
          Length = 431

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 163/356 (45%), Gaps = 34/356 (9%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN-LKGLMKLESLNIKWCNCITDSDMK 77
            A+    +    G  +L  LDL    RI   GL   LK + +L SL +  C  ITD+ + 
Sbjct: 69  RAVEDTWLDVLKGYSSLTYLDLSNSYRITDTGLAECLKCMPQLRSLFVDRCKRITDAGLA 128

Query: 78  PL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKL----------------TLLNLEGCPVT 120
           PL +   NL+ + +  + +T   +A L  L+ L                TLL  +  P +
Sbjct: 129 PLGTHCPNLRRVHVGGTMITYYALAALNSLEDLQDVSVNGTRFPDKALYTLLKRKEAPDS 188

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNE-ITDECLV-HLKG 177
            A  D    +  L     +R  + DDG      +G SL  LNL FN  I D   +  L  
Sbjct: 189 WAEED-YGEVRQLTDFQASRTLVRDDGVRLLKGLGASLHTLNLAFNPGIADWSFLGSLAS 247

Query: 178 LTNLE-SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
           LT+L+ SLN+   G  D+   ++  L +L  L LS T++   G+  L  L+ L S+++  
Sbjct: 248 LTHLDISLNV---GFTDQFAADVGKLSSLTLLNLSKTELTDEGIPALMELSQLRSLDVGK 304

Query: 237 TGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
           T I+  +L   LA L +L +L+L    +       LT L  LT     G      G    
Sbjct: 305 TAITHRALGPGLAKLPNLTALSLPYTNVGGKFSRYLTVLHRLTSFKTTGLLELAKG---- 360

Query: 296 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
             + +L +L++    LTD+G+ HI +L++L   N+  N  +T++  EL+  LTGLV
Sbjct: 361 -RYPHLTALDVGCDQLTDSGLAHIGELAALRNFNM-WNTKVTNQGAELVQQLTGLV 414



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 170/409 (41%), Gaps = 79/409 (19%)

Query: 33  LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 92
           +I  + L L R  R+    +       +E+L +     + D+ +  L G ++L  L +S 
Sbjct: 33  VIERILLYLHRTERLTLEALEFFKAFPVETLFLSNIRAVEDTWLDVLKGYSSLTYLDLSN 92

Query: 93  S-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEK 150
           S ++TD+G+A                     CL  +  L SLF   ++RC+ ++D G   
Sbjct: 93  SYRITDTGLA--------------------ECLKCMPQLRSLF---VDRCKRITDAGLAP 129

Query: 151 F-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-------- 201
             +   +L+ +++G   IT   L  L  L +L+ ++++     D+ L  L          
Sbjct: 130 LGTHCPNLRRVHVGGTMITYYALAALNSLEDLQDVSVNGTRFPDKALYTLLKRKEAPDSW 189

Query: 202 -------LCNLKCLELSDTQVGSSGLRHLSGL-TNLESINLSF-TGISDGSLRKLAGLSS 252
                  +  L   + S T V   G+R L GL  +L ++NL+F  GI+D S   L  L+S
Sbjct: 190 AEEDYGEVRQLTDFQASRTLVRDDGVRLLKGLGASLHTLNLAFNPGIADWSF--LGSLAS 247

Query: 253 LKSLNLD-------------------------ARQITDTGLAALTSLTGLTHLDLFGARI 287
           L  L++                            ++TD G+ AL  L+ L  LD+    I
Sbjct: 248 LTHLDISLNVGFTDQFAADVGKLSSLTLLNLSKTELTDEGIPALMELSQLRSLDVGKTAI 307

Query: 288 TDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           T       L    NL +L +     T+ G K  + L+ L  L   +   L    LEL  G
Sbjct: 308 THRALGPGLAKLPNLTALSL---PYTNVGGKFSRYLTVLHRLTSFKTTGL----LELAKG 360

Query: 347 -LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
               L +L+V   ++T +GL H+  L  LR+  + + KVT    + +Q 
Sbjct: 361 RYPHLTALDVGCDQLTDSGLAHIGELAALRNFNMWNTKVTNQGAELVQQ 409



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 147/355 (41%), Gaps = 67/355 (18%)

Query: 72  TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE---GCPVTA------- 121
           TD   K       L +L I   +V +  + YL   ++LTL  LE     PV         
Sbjct: 13  TDESWKAPHIARKLPALPI---EVIERILLYLHRTERLTLEALEFFKAFPVETLFLSNIR 69

Query: 122 ----ACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
                 LD L    SL YL+L N  +++D G                      ECL   K
Sbjct: 70  AVEDTWLDVLKGYSSLTYLDLSNSYRITDTGLA--------------------ECL---K 106

Query: 177 GLTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
            +  L SL +D C  I D GL  L   C NL+ + +  T +    L  L+ L +L+ +++
Sbjct: 107 CMPQLRSLFVDRCKRITDAGLAPLGTHCPNLRRVHVGGTMITYYALAALNSLEDLQDVSV 166

Query: 235 SFTGISDGSL-----RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
           + T   D +L     RK A  S  +    + RQ+TD    A  +L            + D
Sbjct: 167 NGTRFPDKALYTLLKRKEAPDSWAEEDYGEVRQLTD--FQASRTL------------VRD 212

Query: 290 SGAAYLRNF-KNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
            G   L+    +L +L +    G+ D     +  L+SLT L++S N   TD+    +  L
Sbjct: 213 DGVRLLKGLGASLHTLNLAFNPGIADWSF--LGSLASLTHLDISLNVGFTDQFAADVGKL 270

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
           + L  LN+S + +T  G+  L  L  LRSL +    +T   +    ++ LPNL +
Sbjct: 271 SSLTLLNLSKTELTDEGIPALMELSQLRSLDVGKTAITHRALGPGLAK-LPNLTA 324


>gi|254828935|ref|ZP_05233622.1| internalin A [Listeria monocytogenes FSL N3-165]
 gi|130774797|gb|ABO32413.1| InlA [Listeria monocytogenes]
 gi|130774811|gb|ABO32418.1| InlA [Listeria monocytogenes]
 gi|194239388|emb|CAQ76834.1| internalin A [Listeria monocytogenes]
 gi|258601346|gb|EEW14671.1| internalin A [Listeria monocytogenes FSL N3-165]
 gi|298360424|gb|ADI77791.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408


>gi|313485081|gb|ADR53011.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 184/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 171

Query: 115 EGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
               ++  + L  L+ L  LF+ N    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 172 SSNTISDISALSGLTNLQQLFFGN----QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLF 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459


>gi|167861930|gb|ACA05664.1| InlA [Listeria monocytogenes]
 gi|167862036|gb|ACA05717.1| InlA [Listeria monocytogenes]
 gi|194239408|emb|CAQ76844.1| internalin A [Listeria monocytogenes]
 gi|222543296|gb|ACM66668.1| internalin A [Listeria monocytogenes]
 gi|298359976|gb|ADI77567.1| internalin A [Listeria monocytogenes]
 gi|298360582|gb|ADI77870.1| internalin A [Listeria monocytogenes]
 gi|298360712|gb|ADI77935.1| internalin A [Listeria monocytogenes]
 gi|298360716|gb|ADI77937.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 184/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 171

Query: 115 EGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
               ++  + L  L+ L  LF+ N    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 172 SSNTISDISALSGLTNLQQLFFGN----QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 386 N-----WLSAGHNQISDLTPLANLTRIT 408



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLF 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459


>gi|433448864|ref|ZP_20411729.1| Internalin A [Weissella ceti NC36]
 gi|429539253|gb|ELA07290.1| Internalin A [Weissella ceti NC36]
          Length = 1042

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 148/300 (49%), Gaps = 28/300 (9%)

Query: 39  LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVT 96
           L +E     + G+ +L GL   E+ N+KW +   +  S ++PL  + NL  L +  +K  
Sbjct: 68  LKIESLNLTYSGVTDLSGLE--EAKNLKWLDLTGNAISSLEPLGQVHNLSFLSLRFNKTK 125

Query: 97  D-SGIAYLKGLQKLTLLNLEGC-----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 150
           D   +A LK    +  LNL G      P   A +  L+ L +L   N    QL D     
Sbjct: 126 DIPDLAPLK-TTAIKELNLVGNDYGLEPQKMAAISHLTTLETLEMQNNKLTQLPD----- 179

Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
            S++ +L+ L +  N++TD   V  K +  L  L ++S  I D     ++ L NL+ L +
Sbjct: 180 LSQLTNLRFLGVAGNKLTDVSGV--KNMVRLTGLEVNSNQITD--FEPISHLTNLERLHV 235

Query: 211 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLA 269
            + +  SS +  L  LT L+  N S  G+S+  +   AG+  ++SL +D   QI+D  L+
Sbjct: 236 GNNR--SSDISSLKTLTKLKKGNFSQMGLSNEQMTVFAGMKDMESLAIDFNDQISD--LS 291

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLL 328
           +L+ LT LT LD     +T    A L    NL++L      ++D  V K++ +LSSLT+L
Sbjct: 292 SLSQLTNLTTLDFSKDGVT--SLAPLAGLTNLQTLGFSNNKVSDISVLKNMPNLSSLTML 349


>gi|332666302|ref|YP_004449090.1| adenylate cyclase [Haliscomenobacter hydrossis DSM 1100]
 gi|332335116|gb|AEE52217.1| Adenylate cyclase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1448

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 168/335 (50%), Gaps = 49/335 (14%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGS 132
           SD+  L  L NLK L + C  + +  I  L   ++L  L+L    ++    LD L+ L S
Sbjct: 332 SDLDGLDNLKNLKRLYLDCLDLKE--IPSLVTFKQLAHLDLSNNQISEIKNLDKLTQLQS 389

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
              L+L   Q+S+   + F K+  L+ L+LG N+I++  + +L  LT L+SL+L S  I 
Sbjct: 390 ---LDLGNNQISE--IKNFDKLTQLQSLDLGINQISE--IKNLDKLTQLQSLDLGSNQIS 442

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----------- 241
           +  + NL  L  L+ L+L   Q+  S +++L+ LT L+S++L    IS+           
Sbjct: 443 E--IKNLDKLTQLQSLDLGINQI--SEIKNLNKLTQLQSLDLRNNQISEINNLITLIQLR 498

Query: 242 ---------GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
                      ++ L  L+ L+SL+ D+ QI +  ++ L  LT L  LD+   +I++   
Sbjct: 499 SLSLWGNQISEIKNLDKLAQLQSLDFDSNQIRE--ISNLDKLTQLQSLDIRRNQISE--- 553

Query: 293 AYLRNFKNLRSL-EICGGGLTDAGVKHIKDLSSLTLLN-LSQNCNLTDKTLELISGLTGL 350
                 KNL  L ++    + D  +  IK+L  LT L  LS + N  +K   L   LT L
Sbjct: 554 -----IKNLDKLTQLQSLFIMDNQISEIKNLDKLTQLQSLSLDSNQINKINNL-DKLTQL 607

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
             L + N++I+   + +L  L  L+SL +E+ +++
Sbjct: 608 RLLYLGNNQISE--INNLDKLTQLQSLYIENNQIS 640



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 171/339 (50%), Gaps = 61/339 (17%)

Query: 76  MKPLSGLTNLKSLQI----SCSKVTD---------------------SGIAYLKGLQKLT 110
           +K L G+T++KSL+I    +   ++D                      G+  LK L++L 
Sbjct: 288 LKHLGGVTHVKSLKILTLGNLKHLSDYIFQRSFGFNYKHPQNVFSDLDGLDNLKNLKRLY 347

Query: 111 L--LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L  L+L+  P       SL     L +L+L+  Q+S+   +   K+  L+ L+LG N+I+
Sbjct: 348 LDCLDLKEIP-------SLVTFKQLAHLDLSNNQISE--IKNLDKLTQLQSLDLGNNQIS 398

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           +  + +   LT L+SL+L    I +  + NL  L  L+ L+L   Q+  S +++L  LT 
Sbjct: 399 E--IKNFDKLTQLQSLDLGINQISE--IKNLDKLTQLQSLDLGSNQI--SEIKNLDKLTQ 452

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           L+S++L    IS+  ++ L  L+ L+SL+L   QI++  +  L +L  L  L L+G +I+
Sbjct: 453 LQSLDLGINQISE--IKNLNKLTQLQSLDLRNNQISE--INNLITLIQLRSLSLWGNQIS 508

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG-- 346
           +     ++N   L  L+       D     I+++S+L  L   Q+ ++    +  I    
Sbjct: 509 E-----IKNLDKLAQLQSL-----DFDSNQIREISNLDKLTQLQSLDIRRNQISEIKNLD 558

Query: 347 -LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
            LT L SL + +++I+   +++L  L  L+SL+L+S ++
Sbjct: 559 KLTQLQSLFIMDNQISE--IKNLDKLTQLQSLSLDSNQI 595


>gi|312385235|gb|EFR29787.1| hypothetical protein AND_01026 [Anopheles darlingi]
          Length = 627

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 38/333 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGG-LVNLKGLMKLESL 63
           GL  L ++   RNN IT   M+ F G  NL++LDL R    R+  G   +LK L  L  +
Sbjct: 130 GLVRLKTIDLSRNN-ITQLSMENFRGQDNLLELDLSRNRLERVASGTFAHLKELKTLHMI 188

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           +    + I + + +    L  LK L +S + + D      K +Q L    + GC ++   
Sbjct: 189 D----SSINELNTRLFLHLAKLKYLDLSMNSIEDLAPEVFKDVQDLKTFKVRGCRLSNVN 244

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTN 180
               + L  L  L+L + Q      E+F  +  L+ L L  N+   I DE  +H KGLT 
Sbjct: 245 PQIYNILSHLTELDLGQNQFKFLDKEEFKDLRHLRKLRLDGNQLSVIVDELFLHQKGLTF 304

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L+        I D    NL    NL  L++S  ++       L  L NL+++N+S     
Sbjct: 305 LDISRNRLAKIADRAFENLV---NLTFLDVSYNKLSHIEPVCLRPLRNLQTLNIS----- 356

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
            G+L     L+ ++      + I+   +A L SL     L+LF              FK 
Sbjct: 357 -GNL--ALDLTEMEDTIQTVKDISSLVIADLGSLP----LNLFTP------------FKR 397

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           L +L + G  + +  ++ I+ L+ L  L+LS+N
Sbjct: 398 LTALNLSGNHIDNITIQIIEPLAQLEFLDLSRN 430



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 137/330 (41%), Gaps = 41/330 (12%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
             NL+ L++  S V   G     GL +L  ++L    +T   +++     +L  L+L+R 
Sbjct: 107 FKNLEILRVVESNVPSIGDRSFWGLVRLKTIDLSRNNITQLSMENFRGQDNLLELDLSRN 166

Query: 142 QLSDDGCEKFSKIGSLKVLNL---GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           +L       F+ +  LK L++     NE+     +HL     L+ L+L    I D     
Sbjct: 167 RLERVASGTFAHLKELKTLHMIDSSINELNTRLFLHL---AKLKYLDLSMNSIEDLAPEV 223

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
              + +LK  ++   ++ +   +  + L++L  ++L           +   L  L+ L L
Sbjct: 224 FKDVQDLKTFKVRGCRLSNVNPQIYNILSHLTELDLGQNQFKFLDKEEFKDLRHLRKLRL 283

Query: 259 DARQITDTGLAALTSLTGLTHLDLFG---ARITDSG-----------AAY---------- 294
           D  Q++           GLT LD+     A+I D              +Y          
Sbjct: 284 DGNQLSVIVDELFLHQKGLTFLDISRNRLAKIADRAFENLVNLTFLDVSYNKLSHIEPVC 343

Query: 295 LRNFKNLRSLEICGG---GLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 349
           LR  +NL++L I G     LT+    ++ +KD+SSL +       +L    L L +    
Sbjct: 344 LRPLRNLQTLNISGNLALDLTEMEDTIQTVKDISSLVI------ADLGSLPLNLFTPFKR 397

Query: 350 LVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           L +LN+S + I +  ++ ++PL  L  L L
Sbjct: 398 LTALNLSGNHIDNITIQIIEPLAQLEFLDL 427


>gi|425701584|gb|AFX92746.1| putative F-box/LRR-repeat protein [Megavirus courdo11]
          Length = 559

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 198/462 (42%), Gaps = 118/462 (25%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 68
            N+ S++  R N IT + ++   G+    K++L  C  I G     K L   E++N+  C
Sbjct: 65  QNIKSINLSRTN-ITDKELQFLCGI---TKINLSCCKNITGS--GFKYLQLAENINLSGC 118

Query: 69  NCITDSDMKPLSGL-----------------------------------TNLKSLQISCS 93
           N I  S+++ LS +                                   T +K + +S +
Sbjct: 119 NQIIGSELRYLSNIVKINLSRTNIDDQAIEYLIFGQKIDGNKEILIQPQTKIKFIDLSFT 178

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF-------------YLN-- 137
           K+T+  I+YL  ++   ++N+  C  VT++CL  L  +  ++             YLN  
Sbjct: 179 KITNCSISYLSNVK---IININSCEFVTSSCLQYLHNITHIYMNTYNVIIGDNIKYLNKI 235

Query: 138 ----LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL---ESLNLDSCG 190
               LN   LSD+  E    I  L++ N   ++IT + L  LK L  L    S N+D+  
Sbjct: 236 KLLVLNDHTLSDNQLEYIQNIEHLEIYNTS-DKITHQGLQKLKNLKILSLRHSYNIDTIS 294

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG 249
                 + +  L N  C +++D+         L  L +LE+INLS+   I+D  L+ L  
Sbjct: 295 FIPTNKIRILDLKN--CHQVTDSS--------LQYLPHLETINLSWCYKITDNGLKNLQH 344

Query: 250 LSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN-------- 300
           ++   ++NL    +ITD GL  L+    +     +  +ITD G  +LRN KN        
Sbjct: 345 VT---NINLSGCHRITDNGLVYLSKADSIN--ISYCIKITDDGLKHLRNVKNIKLGYHST 399

Query: 301 ------------------LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
                             ++ ++     +TD G+ ++ +  SL+LL      N+TD  L+
Sbjct: 400 SDIYMIEYFEYDFSKEKYIKEIKNTKQLITDIGLSYLINTQSLSLLYCE---NITDDGLQ 456

Query: 343 LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
            +S +    S++++N  +I   GL++L   + +    +  CK
Sbjct: 457 YLSKIK---SISINNCPKIIGTGLKYLSDCQKINLSNVRLCK 495



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 141/294 (47%), Gaps = 37/294 (12%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L  L NL  LS R +  I      +F     +  LDL+ C ++     +L+ L  LE+
Sbjct: 271 QGLQKLKNLKILSLRHSYNIDTI---SFIPTNKIRILDLKNCHQVTDS--SLQYLPHLET 325

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 120
           +N+ WC  ITD+ +K L  +TN   + +S C ++TD+G+ Y   L K   +N+  C  +T
Sbjct: 326 INLSWCYKITDNGLKNLQHVTN---INLSGCHRITDNGLVY---LSKADSINISYCIKIT 379

Query: 121 AACLDSLSALGS--LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
              L  L  + +  L Y + +   + +     FSK   +K +      ITD   + L  L
Sbjct: 380 DDGLKHLRNVKNIKLGYHSTSDIYMIEYFEYDFSKEKYIKEIKNTKQLITD---IGLSYL 436

Query: 179 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 236
            N +SL+L  C  I D+GL  L+    +K + +++  ++  +GL++LS   + + INLS 
Sbjct: 437 INTQSLSLLYCENITDDGLQYLSK---IKSISINNCPKIIGTGLKYLS---DCQKINLSN 490

Query: 237 TGISDGSLRKLAGLSSLKSLN----------LDARQITDTGLAALTSLTGLTHL 280
             +   SL+ L+  S +K  N            A++I  +G   +T   GL HL
Sbjct: 491 VRLCKSSLKYLSLFSKIKINNNFTDDDLKYLSRAKKIKLSGFNKITK-NGLKHL 543


>gi|167861956|gb|ACA05677.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 161/346 (46%), Gaps = 51/346 (14%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAAC 123
               N +TD  +KPL+ LT L+ L IS +KV+D S +A L  L+ L   N +   +T   
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISVLARLPTLESLIATNNQISDITP-- 246

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
              L  L +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  
Sbjct: 247 ---LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTE 299

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-- 241
           L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD  
Sbjct: 300 LKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDIS 355

Query: 242 --GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
              SL K                LA L+++  L+    QI+D  L  L +LT +T L L 
Sbjct: 356 PVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLN 413

Query: 284 GARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
               T++   Y  N       KN+    I    ++D G     D++
Sbjct: 414 DQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 185/395 (46%), Gaps = 81/395 (20%)

Query: 20  NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-C 70
           +A  A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  
Sbjct: 50  DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQ 109

Query: 71  ITD--------------------SDMKPLSGLTNLKSLQISCSKVTD------------- 97
           +TD                    +D+ PL+ LTNL  L +  +++TD             
Sbjct: 110 LTDITPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 169

Query: 98  -------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 150
                  S I+ L GL  L  L+  G  VT   L  L+ L +L  L+++  ++SD     
Sbjct: 170 ELSSNTISDISALSGLTNLQQLSF-GNQVT--DLKPLANLTTLERLDISSNKVSD--ISV 224

Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
            +++ +L+ L    N+I+D  +  L  LTNL+ L+L+   + D G   L  L NL  L+L
Sbjct: 225 LARLPTLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDL 280

Query: 211 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 270
           ++ Q+  S L  LSGLT L  + L    IS+  +  LAGL++L +L L+  Q+ D  ++ 
Sbjct: 281 ANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISP 334

Query: 271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
           +++L  LT+L L+   I+D   + + +   L+ L      ++D  V  + +L+++  L+ 
Sbjct: 335 ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSA 390

Query: 331 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
             N          IS LT L +L    +RIT  GL
Sbjct: 391 GHNQ---------ISDLTPLANL----TRITQLGL 412


>gi|371944024|gb|AEX61852.1| putative F-box_LRR-repeat protein [Megavirus courdo7]
          Length = 559

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 198/462 (42%), Gaps = 118/462 (25%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 68
            N+ S++  R N IT + ++   G+    K++L  C  I G     K L   E++N+  C
Sbjct: 65  QNIKSINLSRTN-ITDKELQFLRGI---TKINLSCCKNITGS--GFKYLQLAENINLSGC 118

Query: 69  NCITDSDMKPLSGL-----------------------------------TNLKSLQISCS 93
           N I  S+++ LS +                                   T +K + +S +
Sbjct: 119 NQIIGSELRYLSNIVKINLSRTNIDDQAIEYLIFGQKIDGNKEILIQPQTKIKFIDLSFT 178

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF-------------YLN-- 137
           K+T+  I+YL  ++   ++N+  C  VT++CL  L  +  ++             YLN  
Sbjct: 179 KITNCSISYLSNVK---IININSCEFVTSSCLQYLHNITHIYMNTYNVIIGDNIKYLNKI 235

Query: 138 ----LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL---ESLNLDSCG 190
               LN   LSD+  E    I  L++ N   ++IT + L  LK L  L    S N+D+  
Sbjct: 236 KLLVLNDHTLSDNQLEYIQNIEHLEIYNTS-DKITHQGLQKLKNLKILSLRHSYNIDTIS 294

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG 249
                 + +  L N  C +++D+         L  L +LE+INLS+   I+D  L+ L  
Sbjct: 295 FIPTNKIRILDLKN--CHQVTDSS--------LQYLPHLETINLSWCYKITDNGLKNLQH 344

Query: 250 LSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN-------- 300
           ++   ++NL    +ITD GL  L+    +     +  +ITD G  +LRN KN        
Sbjct: 345 VT---NINLSGCHRITDNGLVYLSKADSIN--ISYCIKITDDGLKHLRNVKNIKLGYHST 399

Query: 301 ------------------LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
                             ++ ++     +TD G+ ++ +  SL+LL      N+TD  L+
Sbjct: 400 SDIYMIEYFEYDFSKEKYIKEIKNTKQLITDIGLSYLINTQSLSLLYCE---NITDDGLQ 456

Query: 343 LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 383
            +S +    S++++N  +I   GL++L   + +    +  CK
Sbjct: 457 YLSKIK---SISINNCPKIIGTGLKYLSDCQKINLSNVRLCK 495



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 139/293 (47%), Gaps = 35/293 (11%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L  L NL  LS R +  I      +F     +  LDL+ C ++     +L+ L  LE+
Sbjct: 271 QGLQKLKNLKILSLRHSYNIDTI---SFIPTNKIRILDLKNCHQVTDS--SLQYLPHLET 325

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTA 121
           +N+ WC  ITD+ +K L  +TN+      C ++TD+G+ Y   L K   +N+  C  +T 
Sbjct: 326 INLSWCYKITDNGLKNLQHVTNINLS--GCHRITDNGLVY---LSKADSINISYCIKITD 380

Query: 122 ACLDSLSALGS--LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
             L  L  + +  L Y + +   + +     FSK   +K +      ITD   + L  L 
Sbjct: 381 DGLKHLRNVKNIKLGYHSTSDIYMIEYFEYDFSKEKYIKEIKNTKQLITD---IGLSYLI 437

Query: 180 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFT 237
           N +SL+L  C  I D+GL  L+    +K + +++  ++  +GL++LS   + + INLS  
Sbjct: 438 NTQSLSLLYCENITDDGLQYLSK---IKSISINNCPKIIGTGLKYLS---DCQKINLSNV 491

Query: 238 GISDGSLRKLAGLSSLKSLN----------LDARQITDTGLAALTSLTGLTHL 280
            +   SL+ L+  S +K  N            A++I  +G   +T   GL HL
Sbjct: 492 RLCKSSLKYLSLFSKIKINNNFTDDDLKYLSRAKKIKLSGFNKITK-NGLKHL 543


>gi|357615345|gb|EHJ69606.1| hypothetical protein KGM_07261 [Danaus plexippus]
          Length = 438

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 105/187 (56%), Gaps = 8/187 (4%)

Query: 32  GLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 89
           G   L  L L+ C R+    +     GL KL+S+N+ +C  +TD+ ++ L+ L +L+ + 
Sbjct: 246 GTPELEHLGLQDCQRLTDEALKHAATGLPKLKSINLSFCVAVTDAGLRHLARLPHLEDVN 305

Query: 90  I-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDD 146
           + +C  V+D+G+A+L    +L  L++  C        S + LG   L  L+L+ C+L+D+
Sbjct: 306 LRACDGVSDAGVAHLAESGRLRALDVSFCDKVGDEALSHATLGLSGLRCLSLSACRLTDE 365

Query: 147 GCEKFSKIGSLKVLNLG-FNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLC 203
           G E+ +++  L+ LN+G   ++TD  L  L +GL NL++++L  C  I  EGL ++  L 
Sbjct: 366 GLERVARLSQLETLNIGQCTQVTDRGLRALGEGLKNLKAIDLYGCTCITHEGLDHIVKLP 425

Query: 204 NLKCLEL 210
            L  L L
Sbjct: 426 RLSVLNL 432



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 161/318 (50%), Gaps = 26/318 (8%)

Query: 85  LKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSA--LGSLFYLNLNR 140
           ++ LQ+ S  +     +A L GL+ L+L    GC  VT A L S  A  L +L  L+L+ 
Sbjct: 118 VRRLQVLSLRRGLRDAVAALPGLESLSL---SGCYSVTDAALASAFATELPALKRLDLSL 174

Query: 141 C-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEG 195
           C Q++D    + ++ + +L+ L LG    +TD  L+ +  GL  L  LNL SC  + D+G
Sbjct: 175 CKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLRSCWHVNDDG 234

Query: 196 LVNL------TGLCNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRK 246
           + +L       G   L+ L L D Q +    L+H + GL  L+SINLSF   ++D  LR 
Sbjct: 235 IAHLCGGGEARGTPELEHLGLQDCQRLTDEALKHAATGLPKLKSINLSFCVAVTDAGLRH 294

Query: 247 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR-NFKNLRS 303
           LA L  L+ +NL A   ++D G+A L     L  LD+ F  ++ D   ++       LR 
Sbjct: 295 LARLPHLEDVNLRACDGVSDAGVAHLAESGRLRALDVSFCDKVGDEALSHATLGLSGLRC 354

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSR-IT 361
           L +    LTD G++ +  LS L  LN+ Q   +TD+ L  +  GL  L ++++     IT
Sbjct: 355 LSLSACRLTDEGLERVARLSQLETLNIGQCTQVTDRGLRALGEGLKNLKAIDLYGCTCIT 414

Query: 362 SAGLRHLKPLKNLRSLTL 379
             GL H+  L  L  L L
Sbjct: 415 HEGLDHIVKLPRLSVLNL 432



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 141/304 (46%), Gaps = 39/304 (12%)

Query: 104 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC--EKFS-KIGSLKVL 160
           +G+++L +L+L          D+++AL  L  L+L+ C    D      F+ ++ +LK L
Sbjct: 116 RGVRRLQVLSLR-----RGLRDAVAALPGLESLSLSGCYSVTDAALASAFATELPALKRL 170

Query: 161 NLGF-NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGL--VNLTGLCNLKCLELSDTQV 215
           +L    ++TD  L  + + L NLE L L  C  + D GL  +        +    S   V
Sbjct: 171 DLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLRSCWHV 230

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLA-ALTS 273
              G+ HL G                G  R   G   L+ L L D +++TD  L  A T 
Sbjct: 231 NDDGIAHLCG---------------GGEAR---GTPELEHLGLQDCQRLTDEALKHAATG 272

Query: 274 LTGLTHLDL-FGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 330
           L  L  ++L F   +TD+G  +L    +L   +L  C G ++DAGV H+ +   L  L++
Sbjct: 273 LPKLKSINLSFCVAVTDAGLRHLARLPHLEDVNLRACDG-VSDAGVAHLAESGRLRALDV 331

Query: 331 SQNCNLTDKTLELIS-GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVTAND 388
           S    + D+ L   + GL+GL  L++S  R+T  GL  +  L  L +L +  C +VT   
Sbjct: 332 SFCDKVGDEALSHATLGLSGLRCLSLSACRLTDEGLERVARLSQLETLNIGQCTQVTDRG 391

Query: 389 IKRL 392
           ++ L
Sbjct: 392 LRAL 395



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 5/167 (2%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLN 64
           +GL  L S++     A+T  G++  A L +L  ++L  C  +   G+ +L    +L +L+
Sbjct: 271 TGLPKLKSINLSFCVAVTDAGLRHLARLPHLEDVNLRACDGVSDAGVAHLAESGRLRALD 330

Query: 65  IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAA 122
           + +C+ + D  +   + GL+ L+ L +S  ++TD G+  +  L +L  LN+  C  VT  
Sbjct: 331 VSFCDKVGDEALSHATLGLSGLRCLSLSACRLTDEGLERVARLSQLETLNIGQCTQVTDR 390

Query: 123 CLDSL-SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEI 167
            L +L   L +L  ++L  C  ++ +G +   K+  L VLNLG   +
Sbjct: 391 GLRALGEGLKNLKAIDLYGCTCITHEGLDHIVKLPRLSVLNLGLWHV 437


>gi|887862|gb|AAA69530.1| internalin, partial [Listeria monocytogenes]
          Length = 344

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 145/284 (51%), Gaps = 34/284 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 64  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 118

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 119 L--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 167

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 168 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLPGLTKL 223

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 224 TELKLGANQISN--IXPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 279

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
             +  ++ L+ L+ L     +++D     ++SL  LT+++   A
Sbjct: 280 --ISPVSSLTKLQRLFFYNNKVSD-----VSSLANLTNINWLSA 316



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 155/308 (50%), Gaps = 35/308 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           +D+ PL+ L+NL  L +  +++TD  I  LK L  L  L L     T + + +LS L SL
Sbjct: 59  ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSN--TISDISALSGLTSL 114

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             L+L   Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I D
Sbjct: 115 QQLSLGN-QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD 169

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
             +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L GL+ L
Sbjct: 170 --ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLPGLTKL 223

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
             L L A QI++  +  L  LT LT+L+L   ++ D   + + N KNL  L +    ++D
Sbjct: 224 TELKLGANQISN--IXPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD 279

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLKP 370
                I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L P
Sbjct: 280 -----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNINW-----LSAGHNQISDLTP 326

Query: 371 LKNLRSLT 378
           L NL  +T
Sbjct: 327 LANLTRIT 334


>gi|85679240|gb|ABC72036.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 137 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +K++D  +     L KLT  NLE    T   +
Sbjct: 192 F--GNQVTD--LKPLANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQI 240

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 241 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 296

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 297 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 352

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 353 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 410

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 411 LNDQAWTNPPVNYKTNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 53  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 112

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN 
Sbjct: 113 TPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNR 167

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 168 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKLSDISV- 223

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 224 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLD 278

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 279 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 332

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 333 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 384

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 385 N-----WLSAGHNQISDLTPLANLTRIT 407


>gi|290995979|ref|XP_002680560.1| predicted protein [Naegleria gruberi]
 gi|284094181|gb|EFC47816.1| predicted protein [Naegleria gruberi]
          Length = 263

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 76/138 (55%)

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           ++ +  L  L +++ Q+   G++++S +  L S+N+S   I D   + ++ +  L SLN+
Sbjct: 126 ISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNI 185

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
              +I++ G+  L+ +  LT L++   RI+D  A Y+   K L SL I    + D GVK+
Sbjct: 186 YDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKY 245

Query: 319 IKDLSSLTLLNLSQNCNL 336
           I ++  LT L++  N N 
Sbjct: 246 ISEMKQLTSLDIGDNPNW 263



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 73/133 (54%), Gaps = 1/133 (0%)

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           ++ +  L SLN+   QI   G+  ++ +  L  L++    I D GA Y+   K L SL I
Sbjct: 126 ISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNI 185

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
               +++ GVK++ ++  LT LN+  N  ++D+  + IS +  L+SLN+  + I   G++
Sbjct: 186 YDNEISNEGVKYLSEMKQLTSLNIGVN-RISDEEAKYISEMKQLISLNIGYNEIGDKGVK 244

Query: 367 HLKPLKNLRSLTL 379
           ++  +K L SL +
Sbjct: 245 YISEMKQLTSLDI 257



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 72/131 (54%)

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
           S++  L  LN+  N+I  E + ++  +  L SLN+    IGD+G   ++ +  L  L + 
Sbjct: 127 SEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNIY 186

Query: 212 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
           D ++ + G+++LS +  L S+N+    ISD   + ++ +  L SLN+   +I D G+  +
Sbjct: 187 DNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYI 246

Query: 272 TSLTGLTHLDL 282
           + +  LT LD+
Sbjct: 247 SEMKQLTSLDI 257



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 1/141 (0%)

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           V ++  + +S +  L S+N++   I    ++ ++ +  L SLN+   +I D G   ++ +
Sbjct: 118 VKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEM 177

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
             LT L+++   I++ G  YL   K L SL I    ++D   K+I ++  L  LN+  N 
Sbjct: 178 KQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYN- 236

Query: 335 NLTDKTLELISGLTGLVSLNV 355
            + DK ++ IS +  L SL++
Sbjct: 237 EIGDKGVKYISEMKQLTSLDI 257



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 68/129 (52%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L SLN+ +  I  EG+  ++ +  L  L +S+ ++G  G +++S +  L S+N+   
Sbjct: 129 MKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNIYDN 188

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            IS+  ++ L+ +  L SLN+   +I+D     ++ +  L  L++    I D G  Y+  
Sbjct: 189 EISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYISE 248

Query: 298 FKNLRSLEI 306
            K L SL+I
Sbjct: 249 MKQLTSLDI 257



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 73/136 (53%)

Query: 77  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           K +S +  L SL I+ +++   G+ Y+  +++L  LN+    +       +S +  L  L
Sbjct: 124 KFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSL 183

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           N+   ++S++G +  S++  L  LN+G N I+DE   ++  +  L SLN+    IGD+G+
Sbjct: 184 NIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGV 243

Query: 197 VNLTGLCNLKCLELSD 212
             ++ +  L  L++ D
Sbjct: 244 KYISEMKQLTSLDIGD 259



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 74/143 (51%)

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 151
            S V  +   ++  +++LT LN+    +    +  +S +  L  LN++  ++ D G +  
Sbjct: 115 ASLVKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYI 174

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
           S++  L  LN+  NEI++E + +L  +  L SLN+    I DE    ++ +  L  L + 
Sbjct: 175 SEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIG 234

Query: 212 DTQVGSSGLRHLSGLTNLESINL 234
             ++G  G++++S +  L S+++
Sbjct: 235 YNEIGDKGVKYISEMKQLTSLDI 257



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
           L  + +  +   ++   K L SL I    +   GVK+I ++  L  LN+S+N  + DK  
Sbjct: 113 LLASLVKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISEN-EIGDKGA 171

Query: 342 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 401
           + IS +  L SLN+ ++ I++ G+++L  +K L SL +   +++  + K +   ++  L+
Sbjct: 172 KYISEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYI--SEMKQLI 229

Query: 402 S 402
           S
Sbjct: 230 S 230



 Score = 45.8 bits (107), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 50/185 (27%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           T+ +S +  LTSL+   NN I  +G+K  + +  L+ L++                    
Sbjct: 123 TKFISEMKQLTSLNIT-NNQICVEGVKYISEMKQLLSLNISE------------------ 163

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
                  N I D   K +S +  L SL I  +++++ G+ YL  +++LT LN        
Sbjct: 164 -------NEIGDKGAKYISEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLN-------- 208

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
                         + +NR  +SD+  +  S++  L  LN+G+NEI D+ + ++  +  L
Sbjct: 209 --------------IGVNR--ISDEEAKYISEMKQLISLNIGYNEIGDKGVKYISEMKQL 252

Query: 182 ESLNL 186
            SL++
Sbjct: 253 TSLDI 257



 Score = 42.0 bits (97), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S +  L SL+   N  I  +G K  + +  L  L++      + G+  L  + +L SLN
Sbjct: 150 ISEMKQLLSLNISEN-EIGDKGAKYISEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLN 208

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           I   N I+D + K +S +  L SL I  +++ D G+ Y+  +++LT L++   P
Sbjct: 209 IG-VNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYISEMKQLTSLDIGDNP 261


>gi|290975580|ref|XP_002670520.1| predicted protein [Naegleria gruberi]
 gi|284084080|gb|EFC37776.1| predicted protein [Naegleria gruberi]
          Length = 265

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 108/222 (48%), Gaps = 2/222 (0%)

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLN 185
           +  L +L  L +    L  +G +  S++  L +L++  N I DE +  + + +  L +L+
Sbjct: 22  IGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHNRIRDEGVKSISEKMDQLTNLD 81

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           +   GI ++GLV L  + NLK L   D Q+ +     +S +  +  +++S+   ++  L+
Sbjct: 82  ISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDISYNLTNNEILK 141

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
            +  +  L  L L    IT   +  ++ L  LT L++    I + G  Y+   K L  L+
Sbjct: 142 SIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGLKQLTELD 201

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           I   G+   GV  I  ++ LT L++  N  + ++ L ++ G+
Sbjct: 202 ISNNGIGYEGVLSICKMTQLTKLSIYNNP-IPEEALRILDGM 242



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 114/237 (48%), Gaps = 6/237 (2%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM-KLESL 63
           + GL NL +L    N+ +   G K+ + L  L  LD+        G+ ++   M +L +L
Sbjct: 22  IGGLKNLITLQIYENH-LGPNGAKSISELKQLTILDISHNRIRDEGVKSISEKMDQLTNL 80

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           +I +   I++  + PL  + NLK L     +++      +  ++++T L++         
Sbjct: 81  DISFVG-ISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDISYNLTNNEI 139

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L S+  +  L  L L +  ++    E  S++  L VLN+  NEI +E +V++ GL  L  
Sbjct: 140 LKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGLKQLTE 199

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L++ + GIG EG++++  +  L  L + +  +    LR L G+     +    TGIS
Sbjct: 200 LDISNNGIGYEGVLSICKMTQLTKLSIYNNPIPEEALRILDGMKQFRQL---VTGIS 253



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 102/203 (50%), Gaps = 2/203 (0%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           +  L +L++ S  IGD G + + GL NL  L++ +  +G +G + +S L  L  +++S  
Sbjct: 1   MKQLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHN 60

Query: 238 GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
            I D  ++ ++  +  L +L++    I++ GL  L  +  L  L  +  +++   A  + 
Sbjct: 61  RIRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETIS 120

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
             K +  L+I      +  +K I ++  L  L L +N  +T   +E+IS L  L  LN+S
Sbjct: 121 KMKQITELDISYNLTNNEILKSIGEMKQLIKLYLVKN-GITSHQVEIISQLKQLTVLNIS 179

Query: 357 NSRITSAGLRHLKPLKNLRSLTL 379
            + I + G+ ++  LK L  L +
Sbjct: 180 ENEIRNEGVVYISGLKQLTELDI 202



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 7/250 (2%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
            L  L++  N I D   + + GL NL +L +    +G  G  +++ L  L  L++S  ++
Sbjct: 3   QLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHNRI 62

Query: 216 GSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
              G++ +S  +  L ++++SF GIS+  L  L  + +LK L     Q++      ++ +
Sbjct: 63  RDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKM 122

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
             +T LD+      +     +   K L  L +   G+T   V+ I  L  LT+LN+S+N 
Sbjct: 123 KQITELDISYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISEN- 181

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
            + ++ +  ISGL  L  L++SN+ I   G+  +  +  L  L+     +  N I     
Sbjct: 182 EIRNEGVVYISGLKQLTELDISNNGIGYEGVLSICKMTQLTKLS-----IYNNPIPEEAL 236

Query: 395 RDLPNLVSFR 404
           R L  +  FR
Sbjct: 237 RILDGMKQFR 246



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 26/257 (10%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQ 107
           GG + + GL  L +L I + N +  +  K +S L  L  L IS +++ D G+  + + + 
Sbjct: 17  GGAMLIGGLKNLITLQI-YENHLGPNGAKSISELKQLTILDISHNRIRDEGVKSISEKMD 75

Query: 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
           +LT L++    ++   L  L  + +L  L    CQLS    E  SK+  +  L++ +N  
Sbjct: 76  QLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDISYNLT 135

Query: 168 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 227
            +E L  +  +  L  L L   GI    +  ++ L  L  L +S+ ++ + G+ ++SGL 
Sbjct: 136 NNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGLK 195

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
            L  +++S  GI                           G+ ++  +T LT L ++   I
Sbjct: 196 QLTELDISNNGIGY------------------------EGVLSICKMTQLTKLSIYNNPI 231

Query: 288 TDSGAAYLRNFKNLRSL 304
            +     L   K  R L
Sbjct: 232 PEEALRILDGMKQFRQL 248


>gi|223698952|gb|ACN19208.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 53  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL- 106

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 107 -FFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 156

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 157 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 212

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 213 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 268

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 269 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 326

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 327 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 156/309 (50%), Gaps = 37/309 (11%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L    ++  + L  L+ L  
Sbjct: 48  ADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTNLQQ 105

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           LF+ N    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I 
Sbjct: 106 LFFGN----QVTD--LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 157

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 252
           D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+ 
Sbjct: 158 D--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 211

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++
Sbjct: 212 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 267

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLK 369
           D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L 
Sbjct: 268 D-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDLT 314

Query: 370 PLKNLRSLT 378
           PL NL  +T
Sbjct: 315 PLANLTRIT 323


>gi|407424780|gb|EKF39143.1| hypothetical protein MOQ_000636 [Trypanosoma cruzi marinkellei]
          Length = 936

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 181/414 (43%), Gaps = 36/414 (8%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           M  ++S L  L+ LS      I  +G++    L  L +LDL   +     L  L+   +L
Sbjct: 390 MHRDVSRLKKLSRLSLEGCRKI--EGLQWLRALTQLRELDLGYSSVTDDSLTALRFCPEL 447

Query: 61  ESLNIKWCNCITDSDMKPLSGL--TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
             L+++WC  IT   +K L G    +L+ L ++ + VTD G+  LK    L  ++LEGC 
Sbjct: 448 VRLDLQWCGRIT--SLKCLVGALCDSLRELNLTETSVTDEGLVPLKDFAALEWISLEGCG 505

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKG 177
             +  ++ L  L  L  +++ R ++++ G    S+  +L+ + +     +TD     L  
Sbjct: 506 AVSD-VNVLCNLTRLREVDVGRTRVTNGGVLSLSQCQALRAMRMRQCYRLTDASF--LGA 562

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           L  LE ++L  C + +EG+  L G  +L+ L+L       S +  L GL +L  ++L  T
Sbjct: 563 LQQLEEVDLSDCPVTNEGIAALCGARSLRKLQLQSCH-AVSDVNFLGGLEHLMLLDLHHT 621

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
            + +     LA    L +L + +  +       A   L  L  LDL   ++T    ++LR
Sbjct: 622 TVDEAGSVGLAQCPQLTTLIMHSVLVHSLQHWNAALFLPRLKRLDLSTTKVTSDALSFLR 681

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS---------QNCNLTDKTLELIS-- 345
               L +L +        G K+I  L  L +   S          +    D  +++I+  
Sbjct: 682 MCPILETLSL-------RGCKNITHLDFLIIQTSSGVGVCGIAPHDAEPHDTLVDIIAGK 734

Query: 346 ------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
                 G + + ++ +++  I S     +     LR LTL    VT + ++ LQ
Sbjct: 735 EKNPDDGPSPIENMTINDGAIKSTAAAPVVGRHRLRELTLSDTGVTNDGLRALQ 788



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 154/346 (44%), Gaps = 19/346 (5%)

Query: 44  CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY 102
           CTR     +  + L  L  L++ +     +   + +S L  L  L +  C K+   G+ +
Sbjct: 363 CTR----FLRHRSLCALRDLDLSYTQVTEEGMHRDVSRLKKLSRLSLEGCRKI--EGLQW 416

Query: 103 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLN 161
           L+ L +L  L+L    VT   L +L     L  L+L  C +++   C   +   SL+ LN
Sbjct: 417 LRALTQLRELDLGYSSVTDDSLTALRFCPELVRLDLQWCGRITSLKCLVGALCDSLRELN 476

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQVGSS 218
           L    +TDE LV LK    LE ++L+ CG     + ++  LCNL  L   D   T+V + 
Sbjct: 477 LTETSVTDEGLVPLKDFAALEWISLEGCG----AVSDVNVLCNLTRLREVDVGRTRVTNG 532

Query: 219 GLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
           G+  LS    L ++ +     ++D S   L  L  L+ ++L    +T+ G+AAL     L
Sbjct: 533 GVLSLSQCQALRAMRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAALCGARSL 590

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
             L L       S   +L   ++L  L++    + +AG   +     LT L +      +
Sbjct: 591 RKLQLQSCHAV-SDVNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTLIMHSVLVHS 649

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
            +       L  L  L++S +++TS  L  L+    L +L+L  CK
Sbjct: 650 LQHWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSLRGCK 695



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 118/273 (43%), Gaps = 24/273 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L G  +L  L  +  +A++   +    GL +L+ LDL   T    G V L    +L +L 
Sbjct: 584 LCGARSLRKLQLQSCHAVS--DVNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTLI 641

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +      +         L  LK L +S +KVT   +++L+    L  L+L GC       
Sbjct: 642 MHSVLVHSLQHWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSLRGC------- 694

Query: 125 DSLSALGSLFYLN---LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
            +++ L  L       +  C ++    E      +L  +  G  +  D+      G + +
Sbjct: 695 KNITHLDFLIIQTSSGVGVCGIAPHDAEPHD---TLVDIIAGKEKNPDD------GPSPI 745

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGIS 240
           E++ ++   I       + G   L+ L LSDT V + GLR L     LE + L+    ++
Sbjct: 746 ENMTINDGAIKSTAAAPVVGRHRLRELTLSDTGVTNDGLRALQYCPGLERLRLAHCKNVT 805

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
           + ++  L  LS LK L+L A  +T +GLA L+ 
Sbjct: 806 EVAV--LRWLSQLKELDLSATGVTGSGLANLSP 836


>gi|431892162|gb|ELK02609.1| F-box/LRR-repeat protein 14 [Pteropus alecto]
          Length = 412

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 161/332 (48%), Gaps = 73/332 (21%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
           + G+ N++SL +S C  +TD+G+  A+++ +  L  LNL  C                  
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCK----------------- 128

Query: 136 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 191
                 Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 129 ------QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHL 182

Query: 192 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 240
            D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGIS 242

Query: 241 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           D  L  L+ + SL+SLNL +   I+DTG+  L                            
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLA--------------------------- 275

Query: 300 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 357
            + SL + G  ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++  
Sbjct: 276 -MGSLRLSGLDVSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 334

Query: 358 -SRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
            +RIT  GL  +  L  L+ L L   ++T ++
Sbjct: 335 CTRITKRGLERITQLPCLKVLNLGLWQMTDSE 366



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 154/333 (46%), Gaps = 61/333 (18%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLESL 63
           G+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +L
Sbjct: 69  GIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEISSLRAL 122

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGCP 118
           N+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C 
Sbjct: 123 NLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCR 180

Query: 119 VTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NE 166
             +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F   
Sbjct: 181 HLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG 240

Query: 167 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLS 224
           I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++SD            
Sbjct: 241 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSD------------ 288

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDL 282
                           DG  R +  +  L++LN+    +ITD GL  +   L+ LT +DL
Sbjct: 289 ----------------DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDL 332

Query: 283 FG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
           +G  RIT  G   +     L+ L +    +TD+
Sbjct: 333 YGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 365


>gi|124009437|ref|ZP_01694114.1| leucine-rich-repeat protein [Microscilla marina ATCC 23134]
 gi|123984985|gb|EAY24943.1| leucine-rich-repeat protein [Microscilla marina ATCC 23134]
          Length = 966

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 110/227 (48%), Gaps = 38/227 (16%)

Query: 190 GIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           G GD    E L  L GL  L+ L LS   +  S ++ L+    +E +NLS   I+D  L 
Sbjct: 92  GYGDLWGIEDLQPLVGLTQLQTLNLSSNHI--SDIKVLANFPTMEKLNLSQNTIAD--LS 147

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
            LAGL SLK+LNL+  Q  D G   L SL  LT L L   +++D  A  L+  KNLRSL 
Sbjct: 148 PLAGLESLKTLNLNWNQTLDLG--TLPSLPNLTTLYLNSCQLSDIQA--LKQHKNLRSLY 203

Query: 306 ICGGGLTDAGV--------------KHIKDLSSL----TLLNLSQNCNLTDKTLELISGL 347
           +    L D                  HI+D S L    TL  LS N N   K L  ++GL
Sbjct: 204 LRSNQLADLSPLTNLETLAYLRLDENHIEDFSPLASLQTLEALSLNKNRI-KDLAPLAGL 262

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
             L  L ++ ++I S     LKPL  L+ LT+    +T N I+ +Q+
Sbjct: 263 ITLRKLYLNENKIIS-----LKPLAKLQKLTV--LTLTDNKIQDVQA 302



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 132/283 (46%), Gaps = 54/283 (19%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
            D++PL GLT L++L +S + ++D  +                          L+   ++
Sbjct: 100 EDLQPLVGLTQLQTLNLSSNHISDIKV--------------------------LANFPTM 133

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             LNL++  ++D      + + SLK LNL +N+  D  L  L  L NL +L L+SC + D
Sbjct: 134 EKLNLSQNTIAD--LSPLAGLESLKTLNLNWNQTLD--LGTLPSLPNLTTLYLNSCQLSD 189

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI---NLSFTGISDGSLRKLAGL 250
             +  L    NL+ L L   Q+       LS LTNLE++    L    I D S   LA L
Sbjct: 190 --IQALKQHKNLRSLYLRSNQLAD-----LSPLTNLETLAYLRLDENHIEDFS--PLASL 240

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
            +L++L+L+  +I D  LA L  L  L  L L   +I       L+    L+ L +    
Sbjct: 241 QTLEALSLNKNRIKD--LAPLAGLITLRKLYLNENKIIS-----LKPLAKLQKLTVLT-- 291

Query: 311 LTDAGVKHIKDLSSL---TLLNLSQNCNLTDKTLELISGLTGL 350
           LTD  ++ ++ L SL     L+LSQN  +    L+ ++ LTGL
Sbjct: 292 LTDNKIQDVQALHSLLQLDTLDLSQNQIMDVSPLQSLARLTGL 334



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 123/262 (46%), Gaps = 18/262 (6%)

Query: 72  TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
           T +D+ PL+GL +LK+L ++ ++  D G   L  L  LT L L  C ++   + +L    
Sbjct: 142 TIADLSPLAGLESLKTLNLNWNQTLDLGT--LPSLPNLTTLYLNSCQLSD--IQALKQHK 197

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  L L   QL+D      + + +L  L L  N I D     L  L  LE+L+L+   I
Sbjct: 198 NLRSLYLRSNQLAD--LSPLTNLETLAYLRLDENHIED--FSPLASLQTLEALSLNKNRI 253

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  L  L GL  L+ L L++ ++ S  L+ L+ L  L  + L+   I D  ++ L  L 
Sbjct: 254 KD--LAPLAGLITLRKLYLNENKIIS--LKPLAKLQKLTVLTLTDNKIQD--VQALHSLL 307

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L +L+L   QI D  ++ L SL  LT L L   +I D     L     L+ L +    +
Sbjct: 308 QLDTLDLSQNQIMD--VSPLQSLARLTGLGLGVNQIQD--ICPLAGLIELKILVLANNQI 363

Query: 312 TDAGVKHIKDLSSLTLLNLSQN 333
           T+  V     L  L +L L  N
Sbjct: 364 TELPVHFFDKLHQLLVLELENN 385


>gi|149178243|ref|ZP_01856836.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148842892|gb|EDL57262.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 254

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
             +L   +ITDE L  L GL+ ++SLNL    +   GL  L  L  L  L L  T+V  +
Sbjct: 58  AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT-DTGLAALTSLTGL 277
           GL+HL  L NLE +NL  T I+D  L +L+ L  LK L +   ++T   GLA    +TGL
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 64/120 (53%)

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           + +LS   I+D +L+ LAGLS + SLNL   ++T  GLA L  L  LTHL L   ++ D+
Sbjct: 58  AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
           G  +L+   NL  L + G  +TDAG+  +  L  L  L + Q        L L   +TGL
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 1/130 (0%)

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
              LSD ++    L+ L+GL+ ++S+NL  T ++   L +L  L +L  L+L+  ++ D 
Sbjct: 58  AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSL 325
           GL  L  L  L +L+L+G  ITD+G + L + K L+ L +    +T  AG+   + ++ L
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177

Query: 326 TLLNLSQNCN 335
            ++ L +   
Sbjct: 178 EVIGLPEEPK 187



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           + +L    I DE L  L GL  +  L L  T+V S+GL  L  L  L  ++L  T ++D 
Sbjct: 58  AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L+ L  L +L+ LNL   +ITD GL+ L+SL  L  L ++  ++T      L+    + 
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQE--QIT 175

Query: 303 SLEICG 308
            LE+ G
Sbjct: 176 GLEVIG 181



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 25/150 (16%)

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           +  +S  K+TD  +  L GL K+  LNL G  VT+A L  L  L +L +L+L + +++D 
Sbjct: 58  AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           G                        L HL+ L NLE LNL    I D GL  L+ L  LK
Sbjct: 118 G------------------------LKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLK 153

Query: 207 CLELSDTQVG-SSGLRHLSGLTNLESINLS 235
            L +  T+V   +GL     +T LE I L 
Sbjct: 154 RLYVWQTKVTRPAGLALQEQITGLEVIGLP 183



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 58/98 (59%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           ITD  +K L+GL+ + SL +  ++VT +G+A L+ L+ LT L+LE   V  A L  L  L
Sbjct: 66  ITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQL 125

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
            +L YLNL   +++D G  + S +  LK L +   ++T
Sbjct: 126 PNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVT 163



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 25/131 (19%)

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
           + +L  ++ITD  L  L  L+ +  L+L G  +T +G A L++ K L  L +    + DA
Sbjct: 58  AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
           G+KH++ L +L  LNL                           + IT AGL  L  LK L
Sbjct: 118 GLKHLQQLPNLEYLNLY-------------------------GTEITDAGLSQLSSLKKL 152

Query: 375 RSLTLESCKVT 385
           + L +   KVT
Sbjct: 153 KRLYVWQTKVT 163



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           +  +TD+TL+ ++GL+ + SLN+  + +TSAGL  L+ LK L  L LE  KV    +K L
Sbjct: 63  DQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHL 122

Query: 393 QSRDLPNL 400
           Q   LPNL
Sbjct: 123 QQ--LPNL 128



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+GLS + SL+ R    +T+ G+     L  L  L LE+      GL +L+ L  LE LN
Sbjct: 74  LAGLSKVDSLNLR-GTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQLPNLEYLN 132

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVT-DSGIAYLKGLQKLTLLNL--EGCPVTA 121
           + +   ITD+ +  LS L  LK L +  +KVT  +G+A  + +  L ++ L  E  PV A
Sbjct: 133 L-YGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGLEVIGLPEEPKPVAA 191



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 285 ARITDSGAAYLRNFKNLRSLEIC----GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
           A+I  +G + L   +N   LEI        +TD  +K +  LS +  LNL +   +T   
Sbjct: 36  AKIIAAGGSVLELAQNDDRLEIAFHLSDQKITDETLKTLAGLSKVDSLNL-RGTEVTSAG 94

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           L  +  L  L  L++  +++  AGL+HL+ L NL  L L   ++T
Sbjct: 95  LAQLQHLKALTHLHLEKTKVNDAGLKHLQQLPNLEYLNLYGTEIT 139


>gi|451982090|ref|ZP_21930421.1| exproted hypothetical protein [Nitrospina gracilis 3/211]
 gi|451760644|emb|CCQ91701.1| exproted hypothetical protein [Nitrospina gracilis 3/211]
          Length = 323

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 102/221 (46%), Gaps = 18/221 (8%)

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV-- 159
           YL  LQ L L N    P  AA L S +    L +LNL   Q+   G E  +   +LK   
Sbjct: 94  YLPNLQTLNLFNNRIGPEGAAALASSNKYPHLSHLNLWGNQIGPSGAEALANSDTLKALE 153

Query: 160 -LNLGFNEITDECLVHLKGLTNLES---LNLDSCGIGDEGLVNLTG---LCNLKCLELSD 212
            L+L  N I D  L+ L     LE    L LD  G+GD GL  L     L NL+ L LS 
Sbjct: 154 YLDLSGNGIGDPGLIALARSPVLERIRILRLDKNGVGDRGLAALASSPYLGNLEVLSLSH 213

Query: 213 TQVGSSGLRHLSG---LTNLESINLSFTGISDGSLRKLA---GLSSLKSLNLDARQITDT 266
            ++G  G + L+    +  L  + L    I D  ++ LA      +L+ L+L    IT+T
Sbjct: 214 NEIGQEGAKVLAESPYIRKLRQLRLERNRIGDVGVKHLAESEAFQNLEELDLQWNGITET 273

Query: 267 G---LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           G   LA    LT L  L L+G  I ++G   ++   NL+++
Sbjct: 274 GAHDLAGSPVLTRLNRLYLWGNEIGNAGVRAIKKSDNLKNV 314



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 130/286 (45%), Gaps = 29/286 (10%)

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS------KIGSLKVLNLGFNEITDECL 172
           + A  L  L   G+   LN +   L DDG  + +      K+ +L + + GF     + L
Sbjct: 31  INAIILKELKQNGTHLKLNFS-GMLGDDGVRQLARSRLLKKVETLDLNSHGFGNAGAQGL 89

Query: 173 VHLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSG---L 226
              K L NL++LNL +  IG EG   L       +L  L L   Q+G SG   L+    L
Sbjct: 90  ADSKYLPNLQTLNLFNNRIGPEGAAALASSNKYPHLSHLNLWGNQIGPSGAEALANSDTL 149

Query: 227 TNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDARQITDTGLAALTS---LTGLTHL 280
             LE ++LS  GI D  L  LA    L  ++ L LD   + D GLAAL S   L  L  L
Sbjct: 150 KALEYLDLSGNGIGDPGLIALARSPVLERIRILRLDKNGVGDRGLAALASSPYLGNLEVL 209

Query: 281 DLFGARITDSGAAYLRN---FKNLRSLEICGGGLTDAGVKHIKD---LSSLTLLNLSQNC 334
            L    I   GA  L      + LR L +    + D GVKH+ +     +L  L+L  N 
Sbjct: 210 SLSHNEIGQEGAKVLAESPYIRKLRQLRLERNRIGDVGVKHLAESEAFQNLEELDLQWNG 269

Query: 335 NLTDKTLELISG---LTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
            +T+     ++G   LT L  L +  + I +AG+R +K   NL+++
Sbjct: 270 -ITETGAHDLAGSPVLTRLNRLYLWGNEIGNAGVRAIKKSDNLKNV 314



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 23/208 (11%)

Query: 215 VGSSGLRHLSG---LTNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDARQITDTGL 268
           +G  G+R L+    L  +E+++L+  G  +   + LA    L +L++LNL   +I   G 
Sbjct: 54  LGDDGVRQLARSRLLKKVETLDLNSHGFGNAGAQGLADSKYLPNLQTLNLFNNRIGPEGA 113

Query: 269 AALTS---LTGLTHLDLFGARITDSGAAYLRNFKNLRSLE---ICGGGLTDAGVKHIKD- 321
           AAL S      L+HL+L+G +I  SGA  L N   L++LE   + G G+ D G+  +   
Sbjct: 114 AALASSNKYPHLSHLNLWGNQIGPSGAEALANSDTLKALEYLDLSGNGIGDPGLIALARS 173

Query: 322 --LSSLTLLNLSQNCNLTDKTLELISG---LTGLVSLNVSNSRITSAGLRHLKP---LKN 373
             L  + +L L +N  + D+ L  ++    L  L  L++S++ I   G + L     ++ 
Sbjct: 174 PVLERIRILRLDKNG-VGDRGLAALASSPYLGNLEVLSLSHNEIGQEGAKVLAESPYIRK 232

Query: 374 LRSLTLESCKVTANDIKRL-QSRDLPNL 400
           LR L LE  ++    +K L +S    NL
Sbjct: 233 LRQLRLERNRIGDVGVKHLAESEAFQNL 260


>gi|452824610|gb|EME31612.1| F-box and leucine-rich repeat protein GRR1 [Galdieria sulphuraria]
          Length = 740

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 159/335 (47%), Gaps = 41/335 (12%)

Query: 39  LDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 96
           LDL  C+++   G+  L     LE+L +  C+ + +  +  +  +  LKSL I+ C K++
Sbjct: 125 LDLSGCSQLSNVGMEALSYFRSLETLVLDHCSSLGNISLSYIRDIPCLKSLSIACCDKIS 184

Query: 97  DSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 155
            SG+  L  L++L  LNL  C  +T+  L  + +L +L +L L  C              
Sbjct: 185 GSGLEQLFYLKRLEFLNLSSCSRITSDALLHIGSLKNLKHLKLRNCA------------- 231

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ 214
                      + +  L H+  LT+LE+L L  C  I D GL  L     ++ L LS T 
Sbjct: 232 ----------RVDNRALEHIGNLTSLETLELYECVKIDDNGLKYLQKCSQIRHLCLSGTC 281

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISD-------GSLRKLAGLSSLKSLNLDARQ-ITDT 266
           + + G+  L+ +      NL  T  S+        SLRKL+   ++K L L     + D 
Sbjct: 282 ISADGIASLADIFMPHLENLHLTRCSNLVGSQFSVSLRKLS--KNMKRLQLRYLHCVDDE 339

Query: 267 GLAALT-SLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LS 323
            L A++ S   L  L+L   R +TD G ++L    +L  L++ G  ++D G+  IKD L 
Sbjct: 340 VLQAISDSFPQLESLNLTDCRYVTDRGISWLEKLSSLSMLKLGGTSVSDYGILRIKDLLK 399

Query: 324 SLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN 357
            ++ L++S     ++K T  +++ +  L  L++SN
Sbjct: 400 RISELDISSCILCSEKITSHILNNVEHLKVLDISN 434



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 22/232 (9%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 69
           L SLS    + I+  G++    L  L  L+L  C+RI    L+++  L  L+ L ++ C 
Sbjct: 172 LKSLSIACCDKISGSGLEQLFYLKRLEFLNLSSCSRITSDALLHIGSLKNLKHLKLRNCA 231

Query: 70  CITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
            + +  ++ +  LT+L++L++  C K+ D+G+ YL+   ++  L L G  ++A   D ++
Sbjct: 232 RVDNRALEHIGNLTSLETLELYECVKIDDNGLKYLQKCSQIRHLCLSGTCISA---DGIA 288

Query: 129 ALGSLFY-----LNLNRC------QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 176
           +L  +F      L+L RC      Q S     K SK  ++K L L + + + DE L  + 
Sbjct: 289 SLADIFMPHLENLHLTRCSNLVGSQFS-VSLRKLSK--NMKRLQLRYLHCVDDEVLQAIS 345

Query: 177 -GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
                LESLNL  C  + D G+  L  L +L  L+L  T V   G+  +  L
Sbjct: 346 DSFPQLESLNLTDCRYVTDRGISWLEKLSSLSMLKLGGTSVSDYGILRIKDL 397



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 41/237 (17%)

Query: 181 LESLNLDSC-GIGDEGLVNLTG-----------LCNLKCLELSD-TQVGSSGLRHLSGLT 227
           LE+L L  C  + DEGL  LT             C+LK L+LS  +Q+ + G+  LS   
Sbjct: 86  LEALVLSFCVHLTDEGLYKLTSSQEDLHKDSPLTCSLKLLDLSGCSQLSNVGMEALSYFR 145

Query: 228 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG- 284
           +LE++ L   + + + SL  +  +  LKSL++    +I+ +GL  L  L  L  L+L   
Sbjct: 146 SLETLVLDHCSSLGNISLSYIRDIPCLKSLSIACCDKISGSGLEQLFYLKRLEFLNLSSC 205

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
           +RIT     ++ + KNL+ L++      D   ++HI +L+SL             +TLEL
Sbjct: 206 SRITSDALLHIGSLKNLKHLKLRNCARVDNRALEHIGNLTSL-------------ETLEL 252

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
              +           +I   GL++L+    +R L L    ++A+ I  L    +P+L
Sbjct: 253 YECV-----------KIDDNGLKYLQKCSQIRHLCLSGTCISADGIASLADIFMPHL 298



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 164/384 (42%), Gaps = 46/384 (11%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLE 61
           E L  L  L  L+    + IT+  +     L NL  L L  C R+    L ++  L  LE
Sbjct: 189 EQLFYLKRLEFLNLSSCSRITSDALLHIGSLKNLKHLKLRNCARVDNRALEHIGNLTSLE 248

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA-----YLKGLQKLTLL---N 113
           +L +  C  I D+ +K L   + ++ L +S + ++  GIA     ++  L+ L L    N
Sbjct: 249 TLELYECVKIDDNGLKYLQKCSQIRHLCLSGTCISADGIASLADIFMPHLENLHLTRCSN 308

Query: 114 LEGCPVTAA-----------------CLDS--LSALGSLFY----LNLNRCQ-LSDDGCE 149
           L G   + +                 C+D   L A+   F     LNL  C+ ++D G  
Sbjct: 309 LVGSQFSVSLRKLSKNMKRLQLRYLHCVDDEVLQAISDSFPQLESLNLTDCRYVTDRGIS 368

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVN--LTGLCNLK 206
              K+ SL +L LG   ++D  ++ +K L   +  L++ SC +  E + +  L  + +LK
Sbjct: 369 WLEKLSSLSMLKLGGTSVSDYGILRIKDLLKRISELDISSCILCSEKITSHILNNVEHLK 428

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS------LRKLAGL-SSLKSLNLD 259
            L++S+    +     LS    L+ + L    I +G       L  +A L   L++L L 
Sbjct: 429 VLDISNNPQLTKNSWSLSYQNFLKRLPLKTLVIEEGGTLGKDFLTSVACLFPKLETLLLS 488

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAA-YLRNFKN-LRSLEICG-GGLTDAGV 316
             +I      A T    L HL L    ++      +L + KN L+ L +     +TD   
Sbjct: 489 KCRIDGDDFKAFTDFGCLRHLKLSHCEVSKPFKFDFLISLKNALQHLNLSSCHFVTDDLC 548

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKT 340
             I +L +L  LNL    N+T++ 
Sbjct: 549 TIIGELINLESLNLKNCRNVTNRA 572



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 21/195 (10%)

Query: 211 SDTQVGSSGLRHLSGLTNLESINLSFTG--ISDGSLRKLAGLSSLKSLNLD-ARQITDTG 267
           +D ++    L+ L G T  + +NLS     +SD  +  ++    L++L L     +TD G
Sbjct: 44  TDRKLSFRVLQWLEG-TEFQQLNLSSQAGRVSDDWMSPISTFL-LEALVLSFCVHLTDEG 101

Query: 268 LAALTSLTGLTH-----------LDLFG-ARITDSGAAYLRNFKNLRSL--EICGGGLTD 313
           L  LTS     H           LDL G +++++ G   L  F++L +L  + C   L +
Sbjct: 102 LYKLTSSQEDLHKDSPLTCSLKLLDLSGCSQLSNVGMEALSYFRSLETLVLDHCSS-LGN 160

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLK 372
             + +I+D+  L  L+++    ++   LE +  L  L  LN+S+ SRITS  L H+  LK
Sbjct: 161 ISLSYIRDIPCLKSLSIACCDKISGSGLEQLFYLKRLEFLNLSSCSRITSDALLHIGSLK 220

Query: 373 NLRSLTLESCKVTAN 387
           NL+ L L +C    N
Sbjct: 221 NLKHLKLRNCARVDN 235



 Score = 38.5 bits (88), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 133/274 (48%), Gaps = 26/274 (9%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGC 117
           +LESLN+  C  +TD  +  L  L++L  L++  + V+D GI  +K  L++++ L++  C
Sbjct: 350 QLESLNLTDCRYVTDRGISWLEKLSSLSMLKLGGTSVSDYGILRIKDLLKRISELDISSC 409

Query: 118 PVTAACLDS--LSALGSLFYLNL-NRCQLSDDGC----EKFSKIGSLKVL------NLGF 164
            + +  + S  L+ +  L  L++ N  QL+ +      + F K   LK L       LG 
Sbjct: 410 ILCSEKITSHILNNVEHLKVLDISNNPQLTKNSWSLSYQNFLKRLPLKTLVIEEGGTLGK 469

Query: 165 NEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRH 222
           + +T   CL        LE+L L  C I  +     T    L+ L+LS  +V        
Sbjct: 470 DFLTSVACL-----FPKLETLLLSKCRIDGDDFKAFTDFGCLRHLKLSHCEVSKPFKFDF 524

Query: 223 LSGLTN-LESINLSFTGISDGSLRKLAG-LSSLKSLNL-DARQITDTGLAALTSLTGLTH 279
           L  L N L+ +NLS        L  + G L +L+SLNL + R +T+  L +L SL+ L++
Sbjct: 525 LISLKNALQHLNLSSCHFVTDDLCTIIGELINLESLNLKNCRNVTNRALLSLYSLSHLSY 584

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
           L+L G  ++      L   +NL S+ +    +T+
Sbjct: 585 LNLRGCPLSQEAVWLLE--RNLNSISVLKYDMTN 616


>gi|56797877|emb|CAH04900.1| internalin A [Listeria monocytogenes]
          Length = 792

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 160/348 (45%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+  SNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 130 LANSSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 184

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 185 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 233

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 234 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 289

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 290 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 345

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 346 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 403

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 404 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 451



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 194/414 (46%), Gaps = 69/414 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 46  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 105

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+  +NL  L +  +++TD     +  L+ LT LN 
Sbjct: 106 TPLKDLTKLVDILMNNNQIADITPLANSSNLTGLTLFNNQITD-----IDPLKNLTNLNR 160

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 161 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 216

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 217 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 271

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 272 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 325

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 326 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 377

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 401
           N       SAG   +  L PL NL  +T   L   + T   +    +  +PN V
Sbjct: 378 N-----WLSAGHNQISDLTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTV 426


>gi|22347568|gb|AAM95929.1| internalin A precursor [Listeria monocytogenes]
          Length = 743

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 82  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 136

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +K++D  +     L KLT  NLE    T   +
Sbjct: 137 F--GNQVTD--LKPLANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQI 185

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 186 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 241

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 242 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 297

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 298 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 355

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 356 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 184/385 (47%), Gaps = 66/385 (17%)

Query: 27  MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD---- 73
           MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD    
Sbjct: 1   MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPL 60

Query: 74  ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEG 116
                           +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE 
Sbjct: 61  KDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLEL 115

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
              T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L 
Sbjct: 116 SSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKLSDISV--LA 170

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+ 
Sbjct: 171 KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLAN 226

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + 
Sbjct: 227 NQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPIS 280

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++N  
Sbjct: 281 NLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-- 330

Query: 357 NSRITSAG---LRHLKPLKNLRSLT 378
                SAG   +  L PL NL  +T
Sbjct: 331 ---WLSAGHNQISDLTPLANLTRIT 352


>gi|195585785|ref|XP_002082659.1| GD25110 [Drosophila simulans]
 gi|194194668|gb|EDX08244.1| GD25110 [Drosophila simulans]
          Length = 522

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 19/222 (8%)

Query: 177 GLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-G 225
           GL  L+ LNL SC  I D+G+ +L G           L+ L L D Q +    L H++ G
Sbjct: 295 GLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQG 354

Query: 226 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL 282
           LT+L+SINLSF   ++D  L+ LA +  L+ LNL +   I+D G+A LT   +G+  LD+
Sbjct: 355 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 414

Query: 283 -FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDK 339
            F  +I+D    ++ +    LRSL +    +TD G+  I K L  L  LN+ Q   +TDK
Sbjct: 415 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDK 474

Query: 340 TLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
            L+ L   LT L ++++   ++++S G+  +  L  L+ L L
Sbjct: 475 GLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 516



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 40/245 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVN--LKG 56
           GL  L  L+ R    I+ QG+   AG         + L  L L+ C R+    +    +G
Sbjct: 295 GLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQG 354

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L  L+S+N+ +C  +TDS +K L+ +  L+ L + SC  ++D G+AYL +G   +  L++
Sbjct: 355 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 414

Query: 115 EGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C  ++   L  ++  L  L  L+LN+CQ++D G  K +                    
Sbjct: 415 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIA-------------------- 454

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
              K L  LE+LN+  C  I D+GL  L   L NLK ++L   TQ+ S G+  +  L  L
Sbjct: 455 ---KALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKL 511

Query: 230 ESINL 234
           + +NL
Sbjct: 512 QKLNL 516



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 7/166 (4%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESL 63
            GL++L S++     ++T  G+K  A +  L +L+L  C  I   G+  L +G   + SL
Sbjct: 353 QGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSL 412

Query: 64  NIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VT 120
           ++ +C+ I+D  +  ++ GL  L+SL ++  ++TD G+  + K L +L  LN+  C  +T
Sbjct: 413 DVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRIT 472

Query: 121 AACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 164
              L +L+  L +L  ++L  C QLS  G +   K+  L+ LNLG 
Sbjct: 473 DKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGL 518



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 32/235 (13%)

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE---SIN 233
           G+  L SLNL  C        N+  +       ++DT +G    +HL  L  LE     N
Sbjct: 232 GVPALTSLNLSGC-------FNVADMNLGHAFSITDTSLGRIA-QHLRNLETLELGGCCN 283

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT-----HLDLFG--- 284
           ++ TG+    L    GL  LK LNL +   I+D G+  L   +  T      L+  G   
Sbjct: 284 ITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQD 339

Query: 285 -ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
             R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL    N++D  
Sbjct: 340 CQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIG 398

Query: 341 LE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 392
           +  L  G +G+ SL+VS   +I+   L H+ + L  LRSL+L  C++T + + ++
Sbjct: 399 MAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKI 453


>gi|87307225|ref|ZP_01089370.1| hypothetical protein DSM3645_16920 [Blastopirellula marina DSM
           3645]
 gi|87289965|gb|EAQ81854.1| hypothetical protein DSM3645_16920 [Blastopirellula marina DSM
           3645]
          Length = 378

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 61/113 (53%)

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           + +L    + DE L  L  + N+  + L  T+V  +GL HL+GL  LE +NL+ T ++D 
Sbjct: 252 TYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDS 311

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
            LR LA    L  LNL A +++D G+  L SL  L HL L+  + T   A  L
Sbjct: 312 GLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQL 364



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 58/110 (52%)

Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 269
           LSD  V    L  L  + N+  INL  T ++D  L  LAGL  L+ LNL   ++TD+GL 
Sbjct: 255 LSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDSGLR 314

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
            L +   L++L+L+   ++D+G  +L +  +LR L +     T    K +
Sbjct: 315 YLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQL 364



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 8/121 (6%)

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           +NR   S D          +   +L    + DE L  L+ + N+  +NL    + D GL 
Sbjct: 239 INRVAQSSDA--------KVVTYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLE 290

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
           +L GL  L+ L L+ T+V  SGLR+L+    L  +NL  T +SD  +  L  L SL+ L 
Sbjct: 291 HLAGLKQLERLNLAKTKVTDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLY 350

Query: 258 L 258
           L
Sbjct: 351 L 351



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 1/120 (0%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
            +L+   + D+      KIG++  +NL   E+TD  L HL GL  LE LNL    + D G
Sbjct: 253 YHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDSG 312

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLK 254
           L  L     L  L L  T+V  +G+ HL  L +L  + L  T  +  S ++L A +  LK
Sbjct: 313 LRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSAAIPGLK 372



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 60/120 (50%)

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           + +LS   + D +L  L  + ++  +NL   ++TD GL  L  L  L  L+L   ++TDS
Sbjct: 252 TYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDS 311

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
           G  YL   + L  L +    ++DAG+ H+  L SL  L L Q     +   +L + + GL
Sbjct: 312 GLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSAAIPGL 371



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           + D   A LR   N+  + + G  +TDAG++H+  L  L  LNL++   +TD  L  ++ 
Sbjct: 260 VHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKT-KVTDSGLRYLAA 318

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
              L  LN+  + ++ AG+ HL  L +LR L L   K T    K+L S  +P L
Sbjct: 319 CEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQL-SAAIPGL 371



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 56/105 (53%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           + D  + PL  + N+  + +  ++VTD+G+ +L GL++L  LNL    VT + L  L+A 
Sbjct: 260 VHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDSGLRYLAAC 319

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
             L YLNL   ++SD G +    + SL+ L L   + T E    L
Sbjct: 320 EKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQL 364



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%)

Query: 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
           K+   +L   PV    L  L  +G++  +NL   +++D G E  + +  L+ LNL   ++
Sbjct: 249 KVVTYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKV 308

Query: 168 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           TD  L +L     L  LNL +  + D G+ +L  L +L+ L L  T+      + LS 
Sbjct: 309 TDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSA 366



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 27/130 (20%)

Query: 35  NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 94
           N+V+++L        GL +L GL +LE LN                         ++ +K
Sbjct: 273 NVVEINLMGTEVTDAGLEHLAGLKQLERLN-------------------------LAKTK 307

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-K 153
           VTDSG+ YL   +KL+ LNL    V+ A +D L +L SL +L L + + + +  ++ S  
Sbjct: 308 VTDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSAA 367

Query: 154 IGSLKVLNLG 163
           I  LKV NLG
Sbjct: 368 IPGLKV-NLG 376



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 53/115 (46%)

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           +  +S   V D  +A L+ +  +  +NL G  VT A L+ L+ L  L  LNL + +++D 
Sbjct: 252 TYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDS 311

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
           G    +    L  LNL   E++D  + HL  L +L  L L       E    L+ 
Sbjct: 312 GLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSA 366


>gi|406831706|ref|ZP_11091300.1| peptidase M56 BlaR1 [Schlesneria paludicola DSM 18645]
          Length = 1125

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 171/397 (43%), Gaps = 53/397 (13%)

Query: 7    GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 66
            G   +  LS +R++ I + G+++ A      K  L+      G +      ++ + + ++
Sbjct: 703  GRRKIQVLSLKRSDHIQSVGLRSGAAA---SKHPLDEANTRDGDIAAAIDRLRKQEIFVR 759

Query: 67   ----------WCNCITD-SDMKPLSG---------LTNLKSLQISCSKV--TDSGIAYLK 104
                      W   I D S   P+SG         ++  +SL +    V  T + +A L 
Sbjct: 760  EFNSRNDPRYWIQVIVDLSRTIPISGDEILVDIETISRDRSLDLHLKNVDLTPASVARLG 819

Query: 105  GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
              + ++ L L G  +    L ++S L  +  L L     +DDG ++ +   +L+ +++  
Sbjct: 820  ATKHISTLELSGRSINDELLQAISNL-PIGRLELGSGPYTDDGVKQLANCVALESISIAG 878

Query: 165  NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
              IT++C  HL  L  L  + L S       L  L  + +L+ + +S T+  +  L   S
Sbjct: 879  PSITNDCFTHLVRLPRLRGVGLRSSQFTSGVLATLARIPDLRRMTISTTEQLTFDLGPFS 938

Query: 225  GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
             L +++     FTG + G                      D   A       L    +  
Sbjct: 939  ELRSVD-----FTGATFGD---------------------DLTHALAEKCPRLEEASIRN 972

Query: 285  ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
            + IT++G A L   ++LR L +    + D     I+ + +L  L+L+ NC++ D+TL   
Sbjct: 973  SSITNAGVAALVPLRHLRVLALDRAQIDDRIADSIQKMPNLEWLDLN-NCDIGDRTLAAA 1031

Query: 345  SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
            SG + L  LN+  ++I++ GL  +  LKN+R+L+L S
Sbjct: 1032 SGCSRLSYLNLGQTQISNEGLAVIGKLKNIRNLSLWS 1068



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 114/251 (45%), Gaps = 8/251 (3%)

Query: 72   TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
            TD  +K L+    L+S+ I+   +T+    +L  L +L  + L     T+  L +L+ + 
Sbjct: 858  TDDGVKQLANCVALESISIAGPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVLATLARIP 917

Query: 132  SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
             L  + ++  +        FS++ S+      F +     L   +    LE  ++ +  I
Sbjct: 918  DLRRMTISTTEQLTFDLGPFSELRSVDFTGATFGDDLTHALA--EKCPRLEEASIRNSSI 975

Query: 192  GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
             + G+  L  L +L+ L L   Q+       +  + NLE ++L+   I D +L   +G S
Sbjct: 976  TNAGVAALVPLRHLRVLALDRAQIDDRIADSIQKMPNLEWLDLNNCDIGDRTLAAASGCS 1035

Query: 252  SLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLR-----SLE 305
             L  LNL   QI++ GLA +  L  + +L L+   ++TD   ++L+   + R      L+
Sbjct: 1036 RLSYLNLGQTQISNEGLAVIGKLKNIRNLSLWSNQQLTDECVSHLKQLPDYRMKFVLHLQ 1095

Query: 306  ICGGGLTDAGV 316
            + G  +T  G+
Sbjct: 1096 LDGTQITKNGI 1106



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 83   TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 142
              L+   I  S +T++G+A L  L+ L +L L+   +     DS+  + +L +L+LN C 
Sbjct: 963  PRLEEASIRNSSITNAGVAALVPLRHLRVLALDRAQIDDRIADSIQKMPNLEWLDLNNCD 1022

Query: 143  LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTG 201
            + D      S    L  LNLG  +I++E L  +  L N+ +L+L S   + DE + +L  
Sbjct: 1023 IGDRTLAAASGCSRLSYLNLGQTQISNEGLAVIGKLKNIRNLSLWSNQQLTDECVSHLKQ 1082

Query: 202  LCNLKC-----LELSDTQVGSSGLRHLSG 225
            L + +      L+L  TQ+  +G+  L  
Sbjct: 1083 LPDYRMKFVLHLQLDGTQITKNGILELQA 1111



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 143  LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
            +++ G      +  L+VL L   +I D     ++ + NLE L+L++C IGD  L   +G 
Sbjct: 975  ITNAGVAALVPLRHLRVLALDRAQIDDRIADSIQKMPNLEWLDLNNCDIGDRTLAAASGC 1034

Query: 203  CNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK-----SL 256
              L  L L  TQ+ + GL  +  L N+ +++L S   ++D  +  L  L   +      L
Sbjct: 1035 SRLSYLNLGQTQISNEGLAVIGKLKNIRNLSLWSNQQLTDECVSHLKQLPDYRMKFVLHL 1094

Query: 257  NLDARQITDTGLAALTS 273
             LD  QIT  G+  L +
Sbjct: 1095 QLDGTQITKNGILELQA 1111



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 108/252 (42%), Gaps = 31/252 (12%)

Query: 149  EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
            E  S+  SL  L+L   ++T   +  L    ++ +L L    I DE L  ++ L  +  L
Sbjct: 793  ETISRDRSLD-LHLKNVDLTPASVARLGATKHISTLELSGRSINDELLQAISNL-PIGRL 850

Query: 209  ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
            EL        G++ L+    LESI+++   I++     L  L  L+ + L + Q T   L
Sbjct: 851  ELGSGPYTDDGVKQLANCVALESISIAGPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVL 910

Query: 269  AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
            A L  +  L  + +     T+     L  F  LRS++  G    D       DL+     
Sbjct: 911  ATLARIPDLRRMTI---STTEQLTFDLGPFSELRSVDFTGATFGD-------DLTH---- 956

Query: 329  NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
             L++ C   ++              ++ NS IT+AG+  L PL++LR L L+  ++    
Sbjct: 957  ALAEKCPRLEEA-------------SIRNSSITNAGVAALVPLRHLRVLALDRAQIDDRI 1003

Query: 389  IKRLQSRDLPNL 400
               +Q   +PNL
Sbjct: 1004 ADSIQK--MPNL 1013


>gi|29423725|gb|AAO73556.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 81  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 135

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +K++D  +     L KLT  NLE    T   +
Sbjct: 136 F--GNQVTD--LKPLANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQI 184

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 185 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 240

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 241 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 296

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 297 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 354

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 355 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 402



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 15  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 74

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 75  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 129

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 130 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKLSDISV--LAKLTNLESLIATNNQI 184

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 185 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 238

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 239 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 294

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 295 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 341

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 342 TPLANLTRIT 351


>gi|430744490|ref|YP_007203619.1| hypothetical protein Sinac_3679 [Singulisphaera acidiphila DSM
           18658]
 gi|430016210|gb|AGA27924.1| hypothetical protein Sinac_3679 [Singulisphaera acidiphila DSM
           18658]
          Length = 242

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 26/206 (12%)

Query: 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
           F EI +  LV      N  S    +    D  L+ L  L NLK + L+ +Q    GL+ L
Sbjct: 53  FQEIAEVSLVRDPFAPN--SFQPINNAKADNLLLQLADLTNLKGVLLTGSQATDQGLKCL 110

Query: 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
           S + NLE+I                       + ++A ++TD G+  L  L+ L  L + 
Sbjct: 111 SQMENLENI-----------------------VTVEATEVTDVGVFYLEKLSKLRDLHIS 147

Query: 284 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
            + +TD+  A +     L  + + G  LTDAG+ H+KDL  L +L+L+ +  LTD  LE 
Sbjct: 148 YSNLTDAAIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLA-DTGLTDVGLEE 206

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLK 369
           +  L  L  + V ++++T AG++ LK
Sbjct: 207 LRLLAKLRIVCVGDTKVTEAGVQRLK 232



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 1/158 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT-LLNLEGCPVTAACLDSL 127
           N   D+ +  L+ LTNLK + ++ S+ TD G+  L  ++ L  ++ +E   VT   +  L
Sbjct: 76  NAKADNLLLQLADLTNLKGVLLTGSQATDQGLKCLSQMENLENIVTVEATEVTDVGVFYL 135

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
             L  L  L+++   L+D      +K   L+ + +  N +TD  L HLK L  L+ L+L 
Sbjct: 136 EKLSKLRDLHISYSNLTDAAIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLA 195

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
             G+ D GL  L  L  L+ + + DT+V  +G++ L  
Sbjct: 196 DTGLTDVGLEELRLLAKLRIVCVGDTKVTEAGVQRLKA 233



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 13/172 (7%)

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           G   LR L G          F  I++ SL R     +S + +N +A+   D  L  L  L
Sbjct: 40  GPKWLRKLLG-------EEYFQEIAEVSLVRDPFAPNSFQPIN-NAK--ADNLLLQLADL 89

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSL-EICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           T L  + L G++ TD G   L   +NL ++  +    +TD GV +++ LS L  L++S +
Sbjct: 90  TNLKGVLLTGSQATDQGLKCLSQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYS 149

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
            NLTD  +  I+    L  + V  +R+T AGL HLK L+ L+ L L    +T
Sbjct: 150 -NLTDAAIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLADTGLT 200



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 76/140 (54%), Gaps = 3/140 (2%)

Query: 142 QLSDDGCEKFSKIGSLK-VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
           Q +D G +  S++ +L+ ++ +   E+TD  + +L+ L+ L  L++    + D  + ++ 
Sbjct: 101 QATDQGLKCLSQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYSNLTDAAIASIA 160

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
               L+ + +   ++  +GL HL  L  L+ ++L+ TG++D  L +L  L+ L+ + +  
Sbjct: 161 KHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLADTGLTDVGLEELRLLAKLRIVCVGD 220

Query: 261 RQITDTGLAALTSLTGLTHL 280
            ++T+ G+  L +   + HL
Sbjct: 221 TKVTEAGVQRLKA--AMPHL 238



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 73/159 (45%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           NNA     +   A L NL  + L        GL  L  +  LE++       +TD  +  
Sbjct: 75  NNAKADNLLLQLADLTNLKGVLLTGSQATDQGLKCLSQMENLENIVTVEATEVTDVGVFY 134

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L  L+ L+ L IS S +TD+ IA +    KL  + + G  +T A L  L  L  L  L+L
Sbjct: 135 LEKLSKLRDLHISYSNLTDAAIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDL 194

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 177
               L+D G E+   +  L+++ +G  ++T+  +  LK 
Sbjct: 195 ADTGLTDVGLEELRLLAKLRIVCVGDTKVTEAGVQRLKA 233


>gi|290992631|ref|XP_002678937.1| predicted protein [Naegleria gruberi]
 gi|284092552|gb|EFC46193.1| predicted protein [Naegleria gruberi]
          Length = 215

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 7/198 (3%)

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           L + G E  SK+  L  LN+  N+I      +L+ L  L + N+ +  I  +    L+ L
Sbjct: 2   LGNIGAEHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSEL 61

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
             L+ LE+    + S+G+ +LS +     + ++   I    ++ L  L  L  L++   Q
Sbjct: 62  KQLQTLEIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQ 121

Query: 263 ITDTG-------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           +   G       +  LT +  L +LD+ G  I D GA  L   K L+ L +    +++ G
Sbjct: 122 VFIIGDDINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEG 181

Query: 316 VKHIKDLSSLTLLNLSQN 333
            +HI  L  LT LN++ N
Sbjct: 182 AQHISKLEKLTFLNIANN 199



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 8/196 (4%)

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           +G+ G  +++ L  L  L + + Q+GS+G ++L  L  L + N+    I       L+ L
Sbjct: 2   LGNIGAEHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSEL 61

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE----- 305
             L++L +    I   G+  L+S+   +HL +    I   G  +L N K L  L+     
Sbjct: 62  KQLQTLEIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQ 121

Query: 306 --ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
             I G  +    V+ +  +  L  L++  N  + D+  + +S L  L  LNV  + I+  
Sbjct: 122 VFIIGDDINSEEVEILTGMQQLQYLDIGGNY-IDDEGAKCLSKLKELKHLNVLRNAISEE 180

Query: 364 GLRHLKPLKNLRSLTL 379
           G +H+  L+ L  L +
Sbjct: 181 GAQHISKLEKLTFLNI 196



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 99/203 (48%), Gaps = 9/203 (4%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
            E++S L  LT L+ + NN I + G K    L  L   ++            L  L +L+
Sbjct: 7   AEHISKLKQLTYLNIQ-NNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSELKQLQ 65

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE------ 115
           +L I + N I  + ++ LS +     L ++ +++   G+ +L  L++LT L++       
Sbjct: 66  TLEIGYNN-IESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQVFI 124

Query: 116 -GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
            G  + +  ++ L+ +  L YL++    + D+G +  SK+  LK LN+  N I++E   H
Sbjct: 125 IGDDINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEGAQH 184

Query: 175 LKGLTNLESLNLDSCGIGDEGLV 197
           +  L  L  LN+ +  IG +G+ 
Sbjct: 185 ISKLEKLTFLNIANNDIGYQGIY 207



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 8/211 (3%)

Query: 99  GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
           G  ++  L++LT LN++   + +     L  L  L   N++   +     E  S++  L+
Sbjct: 6   GAEHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSELKQLQ 65

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV--- 215
            L +G+N I    + +L  +     L + +  I  EG+  L  L  L  L++S  QV   
Sbjct: 66  TLEIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQVFII 125

Query: 216 ----GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
                S  +  L+G+  L+ +++    I D   + L+ L  LK LN+    I++ G   +
Sbjct: 126 GDDINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEGAQHI 185

Query: 272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           + L  LT L++    I   G  YL   K L 
Sbjct: 186 SKLEKLTFLNIANNDIGYQG-IYLSKMKQLH 215



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 89/199 (44%), Gaps = 7/199 (3%)

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           + +S L  L YLN+   Q+   G +   ++  L   N+  N+I  +   +L  L  L++L
Sbjct: 8   EHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSELKQLQTL 67

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS----FT--- 237
            +    I   G+  L+ +     L ++  ++ + G++ L  L  L  +++S    F    
Sbjct: 68  EIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQVFIIGD 127

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I+   +  L G+  L+ L++    I D G   L+ L  L HL++    I++ GA ++  
Sbjct: 128 DINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEGAQHISK 187

Query: 298 FKNLRSLEICGGGLTDAGV 316
            + L  L I    +   G+
Sbjct: 188 LEKLTFLNIANNDIGYQGI 206


>gi|219821381|gb|ACL37832.1| internalin A [Listeria monocytogenes]
 gi|219821384|gb|ACL37834.1| internalin A [Listeria monocytogenes]
          Length = 741

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +K++D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD------------------- 73
           + DL++ T +    + +K +  LE LN    I + N  +TD                   
Sbjct: 14  QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQ 73

Query: 74  -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALG 131
            +D+ PL+ L+NL  L +  +++TD     +  L+ LT LN LE    T + + +LS L 
Sbjct: 74  IADITPLANLSNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLT 128

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL  L+    Q++D   +  + + +L+ L++  N+++D  +  L  LTNLESL   +  I
Sbjct: 129 SLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKLSDISV--LAKLTNLESLIATNNQI 183

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L+GL+
Sbjct: 184 SD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 237

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    +
Sbjct: 238 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 293

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHL 368
           +D     I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L
Sbjct: 294 SD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNIN-----WLSAGHNQISDL 340

Query: 369 KPLKNLRSLT 378
            PL NL  +T
Sbjct: 341 TPLANLTRIT 350


>gi|320167410|gb|EFW44309.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 702

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 123/296 (41%), Gaps = 1/296 (0%)

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
           + N IT       + LT L  L +  +++T        GL  LTLL+L   P+T+    +
Sbjct: 67  YTNNITSIPANAFASLTRLTILTLDVNQITSIPATAFTGLSALTLLSLGSNPITSMSASA 126

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
            + L  L  L+L+   ++      F+ + +L  + L   +IT         L +L+ L L
Sbjct: 127 FTDLTKLTQLSLDNTPITSISANAFAGLSALTQMFLYQTQITSISASAFADLRSLQKLYL 186

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
               I        TGL  L  L+LS  Q+ S      + L++L  + L F  +S  +   
Sbjct: 187 YGNRITSISANAFTGLTKLAYLDLSYNQITSISANAFADLSSLTDLRLYFNQMSSLAANT 246

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
             GLS+L  L+L   QIT     A T L  L  L L    IT   A       +L  L++
Sbjct: 247 FTGLSALTQLSLLNNQITAISANAFTGLNALKLLYLHNNLITTIAANSFAGLPSLTVLQV 306

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
               +T         LS+LT+  L+ N  +T       + LT L  L + N+  T+
Sbjct: 307 YNNTITSISANAFTGLSALTMFLLNYN-QITSIPASAFTELTTLQVLALDNNPFTT 361



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 9/187 (4%)

Query: 6   SGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHG-GLVNLKGLMKL 60
           S  ++L SL   +   N IT+    AF GL  L  LDL   + T I      +L  L  L
Sbjct: 173 SAFADLRSLQKLYLYGNRITSISANAFTGLTKLAYLDLSYNQITSISANAFADLSSLTDL 232

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
                 + N ++       +GL+ L  L +  +++T        GL  L LL L    +T
Sbjct: 233 R----LYFNQMSSLAANTFTGLSALTQLSLLNNQITAISANAFTGLNALKLLYLHNNLIT 288

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
               +S + L SL  L +    ++      F+ + +L +  L +N+IT         LT 
Sbjct: 289 TIAANSFAGLPSLTVLQVYNNTITSISANAFTGLSALTMFLLNYNQITSIPASAFTELTT 348

Query: 181 LESLNLD 187
           L+ L LD
Sbjct: 349 LQVLALD 355


>gi|406832962|ref|ZP_11092556.1| hypothetical protein SpalD1_15024 [Schlesneria paludicola DSM
           18645]
          Length = 236

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 1/142 (0%)

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           + GL  L S++L  T I D  L+++A L +L +L L    ITD GL  L S   L+ LDL
Sbjct: 68  VKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDL 127

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
            G RITD G   L    +LR L++    +T  G+K +  L +L  LNL +N  + D  LE
Sbjct: 128 AGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNL-ENTKVNDTGLE 186

Query: 343 LISGLTGLVSLNVSNSRITSAG 364
            +     L+ +N+  + +T AG
Sbjct: 187 CVHEFKHLIRINLRRTSVTDAG 208



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 13/198 (6%)

Query: 133 LFYLNLNRCQLSDDGCEKF----------SKIGSLKVLNLGF---NEITDECLVHLKGLT 179
           + + N  R +  D+  +K            K+    V+++ F   +    + L  +KGL 
Sbjct: 13  VLWPNPARAEDQDEAIKKIRLLRGEVRLDDKLPGTPVVSVSFYGSSRFNGKFLHLVKGLD 72

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            L SL+L    IGD  L  +  L NL  L LS+  +  +GL  L     L +++L+ T I
Sbjct: 73  QLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDLAGTRI 132

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           +D  L++L+   SL+ L+L    IT  GL  L+ L  L  L+L   ++ D+G   +  FK
Sbjct: 133 TDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVHEFK 192

Query: 300 NLRSLEICGGGLTDAGVK 317
           +L  + +    +TDAG K
Sbjct: 193 HLIRINLRRTSVTDAGQK 210



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 4/157 (2%)

Query: 232 INLSFTGIS--DGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           +++SF G S  +G    L  GL  L SL+L    I DT L  +  L  LT L L    IT
Sbjct: 50  VSVSFYGSSRFNGKFLHLVKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPIT 109

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
           D+G   LR+ K L +L++ G  +TD G+K +    SL  L+LS+   +T   L+ +SGL 
Sbjct: 110 DAGLIELRSQKKLSTLDLAGTRITDDGLKELSVHHSLRYLDLSETT-ITGMGLKDLSGLP 168

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
            L+SLN+ N+++   GL  +   K+L  + L    VT
Sbjct: 169 NLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVT 205



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 18/190 (9%)

Query: 114 LEGCPVTAAC-----------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162
           L G PV +             L  +  L  L  L+L +  + D   ++ +++ +L  L L
Sbjct: 44  LPGTPVVSVSFYGSSRFNGKFLHLVKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRL 103

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
               ITD  L+ L+    L +L+L    I D+GL  L+   +L+ L+LS+T +   GL+ 
Sbjct: 104 SNVPITDAGLIELRSQKKLSTLDLAGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKD 163

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           LSGL NL S+NL  T ++D  L  +     L  +NL    +TD G  A +       + +
Sbjct: 164 LSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVTDAGQKAFS-------VSM 216

Query: 283 FGARITDSGA 292
              RI DSG+
Sbjct: 217 PNTRIYDSGS 226



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 26/190 (13%)

Query: 36  LVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 94
           +V +     +R +G  ++L KGL +L SL+++  + I D+ +K ++ L NL +L++S   
Sbjct: 49  VVSVSFYGSSRFNGKFLHLVKGLDQLTSLDLRKTD-IGDTHLKEIAELENLTTLRLSNVP 107

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 154
           +TD+G+  L+  +KL+ L+L G  +T                        DDG ++ S  
Sbjct: 108 ITDAGLIELRSQKKLSTLDLAGTRIT------------------------DDGLKELSVH 143

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
            SL+ L+L    IT   L  L GL NL SLNL++  + D GL  +    +L  + L  T 
Sbjct: 144 HSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTS 203

Query: 215 VGSSGLRHLS 224
           V  +G +  S
Sbjct: 204 VTDAGQKAFS 213



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 78/170 (45%), Gaps = 11/170 (6%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           + GL  LTSL  R+ + I    +K  A L NL  L L        GL+ L+   KL +L+
Sbjct: 68  VKGLDQLTSLDLRKTD-IGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLD 126

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +     ITD  +K LS   +L+ L +S + +T  G+  L GL  L  LNLE   V    L
Sbjct: 127 LAGTR-ITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENTKVNDTGL 185

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFS---------KIGSLKVLNLGFN 165
           + +     L  +NL R  ++D G + FS           GS    N+G N
Sbjct: 186 ECVHEFKHLIRINLRRTSVTDAGQKAFSVSMPNTRIYDSGSGPAFNVGMN 235



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260
           GL  L  L+L  T +G + L+ ++ L NL ++ LS   I+D  L +L     L +L+L  
Sbjct: 70  GLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDLAG 129

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
            +ITD GL  L+    L +LDL    IT  G   L    NL SL +    + D G++ + 
Sbjct: 130 TRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVH 189

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           +   L  +NL +  ++TD      +G     S+++ N+RI  +G
Sbjct: 190 EFKHLIRINL-RRTSVTD------AGQKAF-SVSMPNTRIYDSG 225



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           ++    L SL++    + D  +K I +L +LT L LS N  +TD  L  +     L +L+
Sbjct: 68  VKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLS-NVPITDAGLIELRSQKKLSTLD 126

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
           ++ +RIT  GL+ L    +LR L L    +T   +K L    LPNL+S 
Sbjct: 127 LAGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSG--LPNLLSL 173


>gi|451981898|ref|ZP_21930236.1| hypothetical protein NITGR_710030 [Nitrospina gracilis 3/211]
 gi|451760903|emb|CCQ91508.1| hypothetical protein NITGR_710030 [Nitrospina gracilis 3/211]
          Length = 401

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 131/315 (41%), Gaps = 65/315 (20%)

Query: 84  NLKSLQISCSKVTDSGIAYL------KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           +L +L    +K+ DSG+A L      + L++L + N +    +A  +     L +L YL 
Sbjct: 23  DLSTLDFHFTKLGDSGVAELAKSRSVRNLRRLIIPNQKLSSESARVIAESENLSNLQYLK 82

Query: 138 LNRCQLSDDGCEKFSK---IGSLKVLNLGFNEITDECLVHL---KGLTNLESLNLDSCGI 191
           L + +L D+GC   S+   +  LK L L +N+I  E + HL     L NL SL L    I
Sbjct: 83  LYKNKLGDEGCRHISQSRNMEQLKSLRLAWNDIGPEGVKHLCESSNLQNLTSLVLSENPI 142

Query: 192 GDEGLVNLTGLCNLKCLELSD------TQVGSSGLRHLSGLTNLESINLSFTGIS----- 240
           GDEG  +L    NL  LE+ D      T  G+  L       NL+ ++LS   ++     
Sbjct: 143 GDEGARHLAVCQNLPSLEMLDLKKSEITDDGALALAESKNYINLQRLDLSANKLTQKGKD 202

Query: 241 -----------------DGS----------------LRKLAGLSSLKSLNLDARQITDTG 267
                            DG                 + +  GL  LK L L+   IT  G
Sbjct: 203 AIKVFLTLNMIRKRLSDDGETLDLSKLNLGDVEAKVVSEFEGLKDLKKLYLEINHITPVG 262

Query: 268 ---LAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKD 321
              LA    L  LT L L    I D+G A +       NL  L I   G+T+ G+K I D
Sbjct: 263 AGYLAGSEYLKNLTFLSLDHNHIDDAGLAAIAASEYMANLEVLMIEHNGITNEGLKAIAD 322

Query: 322 ---LSSLTLLNLSQN 333
              +++L  L L  N
Sbjct: 323 SEHMANLVRLYLDDN 337



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 31/161 (19%)

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLN---LDARQITDTG---LAALTSLTGLTHLD 281
           +L +++  FT + D  + +LA   S+++L    +  ++++      +A   +L+ L +L 
Sbjct: 23  DLSTLDFHFTKLGDSGVAELAKSRSVRNLRRLIIPNQKLSSESARVIAESENLSNLQYLK 82

Query: 282 LFGARITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
           L+  ++ D G  ++   RN + L+SL +    +   GVKH+              C    
Sbjct: 83  LYKNKLGDEGCRHISQSRNMEQLKSLRLAWNDIGPEGVKHL--------------CE--- 125

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
                 S L  L SL +S + I   G RHL   +NL SL +
Sbjct: 126 -----SSNLQNLTSLVLSENPIGDEGARHLAVCQNLPSLEM 161


>gi|290986035|ref|XP_002675730.1| predicted protein [Naegleria gruberi]
 gi|284089328|gb|EFC42986.1| predicted protein [Naegleria gruberi]
          Length = 483

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 29/279 (10%)

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT 200
           ++ D  C   S++ SL V +   N I DE +  +   L  L  L +   G+GDEG+  L 
Sbjct: 124 EIDDVKCLVNSQLTSLDVCD---NSIGDEGVTLIANSLKQLTKLGIGQVGVGDEGVRQLE 180

Query: 201 GLCNLKCLELSDTQVGSSGLRHL--SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
            L  L  L+ S      S L  +  + L  L+++++    I D  ++ +  LS L SL++
Sbjct: 181 KLTQLTELDASCNDFTISVLVQVIDNSLKQLKTLSVYSCNIEDEHMKDITTLSQLTSLSV 240

Query: 259 DARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
              +IT   L  +  S+  LT+L++    I D+G  YL N K L+ L I    ++  G +
Sbjct: 241 GINRITGNSLKLIGYSMKDLTYLEVANNEIGDAGTEYLCNLKKLKELSISSNKISQLGFE 300

Query: 318 HIKDLSSLTLLN--------------------LSQNCNLTDKTLELIS-GLTGLVSLNVS 356
           HIK +  L +L                     +  +C +  +  E +S  +  L  LN+ 
Sbjct: 301 HIKSMDQLRILQCNNTNIMNQVSTMSHLETLVVISDCKINIEIFESMSKNMKSLTKLNLY 360

Query: 357 NSRITSAG-LRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
            + I     +R +  +++LR L LESC +  N ++ + S
Sbjct: 361 KNAINDMDFVRFIASIQHLRELHLESCSINDNSVEIISS 399



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 140/316 (44%), Gaps = 46/316 (14%)

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
           EG  + A  L  L+ LG      + +  + D+G  +  K+  L  L+   N+ T   LV 
Sbjct: 149 EGVTLIANSLKQLTKLG------IGQVGVGDEGVRQLEKLTQLTELDASCNDFTISVLVQ 202

Query: 175 L--KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR----HLSGLTN 228
           +    L  L++L++ SC I DE + ++T L  L  L +   ++  + L+     +  LT 
Sbjct: 203 VIDNSLKQLKTLSVYSCNIEDEHMKDITTLSQLTSLSVGINRITGNSLKLIGYSMKDLTY 262

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           LE  N     I D     L  L  LK L++ + +I+  G   + S+  L  L      I 
Sbjct: 263 LEVAN---NEIGDAGTEYLCNLKKLKELSISSNKISQLGFEHIKSMDQLRILQCNNTNIM 319

Query: 289 D--SGAAYL--------------------RNFKNLRSLEICGGGLTDAG-VKHIKDLSSL 325
           +  S  ++L                    +N K+L  L +    + D   V+ I  +  L
Sbjct: 320 NQVSTMSHLETLVVISDCKINIEIFESMSKNMKSLTKLNLYKNAINDMDFVRFIASIQHL 379

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT------- 378
             L+L ++C++ D ++E+IS +  L  L V ++ IT  G++HL  L +LR L        
Sbjct: 380 RELHL-ESCSINDNSVEIISSIQNLRGLFVPSNDITDGGVKHLTKLTSLRELDIYCNPIG 438

Query: 379 LESCKVTANDIKRLQS 394
           LE  K+ ++ +K L S
Sbjct: 439 LEGVKIISSGLKGLTS 454



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 140/286 (48%), Gaps = 24/286 (8%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLE 115
           L +L++L++  CN I D  MK ++ L+ L SL +  +++T + +  +   ++ LT L + 
Sbjct: 208 LKQLKTLSVYSCN-IEDEHMKDITTLSQLTSLSVGINRITGNSLKLIGYSMKDLTYLEVA 266

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
              +  A  + L  L  L  L+++  ++S  G E    +  L++L      I ++    +
Sbjct: 267 NNEIGDAGTEYLCNLKKLKELSISSNKISQLGFEHIKSMDQLRILQCNNTNIMNQ----V 322

Query: 176 KGLTNLESLNLDS-CGIGDEGLVNLT-GLCNLKCLELSDTQVGSSG-LRHLSGLTNLESI 232
             +++LE+L + S C I  E   +++  + +L  L L    +     +R ++ + +L  +
Sbjct: 323 STMSHLETLVVISDCKINIEIFESMSKNMKSLTKLNLYKNAINDMDFVRFIASIQHLREL 382

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-------GA 285
           +L    I+D S+  ++ + +L+ L + +  ITD G+  LT LT L  LD++       G 
Sbjct: 383 HLESCSINDNSVEIISSIQNLRGLFVPSNDITDGGVKHLTKLTSLRELDIYCNPIGLEGV 442

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK--DLSSLTLLN 329
           +I  SG       K L SL I    + + G   I+  +L +LT ++
Sbjct: 443 KIISSG------LKGLTSLTISKKDIGERGQYLIRLMNLDTLTYVD 482


>gi|325108768|ref|YP_004269836.1| hypothetical protein Plabr_2212 [Planctomyces brasiliensis DSM
           5305]
 gi|324969036|gb|ADY59814.1| hypothetical protein Plabr_2212 [Planctomyces brasiliensis DSM
           5305]
          Length = 268

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 64/113 (56%)

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
             +L   EI+D+ +  +  LT +  +NL    I D GL +L+GL +L  L L  T +  +
Sbjct: 49  TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDA 108

Query: 219 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 271
           GL+HL+GL  LE +NL  T ISD  L++LA L  LK L +   Q+T  G+  L
Sbjct: 109 GLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKL 161



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 15/142 (10%)

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
              L++ ++    ++ +S LT +  +NL  T I+D  L  L+GL SL  L+L+   ITD 
Sbjct: 49  TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDA 108

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
           GL  LT L  L +L+L+  +I+D+G   L   K L+ L +    +T  GVK +++     
Sbjct: 109 GLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQE----- 163

Query: 327 LLNLSQNCNLTDKTLELISGLT 348
                Q   LT     +ISGL+
Sbjct: 164 -----QRPELT-----IISGLS 175



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 64/115 (55%)

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           + +L    I D+ +  ++ L  +  + L  T +  +GL HLSGL +L  ++L  TGI+D 
Sbjct: 49  TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDA 108

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            L+ L GL+ L+ LNL   +I+D GL  L +L GL  L ++  ++T  G   L+ 
Sbjct: 109 GLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQE 163



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 33/145 (22%)

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           +I+D  +  ++ LT +  ++L G  ITD+G A+L    +L  L +   G+TDAG+KH+  
Sbjct: 56  EISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHL-- 113

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
                                  +GL  L  LN+ +++I+ AGL+ L  LK L+ L +  
Sbjct: 114 -----------------------TGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQ 150

Query: 382 CKVTANDIKRLQSRDLPNLVSFRPE 406
            +VT + +K+LQ +        RPE
Sbjct: 151 TQVTWDGVKKLQEQ--------RPE 167



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 59/98 (60%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           I+D  ++P+S LT +  + +  + +TD+G+A+L GL  L+ L+LE   +T A L  L+ L
Sbjct: 57  ISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHLTGL 116

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
             L YLNL   ++SD G ++ + +  LK L +   ++T
Sbjct: 117 NKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVT 154



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 60/138 (43%), Gaps = 24/138 (17%)

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           +  ++  +++D  I  +  L ++ L+NL G  +T A L  LS L SL  L+L +      
Sbjct: 49  TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTG---- 104

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
                               ITD  L HL GL  LE LNL    I D GL  L  L  LK
Sbjct: 105 --------------------ITDAGLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLK 144

Query: 207 CLELSDTQVGSSGLRHLS 224
            L +  TQV   G++ L 
Sbjct: 145 KLYVWQTQVTWDGVKKLQ 162



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 29/161 (18%)

Query: 213 TQVGSSGLRHLSGLTNLESINLSFT----GISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
           ++V ++G R +    N + + ++F      ISD S++ ++ L+ +  +NL    ITD GL
Sbjct: 27  SKVEANGGRVMKLAQNDDRLEVTFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGL 86

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
           A L+ L  L+ L L                           G+TDAG+KH+  L+ L  L
Sbjct: 87  AHLSGLDSLSRLHLEKT------------------------GITDAGLKHLTGLNKLEYL 122

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369
           NL  +  ++D  L+ ++ L GL  L V  +++T  G++ L+
Sbjct: 123 NLY-DTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQ 162



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           LVNL+G              ITD+ +  LSGL +L  L +  + +TD+G+ +L GL KL 
Sbjct: 73  LVNLRG------------TAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHLTGLNKLE 120

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
            LNL    ++ A L  L+AL  L  L + + Q++ DG +K  +
Sbjct: 121 YLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQE 163



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 3   ENLSGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           +++  +S LT +     R  AIT  G+   +GL +L +L LE+      GL +L GL KL
Sbjct: 60  KSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHLTGLNKL 119

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 104
           E LN+ +   I+D+ ++ L+ L  LK L +  ++VT  G+  L+
Sbjct: 120 EYLNL-YDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQ 162


>gi|290980964|ref|XP_002673201.1| predicted protein [Naegleria gruberi]
 gi|284086783|gb|EFC40457.1| predicted protein [Naegleria gruberi]
          Length = 336

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 12/239 (5%)

Query: 171 CLVHLKGLT--------NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
           C  HLKG T         +  L L+  GI + G++ ++G+  LK L++ + ++     ++
Sbjct: 48  CGHHLKGATIKPLTMLKQVTDLVLNENGISELGVIYISGMIQLKSLDIRNNEINVESAKY 107

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           ++ L  L+S+++S    ++  L  + G+ +L  L +D   I   G   ++ +  LT L +
Sbjct: 108 ITQLRKLQSLSVSVR--NNEVLTLIGGMKNLTRLRIDRNNIGHDGAKIISRMKQLTSLHI 165

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
               +   GA  + + K L  L I    +   G  +I +L  LT L +  NC + D+  +
Sbjct: 166 SNNSLLSEGAKLISSMKKLTELVITNNNIGIMGTFYISELKELTKLCIGFNC-IGDEGAK 224

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPNL 400
            ISGL  LV LNV+ + I  AG + +  L+NL  L+     + A   K + Q R+L  L
Sbjct: 225 HISGLKKLVDLNVTWNEIGLAGAKSIGELRNLTHLSAGENDIPAEGAKAISQLRNLTYL 283



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 119/262 (45%), Gaps = 2/262 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I++  +  +SG+  LKSL I  +++      Y+  L+KL  L++         L  + 
Sbjct: 74  NGISELGVIYISGMIQLKSLDIRNNEINVESAKYITQLRKLQSLSV--SVRNNEVLTLIG 131

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            + +L  L ++R  +  DG +  S++  L  L++  N +  E    +  +  L  L + +
Sbjct: 132 GMKNLTRLRIDRNNIGHDGAKIISRMKQLTSLHISNNSLLSEGAKLISSMKKLTELVITN 191

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             IG  G   ++ L  L  L +    +G  G +H+SGL  L  +N+++  I     + + 
Sbjct: 192 NNIGIMGTFYISELKELTKLCIGFNCIGDEGAKHISGLKKLVDLNVTWNEIGLAGAKSIG 251

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
            L +L  L+     I   G  A++ L  LT+LD+ G  I D G   +     L +L I  
Sbjct: 252 ELRNLTHLSAGENDIPAEGAKAISQLRNLTYLDIVGNPIGDEGGLAISELTKLTTLFIGV 311

Query: 309 GGLTDAGVKHIKDLSSLTLLNL 330
             L++  +  +K +  L + +L
Sbjct: 312 YSLSNCSIDQLKKMKQLRVSDL 333



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 129/319 (40%), Gaps = 53/319 (16%)

Query: 35  NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCS 93
           N+V L  ER +        LK + +L  + I  C + +  + +KPL+ L  +  L ++ +
Sbjct: 17  NVVSLRTERVSDFPKFCTILKSMNQLRRVEI--CGHHLKGATIKPLTMLKQVTDLVLNEN 74

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
            +++ G+ Y+ G+ +L  L++    +       ++ L  L  L                 
Sbjct: 75  GISELGVIYISGMIQLKSLDIRNNEINVESAKYITQLRKLQSL----------------- 117

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-- 211
             S+ V N       +E L  + G+ NL  L +D   IG +G   ++ +  L  L +S  
Sbjct: 118 --SVSVRN-------NEVLTLIGGMKNLTRLRIDRNNIGHDGAKIISRMKQLTSLHISNN 168

Query: 212 ----------------------DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
                                 +  +G  G  ++S L  L  + + F  I D   + ++G
Sbjct: 169 SLLSEGAKLISSMKKLTELVITNNNIGIMGTFYISELKELTKLCIGFNCIGDEGAKHISG 228

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
           L  L  LN+   +I   G  ++  L  LTHL      I   GA  +   +NL  L+I G 
Sbjct: 229 LKKLVDLNVTWNEIGLAGAKSIGELRNLTHLSAGENDIPAEGAKAISQLRNLTYLDIVGN 288

Query: 310 GLTDAGVKHIKDLSSLTLL 328
            + D G   I +L+ LT L
Sbjct: 289 PIGDEGGLAISELTKLTTL 307



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 2/180 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           + G+ NLT L   RNN I   G K  + +  L  L +   + +  G   +  + KL  L 
Sbjct: 130 IGGMKNLTRLRIDRNN-IGHDGAKIISRMKQLTSLHISNNSLLSEGAKLISSMKKLTELV 188

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I   N I       +S L  L  L I  + + D G  ++ GL+KL  LN+    +  A  
Sbjct: 189 IT-NNNIGIMGTFYISELKELTKLCIGFNCIGDEGAKHISGLKKLVDLNVTWNEIGLAGA 247

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            S+  L +L +L+     +  +G +  S++ +L  L++  N I DE  + +  LT L +L
Sbjct: 248 KSIGELRNLTHLSAGENDIPAEGAKAISQLRNLTYLDIVGNPIGDEGGLAISELTKLTTL 307


>gi|241674711|ref|XP_002400628.1| toll, putative [Ixodes scapularis]
 gi|215506335|gb|EEC15829.1| toll, putative [Ixodes scapularis]
          Length = 1344

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 93/373 (24%), Positives = 153/373 (41%), Gaps = 43/373 (11%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I  ++   L GL+ L++L ++ + +      +L+  +KL+ L L    ++A      S
Sbjct: 388 NQIARAEQGALVGLSRLQNLDMAHNALVALPPRFLQATEKLSELYLRNNSLSALPPGLFS 447

Query: 129 ALGSLFYLNLNRCQLSDD--GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
            L  L  L+L   QLS    G +  + +  L VL+L  N +T       + L +L++L L
Sbjct: 448 GLDQLTTLDLAHNQLSSGWLGPDTLADLTRLTVLDLSHNRLTRLDESSFRSLHSLQTLQL 507

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
               I     +    L NL  L LS  ++ S G+   SGL+++  + L    +       
Sbjct: 508 QHNLIESIADLAFASLYNLHTLVLSHNRLKSVGMHMFSGLSSVGGLYLDHNRLESLHSDA 567

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
              +S+L+ + L   +++      + SL  L  LD+    ITD   A  +  ++L  L +
Sbjct: 568 FHNMSTLQEIILAGNRLSSVP-KVVQSLQFLRSLDVADNIITDIQNASYQGLRHLYGLNL 626

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQN----------------------CNLTDKTLELI 344
            G  + +       DL SL +LNL++N                       N  D    L 
Sbjct: 627 MGNHIGNLSQGAFHDLPSLRILNLARNGIQSIEQGTFDDVPDLHALRLDSNFLDDVNGLF 686

Query: 345 SGLTGLVSLNVSNSRI-------TSAGLRHLKPLKN----------LRS-LTLESCKVTA 386
           S L  L+ LN+S +R+          GL+ L    N          L S L L +  V+ 
Sbjct: 687 SNLHDLIMLNISANRVRWFDYALIPIGLQWLDIHDNQIEALGNYFELESILKLRTLDVSH 746

Query: 387 NDIKRLQSRDLPN 399
           N +  L S  LPN
Sbjct: 747 NRLTDLDSSSLPN 759



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 102/394 (25%), Positives = 156/394 (39%), Gaps = 47/394 (11%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMK 59
           TE LS L       + RNN+++A     F+GL  L  LDL       G  G   L  L +
Sbjct: 425 TEKLSEL-------YLRNNSLSALPPGLFSGLDQLTTLDLAHNQLSSGWLGPDTLADLTR 477

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLTLLNLEG 116
           L  L++   N +T  D      L +L++LQ+       + D   A L  L  L L +   
Sbjct: 478 LTVLDLSH-NRLTRLDESSFRSLHSLQTLQLQHNLIESIADLAFASLYNLHTLVLSHNRL 536

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             V       LS++G L YL+ NR  L     + F  + +L+ + L  N ++    V ++
Sbjct: 537 KSVGMHMFSGLSSVGGL-YLDHNR--LESLHSDAFHNMSTLQEIILAGNRLSSVPKV-VQ 592

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            L  L SL++    I D    +  GL +L  L L    +G+        L +L  +NL+ 
Sbjct: 593 SLQFLRSLDVADNIITDIQNASYQGLRHLYGLNLMGNHIGNLSQGAFHDLPSLRILNLAR 652

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITD-----TGLAALTSLT---------------- 275
            GI          +  L +L LD+  + D     + L  L  L                 
Sbjct: 653 NGIQSIEQGTFDDVPDLHALRLDSNFLDDVNGLFSNLHDLIMLNISANRVRWFDYALIPI 712

Query: 276 GLTHLDLFGARITDSGAAY-LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           GL  LD+   +I   G  + L +   LR+L++    LT        DL S +L N  +  
Sbjct: 713 GLQWLDIHDNQIEALGNYFELESILKLRTLDVSHNRLT--------DLDSSSLPNGIEIV 764

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
            L +  L  I   T L   N++   +T   L  L
Sbjct: 765 FLRNNQLRRIQPFTFLGKQNLTRVDLTENRLETL 798



 Score = 41.6 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 95/401 (23%), Positives = 165/401 (41%), Gaps = 67/401 (16%)

Query: 47  IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS--GLTNLKSLQISCS---------KV 95
           I+G   +L GL    SL I+ C   T   + PL+  GL+ L++L I            ++
Sbjct: 241 INGSFGHLSGL---RSLTIERCKIET---VPPLAFAGLSELRNLSIRTYNTDWGKFSLRL 294

Query: 96  TDSGIAYLKGLQKLTLL--NLEGCPVTAACLDSLSALGSLFYLNLNRCQL--------SD 145
           +   ++ L+ L +L L   N++  P +  C      L  L  +NL R +         S+
Sbjct: 295 SPDSLSPLRQLVRLDLSRNNMDSLPPSVLC-----PLVQLVQVNLTRNRFVEVARMGFSE 349

Query: 146 DGC-------------------EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
             C                   + F+ +  L+ L L  N+I       L GL+ L++L++
Sbjct: 350 TRCSPLVQKLDAAHNRLRVLSEKGFASLRQLRELKLDHNQIARAEQGALVGLSRLQNLDM 409

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-----SGLTNLESINLSFTGISD 241
                    LV L         +LS+  + ++ L  L     SGL  L +++L+   +S 
Sbjct: 410 -----AHNALVALPPRFLQATEKLSELYLRNNSLSALPPGLFSGLDQLTTLDLAHNQLSS 464

Query: 242 GSL--RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           G L    LA L+ L  L+L   ++T    ++  SL  L  L L    I         +  
Sbjct: 465 GWLGPDTLADLTRLTVLDLSHNRLTRLDESSFRSLHSLQTLQLQHNLIESIADLAFASLY 524

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
           NL +L +    L   G+     LSS+  L L  N  L     +    ++ L  + ++ +R
Sbjct: 525 NLHTLVLSHNRLKSVGMHMFSGLSSVGGLYLDHN-RLESLHSDAFHNMSTLQEIILAGNR 583

Query: 360 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           ++S   + ++ L+ LRSL +    +T  DI+    + L +L
Sbjct: 584 LSSVP-KVVQSLQFLRSLDVADNIIT--DIQNASYQGLRHL 621


>gi|290974240|ref|XP_002669854.1| predicted protein [Naegleria gruberi]
 gi|284083406|gb|EFC37110.1| predicted protein [Naegleria gruberi]
          Length = 357

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 109/246 (44%), Gaps = 22/246 (8%)

Query: 92  CSKVTDSGIAYLK-----GLQKLTLLNLEGCPVTA--ACLDSLSALG------------- 131
           C    +  + YL       L++L L+ LE   V A    L+SLS +G             
Sbjct: 89  CPYSFEEFVKYLDECQFDSLKRLNLIGLEVSNVVARFGSLESLSLIGMGAEIGNSIGNLS 148

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
            L YLNLN   ++ + C+   K   +K LNL  N+I +E  ++L  L NL  L L+ C I
Sbjct: 149 RLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNI 208

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
            ++G+ +L+ +  L  L +S  ++   G  ++  L NL S  L     S  S++ +  L 
Sbjct: 209 SEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTS--LKAASCSVESIKNITNLI 266

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
            L SLNL    I + G+  +  LT L  L L           YL    ++  L++    L
Sbjct: 267 KLTSLNLGQNSIDNEGVKIIGELTNLKTLTLENNVFQPEAVQYLTKLSSMEVLDLRDNNL 326

Query: 312 TDAGVK 317
           +   VK
Sbjct: 327 SFDNVK 332



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 6/209 (2%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLN 137
           +  L+ L  L ++ S VT     Y++  + +  LNL    +   +CL  L+ L +L  L 
Sbjct: 144 IGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCL-YLTKLKNLTILR 202

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           L  C +S+ G E  S+I +L +LN+  N I D+  V++  L NL SL   SC +  E + 
Sbjct: 203 LEDCNISEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTSLKAASCSV--ESIK 260

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
           N+T L  L  L L    + + G++ +  LTNL+++ L        +++ L  LSS++ L+
Sbjct: 261 NITNLIKLTSLNLGQNSIDNEGVKIIGELTNLKTLTLENNVFQPEAVQYLTKLSSMEVLD 320

Query: 258 LDARQITDTGLAAL--TSLTGLTHLDLFG 284
           L    ++   +  L  T+L  L  + +  
Sbjct: 321 LRDNNLSFDNVKCLNATNLPKLYQIQIIS 349



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 42/238 (17%)

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           NE   +C    +         LD C       +NL GL      E+S+          ++
Sbjct: 83  NEFVSDCPYSFEEFVKY----LDECQFDSLKRLNLIGL------EVSNV---------VA 123

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
              +LES++L   G   G+   +  LS L  LNL+A  +T      +     + +L+L  
Sbjct: 124 RFGSLESLSLIGMGAEIGN--SIGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSD 181

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------C 334
            +I +    YL   KNL  L +    +++ GV+H+  + +LT+LN+S+N          C
Sbjct: 182 NKIGNESCLYLTKLKNLTILRLEDCNISEKGVEHLSQIETLTILNVSKNRIEDDGFVNIC 241

Query: 335 NLTD-----------KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
            L +           ++++ I+ L  L SLN+  + I + G++ +  L NL++LTLE+
Sbjct: 242 KLKNLTSLKAASCSVESIKNITNLIKLTSLNLGQNSIDNEGVKIIGELTNLKTLTLEN 299



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
           ++ +L+ LT+L+L  + +T     Y++  + +++L +    + +    ++  L +LT+L 
Sbjct: 143 SIGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILR 202

Query: 330 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
           L ++CN+++K +E +S +  L  LNVS +RI   G  ++  LKNL SL   SC V +
Sbjct: 203 L-EDCNISEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTSLKAASCSVES 258



 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 7/117 (5%)

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            L  L+L G  +++  A     F +L SL + G G  + G   I +LS LT LNL+ + +
Sbjct: 107 SLKRLNLIGLEVSNVVAR----FGSLESLSLIGMG-AEIG-NSIGNLSRLTYLNLNAS-S 159

Query: 336 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           +T ++ + I     + +LN+S+++I +    +L  LKNL  L LE C ++   ++ L
Sbjct: 160 VTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNISEKGVEHL 216


>gi|56797881|emb|CAH04902.1| internalin A [Listeria monocytogenes]
          Length = 773

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 186/388 (47%), Gaps = 66/388 (17%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 27  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 86

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 87  TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 141

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L +L  L+    Q++D   +  + + SL+ L++  N+++D  + 
Sbjct: 142 LELSSNTISDISALSGLTNLQQLSFGN-QVTD--LKPLANLTSLERLDISSNKVSDISV- 197

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 198 -LAKLTNLESLIATNNQISD--ITPLGILANLDELSLNGNQLKDIG--TLASLTNLTDLD 252

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 253 LANDQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 306

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 307 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 358

Query: 354 NVSNSRITSAG---LRHLKPLKNLRSLT 378
           N       SAG   +  L PL NL  +T
Sbjct: 359 N-----WLSAGHNQISDLTPLANLTRIT 381



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 159/340 (46%), Gaps = 55/340 (16%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 111 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 165

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT+L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 166 F--GNQVTD--LKPLANLTSLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 214

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  ++I++  L  L GLT L
Sbjct: 215 SDITPLGILANLDELSLNGNQLKDIGT--LASLTNLTDLDLANDQISN--LAPLSGLTKL 270

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 271 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 326

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 327 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 384

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAG 315
           L     T+    Y  N       KN+    I    ++D G
Sbjct: 385 LNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGG 424


>gi|342181731|emb|CCC91210.1| putative leucine-rich repeat protein (LRRP) [Trypanosoma congolense
           IL3000]
          Length = 537

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 161/338 (47%), Gaps = 9/338 (2%)

Query: 4   NLSGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           N  GL N++ +  R    + +T + +       +LVKL +E C  I   +  L  +  LE
Sbjct: 3   NAVGLPNMSRMRERHLGGSRVTDRHLCNIGVGKDLVKLYIEACENI-TDISFLADVESLE 61

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            + ++ C  +     + L  +  L++L +  + VTD+ ++ L+  + L  L +E C    
Sbjct: 62  EVTLEGCRNVVRGIFE-LGRMPRLQTLSLKDTVVTDASLSGLRFSRSLVKLLVESCAQLT 120

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             +  ++A+ +L     + C+    G  +  ++  L +L+L    +TD+CL  L    +L
Sbjct: 121 D-VAPVAAVKTLEEARFDGCRNVVKGVGELGRVPYLHILSLRETGVTDQCLQGLCCSRSL 179

Query: 182 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
             L+L+SC  I D G   L  +  LK + L   +    G+  L  +  L+++++  T ++
Sbjct: 180 VELSLESCVHITDVG--PLHQIDTLKAINLDRCENVIKGIGELGKMPRLQTLSMRETRVT 237

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           D +L  L    SL  + L+   ++ T ++ L+++  L  ++L G R    GA  L    +
Sbjct: 238 DETLYSLRNNYSLVEITLEC-CLSITDVSPLSTIVTLQRINLGGCRNVVKGAGPLSKLPD 296

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
           L  L + G  +TD+ V  + +  SL  L+LS   N+TD
Sbjct: 297 LHELSVRGSAITDSCVSDLSESKSLRRLDLSSCENVTD 334



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 152/329 (46%), Gaps = 17/329 (5%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
            L  +  L +LS R    +T + + +     +LV++ LE C  I   +  L  ++ L+ +
Sbjct: 219 ELGKMPRLQTLSMRETR-VTDETLYSLRNNYSLVEITLECCLSI-TDVSPLSTIVTLQRI 276

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           N+  C  +      PLS L +L  L +  S +TDS ++ L   + L  L+L  C      
Sbjct: 277 NLGGCRNVVKG-AGPLSKLPDLHELSVRGSAITDSCVSDLSESKSLRRLDLSSCENVTDV 335

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L     +  L  ++L+RC+    G    +K+  L+VL+L     +D CL  L    N+  
Sbjct: 336 L-PCCRIKLLEEIDLSRCRNISCGVGDMAKLSLLRVLSLVGTNTSDNCLRMLSTNYNITV 394

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLEL---SDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L++  CG     LV++T + +++ LE+   +  +    G+  L  L +L  ++L    I 
Sbjct: 395 LDVSFCG----NLVDMTPIASIELLEVLRANGCKGVVRGVGGLGKLRSLRELSLKEASIK 450

Query: 241 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           + SL  L    SL  L+L +  ++TD  + +L+ +  L  L+L G +    G   +   +
Sbjct: 451 NKSLDGLGESQSLVQLDLASCERLTD--VTSLSHVKTLEILNLNGCKNVTEGLDCMVLMQ 508

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
            LR L + G  L  A    +KDL SL + 
Sbjct: 509 RLRCLHVVGVRLRSAV---LKDLESLNVF 534


>gi|428304289|ref|YP_007141114.1| hypothetical protein Cri9333_0667 [Crinalium epipsammum PCC 9333]
 gi|428245824|gb|AFZ11604.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
           9333]
          Length = 382

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 132/282 (46%), Gaps = 49/282 (17%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E +  L NLT L F  N       +    GL NL  L L R       + ++K L+ L +
Sbjct: 127 EGIQALRNLTELRFGENKI---SDLAPLRGLTNLTTLHLYR-----NQISDVKPLLSLRN 178

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L     +    SD+KPL+GLT L +L +  +K+TD  +  L GL  LT L L G  ++  
Sbjct: 179 LTSLELSSNPISDLKPLAGLTKLTTLGLGGNKITD--LKPLAGLANLTTLELSGNKISD- 235

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L  L+ L +L  L L+  ++SD                          L  + GLT L 
Sbjct: 236 -LKPLAGLANLTKLYLSGNKISD--------------------------LKPVAGLTKLT 268

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L LD+  I D  +  L GL NL  L L + ++    ++ L+ LT+L  + LS   ISD 
Sbjct: 269 KLWLDNNQISD--VQPLAGLINLTFLSLDNNKIND--VQPLANLTSLMGLGLSLNKISD- 323

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
            +  L GL+ L  L+L+  +I+D     +T L GLT+L++ G
Sbjct: 324 -VTPLRGLTKLNWLDLNLNKISD-----VTPLAGLTNLNVNG 359



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 120/239 (50%), Gaps = 23/239 (9%)

Query: 140 RCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           R QL + D     + +  +K LNL   EIT   L  ++ L NL  L      I D  L  
Sbjct: 95  RQQLGTGDKPLTLNALQRVKHLNLINKEIT--SLEGIQALRNLTELRFGENKISD--LAP 150

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L GL NL  L L   Q+  S ++ L  L NL S+ LS   ISD  L+ LAGL+ L +L L
Sbjct: 151 LRGLTNLTTLHLYRNQI--SDVKPLLSLRNLTSLELSSNPISD--LKPLAGLTKLTTLGL 206

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
              +ITD  L  L  L  LT L+L G +I+D     L    NL  L + G  ++D  +K 
Sbjct: 207 GGNKITD--LKPLAGLANLTTLELSGNKISD--LKPLAGLANLTKLYLSGNKISD--LKP 260

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
           +  L+ LT L L  N  ++D  ++ ++GL  L  L++ N++I       ++PL NL SL
Sbjct: 261 VAGLTKLTKLWLDNN-QISD--VQPLAGLINLTFLSLDNNKI-----NDVQPLANLTSL 311


>gi|300867094|ref|ZP_07111761.1| Leucine Rich Repeat domain protein (fragment) [Oscillatoria sp. PCC
           6506]
 gi|300334925|emb|CBN56927.1| Leucine Rich Repeat domain protein (fragment) [Oscillatoria sp. PCC
           6506]
          Length = 334

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 135/280 (48%), Gaps = 46/280 (16%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           LS+LT+L +  NN I+   +K    L NL  LDL         + ++K L  L  LN+  
Sbjct: 83  LSSLTAL-YLYNNQIS--DLKPLQSLTNLTWLDLN-----DNQISDIKPLQSLTKLNVLI 134

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            +    SD+KPL  LTNL SL +  +K++D     +K L+ LT L+L             
Sbjct: 135 LHSNKISDIKPLESLTNLTSLSLYSNKISD-----IKPLESLTNLDL------------- 176

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
                   L L+  ++SD   +    +  L +L L  N+I D  +  L+ LTNL SL+L 
Sbjct: 177 --------LELHNNKISD--IKPLQSLTKLNLLQLHNNQIGD--IKPLQSLTNLTSLSLY 224

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
           S  I D  L  L  L NL  L+LS+ ++  S ++ L  LT L  ++LS   ISD  +  L
Sbjct: 225 SNKISDITL--LQSLTNLTILDLSNNKI--SDIKPLEFLTKLNILDLSNNKISD--IEPL 278

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
             L+ L  L L   QI+D  +  L SLT L  L L G  I
Sbjct: 279 QSLTKLTILYLYNNQISD--IKTLKSLTKLMLLYLGGNSI 316



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 131/249 (52%), Gaps = 24/249 (9%)

Query: 148 CEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           CE  ++ + SL  L L  N+I+D  L  L+ LTNL  L+L+   I D  +  L  L  L 
Sbjct: 76  CEAANQTLSSLTALYLYNNQISD--LKPLQSLTNLTWLDLNDNQISD--IKPLQSLTKLN 131

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            L L   ++  S ++ L  LTNL S++L    ISD  ++ L  L++L  L L   +I+D 
Sbjct: 132 VLILHSNKI--SDIKPLESLTNLTSLSLYSNKISD--IKPLESLTNLDLLELHNNKISD- 186

Query: 267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
            +  L SLT L  L L   +I D     L++  NL SL +    ++D  +  ++ L++LT
Sbjct: 187 -IKPLQSLTKLNLLQLHNNQIGDIKP--LQSLTNLTSLSLYSNKISDITL--LQSLTNLT 241

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT-LESCKVT 385
           +L+LS N     K LE    LT L  L++SN++I+      ++PL++L  LT L      
Sbjct: 242 ILDLSNNKISDIKPLEF---LTKLNILDLSNNKISD-----IEPLQSLTKLTILYLYNNQ 293

Query: 386 ANDIKRLQS 394
            +DIK L+S
Sbjct: 294 ISDIKTLKS 302



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 23/213 (10%)

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           LE      C   ++ L +LT L       L + Q+  S L+ L  LTNL  ++L+   IS
Sbjct: 68  LEKAETTECEAANQTLSSLTALY------LYNNQI--SDLKPLQSLTNLTWLDLNDNQIS 119

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
           D  ++ L  L+ L  L L + +I+D  +  L SLT LT L L+  +I+D     L +  N
Sbjct: 120 D--IKPLQSLTKLNVLILHSNKISD--IKPLESLTNLTSLSLYSNKISDIKP--LESLTN 173

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L  LE+    ++D     IK L SLT LNL Q  N     ++ +  LT L SL++ +++I
Sbjct: 174 LDLLELHNNKISD-----IKPLQSLTKLNLLQLHNNQIGDIKPLQSLTNLTSLSLYSNKI 228

Query: 361 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
           +   L  L+ L NL  L L + K++  DIK L+
Sbjct: 229 SDITL--LQSLTNLTILDLSNNKIS--DIKPLE 257



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 23/199 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L  L+NLTSLS   N       +K    L NL  L+L      +  + ++K L  L  LN
Sbjct: 146 LESLTNLTSLSLYSNK---ISDIKPLESLTNLDLLELH-----NNKISDIKPLQSLTKLN 197

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   +     D+KPL  LTNL SL +  +K++D  I  L+ L  LT+L+L    ++   +
Sbjct: 198 LLQLHNNQIGDIKPLQSLTNLTSLSLYSNKISD--ITLLQSLTNLTILDLSNNKISD--I 253

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL--- 181
             L  L  L  L+L+  ++SD   E    +  L +L L  N+I+D  +  LK LT L   
Sbjct: 254 KPLEFLTKLNILDLSNNKISD--IEPLQSLTKLTILYLYNNQISD--IKTLKSLTKLMLL 309

Query: 182 ----ESLNLDSCGIGDEGL 196
                S++  +C +  E +
Sbjct: 310 YLGGNSIDTKTCPLSPESI 328


>gi|321455314|gb|EFX66450.1| hypothetical protein DAPPUDRAFT_302690 [Daphnia pulex]
          Length = 397

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 166/341 (48%), Gaps = 39/341 (11%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLESL 63
           G+  +  LS RR+     QG+       N+  LDL  C   T I         +  L+ L
Sbjct: 73  GIRRVQILSLRRSLRDVTQGLP------NIESLDLSGCFNVTDIGIAHALTADVPTLKRL 126

Query: 64  NIKWCNCITDSDMKPLSGL-TNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-PV 119
           N+  C  ITDS +  L+     L+ L +  C  VT++G+  +  GL+ L  LNL  C  V
Sbjct: 127 NLSLCKQITDSSLSKLAQYCRQLQELDLGGCCNVTNAGLLLIAWGLKSLKSLNLRSCWHV 186

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK-GL 178
           +   + SL+ LGS    NL    L    C+K                +TD+ L+H+  GL
Sbjct: 187 SDLGIASLAGLGSDAEGNLALEHLGLQDCQK----------------LTDDALMHVSTGL 230

Query: 179 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESINLS 235
             L+S+NL  C  I D GL  L  + +L  L L S   +   G+ +L+ G + + S+++S
Sbjct: 231 KQLKSINLSFCLSISDSGLKYLAKMPSLAELNLRSCDNISDVGMAYLAEGGSRITSLDVS 290

Query: 236 FTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD-S 290
           F   I D ++  +A GL  LK L+L A  ++D GL  +  SL  L  L++   +RITD S
Sbjct: 291 FCDRIDDQAVVHVAQGLVHLKQLSLSACHVSDEGLIRVALSLLDLQTLNIGQCSRITDRS 350

Query: 291 GAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 330
             A   + + LR +++ G   +T +G++ I  L  L++LNL
Sbjct: 351 IQAVADHLRKLRCIDLYGCTKITTSGLEKIMKLPELSVLNL 391



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 7/169 (4%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESL 63
           +GL  L S++     +I+  G+K  A + +L +L+L  C  I   G+  L +G  ++ SL
Sbjct: 228 TGLKQLKSINLSFCLSISDSGLKYLAKMPSLAELNLRSCDNISDVGMAYLAEGGSRITSL 287

Query: 64  NIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLK-GLQKLTLLNLEGCP-VT 120
           ++ +C+ I D  +  ++ GL +LK L +S   V+D G+  +   L  L  LN+  C  +T
Sbjct: 288 DVSFCDRIDDQAVVHVAQGLVHLKQLSLSACHVSDEGLIRVALSLLDLQTLNIGQCSRIT 347

Query: 121 AACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEI 167
              + +++  L  L  ++L  C +++  G EK  K+  L VLNLG   I
Sbjct: 348 DRSIQAVADHLRKLRCIDLYGCTKITTSGLEKIMKLPELSVLNLGLWHI 396



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 21/238 (8%)

Query: 176 KGLTNLESLNLDSC-GIGDEGLVN-LTG-LCNLKCLELS-DTQVGSSGLRHLSGL-TNLE 230
           +GL N+ESL+L  C  + D G+ + LT  +  LK L LS   Q+  S L  L+     L+
Sbjct: 91  QGLPNIESLDLSGCFNVTDIGIAHALTADVPTLKRLNLSLCKQITDSSLSKLAQYCRQLQ 150

Query: 231 SINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSL-------TGLTHL 280
            ++L     +++  L  +A GL SLKSLNL +   ++D G+A+L  L         L HL
Sbjct: 151 ELDLGGCCNVTNAGLLLIAWGLKSLKSLNLRSCWHVSDLGIASLAGLGSDAEGNLALEHL 210

Query: 281 DLFG-ARITDSGAAYLRN-FKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
            L    ++TD    ++    K L+S+ +     ++D+G+K++  + SL  LNL    N++
Sbjct: 211 GLQDCQKLTDDALMHVSTGLKQLKSINLSFCLSISDSGLKYLAKMPSLAELNLRSCDNIS 270

Query: 338 DKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 392
           D  +  L  G + + SL+VS   RI    + H+ + L +L+ L+L +C V+   + R+
Sbjct: 271 DVGMAYLAEGGSRITSLDVSFCDRIDDQAVVHVAQGLVHLKQLSLSACHVSDEGLIRV 328


>gi|260788598|ref|XP_002589336.1| hypothetical protein BRAFLDRAFT_77788 [Branchiostoma floridae]
 gi|229274513|gb|EEN45347.1| hypothetical protein BRAFLDRAFT_77788 [Branchiostoma floridae]
          Length = 1470

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 130/261 (49%), Gaps = 25/261 (9%)

Query: 79   LSGLTNLKSLQISCSKVTDSGIAYL-KGL---QKLTLLNLEGCPVTAACLDSLSALGSLF 134
            +  L+ L+ + +S + ++D  +  L +GL   QKL  +NL    ++    D L  L SL 
Sbjct: 1116 IQHLSLLEEIDLSHNVISDEAVPSLAEGLGSCQKLKKVNLSHNKLSGRG-DFLPPLPSLE 1174

Query: 135  YLNLNRCQLSDDGCEKFSK-IGS---LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190
             ++L+   +SD+     ++ +GS   LK +NL  N+++D     L  L NLE ++L    
Sbjct: 1175 EIDLSYNAISDEAVPGLAEGLGSCQNLKKVNLSHNKLSDRGDF-LPPLPNLEEIDLSHNI 1233

Query: 191  IGDEGLVNLTG----LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
            I DE +  L G      NLK ++LS  ++   G   L  L NLE I+LS+  I D +   
Sbjct: 1234 ISDEAVPGLAGSLGSCQNLKKVDLSHNKLSDRG-HFLPPLPNLEEIDLSYNAIGDEAEPG 1292

Query: 247  LA-GLSS---LKSLNLDARQITDTG--LAALTSLTGLTHLDLFGARITDSG----AAYLR 296
            LA GL S   LK +NL   +++D G   AA   L  LTH+D++    +D      AA+L+
Sbjct: 1293 LAEGLGSCQKLKKVNLSHNKLSDVGELTAAFIDLPFLTHVDIYNNSFSDESLPTIAAWLK 1352

Query: 297  NFKNLRSLEICGGGLTDAGVK 317
                +  + + G   +  GV+
Sbjct: 1353 VRTEVERVWMRGNRFSAEGVR 1373



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 147/320 (45%), Gaps = 33/320 (10%)

Query: 76   MKPLSGLTNLKSLQISCSKVTDSG---IAYLKG----LQKLTLLNLEGCPVTAACLDSLS 128
            +K L  L NL+ L +  S   + G   I+ L G    L+KL L +     +       + 
Sbjct: 1058 LKFLPQLPNLQELALCVSCQGEEGAEHISQLYGVRHVLKKLKLKDWSLDSIMRLSTQMIQ 1117

Query: 129  ALGSLFYLNLNRCQLSDDGCEKFSK-IGS---LKVLNLGFNEITDECLVHLKGLTNLESL 184
             L  L  ++L+   +SD+     ++ +GS   LK +NL  N+++      L  L +LE +
Sbjct: 1118 HLSLLEEIDLSHNVISDEAVPSLAEGLGSCQKLKKVNLSHNKLSGRGDF-LPPLPSLEEI 1176

Query: 185  NLDSCGIGDEGLVNLT---GLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
            +L    I DE +  L    G C NLK + LS  ++   G   L  L NLE I+LS   IS
Sbjct: 1177 DLSYNAISDEAVPGLAEGLGSCQNLKKVNLSHNKLSDRG-DFLPPLPNLEEIDLSHNIIS 1235

Query: 241  DGSLRKLAG----LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG----A 292
            D ++  LAG      +LK ++L   +++D G   L  L  L  +DL    I D      A
Sbjct: 1236 DEAVPGLAGSLGSCQNLKKVDLSHNKLSDRG-HFLPPLPNLEEIDLSYNAIGDEAEPGLA 1294

Query: 293  AYLRNFKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKTLELISGL--- 347
              L + + L+ + +    L+D G       DL  LT +++  N + +D++L  I+     
Sbjct: 1295 EGLGSCQKLKKVNLSHNKLSDVGELTAAFIDLPFLTHVDIYNN-SFSDESLPTIAAWLKV 1353

Query: 348  -TGLVSLNVSNSRITSAGLR 366
             T +  + +  +R ++ G+R
Sbjct: 1354 RTEVERVWMRGNRFSAEGVR 1373


>gi|448825651|ref|YP_007418582.1| putative F-box/LRR-repeat protein [Megavirus lba]
 gi|444236836|gb|AGD92606.1| putative F-box/LRR-repeat protein [Megavirus lba]
          Length = 559

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 193/447 (43%), Gaps = 118/447 (26%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 68
            N+ S++  R N IT + ++   G+    K++L  C  I G     K L   E++N+  C
Sbjct: 65  QNIKSINLSRTN-ITDKELQFLCGI---TKINLYCCKNITGS--GFKYLQLAENINLSGC 118

Query: 69  NCITDSDMKPLSGL-----------------------------------TNLKSLQISCS 93
           N I  S+++ LS +                                   T +K + +S +
Sbjct: 119 NQIIGSELRYLSNIVKINLSRTNIDDQAIEYLVFGQKIDGNKEILIQPQTKIKFIDLSFT 178

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF-------------YLN-- 137
           K+T+  I+YL  ++   ++N+  C  VT++CL  L  +  ++             YLN  
Sbjct: 179 KITNYSISYLSNVK---IININSCEFVTSSCLQYLHNITHIYMNTYNVIIGDNIKYLNKI 235

Query: 138 ----LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL---ESLNLDSCG 190
               LN   LSD+  E    I  L++ N   ++IT + L  LK L  L    S N+D+  
Sbjct: 236 KLLVLNDHTLSDNQLEYIQNIEHLEIYNAS-DKITHQGLQKLKNLKILSLRHSYNIDTIS 294

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG 249
                 + +  L N  C +++D+         L  L +LE+INLS+   I+D  L+ L  
Sbjct: 295 FIPTNKIRILDLKN--CHQVTDSS--------LQYLPHLETINLSWCYKITDNGLKNLQH 344

Query: 250 LSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN-------- 300
           ++   ++NL    +ITD GL  L+    +     +  +ITD G  +L+N KN        
Sbjct: 345 VT---NINLSGCHRITDNGLVYLSKADSIN--ISYCIKITDDGLKHLQNVKNIKLGYHST 399

Query: 301 ------------------LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
                             ++ ++     +TD G+ ++ +  SL+LL      N+TD  L+
Sbjct: 400 SDIYMIEYFEYDFSKEKYIKEIKNTKQLITDIGLSYLINTQSLSLLYCE---NITDDGLQ 456

Query: 343 LISGLTGLVSLNVSN-SRITSAGLRHL 368
            +S +    S++++N  +I   GL++L
Sbjct: 457 YLSKIK---SISINNCPKIIGTGLKYL 480



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 151/353 (42%), Gaps = 86/353 (24%)

Query: 84  NLKSLQISCSKVTDSGIAYLKGLQKLTL-------------------LNLEGCPVTAACL 124
           N+KS+ +S + +TD  + +L G+ K+ L                   +NL GC       
Sbjct: 66  NIKSINLSRTNITDKELQFLCGITKINLYCCKNITGSGFKYLQLAENINLSGCNQIIG-- 123

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKF---SKIG-----------SLKVLNLGFNEITDE 170
             L  L ++  +NL+R  + D   E      KI             +K ++L F +IT+ 
Sbjct: 124 SELRYLSNIVKINLSRTNIDDQAIEYLVFGQKIDGNKEILIQPQTKIKFIDLSFTKITNY 183

Query: 171 CLVHLKGLTNLESLNLDSCG------------------------IGDEGLVNLTGLCNLK 206
            + +   L+N++ +N++SC                         IGD    N+  L  +K
Sbjct: 184 SISY---LSNVKIININSCEFVTSSCLQYLHNITHIYMNTYNVIIGD----NIKYLNKIK 236

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL---KSLNLDARQI 263
            L L+D  +  + L ++  + +LE  N S   I+   L+KL  L  L    S N+D    
Sbjct: 237 LLVLNDHTLSDNQLEYIQNIEHLEIYNAS-DKITHQGLQKLKNLKILSLRHSYNIDTISF 295

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
             T    +  L           ++TDS   YL + + + +L  C   +TD G   +K+L 
Sbjct: 296 IPTNKIRILDLKN-------CHQVTDSSLQYLPHLETI-NLSWC-YKITDNG---LKNLQ 343

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLKPLKNLR 375
            +T +NLS    +TD  L  +S      S+N+S   +IT  GL+HL+ +KN++
Sbjct: 344 HVTNINLSGCHRITDNGLVYLSKAD---SINISYCIKITDDGLKHLQNVKNIK 393



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 140/307 (45%), Gaps = 35/307 (11%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + L  L NL  LS R +  I      +F     +  LDL+ C ++     +L+ L  LE+
Sbjct: 271 QGLQKLKNLKILSLRHSYNIDTI---SFIPTNKIRILDLKNCHQVTDS--SLQYLPHLET 325

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTA 121
           +N+ WC  ITD+ +K L  +TN+      C ++TD+G+ Y   L K   +N+  C  +T 
Sbjct: 326 INLSWCYKITDNGLKNLQHVTNINLS--GCHRITDNGLVY---LSKADSINISYCIKITD 380

Query: 122 ACLDSLSALGS--LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
             L  L  + +  L Y + +   + +     FSK   +K +      ITD   + L  L 
Sbjct: 381 DGLKHLQNVKNIKLGYHSTSDIYMIEYFEYDFSKEKYIKEIKNTKQLITD---IGLSYLI 437

Query: 180 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFT 237
           N +SL+L  C  I D+GL  L+    +K + +++  ++  +GL++LS   + + INLS  
Sbjct: 438 NTQSLSLLYCENITDDGLQYLSK---IKSISINNCPKIIGTGLKYLS---DCQKINLSNV 491

Query: 238 GISDGSLRKLAGLSSLKSLN----------LDARQITDTGLAALTSLTGLTHLDLFGARI 287
            +   SL+ L   S +K  N            A++I  +G   +T   GL HL       
Sbjct: 492 RLCRSSLKYLNLFSKIKINNNFTDDDLKYLYRAKKIKLSGFNKITK-NGLKHLHQVDKLF 550

Query: 288 TDSGAAY 294
                +Y
Sbjct: 551 IQKSISY 557


>gi|388455805|ref|ZP_10138100.1| hypothetical protein FdumT_04498 [Fluoribacter dumoffii Tex-KL]
          Length = 398

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 103/200 (51%)

Query: 85  LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
           LKSL +  + + + GI +L+    +  ++LE   +    + ++    +LFYLNL++  + 
Sbjct: 194 LKSLYLGNNHLGNEGIKFLENNHSINFIDLENNNIDQDGIPTIVRKPNLFYLNLDKNPIH 253

Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
           + G    ++   ++ L++    +  E    L  L +L  LN+D   IGDEG++ L  + +
Sbjct: 254 NAGAALLAQASMVRWLSIADCRVGIEGAQALAALHHLAMLNIDKNFIGDEGIIALAKMRS 313

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           L  L  ++  +G  G ++L+    L++++L+   I D     LA  ++L +L++   QI+
Sbjct: 314 LNNLYANNNSIGDEGAKNLANAIQLQNLSLNHNQIGDEGALALAETATLYALDVGYNQIS 373

Query: 265 DTGLAALTSLTGLTHLDLFG 284
             G+ AL +   L +L+  G
Sbjct: 374 VIGVNALKNNEALAYLNTQG 393



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 110/240 (45%), Gaps = 5/240 (2%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITDSDMK 77
           N I A G K  A    L+ L L R ++I  G    + L   E+L   +   N + +  +K
Sbjct: 154 NPIGASGAKELAKNKTLIHLSL-RKSQI--GAAGARALFANETLKSLYLGNNHLGNEGIK 210

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
            L    ++  + +  + +   GI  +     L  LNL+  P+  A    L+    + +L+
Sbjct: 211 FLENNHSINFIDLENNNIDQDGIPTIVRKPNLFYLNLDKNPIHNAGAALLAQASMVRWLS 270

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           +  C++  +G +  + +  L +LN+  N I DE ++ L  + +L +L  ++  IGDEG  
Sbjct: 271 IADCRVGIEGAQALAALHHLAMLNIDKNFIGDEGIIALAKMRSLNNLYANNNSIGDEGAK 330

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
           NL     L+ L L+  Q+G  G   L+    L ++++ +  IS   +  L    +L  LN
Sbjct: 331 NLANAIQLQNLSLNHNQIGDEGALALAETATLYALDVGYNQISVIGVNALKNNEALAYLN 390



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 130/285 (45%), Gaps = 1/285 (0%)

Query: 100 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 159
           +AYL    ++T L+L    +     + L++   + YL L   ++   G E  S+  SL  
Sbjct: 65  VAYLDKHPEITRLSLSDNQIGYQGAELLASNTHIRYLFLTGNRIGSLGAEALSQNTSLIY 124

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L LG N I       L   + L  L+LDS  IG  G   L     L  L L  +Q+G++G
Sbjct: 125 LLLGENHIGPYGAEALAKNSTLFFLSLDSNPIGASGAKELAKNKTLIHLSLRKSQIGAAG 184

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
            R L     L+S+ L    + +  ++ L    S+  ++L+   I   G+  +     L +
Sbjct: 185 ARALFANETLKSLYLGNNHLGNEGIKFLENNHSINFIDLENNNIDQDGIPTIVRKPNLFY 244

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L+L    I ++GAA L     +R L I    +   G + +  L  L +LN+ +N  + D+
Sbjct: 245 LNLDKNPIHNAGAALLAQASMVRWLSIADCRVGIEGAQALAALHHLAMLNIDKNF-IGDE 303

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
            +  ++ +  L +L  +N+ I   G ++L     L++L+L   ++
Sbjct: 304 GIIALAKMRSLNNLYANNNSIGDEGAKNLANAIQLQNLSLNHNQI 348



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 116/265 (43%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I     + L+  + L  L +  + +  SG   L   + L  L+L    + AA   +L 
Sbjct: 130 NHIGPYGAEALAKNSTLFFLSLDSNPIGASGAKELAKNKTLIHLSLRKSQIGAAGARALF 189

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
           A  +L  L L    L ++G +      S+  ++L  N I  + +  +    NL  LNLD 
Sbjct: 190 ANETLKSLYLGNNHLGNEGIKFLENNHSINFIDLENNNIDQDGIPTIVRKPNLFYLNLDK 249

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             I + G   L     ++ L ++D +VG  G + L+ L +L  +N+    I D  +  LA
Sbjct: 250 NPIHNAGAALLAQASMVRWLSIADCRVGIEGAQALAALHHLAMLNIDKNFIGDEGIIALA 309

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
            + SL +L  +   I D G   L +   L +L L   +I D GA  L     L +L++  
Sbjct: 310 KMRSLNNLYANNNSIGDEGAKNLANAIQLQNLSLNHNQIGDEGALALAETATLYALDVGY 369

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQN 333
             ++  GV  +K+  +L  LN   N
Sbjct: 370 NQISVIGVNALKNNEALAYLNTQGN 394



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 130/309 (42%), Gaps = 1/309 (0%)

Query: 88  LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 147
           L +S +++   G   L     +  L L G  + +   ++LS   SL YL L    +   G
Sbjct: 77  LSLSDNQIGYQGAELLASNTHIRYLFLTGNRIGSLGAEALSQNTSLIYLLLGENHIGPYG 136

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
            E  +K  +L  L+L  N I       L     L  L+L    IG  G   L     LK 
Sbjct: 137 AEALAKNSTLFFLSLDSNPIGASGAKELAKNKTLIHLSLRKSQIGAAGARALFANETLKS 196

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267
           L L +  +G+ G++ L    ++  I+L    I    +  +    +L  LNLD   I + G
Sbjct: 197 LYLGNNHLGNEGIKFLENNHSINFIDLENNNIDQDGIPTIVRKPNLFYLNLDKNPIHNAG 256

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
            A L   + +  L +   R+   GA  L    +L  L I    + D G+  +  + SL  
Sbjct: 257 AALLAQASMVRWLSIADCRVGIEGAQALAALHHLAMLNIDKNFIGDEGIIALAKMRSLNN 316

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387
           L  + N ++ D+  + ++    L +L++++++I   G   L     L +L +   +++  
Sbjct: 317 L-YANNNSIGDEGAKNLANAIQLQNLSLNHNQIGDEGALALAETATLYALDVGYNQISVI 375

Query: 388 DIKRLQSRD 396
            +  L++ +
Sbjct: 376 GVNALKNNE 384


>gi|386333662|ref|YP_006029832.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
 gi|334196111|gb|AEG69296.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
          Length = 637

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 166/386 (43%), Gaps = 41/386 (10%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           I  +G +  AG ++L  L+        GG   LK    LESL++   N I     + L+G
Sbjct: 237 IGDRGAQLLAGKLSLKTLNAADGGIGVGGCAALKDSPALESLDMS-GNRIGGQGPEYLAG 295

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--N 139
             ++K+L++ C  VTD GI  L    +LT L++ G  +    L  L A  SL  L++  N
Sbjct: 296 SKSIKTLRLCCCGVTDPGIQALAKNNQLTSLDVSGNYIGNDALRELVASPSLTELDVSCN 355

Query: 140 RC-------QLSDDGCE-----------KFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
           R        Q  ++G +           + + + SLK     FN+   E L      T  
Sbjct: 356 RPHTPAPQHQKEEEGVQMAFALAEGMVGRATPLASLKADGNWFNDFAAEMLAFPTVKT-- 413

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
            SL+L S  IG  G   L     LK L+L+  ++G  G + L+G  +L ++ +    ++D
Sbjct: 414 ASLSLKSNLIGPAGAEKLAENPVLKSLDLTQNRIGDEGAQALAGSKSLTTLAVLNCLVTD 473

Query: 242 GSLRKLAGLSSLKSLNL------------------DARQITDTGLAALTSLTGLTHLDLF 283
             +  LA   +LKSLNL                   A +IT  G++AL     LT L + 
Sbjct: 474 TGVEALASNRTLKSLNLGNLVTETENEAEQAGYDETANEITVAGVSALAKNRSLTSLSVQ 533

Query: 284 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
           G    D     L   + L SL +    +T A V  +     LT L++  N +L  + ++ 
Sbjct: 534 GNLCGDDAVIALAKNRTLTSLNVAYTDMTPASVPELARNPVLTSLSVRWNYDLGPQGIQA 593

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLK 369
           ++    L SL+  N+     G + L+
Sbjct: 594 LAKSQSLTSLDARNTSKGEVGAKALE 619



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 1/144 (0%)

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
              LES+N+    I D   + LAG  SLK+LN     I   G AAL     L  LD+ G 
Sbjct: 224 FPQLESLNVKGARIGDRGAQLLAGKLSLKTLNAADGGIGVGGCAALKDSPALESLDMSGN 283

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           RI   G  YL   K++++L +C  G+TD G++ +   + LT L++S N    D   EL++
Sbjct: 284 RIGGQGPEYLAGSKSIKTLRLCCCGVTDPGIQALAKNNQLTSLDVSGNYIGNDALRELVA 343

Query: 346 GLTGLVSLNVSNSRITSAGLRHLK 369
             + L  L+VS +R  +   +H K
Sbjct: 344 SPS-LTELDVSCNRPHTPAPQHQK 366



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 85/199 (42%), Gaps = 11/199 (5%)

Query: 124 LDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           LD L  L  +L +L+L  C   D G + ++ I  L  +  G   +             LE
Sbjct: 179 LDDLKKLPPTLRHLDLGECA-PDCGAKSYAAIQYLTTVLPGTGTVP---------FPQLE 228

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLN+    IGD G   L G  +LK L  +D  +G  G   L     LES+++S   I   
Sbjct: 229 SLNVKGARIGDRGAQLLAGKLSLKTLNAADGGIGVGGCAALKDSPALESLDMSGNRIGGQ 288

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
               LAG  S+K+L L    +TD G+ AL     LT LD+ G  I +     L    +L 
Sbjct: 289 GPEYLAGSKSIKTLRLCCCGVTDPGIQALAKNNQLTSLDVSGNYIGNDALRELVASPSLT 348

Query: 303 SLEICGGGLTDAGVKHIKD 321
            L++          +H K+
Sbjct: 349 ELDVSCNRPHTPAPQHQKE 367



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 113/277 (40%), Gaps = 51/277 (18%)

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           GC       +L+ L++  N I  +   +L G  ++++L L  CG+ D G+  L     L 
Sbjct: 265 GCAALKDSPALESLDMSGNRIGGQGPEYLAGSKSIKTLRLCCCGVTDPGIQALAKNNQLT 324

Query: 207 CLELSDTQVGSSGLRHL---SGLTNL------------------ESINLSFTGISDGSLR 245
            L++S   +G+  LR L     LT L                  E + ++F  +++G + 
Sbjct: 325 SLDVSGNYIGNDALRELVASPSLTELDVSCNRPHTPAPQHQKEEEGVQMAF-ALAEGMVG 383

Query: 246 KLAGLSSLK----------------------SLNLDARQITDTGLAALTSLTGLTHLDLF 283
           +   L+SLK                      SL+L +  I   G   L     L  LDL 
Sbjct: 384 RATPLASLKADGNWFNDFAAEMLAFPTVKTASLSLKSNLIGPAGAEKLAENPVLKSLDLT 443

Query: 284 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
             RI D GA  L   K+L +L +    +TD GV+ +    +L  LNL      T+   E 
Sbjct: 444 QNRIGDEGAQALAGSKSLTTLAVLNCLVTDTGVEALASNRTLKSLNLGNLVTETENEAE- 502

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
                     + + + IT AG+  L   ++L SL+++
Sbjct: 503 ------QAGYDETANEITVAGVSALAKNRSLTSLSVQ 533



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 113/263 (42%), Gaps = 21/263 (7%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           LN+   ++ D G +  +   SLK LN     I       LK    LESL++    IG +G
Sbjct: 230 LNVKGARIGDRGAQLLAGKLSLKTLNAADGGIGVGGCAALKDSPALESLDMSGNRIGGQG 289

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
              L G  ++K L L    V   G++ L+    L S+++S   I + +LR+L    SL  
Sbjct: 290 PEYLAGSKSIKTLRLCCCGVTDPGIQALAKNNQLTSLDVSGNYIGNDALRELVASPSLTE 349

Query: 256 LNL---------DARQITDTGLAALTSL--------TGLTHLDLFGARITDSGAAYLRNF 298
           L++            Q  + G+    +L        T L  L   G    D  A  L  F
Sbjct: 350 LDVSCNRPHTPAPQHQKEEEGVQMAFALAEGMVGRATPLASLKADGNWFNDFAAEMLA-F 408

Query: 299 KNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
             ++  SL +    +  AG + + +   L  L+L+QN  + D+  + ++G   L +L V 
Sbjct: 409 PTVKTASLSLKSNLIGPAGAEKLAENPVLKSLDLTQN-RIGDEGAQALAGSKSLTTLAVL 467

Query: 357 NSRITSAGLRHLKPLKNLRSLTL 379
           N  +T  G+  L   + L+SL L
Sbjct: 468 NCLVTDTGVEALASNRTLKSLNL 490


>gi|320164980|gb|EFW41879.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 769

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 115/277 (41%), Gaps = 26/277 (9%)

Query: 12  TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 71
           TSLS   +N IT+    AF  L  LV + L+                          N I
Sbjct: 45  TSLSLY-DNQITSLPASAFTSLTALVAVYLQD-------------------------NQI 78

Query: 72  TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131
           T       +G+T LK L ++ +++T        GL  L  L L G  +T   L++   L 
Sbjct: 79  TAVPASAFAGMTTLKQLHLANNQLTSISTGTFAGLTSLVSLYLAGNQITTIPLNAFVDLT 138

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
            L  L LN  Q++D     F+ +  +K L L  N+IT        GLT L  L L S  I
Sbjct: 139 QLVGLELNNNQITDIPASSFTGLSGMKRLTLNNNQITILSANAFTGLTALTELYLSSNTI 198

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
                   TGL  L  +EL   Q+ S      +GL++L  + LS   I+  S     GL+
Sbjct: 199 TSISANAFTGLSALTMVELQFNQITSIASNSFTGLSSLIFLGLSSNRITSISDNAFTGLT 258

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
            L SL L + QIT    +ALT +  L  L L G   T
Sbjct: 259 QLVSLTLFSNQITSISASALTGMPVLLQLTLTGNPFT 295



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 103/227 (45%), Gaps = 1/227 (0%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           L+L  N+IT         LT L ++ L    I         G+  LK L L++ Q+ S  
Sbjct: 47  LSLYDNQITSLPASAFTSLTALVAVYLQDNQITAVPASAFAGMTTLKQLHLANNQLTSIS 106

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
               +GLT+L S+ L+   I+   L     L+ L  L L+  QITD   ++ T L+G+  
Sbjct: 107 TGTFAGLTSLVSLYLAGNQITTIPLNAFVDLTQLVGLELNNNQITDIPASSFTGLSGMKR 166

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L L   +IT   A        L  L +    +T         LS+LT++ L  N  +T  
Sbjct: 167 LTLNNNQITILSANAFTGLTALTELYLSSNTITSISANAFTGLSALTMVELQFN-QITSI 225

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
                +GL+ L+ L +S++RITS        L  L SLTL S ++T+
Sbjct: 226 ASNSFTGLSSLIFLGLSSNRITSISDNAFTGLTQLVSLTLFSNQITS 272



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 105/246 (42%)

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
           + N IT       + LT L ++ +  +++T    +   G+  L  L+L    +T+    +
Sbjct: 50  YDNQITSLPASAFTSLTALVAVYLQDNQITAVPASAFAGMTTLKQLHLANNQLTSISTGT 109

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
            + L SL  L L   Q++      F  +  L  L L  N+ITD       GL+ ++ L L
Sbjct: 110 FAGLTSLVSLYLAGNQITTIPLNAFVDLTQLVGLELNNNQITDIPASSFTGLSGMKRLTL 169

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
           ++  I        TGL  L  L LS   + S      +GL+ L  + L F  I+  +   
Sbjct: 170 NNNQITILSANAFTGLTALTELYLSSNTITSISANAFTGLSALTMVELQFNQITSIASNS 229

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
             GLSSL  L L + +IT     A T LT L  L LF  +IT   A+ L     L  L +
Sbjct: 230 FTGLSSLIFLGLSSNRITSISDNAFTGLTQLVSLTLFSNQITSISASALTGMPVLLQLTL 289

Query: 307 CGGGLT 312
            G   T
Sbjct: 290 TGNPFT 295



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 115/275 (41%), Gaps = 28/275 (10%)

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
           G   L+L + +   + A+   SL+AL +++   L   Q++      F+ + +LK L+L  
Sbjct: 43  GTTSLSLYDNQITSLPASAFTSLTALVAVY---LQDNQITAVPASAFAGMTTLKQLHLAN 99

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
           N++T        GLT+L SL L    I    L     L  L  LEL++ Q          
Sbjct: 100 NQLTSISTGTFAGLTSLVSLYLAGNQITTIPLNAFVDLTQLVGLELNNNQ---------- 149

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
                         I+D       GLS +K L L+  QIT     A T LT LT L L  
Sbjct: 150 --------------ITDIPASSFTGLSGMKRLTLNNNQITILSANAFTGLTALTELYLSS 195

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             IT   A        L  +E+    +T         LSSL  L LS N  +T  +    
Sbjct: 196 NTITSISANAFTGLSALTMVELQFNQITSIASNSFTGLSSLIFLGLSSN-RITSISDNAF 254

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           +GLT LVSL + +++ITS     L  +  L  LTL
Sbjct: 255 TGLTQLVSLTLFSNQITSISASALTGMPVLLQLTL 289



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 117/247 (47%), Gaps = 16/247 (6%)

Query: 6   SGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLE 61
           S  ++LT+L   + ++N ITA    AFAG+  L +L L   + T I  G     GL  L 
Sbjct: 60  SAFTSLTALVAVYLQDNQITAVPASAFAGMTTLKQLHLANNQLTSISTG--TFAGLTSLV 117

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGCP 118
           SL +   N IT   +     LT L  L+++ +++TD   S    L G+++LTL N +   
Sbjct: 118 SLYLAG-NQITTIPLNAFVDLTQLVGLELNNNQITDIPASSFTGLSGMKRLTLNNNQITI 176

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           ++A     L+AL  L YL+ N   ++      F+ + +L ++ L FN+IT        GL
Sbjct: 177 LSANAFTGLTALTEL-YLSSNT--ITSISANAFTGLSALTMVELQFNQITSIASNSFTGL 233

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS--- 235
           ++L  L L S  I        TGL  L  L L   Q+ S     L+G+  L  + L+   
Sbjct: 234 SSLIFLGLSSNRITSISDNAFTGLTQLVSLTLFSNQITSISASALTGMPVLLQLTLTGNP 293

Query: 236 FTGISDG 242
           FT +  G
Sbjct: 294 FTTLPPG 300


>gi|344309443|ref|XP_003423386.1| PREDICTED: toll-like receptor 11-like [Loxodonta africana]
          Length = 918

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 166/411 (40%), Gaps = 73/411 (17%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL- 60
           ++ L  L  L SLSF+     ++Q ++        + L L R T  H  L +L+ L  L 
Sbjct: 140 SDALEPLRFLNSLSFQGYCLNSSQNIQ--------LPLSLSRLTLRHSCLTDLQELQGLF 191

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
            SL          S   P   + +L S  +  S+V   G+  L+GLQ L  L L+G P++
Sbjct: 192 PSLVPGSSPTAISSPWPPFLEVLDL-SANMQLSRV---GVKTLRGLQ-LHSLRLDGTPLS 246

Query: 121 AA--------CLDSLS--------------ALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
           A          LDSLS              A   L  L+L R Q+   G E  S   SL+
Sbjct: 247 ALELLASGLLHLDSLSLVDTGAEKLPGNVTAYFELSTLDLGRNQIQHIGDEDLSGYHSLE 306

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-----DEGLVNLTGLCNLKCLELSDT 213
            LNL  N +       L  L  L+ LNL    +G      EGLV+     NL+ L+LS  
Sbjct: 307 HLNLHANGLHSLPTRFLSALPQLQRLNLSMNKLGPTLALPEGLVS----SNLRVLDLSHN 362

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
           ++ +      S L  LE + L    IS+ S   L GL  LK+L+L   QI    L  L+S
Sbjct: 363 ELSALPSGAFSSLPQLEELWLGGNNISNLSSEALEGLRWLKTLDLSWNQIKVLKLGWLSS 422

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           L  L  L+L G  I +     L+  + L  L                 L S  +L L   
Sbjct: 423 LPALISLNLLGTYIENFSGRLLQGPQKLSHLW----------------LGSPEILELYPP 466

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
             LT            L+SL V         + H KP + L SLTL++  V
Sbjct: 467 WPLT------------LLSLEVWAQSYIQFSVPHGKPFQFLESLTLQASYV 505


>gi|406830084|ref|ZP_11089678.1| hypothetical protein SpalD1_00552 [Schlesneria paludicola DSM
           18645]
          Length = 249

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 68/108 (62%)

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           L +LE+++L  + +SD  L+ L  LS L+ L L+   I D GL  L  LTGL  L L G 
Sbjct: 110 LKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGIADIGLGYLRPLTGLQGLHLDGT 169

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           +ITD+G  +L++  +L+ L++    ++DAGV+ + DL  L +LNL+++
Sbjct: 170 KITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLHELQILNLAES 217



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 74/136 (54%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           +NLNR + +D        +  L+ L+L  ++++DE L  L  L+ L  L L+  GI D G
Sbjct: 92  VNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGIADIG 151

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           L  L  L  L+ L L  T++  +G++HL  +++L+ + LS T +SD  +  L  L  L+ 
Sbjct: 152 LGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLHELQI 211

Query: 256 LNLDARQITDTGLAAL 271
           LNL   ++T  G  +L
Sbjct: 212 LNLAESRVTRRGFVSL 227



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 1/138 (0%)

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           +NL+    +D  +  L  L  L++L+L+   ++D GL +L  L+ L  L L    I D G
Sbjct: 92  VNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGIADIG 151

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
             YLR    L+ L + G  +TDAGVKH++ +S L +L LS N  ++D  +E++  L  L 
Sbjct: 152 LGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLS-NTLVSDAGVEVLFDLHELQ 210

Query: 352 SLNVSNSRITSAGLRHLK 369
            LN++ SR+T  G   L+
Sbjct: 211 ILNLAESRVTRRGFVSLR 228



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 78/148 (52%)

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 209
           +F     + V+NL   + TD  +  L  L +LE+L+L+   + DEGL +L  L  L+ L 
Sbjct: 82  QFPLFDRITVVNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLG 141

Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 269
           L+ T +   GL +L  LT L+ ++L  T I+D  ++ L  +S L+ L L    ++D G+ 
Sbjct: 142 LNHTGIADIGLGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVE 201

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRN 297
            L  L  L  L+L  +R+T  G   LR 
Sbjct: 202 VLFDLHELQILNLAESRVTRRGFVSLRQ 229



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 70/130 (53%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
             ++T++NL     T   + SL  L  L  L+L    +SD+G +   ++  L+ L L   
Sbjct: 86  FDRITVVNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHT 145

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
            I D  L +L+ LT L+ L+LD   I D G+ +L  + +L+ L+LS+T V  +G+  L  
Sbjct: 146 GIADIGLGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFD 205

Query: 226 LTNLESINLS 235
           L  L+ +NL+
Sbjct: 206 LHELQILNLA 215



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           L  LE+L+++  + ++D  +K L  L+ L+ L ++ + + D G+ YL+ L  L  L+L+G
Sbjct: 110 LKHLETLDLELSD-VSDEGLKSLGRLSQLRGLGLNHTGIADIGLGYLRPLTGLQGLHLDG 168

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +T A +  L ++  L  L L+   +SD G E    +  L++LNL  + +T    V L+
Sbjct: 169 TKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLHELQILNLAESRVTRRGFVSLR 228



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 5/194 (2%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           +  F  L  L+    ER  R+   + ++ G    E    +W   +T S          + 
Sbjct: 36  IPVFLALTILIPFLSER--RVARHVESMGGTFSTEYFGPEW---LTPSLRTQFPLFDRIT 90

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
            + ++  K TD  +  L  L+ L  L+LE   V+   L SL  L  L  L LN   ++D 
Sbjct: 91  VVNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGIADI 150

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           G      +  L+ L+L   +ITD  + HL+ +++L+ L L +  + D G+  L  L  L+
Sbjct: 151 GLGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLHELQ 210

Query: 207 CLELSDTQVGSSGL 220
            L L++++V   G 
Sbjct: 211 ILNLAESRVTRRGF 224



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 1/98 (1%)

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           TD     L   K+L +L++    ++D G+K +  LS L  L L+ +  + D  L  +  L
Sbjct: 100 TDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLN-HTGIADIGLGYLRPL 158

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           TGL  L++  ++IT AG++HL+ + +L+ L L +  V+
Sbjct: 159 TGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVS 196


>gi|320165161|gb|EFW42060.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 641

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 91/215 (42%)

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +T+    + + L +L YLNLN   +       F+ + +LK L LG+NE+ D       GL
Sbjct: 74  ITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGYNELADISATAFAGL 133

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
           T L +L+L S  I          L  L  L L   Q+ +      +GL+ L  +NL    
Sbjct: 134 TALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAGLSALALLNLESNQ 193

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           I+  S      L++L  L L   QIT    +A T LT L  L+LF  +IT   A      
Sbjct: 194 ITSISANAFTDLTALTLLYLQRNQITSIPTSAFTGLTALKDLELFNNQITAIAANTFSGL 253

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
             L  L +    +T         L +LT L L  N
Sbjct: 254 SALTQLYLFSNQITSIAANAFTGLPALTALALDGN 288



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 98/207 (47%), Gaps = 1/207 (0%)

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           N  SL L++  I        TGL  L  L L+   + S      +GLT L+ + L +  +
Sbjct: 63  NTTSLELNNNQITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGYNEL 122

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           +D S    AGL++L +L+L + QIT    +A  SLT LT+L L   ++T+  A       
Sbjct: 123 ADISATAFAGLTALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAGLS 182

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
            L  L +    +T        DL++LTLL L +N  +T       +GLT L  L + N++
Sbjct: 183 ALALLNLESNQITSISANAFTDLTALTLLYLQRN-QITSIPTSAFTGLTALKDLELFNNQ 241

Query: 360 ITSAGLRHLKPLKNLRSLTLESCKVTA 386
           IT+        L  L  L L S ++T+
Sbjct: 242 ITAIAANTFSGLSALTQLYLFSNQITS 268



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 113/279 (40%), Gaps = 50/279 (17%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 69
           N TSL    NN IT+    AF GL  L  L+L                           N
Sbjct: 63  NTTSLELN-NNQITSISAGAFTGLTALTYLNLNS-------------------------N 96

Query: 70  CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129
            I        +GLT LK L +  +++ D       GL  L  L+L+   +T+    + ++
Sbjct: 97  SIRSISANAFTGLTALKHLPLGYNELADISATAFAGLTALNALHLQSNQITSISASAFAS 156

Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 189
           L +L YL L+  QL++     F+ + +L +LNL  N+IT    +     T+L +L L   
Sbjct: 157 LTTLTYLRLDSNQLTNFAANVFAGLSALALLNLESNQITS---ISANAFTDLTALTL--- 210

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
                             L L   Q+ S      +GLT L+ + L    I+  +    +G
Sbjct: 211 ------------------LYLQRNQITSIPTSAFTGLTALKDLELFNNQITAIAANTFSG 252

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           LS+L  L L + QIT     A T L  LT L L G R T
Sbjct: 253 LSALTQLYLFSNQITSIAANAFTGLPALTALALDGNRFT 291


>gi|422414916|ref|ZP_16491873.1| internalin A, partial [Listeria innocua FSL J1-023]
 gi|313625062|gb|EFR94940.1| internalin A [Listeria innocua FSL J1-023]
          Length = 676

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 185/386 (47%), Gaps = 62/386 (16%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  +E LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTISQTDLDQVTTLQADRLGIKSINGVEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
                              +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L
Sbjct: 114 TPLKDLTKLVDIVMNNNQIADISPLANLTNLTGLTLFTNQITD--IDPLKNLTNLNRLEL 171

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
            G   T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N++TD  +  
Sbjct: 172 SGN--TISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVTDISV-- 224

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  LTNLE L   +  I D  +  L  L NL  L L+  Q+   G   L  LTNL +++L
Sbjct: 225 LSKLTNLERLIATNNQISD--ITPLGILINLDELSLNGNQLKDIG--TLVSLTNLTNLDL 280

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   IS+  L  L  L+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + 
Sbjct: 281 ANNQISN--LAPLTDLTKLTELKLGANQISN--ISPLAGLTALTNLELHENQLED--ISP 334

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN--LSQNCNLTDKTLELISGLTGLVS 352
           + N KNL  L +    ++D     I  +SSLT L      N  ++D  +  ++ LT +  
Sbjct: 335 ISNLKNLTYLTLYINNISD-----ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINW 387

Query: 353 LNVSNSRITSAGLRHLKPLKNLRSLT 378
           L+  N++I+      L PL NL  +T
Sbjct: 388 LSAGNNQIS-----DLTPLANLTRIT 408



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 154/348 (44%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   N       +K    L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLFTNQITDIDPLK---NLTNLNRLELSGNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KVTD  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVTDISV-----LSKLT--NLERLIATNNQI 241

Query: 125 DSLSALGSLFYLN---LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG L  L+   LN  QL D G      + +L  L+L  N+I++  L  L  LT L
Sbjct: 242 SDITPLGILINLDELSLNGNQLKDIGT--LVSLTNLTNLDLANNQISN--LAPLTDLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL + Q+    +  +S L NL  + L    ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELHENQL--EDISPISNLKNLTYLTLYINNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGNNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNPPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 44.7 bits (104), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 50/177 (28%)

Query: 219 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 274
           G++ ++G   L NL  IN S   ++D  +  L  L+ L  + ++  QI D + LA LT+L
Sbjct: 87  GIKSINGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNNQIADISPLANLTNL 144

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           TGLT   LF  +ITD     L+N  NL  LE+ G  ++D                     
Sbjct: 145 TGLT---LFTNQITDIDP--LKNLTNLNRLELSGNTISD--------------------- 178

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDI 389
                    IS L+GL SL     +  S G  +  LKPL NL   TLE   +++N +
Sbjct: 179 ---------ISALSGLTSL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKV 219


>gi|356551924|ref|XP_003544322.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
          Length = 652

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 169/342 (49%), Gaps = 28/342 (8%)

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
           C C+ ++D+     LT+          V    IA    L++L L   +G  +T   +  +
Sbjct: 125 CTCLVEADLSNRPDLTD----------VAAKAIAEAVNLERLCLGRCKG--ITDLGIGCI 172

Query: 128 SALGS-LFYLNLNRC-QLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           +   S L ++ L  C +++D G    + K   ++ L+L +  IT++CL H+  L +LE L
Sbjct: 173 AVRCSKLRHVGLRWCIRVTDFGAGLIAIKCKEIRSLDLSYLPITEKCLNHILQLEHLEDL 232

Query: 185 NLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHL-SGLTNLESINLSFTGIS 240
            L+ C GI D GL  L   C ++K L LS  Q +G  G+  L SG  NLE + LS + I 
Sbjct: 233 ILEHCLGIEDHGLATLQASCKSMKMLNLSKCQNIGHIGIASLTSGSQNLEKLILSSSVIV 292

Query: 241 DGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGAR-ITDSGAAYL-R 296
              L K L   S L+S+ LD+   T +GL A+ +L   L  L+L     +TD    +L +
Sbjct: 293 TTDLAKCLQSFSRLQSVKLDSCLGTKSGLKAIGNLGASLKELNLSKCVGVTDENLPFLVQ 352

Query: 297 NFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDKTLELISGLTGLV-SL 353
             K+L  L+I C   +T A +  + + S L L +L  ++C+L  +   L  G   L+  L
Sbjct: 353 PHKDLEKLDITCCHTITHASISSLTN-SCLRLTSLRMESCSLVSREGFLFIGRCQLLEEL 411

Query: 354 NVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQS 394
           +V+++ I   GL+ +     L SL L  C  +T N +K + S
Sbjct: 412 DVTDTEIDDQGLQSISRCTKLSSLKLGICSMITDNGLKHIAS 453



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 182/387 (47%), Gaps = 38/387 (9%)

Query: 21  AITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMK-LESLNIKWCNCITDSDMKP 78
            IT + +     L +L  L LE C  I   GL  L+   K ++ LN+  C  I    +  
Sbjct: 214 PITEKCLNHILQLEHLEDLILEHCLGIEDHGLATLQASCKSMKMLNLSKCQNIGHIGIAS 273

Query: 79  L-SGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALG-SLFY 135
           L SG  NL+ L +S S +  + +A  L+   +L  + L+ C  T + L ++  LG SL  
Sbjct: 274 LTSGSQNLEKLILSSSVIVTTDLAKCLQSFSRLQSVKLDSCLGTKSGLKAIGNLGASLKE 333

Query: 136 LNLNRCQ-LSDDGC----------EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           LNL++C  ++D+            EK        + +   + +T+ CL        L SL
Sbjct: 334 LNLSKCVGVTDENLPFLVQPHKDLEKLDITCCHTITHASISSLTNSCL-------RLTSL 386

Query: 185 NLDSCG-IGDEGLVNLTGLCNL-KCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISD 241
            ++SC  +  EG +   G C L + L+++DT++   GL+ +S  T L S+ L     I+D
Sbjct: 387 RMESCSLVSREGFL-FIGRCQLLEELDVTDTEIDDQGLQSISRCTKLSSLKLGICSMITD 445

Query: 242 GSLRKLAG-LSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL----FGARITDSGAAYL 295
             L+ +A   S LK L+L  + +ITD G+ A+    G   L++    + +  TD+   +L
Sbjct: 446 NGLKHIASSCSKLKQLDLYRSSRITDEGIVAIA--LGCPSLEVVNIAYNSNTTDTSLEFL 503

Query: 296 RNFKNLRSLEICG-GGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVS 352
              + LR+LEI G   ++  G+ +I      L +L++ +   + D   ++L      L  
Sbjct: 504 SKCQKLRTLEIRGCPRISPKGLSNIVARCRYLEMLDIKKCHKINDTGMIQLAQHSQNLKH 563

Query: 353 LNVSNSRITSAGLRHLKPLKNLRSLTL 379
           + +S   +T  GL  L  +  L+ +++
Sbjct: 564 IKLSYCSVTDVGLIALASISCLQHISI 590



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 188/411 (45%), Gaps = 49/411 (11%)

Query: 22  ITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           +T    KA A  +NL +L L RC   T +  G + ++   KL  + ++WC  +TD     
Sbjct: 139 LTDVAAKAIAEAVNLERLCLGRCKGITDLGIGCIAVR-CSKLRHVGLRWCIRVTDFGAGL 197

Query: 79  LS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSA-LGSLFY 135
           ++     ++SL +S   +T+  + ++  L+ L  L LE C  +    L +L A   S+  
Sbjct: 198 IAIKCKEIRSLDLSYLPITEKCLNHILQLEHLEDLILEHCLGIEDHGLATLQASCKSMKM 257

Query: 136 LNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-- 189
           LNL++CQ +   G    +  GS  +  L  +    +T +    L+  + L+S+ LDSC  
Sbjct: 258 LNLSKCQNIGHIGIASLTS-GSQNLEKLILSSSVIVTTDLAKCLQSFSRLQSVKLDSCLG 316

Query: 190 ------GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDG 242
                  IG+ G  +L  L   KC+ ++D  +      H     +LE ++++    I+  
Sbjct: 317 TKSGLKAIGNLG-ASLKELNLSKCVGVTDENLPFLVQPH----KDLEKLDITCCHTITHA 371

Query: 243 SLRKLAG----LSSLK--SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
           S+  L      L+SL+  S +L +R+    G   +     L  LD+    I D G   + 
Sbjct: 372 SISSLTNSCLRLTSLRMESCSLVSRE----GFLFIGRCQLLEELDVTDTEIDDQGLQSIS 427

Query: 297 NFKNLRSLE--ICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVS 352
               L SL+  IC   +TD G+KHI    S L  L+L ++  +TD+ +  I+ G   L  
Sbjct: 428 RCTKLSSLKLGIC-SMITDNGLKHIASSCSKLKQLDLYRSSRITDEGIVAIALGCPSLEV 486

Query: 353 LNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
           +N++ NS  T   L  L   + LR+L +  C        R+  + L N+V+
Sbjct: 487 VNIAYNSNTTDTSLEFLSKCQKLRTLEIRGC-------PRISPKGLSNIVA 530



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 145/294 (49%), Gaps = 26/294 (8%)

Query: 23  TAQGMKAFAGL-INLVKLDLERCTRIHGGLVNLKGLMK----LESLNIKWCNCITDSDMK 77
           T  G+KA   L  +L +L+L +C  +     NL  L++    LE L+I  C+ IT +   
Sbjct: 317 TKSGLKAIGNLGASLKELNLSKCVGVTDE--NLPFLVQPHKDLEKLDITCCHTITHAS-- 372

Query: 78  PLSGLTN----LKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
            +S LTN    L SL++ SCS V+  G  ++   Q L  L++    +    L S+S    
Sbjct: 373 -ISSLTNSCLRLTSLRMESCSLVSREGFLFIGRCQLLEELDVTDTEIDDQGLQSISRCTK 431

Query: 133 LFYLNLNRCQL-SDDGCEKF-SKIGSLKVLNLGFN-EITDECLVHLK-GLTNLESLNLD- 187
           L  L L  C + +D+G +   S    LK L+L  +  ITDE +V +  G  +LE +N+  
Sbjct: 432 LSSLKLGICSMITDNGLKHIASSCSKLKQLDLYRSSRITDEGIVAIALGCPSLEVVNIAY 491

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN-LESINLS-FTGISDGSL 244
           +    D  L  L+    L+ LE+    ++   GL ++      LE +++     I+D  +
Sbjct: 492 NSNTTDTSLEFLSKCQKLRTLEIRGCPRISPKGLSNIVARCRYLEMLDIKKCHKINDTGM 551

Query: 245 RKLAGLSS-LKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSG-AAYL 295
            +LA  S  LK + L    +TD GL AL S++ L H+ +F    +T +G AA+L
Sbjct: 552 IQLAQHSQNLKHIKLSYCSVTDVGLIALASISCLQHISIFHVEGLTSNGLAAFL 605



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 121/283 (42%), Gaps = 65/283 (22%)

Query: 4   NLSGLSN----LTSLSFRRNNAITAQGMKAFAGLINLVK-LDLERCTRIHGGLVNLKGLM 58
           ++S L+N    LTSL     + ++ +G   F G   L++ LD+        GL ++    
Sbjct: 372 SISSLTNSCLRLTSLRMESCSLVSREGF-LFIGRCQLLEELDVTDTEIDDQGLQSISRCT 430

Query: 59  KLESLNIKWCNCITDSDMKPL-SGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEG 116
           KL SL +  C+ ITD+ +K + S  + LK L +   S++TD GI  +            G
Sbjct: 431 KLSSLKLGICSMITDNGLKHIASSCSKLKQLDLYRSSRITDEGIVAIA----------LG 480

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHL 175
           CP                                     SL+V+N+ +N   TD  L  L
Sbjct: 481 CP-------------------------------------SLEVVNIAYNSNTTDTSLEFL 503

Query: 176 KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT----QVGSSGLRHLSGLT-NL 229
                L +L +  C  I  +GL N+   C    LE+ D     ++  +G+  L+  + NL
Sbjct: 504 SKCQKLRTLEIRGCPRISPKGLSNIVARCRY--LEMLDIKKCHKINDTGMIQLAQHSQNL 561

Query: 230 ESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL 271
           + I LS+  ++D  L  LA +S L+ +++     +T  GLAA 
Sbjct: 562 KHIKLSYCSVTDVGLIALASISCLQHISIFHVEGLTSNGLAAF 604


>gi|290892592|ref|ZP_06555585.1| InlE protein [Listeria monocytogenes FSL J2-071]
 gi|404406718|ref|YP_006689433.1| internalin E [Listeria monocytogenes SLCC2376]
 gi|290557901|gb|EFD91422.1| InlE protein [Listeria monocytogenes FSL J2-071]
 gi|404240867|emb|CBY62267.1| internalin E (LPXTG motif) [Listeria monocytogenes SLCC2376]
          Length = 499

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 108/216 (50%), Gaps = 38/216 (17%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +  LTNL  L+++ +++TD  ++ L  L K+T L L G P     L  +SA+  L     
Sbjct: 92  MQYLTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSAIAGL----- 139

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
                            SLK+L+L + +ITD  +  L GLTNL+ LNLD   I D  +  
Sbjct: 140 ----------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISP 179

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L  L NL+ L L  TQV  S L  L+ L+ L  +N   + +SD  +  LA LSSL  + L
Sbjct: 180 LAALTNLQTLSLGYTQV--SDLTPLANLSKLTILNAENSKVSD--ISPLASLSSLAEVYL 235

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
              QI+D  ++ L ++  L+ ++L    IT+    Y
Sbjct: 236 RENQISD--VSPLANIPNLSIIELTDQIITNQPVYY 269



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 24/161 (14%)

Query: 177 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 227
           G+T +E +    NL    + D  + +++ L NL  +    T++G SG     +  ++GL 
Sbjct: 85  GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSAIAGLK 140

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           +L+ ++L +T I+D  +  LAGL++L+ LNLD  QITD  ++ L +LT L  L L   ++
Sbjct: 141 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALTNLQTLSLGYTQV 196

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
           +D     L    NL  L I      ++ V  I  L+SL+ L
Sbjct: 197 SD-----LTPLANLSKLTILNAE--NSKVSDISPLASLSSL 230



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 43/236 (18%)

Query: 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
            NEI  + +V      N+++L L+   + DE  V  T L ++   +LS    G + +  +
Sbjct: 42  INEIFTDPVVA----DNVKTL-LEKADVTDE--VTQTDLDSIT--QLSAKSAGITTIEGM 92

Query: 224 SGLTNLESINLSFTGISDGS--------------------LRKLAGLSSLKSLNLDARQI 263
             LTNL  + L+   I+D S                    +  +AGL SLK L+L    I
Sbjct: 93  QYLTNLSELELTDNQITDVSPLANLTKITELGLSGNPLKDVSAIAGLKSLKMLHLIYTDI 152

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
           TD  + +L  LT L  L+L   +ITD     L    NL++L +    ++D  +  + +LS
Sbjct: 153 TD--VTSLAGLTNLQELNLDINQITDISP--LAALTNLQTLSLGYTQVSD--LTPLANLS 206

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
            LT+LN ++N  ++D     IS L  L SL  +   +    +  + PL N+ +L++
Sbjct: 207 KLTILN-AENSKVSD-----ISPLASLSSL--AEVYLRENQISDVSPLANIPNLSI 254



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 27/141 (19%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ----- 107
           + GL  L+ L++ + +    +D+  L+GLTNL+ L +  +++TD S +A L  LQ     
Sbjct: 136 IAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALTNLQTLSLG 192

Query: 108 --------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
                         KLT+LN E   V  + +  L++L SL  + L   Q+SD      + 
Sbjct: 193 YTQVSDLTPLANLSKLTILNAENSKV--SDISPLASLSSLAEVYLRENQISD--VSPLAN 248

Query: 154 IGSLKVLNLGFNEITDECLVH 174
           I +L ++ L    IT++ + +
Sbjct: 249 IPNLSIIELTDQIITNQPVYY 269


>gi|451927274|gb|AGF85152.1| hypothetical protein glt_00343 [Moumouvirus goulette]
          Length = 518

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 189/422 (44%), Gaps = 80/422 (18%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +NLS + N+  L+    N I+   ++  +   ++ +L+L++C     G   LK + K+  
Sbjct: 59  KNLSIIKNVRYLNLSHTN-ISDNHLELLS---DVYELNLKKCNITGSGFKYLKNIKKI-- 112

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL------------------- 103
            NI WC  + +++M+    L N++ + +S S + D GI YL                   
Sbjct: 113 -NISWCRKLINNNMQ---YLCNIQWINLSRSNINDEGIKYLILGEMNDNLIPLNNIKYIN 168

Query: 104 -----------KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDG--CE 149
                      K L  +  + +  CP V A+CL+ L+ + +L      R  L  D   CE
Sbjct: 169 LSNTNITNNSIKILSNIPTIKINYCPHVNASCLEYLTTINNLSI----RTTLDRDINLCE 224

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK--- 206
               + ++K L L  + +T +   HLK L NL+ L+  +  I  + +  L  L  L    
Sbjct: 225 NLKYLKNIKTLKLDTSYLTSQ---HLKELKNLKILDAQNSNIEQKDIEFLDKLEYLHMRF 281

Query: 207 --CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQ 262
             C++  D+          +   NL  + L +   I++  L+    L  LK +NL    +
Sbjct: 282 NDCIDYFDS----------TKFNNLRVLKLPYCVAINNDCLK---NLDQLKKINLKRCLE 328

Query: 263 ITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           ITD+GL  L ++     +++ G   +TD G +YL N K L +++ C  G+T+ G+K++K+
Sbjct: 329 ITDSGLKYLKNVPD---INISGCLNVTDEGLSYLENVKKL-NIKHC-YGITNEGLKYLKN 383

Query: 322 LSSLTL-LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
           +  + +  +   +  LT   +     +     +  SN  IT  GL +   L+N+  L L+
Sbjct: 384 MKKIKIGYHNEHDIILTRYEMCTTGEIEYWNIVEKSNQNITDLGLSY---LQNISFLELK 440

Query: 381 SC 382
            C
Sbjct: 441 KC 442



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 132/277 (47%), Gaps = 36/277 (12%)

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           + +LS + ++ YLNL+   +SD+  E  S +     LNL    IT     +LK   N++ 
Sbjct: 58  IKNLSIIKNVRYLNLSHTNISDNHLELLSDVYE---LNLKKCNITGSGFKYLK---NIKK 111

Query: 184 LNLDSCGIGDEGLV--NLTGLCNLKCLELSDTQVGSSGLRH---------LSGLTNLESI 232
           +N+  C      L+  N+  LCN++ + LS + +   G+++         L  L N++ I
Sbjct: 112 INISWC----RKLINNNMQYLCNIQWINLSRSNINDEGIKYLILGEMNDNLIPLNNIKYI 167

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
           NLS T I++ S++ L+ + ++K +N     +  + L  LT++  L+        I  +  
Sbjct: 168 NLSNTNITNNSIKILSNIPTIK-INY-CPHVNASCLEYLTTINNLSIRTTLDRDI--NLC 223

Query: 293 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL-V 351
             L+  KN+++L++    LT    +H+K+L +L +L+ +QN N+  K +E +  L  L +
Sbjct: 224 ENLKYLKNIKTLKLDTSYLTS---QHLKELKNLKILD-AQNSNIEQKDIEFLDKLEYLHM 279

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
             N       S          NLR L L  C    ND
Sbjct: 280 RFNDCIDYFDSTKFN------NLRVLKLPYCVAINND 310



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 121/268 (45%), Gaps = 35/268 (13%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +++  L  L  L  R N+ I       F    NL  L L  C  I+     LK L +L+ 
Sbjct: 266 KDIEFLDKLEYLHMRFNDCIDYFDSTKFN---NLRVLKLPYCVAINNDC--LKNLDQLKK 320

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 120
           +N+K C  ITDS +K L    N+  + IS C  VTD G++YL+ ++K   LN++ C  +T
Sbjct: 321 INLKRCLEITDSGLKYLK---NVPDINISGCLNVTDEGLSYLENVKK---LNIKHCYGIT 374

Query: 121 AACLDSLSALGSLF--YLN-----LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
              L  L  +  +   Y N     L R ++   G     +I    ++      ITD  L 
Sbjct: 375 NEGLKYLKNMKKIKIGYHNEHDIILTRYEMCTTG-----EIEYWNIVEKSNQNITDLGLS 429

Query: 174 HLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
           +L+ ++ LE   L  C  I D GLV L  + NL+ L+  +   GS     LS L N + I
Sbjct: 430 YLQNISFLE---LKKCNNITDAGLVRLNNVSNLE-LKYCENIKGS----FLSYLKNTK-I 480

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDA 260
            +  T I +  LR +  +  ++    D 
Sbjct: 481 KIFGTNIKNEYLRNIPEIKIMEKYVFDT 508



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 119/300 (39%), Gaps = 96/300 (32%)

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           LD +      F  NL R  +     +  S I +++ LNL    I+D    HL+ L+++  
Sbjct: 37  LDMIKNYSKSFAFNLKRNNIP---IKNLSIIKNVRYLNLSHTNISDN---HLELLSDVYE 90

Query: 184 LNLDSCGIGDEGLV-------------------NLTGLCNLKCLELSDTQVGSSGLRHLS 224
           LNL  C I   G                     N+  LCN++ + LS + +   G+++L 
Sbjct: 91  LNLKKCNITGSGFKYLKNIKKINISWCRKLINNNMQYLCNIQWINLSRSNINDEGIKYLI 150

Query: 225 ---------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
                     L N++ INLS T I++ S++ L+ + ++K +N     +  + L  LT++ 
Sbjct: 151 LGEMNDNLIPLNNIKYINLSNTNITNNSIKILSNIPTIK-INY-CPHVNASCLEYLTTIN 208

Query: 276 GL---THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
            L   T LD                    R + +C        +K++K++ +L L     
Sbjct: 209 NLSIRTTLD--------------------RDINLC------ENLKYLKNIKTLKL----- 237

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
                                    S +TS   +HLK LKNL+ L  ++  +   DI+ L
Sbjct: 238 -----------------------DTSYLTS---QHLKELKNLKILDAQNSNIEQKDIEFL 271



 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 99/204 (48%), Gaps = 38/204 (18%)

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
           +++LS + N+  +NLS T ISD  L     LS +  LNL    IT +G   L ++  +  
Sbjct: 58  IKNLSIIKNVRYLNLSHTNISDNHLE---LLSDVYELNLKKCNITGSGFKYLKNIKKIN- 113

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH---------IKDLSSLTLLNL 330
              +  ++ ++   YL    N++ + +    + D G+K+         +  L+++  +NL
Sbjct: 114 -ISWCRKLINNNMQYLC---NIQWINLSRSNINDEGIKYLILGEMNDNLIPLNNIKYINL 169

Query: 331 SQNCNLTDKTLELISG-------------------LTGLVSLNVSNSRITSAGL-RHLKP 370
           S N N+T+ +++++S                    LT + +L++  +      L  +LK 
Sbjct: 170 S-NTNITNNSIKILSNIPTIKINYCPHVNASCLEYLTTINNLSIRTTLDRDINLCENLKY 228

Query: 371 LKNLRSLTLESCKVTANDIKRLQS 394
           LKN+++L L++  +T+  +K L++
Sbjct: 229 LKNIKTLKLDTSYLTSQHLKELKN 252


>gi|46445898|ref|YP_007263.1| hypothetical protein pc0264 [Candidatus Protochlamydia amoebophila
            UWE25]
 gi|46399539|emb|CAF22988.1| hypothetical protein pc0264 [Candidatus Protochlamydia amoebophila
            UWE25]
          Length = 1805

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 101/355 (28%), Positives = 178/355 (50%), Gaps = 49/355 (13%)

Query: 79   LSGLTNLKSLQISCSKVTDSG---IAY-LKGLQKLTLLNLEGCPVT----AACLDSLSAL 130
            L+  T LKSL +  ++++D G   IA  L     L  L L G  ++     A   SL++ 
Sbjct: 1364 LASNTTLKSLDLDRNQISDKGAEAIAQALASNAALETLWLNGNQISDKGAEAIAQSLASN 1423

Query: 131  GSLFYLNLNRCQLSDDGCEKFSKIGS----LKVLNLGFNEITDECL----VHLKGLTNLE 182
             +L+ L+LN  Q+SD G E F++  +    L  L+L  N+I+D+ +      L   T++ 
Sbjct: 1424 AALWKLSLNGNQISDQGMEAFAQALASNTILMDLSLNGNQISDQGMKAFAQALASNTSIR 1483

Query: 183  SLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINL 234
             L+L+   I D+ +      L    ++  L L+  Q+   G+    + L+  T L ++ L
Sbjct: 1484 VLSLNENQISDKEMEAFAQALASNTSIGVLSLNGNQISDKGMEAFAQALASNTTLRTLRL 1543

Query: 235  SFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGAR 286
                ISD  +    + LA  +S+  L+L+  QI+D G+     AL S T L+ L L   +
Sbjct: 1544 DNNQISDKGMEAFAQALASNTSIGVLSLNGNQISDKGIVALAQALASNTILSELSLNENQ 1603

Query: 287  ITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLN-LSQNCN-LTDK 339
            I+D G    A  L +   LR+L +    ++D G++   + L+S T+L+ LS N N ++D+
Sbjct: 1604 ISDQGMEAFAQALASNTALRALRLDNNQISDKGMEAFAQALASNTILSELSLNGNQISDQ 1663

Query: 340  TLE-----LISGLTGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLESCKVT 385
             +E     L S +T L +L + N++I+  G+    + L     LR+L L++ +++
Sbjct: 1664 GMEAFAQALASNIT-LRALRLDNNQISDQGMEAFAQTLASNTTLRALRLDNNQIS 1717



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 78/275 (28%), Positives = 139/275 (50%), Gaps = 35/275 (12%)

Query: 126  SLSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITD---ECLVH-LKG 177
            SL++  +L  L+L+R Q+SD G E  ++      +L+ L L  N+I+D   E +   L  
Sbjct: 1363 SLASNTTLKSLDLDRNQISDKGAEAIAQALASNAALETLWLNGNQISDKGAEAIAQSLAS 1422

Query: 178  LTNLESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLR----HLSGLTNL 229
               L  L+L+   I D+G+      L     L  L L+  Q+   G++     L+  T++
Sbjct: 1423 NAALWKLSLNGNQISDQGMEAFAQALASNTILMDLSLNGNQISDQGMKAFAQALASNTSI 1482

Query: 230  ESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLD 281
              ++L+   ISD  +    + LA  +S+  L+L+  QI+D G+     AL S T L  L 
Sbjct: 1483 RVLSLNENQISDKEMEAFAQALASNTSIGVLSLNGNQISDKGMEAFAQALASNTTLRTLR 1542

Query: 282  LFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLN-LSQNCN 335
            L   +I+D G    A  L +  ++  L + G  ++D G+  + + L+S T+L+ LS N N
Sbjct: 1543 LDNNQISDKGMEAFAQALASNTSIGVLSLNGNQISDKGIVALAQALASNTILSELSLNEN 1602

Query: 336  -LTDKTLE----LISGLTGLVSLNVSNSRITSAGL 365
             ++D+ +E     ++  T L +L + N++I+  G+
Sbjct: 1603 QISDQGMEAFAQALASNTALRALRLDNNQISDKGM 1637



 Score = 51.2 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 128/302 (42%), Gaps = 82/302 (27%)

Query: 9    SNLTSLSFR-RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
            SN T  + R  NN I+ +GM+AFA         L   T I  G+++L G           
Sbjct: 1534 SNTTLRTLRLDNNQISDKGMEAFAQA-------LASNTSI--GVLSLNG----------- 1573

Query: 68   CNCITDSDM----KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
             N I+D  +    + L+  T L  L ++ ++++D G+                     A 
Sbjct: 1574 -NQISDKGIVALAQALASNTILSELSLNENQISDQGM--------------------EAF 1612

Query: 124  LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS----LKVLNLGFNEITDECL----VHL 175
              +L++  +L  L L+  Q+SD G E F++  +    L  L+L  N+I+D+ +      L
Sbjct: 1613 AQALASNTALRALRLDNNQISDKGMEAFAQALASNTILSELSLNGNQISDQGMEAFAQAL 1672

Query: 176  KGLTNLESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
                 L +L LD+  I D+G+      L     L+ L L + Q+   G+   +       
Sbjct: 1673 ASNITLRALRLDNNQISDQGMEAFAQTLASNTTLRALRLDNNQISDKGMEAFA------- 1725

Query: 232  INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARI 287
                         + +A  +S++ L+L+  QI+D G+ A    L S T L  L L G +I
Sbjct: 1726 -------------QTMASNTSIRVLSLNGNQISDQGMKAFAQTLVSNTILMDLSLNGNQI 1772

Query: 288  TD 289
            +D
Sbjct: 1773 SD 1774



 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 14/119 (11%)

Query: 231  SINLSFTGISDGSLR----KLAGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDL 282
            S+NLS   ISD         LA  ++LKSL+LD  QI+D G      AL S   L  L L
Sbjct: 1344 SVNLSNQKISDRGAEVLAHSLASNTTLKSLDLDRNQISDKGAEAIAQALASNAALETLWL 1403

Query: 283  FGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHIKD--LSSLTLLNLSQNCN 335
             G +I+D G    A  L +   L  L + G  ++D G++       S+  L++LS N N
Sbjct: 1404 NGNQISDKGAEAIAQSLASNAALWKLSLNGNQISDQGMEAFAQALASNTILMDLSLNGN 1462



 Score = 38.9 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 30/182 (16%)

Query: 1    MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
            + + L+  + L+ LS   N  I+ QGM+AFA    L      R  R+    ++ KG+   
Sbjct: 1584 LAQALASNTILSELSLNENQ-ISDQGMEAFAQA--LASNTALRALRLDNNQISDKGM--- 1637

Query: 61   ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQK---LTLLNLEG 116
                        ++  + L+  T L  L ++ ++++D G+ A+ + L     L  L L+ 
Sbjct: 1638 ------------EAFAQALASNTILSELSLNGNQISDQGMEAFAQALASNITLRALRLDN 1685

Query: 117  CPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEIT 168
              ++     A   +L++  +L  L L+  Q+SD G E F++      S++VL+L  N+I+
Sbjct: 1686 NQISDQGMEAFAQTLASNTTLRALRLDNNQISDKGMEAFAQTMASNTSIRVLSLNGNQIS 1745

Query: 169  DE 170
            D+
Sbjct: 1746 DQ 1747


>gi|83629969|gb|ABC26646.1| internalin E [Listeria monocytogenes]
 gi|85679293|gb|ABC72062.1| InlE [Listeria monocytogenes]
          Length = 498

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 118/251 (47%), Gaps = 44/251 (17%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +  LTNL  L+++ +++TD  ++ L  L K+T L L G P     L  +SAL  L     
Sbjct: 91  MQYLTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL----- 138

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
                            SLK+L+L + +ITD  +  L GLTNL+ LNLD   I D  +  
Sbjct: 139 ----------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISP 178

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L  L NL+ L L  TQV  S L  L+ L+ L  +N     +SD  +  LA LSSL  + L
Sbjct: 179 LAALTNLQTLSLGYTQV--SDLTPLANLSKLTILNAENCKVSD--ISPLASLSSLTEVYL 234

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLT 312
              QI+D  ++ L ++  L+ ++L    IT+    Y          K L S  I    ++
Sbjct: 235 RENQISD--VSPLANIPNLSIIELTDQIITNQPVYYQNKIIVPNVIKGLSSELIAPDTIS 292

Query: 313 DAGVKHIKDLS 323
           D G     DL+
Sbjct: 293 DNGAYTSPDLT 303



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 51/212 (24%)

Query: 177 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 227
           G+T +E +    NL    + D  + +++ L NL  +    T++G SG     +  L+GL 
Sbjct: 84  GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 139

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           +L+ ++L +T I+D  +  LAGL++L+ LNLD  QITD  ++ L +LT L  L L   ++
Sbjct: 140 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALTNLQTLSLGYTQV 195

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           +D                          +  + +LS LT+LN ++NC ++D     IS L
Sbjct: 196 SD--------------------------LTPLANLSKLTILN-AENCKVSD-----ISPL 223

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             L SL  +   +    +  + PL N+ +L++
Sbjct: 224 ASLSSL--TEVYLRENQISDVSPLANIPNLSI 253



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 27/141 (19%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ----- 107
           L GL  L+ L++ + +    +D+  L+GLTNL+ L +  +++TD S +A L  LQ     
Sbjct: 135 LAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALTNLQTLSLG 191

Query: 108 --------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
                         KLT+LN E C V  + +  L++L SL  + L   Q+SD      + 
Sbjct: 192 YTQVSDLTPLANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLAN 247

Query: 154 IGSLKVLNLGFNEITDECLVH 174
           I +L ++ L    IT++ + +
Sbjct: 248 IPNLSIIELTDQIITNQPVYY 268


>gi|171910953|ref|ZP_02926423.1| probable G protein-coupled receptor LGR4 [Verrucomicrobium spinosum
           DSM 4136]
          Length = 400

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 16/244 (6%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLE 115
           L K+ESLNI    C +D  + PL  L  LK+L+ + + K++D+G+  L GL +L   +  
Sbjct: 147 LSKIESLNIIATKC-SDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEAFSFV 205

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEITDEC 171
           G  +            +L  ++     + D+G    C KF    +L+ ++L   +  D  
Sbjct: 206 GTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFP---NLESISLAHAKCGDAG 262

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
           +  L  LT L+ L L S       LV++  + +L+ L+L D      G+  + G+T L  
Sbjct: 263 VAQLPKLTKLKGLELGSKNATPGSLVHVAKM-SLEYLQLGDGLDAPEGIAAIKGMTTLRR 321

Query: 232 INLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           + L+    + D  L+ +AG+  L+SL L++ ++TD  L  L S + L  L     RI + 
Sbjct: 322 LTLTNAKSLGDADLQAVAGIKGLESLELNSVELTDERLPLLKSFSHLKEL-----RIVNR 376

Query: 291 GAAY 294
              Y
Sbjct: 377 PKGY 380



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 5/224 (2%)

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESI 232
           H+  L+ +ESLN+ +    D+ +  L  L  LK L+ ++  ++  +GL  L+GL  LE+ 
Sbjct: 143 HVGQLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEAF 202

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSG 291
           +   TG+   +  K  G ++L  ++     I D GL  L      L  + L  A+  D+G
Sbjct: 203 SFVGTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFPNLESISLAHAKCGDAG 262

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
            A L     L+ LE+     T   + H+  + SL  L L    +  +  +  I G+T L 
Sbjct: 263 VAQLPKLTKLKGLELGSKNATPGSLVHVAKM-SLEYLQLGDGLDAPE-GIAAIKGMTTLR 320

Query: 352 SLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
            L ++N++ +  A L+ +  +K L SL L S ++T   +  L+S
Sbjct: 321 RLTLTNAKSLGDADLQAVAGIKGLESLELNSVELTDERLPLLKS 364



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 27/264 (10%)

Query: 118 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLK 176
           P  AA  + +  L  +  LN+   + SDD      K+ +LK L    N +++D  L  L 
Sbjct: 135 PYDAAFFEHVGQLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLA 194

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLS 235
           GL  LE+ +    G+         G   L  +    + +   GL  L +   NLESI+L+
Sbjct: 195 GLNQLEAFSFVGTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFPNLESISLA 254

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
                D  + +L  L+ LK L L ++  T   L  +  ++                    
Sbjct: 255 HAKCGDAGVAQLPKLTKLKGLELGSKNATPGSLVHVAKMS-------------------- 294

Query: 296 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 355
                L  L++  G     G+  IK +++L  L L+   +L D  L+ ++G+ GL SL +
Sbjct: 295 -----LEYLQLGDGLDAPEGIAAIKGMTTLRRLTLTNAKSLGDADLQAVAGIKGLESLEL 349

Query: 356 SNSRITSAGLRHLKPLKNLRSLTL 379
           ++  +T   L  LK   +L+ L +
Sbjct: 350 NSVELTDERLPLLKSFSHLKELRI 373


>gi|85679295|gb|ABC72063.1| InlE [Listeria monocytogenes]
          Length = 498

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 108/216 (50%), Gaps = 38/216 (17%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +  LTNL  L+++ +++TD  ++ L  L K+T L L G P     L  +SA+  L     
Sbjct: 91  MQYLTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSAIAGL----- 138

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
                            SLK+L+L + +ITD  +  L GLTNL+ LNLD   I D  +  
Sbjct: 139 ----------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISP 178

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L  L NL+ L L  TQV  S L  L+ L+ L  +N   + +SD  +  LA LSSL  + L
Sbjct: 179 LAALTNLQTLSLGYTQV--SDLTPLANLSKLTILNAENSKVSD--ISPLASLSSLAEVYL 234

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
              QI+D  ++ L ++  L+ ++L    IT+    Y
Sbjct: 235 RENQISD--VSPLANIPNLSIIELTDQIITNQPVYY 268



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 24/161 (14%)

Query: 177 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 227
           G+T +E +    NL    + D  + +++ L NL  +    T++G SG     +  ++GL 
Sbjct: 84  GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSAIAGLK 139

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           +L+ ++L +T I+D  +  LAGL++L+ LNLD  QITD  ++ L +LT L  L L   ++
Sbjct: 140 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALTNLQTLSLGYTQV 195

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328
           +D     L    NL  L I      ++ V  I  L+SL+ L
Sbjct: 196 SD-----LTPLANLSKLTILNAE--NSKVSDISPLASLSSL 229



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 43/236 (18%)

Query: 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
            NEI  + +V      N+++L L+   + DE  V  T L ++   +LS    G + +  +
Sbjct: 41  INEIFTDPVVA----DNVKTL-LEKADVTDE--VTQTDLDSIT--QLSAKSAGITTIEGM 91

Query: 224 SGLTNLESINLSFTGISDGS--------------------LRKLAGLSSLKSLNLDARQI 263
             LTNL  + L+   I+D S                    +  +AGL SLK L+L    I
Sbjct: 92  QYLTNLSELELTDNQITDVSPLANLTKITELGLSGNPLKDVSAIAGLKSLKMLHLIYTDI 151

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
           TD  + +L  LT L  L+L   +ITD     L    NL++L +    ++D  +  + +LS
Sbjct: 152 TD--VTSLAGLTNLQELNLDINQITDISP--LAALTNLQTLSLGYTQVSD--LTPLANLS 205

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
            LT+LN ++N  ++D     IS L  L SL  +   +    +  + PL N+ +L++
Sbjct: 206 KLTILN-AENSKVSD-----ISPLASLSSL--AEVYLRENQISDVSPLANIPNLSI 253



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 27/141 (19%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ----- 107
           + GL  L+ L++ + +    +D+  L+GLTNL+ L +  +++TD S +A L  LQ     
Sbjct: 135 IAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALTNLQTLSLG 191

Query: 108 --------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
                         KLT+LN E   V  + +  L++L SL  + L   Q+SD      + 
Sbjct: 192 YTQVSDLTPLANLSKLTILNAENSKV--SDISPLASLSSLAEVYLRENQISD--VSPLAN 247

Query: 154 IGSLKVLNLGFNEITDECLVH 174
           I +L ++ L    IT++ + +
Sbjct: 248 IPNLSIIELTDQIITNQPVYY 268


>gi|413916550|gb|AFW56482.1| hypothetical protein ZEAMMB73_356315 [Zea mays]
          Length = 660

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 128/444 (28%), Positives = 194/444 (43%), Gaps = 86/444 (19%)

Query: 9   SNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLERCTRI-------------------- 47
           S L  L   +  A+T  G+ K   G   L KL L+ C  I                    
Sbjct: 156 SELRDLRLDKCLAVTDMGLAKVAVGCPKLEKLSLKWCREISDIGIDLLAKKCPELRSLNI 215

Query: 48  ------HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSG 99
                 +G L ++  L +LE L +  C+ I D  ++ LS G  +L+S+ +S C  VT  G
Sbjct: 216 SYLKVGNGSLGSISSLERLEELAMVCCSGIDDEGLELLSKGSDSLQSVDVSRCDHVTSEG 275

Query: 100 IAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC------------QL 143
           +A L      LQKL           AA  D L  +G  F   L R             ++
Sbjct: 276 LASLIDGRNFLQKLY----------AA--DCLHEIGQRFLSKLARLKETLTLLKLDGLEV 323

Query: 144 SD-------DGCEKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IG 192
           SD       + C K  +IG  K   V + G + +   C       ++L +++L  C  I 
Sbjct: 324 SDSLLQAIGESCNKLVEIGLSKCSGVTDGGISSLVARC-------SDLRTIDLTCCNLIT 376

Query: 193 DEGLVNLTGLCN-LKCLEL-SDTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAG 249
           +  L ++   C  L+CL L S + +   GL  ++    NL+ I+L+  G+ D +L+ LA 
Sbjct: 377 NNALDSIADNCKMLECLRLESCSLINEKGLERITTCCPNLKEIDLTDCGVDDAALQHLAK 436

Query: 250 LSSLKSLNLD-ARQITDTGLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLE 305
            S L+ L L     I+D G+A ++S  G L  LDL+    ITD G A L N  K ++ L 
Sbjct: 437 CSELRILKLGLCSSISDRGIAFISSNCGKLVELDLYRCNSITDDGLAALANGCKRIKLLN 496

Query: 306 ICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITS 362
           +C    +TD G+ H+  L  LT L L     +T   +  ++ G   L+ L++     +  
Sbjct: 497 LCYCNKITDTGLGHLGSLEELTNLELRCLVRVTGIGISSVAIGCKNLIELDLKRCYSVDD 556

Query: 363 AGLRHLKPLK-NLRSLTLESCKVT 385
           AGL  L     NLR LT+  C+VT
Sbjct: 557 AGLWALARYALNLRQLTISYCQVT 580



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 9/150 (6%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAF--AGLINLVKLDLERCTRI-HGGLVNLK-GLM 58
           ++L+  S L  L     ++I+ +G+ AF  +    LV+LDL RC  I   GL  L  G  
Sbjct: 432 QHLAKCSELRILKLGLCSSISDRGI-AFISSNCGKLVELDLYRCNSITDDGLAALANGCK 490

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNLEG 116
           +++ LN+ +CN ITD+ +  L  L  L +L++ C  +VT  GI+ +  G + L  L+L+ 
Sbjct: 491 RIKLLNLCYCNKITDTGLGHLGSLEELTNLELRCLVRVTGIGISSVAIGCKNLIELDLKR 550

Query: 117 C-PVTAACLDSLSALG-SLFYLNLNRCQLS 144
           C  V  A L +L+    +L  L ++ CQ++
Sbjct: 551 CYSVDDAGLWALARYALNLRQLTISYCQVT 580


>gi|428315480|ref|YP_007113362.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
           PCC 7112]
 gi|428239160|gb|AFZ04946.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
           PCC 7112]
          Length = 471

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 184/397 (46%), Gaps = 66/397 (16%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 68
           +NLT L   RN                          RI   +  LK L  L  L+I W 
Sbjct: 136 TNLTILQLDRN--------------------------RI-SDITPLKFLTNLTELSI-WY 167

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N +  S++ PL  LTNL  L +S + + D  I  L+ L+ L  L L    V  + ++ L 
Sbjct: 168 NQV--SNIYPLKNLTNLSVLDLSLNPLKD--IKILENLRNLNTLGLVDNQV--SNINHLK 221

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L SL +L+L   Q+SD    K+  +  L  L +  N+I+D  +  LK L+ L  L L++
Sbjct: 222 YLTSLTHLSLGTNQISDISPLKY--LNQLTELGISRNQISD--ISPLKHLSKLTELFLNN 277

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKL 247
             + D  +  L  L NL  L L+  +V   S L+ L+ L  L  IN     IS      L
Sbjct: 278 NKVSD--ITPLQFLTNLNTLWLNRNRVSDISTLKLLANLNTLYLINNQIYDIS-----PL 330

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
             L++LK ++L   +I D  L  L S+  LT L L   +I D  +  L+  K L+ L + 
Sbjct: 331 RYLTNLKQVDLTNNKIFD--LRMLDSI-NLTSLYLTNNQIEDVSS--LKFMKTLKVLSLA 385

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
              ++D  +  +K L+ LT L LS+N  ++D  +  +  L  L  L+++N+RI+   +  
Sbjct: 386 DNKISD--ISPLKSLTKLTELYLSEN-QISD--VSPLKSLIKLTRLDLANNRISDISM-- 438

Query: 368 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           LKPL NL  L LE   +T        +R+ P +  FR
Sbjct: 439 LKPLTNLLELYLEGNPLT--------NRNCPLVPDFR 467


>gi|298360724|gb|ADI77941.1| truncated internalin A [Listeria monocytogenes]
          Length = 403

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 142/277 (51%), Gaps = 30/277 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL- 191

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 192 -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGL 277
             +  ++ L+ L+ L     +++D + LA LT++  L
Sbjct: 354 --ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 388



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 179/374 (47%), Gaps = 58/374 (15%)

Query: 24  AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD- 73
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN    I + N  +TD 
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDI 113

Query: 74  -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN- 113
                              +D+ PL+ LTNL  L +  +++TD     +  L+ LT LN 
Sbjct: 114 TPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNR 168

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           LE    T + + +LS L SL  L+    Q++D   +  + + +L+ L++  N+++D  + 
Sbjct: 169 LELSSNTISDISALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSDISV- 224

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNLESL   +  I D  +  L  L NL  L L+  Q+   G   L+ LTNL  ++
Sbjct: 225 -LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLD 279

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   +
Sbjct: 280 LANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS 333

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + N KNL  L +    ++D     I  +SSLT L   Q     +  +  +S L  L ++
Sbjct: 334 PISNLKNLTYLTLYFNNISD-----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNI 385

Query: 354 NVSNSRITSAGLRH 367
           N     IT   + H
Sbjct: 386 NWLRLGITKLAILH 399


>gi|168704685|ref|ZP_02736962.1| hypothetical protein GobsU_34430 [Gemmata obscuriglobus UQM 2246]
          Length = 227

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 2/171 (1%)

Query: 235 SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
            F   +D +L  L     + ++ + DA + T+ GL  L  L  L  L L  + +T +   
Sbjct: 57  KFEAGTDAALAALKKRPQVGAVEVFDATRCTEKGLVVLKDLPELRRLALGKSDLTLARVN 116

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            +   K LR L + G GL+D  +  +K L+ L  L+LS+N  +TDK +  +  L  L  L
Sbjct: 117 AIAKCKELRDLRLPGAGLSDPELAPLKALTRLEQLDLSENAQVTDKGMATVKTLERLRGL 176

Query: 354 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
            ++ + +T  GL  LK L+ LRSL +   KVTA+  ++  + D+PNL   R
Sbjct: 177 YLAKTGLTDKGLAELKGLEGLRSLYVGGTKVTADAAEQF-ADDMPNLRVVR 226



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 14/161 (8%)

Query: 149 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
           +K  ++G+++V +      T++ LV LK L  L  L L   G  D  L  +  +   KC 
Sbjct: 70  KKRPQVGAVEVFD--ATRCTEKGLVVLKDLPELRRLAL---GKSDLTLARVNAIA--KCK 122

Query: 209 ELSDTQVGSSGL-----RHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQ 262
           EL D ++  +GL       L  LT LE ++LS    ++D  +  +  L  L+ L L    
Sbjct: 123 ELRDLRLPGAGLSDPELAPLKALTRLEQLDLSENAQVTDKGMATVKTLERLRGLYLAKTG 182

Query: 263 ITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLR 302
           +TD GLA L  L GL  L + G ++T D+   +  +  NLR
Sbjct: 183 LTDKGLAELKGLEGLRSLYVGGTKVTADAAEQFADDMPNLR 223



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 3/165 (1%)

Query: 72  TDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           TD+ +  L     + ++++   ++ T+ G+  LK L +L  L L    +T A +++++  
Sbjct: 62  TDAALAALKKRPQVGAVEVFDATRCTEKGLVVLKDLPELRRLALGKSDLTLARVNAIAKC 121

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC 189
             L  L L    LSD        +  L+ L+L  N ++TD+ +  +K L  L  L L   
Sbjct: 122 KELRDLRLPGAGLSDPELAPLKALTRLEQLDLSENAQVTDKGMATVKTLERLRGLYLAKT 181

Query: 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESIN 233
           G+ D+GL  L GL  L+ L +  T+V +      +  + NL  + 
Sbjct: 182 GLTDKGLAELKGLEGLRSLYVGGTKVTADAAEQFADDMPNLRVVR 226



 Score = 45.1 bits (105), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           L  LK L +LE L++     +TD  M  +  L  L+ L ++ + +TD G+A LKGL+ L 
Sbjct: 139 LAPLKALTRLEQLDLSENAQVTDKGMATVKTLERLRGLYLAKTGLTDKGLAELKGLEGLR 198

Query: 111 LLNLEGCPVTAACLDSLS 128
            L + G  VTA   +  +
Sbjct: 199 SLYVGGTKVTADAAEQFA 216



 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 26/138 (18%)

Query: 39  LDLERCTRIHGGLVNLKGLMKLE-------SLNIKWCNCI----------------TDSD 75
            D  RCT    GLV LK L +L         L +   N I                +D +
Sbjct: 81  FDATRCT--EKGLVVLKDLPELRRLALGKSDLTLARVNAIAKCKELRDLRLPGAGLSDPE 138

Query: 76  MKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           + PL  LT L+ L +S  ++VTD G+A +K L++L  L L    +T   L  L  L  L 
Sbjct: 139 LAPLKALTRLEQLDLSENAQVTDKGMATVKTLERLRGLYLAKTGLTDKGLAELKGLEGLR 198

Query: 135 YLNLNRCQLSDDGCEKFS 152
            L +   +++ D  E+F+
Sbjct: 199 SLYVGGTKVTADAAEQFA 216


>gi|332376374|gb|AEE63327.1| unknown [Dendroctonus ponderosae]
          Length = 507

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 133/330 (40%), Gaps = 52/330 (15%)

Query: 77  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           K   GL  L+ LQ++ +++         G +K+  LNLE   ++       + L  L  L
Sbjct: 108 KAFMGLVFLQHLQLNNNQIRSIFPGTFIGTKKIEQLNLENNEISILVEGGFAELLQLSVL 167

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           NL    +       FS +  L +L+LGFN+ITD   +H                   + L
Sbjct: 168 NLRSNNIKIIDPRAFSGLQKLVLLDLGFNQITD---LH-------------------QSL 205

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
           VNLT    L+ L++    +        S L NL  +NLS   + D     +   + LKSL
Sbjct: 206 VNLTA---LEVLKMEHNLIHQLSGSEFSSLANLYQLNLSANLLVDNFTIHMQPGNQLKSL 262

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
           +L   QI +          G+ HLD                   L  L++    ++D G 
Sbjct: 263 SLSHNQIEELKF-------GMAHLD------------------TLEELQLSFNNISDIGN 297

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
              + + SL  L L  N NL+       SGL  L SLN S++ I    +  + PL+NL  
Sbjct: 298 NMFEGMFSLRQLELPYN-NLSQFKTGWFSGLPQLTSLNFSHNHIEEIVISSVFPLRNLHF 356

Query: 377 LTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           L L +  +   D   L SR LP L   R E
Sbjct: 357 LDLSNNALGTFDYSALISR-LPGLTYLRLE 385



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 108/238 (45%), Gaps = 26/238 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGL--MKL 60
            + L  L+ L+ R NN I     +AF+GL  LV LDL   + T +H  LVNL  L  +K+
Sbjct: 158 FAELLQLSVLNLRSNN-IKIIDPRAFSGLQKLVLLDLGFNQITDLHQSLVNLTALEVLKM 216

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-----E 115
           E       N I        S L NL  L +S + + D+   +++   +L  L+L     E
Sbjct: 217 EH------NLIHQLSGSEFSSLANLYQLNLSANLLVDNFTIHMQPGNQLKSLSLSHNQIE 270

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
                 A LD+L        L L+   +SD G   F  + SL+ L L +N ++       
Sbjct: 271 ELKFGMAHLDTLEE------LQLSFNNISDIGNNMFEGMFSLRQLELPYNNLSQFKTGWF 324

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG----SSGLRHLSGLTNL 229
            GL  L SLN     I +  + ++  L NL  L+LS+  +G    S+ +  L GLT L
Sbjct: 325 SGLPQLTSLNFSHNHIEEIVISSVFPLRNLHFLDLSNNALGTFDYSALISRLPGLTYL 382


>gi|167523190|ref|XP_001745932.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775733|gb|EDQ89356.1| predicted protein [Monosiga brevicollis MX1]
          Length = 2039

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 171/432 (39%), Gaps = 40/432 (9%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN-LKGLMK 59
           +  +GLS LTSL+ +    I    + AF GL  L +LDL  +    I  G+ + L  L K
Sbjct: 470 QAFAGLSRLTSLALKSRAKIANMAVNAFVGLDRLPELDLSNQAIQEIDIGMFSGLTSLTK 529

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L+  N +  N I  +   PL    NL +L  + +       +  +GL +LT LNL  C V
Sbjct: 530 LDLSNNR-LNTIQSTAFNPLE---NLSALNFAGNPFNGVAASAFRGLTQLTALNLSHCNV 585

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVHLK 176
           +     +   L  +  L+L+  +L     + F+ + +L  L+L    IT         L 
Sbjct: 586 STLIGGTFETLSRVTSLDLSGIKLRTLPSQAFAGLSALPELDLSNMRITTVAGNAFAGLD 645

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LT L+ L      I      NL  L  L    L  + + ++   +L  L NL       
Sbjct: 646 ALTTLKLLGNPITTIESSAFANLPALKALNLSHLGLSVLPANTFVNLPALQNLTLTGNQL 705

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             +   +         ++SL+L  +++T     A + LTGLT L+L    IT        
Sbjct: 706 ATLGASNQPAFVACPRIRSLDLSMQKLTAITAHAFSGLTGLTSLNLRNNLITSLATGAFA 765

Query: 297 NFK---------------------------NLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
           N                              +  L+I    LT         LS+L  L+
Sbjct: 766 NLSAELASNAPSTLAHVLYLLVCFAALIKCQVTQLDIRNNKLTALASSSFDGLSALQSLS 825

Query: 330 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 389
           L+ N  +T   L + SGL  L  L +  + +   G   L PL  L +L L S ++T    
Sbjct: 826 LA-NMAITKLPLGVFSGLNALQVLRLDGTGVQEIGAMVLAPLSQLSTLWLNSSQLTTITT 884

Query: 390 KRLQSRDLPNLV 401
           K L S+  P+L+
Sbjct: 885 KWLASK--PHLM 894



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 138/372 (37%), Gaps = 76/372 (20%)

Query: 18  RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 77
           RNN IT+    AF  L+NL  LDLE  +          GL +L SL +K    I +  + 
Sbjct: 436 RNNPITSLAGSAFVELLNLQTLDLEDSSLTTLPAQAFAGLSRLTSLALKSRAKIANMAVN 495

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
              GL  L  L +S   + +  I    GL  LT L+L                       
Sbjct: 496 AFVGLDRLPELDLSNQAIQEIDIGMFSGLTSLTKLDLSNN-------------------R 536

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD---- 193
           LN  Q        F+ + +L  LN   N          +GLT L +LNL  C +      
Sbjct: 537 LNTIQ-----STAFNPLENLSALNFAGNPFNGVAASAFRGLTQLTALNLSHCNVSTLIGG 591

Query: 194 --EGLVNLT------------------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
             E L  +T                  GL  L  L+LS+ ++ +      +GL  L ++ 
Sbjct: 592 TFETLSRVTSLDLSGIKLRTLPSQAFAGLSALPELDLSNMRITTVAGNAFAGLDALTTLK 651

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L    I+       A L +LK+LNL    ++        +L  L +L L G ++   GA+
Sbjct: 652 LLGNPITTIESSAFANLPALKALNLSHLGLSVLPANTFVNLPALQNLTLTGNQLATLGAS 711

Query: 294 YLRNF---KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
               F     +RSL++                             LT  T    SGLTGL
Sbjct: 712 NQPAFVACPRIRSLDLSMQ-------------------------KLTAITAHAFSGLTGL 746

Query: 351 VSLNVSNSRITS 362
            SLN+ N+ ITS
Sbjct: 747 TSLNLRNNLITS 758



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 169/436 (38%), Gaps = 62/436 (14%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLESLN 64
           L NL++L+F   N        AF GL  L  L+L  C   T I G    L  +  L+   
Sbjct: 548 LENLSALNFA-GNPFNGVAASAFRGLTQLTALNLSHCNVSTLIGGTFETLSRVTSLDLSG 606

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           IK     + +     +GL+ L  L +S  ++T        GL  LT L L G P+T    
Sbjct: 607 IKLRTLPSQA----FAGLSALPELDLSNMRITTVAGNAFAGLDALTTLKLLGNPITTIES 662

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL--------------------------- 157
            + + L +L  LNL+   LS      F  + +L                           
Sbjct: 663 SAFANLPALKALNLSHLGLSVLPANTFVNLPALQNLTLTGNQLATLGASNQPAFVACPRI 722

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTG------------- 201
           + L+L   ++T        GLT L SLNL +     +      NL+              
Sbjct: 723 RSLDLSMQKLTAITAHAFSGLTGLTSLNLRNNLITSLATGAFANLSAELASNAPSTLAHV 782

Query: 202 -----------LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
                       C +  L++ + ++ +       GL+ L+S++L+   I+   L   +GL
Sbjct: 783 LYLLVCFAALIKCQVTQLDIRNNKLTALASSSFDGLSALQSLSLANMAITKLPLGVFSGL 842

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
           ++L+ L LD   + + G   L  L+ L+ L L  +++T     +L +  +L  +++    
Sbjct: 843 NALQVLRLDGTGVQEIGAMVLAPLSQLSTLWLNSSQLTTITTKWLASKPHLMQVDLSHTQ 902

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           L        +DL +L  +NL     LT       + L  L SL VS   + +     L  
Sbjct: 903 LQKVPTFAFEDLPALEAINLDNTAALTTVEGSAFANLPRLQSLVVSGGSLETWASNALVD 962

Query: 371 LKNLRSLTLESCKVTA 386
             +L +LT+   ++ A
Sbjct: 963 CPSLTTLTISHQRLAA 978



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 176/437 (40%), Gaps = 84/437 (19%)

Query: 3    ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
            +   GLS++TSL     NA+   G  AF G++ L  LDL     +  G  ++  L KL S
Sbjct: 1507 QAFEGLSHVTSLDLS-GNALQWVGQAAFQGMVALTTLDLSDTQLLALGNASVAHLPKLTS 1565

Query: 63   LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
            L  K    +       L  L  L +L +S ++V       L  L KL             
Sbjct: 1566 L--KLPTTLRQLASAALLDLPQLATLDLSATQVQQLASGALSNLAKL------------- 1610

Query: 123  CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
              DSL    SL  L          GC  F+ +  +  L+L   ++       L GL  LE
Sbjct: 1611 --DSLIVSPSLETLV--------PGC--FTNMTGVTSLDLAGTQLAQLEAQVLTGLPALE 1658

Query: 183  SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV----------------------GSSGL 220
            ++NL    +   G +   G  +L  ++LS+T +                       S+G+
Sbjct: 1659 TINLSVSAVRTLGPLAFAGPTSLSAVDLSNTMIEAWTTNNASQGPFSKSTAIVSLSSAGM 1718

Query: 221  -------RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG------ 267
                       GL++L +++LS   I+       AGLS++ +L L+  ++T  G      
Sbjct: 1719 VLKTLTPHGFDGLSHLSAMDLSAADITSIPALAFAGLSNVTALLLNVSRLTQLGSQGFTG 1778

Query: 268  -------------LAALTS-----LTGLTHLDLFGARITDSGAAYLRNFK-NLRSLEICG 308
                         LA L +     LT L  L++ GA +T   A   +     L+ L++ G
Sbjct: 1779 LNHLLTLDLSNAPLATLPASGFAGLTTLQTLNMSGAHVTALPADAFQGLNVQLKDLDLSG 1838

Query: 309  GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA-GLRH 367
              L        K +S L  L LS N  +T    + + GL+ L+ L++S++ + +   +  
Sbjct: 1839 NKLARLEAAAFKAVSGLQRLYLSGN-QITQVDAQALGGLSTLIHLDLSDNALAAPLNVSV 1897

Query: 368  LKPLKNLRSLTLESCKV 384
            L PL +L+ L L + K+
Sbjct: 1898 LAPLTSLQQLCLGNVKI 1914



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 158/376 (42%), Gaps = 25/376 (6%)

Query: 2    TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHG-GLVNLKGLM 58
            TE LSGL+N T L       +T+ G  A A    L K+DL  +  TRI      NL  ++
Sbjct: 1267 TEALSGLTNFTQLQLAPAQ-LTSWGSNAIAQCPALTKVDLAGQALTRIPASAFANLSHVV 1325

Query: 59   KLE-SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 117
             ++ S N+     +T  +     G   + SLQ+  + +T+        L   TL +L   
Sbjct: 1326 TIDLSDNL----VLTTIEAGAFVGTKQVTSLQLVHTPLTNLTNGSFTTLGVATL-DLSDA 1380

Query: 118  PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 177
             +T    D++S L +L  L L    L+    + F  +  L  ++L    ++       + 
Sbjct: 1381 KLTQLPGDAVSQLPALTSLQLPST-LNVLDSDAFHALPKLVTVDLRPTSVSHLPTGAFRD 1439

Query: 178  LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
            L  L+S+ L    +     +  + +  L  L LS   + S       GL +L  +NLS +
Sbjct: 1440 LPALQSIQLRGQQLTALDSMVWSAVPRLTALNLSQQALVSVAPAPFVGLASLTQLNLSHS 1499

Query: 238  GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            G+     +   GLS + SL+L    +   G AA   +  LT LDL   ++   G A + +
Sbjct: 1500 GLIHLPDQAFEGLSHVTSLDLSGNALQWVGQAAFQGMVALTTLDLSDTQLLALGNASVAH 1559

Query: 298  FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL---TDKTLELISGLTGLVSLN 354
               L SL++            ++ L+S  LL+L Q   L     +  +L SG   L +L 
Sbjct: 1560 LPKLTSLKLP---------TTLRQLASAALLDLPQLATLDLSATQVQQLASG--ALSNLA 1608

Query: 355  VSNSRITSAGLRHLKP 370
              +S I S  L  L P
Sbjct: 1609 KLDSLIVSPSLETLVP 1624



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 181/456 (39%), Gaps = 62/456 (13%)

Query: 2    TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER---CTRIHGGLVNLKGLM 58
            TE  +G S L +L    NN I+  G  AF GL NL +L +E         G    L+ + 
Sbjct: 981  TEAFAGASGLQALDLSYNN-ISDIGKNAFVGLNNLTQLHIEGNPIAVLEEGAFAGLRRVQ 1039

Query: 59   KLE----SLNIKWCNCITDSDM---------------KPLSGLTNLKSLQISCSKVTDSG 99
             L+    +  I   N   +                    L+ L  L S+  S +K++   
Sbjct: 1040 ALDLAATAFTILPTNVFANMSALGQVTLPASLATLQSNALAHLPMLASVDFSHTKLSALP 1099

Query: 100  IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 159
               L  L +LT + L    +TA   ++LS    L  L+L+  QL+            L+ 
Sbjct: 1100 EYSLVDLPRLTTVALPPNRLTAVAANALSDCPGLLSLDLSNQQLTTLETNFLIGATHLQA 1159

Query: 160  LNLGFNE----ITDECL--------------------VHLKGLTNLESLNLDSCGIGDEG 195
            LNL  N     +  E                      +H      + +L+L +  + D  
Sbjct: 1160 LNLSHNSKLEAVQSEAFAGLTRLTTLDLTGVVLTSLALHAFSYLRITNLDLSTTQLADLP 1219

Query: 196  LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
               L  L  L  ++L  T + +   R    L  L S++L  T +       L+GL++   
Sbjct: 1220 TEALWNLPELAAVQLPAT-LTTLNKRSFYQLPALRSLDLRHTKVKALPTEALSGLTNFTQ 1278

Query: 256  LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL---T 312
            L L   Q+T  G  A+     LT +DL G  +T   A+   N  ++ ++++    +    
Sbjct: 1279 LQLAPAQLTSWGSNAIAQCPALTKVDLAGQALTRIPASAFANLSHVVTIDLSDNLVLTTI 1338

Query: 313  DAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
            +AG     K ++SL L++ +   NLT+ +   +    G+ +L++S++++T      +  L
Sbjct: 1339 EAGAFVGTKQVTSLQLVH-TPLTNLTNGSFTTL----GVATLDLSDAKLTQLPGDAVSQL 1393

Query: 372  KNLRSLTLESCKVTANDIKRLQSRDLPNLVS--FRP 405
              L SL L S   T N +       LP LV+   RP
Sbjct: 1394 PALTSLQLPS---TLNVLDSDAFHALPKLVTVDLRP 1426



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 151/376 (40%), Gaps = 40/376 (10%)

Query: 2    TENLSGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMK 59
            + +  GLS L SLS   N AIT   +  F+GL  + +++LD      I G +V    L  
Sbjct: 812  SSSFDGLSALQSLSLA-NMAITKLPLGVFSGLNALQVLRLDGTGVQEI-GAMV----LAP 865

Query: 60   LESLNIKWCNC--ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 117
            L  L+  W N   +T    K L+   +L  + +S +++        + L  L  +NL+  
Sbjct: 866  LSQLSTLWLNSSQLTTITTKWLASKPHLMQVDLSHTQLQKVPTFAFEDLPALEAINLDNT 925

Query: 118  P----VTAACLDSLSALGSLFY---------------------LNLNRCQLSDDGCEKFS 152
                 V  +   +L  L SL                       L ++  +L+    E F+
Sbjct: 926  AALTTVEGSAFANLPRLQSLVVSGGSLETWASNALVDCPSLTTLTISHQRLAALPTEAFA 985

Query: 153  KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLEL 210
                L+ L+L +N I+D       GL NL  L+++   I   +EG     GL  ++ L+L
Sbjct: 986  GASGLQALDLSYNNISDIGKNAFVGLNNLTQLHIEGNPIAVLEEG--AFAGLRRVQALDL 1043

Query: 211  SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 270
            + T          + ++ L  + L    ++      LA L  L S++    +++     +
Sbjct: 1044 AATAFTILPTNVFANMSALGQVTLP-ASLATLQSNALAHLPMLASVDFSHTKLSALPEYS 1102

Query: 271  LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
            L  L  LT + L   R+T   A  L +   L SL++    LT      +   + L  LNL
Sbjct: 1103 LVDLPRLTTVALPPNRLTAVAANALSDCPGLLSLDLSNQQLTTLETNFLIGATHLQALNL 1162

Query: 331  SQNCNLTDKTLELISG 346
            S N  L     E  +G
Sbjct: 1163 SHNSKLEAVQSEAFAG 1178


>gi|18568227|gb|AAL75968.1|AF467464_1 PPA [Gallus gallus]
          Length = 188

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 107/189 (56%), Gaps = 16/189 (8%)

Query: 207 CLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQI 263
           C +LSD       L+HL+ GL  L  +NLSF G ISD  L  L+ +SSL+SLNL +   I
Sbjct: 6   CQKLSDLS-----LKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNI 60

Query: 264 TDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KH 318
           +DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +    LRSL +C   ++D G+ + 
Sbjct: 61  SDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRM 119

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRS 376
           ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++   +RIT  GL  +  L   + 
Sbjct: 120 VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCPKV 179

Query: 377 LTLESCKVT 385
           L L   ++T
Sbjct: 180 LNLGLWQMT 188



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 8/169 (4%)

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLL 112
           +GL +L  LN+ +C  I+D+ +  LS +++L+SL + SC  ++D+GI +L  G  +L+ L
Sbjct: 19  RGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGL 78

Query: 113 NLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNEIT 168
           ++  C  V    L  ++  L  L  L+L  C +SD+G  +   ++  L+ LN+G    IT
Sbjct: 79  DVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRIT 138

Query: 169 DECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQV 215
           D+ L  + + L+ L  ++L  C  I   GL  +T L   K L L   Q+
Sbjct: 139 DKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCPKVLNLGLWQM 187



 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 88/169 (52%), Gaps = 7/169 (4%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLN 64
           GL  L  L+      I+  G+   + + +L  L+L  C  I   G+++L  G ++L  L+
Sbjct: 20  GLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 79

Query: 65  IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTA 121
           + +C+ + D  +  ++ GL  L+SL +    ++D GI   ++ +  L  LN+  C  +T 
Sbjct: 80  VSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITD 139

Query: 122 ACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 168
             L+ ++  L  L  ++L  C +++  G E+ +++   KVLNLG  ++T
Sbjct: 140 KGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCPKVLNLGLWQMT 188



 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 6/102 (5%)

Query: 296 RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVS 352
           R    LR L +  CGG ++DAG+ H+  +SSL  LNL    N++D   + L  G   L  
Sbjct: 19  RGLGRLRQLNLSFCGG-ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSG 77

Query: 353 LNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 392
           L+VS   ++    L ++ + L  LRSL+L SC ++   I R+
Sbjct: 78  LDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRM 119


>gi|406939756|gb|EKD72712.1| hypothetical protein ACD_45C00605G0001 [uncultured bacterium]
          Length = 541

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 93/198 (46%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           LNL    +   G    SK  +L  L+L  N+I D         T L  L + +  IG EG
Sbjct: 69  LNLEMNHIGPKGAALLSKNKTLSRLDLSNNQIGDAGASAFSKNTTLTELYIIANAIGPEG 128

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
              L+   NL+ L + D  +GSSG   L+ + N++ I+L    I D  +   +  +SLKS
Sbjct: 129 AKGLSQNKNLRILLIGDNHIGSSGAISLANMRNIQRISLMNNDIDDDGIIPYSKNTSLKS 188

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           + L+   ITD G   LT+   L  + L    I D GA  L   K + SL++    ++  G
Sbjct: 189 IALNKNHITDKGAKVLTNSISLKEIWLSSNEIGDEGAISLAYNKYITSLDVSNNHISTIG 248

Query: 316 VKHIKDLSSLTLLNLSQN 333
           +K ++   ++T L  + N
Sbjct: 249 IKALQQNKNITELETTGN 266



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 149/331 (45%), Gaps = 16/331 (4%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I D+     S  T L  L I  + +   G   L   + L +L +    + ++   SL+
Sbjct: 98  NQIGDAGASAFSKNTTLTELYIIANAIGPEGAKGLSQNKNLRILLIGDNHIGSSGAISLA 157

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            + ++  ++L    + DDG   +SK  SLK + L  N ITD+    L    +L+ + L S
Sbjct: 158 NMRNIQRISLMNNDIDDDGIIPYSKNTSLKSIALNKNHITDKGAKVLTNSISLKEIWLSS 217

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLESI-------NLSFTG 238
             IGDEG ++L     +  L++S+  + + G++ L     +T LE+        +L F  
Sbjct: 218 NEIGDEGAISLAYNKYITSLDVSNNHISTIGIKALQQNKNITELETTGNLDKPPSLCFND 277

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL----THLDLFGARITDSGAAY 294
           I D  +       S+  LNL + ++ D  ++ +TS   L      L +   +I  +GA  
Sbjct: 278 I-DKRVNVSVEDPSIVRLNLYSCELRDADISFVTSYLNLHPYINFLQISNNKIGSNGAIL 336

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           L   K L++L I    L     +     ++L  L+L  N +L +   ++++    L  LN
Sbjct: 337 LGQNKTLKTLNISNNLLDSRSAEAFSKNTTLIRLDLEGN-HLGENGAKILANNNVLDVLN 395

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           +S + +   G   L  +K+L+ L  +  +++
Sbjct: 396 ISKNYVGDDGFAALTKMKSLKILIADDNQIS 426



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 133/306 (43%), Gaps = 16/306 (5%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLD----LERCTRIHGGLVNLKGLMKLESLNIK 66
           +TSL    NN I+  G+KA     N+ +L+    L++   +    ++ +  + +E  +I 
Sbjct: 234 ITSLDVS-NNHISTIGIKALQQNKNITELETTGNLDKPPSLCFNDIDKRVNVSVEDPSIV 292

Query: 67  WCNCIT----DSDMKPLSGLTNLKS----LQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
             N  +    D+D+  ++   NL      LQIS +K+  +G   L   + L  LN+    
Sbjct: 293 RLNLYSCELRDADISFVTSYLNLHPYINFLQISNNKIGSNGAILLGQNKTLKTLNISNNL 352

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           + +   ++ S   +L  L+L    L ++G +  +    L VLN+  N + D+    L  +
Sbjct: 353 LDSRSAEAFSKNTTLIRLDLEGNHLGENGAKILANNNVLDVLNISKNYVGDDGFAALTKM 412

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            +L+ L  D   I D G+   +       L LS   + S G   +S   +L  + LS   
Sbjct: 413 KSLKILIADDNQISDLGV---SSPFLFHELYLSGNNISSIGADMISHNPSLTDLGLSDNY 469

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 298
           + D     LA   S+ SLNL+  +I  TG  A+     L  L++    I   G A L N 
Sbjct: 470 LGDDGATILARNKSIISLNLNYNEIGSTGAIAIAQNIILRDLNIAHNHICSIGLAALYNN 529

Query: 299 KNLRSL 304
           K L  L
Sbjct: 530 KTLEKL 535



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 151/352 (42%), Gaps = 47/352 (13%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           L N++ + ++  +N    N I D  + P S  T+LKS+ ++ + +TD G   L     L 
Sbjct: 156 LANMRNIQRISLMN----NDIDDDGIIPYSKNTSLKSIALNKNHITDKGAKVLTNSISLK 211

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK---------IGSL-KVL 160
            + L    +      SL+    +  L+++   +S  G +   +          G+L K  
Sbjct: 212 EIWLSSNEIGDEGAISLAYNKYITSLDVSNNHISTIGIKALQQNKNITELETTGNLDKPP 271

Query: 161 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC----LELSDTQVG 216
           +L FN+I     V ++  + +  LNL SC + D  +  +T   NL      L++S+ ++G
Sbjct: 272 SLCFNDIDKRVNVSVEDPS-IVRLNLYSCELRDADISFVTSYLNLHPYINFLQISNNKIG 330

Query: 217 SSGLRHLSGLTNLESINLS-----------FT-------------GISDGSLRKLAGLSS 252
           S+G   L     L+++N+S           F+              + +   + LA  + 
Sbjct: 331 SNGAILLGQNKTLKTLNISNNLLDSRSAEAFSKNTTLIRLDLEGNHLGENGAKILANNNV 390

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  LN+    + D G AALT +  L  L     +I+D G +    F     L + G  ++
Sbjct: 391 LDVLNISKNYVGDDGFAALTKMKSLKILIADDNQISDLGVSSPFLF---HELYLSGNNIS 447

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
             G   I    SLT L LS N  L D    +++    ++SLN++ + I S G
Sbjct: 448 SIGADMISHNPSLTDLGLSDNY-LGDDGATILARNKSIISLNLNYNEIGSTG 498



 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 141/326 (43%), Gaps = 15/326 (4%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113
           L+   K+++LN++  N I       LS    L  L +S +++ D+G +       LT L 
Sbjct: 60  LQQYPKVDTLNLEM-NHIGPKGAALLSKNKTLSRLDLSNNQIGDAGASAFSKNTTLTELY 118

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           +    +       LS   +L  L +    +   G    + + +++ ++L  N+I D+ ++
Sbjct: 119 IIANAIGPEGAKGLSQNKNLRILLIGDNHIGSSGAISLANMRNIQRISLMNNDIDDDGII 178

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
                T+L+S+ L+   I D+G   LT   +LK + LS  ++G  G   L+    + S++
Sbjct: 179 PYSKNTSLKSIALNKNHITDKGAKVLTNSISLKEIWLSSNEIGDEGAISLAYNKYITSLD 238

Query: 234 LSFTGISDGSLRKLAGLSSLKSL----NLDARQI-----TDTGLAALTSLTGLTHLDLFG 284
           +S   IS   ++ L    ++  L    NLD          D  +        +  L+L+ 
Sbjct: 239 VSNNHISTIGIKALQQNKNITELETTGNLDKPPSLCFNDIDKRVNVSVEDPSIVRLNLYS 298

Query: 285 ARITDSGAAYLRNFKNLRS----LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
             + D+  +++ ++ NL      L+I    +   G   +    +L  LN+S N  L  ++
Sbjct: 299 CELRDADISFVTSYLNLHPYINFLQISNNKIGSNGAILLGQNKTLKTLNISNNL-LDSRS 357

Query: 341 LELISGLTGLVSLNVSNSRITSAGLR 366
            E  S  T L+ L++  + +   G +
Sbjct: 358 AEAFSKNTTLIRLDLEGNHLGENGAK 383


>gi|290990502|ref|XP_002677875.1| predicted protein [Naegleria gruberi]
 gi|284091485|gb|EFC45131.1| predicted protein [Naegleria gruberi]
          Length = 225

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 1/148 (0%)

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           +N+ F+      ++ ++ +  L SL++    I D G   ++ +  LT L++   RI+D G
Sbjct: 55  VNVRFSNYFLEQVKFISEMKQLTSLDISYHNIGDEGAKYISEMNQLTSLNIATNRISDEG 114

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
           A ++   K L  L+I        G K+I ++  LT LN+ +N  + D+  + IS +  L+
Sbjct: 115 AKFISEMKQLIILDIYENETGVEGAKYISEMKQLTSLNIYEN-EIGDEGAKYISKMKQLI 173

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           SLN++N+RI   G + +  +  L SL +
Sbjct: 174 SLNIANNRIGVEGAKFISEMNQLTSLYI 201



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 1/160 (0%)

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
           ++ +S +  L S+++S+  I D   + ++ ++ L SLN+   +I+D G   ++ +  L  
Sbjct: 67  VKFISEMKQLTSLDISYHNIGDEGAKYISEMNQLTSLNIATNRISDEGAKFISEMKQLII 126

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           LD++       GA Y+   K L SL I    + D G K+I  +  L  LN++ N  +  +
Sbjct: 127 LDIYENETGVEGAKYISEMKQLTSLNIYENEIGDEGAKYISKMKQLISLNIANN-RIGVE 185

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             + IS +  L SL +  + I   G + +  +K L S  L
Sbjct: 186 GAKFISEMNQLTSLYIYGNEIGDEGAKLINEMKQLISQIL 225



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 1/155 (0%)

Query: 150 KF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 208
           KF S++  L  L++ ++ I DE   ++  +  L SLN+ +  I DEG   ++ +  L  L
Sbjct: 68  KFISEMKQLTSLDISYHNIGDEGAKYISEMNQLTSLNIATNRISDEGAKFISEMKQLIIL 127

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
           ++ + + G  G +++S +  L S+N+    I D   + ++ +  L SLN+   +I   G 
Sbjct: 128 DIYENETGVEGAKYISEMKQLTSLNIYENEIGDEGAKYISKMKQLISLNIANNRIGVEGA 187

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
             ++ +  LT L ++G  I D GA  +   K L S
Sbjct: 188 KFISEMNQLTSLYIYGNEIGDEGAKLINEMKQLIS 222



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 7/196 (3%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCNCITDSDMKPLSGLTNLKSLQISCS 93
           KLD+E    +    V L   MK + +N    +++ N   +  +K +S +  L SL IS  
Sbjct: 28  KLDIEFTKELTEKRVEL--FMKSQFVNSIVNVRFSNYFLEQ-VKFISEMKQLTSLDISYH 84

Query: 94  KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
            + D G  Y+  + +LT LN+    ++      +S +  L  L++   +   +G +  S+
Sbjct: 85  NIGDEGAKYISEMNQLTSLNIATNRISDEGAKFISEMKQLIILDIYENETGVEGAKYISE 144

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
           +  L  LN+  NEI DE   ++  +  L SLN+ +  IG EG   ++ +  L  L +   
Sbjct: 145 MKQLTSLNIYENEIGDEGAKYISKMKQLISLNIANNRIGVEGAKFISEMNQLTSLYIYGN 204

Query: 214 QVGSSGLRHLSGLTNL 229
           ++G  G + ++ +  L
Sbjct: 205 EIGDEGAKLINEMKQL 220



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 78/154 (50%), Gaps = 1/154 (0%)

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           ++ +  L  L++S   +G  G +++S +  L S+N++   ISD   + ++ +  L  L++
Sbjct: 70  ISEMKQLTSLDISYHNIGDEGAKYISEMNQLTSLNIATNRISDEGAKFISEMKQLIILDI 129

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
              +    G   ++ +  LT L+++   I D GA Y+   K L SL I    +   G K 
Sbjct: 130 YENETGVEGAKYISEMKQLTSLNIYENEIGDEGAKYISKMKQLISLNIANNRIGVEGAKF 189

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
           I +++ LT L +  N  + D+  +LI+ +  L+S
Sbjct: 190 ISEMNQLTSLYIYGN-EIGDEGAKLINEMKQLIS 222



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 84/169 (49%), Gaps = 4/169 (2%)

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
           ++N+ F+    E +  +  +  L SL++    IGDEG   ++ +  L  L ++  ++   
Sbjct: 54  IVNVRFSNYFLEQVKFISEMKQLTSLDISYHNIGDEGAKYISEMNQLTSLNIATNRISDE 113

Query: 219 GLRHLSGLTNLESINL--SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276
           G + +S +  L  +++  + TG+ +G+ + ++ +  L SLN+   +I D G   ++ +  
Sbjct: 114 GAKFISEMKQLIILDIYENETGV-EGA-KYISEMKQLTSLNIYENEIGDEGAKYISKMKQ 171

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
           L  L++   RI   GA ++     L SL I G  + D G K I ++  L
Sbjct: 172 LISLNIANNRIGVEGAKFISEMNQLTSLYIYGNEIGDEGAKLINEMKQL 220


>gi|219821270|gb|ACL37758.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 159/348 (45%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L++  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTSLDVANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L    I +  +  + GL  L  LEL + Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELELGYNQISN--ISPIEGLTALTSLELHENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT ++ L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAAHNQISD--LTPLANLTRISELG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 176/364 (48%), Gaps = 62/364 (17%)

Query: 26  GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD----SDMKPLSG 81
           G+K+  GL  L  L     T+I+ G   L  +  L+ L  K  + + +    +D+ PL+ 
Sbjct: 29  GIKSIDGLEYLNNL-----TQINFGFNQLTDITPLKDL-TKLVDIVMNNNQITDISPLAN 82

Query: 82  LTNLKSLQISCSKVTD--------------------SGIAYLKGLQKLTLLNLEGCPVTA 121
           LTNL  L +  +++TD                    S I+ L GL  L  L+  G  VT 
Sbjct: 83  LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTNLQQLSF-GNQVT- 140

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             L  L+ L +L  L+++  ++SD      +K+ +L+ L    N+I+D  +  L  LTNL
Sbjct: 141 -DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           + L+L+   + D G   L  L NL  L++++ Q+  S L  LSGLT L  + L +  IS+
Sbjct: 196 DELSLNGNQLKDIG--TLASLTNLTSLDVANNQI--SNLAPLSGLTKLTELELGYNQISN 251

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             +  + GL++L SL L   Q+ D  ++ +++L  LT+L L+   I+D     + +   L
Sbjct: 252 --ISPIEGLTALTSLELHENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 305

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           + L      ++D  V  + +L+++  L+ + N          IS LT L +L    +RI+
Sbjct: 306 QRLFFYNNKVSD--VSSLANLTNINWLSAAHNQ---------ISDLTPLANL----TRIS 350

Query: 362 SAGL 365
             GL
Sbjct: 351 ELGL 354


>gi|332030619|gb|EGI70307.1| F-box/LRR-repeat protein 14 [Acromyrmex echinatior]
          Length = 837

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 146/289 (50%), Gaps = 57/289 (19%)

Query: 54  LKGLMKLESLNIKWCNCITDSDM----------------------------KPLSGLTNL 85
           LKG+  LE+LN+  C  ITDS +                            +    L NL
Sbjct: 498 LKGVPNLEALNLSGCYNITDSGITNAFCQEYPSLIELNLSLCKQVTDTSLSRIAQFLKNL 557

Query: 86  KSLQI-SCSKVTDSG---IAYLKGLQKLTLLNLEGCPVTA-------ACLDSLSALG--S 132
           + L++  C  +T++G   IA+  GL+KL  L+L  C   +       A L+  +A G  +
Sbjct: 558 EHLELGGCCNITNTGLLLIAW--GLKKLKRLDLRSCWHVSDLGIAHLAGLNRETADGNLA 615

Query: 133 LFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC 189
           L +L+L  CQ LSD+     S  + +LK +NL F   ITD  + HL  +++L  LNL SC
Sbjct: 616 LEHLSLQDCQRLSDEALRHVSLGLTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSC 675

Query: 190 -GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLR 245
             I D G+  L  G   +  L++S   ++G   L H+S GL NL+S++LS   ISD  + 
Sbjct: 676 DNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGIC 735

Query: 246 KLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 291
           K+A    L++LN+    ++TD GL  +  S+  L  +DL+G  +IT SG
Sbjct: 736 KIA----LETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTSG 780



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 45/240 (18%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHG-GLVNLK-G 56
           GL  L  L  R    ++  G+   AGL        + L  L L+ C R+    L ++  G
Sbjct: 579 GLKKLKRLDLRSCWHVSDLGIAHLAGLNRETADGNLALEHLSLQDCQRLSDEALRHVSLG 638

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L  L+S+N+ +C CITDS +K L+ +++L+ L + SC  ++D G+AYL +G  ++T L++
Sbjct: 639 LTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDV 698

Query: 115 EGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C      A +     L +L  L+L+ CQ+SD+G  K +                    
Sbjct: 699 SFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKIA-------------------- 738

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
                   LE+LN+  C  + D GL  +   + NLKC++L   T++ +SGL  +  L  L
Sbjct: 739 --------LETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTSGLERIMKLPQL 790



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 121/248 (48%), Gaps = 44/248 (17%)

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVN-----LTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           LKG+ NLE+LNL  C  I D G+ N        L  L    C +++DT +     R    
Sbjct: 498 LKGVPNLEALNLSGCYNITDSGITNAFCQEYPSLIELNLSLCKQVTDTSLS----RIAQF 553

Query: 226 LTNLESI------NLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--- 275
           L NLE +      N++ TG+    L    GL  LK L+L +   ++D G+A L  L    
Sbjct: 554 LKNLEHLELGGCCNITNTGL----LLIAWGLKKLKRLDLRSCWHVSDLGIAHLAGLNRET 609

Query: 276 -----GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSS 324
                 L HL L    R++D    ++      L+S+     +C   +TD+GVKH+  +SS
Sbjct: 610 ADGNLALEHLSLQDCQRLSDEALRHVSLGLTTLKSINLSFCVC---ITDSGVKHLARMSS 666

Query: 325 LTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLES 381
           L  LNL    N++D  +  L  G + + SL+VS   +I    L H+ + L NL+SL+L +
Sbjct: 667 LRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSA 726

Query: 382 CKVTANDI 389
           C+++   I
Sbjct: 727 CQISDEGI 734


>gi|427735492|ref|YP_007055036.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
           7116]
 gi|427370533|gb|AFY54489.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
           7116]
          Length = 344

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 119/240 (49%), Gaps = 18/240 (7%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           SD+KPLS LTNL  L +  + +  S +  L  L  LT L+L    ++   +  ++ L  L
Sbjct: 110 SDIKPLSKLTNLTKLYLDSNNI--SQVKELANLINLTELSLSYNQLSH--VKGITNLTKL 165

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
            YLNL+R Q++D      + + +L  L L  N+I  E +  L  L NL  L +    I +
Sbjct: 166 EYLNLHRNQITD--IRPLANLTNLIKLQLSSNQI--ESIKPLSKLNNLTELIVYQNKINE 221

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
             +  +T L NLK L +    +  S ++ L  LTNL  + ++   IS+  +  LA LS+L
Sbjct: 222 --VKEITNLINLKYLNIGKNNI--SNVKPLWELTNLIELYINENKISN--IETLADLSNL 275

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
           K L L   QI+D  +  L  LT LT L++   +I D  A  L N  NL  L   G  + +
Sbjct: 276 KELGLWKNQISD--ITPLWQLTNLTKLNIQENKIIDIKA--LANLTNLTYLNAAGNPIQN 331



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 121/256 (47%), Gaps = 50/256 (19%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---LMKLE 61
           LS L+NLT L    NN      +K  A LINL +L L      +  L ++KG   L KLE
Sbjct: 115 LSKLTNLTKLYLDSNNI---SQVKELANLINLTELSLS-----YNQLSHVKGITNLTKLE 166

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            LN+   N ITD  ++PL+ LTNL  LQ+S +++    I  L  L  LT L         
Sbjct: 167 YLNLH-RNQITD--IRPLANLTNLIKLQLSSNQI--ESIKPLSKLNNLTEL--------- 212

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
                      + Y N        +  ++ + + +LK LN+G N I++  +  L  LTNL
Sbjct: 213 -----------IVYQN------KINEVKEITNLINLKYLNIGKNNISN--VKPLWELTNL 253

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L ++   I +  +  L  L NLK L L   Q+  S +  L  LTNL  +N+    I D
Sbjct: 254 IELYINENKISN--IETLADLSNLKELGLWKNQI--SDITPLWQLTNLTKLNIQENKIID 309

Query: 242 GSLRKLAGLSSLKSLN 257
             ++ LA L++L  LN
Sbjct: 310 --IKALANLTNLTYLN 323


>gi|441432501|ref|YP_007354543.1| hypothetical protein Moumou_00581 [Acanthamoeba polyphaga
           moumouvirus]
 gi|440383581|gb|AGC02107.1| hypothetical protein Moumou_00581 [Acanthamoeba polyphaga
           moumouvirus]
          Length = 488

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 194/442 (43%), Gaps = 99/442 (22%)

Query: 36  LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 95
           + +L+L++C  I G     K L  ++ +NI WC  + +S+   L  L N+  + +S S +
Sbjct: 64  IYELNLKKCNNITG--TGFKYLKNIKKINISWCRKLINSE---LQYLNNVIKINLSRSNI 118

Query: 96  TDSGIAY----------LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 145
            D G+ Y          L     +  +NL    +T +   S+  L ++  + +N C   D
Sbjct: 119 NDEGMKYLLFGKNEIDNLIPRNNIKQINLSNTNITNS---SVKLLSNIPVIKINYCPHID 175

Query: 146 DGC-EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC 203
             C E  S + SL +     +   + C  +LK L N+E L L++   IG      L  L 
Sbjct: 176 ASCLEYLSTVNSLSI-RTTIDRDPNLC-QNLKYLKNIEILKLNTGQLIGQH----LNYLN 229

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-----------------------GIS 240
           NLK L+  ++Q+    L+    L  LE ++L F                        GI+
Sbjct: 230 NLKVLDAQNSQI---ELKDFDFLKKLEYLSLRFNDYIDYFDIINFTNLRVLKLPHCPGIN 286

Query: 241 DGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNF 298
           D  L+    L  L+ +NL    +IT++GL  L ++     +++ G   ITD G  +LR  
Sbjct: 287 DNCLK---NLGRLEKINLKRCLEITNSGLEHLNNIKN---VNISGCLNITDEGLKHLRKA 340

Query: 299 KNLRSLEICGGGLTDAGVKHIK----------DLSSLTLLNLSQ-------NCNLTDKTL 341
           K + ++  C  G+TD G+K++K          D+  +TL+            C +   + 
Sbjct: 341 KKI-NIRYC-YGITDNGLKYLKNVEKIKIGYHDMFDITLIEFDHCTSHEINYCEIVRNSS 398

Query: 342 ELISGLTGLVSL-NVSN------SRITSAGLRH-------LKPLKNLRSLTLE-----SC 382
           + I+ L GL  L NVS+      + IT  GL H       LK   N++   LE     + 
Sbjct: 399 QNITNL-GLAYLHNVSSLKLKKCNNITDEGLIHLSIYNLELKYCNNIKGKFLEHLKNANI 457

Query: 383 KVTANDIKRLQSRDLPNLVSFR 404
           K+  N+IKR  S+++PN+   R
Sbjct: 458 KIFGNNIKREYSKNIPNIKFVR 479



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 142/335 (42%), Gaps = 75/335 (22%)

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL------KVLNLGFNEITDECLVH----- 174
           +LS +GS+ YLNL+   +SD+  +  S I  L       +   GF  + +   ++     
Sbjct: 36  NLSLIGSIKYLNLSHTNISDNHLQLLSDIYELNLKKCNNITGTGFKYLKNIKKINISWCR 95

Query: 175 ------LKGLTNLESLNLDSCGIGDEGLV----------NLTGLCNLKCLELSDTQVGSS 218
                 L+ L N+  +NL    I DEG+           NL    N+K + LS+T + +S
Sbjct: 96  KLINSELQYLNNVIKINLSRSNINDEGMKYLLFGKNEIDNLIPRNNIKQINLSNTNITNS 155

Query: 219 GLRHLSG-------------------LTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL 258
            ++ LS                    L+ + S+++  T   D +L + L  L +++ L L
Sbjct: 156 SVKLLSNIPVIKINYCPHIDASCLEYLSTVNSLSIRTTIDRDPNLCQNLKYLKNIEILKL 215

Query: 259 DARQITDTGLAALTSLT---------------GLTHLDLFGARITDSGAAY-LRNFKNLR 302
           +  Q+    L  L +L                 L  L+    R  D    + + NF NLR
Sbjct: 216 NTGQLIGQHLNYLNNLKVLDAQNSQIELKDFDFLKKLEYLSLRFNDYIDYFDIINFTNLR 275

Query: 303 SLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RI 360
            L++    G+ D     +K+L  L  +NL +   +T+  LE    L  + ++N+S    I
Sbjct: 276 VLKLPHCPGINDNC---LKNLGRLEKINLKRCLEITNSGLE---HLNNIKNVNISGCLNI 329

Query: 361 TSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQS 394
           T  GL+HL+  K    + +  C  +T N +K L++
Sbjct: 330 TDEGLKHLRKAK---KINIRYCYGITDNGLKYLKN 361


>gi|219821285|gb|ACL37768.1| internalin A [Listeria monocytogenes]
 gi|219821315|gb|ACL37788.1| internalin A [Listeria monocytogenes]
 gi|219821321|gb|ACL37792.1| internalin A [Listeria monocytogenes]
 gi|219821327|gb|ACL37796.1| internalin A [Listeria monocytogenes]
 gi|219821345|gb|ACL37808.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 159/348 (45%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L++  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTSLDVANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L    I +  +  + GL  L  LEL + Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELELGYNQISN--ISPIEGLTALTSLELHENQL--EDISPISNLKNLTYLTLYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT ++ L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAAHNQISD--LTPLANLTRISELG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 177/364 (48%), Gaps = 62/364 (17%)

Query: 26  GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD----SDMKPLSG 81
           G+K+  GL  L  L     T+I+ G   L  +  L+ L  K  + + +    +D+ PL+ 
Sbjct: 29  GIKSIDGLEYLNNL-----TQINFGFNQLTDITPLKDL-TKLVDIVMNNNQITDISPLAN 82

Query: 82  LTNLKSLQISCSKVTD--------------------SGIAYLKGLQKLTLLNLEGCPVTA 121
           LTNL  L +  +++TD                    S I+ L GL  L  L+  G  VT 
Sbjct: 83  LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTNLQQLSF-GNQVT- 140

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             L  L+ L +L  L+++  ++SD      +K+ +L+ L    N+I+D  +  L  LTNL
Sbjct: 141 -DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           + L+L+   + D G   L  L NL  L++++ Q+  S L  LSGLT L  + L +  IS+
Sbjct: 196 DELSLNGNQLKDIG--TLASLTNLTSLDVANNQI--SNLAPLSGLTKLTELELGYNQISN 251

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             +  + GL++L SL L   Q+ D  ++ +++L  LT+L L+   I+D   + + +   L
Sbjct: 252 --ISPIEGLTALTSLELHENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKL 305

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           + L      ++D  V  + +L+++  L+ + N          IS LT L +L    +RI+
Sbjct: 306 QRLFFYNNKVSD--VSSLANLTNINWLSAAHNQ---------ISDLTPLANL----TRIS 350

Query: 362 SAGL 365
             GL
Sbjct: 351 ELGL 354


>gi|147852997|emb|CAN79070.1| hypothetical protein VITISV_031965 [Vitis vinifera]
          Length = 661

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 138/309 (44%), Gaps = 1/309 (0%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +  LT L  L +S +++TD     +  L KLT L+L    +T      +  L  L YLNL
Sbjct: 115 IGSLTKLTILDLSHNQLTDPIPHQIGSLTKLTHLDLSFNQLTGPIPHQIGTLTELTYLNL 174

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           +   L+D       ++  L  L+L FN++T      +  LT L  L L S  + D    +
Sbjct: 175 SSNVLTDVIPSSLGRLTKLTHLDLSFNQLTGPIPHQIGTLTELTYLPLSSNVLTDVIPSS 234

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L  L  L  L+L   ++  S    +  LT L  ++LS   ++   L ++  L  L  L  
Sbjct: 235 LGRLTKLTHLDLYCNKLIGSIPHQIGSLTKLTHLDLSSNQLTGPILNQIGTLIELTYLEF 294

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318
              ++T    ++L  LT LTHL LF  ++  S    +     L  L I G  LT A    
Sbjct: 295 SGNELTGVIPSSLGRLTKLTHLGLFYNQLNGSIPHQIGTLTELTYLHISGNELTGAMPSS 354

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378
           +  L+ L  L+L +N  +       I  +  LV+L++S++ I+      LK LK L  L 
Sbjct: 355 LGCLTKLISLDLCKN-QINGSIPPEIGNIKSLVTLDLSDNLISGEIPSSLKNLKKLGRLD 413

Query: 379 LESCKVTAN 387
           L   +++ N
Sbjct: 414 LSYNRLSGN 422



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 125/287 (43%), Gaps = 12/287 (4%)

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           D + +L  L  L+L+  QL+D    +   +  L  L+L FN++T      +  LT L  L
Sbjct: 113 DQIGSLTKLTILDLSHNQLTDPIPHQIGSLTKLTHLDLSFNQLTGPIPHQIGTLTELTYL 172

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           NL S  + D    +L  L  L  L+LS  Q+       +  LT L  + LS   ++D   
Sbjct: 173 NLSSNVLTDVIPSSLGRLTKLTHLDLSFNQLTGPIPHQIGTLTELTYLPLSSNVLTDVIP 232

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
             L  L+ L  L+L   ++  +    + SLT LTHLDL   ++T      +     L  L
Sbjct: 233 SSLGRLTKLTHLDLYCNKLIGSIPHQIGSLTKLTHLDLSSNQLTGPILNQIGTLIELTYL 292

Query: 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
           E  G  LT      +  L+ LT L L  N  L       I  LT L  L++S + +T A 
Sbjct: 293 EFSGNELTGVIPSSLGRLTKLTHLGLFYN-QLNGSIPHQIGTLTELTYLHISGNELTGAM 351

Query: 365 LRHLKPLKNLRSLTLESCKVTAN--------DIKRLQSRDLP-NLVS 402
              L  L  L SL L  CK   N        +IK L + DL  NL+S
Sbjct: 352 PSSLGCLTKLISLDL--CKNQINGSIPPEIGNIKSLVTLDLSDNLIS 396



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 1/277 (0%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
           L KL  L++ + N +T      +  LT L  L +S + +TD   + L  L KLT L+L  
Sbjct: 142 LTKLTHLDLSF-NQLTGPIPHQIGTLTELTYLNLSSNVLTDVIPSSLGRLTKLTHLDLSF 200

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +T      +  L  L YL L+   L+D       ++  L  L+L  N++       + 
Sbjct: 201 NQLTGPIPHQIGTLTELTYLPLSSNVLTDVIPSSLGRLTKLTHLDLYCNKLIGSIPHQIG 260

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LT L  L+L S  +    L  +  L  L  LE S  ++       L  LT L  + L +
Sbjct: 261 SLTKLTHLDLSSNQLTGPILNQIGTLIELTYLEFSGNELTGVIPSSLGRLTKLTHLGLFY 320

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             ++     ++  L+ L  L++   ++T    ++L  LT L  LDL   +I  S    + 
Sbjct: 321 NQLNGSIPHQIGTLTELTYLHISGNELTGAMPSSLGCLTKLISLDLCKNQINGSIPPEIG 380

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           N K+L +L++    ++      +K+L  L  L+LS N
Sbjct: 381 NIKSLVTLDLSDNLISGEIPSSLKNLKKLGRLDLSYN 417


>gi|219821324|gb|ACL37794.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 159/348 (45%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 80  LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 134

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 135 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 183

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L++  N+I++  L  L GLT L
Sbjct: 184 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTSLDVANNQISN--LAPLSGLTKL 239

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L    I +  +  + GL  L  LEL + Q+    +  +S L NL  + L F  ISD
Sbjct: 240 TELELGYNQISN--ISPIAGLTALTSLELHENQL--EDISPISNLKNLTYLALYFNNISD 295

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT ++ L 
Sbjct: 296 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAAHNQISD--LTPLANLTRISELG 353

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 354 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 177/364 (48%), Gaps = 62/364 (17%)

Query: 26  GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD----SDMKPLSG 81
           G+K+  GL  L  L     T+I+ G   L  +  L+ L  K  + + +    +D+ PL+ 
Sbjct: 29  GIKSIDGLEYLNNL-----TQINFGFNQLTDITPLKDL-TKLVDIVMNNNQITDISPLAN 82

Query: 82  LTNLKSLQISCSKVTD--------------------SGIAYLKGLQKLTLLNLEGCPVTA 121
           LTNL  L +  +++TD                    S I+ L GL  L  L+  G  VT 
Sbjct: 83  LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTNLQQLSF-GNQVT- 140

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             L  L+ L +L  L+++  ++SD      +K+ +L+ L    N+I+D  +  L  LTNL
Sbjct: 141 -DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           + L+L+   + D G   L  L NL  L++++ Q+  S L  LSGLT L  + L +  IS+
Sbjct: 196 DELSLNGNQLKDIG--TLASLTNLTSLDVANNQI--SNLAPLSGLTKLTELELGYNQISN 251

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             +  +AGL++L SL L   Q+ D  ++ +++L  LT+L L+   I+D     + +   L
Sbjct: 252 --ISPIAGLTALTSLELHENQLED--ISPISNLKNLTYLALYFNNISDISP--VSSLTKL 305

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           + L      ++D  V  + +L+++  L+ + N          IS LT L +L    +RI+
Sbjct: 306 QRLFFYNNKVSD--VSSLANLTNINWLSAAHNQ---------ISDLTPLANL----TRIS 350

Query: 362 SAGL 365
             GL
Sbjct: 351 ELGL 354


>gi|241575665|ref|XP_002403227.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
 gi|215502182|gb|EEC11676.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
          Length = 411

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 161/352 (45%), Gaps = 75/352 (21%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 106
           ++G+  LE+LN+  C  +TD+ +    +  + +L  L +S C ++TD+ +     +LKGL
Sbjct: 91  IQGVPNLEALNMIGCFNLTDTWLSHAFVQDVHSLSELNLSMCKQITDNSLGRIAQHLKGL 150

Query: 107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
           ++L L                                   GC   S  G L V       
Sbjct: 151 ERLDL----------------------------------GGCSNVSNTGLLLV------- 169

Query: 167 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC--------NLKCLELSDTQ-VG 216
                     GL NL SLNL SC G+ D G+ +L G+          L+ L L D Q + 
Sbjct: 170 --------AWGLKNLRSLNLRSCRGVSDPGIGHLAGMTPEAAHGTLRLEALCLQDCQKLT 221

Query: 217 SSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS 273
              LR +S GL +L S+NLSF   ++D  L+  A +  L+ LNL +   I+D GLA L  
Sbjct: 222 DDALRFVSLGLADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAE 281

Query: 274 -LTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLN 329
             + L  LD+ F  ++ D G  +  +    LRSL +    ++D G+  + + L  L  L+
Sbjct: 282 GGSRLCALDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVARSLGDLHTLH 341

Query: 330 LSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
           L Q   +TDK L LI+  L  L  +++   ++IT+ GL  L  L +L  L L
Sbjct: 342 LGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLERLMQLPHLGVLNL 393



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 40/245 (16%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVNLK--G 56
           GL NL SL+ R    ++  G+   AG+        + L  L L+ C ++    +     G
Sbjct: 172 GLKNLRSLNLRSCRGVSDPGIGHLAGMTPEAAHGTLRLEALCLQDCQKLTDDALRFVSLG 231

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNL 114
           L  L SLN+ +C  +TD+ +K  + +  L+ L + SC  ++D G+AYL +G  +L  L++
Sbjct: 232 LADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAEGGSRLCALDV 291

Query: 115 EGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
             C        L +   L  L  L+LN C +SDDG  + +                    
Sbjct: 292 SFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVA-------------------- 331

Query: 173 VHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 229
              + L +L +L+L  CG + D+GL  +   L  L+C++L   T++ + GL  L  L +L
Sbjct: 332 ---RSLGDLHTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLERLMQLPHL 388

Query: 230 ESINL 234
             +NL
Sbjct: 389 GVLNL 393



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 98/184 (53%), Gaps = 30/184 (16%)

Query: 223 LSGLTNLESIN------LSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-L 274
           + G+ NLE++N      L+ T +S   ++ +    SL  LNL   +QITD  L  +   L
Sbjct: 91  IQGVPNLEALNMIGCFNLTDTWLSHAFVQDV---HSLSELNLSMCKQITDNSLGRIAQHL 147

Query: 275 TGLTHLDLFG-ARITDSG---AAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLS----- 323
            GL  LDL G + ++++G    A+    KNLRSL +  C G ++D G+ H+  ++     
Sbjct: 148 KGLERLDLGGCSNVSNTGLLLVAW--GLKNLRSLNLRSCRG-VSDPGIGHLAGMTPEAAH 204

Query: 324 -SLTLLNLS-QNCN-LTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 378
            +L L  L  Q+C  LTD  L  +S GL  L SLN+S  + +T AGL+H   +  LR L 
Sbjct: 205 GTLRLEALCLQDCQKLTDDALRFVSLGLADLRSLNLSFCASVTDAGLKHAARMPRLRELN 264

Query: 379 LESC 382
           L SC
Sbjct: 265 LRSC 268



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 122/246 (49%), Gaps = 34/246 (13%)

Query: 175 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 225
           ++G+ NLE+LN+  C       +    + ++  L  L    C +++D  +G    +HL G
Sbjct: 91  IQGVPNLEALNMIGCFNLTDTWLSHAFVQDVHSLSELNLSMCKQITDNSLGRIA-QHLKG 149

Query: 226 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----G 276
           L  L+     N+S TG+    L    GL +L+SLNL + R ++D G+  L  +T     G
Sbjct: 150 LERLDLGGCSNVSNTGL----LLVAWGLKNLRSLNLRSCRGVSDPGIGHLAGMTPEAAHG 205

Query: 277 LTHLDLFG----ARITDSGAAYLR-NFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLN 329
              L+        ++TD    ++     +LRSL +  C   +TDAG+KH   +  L  LN
Sbjct: 206 TLRLEALCLQDCQKLTDDALRFVSLGLADLRSLNLSFCAS-VTDAGLKHAARMPRLRELN 264

Query: 330 LSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 386
           L    N++D  L  L  G + L +L+VS   ++   GL H  + L  LRSL+L +C V+ 
Sbjct: 265 LRSCDNISDLGLAYLAEGGSRLCALDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSD 324

Query: 387 NDIKRL 392
           + I R+
Sbjct: 325 DGIGRV 330


>gi|299066812|emb|CBJ38006.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
           solanacearum CMR15]
          Length = 369

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 137/280 (48%), Gaps = 5/280 (1%)

Query: 101 AYLKGLQK-LTLLNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
           AYL+GL   L  L+L  C  P+TAA +  L AL  L  L+++ C L  +     +   +L
Sbjct: 42  AYLQGLPASLKALDLSRCEGPITAAGIAHLLAL-PLVRLDVSGCGLDAESARLLASHRTL 100

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
             LN+  N I D   + L   T L  LN+DS GIG  G   L     LK L++S+ ++G 
Sbjct: 101 TELNIRRNAIGDAGAIALAANTKLTKLNVDSNGIGAVGACALAAAVQLKTLDISNNRIGD 160

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
           +G R L+  T L  ++    GI     + LA   +L  L+L   +I   G  AL     L
Sbjct: 161 AGARALADNTRLTELDAGDCGIGPEGAQALAASQTLTRLDLRYNEIGVEGAEALAENHQL 220

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
           T L++ G+ +   GAA L     L  L+I   G+ +AG       ++LT LN++ N  + 
Sbjct: 221 TSLNVCGSGLGSEGAALLAANATLTELDISSNGIGNAGAGAFGANATLTKLNVANN-GIE 279

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
              +  ++  T L +L++ N+RI  AG + L   + L +L
Sbjct: 280 GAGVRALAANTTLTTLHIGNNRIGDAGAQDLAVNRTLVTL 319



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 140/331 (42%), Gaps = 55/331 (16%)

Query: 53  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS-KVTDSGIAYLKGLQKLT 110
           ++ G + LE L +      TD+ ++ L    +LK+L +S C   +T +GIA+L  L  L 
Sbjct: 23  SVAGCLALERLTL--VGHFTDAYLQGLP--ASLKALDLSRCEGPITAAGIAHLLAL-PLV 77

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC------EKFSKIG--------- 155
            L++ GC + A     L++  +L  LN+ R  + D G        K +K+          
Sbjct: 78  RLDVSGCGLDAESARLLASHRTLTELNIRRNAIGDAGAIALAANTKLTKLNVDSNGIGAV 137

Query: 156 ---------SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
                     LK L++  N I D     L   T L  L+   CGIG EG   L     L 
Sbjct: 138 GACALAAAVQLKTLDISNNRIGDAGARALADNTRLTELDAGDCGIGPEGAQALAASQTLT 197

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGI-SDGSLRKLAGLS-------------- 251
            L+L   ++G  G   L+    L S+N+  +G+ S+G+    A  +              
Sbjct: 198 RLDLRYNEIGVEGAEALAENHQLTSLNVCGSGLGSEGAALLAANATLTELDISSNGIGNA 257

Query: 252 ---------SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
                    +L  LN+    I   G+ AL + T LT L +   RI D+GA  L   + L 
Sbjct: 258 GAGAFGANATLTKLNVANNGIEGAGVRALAANTTLTTLHIGNNRIGDAGAQDLAVNRTLV 317

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           +L+    G+ D G   +   + LT L+LS N
Sbjct: 318 TLDASANGIGDPGALALAANTKLTTLDLSVN 348



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 142/326 (43%), Gaps = 4/326 (1%)

Query: 5   LSGL-SNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           L GL ++L +L   R    ITA G+     L  LV+LD+  C         L     L  
Sbjct: 44  LQGLPASLKALDLSRCEGPITAAGIAHLLAL-PLVRLDVSGCGLDAESARLLASHRTLTE 102

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LNI+  N I D+    L+  T L  L +  + +   G   L    +L  L++    +  A
Sbjct: 103 LNIRR-NAIGDAGAIALAANTKLTKLNVDSNGIGAVGACALAAAVQLKTLDISNNRIGDA 161

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
              +L+    L  L+   C +  +G +  +   +L  L+L +NEI  E    L     L 
Sbjct: 162 GARALADNTRLTELDAGDCGIGPEGAQALAASQTLTRLDLRYNEIGVEGAEALAENHQLT 221

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLN+   G+G EG   L     L  L++S   +G++G         L  +N++  GI   
Sbjct: 222 SLNVCGSGLGSEGAALLAANATLTELDISSNGIGNAGAGAFGANATLTKLNVANNGIEGA 281

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            +R LA  ++L +L++   +I D G   L     L  LD     I D GA  L     L 
Sbjct: 282 GVRALAANTTLTTLHIGNNRIGDAGAQDLAVNRTLVTLDASANGIGDPGALALAANTKLT 341

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLL 328
           +L++    + +AG++ ++   +LT+L
Sbjct: 342 TLDLSVNRIGEAGMQALEASDTLTVL 367



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 137/304 (45%), Gaps = 5/304 (1%)

Query: 6   SGLSNLTSLSFRRNN----AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           +G+++L +L   R +     + A+  +  A    L +L++ R      G + L    KL 
Sbjct: 66  AGIAHLLALPLVRLDVSGCGLDAESARLLASHRTLTELNIRRNAIGDAGAIALAANTKLT 125

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            LN+   N I       L+    LK+L IS +++ D+G   L    +LT L+   C +  
Sbjct: 126 KLNVD-SNGIGAVGACALAAAVQLKTLDISNNRIGDAGARALADNTRLTELDAGDCGIGP 184

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
               +L+A  +L  L+L   ++  +G E  ++   L  LN+  + +  E    L     L
Sbjct: 185 EGAQALAASQTLTRLDLRYNEIGVEGAEALAENHQLTSLNVCGSGLGSEGAALLAANATL 244

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L++ S GIG+ G         L  L +++  +  +G+R L+  T L ++++    I D
Sbjct: 245 TELDISSNGIGNAGAGAFGANATLTKLNVANNGIEGAGVRALAANTTLTTLHIGNNRIGD 304

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
              + LA   +L +L+  A  I D G  AL + T LT LDL   RI ++G   L     L
Sbjct: 305 AGAQDLAVNRTLVTLDASANGIGDPGALALAANTKLTTLDLSVNRIGEAGMQALEASDTL 364

Query: 302 RSLE 305
             L+
Sbjct: 365 TVLK 368


>gi|51850137|dbj|BAD42410.1| leucine-rich repeat protein [Ralstonia solanacearum]
 gi|226237546|dbj|BAH47288.1| type III effector protein [Ralstonia solanacearum]
          Length = 493

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 129/271 (47%), Gaps = 1/271 (0%)

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           LT L++ G  +  A   +L+A  S+  L+ +   +   G    +   +L  L+LGFN I 
Sbjct: 190 LTALDIRGNGIGDAGAQALAANTSITSLDASFNDIGAAGARALAGNTTLTSLDLGFNAIG 249

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           DE L  L   T+L SL + SC IGD G   L     L  ++L+   +G  G   L+  T 
Sbjct: 250 DEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLTCNHIGEEGAEGLAANTV 309

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           L S++L+   ISD     LAG ++L SL ++   I   G   L   T L  LD+   RI 
Sbjct: 310 LTSLDLTRNSISDRGAAALAGNTALTSLCVNFNDIYGRGARWLAENTTLASLDIGENRIE 369

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
            +GA  L    ++  L I    + DAG + +    +LT L  S N  +    ++ ++  T
Sbjct: 370 AAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYASDNF-IGTAGVQALAANT 428

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
            L SL++  +RI  AG++ L     L  LT+
Sbjct: 429 RLTSLSIWGNRIGDAGVKALAANTTLTKLTI 459



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 125/276 (45%), Gaps = 1/276 (0%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L +L+I+  N I D+  + L+  T++ SL  S + +  +G   L G   LT L+L    +
Sbjct: 190 LTALDIR-GNGIGDAGAQALAANTSITSLDASFNDIGAAGARALAGNTTLTSLDLGFNAI 248

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
               L +L+   SL  L +  C++ D G    +   +L  ++L  N I +E    L   T
Sbjct: 249 GDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLTCNHIGEEGAEGLAANT 308

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
            L SL+L    I D G   L G   L  L ++   +   G R L+  T L S+++    I
Sbjct: 309 VLTSLDLTRNSISDRGAAALAGNTALTSLCVNFNDIYGRGARWLAENTTLASLDIGENRI 368

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
                + LA  +S+  LN++   I D G  AL +   LT L      I  +G   L    
Sbjct: 369 EAAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYASDNFIGTAGVQALAANT 428

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            L SL I G  + DAGVK +   ++LT L + +  +
Sbjct: 429 RLTSLSIWGNRIGDAGVKALAANTTLTKLTIGKRVD 464



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 25/242 (10%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 79
           NAI  +G++A A   +L  L +  C     G   L     L S+++  CN I +   + L
Sbjct: 246 NAIGDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLT-CNHIGEEGAEGL 304

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           +  T L SL ++ + ++D G A L G   LT L          C+            N N
Sbjct: 305 AANTVLTSLDLTRNSISDRGAAALAGNTALTSL----------CV------------NFN 342

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
              +   G    ++  +L  L++G N I       L   T++  LN++   IGD G   L
Sbjct: 343 --DIYGRGARWLAENTTLASLDIGENRIEAAGAQALAANTSITWLNINDNHIGDAGAQAL 400

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
                L  L  SD  +G++G++ L+  T L S+++    I D  ++ LA  ++L  L + 
Sbjct: 401 AAHPALTSLYASDNFIGTAGVQALAANTRLTSLSIWGNRIGDAGVKALAANTTLTKLTIG 460

Query: 260 AR 261
            R
Sbjct: 461 KR 462


>gi|289433761|ref|YP_003463633.1| hypothetical protein lse_0394 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170005|emb|CBH26545.1| leucine-rich repeat, cell wall anchor family protein [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 1770

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 114/424 (26%), Positives = 192/424 (45%), Gaps = 57/424 (13%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAG---LINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +GL ++T L+      I    + +  G   L N+  +DL         +  L  L K+ +
Sbjct: 139 AGLLSITQLNLSGETGIDETDIASIEGFQYLENVTSVDLSENNLTD--ITPLTDLTKIVT 196

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           LN+     +   D+  + GLTNL+ L +S C  + D  I+ +  L  L  ++ +GC +  
Sbjct: 197 LNLSSNQNL--EDLNGVEGLTNLQDLNVSTCKSLAD--ISPVAALPALKEISAQGCNIQT 252

Query: 122 ACL-----DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             L     D+L  L + FYL  N  Q         + +  LK L +  N  + E L  L 
Sbjct: 253 LELENPAGDALPELET-FYLQENDLQ----DLTALATLPKLKNLYIKGNS-SLESLETLN 306

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI-NLS 235
           G T+++ ++  +C    E + +++G+  L+ ++LS    G S L+ ++ L NL ++ N++
Sbjct: 307 GSTSIQLIDASNC-TDMETVGDISGITTLEMIQLS----GCSKLKEITDLKNLPNLTNIT 361

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
                   L  L  L  L++L L   +   T + A+  L  L  + L G  IT+ G   L
Sbjct: 362 ANNCIIEDLGTLENLPKLQTLILSGNE-NLTDVDAINDLPQLKTVALDGCGITNIGT--L 418

Query: 296 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDK 339
            N   L  L+I G  +TD  +  I DL  L+ L+ S+N                 N+++ 
Sbjct: 419 ENLPKLEKLDIKGNKVTD--ISEITDLPRLSYLDASENQLTTIGTLAKLPLLDWLNISEN 476

Query: 340 TLELISGLTGLVSL---NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 396
            L+ +S +    SL   NVSN+ IT+ G   +  L +L+    +  KVT  DI  +   D
Sbjct: 477 QLKDVSTINNFPSLNYINVSNNSITTFG--KMTELPSLKEFYGQFNKVT--DISMIH--D 530

Query: 397 LPNL 400
           +PNL
Sbjct: 531 MPNL 534



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 103/425 (24%), Positives = 187/425 (44%), Gaps = 57/425 (13%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+ + +L+   N  +  + +    GL NL  L++  C  +   +  +  L  L+ ++
Sbjct: 188 LTDLTKIVTLNLSSNQNL--EDLNGVEGLTNLQDLNVSTCKSL-ADISPVAALPALKEIS 244

Query: 65  IKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
            + CN  T     P    L  L++  +  + + D  +  L  L KL  L ++G   +   
Sbjct: 245 AQGCNIQTLELENPAGDALPELETFYLQENDLQD--LTALATLPKLKNLYIKGNS-SLES 301

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGLT 179
           L++L+   S+  ++ + C    +     S I +L+++ L       EITD     LK L 
Sbjct: 302 LETLNGSTSIQLIDASNCT-DMETVGDISGITTLEMIQLSGCSKLKEITD-----LKNLP 355

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           NL ++  ++C I D G   L  L  L+ L LS  +   + +  ++ L  L+++ L   GI
Sbjct: 356 NLTNITANNCIIEDLG--TLENLPKLQTLILSGNE-NLTDVDAINDLPQLKTVALDGCGI 412

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
           ++  +  L  L  L+ L++   ++TD  ++ +T L  L++LD    ++T  G   L    
Sbjct: 413 TN--IGTLENLPKLEKLDIKGNKVTD--ISEITDLPRLSYLDASENQLTTIGT--LAKLP 466

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC---------------------NLTD 338
            L  L I    L D  V  I +  SL  +N+S N                       +TD
Sbjct: 467 LLDWLNISENQLKD--VSTINNFPSLNYINVSNNSITTFGKMTELPSLKEFYGQFNKVTD 524

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 398
             + +I  +  L  LNVSN+ I + G    + L  L++L + S K+T   +      D P
Sbjct: 525 --ISMIHDMPNLRKLNVSNNLINNLGT--FENLPKLQNLDIHSNKITNTTV----IHDFP 576

Query: 399 NLVSF 403
           +L ++
Sbjct: 577 SLETY 581



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 91/338 (26%), Positives = 153/338 (45%), Gaps = 49/338 (14%)

Query: 93  SKVTDSGIAYLKGLQKLTLLNLEG----CPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 148
           +  T   +A   GL  +T LNL G         A ++    L ++  ++L+   L+D   
Sbjct: 128 ADATGDEVADSAGLLSITQLNLSGETGIDETDIASIEGFQYLENVTSVDLSENNLTD--I 185

Query: 149 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGL---- 202
              + +  +  LNL  N+  ++ L  ++GLTNL+ LN+ +C  + D   +  L  L    
Sbjct: 186 TPLTDLTKIVTLNLSSNQNLED-LNGVEGLTNLQDLNVSTCKSLADISPVAALPALKEIS 244

Query: 203 ---CNLKCLELSDTQ-----------VGSSGLRHLSGLTNLESI-NLSFTGISDGSLRKL 247
              CN++ LEL +             +  + L+ L+ L  L  + NL   G  + SL  L
Sbjct: 245 AQGCNIQTLELENPAGDALPELETFYLQENDLQDLTALATLPKLKNLYIKG--NSSLESL 302

Query: 248 AGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL-- 304
             L+   S+ L DA   TD  +  +  ++G+T L++    I  SG + L+   +L++L  
Sbjct: 303 ETLNGSTSIQLIDASNCTD--METVGDISGITTLEM----IQLSGCSKLKEITDLKNLPN 356

Query: 305 --EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
              I         +  +++L  L  L LS N NLTD  ++ I+ L  L ++ +    IT+
Sbjct: 357 LTNITANNCIIEDLGTLENLPKLQTLILSGNENLTD--VDAINDLPQLKTVALDGCGITN 414

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
            G   L+ L  L  L ++  KVT  DI  +   DLP L
Sbjct: 415 IGT--LENLPKLEKLDIKGNKVT--DISEIT--DLPRL 446


>gi|290979250|ref|XP_002672347.1| predicted protein [Naegleria gruberi]
 gi|284085923|gb|EFC39603.1| predicted protein [Naegleria gruberi]
          Length = 356

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 129/280 (46%), Gaps = 32/280 (11%)

Query: 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161
           +L  + ++T+ N    P   A +  L A+  L  L+++  ++  +G     ++ +L  L+
Sbjct: 76  FLDNIMEVTVEN----PGLIADVRFLQAVKKLTRLSIDYNRVGVEGASFIGEMKNLTSLS 131

Query: 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 221
           + FN I  E    +  L NL SL ++   +G EG  +++ L  L CL++S   +G  G +
Sbjct: 132 ILFNGIGPEGAKSISKLENLTSLFINVNQLGSEGTKSISELKQLTCLDISGNHLGPEGTK 191

Query: 222 HLSGLTNLES------------------------INLSFTGISDGSLRKLAGLSSLKSLN 257
           ++  LT L                          +N+S+  I     + L+ +  L +L 
Sbjct: 192 YIGKLTQLTQLIICNNEIYSERLKFIGELRQLTILNVSYNYIDSEGAKYLSEMKQLTTLR 251

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 316
           +D+  I   G  ++ +L  LT+L++    I D G   +    KNL+ L     G+ D G 
Sbjct: 252 IDSNNIGPEGAKSICTLQNLTNLNVDSNAIGDEGILSISEKMKNLKYLNASMNGIGDEGA 311

Query: 317 KHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNV 355
           + I  ++ LT LN+S  CN + +  L+L  G+  LV L +
Sbjct: 312 QSILSMTQLTNLNIS--CNKIGENVLKLFGGMKQLVILEI 349



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 108/237 (45%)

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
           +  L  L++ +N +  E    +  + NL SL++   GIG EG  +++ L NL  L ++  
Sbjct: 100 VKKLTRLSIDYNRVGVEGASFIGEMKNLTSLSILFNGIGPEGAKSISKLENLTSLFINVN 159

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
           Q+GS G + +S L  L  +++S   +     + +  L+ L  L +   +I    L  +  
Sbjct: 160 QLGSEGTKSISELKQLTCLDISGNHLGPEGTKYIGKLTQLTQLIICNNEIYSERLKFIGE 219

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           L  LT L++    I   GA YL   K L +L I    +   G K I  L +LT LN+  N
Sbjct: 220 LRQLTILNVSYNYIDSEGAKYLSEMKQLTTLRIDSNNIGPEGAKSICTLQNLTNLNVDSN 279

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 390
               +  L +   +  L  LN S + I   G + +  +  L +L +   K+  N +K
Sbjct: 280 AIGDEGILSISEKMKNLKYLNASMNGIGDEGAQSILSMTQLTNLNISCNKIGENVLK 336



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 15/235 (6%)

Query: 56  GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           G MK L SL+I + N I     K +S L NL SL I+ +++   G   +  L++LT L++
Sbjct: 122 GEMKNLTSLSILF-NGIGPEGAKSISKLENLTSLFINVNQLGSEGTKSISELKQLTCLDI 180

Query: 115 EG---CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK---VLNLGFNEIT 168
            G    P     +  L+ L  L   N      ++   E+   IG L+   +LN+ +N I 
Sbjct: 181 SGNHLGPEGTKYIGKLTQLTQLIICN------NEIYSERLKFIGELRQLTILNVSYNYID 234

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLT 227
            E   +L  +  L +L +DS  IG EG  ++  L NL  L +    +G  G+  +S  + 
Sbjct: 235 SEGAKYLSEMKQLTTLRIDSNNIGPEGAKSICTLQNLTNLNVDSNAIGDEGILSISEKMK 294

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           NL+ +N S  GI D   + +  ++ L +LN+   +I +  L     +  L  L++
Sbjct: 295 NLKYLNASMNGIGDEGAQSILSMTQLTNLNISCNKIGENVLKLFGGMKQLVILEI 349



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 3/230 (1%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           + NLTSLS   N  I  +G K+ + L NL  L +        G  ++  L +L  L+I  
Sbjct: 124 MKNLTSLSILFN-GIGPEGAKSISKLENLTSLFINVNQLGSEGTKSISELKQLTCLDIS- 181

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N +     K +  LT L  L I  +++    + ++  L++LT+LN+    + +     L
Sbjct: 182 GNHLGPEGTKYIGKLTQLTQLIICNNEIYSERLKFIGELRQLTILNVSYNYIDSEGAKYL 241

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNL 186
           S +  L  L ++   +  +G +    + +L  LN+  N I DE ++ + + + NL+ LN 
Sbjct: 242 SEMKQLTTLRIDSNNIGPEGAKSICTLQNLTNLNVDSNAIGDEGILSISEKMKNLKYLNA 301

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
              GIGDEG  ++  +  L  L +S  ++G + L+   G+  L  + + F
Sbjct: 302 SMNGIGDEGAQSILSMTQLTNLNISCNKIGENVLKLFGGMKQLVILEIGF 351



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 113/254 (44%), Gaps = 2/254 (0%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113
           L+ + KL  L+I + N +       +  + NL SL I  + +   G   +  L+ LT L 
Sbjct: 97  LQAVKKLTRLSIDY-NRVGVEGASFIGEMKNLTSLSILFNGIGPEGAKSISKLENLTSLF 155

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
           +    + +    S+S L  L  L+++   L  +G +   K+  L  L +  NEI  E L 
Sbjct: 156 INVNQLGSEGTKSISELKQLTCLDISGNHLGPEGTKYIGKLTQLTQLIICNNEIYSERLK 215

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            +  L  L  LN+    I  EG   L+ +  L  L +    +G  G + +  L NL ++N
Sbjct: 216 FIGELRQLTILNVSYNYIDSEGAKYLSEMKQLTTLRIDSNNIGPEGAKSICTLQNLTNLN 275

Query: 234 LSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
           +    I D G L     + +LK LN     I D G  ++ S+T LT+L++   +I ++  
Sbjct: 276 VDSNAIGDEGILSISEKMKNLKYLNASMNGIGDEGAQSILSMTQLTNLNISCNKIGENVL 335

Query: 293 AYLRNFKNLRSLEI 306
                 K L  LEI
Sbjct: 336 KLFGGMKQLVILEI 349


>gi|71668063|ref|XP_820975.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70886340|gb|EAN99124.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 930

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 176/423 (41%), Gaps = 81/423 (19%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHG-------------------------GLVNL 54
           +++T   + A      L KLDL+ C RI                           GLV L
Sbjct: 425 SSVTDDSLTALRFCPELAKLDLQWCGRITSLMCLVGALCDSLRELNLTETSVTDEGLVPL 484

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           K    LE ++++ C  ++D ++  L  LT L+ + +  ++VT+ G+  L   Q L ++ +
Sbjct: 485 KDFAALEWISLEGCGAVSDVNV--LCNLTRLREVDVGRTRVTNRGVVSLSQCQALRVMRM 542

Query: 115 EGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
             C  +T A  + L AL  L  ++L+ C ++++G        SL+ L L      ++ + 
Sbjct: 543 RQCYRLTDA--NFLGALQQLEEVDLSDCPVTNEGIAALFGARSLRKLRLQSCHAVND-VN 599

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTG-------------------------LCNLKCL 208
            L GL +L  L+L    + +EG V L                           L  LK L
Sbjct: 600 FLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMHSVLVHSLQQWNAALFLPRLKRL 659

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINL-----------------SFTGISDGSLRKLAGLS 251
           +LS T+V S  L  L     LE+++L                 S TG+     R +    
Sbjct: 660 DLSTTKVTSDALSFLRMCPVLETLSLRGCKNITHLDFLILQPSSGTGVCAIVPRDVEPHD 719

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           ++  +     +  D G + + ++T    +      I  +  A + +   LR L + G G+
Sbjct: 720 TVGDIIAGKEKNPDDGPSPIETMTTNDGV------IKSTAVAAVVSRHRLRELTLSGTGV 773

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
           TD G++ ++    L  L L+   N TD  + ++  L+ L  L++S + +T +GL  L P 
Sbjct: 774 TDEGLRALQYCPGLERLRLAHCKNFTD--VAVLRWLSQLKELDLSATGVTGSGLAKLSPS 831

Query: 372 KNL 374
            NL
Sbjct: 832 GNL 834



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 180/413 (43%), Gaps = 34/413 (8%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           M  ++S L+ L+ LS      I  + ++    L  L  LDL   +     L  L+   +L
Sbjct: 384 MYRDVSKLNKLSRLSLEGCRKI--ESLQWLRALNQLRVLDLGYSSVTDDSLTALRFCPEL 441

Query: 61  ESLNIKWCNCITDSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
             L+++WC  IT S M  +  L + L+ L ++ + VTD G+  LK    L  ++LEGC  
Sbjct: 442 AKLDLQWCGRIT-SLMCLVGALCDSLRELNLTETSVTDEGLVPLKDFAALEWISLEGCGA 500

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 178
            +  ++ L  L  L  +++ R ++++ G    S+  +L+V+ +     +TD     L  L
Sbjct: 501 VSD-VNVLCNLTRLREVDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGAL 557

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
             LE ++L  C + +EG+  L G  +L+ L L       + +  L GL +L  ++L  T 
Sbjct: 558 QQLEEVDLSDCPVTNEGIAALFGARSLRKLRLQSCH-AVNDVNFLGGLEHLMLLDLHHTT 616

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
           + +     LA    L +L + +  +       A   L  L  LDL   ++T    ++LR 
Sbjct: 617 VDEEGSVGLAQCPQLMTLIMHSVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRM 676

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN--CNLTDKTLE-------LIS--- 345
              L +L +        G K+I  L  L L   S    C +  + +E       +I+   
Sbjct: 677 CPVLETLSL-------RGCKNITHLDFLILQPSSGTGVCAIVPRDVEPHDTVGDIIAGKE 729

Query: 346 -----GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
                G + + ++  ++  I S  +  +     LR LTL    VT   ++ LQ
Sbjct: 730 KNPDDGPSPIETMTTNDGVIKSTAVAAVVSRHRLRELTLSGTGVTDEGLRALQ 782



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 145/332 (43%), Gaps = 38/332 (11%)

Query: 82  LTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
           L  L+ L +S ++VT+ G+   +  L KL+ L+LEGC    + L  L AL  L  L+L  
Sbjct: 366 LCALRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGCRKIES-LQWLRALNQLRVLDLGY 424

Query: 141 CQLSDDG------CEKFSKIG-------------------SLKVLNLGFNEITDECLVHL 175
             ++DD       C + +K+                    SL+ LNL    +TDE LV L
Sbjct: 425 SSVTDDSLTALRFCPELAKLDLQWCGRITSLMCLVGALCDSLRELNLTETSVTDEGLVPL 484

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQVGSSGLRHLSGLTNLESI 232
           K    LE ++L+ CG     + ++  LCNL  L   D   T+V + G+  LS    L  +
Sbjct: 485 KDFAALEWISLEGCG----AVSDVNVLCNLTRLREVDVGRTRVTNRGVVSLSQCQALRVM 540

Query: 233 NL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
            +     ++D +   L  L  L+ ++L    +T+ G+AAL     L  L L      +  
Sbjct: 541 RMRQCYRLTDANF--LGALQQLEEVDLSDCPVTNEGIAALFGARSLRKLRLQSCHAVND- 597

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
             +L   ++L  L++    + + G   +     L  L +      + +       L  L 
Sbjct: 598 VNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMHSVLVHSLQQWNAALFLPRLK 657

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
            L++S +++TS  L  L+    L +L+L  CK
Sbjct: 658 RLDLSTTKVTSDALSFLRMCPVLETLSLRGCK 689


>gi|158429244|pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
          Length = 462

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 172/365 (47%), Gaps = 64/365 (17%)

Query: 4   NLSGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           +++ L NLT L      NN I    +   A L NL  L     T  +  + ++  L  L 
Sbjct: 77  DITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGL-----TLFNNQITDIDPLKNLT 129

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +LN    +  T SD+  LSGLT+L+ L  S ++VTD     LK L  LT   LE   +++
Sbjct: 130 NLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD-----LKPLANLT--TLERLDISS 182

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             +  +S L                   K + + SL   N   N+I+D  +  L  LTNL
Sbjct: 183 NKVSDISVLA------------------KLTNLESLIATN---NQISD--ITPLGILTNL 219

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           + L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  + L    IS+
Sbjct: 220 DELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN 275

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             +  LAGL++L +L L+  Q+ D  ++ +++L  LT+L L+   I+D   + + +   L
Sbjct: 276 --ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKL 329

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           + L      ++D  V  + +L+++  L+   N          IS LT L +L    +RIT
Sbjct: 330 QRLFFSNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPLANL----TRIT 374

Query: 362 SAGLR 366
             GL 
Sbjct: 375 QLGLN 379



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 127/270 (47%), Gaps = 55/270 (20%)

Query: 146 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 57  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+  + Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTD 165

Query: 266 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 305
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 166 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 362
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 224 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 278

Query: 363 -AG-------------LRHLKPLKNLRSLT 378
            AG             L  + P+ NL++LT
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLT 308


>gi|334121440|ref|ZP_08495509.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
           FGP-2]
 gi|333455058|gb|EGK83722.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
           FGP-2]
          Length = 336

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 133/260 (51%), Gaps = 26/260 (10%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           SD+ PL  LTNLK+L +  ++++D  I+ L  L  L+ L L+   ++      +S L  L
Sbjct: 80  SDLAPLQSLTNLKTLIMDVNQISD--ISPLSSLINLSQLVLDTNQIS-----DISPLAGL 132

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLN---LGFNEITDECLVHLKGLTNLESLNLDSCG 190
              NL    L D+     + + +L  LN   L  N+I+D  L  L  LT L++L L +  
Sbjct: 133 --TNLTALVLFDNKISDITPLQALTNLNALILYNNQISD--LAPLTNLTALDTLYLYNNK 188

Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 250
           I D  +  L+ L NL  L L   ++  S +  L+ LTNL  + L    ISD S   L  L
Sbjct: 189 ISD--ITRLSSLKNLTTLFLFGNKI--SDITPLASLTNLNKLVLFQNQISDIS--PLTSL 242

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
           ++L  LNL   QI+D  ++ L SLT LT L LF   I+D+ A  L+   NL  L++    
Sbjct: 243 TNLIELNLGNNQISD--ISPLKSLTNLTELYLFNNPISDTSA--LQALNNLFLLDLYNNQ 298

Query: 311 LTDAGVKHIKDLSSLTLLNL 330
           ++D  +  ++ L  LT L+L
Sbjct: 299 ISD--ISSLQSLQKLTTLDL 316



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 145/299 (48%), Gaps = 36/299 (12%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLM------- 58
           LSN T L+ +         + +F  L NL+ L   R + +     L NLK L+       
Sbjct: 44  LSNTTELNLKNLQITDISPLSSFTKLTNLI-LGSNRISDLAPLQSLTNLKTLIMDVNQIS 102

Query: 59  ---KLESLNIKWCNCITD----SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 111
               L SL I     + D    SD+ PL+GLTNL +L +  +K++D  I  L+ L  L  
Sbjct: 103 DISPLSSL-INLSQLVLDTNQISDISPLAGLTNLTALVLFDNKISD--ITPLQALTNLNA 159

Query: 112 LNLEGCPVTA-ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
           L L    ++  A L +L+AL +L+  N    ++SD    + S + +L  L L  N+I+D 
Sbjct: 160 LILYNNQISDLAPLTNLTALDTLYLYN---NKISD--ITRLSSLKNLTTLFLFGNKISD- 213

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
            +  L  LTNL  L L    I D  +  LT L NL  L L + Q+  S +  L  LTNL 
Sbjct: 214 -ITPLASLTNLNKLVLFQNQISD--ISPLTSLTNLIELNLGNNQI--SDISPLKSLTNLT 268

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
            + L    ISD S   L  L++L  L+L   QI+D  +++L SL  LT LDL G  I +
Sbjct: 269 ELYLFNNPISDTS--ALQALNNLFLLDLYNNQISD--ISSLQSLQKLTTLDLRGNPIVN 323


>gi|158429246|pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
          Length = 462

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 172/365 (47%), Gaps = 64/365 (17%)

Query: 4   NLSGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           +++ L NLT L      NN I    +   A L NL  L     T  +  + ++  L  L 
Sbjct: 77  DITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGL-----TLFNNQITDIDPLKNLT 129

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +LN    +  T SD+  LSGLT+L+ L  S ++VTD     LK L  LT   LE   +++
Sbjct: 130 NLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-----LKPLANLT--TLERLDISS 182

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             +  +S L                   K + + SL   N   N+I+D  +  L  LTNL
Sbjct: 183 NKVSDISVLA------------------KLTNLESLIATN---NQISD--ITPLGILTNL 219

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           + L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  + L    IS+
Sbjct: 220 DELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN 275

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             +  LAGL++L +L L+  Q+ D  ++ +++L  LT+L L+   I+D   + + +   L
Sbjct: 276 --ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKL 329

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           + L      ++D  V  + +L+++  L+   N          IS LT L +L    +RIT
Sbjct: 330 QRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPLANL----TRIT 374

Query: 362 SAGLR 366
             GL 
Sbjct: 375 QLGLN 379



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 152/349 (43%), Gaps = 73/349 (20%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           ++  L NLT+L+                         LE  +     +  L GL  L+ L
Sbjct: 121 DIDPLKNLTNLN------------------------RLELSSNTISDISALSGLTSLQQL 156

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           N    N +T  D+KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   
Sbjct: 157 NFS-SNQVT--DLKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQ 206

Query: 124 LDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
           +  ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT 
Sbjct: 207 ISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 262

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  IS
Sbjct: 263 LTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNIS 318

Query: 241 D----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           D     SL K                LA L+++  L+    QI+D  L  L +LT +T L
Sbjct: 319 DISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQL 376

Query: 281 DLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
            L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 377 GLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 425



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 127/270 (47%), Gaps = 55/270 (20%)

Query: 146 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 57  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ LN  + Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTD 165

Query: 266 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 305
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 166 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 362
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 224 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 278

Query: 363 -AG-------------LRHLKPLKNLRSLT 378
            AG             L  + P+ NL++LT
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLT 308


>gi|384249607|gb|EIE23088.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
          Length = 484

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 21/172 (12%)

Query: 167 ITDECLVHLKGLTNLESLNLDSC----GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLR 221
           +TDE +  L  LTNL  L+L  C    G  D G   +     L+CL++S+ + +    L+
Sbjct: 286 VTDELVGQLAPLTNLRELSLRGCTGLTGAPDSGFARIAAFARLECLDISNCKLLQDDALK 345

Query: 222 ---HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGL 277
               L GL  L ++    T ++D +L KLA L  L  L+L     ITD G+AAL ++ GL
Sbjct: 346 VVGQLPGLRQLRAVGC--TALTDAALHKLAALQDLVQLDLGCNALITDAGIAALANMQGL 403

Query: 278 THLDLFG-ARITDSGAAYLRNFKNL------RSLEICGGGLTD--AGVKHIK 320
             ++L   A++T++G A L    NL      R   IC  G+ +  AG KH++
Sbjct: 404 EQVNLVSLAQVTNAGVAALDALPNLKRITVSRCARICESGMQEHFAG-KHLR 454



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL---DLERCTRIHGGLVNLKG-LMK 59
            L+ L+NL  LS R    +T      FA +    +L   D+  C  +    + + G L  
Sbjct: 293 QLAPLTNLRELSLRGCTGLTGAPDSGFARIAAFARLECLDISNCKLLQDDALKVVGQLPG 352

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEG-C 117
           L  L    C  +TD+ +  L+ L +L  L + C+  +TD+GIA L  +Q L  +NL    
Sbjct: 353 LRQLRAVGCTALTDAALHKLAALQDLVQLDLGCNALITDAGIAALANMQGLEQVNLVSLA 412

Query: 118 PVTAACLDSLSALGSLFYLNLNRC 141
            VT A + +L AL +L  + ++RC
Sbjct: 413 QVTNAGVAALDALPNLKRITVSRC 436



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 7/151 (4%)

Query: 239 ISDGSLRKLAGLSSLKSLNLDA----RQITDTGLAALTSLTGLTHLDLFGARI-TDSGAA 293
           ++D  + +LA L++L+ L+L          D+G A + +   L  LD+   ++  D    
Sbjct: 286 VTDELVGQLAPLTNLRELSLRGCTGLTGAPDSGFARIAAFARLECLDISNCKLLQDDALK 345

Query: 294 YLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
            +     LR L   G   LTDA +  +  L  L  L+L  N  +TD  +  ++ + GL  
Sbjct: 346 VVGQLPGLRQLRAVGCTALTDAALHKLAALQDLVQLDLGCNALITDAGIAALANMQGLEQ 405

Query: 353 LN-VSNSRITSAGLRHLKPLKNLRSLTLESC 382
           +N VS +++T+AG+  L  L NL+ +T+  C
Sbjct: 406 VNLVSLAQVTNAGVAALDALPNLKRITVSRC 436



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 93  SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQ-LSDDG 147
           S VTD  +  L  L  L  L+L GC       DS    ++A   L  L+++ C+ L DD 
Sbjct: 284 SNVTDELVGQLAPLTNLRELSLRGCTGLTGAPDSGFARIAAFARLECLDISNCKLLQDDA 343

Query: 148 CEKFSKIGSLKVLN-LGFNEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCN 204
            +   ++  L+ L  +G   +TD  L  L  L +L  L+L  C   I D G+  L  +  
Sbjct: 344 LKVVGQLPGLRQLRAVGCTALTDAALHKLAALQDLVQLDL-GCNALITDAGIAALANMQG 402

Query: 205 LKCLEL-SDTQVGSSGLRHLSGLTNLESINLS 235
           L+ + L S  QV ++G+  L  L NL+ I +S
Sbjct: 403 LEQVNLVSLAQVTNAGVAALDALPNLKRITVS 434


>gi|302802011|ref|XP_002982761.1| hypothetical protein SELMODRAFT_52320 [Selaginella moellendorffii]
 gi|300149351|gb|EFJ16006.1| hypothetical protein SELMODRAFT_52320 [Selaginella moellendorffii]
          Length = 516

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 179/432 (41%), Gaps = 77/432 (17%)

Query: 21  AITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKL--ESLNIKWCNCITDSDMK 77
           ++ A+ M    G  +L  L +E C  ++   + +L G +    E   I  C+ IT+  ++
Sbjct: 69  SVDAEWMAYIGGFRHLRVLKVESCKALNNSAIWHLSGKLHFSFERKLIDRCSKITNQGLE 128

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
            +  L  LK L +S + + + GI  L  L+ L+ L+L G PVT + + SL  L  L  L 
Sbjct: 129 HILTLGKLKHLGLSETGIGEQGIGKLAVLRNLSHLDLGGLPVTDSHVSSLLVLQLLIDLQ 188

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC---GIGDE 194
           L    ++++G         L++LNL + +++      +  +  +  LNL  C    + +E
Sbjct: 189 LWGSSITNEGANMLRGFPRLEILNLAWTKVSV-----VPSMPRVSQLNLSHCVVLSVSEE 243

Query: 195 G------------------LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS- 235
           G                  +++   L  L  LELS T + +  L  L  L  +  ++LS 
Sbjct: 244 GSALDQLRLSGATIQDPLRVLHSHSLPELSVLELSATNLAA--LTFLGSLKRVVKLDLSS 301

Query: 236 FTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAA 293
              +S  ++  LA  + +LK L+L   ++   G+A LT  +  L HL L G  ITDS   
Sbjct: 302 MPSVSSDTMNLLAKCARNLKHLDLSDTRVGSEGVAVLTGHVPALEHLSLRGTSITDSVFG 361

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIK---------DLSSLTLLNLSQNCN--------- 335
           YL     L  +++    LT   V             D S  ++L+L Q  N         
Sbjct: 362 YLGLMPLLIDIDLSNTSLTGMPVFEFTKVYYTCAPVDSSFWSVLHLQQLHNLRRLDLRRT 421

Query: 336 -------------------------LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
                                    LTD +L  +S L  L SL    + +T AGLR LKP
Sbjct: 422 RFSDKSCKRLACLVRLTHLLLCAEFLTDASLHELSALPNLRSLAFQGTVLTDAGLRSLKP 481

Query: 371 LKNLRSLTLESC 382
              L  L L  C
Sbjct: 482 PPPLEELDLTDC 493


>gi|386333501|ref|YP_006029671.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
 gi|334195950|gb|AEG69135.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
          Length = 462

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 142/339 (41%), Gaps = 36/339 (10%)

Query: 49  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 108
           GG+ +      L+ L +      TD+D++ L        L +    +T  GIA+L  L  
Sbjct: 114 GGIPSPDDYPALQKLTL--IGPFTDADLQRLPPYLRELDLSLCEGPITAVGIAHLLAL-P 170

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           L  L++ GC + A     L+   +L  LNL R  + D G   F++   L  LN+  N   
Sbjct: 171 LDRLDVSGCGLNADSARLLAGHATLTALNLRRNAIGDAGVAAFARNKKLTTLNVSGN--- 227

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
                                GIG  G+  L     +  L++SD ++G  G R L+    
Sbjct: 228 ---------------------GIGPAGVRALAANTTITTLDISDNEIGDEGARALASNAA 266

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           L  ++ S  GI     + LA  ++L SL+L   +I   G+ AL   T L  L   G  + 
Sbjct: 267 LTRLDASDCGIGPDGTQALATSTTLTSLDLSYNEIEAEGVEALGRNTTLRTLHACGNELG 326

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL- 347
              A  L     L  L +    + +AG +     ++L  LNLS N       +E +    
Sbjct: 327 HREAELLAASTTLTVLNLSSNAIGNAGARAFGANTTLAELNLSNNG------IERVPAWA 380

Query: 348 -TG-LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
            TG L +L++SN+RI  A  + L   + L +L + S ++
Sbjct: 381 DTGKLTTLDLSNNRIGDAAAQVLAASRTLTTLNVGSNRI 419



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 132/302 (43%), Gaps = 40/302 (13%)

Query: 36  LVKLDLERCTRIHGGLVNLKGL-----MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 90
           L +LDL  C     G +   G+     + L+ L++  C    DS  + L+G   L +L +
Sbjct: 146 LRELDLSLCE----GPITAVGIAHLLALPLDRLDVSGCGLNADS-ARLLAGHATLTALNL 200

Query: 91  SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-------------LG------ 131
             + + D+G+A     +KLT LN+ G  +  A + +L+A             +G      
Sbjct: 201 RRNAIGDAGVAAFARNKKLTTLNVSGNGIGPAGVRALAANTTITTLDISDNEIGDEGARA 260

Query: 132 -----SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
                +L  L+ + C +  DG +  +   +L  L+L +NEI  E +  L   T L +L+ 
Sbjct: 261 LASNAALTRLDASDCGIGPDGTQALATSTTLTSLDLSYNEIEAEGVEALGRNTTLRTLH- 319

Query: 187 DSCG--IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
            +CG  +G      L     L  L LS   +G++G R     T L  +NLS  GI    +
Sbjct: 320 -ACGNELGHREAELLAASTTLTVLNLSSNAIGNAGARAFGANTTLAELNLSNNGIE--RV 376

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
              A    L +L+L   +I D     L +   LT L++   RI D+GA  L     L +L
Sbjct: 377 PAWADTGKLTTLDLSNNRIGDAAAQVLAASRTLTTLNVGSNRIGDAGACALAGNTTLATL 436

Query: 305 EI 306
           ++
Sbjct: 437 DV 438



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 135/306 (44%), Gaps = 13/306 (4%)

Query: 7   GLSNLTSLSFRRNN----AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           G+++L +L   R +     + A   +  AG   L  L+L R      G+       KL +
Sbjct: 162 GIAHLLALPLDRLDVSGCGLNADSARLLAGHATLTALNLRRNAIGDAGVAAFARNKKLTT 221

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+   N I  + ++ L+  T + +L IS +++ D G   L     LT L+   C +   
Sbjct: 222 LNVS-GNGIGPAGVRALAANTTITTLDISDNEIGDEGARALASNAALTRLDASDCGIGPD 280

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
              +L+   +L  L+L+  ++  +G E   +  +L+ L+   NE+       L   T L 
Sbjct: 281 GTQALATSTTLTSLDLSYNEIEAEGVEALGRNTTLRTLHACGNELGHREAELLAASTTLT 340

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN---LESINLSFTGI 239
            LNL S  IG+ G         L  L LS+     +G+  +    +   L +++LS   I
Sbjct: 341 VLNLSSNAIGNAGARAFGANTTLAELNLSN-----NGIERVPAWADTGKLTTLDLSNNRI 395

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
            D + + LA   +L +LN+ + +I D G  AL   T L  LD+   RI  +G   L    
Sbjct: 396 GDAAAQVLAASRTLTTLNVGSNRIGDAGACALAGNTTLATLDVSLNRIGKAGMLALAANT 455

Query: 300 NLRSLE 305
            L+ LE
Sbjct: 456 TLKKLE 461


>gi|158429242|pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
          Length = 462

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 172/365 (47%), Gaps = 64/365 (17%)

Query: 4   NLSGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           +++ L NLT L      NN I    +   A L NL  L     T  +  + ++  L  L 
Sbjct: 77  DITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGL-----TLFNNQITDIDPLKNLT 129

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +LN    +  T SD+  LSGLT+L+ L  S ++VTD     LK L  LT   LE   +++
Sbjct: 130 NLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD-----LKPLANLT--TLERLDISS 182

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             +  +S L                   K + + SL   N   N+I+D  +  L  LTNL
Sbjct: 183 NKVSDISVLA------------------KLTNLESLIATN---NQISD--ITPLGILTNL 219

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           + L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  + L    IS+
Sbjct: 220 DELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN 275

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             +  LAGL++L +L L+  Q+ D  ++ +++L  LT+L L+   I+D   + + +   L
Sbjct: 276 --ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKL 329

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           + L      ++D  V  + +L+++  L+   N          IS LT L +L    +RIT
Sbjct: 330 QRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPLANL----TRIT 374

Query: 362 SAGLR 366
             GL 
Sbjct: 375 QLGLN 379



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 153/349 (43%), Gaps = 73/349 (20%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           ++  L NLT+L+    ++ T   + A +GL +L +L                        
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFS--------------------- 159

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
                N +T  D+KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   
Sbjct: 160 ----SNQVT--DLKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQ 206

Query: 124 LDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
           +  ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT 
Sbjct: 207 ISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 262

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
           L  L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  IS
Sbjct: 263 LTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNIS 318

Query: 241 D----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
           D     SL K                LA L+++  L+    QI+D  L  L +LT +T L
Sbjct: 319 DISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQL 376

Query: 281 DLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
            L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 377 GLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 425



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 122/253 (48%), Gaps = 43/253 (16%)

Query: 146 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 57  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+  + Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTD 165

Query: 266 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 305
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 166 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+    
Sbjct: 224 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 274

Query: 366 RHLKPLKNLRSLT 378
            ++ PL  L +LT
Sbjct: 275 -NISPLAGLTALT 286


>gi|146095030|ref|XP_001467457.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
 gi|134071822|emb|CAM70515.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
          Length = 811

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           +D+ PL   T +++L +  S V    GI  L+ L++L   ++   PV++  + SLSA  S
Sbjct: 620 TDISPLLSCTKIQALILYRSSVRSLDGIGALRQLRRL---DIAETPVSS--IRSLSACQS 674

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  LNL+   + DDG +   ++ SL+V+++ F  IT   L  L   ++LE L+  SC + 
Sbjct: 675 LEILNLSNTAVDDDGFQGIGQVQSLRVVSMSFTAITQ--LGQLGQCSHLEELHAQSCPVT 732

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
            EGLV L   C L  L LS T++  SG++ L+    L  +N+ FT + 
Sbjct: 733 SEGLVGLERACCLVKLNLSYTKL-QSGIQRLTNCRKLLKLNVKFTEVP 779



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 8/212 (3%)

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  L  L  L++ +C  GD     +   C L+ + LS   V  + + HL+ L  +E + L
Sbjct: 279 LASLQKLRRLDMTNCK-GDFDCAGIARCCFLRSVHLSGCNVKDADVPHLAQLPCVEELLL 337

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           S T I++  ++ LA    L+ + L   Q+   G+  L +L  LT LDL    ++D    +
Sbjct: 338 SRTRITN--VQALAAGKGLRIIQLSNAQVDSDGIDGLQTLPYLTRLDLSSTLVSDVN--F 393

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           L   ++L  L +    +T  G+  +  L +L  L L+ N N+ D  +  ++    L +L+
Sbjct: 394 LGQSQSLIYLNLAKTHVTSEGIAGLSRLLTLEHLMLNNN-NIRD--VSFLAESHSLKTLS 450

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
           + ++ + SAGL     L+ L+ L+L   +VT+
Sbjct: 451 LQSTLVDSAGLEGFGRLQTLQDLSLAHTRVTS 482



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 188/468 (40%), Gaps = 122/468 (26%)

Query: 30  FAGLINLVKLDLERCTRIHGGLVNLKGLMK---LESLNIKWCNCITDSDMKPLSGL---- 82
            A L  L +LD+  C     G  +  G+ +   L S+++  CN + D+D+  L+ L    
Sbjct: 279 LASLQKLRRLDMTNCK----GDFDCAGIARCCFLRSVHLSGCN-VKDADVPHLAQLPCVE 333

Query: 83  ---------TNLKSL---------QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
                    TN+++L         Q+S ++V   GI  L+ L  LT L+L    V+   +
Sbjct: 334 ELLLSRTRITNVQALAAGKGLRIIQLSNAQVDSDGIDGLQTLPYLTRLDLSSTLVSD--V 391

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           + L    SL YLNL +  ++ +G    S++ +L+ L L  N I D  +  L    +L++L
Sbjct: 392 NFLGQSQSLIYLNLAKTHVTSEGIAGLSRLLTLEHLMLNNNNIRD--VSFLAESHSLKTL 449

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDT-------------------------QVGSSG 219
           +L S  +   GL     L  L+ L L+ T                         Q G +G
Sbjct: 450 SLQSTLVDSAGLEGFGRLQTLQDLSLAHTRVTSVTELQHCHNLWRLDLQGSFVDQAGIAG 509

Query: 220 LRHLSGL-------------------TNLESINLSFTGISDGS----LRKLAGLS----- 251
           L  L  L                    +LE + + F+ +++ S    + K + L+     
Sbjct: 510 LERLPKLRILLLSKTDVASLELILKSESLEQLEVKFSHVNEKSAFFGVTKASALTDVTLT 569

Query: 252 --------------SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA----- 292
                          L+ LN+ + ++T  G+A L     L  +DL    +TD        
Sbjct: 570 HCDVSDINNLGMCKELRLLNVWSSKVTSEGIAGLCEARSLQEVDLAETAVTDISPLLSCT 629

Query: 293 ---AYLRNFKNLRSLEICGG-------GLTDAGVKHIKDLS---SLTLLNLSQNCNLTDK 339
              A +    ++RSL+  G         + +  V  I+ LS   SL +LNLS N  + D 
Sbjct: 630 KIQALILYRSSVRSLDGIGALRQLRRLDIAETPVSSIRSLSACQSLEILNLS-NTAVDDD 688

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387
             + I  +  L  +++S + IT  G   L    +L  L  +SC VT+ 
Sbjct: 689 GFQGIGQVQSLRVVSMSFTAITQLG--QLGQCSHLEELHAQSCPVTSE 734



 Score = 41.2 bits (95), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 177/424 (41%), Gaps = 71/424 (16%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           +E ++GLS L +L     N    + +   A   +L  L L+       GL     L  L+
Sbjct: 412 SEGIAGLSRLLTLEHLMLNNNNIRDVSFLAESHSLKTLSLQSTLVDSAGLEGFGRLQTLQ 471

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL--------- 112
            L++      + ++++      NL  L +  S V  +GIA L+ L KL +L         
Sbjct: 472 DLSLAHTRVTSVTELQ---HCHNLWRLDLQGSFVDQAGIAGLERLPKLRILLLSKTDVAS 528

Query: 113 --------NLEGCPVTAACLDSLSAL------GSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
                   +LE   V  + ++  SA        +L  + L  C +SD           L+
Sbjct: 529 LELILKSESLEQLEVKFSHVNEKSAFFGVTKASALTDVTLTHCDVSD--INNLGMCKELR 586

Query: 159 VLNLGFNEITDECLVHLKGLTNL-ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
           +LN+  +++T E      G+  L E+ +L    + +  + +++ L  L C ++    +  
Sbjct: 587 LLNVWSSKVTSE------GIAGLCEARSLQEVDLAETAVTDISPL--LSCTKIQALILYR 638

Query: 218 SGLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           S +R L G   L  L  ++++ T +S  S+R L+   SL+ LNL    + D G   +  +
Sbjct: 639 SSVRSLDGIGALRQLRRLDIAETPVS--SIRSLSACQSLEILNLSNTAVDDDGFQGIGQV 696

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
             L  + +    IT  G            L  C          H+++L        +Q+C
Sbjct: 697 QSLRVVSMSFTAITQLG-----------QLGQCS---------HLEELH-------AQSC 729

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
            +T + L  +     LV LN+S +++ S G++ L   + L  L ++  +V  +++  ++ 
Sbjct: 730 PVTSEGLVGLERACCLVKLNLSYTKLQS-GIQRLTNCRKLLKLNVKFTEVPYDEVAYVK- 787

Query: 395 RDLP 398
           R LP
Sbjct: 788 RHLP 791


>gi|422408524|ref|ZP_16485485.1| internalin A, partial [Listeria monocytogenes FSL F2-208]
 gi|313610685|gb|EFR85741.1| internalin A [Listeria monocytogenes FSL F2-208]
          Length = 439

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 160/346 (46%), Gaps = 51/346 (14%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   + A   L NL +L++   T     +  L GL  L+ L 
Sbjct: 13  LANLTNLTGLTLF-NNQIT--DIDALKNLTNLNRLEITGNTI--SDISVLSGLTSLQQL- 66

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAAC 123
             + N +TD  +KPL+ LT L+ L IS +KV+D S +A L  L++L   N +   +T   
Sbjct: 67  -SFGNQVTD--LKPLANLTTLERLDISSNKVSDISVLAKLTNLERLIATNNQISDITP-- 121

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
              L  L +L  L+LN  QL D G    + + +L  L++  N+I++  L  L GLT L  
Sbjct: 122 ---LGILTNLDELSLNGNQLKDIGT--LASLTNLTSLDVANNQISN--LAPLSGLTKLTE 174

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-- 241
           L L    I +  +  + GL  L  LEL + Q+    +  +S L NL  + L F  ISD  
Sbjct: 175 LELGYNQISN--ISPIEGLTALTSLELHENQL--EDISPISNLKNLTYLALYFNNISDIS 230

Query: 242 --GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
              SL K                LA L+++  L+    QI+D  L  L +LT ++ L L 
Sbjct: 231 PVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAAHNQISD--LTPLANLTRISELGLN 288

Query: 284 GARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
               T+    Y  N       KN+    I    ++D G     D++
Sbjct: 289 DQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 334



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 153/310 (49%), Gaps = 46/310 (14%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGS 132
           +D+ PL+ LTNL  L +  +++TD  I  LK L  L  L + G  ++  + L  L++L  
Sbjct: 8   TDISPLANLTNLTGLTLFNNQITD--IDALKNLTNLNRLEITGNTISDISVLSGLTSLQQ 65

Query: 133 LFYLN-------------LNRCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVHLK 176
           L + N             L R  +S +     S   K+ +L+ L    N+I+D  +  L 
Sbjct: 66  LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLERLIATNNQISD--ITPLG 123

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            LTNL+ L+L+   + D G   L  L NL  L++++ Q+  S L  LSGLT L  + L +
Sbjct: 124 ILTNLDELSLNGNQLKDIG--TLASLTNLTSLDVANNQI--SNLAPLSGLTKLTELELGY 179

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             IS+  +  + GL++L SL L   Q+ D  ++ +++L  LT+L L+   I+D   + + 
Sbjct: 180 NQISN--ISPIEGLTALTSLELHENQLED--ISPISNLKNLTYLALYFNNISD--ISPVS 233

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
           +   L+ L      ++D  V  + +L+++  L+ + N          IS LT L +L   
Sbjct: 234 SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAAHNQ---------ISDLTPLANL--- 279

Query: 357 NSRITSAGLR 366
            +RI+  GL 
Sbjct: 280 -TRISELGLN 288


>gi|398020181|ref|XP_003863254.1| hypothetical protein, unknown function [Leishmania donovani]
 gi|322501486|emb|CBZ36565.1| hypothetical protein, unknown function [Leishmania donovani]
          Length = 811

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           +D+ PL   T +++L +  S V    GI  L+ L++L   ++   PV++  + SLSA  S
Sbjct: 620 TDISPLLSCTKIQALILYRSSVRSLDGIGALRQLRRL---DIAETPVSS--IRSLSACQS 674

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L  LNL+   + DDG +   ++ SL+V+++ F  IT   L  L   ++LE L+  SC + 
Sbjct: 675 LEILNLSNTAVDDDGFQGIGQVQSLRVVSMSFTAITQ--LGQLGQCSHLEELHAQSCPVT 732

Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
            EGLV L   C L  L LS T++  SG++ L+    L  +N+ FT + 
Sbjct: 733 SEGLVGLERACCLVKLNLSYTKL-QSGIQRLTNCRKLLKLNVKFTEVP 779



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 8/212 (3%)

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L  L  L  L++ +C  GD     +   C L+ + LS   V  + + HL+ L  +E + L
Sbjct: 279 LASLQKLRRLDMTNCK-GDFDCAGIARCCFLRSVHLSGCNVKDADVPHLAQLPCVEELLL 337

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           S T I++  ++ LA    L+ + L   Q+   G+  L +L  LT LDL    ++D    +
Sbjct: 338 SRTRITN--VQALAAGKGLRIIQLSNAQVDSDGIDGLQTLPYLTRLDLSSTLVSDVN--F 393

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           L   ++L  L +    +T  G+  +  L +L  L L+ N N+ D  +  ++    L +L+
Sbjct: 394 LGQSQSLIYLNLAKTHVTSEGIAGLSRLLTLEHLMLNNN-NIRD--VSFLAESHSLKTLS 450

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
           + ++ + SAGL     L+ L+ L+L   +VT+
Sbjct: 451 LQSTLVDSAGLEGFGRLQTLQDLSLAHTRVTS 482



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 188/468 (40%), Gaps = 122/468 (26%)

Query: 30  FAGLINLVKLDLERCTRIHGGLVNLKGLMK---LESLNIKWCNCITDSDMKPLSGL---- 82
            A L  L +LD+  C     G  +  G+ +   L S+++  CN + D+D+  L+ L    
Sbjct: 279 LASLQKLRRLDMTNCK----GDFDCAGIARCCFLRSVHLSGCN-VKDADVPHLAQLPCVE 333

Query: 83  ---------TNLKSL---------QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
                    TN+++L         Q+S ++V   GI  L+ L  LT L+L    V+   +
Sbjct: 334 ELLLSRTRITNVQALAAGKGLRIIQLSNAQVDSDGIDGLQTLPYLTRLDLSSTLVSD--V 391

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           + L    SL YLNL +  ++ +G    S++ +L+ L L  N I D  +  L    +L++L
Sbjct: 392 NFLGQSQSLIYLNLAKTHVTSEGIAGLSRLLTLEHLMLNNNNIRD--VSFLAESHSLKTL 449

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDT-------------------------QVGSSG 219
           +L S  +   GL     L  L+ L L+ T                         Q G +G
Sbjct: 450 SLQSTLVDSAGLEGFGRLQTLQDLSLAHTRVTSVTELQHCHNLWRLDLQGSFVDQAGIAG 509

Query: 220 LRHLSGL-------------------TNLESINLSFTGISDGS----LRKLAGLS----- 251
           L  L  L                    +LE + + F+ +++ S    + K + L+     
Sbjct: 510 LERLPKLRILLLSKTDVASLELILKSESLEQLEVKFSHVNEKSAFFGVTKASALTDVTLT 569

Query: 252 --------------SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA----- 292
                          L+ LN+ + ++T  G+A L     L  +DL    +TD        
Sbjct: 570 HCDVSDINNLGMCKELRLLNVWSSKVTSEGIAGLCEARSLQEVDLAETAVTDISPLLSCT 629

Query: 293 ---AYLRNFKNLRSLEICGG-------GLTDAGVKHIKDLS---SLTLLNLSQNCNLTDK 339
              A +    ++RSL+  G         + +  V  I+ LS   SL +LNLS N  + D 
Sbjct: 630 KIQALILYRSSVRSLDGIGALRQLRRLDIAETPVSSIRSLSACQSLEILNLS-NTAVDDD 688

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387
             + I  +  L  +++S + IT  G   L    +L  L  +SC VT+ 
Sbjct: 689 GFQGIGQVQSLRVVSMSFTAITQLG--QLGQCSHLEELHAQSCPVTSE 734



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 177/424 (41%), Gaps = 71/424 (16%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           +E ++GLS L +L     N    + +   A   +L  L L+       GL     L  L+
Sbjct: 412 SEGIAGLSRLLTLEHLMLNNNNIRDVSFLAESHSLKTLSLQSTLVDSAGLEGFGRLQTLQ 471

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL--------- 112
            L++      + ++++      NL  L +  S V  +GIA L+ L KL +L         
Sbjct: 472 DLSLAHTRVTSVTELQ---HCHNLWRLDLQGSFVDQAGIAGLERLPKLRILLLSKTDVAS 528

Query: 113 --------NLEGCPVTAACLDSLSAL------GSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
                   +LE   V  + ++  SA        +L  + L  C +SD           L+
Sbjct: 529 LELILKSESLEQLEVKFSHVNEKSAFFGVTKASALTDVTLTHCDVSD--INNLGMCKELR 586

Query: 159 VLNLGFNEITDECLVHLKGLTNL-ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
           +LN+  +++T E      G+  L E+ +L    + +  + +++ L  L C ++    +  
Sbjct: 587 LLNVWSSKVTSE------GIAGLCEARSLQEVDLAETAVTDISPL--LSCTKIQALILYR 638

Query: 218 SGLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           S +R L G   L  L  ++++ T +S  S+R L+   SL+ LNL    + D G   +  +
Sbjct: 639 SSVRSLDGIGALRQLRRLDIAETPVS--SIRSLSACQSLEILNLSNTAVDDDGFQGIGQV 696

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
             L  + +    IT  G            L  C          H+++L        +Q+C
Sbjct: 697 QSLRVVSMSFTAITQLG-----------QLGQCS---------HLEELH-------AQSC 729

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
            +T + L  +     LV LN+S +++ S G++ L   + L  L ++  +V  +++  ++ 
Sbjct: 730 PVTSEGLVGLERACCLVKLNLSYTKLQS-GIQRLTNCRKLLKLNVKFTEVPYDEVAYVK- 787

Query: 395 RDLP 398
           R LP
Sbjct: 788 RHLP 791


>gi|405971309|gb|EKC36154.1| UBX domain-containing protein 1 [Crassostrea gigas]
          Length = 852

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 154/342 (45%), Gaps = 61/342 (17%)

Query: 39  LDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 97
           L L  C+ I   GL+ L  L KL+ LN+  C  +TD  ++ +  +  L SL +  + VT+
Sbjct: 481 LSLNSCSLITDAGLLELTSLKKLKHLNLSGCRQLTDKCLEIVKEMPGLVSLNLDGTGVTE 540

Query: 98  SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
           SG   +                       LS   SL  LNLNR  +++        + +L
Sbjct: 541 SGFIGI----------------------ILSLPASLQVLNLNRMNITEKLLTHLKDLENL 578

Query: 158 KVLNLGFNEITDECLVHLK--GLTNLESL-NLDSCGIGDEGLVNLTGLC---NLKCLELS 211
           KVL          CL H K  GL+ +E L +L++  +    +V+ + LC   NL CL ++
Sbjct: 579 KVL----------CLEHTKICGLSGVEQLKSLETLDVSQTDIVSESLLCLGDNLTCLGIA 628

Query: 212 DTQV--GSSGLRHLS------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           +T+   G   L+++       G+ N E +N       D +L+ +  LS            
Sbjct: 629 NTERVNGDLALQYIQNNLTCLGIANTERVN------GDLALQYIQRLSLRSLSLPSRLTT 682

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
           TDTGL  ++ +  LT LDL             + +  LR L +    +TDAG+  +KDL 
Sbjct: 683 TDTGLQFISHMP-LTELDLTNF------INIFKMYPRLRKLLLSNTKITDAGMNKLKDLK 735

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
            L +L L +   +TD   E+I    GLV L+++++ ITS  L
Sbjct: 736 DLQILYLDRTL-VTDACSEVIKCFQGLVELSLASTGITSQFL 776



 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 26/100 (26%)

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG------ 364
           +TDAG+  +  L  L  LNLS    LTDK LE++  + GLVSLN+  + +T +G      
Sbjct: 489 ITDAGLLELTSLKKLKHLNLSGCRQLTDKCLEIVKEMPGLVSLNLDGTGVTESGFIGIIL 548

Query: 365 --------------------LRHLKPLKNLRSLTLESCKV 384
                               L HLK L+NL+ L LE  K+
Sbjct: 549 SLPASLQVLNLNRMNITEKLLTHLKDLENLKVLCLEHTKI 588


>gi|443729605|gb|ELU15470.1| hypothetical protein CAPTEDRAFT_224593 [Capitella teleta]
          Length = 858

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 65/331 (19%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           L  L++K C+ ITD  ++ +S L  LK L ++ C+++TD+ +  ++ L  L +L LE   
Sbjct: 500 LAHLSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILESTG 559

Query: 119 VTAACLDSL--SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
           V+   +  L    L SL  L+L++ Q++            L  LNL  +E+       L 
Sbjct: 560 VSDRGMQELFHQPLTSLVNLDLSKTQVTHRIFNLAKNAPKLSHLNLEQSEVAS-----LS 614

Query: 177 GLTNL--ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-------------------- 214
           G+  L  +SLNL    I  + L+ L+G C+++ L +S+T                     
Sbjct: 615 GVKELCLQSLNLSHTKIVTDSLLCLSG-CDIRALNISNTPNIEGDLGLEYLQSLKLLQHL 673

Query: 215 -------------------------------VGSSGLRHLSGLTNLESINLSFTGISDGS 243
                                          VG  G+RH+  +T+L  + L  T I+DG 
Sbjct: 674 SLPSRLSLSDHGLQFTTAMPLVLLDLTNYLNVGDDGMRHIGKITSLRRLLLCNTKITDGG 733

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY--LRNFKNL 301
           L  L GL +L+ ++LD   ITD G   + + T L  L L    I+++   +  L     L
Sbjct: 734 LLFLRGLVNLEEISLDRTAITDEGACVVEAFTRLQQLSLTETGISNAFLEHQSLNPCYLL 793

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
             L +    ++D GV+ ++ L +LTLLNL  
Sbjct: 794 SKLNLSRTAISDKGVRCLR-LPNLTLLNLDH 823



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 131/275 (47%), Gaps = 41/275 (14%)

Query: 22  ITAQGMKAF--AGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKP 78
           ++ +GM+      L +LV LDL + T++   + NL K   KL  LN++       S++  
Sbjct: 560 VSDRGMQELFHQPLTSLVNLDLSK-TQVTHRIFNLAKNAPKLSHLNLE------QSEVAS 612

Query: 79  LSGLTNL--KSLQISCSK-VTDS---------------------GIAYLKGLQKLTLLNL 114
           LSG+  L  +SL +S +K VTDS                     G   L+ LQ L LL  
Sbjct: 613 LSGVKELCLQSLNLSHTKIVTDSLLCLSGCDIRALNISNTPNIEGDLGLEYLQSLKLLQH 672

Query: 115 EGCPVTAACLD---SLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
              P   +  D     +    L  L+L N   + DDG     KI SL+ L L   +ITD 
Sbjct: 673 LSLPSRLSLSDHGLQFTTAMPLVLLDLTNYLNVGDDGMRHIGKITSLRRLLLCNTKITDG 732

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGLTN 228
            L+ L+GL NLE ++LD   I DEG   +     L+ L L++T + ++ L H  L+    
Sbjct: 733 GLLFLRGLVNLEEISLDRTAITDEGACVVEAFTRLQQLSLTETGISNAFLEHQSLNPCYL 792

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           L  +NLS T ISD  +R L  L +L  LNLD  +I
Sbjct: 793 LSKLNLSRTAISDKGVRCLR-LPNLTLLNLDHTRI 826



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 122/260 (46%), Gaps = 36/260 (13%)

Query: 133 LFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG 190
           L +L+L  C L +D G +  S +  LKVLNL    ++TD CL  ++ L NL+ L L+S G
Sbjct: 500 LAHLSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILESTG 559

Query: 191 IGDEGLVNL--TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
           + D G+  L    L +L  L+LS TQV             L  +NL  + ++      L+
Sbjct: 560 VSDRGMQELFHQPLTSLVNLDLSKTQVTHRIFNLAKNAPKLSHLNLEQSEVA-----SLS 614

Query: 249 GLSSL--KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           G+  L  +SLNL   +I    L  L+                D  A  + N  N+     
Sbjct: 615 GVKELCLQSLNLSHTKIVTDSLLCLSG--------------CDIRALNISNTPNIEG--- 657

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGL 365
                 D G+++++ L  L  L+L    +L+D  L+  + +  LV L+++N   +   G+
Sbjct: 658 ------DLGLEYLQSLKLLQHLSLPSRLSLSDHGLQFTTAMP-LVLLDLTNYLNVGDDGM 710

Query: 366 RHLKPLKNLRSLTLESCKVT 385
           RH+  + +LR L L + K+T
Sbjct: 711 RHIGKITSLRRLLLCNTKIT 730


>gi|443729220|gb|ELU15204.1| hypothetical protein CAPTEDRAFT_93038, partial [Capitella teleta]
          Length = 382

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 129/272 (47%), Gaps = 13/272 (4%)

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
           GL  L  L+L    + +        L +L  L++N+  LS      F  + +L  L+L  
Sbjct: 94  GLHDLASLHLVDLGLRSLTPGVFRGLDNLQVLDVNKNSLSVIPNGVFEGLRALNGLSLAR 153

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS---SGLR 221
           N I D   V  K L +L SLNL S  I D    +  GL +L  L L   Q+ S      R
Sbjct: 154 NRIDDLSQVSFKELVSLASLNLYSNHITDLAADSFDGLSSLSQLNLEQNQMVSMEQDAFR 213

Query: 222 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
            LS L  L   N + TGI +G+    AGL  L++L L   ++TD  +A ++ +  L HL 
Sbjct: 214 GLSSLNKLYLENNNLTGIKNGT---FAGLHHLQTLRLSGNRLTD--VAFVSDMLALQHLH 268

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
           L    I D  A+   + + LR++ + G  L     + + D + L  L++S+N  L     
Sbjct: 269 LDDNAIEDLDASVFDHLRQLRTISLVGNQLRHFPRQLLSDKAYLQELDISKNA-LRALDS 327

Query: 342 ELISGLTGLVSLNVSNSRITS----AGLRHLK 369
           +L+ GL+ L  L +S++ +++     GL HL+
Sbjct: 328 DLLEGLSSLQYLFLSDNDLSTLPSVQGLMHLE 359



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 111/255 (43%), Gaps = 12/255 (4%)

Query: 29  AFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
            F GL NL  LD+ +   + I  G+   +GL  L  L++   N I D        L +L 
Sbjct: 115 VFRGLDNLQVLDVNKNSLSVIPNGV--FEGLRALNGLSLAR-NRIDDLSQVSFKELVSLA 171

Query: 87  SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           SL +  + +TD       GL  L+ LNLE   + +   D+   L SL  L L    L+  
Sbjct: 172 SLNLYSNHITDLAADSFDGLSSLSQLNLEQNQMVSMEQDAFRGLSSLNKLYLENNNLTGI 231

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
               F+ +  L+ L L  N +TD   V    +  L+ L+LD   I D        L  L+
Sbjct: 232 KNGTFAGLHHLQTLRLSGNRLTDVAFV--SDMLALQHLHLDDNAIEDLDASVFDHLRQLR 289

Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 266
            + L   Q+     + LS    L+ +++S   +       L GLSSL+ L L     +D 
Sbjct: 290 TISLVGNQLRHFPRQLLSDKAYLQELDISKNALRALDSDLLEGLSSLQYLFL-----SDN 344

Query: 267 GLAALTSLTGLTHLD 281
            L+ L S+ GL HL+
Sbjct: 345 DLSTLPSVQGLMHLE 359


>gi|168030611|ref|XP_001767816.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680898|gb|EDQ67330.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 628

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 165/348 (47%), Gaps = 64/348 (18%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           L+ +++ +C  + D+++  LS L +L+ L++ SC  VTDSG++ L   + L +L L+ C 
Sbjct: 111 LQDVDVTFCTQVGDAEVIALSELRHLQKLKLDSCRDVTDSGLSSLSRCKGLRILGLKYC- 169

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
                    S LG     N+        GC++      L +++L F E++D+ L  L  L
Sbjct: 170 ---------SGLGDFGIQNVA------IGCQR------LYIIDLSFTEVSDKGLASLALL 208

Query: 179 TNLESLNLDSC-GIGDEGLVNLTGLCN-------LKCLELSDTQVGSSGLRHLSGLT-NL 229
            +LE L+L SC  + D+GL  L   C         KCL +S     S G+  L+G +  L
Sbjct: 209 KHLECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLNVS-----SQGIIELTGSSVQL 263

Query: 230 ESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           + +NLS+   IS+        L +L+ + LD   I D+ L    SL G            
Sbjct: 264 QELNLSYCKLISNVLFASFQKLKTLQVVKLDGCVIGDSNL----SLIG------------ 307

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLELIS-G 346
            SG   L+      SL  C  G+TDAGV   +   + L  L+L+   ++TD  L+ ++  
Sbjct: 308 -SGCIELKEL----SLSKC-QGVTDAGVVGVVTSCTGLQKLDLTCCRDITDTALKAVATS 361

Query: 347 LTGLVSLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 392
            TGL+SL + N   +T+ GL  + K    L  L L  C +  N +K +
Sbjct: 362 CTGLLSLRMENCLLVTAEGLIMIGKSCVYLEELDLTDCNLNDNGLKSI 409



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 186/409 (45%), Gaps = 48/409 (11%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL-MKL 60
           +L+ L +L  LS      +T +G+     G  +L KL++ +C  +   G++ L G  ++L
Sbjct: 204 SLALLKHLECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLNVSSQGIIELTGSSVQL 263

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP- 118
           + LN+ +C  I++        L  L+ +++    + DS ++ +  G  +L  L+L  C  
Sbjct: 264 QELNLSYCKLISNVLFASFQKLKTLQVVKLDGCVIGDSNLSLIGSGCIELKELSLSKCQG 323

Query: 119 -VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVH 174
              A  +  +++   L  L+L  C+   D   K        +L+L       +T E L+ 
Sbjct: 324 VTDAGVVGVVTSCTGLQKLDLTCCRDITDTALKAVATSCTGLLSLRMENCLLVTAEGLIM 383

Query: 175 L-KGLTNLESLNLDSCGIGDEGLVNL---TGLCNLK---CLELSDTQVGSSGLRHLSGLT 227
           + K    LE L+L  C + D GL ++    GL  LK   C++++   + S G    +  T
Sbjct: 384 IGKSCVYLEELDLTDCNLNDNGLKSIGRCRGLRLLKVGYCMDITYAGLASIG----ATCT 439

Query: 228 NLESIN-LSFTGISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG 284
           NL  ++     GISD  +  +A G   LK +NL     ITD  L +L  L+ L  L+L  
Sbjct: 440 NLRELDCYRSVGISDEGVAAIASGCKRLKVVNLSYCSSITDASLHSLALLSDLVQLELRA 499

Query: 285 -ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
            ++IT +G +Y+  + K+LR L+          VK  K +    +L LS+ C        
Sbjct: 500 CSQITSAGISYIGASCKHLRELD----------VKRCKFVGDHGVLALSRGCR------- 542

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
                  L  +N+S + +T AG+  +  +  ++ + L    VT++   R
Sbjct: 543 ------NLRQVNLSYTAVTDAGMMAIANMSCIQDMKLVHVNVTSSCFAR 585



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 142/301 (47%), Gaps = 42/301 (13%)

Query: 22  ITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKP 78
           IT   +KA A     L+ L +E C  +   GL+ + K  + LE L++  CN + D+ +K 
Sbjct: 350 ITDTALKAVATSCTGLLSLRMENCLLVTAEGLIMIGKSCVYLEELDLTDCN-LNDNGLKS 408

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           +     L+ L++  C  +T +G+A +      T  NL         LD   ++G      
Sbjct: 409 IGRCRGLRLLKVGYCMDITYAGLASIGA----TCTNLRE-------LDCYRSVG------ 451

Query: 138 LNRCQLSDDGCEKF-SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDE 194
                +SD+G     S    LKV+NL + + ITD  L  L  L++L  L L +C  I   
Sbjct: 452 -----ISDEGVAAIASGCKRLKVVNLSYCSSITDASLHSLALLSDLVQLELRACSQITSA 506

Query: 195 GLVNLTGLC-NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLS 251
           G+  +   C +L+ L++   + VG  G+  LS G  NL  +NLS+T ++D  +  +A +S
Sbjct: 507 GISYIGASCKHLRELDVKRCKFVGDHGVLALSRGCRNLRQVNLSYTAVTDAGMMAIANMS 566

Query: 252 SLKSLNLDARQITDTGLA-ALTSLTGLTHLDLF-GARIT-DSGAAYLRNFKN----LRSL 304
            ++ + L    +T +  A AL +   L  + L  G RI   SG   +R  +N    LR +
Sbjct: 567 CIQDMKLVHVNVTSSCFARALLACGSLKKVKLLTGLRIALPSGV--IRQLENRGTRLRWM 624

Query: 305 E 305
           E
Sbjct: 625 E 625


>gi|18568225|gb|AAL75967.1|AF467463_1 PPA [Mus musculus]
          Length = 184

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 11/170 (6%)

Query: 220 LRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSL 274
           L+H+S GLT L  +NLSF G ISD  L  L+ + SL+SLNL +   I+DTG+   A+ SL
Sbjct: 14  LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSL 73

Query: 275 TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLS 331
             L+ LD+ F  ++ D   AY+ +    L+SL +C   ++D G+ + ++ +  L  LN+ 
Sbjct: 74  R-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIG 132

Query: 332 QNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 379
           Q   +TDK LELI+  L+ L  +++   +RIT  GL  +  L  L+ L L
Sbjct: 133 QCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNL 182



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 8/164 (4%)

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLL 112
           +GL  L  LN+ +C  I+D+ +  LS + +L+SL + SC  ++D+GI +L  G  +L+ L
Sbjct: 19  RGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGL 78

Query: 113 NLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEIT 168
           ++  C  V    L  ++  L  L  L+L  C +SDDG  +  + +  L+ LN+G    IT
Sbjct: 79  DVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRIT 138

Query: 169 DECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL 210
           D+ L  + + L+ L  ++L  C  I   GL  +T L  LK L L
Sbjct: 139 DKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNL 182



 Score = 45.8 bits (107), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLN 64
           GL+ L  L+      I+  G+   + + +L  L+L  C  I   G+++L  G ++L  L+
Sbjct: 20  GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 79

Query: 65  IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTA 121
           + +C+ + D  +  ++ GL  LKSL +    ++D GI   ++ +  L  LN+  C  +T 
Sbjct: 80  VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 139

Query: 122 ACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 164
             L+ ++  L  L  ++L  C +++  G E+ +++  LKVLNLG 
Sbjct: 140 KGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGL 184


>gi|407034343|gb|EKE37172.1| leucine rich repeat protein [Entamoeba nuttalli P19]
          Length = 657

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 148/339 (43%), Gaps = 32/339 (9%)

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
           ITDSD+  +  LT LK L IS  K     I  +  + +LT L +   P+      +L   
Sbjct: 175 ITDSDIPSIGKLTGLKKLSISSKKFI-GKIEDMIDVSQLTSLEISNAPLGPEFYYNLYLF 233

Query: 131 GSLFYLNLNRCQL---------------SDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
             L ++   RC L                 DG    +   SL+ L L  +E+T+  L  L
Sbjct: 234 PYLVFIGFTRCHLPISGVSAQTPLSQLSPSDGFIYLAGCNSLRYLYLNESEVTNYHLDVL 293

Query: 176 KGLTNLESLNLDSCG-IGDEGLVNL-TGLC--NLKCLELSDTQVGSSGLRHLSGLTNLES 231
             + NL  ++L  C  + D  L    TG    +L+ L +SDT V   GL+ +  L  L  
Sbjct: 294 ARMDNLLGISLKGCPTLSDYSLTPFKTGPIRKSLEELNISDTMVTHIGLQIIVRLKYLRV 353

Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNL----DARQITDTGLAALTSLTGLTHLDLFGARI 287
           +++S     DG ++ L+ L+SLK L +    +    +DT   A           L  AR 
Sbjct: 354 LDISRC---DG-IKILSPLNSLKYLEVLRLSNVHVNSDTLQDAFRIPPKYLQQLLVDARP 409

Query: 288 TDSG--AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
            D          F NL S+ +    +T  GV+ ++ +  L  ++ S+  ++ D+  E +S
Sbjct: 410 IDDPLLTVICSKFPNLVSVNLKESQITSRGVEALQMVKYLRYVDFSKT-SVDDQVFEYLS 468

Query: 346 GLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 383
            +T L +++    + I+  G+  L+PL+ LR L    CK
Sbjct: 469 KITSLETISFEECQNISGEGVHVLEPLRGLRVLNFNGCK 507



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 149/327 (45%), Gaps = 20/327 (6%)

Query: 78  PLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136
           P+SG+    S Q   S+++ S G  YL G   L  L L    VT   LD L+ + +L  +
Sbjct: 247 PISGV----SAQTPLSQLSPSDGFIYLAGCNSLRYLYLNESEVTNYHLDVLARMDNLLGI 302

Query: 137 NLNRCQ-LSDDGCEKFSKIG----SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +L  C  LSD     F K G    SL+ LN+    +T   L  +  L  L  L++  C  
Sbjct: 303 SLKGCPTLSDYSLTPF-KTGPIRKSLEELNISDTMVTHIGLQIIVRLKYLRVLDISRCD- 360

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN--LESINLSFTGISDGSLRKL-A 248
           G + L  L  L  L+ L LS+  V S  L+    +    L+ + +    I D  L  + +
Sbjct: 361 GIKILSPLNSLKYLEVLRLSNVHVNSDTLQDAFRIPPKYLQQLLVDARPIDDPLLTVICS 420

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEI 306
              +L S+NL   QIT  G+ AL  +  L ++D     + D    YL    +L   S E 
Sbjct: 421 KFPNLVSVNLKESQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYLSKITSLETISFEE 480

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGL 365
           C   ++  GV  ++ L  L +LN +   N ++ +L+ +  L+ + +L VS + +I     
Sbjct: 481 C-QNISGEGVHVLEPLRGLRVLNFNGCKNFSEYSLKEMEDLS-VETLRVSGANQIGMEAW 538

Query: 366 RHLKPLKNLRSLTLESCKVTANDIKRL 392
           +++  ++ L+ L L    V  N I+ +
Sbjct: 539 KYIAQIEQLKRLDLSFTNVEDNGIQEM 565



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 142/328 (43%), Gaps = 39/328 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAF-AGLI--NLVKLDLERCTRIHGGLVNLKGLMKLE 61
           L+ + NL  +S +    ++   +  F  G I  +L +L++      H GL  +  L  L 
Sbjct: 293 LARMDNLLGISLKGCPTLSDYSLTPFKTGPIRKSLEELNISDTMVTHIGLQIIVRLKYLR 352

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPV 119
            L+I  C+ I    + PL+ L  L+ L++S   V    +  A+    + L  L ++  P+
Sbjct: 353 VLDISRCDGI--KILSPLNSLKYLEVLRLSNVHVNSDTLQDAFRIPPKYLQQLLVDARPI 410

Query: 120 TAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
               L  + S   +L  +NL   Q++  G E    +  L+ ++     + D+   +L  +
Sbjct: 411 DDPLLTVICSKFPNLVSVNLKESQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYLSKI 470

Query: 179 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCL--------------ELSD----------- 212
           T+LE+++ + C  I  EG+  L  L  L+ L              E+ D           
Sbjct: 471 TSLETISFEECQNISGEGVHVLEPLRGLRVLNFNGCKNFSEYSLKEMEDLSVETLRVSGA 530

Query: 213 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 272
            Q+G    ++++ +  L+ ++LSFT + D  ++++     L+ + L   +ITD  +  L 
Sbjct: 531 NQIGMEAWKYIAQIEQLKRLDLSFTNVEDNGIQEMLKSKWLEVIYLRHTKITDKSIETLL 590

Query: 273 SLTGLTHLDLFGARITDSGAAYLRNFKN 300
               +  +D   AR T+    Y  NF N
Sbjct: 591 CCNLIRKID---ARETNVEKQY--NFSN 613


>gi|407859465|gb|EKG07051.1| hypothetical protein TCSYLVIO_001824 [Trypanosoma cruzi]
          Length = 929

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 112/461 (24%), Positives = 190/461 (41%), Gaps = 97/461 (21%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           M  ++S L+ L+ LS      I  + ++    L  L  L+L   +     L  L+   +L
Sbjct: 383 MYRDVSKLNKLSRLSLEGCRKI--ESLQWLRALNQLRVLNLGYSSVTDDSLTALRFCPEL 440

Query: 61  ESLNIKWCNCITDSDMKPLSGL--TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
             L+++WC  IT   +K L G    +L+ L ++ + VTD G+  LK    L L++LEGC 
Sbjct: 441 AKLDLQWCGRITS--LKYLVGALCDSLRELNLTETSVTDEGLVPLKDFAALELISLEGCG 498

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKG 177
             +  L+ L  L  L  +++ R ++++ G    S+  +L+V+ +     +TD     L  
Sbjct: 499 AVSD-LNVLCNLTRLREMDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGA 555

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           L  LE ++L  C + +EG+  L G  +L+ L L       S +  L GL +L  ++L  T
Sbjct: 556 LQQLEEVDLSDCPVTNEGIAGLFGARSLRKLRLQSCH-AVSDVNFLGGLEHLMLLDLHHT 614

Query: 238 GISD----------------------GSLRKLAG---LSSLKSLNLDARQITDTGLAALT 272
            + +                       SL++      L  LK L+L   ++T   L+ L 
Sbjct: 615 TVDEEGSVGLAQCPQLMTLIMHSVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLR 674

Query: 273 --------SLTG---LTHLDLF------GARI------------------------TDSG 291
                   SL G   +THLD        GA +                        +D G
Sbjct: 675 MCPVLETLSLRGCKNITHLDFLILQPSSGAGVCAIVPRDVEPHDTVGDIIAGKEKNSDDG 734

Query: 292 AAYLRNF------------------KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            + +                       LR L +   G+TD G++ ++    L  L L+  
Sbjct: 735 PSPIETMTINDGVIKSAAAAAVVSRHRLRELTLSDTGVTDEGLRALQYCPGLERLRLAHC 794

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
            N TD  + ++  L+ L  L++S + +T +GL  L P  NL
Sbjct: 795 KNFTD--VAVLRWLSQLKELDLSATGVTGSGLAKLSPSGNL 833



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 143/307 (46%), Gaps = 35/307 (11%)

Query: 82  LTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
           L  L+ L +S ++VT+ G+   +  L KL+ L+LEGC            + SL +L    
Sbjct: 365 LCALRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGC----------RKIESLQWLR--- 411

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
                        +  L+VLNLG++ +TD+ L  L+    L  L+L  CG        + 
Sbjct: 412 ------------ALNQLRVLNLGYSSVTDDSLTALRFCPELAKLDLQWCGRITSLKYLVG 459

Query: 201 GLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 258
            LC+ L+ L L++T V   GL  L     LE I+L   G +SD  L  L  L+ L+ +++
Sbjct: 460 ALCDSLRELNLTETSVTDEGLVPLKDFAALELISLEGCGAVSD--LNVLCNLTRLREMDV 517

Query: 259 DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
              ++T+ G+ +L+    L  + +    R+TD  A +L   + L  +++    +T+ G+ 
Sbjct: 518 GRTRVTNRGVVSLSQCQALRVMRMRQCYRLTD--ANFLGALQQLEEVDLSDCPVTNEGIA 575

Query: 318 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
            +    SL  L L Q+C+     +  + GL  L+ L++ ++ +   G   L     L +L
Sbjct: 576 GLFGARSLRKLRL-QSCHAVSD-VNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTL 633

Query: 378 TLESCKV 384
            + S  V
Sbjct: 634 IMHSVLV 640


>gi|320165719|gb|EFW42618.1| non-receptor protein kinase [Capsaspora owczarzaki ATCC 30864]
          Length = 978

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 100/234 (42%), Gaps = 24/234 (10%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
            +GLT L+ L +  ++++         L  L  L L G  +T     + S L  L  L L
Sbjct: 19  FTGLTALQILSLFNNQISSVAANAFTSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQL 78

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
           N   LS      F+ + +L  L+L  N+IT        GLT L++L L++  I       
Sbjct: 79  NNNWLSAIPTSAFTGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAANA 138

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-----------SFTG--------- 238
             GL  L  L+LSD+Q+ S      S L  L  +NL           +FTG         
Sbjct: 139 FAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTM 198

Query: 239 ----ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
               I+  S     GL++L  L L + QIT    +A T LT L  L L+G +IT
Sbjct: 199 YGNRITTISANAFTGLNALAQLFLQSNQITTISASAFTGLTALKQLYLYGNQIT 252



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 104/237 (43%), Gaps = 1/237 (0%)

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           + + L +L  L+L   Q+S      F+ + +L  L L  N+IT        GL+ L  L 
Sbjct: 18  AFTGLTALQILSLFNNQISSVAANAFTSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQ 77

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
           L++  +        TGL  L  L L   Q+ +      +GLT L+++ L+   I+  +  
Sbjct: 78  LNNNWLSAIPTSAFTGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAAN 137

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
             AGL++L  L+L   QIT       +SL  L  L+L+   ++    +       L  L 
Sbjct: 138 AFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLT 197

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           + G  +T         L++L  L L  N  +T  +    +GLT L  L +  ++IT+
Sbjct: 198 MYGNRITTISANAFTGLNALAQLFLQSN-QITTISASAFTGLTALKQLYLYGNQITT 253



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 86/221 (38%), Gaps = 26/221 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            SGLS L+ L    NN ++A    AF GL  L +L L                       
Sbjct: 67  FSGLSKLSLLQLN-NNWLSAIPTSAFTGLTALTQLSL----------------------- 102

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N IT       +GLT L++L ++ + +T        GL  L  L+L    +T+   
Sbjct: 103 --YGNQITTISASAFAGLTALQALYLNNNTITTIAANAFAGLTALNWLDLSDSQITSIPA 160

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           +  S+L +L  LNL    LS      F+ + +L  L +  N IT        GL  L  L
Sbjct: 161 NVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRITTISANAFTGLNALAQL 220

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
            L S  I        TGL  LK L L   Q+ +      +G
Sbjct: 221 FLQSNQITTISASAFTGLTALKQLYLYGNQITTISANAFAG 261


>gi|887026|gb|AAA69527.1| internalin, partial [Listeria monocytogenes]
          Length = 346

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 143/284 (50%), Gaps = 34/284 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L 
Sbjct: 66  LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL- 119

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
             + N +TD  + PL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 120 -SFGNQVTD--LXPLANLTTLERLDISXNKVSDISV-----LAKLT--NLESLIATNNQI 169

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 170 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLXGLTKL 225

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 226 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 281

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
             +  ++ L+ L+ L     +++D     ++SL  LT+++   A
Sbjct: 282 --ISPVSSLTKLQRLFFYNNKVSD-----VSSLANLTNINWLSA 318



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 174/367 (47%), Gaps = 60/367 (16%)

Query: 40  DLERCTRIHGGLVNLKGLMKLESLN----IKWCN-CITD--------------------S 74
           DL++ T +    + +K +  LE LN    I + N  +TD                    +
Sbjct: 2   DLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQIA 61

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
           D+ PL+ L+NL  L +  +++TD  I  LK L  L  L L     T + + +LS L SL 
Sbjct: 62  DITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSN--TISDISALSGLTSLQ 117

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
            L+    Q++D      + + +L+ L++  N+++D  +  L  LTNLESL   +  I D 
Sbjct: 118 QLSFGN-QVTD--LXPLANLTTLERLDISXNKVSDISV--LAKLTNLESLIATNNQISD- 171

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
            +  L  L NL  L L+  Q+   G   L+ LTNL  ++L+   IS+  L  L GL+ L 
Sbjct: 172 -ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLXGLTKLT 226

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
            L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL  L +    ++D 
Sbjct: 227 ELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD- 281

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLKPL 371
               I  +SSLT L   Q     +  +  +S L  L ++N       SAG   +  L PL
Sbjct: 282 ----ISPVSSLTKL---QRLFFYNNKVSDVSSLANLTNINW-----LSAGHNQISDLTPL 329

Query: 372 KNLRSLT 378
            NL  +T
Sbjct: 330 ANLTRIT 336


>gi|299469989|emb|CBN79166.1| Hypothetical leucine rich repeat protein [Ectocarpus siliculosus]
          Length = 894

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 124/260 (47%), Gaps = 5/260 (1%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIA-----YLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           L  L NL+ L +S +K++           L  L +L  L L    +T    + L AL +L
Sbjct: 65  LGKLGNLQQLHLSSNKLSGRWFQGHIPKELGDLSQLQALELYRNQLTGPIPEELGALSNL 124

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
            +L+L   QL+ +      ++G+L+ LNL +N+++      L   +NL  L L S  + D
Sbjct: 125 LWLSLYSNQLTGEIPATLGQLGNLEELNLSWNKLSGPIPDVLGAHSNLRELLLSSNQLTD 184

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
           E    L  L NL+ L+LS  ++     + L GL+ L+++ L F  +S      L  LS+L
Sbjct: 185 EIPATLGQLGNLQQLDLSWNKLSGYIPQELGGLSQLQTLWLYFNQLSGPIPEALGTLSNL 244

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
           + L+L + ++TD   A L  L  L  L L   +++      L +   L++L +    LT 
Sbjct: 245 RELSLYSNRLTDEIPATLGQLGNLQQLRLSWNKLSGHIPQELGSLSQLQTLGLHHNQLTG 304

Query: 314 AGVKHIKDLSSLTLLNLSQN 333
              + + DLS L  L L+ N
Sbjct: 305 PIFEALGDLSELDFLVLNDN 324



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 1/230 (0%)

Query: 53  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 112
            L  L +L++L + + N +T    + L  L+NL  L +  +++T    A L  L  L  L
Sbjct: 93  ELGDLSQLQALEL-YRNQLTGPIPEELGALSNLLWLSLYSNQLTGEIPATLGQLGNLEEL 151

Query: 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
           NL    ++    D L A  +L  L L+  QL+D+      ++G+L+ L+L +N+++    
Sbjct: 152 NLSWNKLSGPIPDVLGAHSNLRELLLSSNQLTDEIPATLGQLGNLQQLDLSWNKLSGYIP 211

Query: 173 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
             L GL+ L++L L    +       L  L NL+ L L   ++       L  L NL+ +
Sbjct: 212 QELGGLSQLQTLWLYFNQLSGPIPEALGTLSNLRELSLYSNRLTDEIPATLGQLGNLQQL 271

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
            LS+  +S    ++L  LS L++L L   Q+T     AL  L+ L  L L
Sbjct: 272 RLSWNKLSGHIPQELGSLSQLQTLGLHHNQLTGPIFEALGDLSELDFLVL 321



 Score = 44.7 bits (104), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 89/197 (45%)

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
           + N +T      L  L NL+ L +S +K++      L     L  L L    +T     +
Sbjct: 130 YSNQLTGEIPATLGQLGNLEELNLSWNKLSGPIPDVLGAHSNLRELLLSSNQLTDEIPAT 189

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           L  LG+L  L+L+  +LS    ++   +  L+ L L FN+++      L  L+NL  L+L
Sbjct: 190 LGQLGNLQQLDLSWNKLSGYIPQELGGLSQLQTLWLYFNQLSGPIPEALGTLSNLRELSL 249

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
            S  + DE    L  L NL+ L LS  ++     + L  L+ L+++ L    ++      
Sbjct: 250 YSNRLTDEIPATLGQLGNLQQLRLSWNKLSGHIPQELGSLSQLQTLGLHHNQLTGPIFEA 309

Query: 247 LAGLSSLKSLNLDARQI 263
           L  LS L  L L+  Q+
Sbjct: 310 LGDLSELDFLVLNDNQL 326



 Score = 41.6 bits (96), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 6/189 (3%)

Query: 202 LCNLKCLELSDTQVGSSGL-----RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
           L NL+ L LS  ++          + L  L+ L+++ L    ++     +L  LS+L  L
Sbjct: 68  LGNLQQLHLSSNKLSGRWFQGHIPKELGDLSQLQALELYRNQLTGPIPEELGALSNLLWL 127

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
           +L + Q+T    A L  L  L  L+L   +++      L    NLR L +    LTD   
Sbjct: 128 SLYSNQLTGEIPATLGQLGNLEELNLSWNKLSGPIPDVLGAHSNLRELLLSSNQLTDEIP 187

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
             +  L +L  L+LS N  L+    + + GL+ L +L +  ++++      L  L NLR 
Sbjct: 188 ATLGQLGNLQQLDLSWN-KLSGYIPQELGGLSQLQTLWLYFNQLSGPIPEALGTLSNLRE 246

Query: 377 LTLESCKVT 385
           L+L S ++T
Sbjct: 247 LSLYSNRLT 255



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 107/245 (43%), Gaps = 6/245 (2%)

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLV--NLTGLCNLKCLE 209
           G +  L L  N +  E    L  L NL+ L+L S    G   +G +   L  L  L+ LE
Sbjct: 45  GRVVKLKLRDNNLEGEIPATLGKLGNLQQLHLSSNKLSGRWFQGHIPKELGDLSQLQALE 104

Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 269
           L   Q+       L  L+NL  ++L    ++      L  L +L+ LNL   +++     
Sbjct: 105 LYRNQLTGPIPEELGALSNLLWLSLYSNQLTGEIPATLGQLGNLEELNLSWNKLSGPIPD 164

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
            L + + L  L L   ++TD   A L    NL+ L++    L+    + +  LS L  L 
Sbjct: 165 VLGAHSNLRELLLSSNQLTDEIPATLGQLGNLQQLDLSWNKLSGYIPQELGGLSQLQTLW 224

Query: 330 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 389
           L  N  L+    E +  L+ L  L++ ++R+T      L  L NL+ L L   K++ +  
Sbjct: 225 LYFN-QLSGPIPEALGTLSNLRELSLYSNRLTDEIPATLGQLGNLQQLRLSWNKLSGHIP 283

Query: 390 KRLQS 394
           + L S
Sbjct: 284 QELGS 288


>gi|290983094|ref|XP_002674264.1| predicted protein [Naegleria gruberi]
 gi|284087853|gb|EFC41520.1| predicted protein [Naegleria gruberi]
          Length = 328

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 5/268 (1%)

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
           C  ++   M  +     L SL  S +K+ +     L+ L  +T L ++     +   + L
Sbjct: 44  CALVSTQWMNVIRERVKLLSLTCSNAKLWNFQTRKLEFLPNITTLTVKRTVKYSFYYEPL 103

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVHLKGLTNLES 183
             +  L  LN+N       G  +  +I      L  LN+G N I D  +  +  +  L S
Sbjct: 104 KTMNQLTSLNINGHFFCKHGIPQLWRIIDEFKQLTNLNIGNNIIGDIGVARISEMKQLTS 163

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-DG 242
           LN+ +     EG+ +++GL  L  L + + ++GS G+  + G+  L S+N++   I  +G
Sbjct: 164 LNVCNNDFSQEGVKSISGLNQLTQLNIVNNRIGSEGVNLICGMVQLTSLNIATNYIGFEG 223

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           +      +  L  L++    I   G   ++ +  LT L++    I   GA Y+   K L 
Sbjct: 224 AKLISTRMKQLTILDIYNNNIGQEGAEFISKMNQLTKLNIGKNNIGQQGAKYISEMKQLT 283

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNL 330
           +L I    +   G K+I+++  LT L+L
Sbjct: 284 TLNISRSHIGRKGEKYIREMRHLTFLDL 311



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR----NFKN 300
           RKL  L ++ +L +            L ++  LT L++ G      G   L      FK 
Sbjct: 77  RKLEFLPNITTLTVKRTVKYSFYYEPLKTMNQLTSLNINGHFFCKHGIPQLWRIIDEFKQ 136

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360
           L +L I    + D GV  I ++  LT LN+  N + + + ++ ISGL  L  LN+ N+RI
Sbjct: 137 LTNLNIGNNIIGDIGVARISEMKQLTSLNVCNN-DFSQEGVKSISGLNQLTQLNIVNNRI 195

Query: 361 TSAGLRHLKPLKNLRSLTL-------ESCKVTANDIKRLQSRDLPN 399
            S G+  +  +  L SL +       E  K+ +  +K+L   D+ N
Sbjct: 196 GSEGVNLICGMVQLTSLNIATNYIGFEGAKLISTRMKQLTILDIYN 241



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 5/161 (3%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK-GLMKLESL 63
           +S +  LTSL+   NN  + +G+K+ +GL  L +L++    RI    VNL  G+++L SL
Sbjct: 155 ISEMKQLTSLNVC-NNDFSQEGVKSISGLNQLTQLNIVN-NRIGSEGVNLICGMVQLTSL 212

Query: 64  NIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           NI   N I     K +S  +  L  L I  + +   G  ++  + +LT LN+    +   
Sbjct: 213 NIA-TNYIGFEGAKLISTRMKQLTILDIYNNNIGQEGAEFISKMNQLTKLNIGKNNIGQQ 271

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163
               +S +  L  LN++R  +   G +   ++  L  L+LG
Sbjct: 272 GAKYISEMKQLTTLNISRSHIGRKGEKYIREMRHLTFLDLG 312


>gi|290979531|ref|XP_002672487.1| leucine-rich repeat domain protein [Naegleria gruberi]
 gi|284086064|gb|EFC39743.1| leucine-rich repeat domain protein [Naegleria gruberi]
          Length = 612

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 124/251 (49%), Gaps = 24/251 (9%)

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           +  S   +L  LN+N  ++ +      SK+  L  LN+G N+IT     HLK L NL +L
Sbjct: 349 NDFSMFKNLTELNVNETKIGNKVLLAISKMTQLTSLNIGKNDITKNVFKHLKKLDNLTAL 408

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDG- 242
           +L+ CG+ D  +  L  L  +  L L +  +    L+ L S L NL  +N      S+G 
Sbjct: 409 DLEDCGVKD--ITPLAKLTKITKLNLKNNYLKGEWLQKLVSYLPNLRKLN------SEGN 460

Query: 243 ---SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD---LFGARITDSGAAYL- 295
              SL  L+ L++++ L L + + +D     L  L  L +LD   +    I + GA  L 
Sbjct: 461 ELTSLAPLSLLTNIQKLKLKSLKFSDIKEMQLQHLLKLEYLDKLSITSMDIGEEGAKILG 520

Query: 296 -RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG--LTGLVS 352
              FK+L+ L IC   L D  +  I   +SL  L+L +N NLT+K + +IS   L  +  
Sbjct: 521 RGRFKHLK-LNIC--ELHDRALPFILTNTSLRTLDLQKN-NLTEKGVNIISKSYLPFMQK 576

Query: 353 LNVSNSRITSA 363
           +NVS ++  ++
Sbjct: 577 VNVSENKYYAS 587



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 9/194 (4%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +S +T L SL I  + +T +   +LK L  LT L+LE C V    +  L+ L  +  LNL
Sbjct: 375 ISKMTQLTSLNIGKNDITKNVFKHLKKLDNLTALDLEDCGVKD--ITPLAKLTKITKLNL 432

Query: 139 NRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
               L  +  +K  S + +L+ LN   NE+T   L  L  LTN++ L L S    D   +
Sbjct: 433 KNNYLKGEWLQKLVSYLPNLRKLNSEGNELT--SLAPLSLLTNIQKLKLKSLKFSDIKEM 490

Query: 198 NLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
            L  L  L+ L+   ++   +G  G + L G    + + L+   + D +L  +   +SL+
Sbjct: 491 QLQHLLKLEYLDKLSITSMDIGEEGAKIL-GRGRFKHLKLNICELHDRALPFILTNTSLR 549

Query: 255 SLNLDARQITDTGL 268
           +L+L    +T+ G+
Sbjct: 550 TLDLQKNNLTEKGV 563



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 12/159 (7%)

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
           G+    +   +L  LN++  +I +  L A++ +T LT L++    IT +   +L+   NL
Sbjct: 346 GNRNDFSMFKNLTELNVNETKIGNKVLLAISKMTQLTSLNIGKNDITKNVFKHLKKLDNL 405

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTL---LNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
            +L+     L D GVK I  L+ LT    LNL  N    +   +L+S L  L  LN   +
Sbjct: 406 TALD-----LEDCGVKDITPLAKLTKITKLNLKNNYLKGEWLQKLVSYLPNLRKLNSEGN 460

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 397
            +TS  L  L  L N++ L L+S K +  DIK +Q + L
Sbjct: 461 ELTS--LAPLSLLTNIQKLKLKSLKFS--DIKEMQLQHL 495



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 17/237 (7%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL--- 162
            + LT LN+    +    L ++S +  L  LN+ +  ++ +  +   K+ +L  L+L   
Sbjct: 354 FKNLTELNVNETKIGNKVLLAISKMTQLTSLNIGKNDITKNVFKHLKKLDNLTALDLEDC 413

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLR 221
           G  +IT      L  LT +  LNL +  +  E L  L   L NL+ L     ++ S  L 
Sbjct: 414 GVKDITP-----LAKLTKITKLNLKNNYLKGEWLQKLVSYLPNLRKLNSEGNELTS--LA 466

Query: 222 HLSGLTNLESI---NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
            LS LTN++ +   +L F+ I +  L+ L  L  L  L++ +  I + G A +       
Sbjct: 467 PLSLLTNIQKLKLKSLKFSDIKEMQLQHLLKLEYLDKLSITSMDIGEEG-AKILGRGRFK 525

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD--LSSLTLLNLSQN 333
           HL L    + D    ++    +LR+L++    LT+ GV  I    L  +  +N+S+N
Sbjct: 526 HLKLNICELHDRALPFILTNTSLRTLDLQKNNLTEKGVNIISKSYLPFMQKVNVSEN 582



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 31/192 (16%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S ++ LTSL+  +N+ IT    K    L NL  LDLE C      +  L  L K+  LN
Sbjct: 375 ISKMTQLTSLNIGKND-ITKNVFKHLKKLDNLTALDLEDCGV--KDITPLAKLTKITKLN 431

Query: 65  IK-------WCNCITD---------------SDMKPLSGLTNLKSLQISCSKVTDSGIAY 102
           +K       W   +                 + + PLS LTN++ L++   K +D     
Sbjct: 432 LKNNYLKGEWLQKLVSYLPNLRKLNSEGNELTSLAPLSLLTNIQKLKLKSLKFSDIKEMQ 491

Query: 103 LKGLQKLTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
           L+ L KL    L+   +T+  +    A     G   +L LN C+L D          SL+
Sbjct: 492 LQHLLKLEY--LDKLSITSMDIGEEGAKILGRGRFKHLKLNICELHDRALPFILTNTSLR 549

Query: 159 VLNLGFNEITDE 170
            L+L  N +T++
Sbjct: 550 TLDLQKNNLTEK 561


>gi|343421641|emb|CCD18751.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
          Length = 518

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 187/415 (45%), Gaps = 37/415 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L  +S+L  ++    +AI   G   F  +  L  L L R       L +L     L  LN
Sbjct: 105 LCDMSSLEEVALHNASAIVHIG--KFGRMPCLRVLTLHRVGVTDDFLCSLTTSGSLTHLN 162

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +  C+ +TD  ++PL+ +  L+ + +S S     G+A L  L +L  LNL+   VT  CL
Sbjct: 163 LTECSRLTD--VEPLASIKTLEQVNLSGSFPGVRGLAALGSLPRLRELNLKHTAVTDDCL 220

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-----------GF--------- 164
            +LSA  +L  L L  C+   D      KI SL+V++L           GF         
Sbjct: 221 KTLSASKTLVRLFLVDCRRLTD-VTPLVKISSLQVVDLSDCSGITKGMGGFGTLSGLYAL 279

Query: 165 ----NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
                 +TDE L  L    +LESL++  C  + D G++       L+ L++S+    + G
Sbjct: 280 SLTGTALTDEQLQELCASQSLESLSIKRCKLLTDVGVLGFVT--TLRELDMSECDGVARG 337

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT 278
               S L  L S+ ++FT +++  L +++    L  L++   +++TD  ++ L+ +  L 
Sbjct: 338 FCSFSALRELRSLYMTFTCVTNECLCEISKCPQLVKLSVAGCKKLTD--ISCLSQVHTLE 395

Query: 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338
            L++      + G   L   + LR+L +    + +  ++ +    +L    L     +TD
Sbjct: 396 DLNVNMCEHIEDGLGVLGGLEELRTLRMSFTAVGNDELRLVCKSKTLERSELEGCERITD 455

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
             +  ++    L+ LN+   +    G+  L  L  LR ++L+   VT +D+K L+
Sbjct: 456 --VSALAVAQSLMFLNLDRCQKVVTGVGELGKLPALRVVSLQGVSVTEDDMKSLK 508



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 139/311 (44%), Gaps = 41/311 (13%)

Query: 18  RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI---KWCNCITDS 74
           ++ A+T   +K  +    LV+L L  C R    L ++  L+K+ SL +     C+ IT  
Sbjct: 211 KHTAVTDDCLKTLSASKTLVRLFLVDCRR----LTDVTPLVKISSLQVVDLSDCSGITKG 266

Query: 75  DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG--- 131
            M     L+ L +L ++ + +TD  +  L   Q L  L+++ C +    L  +  LG   
Sbjct: 267 -MGGFGTLSGLYALSLTGTALTDEQLQELCASQSLESLSIKRCKL----LTDVGVLGFVT 321

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL--------------KG 177
           +L  L+++ C     G   FS +  L+ L + F  +T+ECL  +              K 
Sbjct: 322 TLRELDMSECDGVARGFCSFSALRELRSLYMTFTCVTNECLCEISKCPQLVKLSVAGCKK 381

Query: 178 LTN---------LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           LT+         LE LN++ C   ++GL  L GL  L+ L +S T VG+  LR +     
Sbjct: 382 LTDISCLSQVHTLEDLNVNMCEHIEDGLGVLGGLEELRTLRMSFTAVGNDELRLVCKSKT 441

Query: 229 LESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           LE   L     I+D S   LA   SL  LNLD  Q   TG+  L  L  L  + L G  +
Sbjct: 442 LERSELEGCERITDVS--ALAVAQSLMFLNLDRCQKVVTGVGELGKLPALRVVSLQGVSV 499

Query: 288 TDSGAAYLRNF 298
           T+     L+ +
Sbjct: 500 TEDDMKSLKMY 510


>gi|87308227|ref|ZP_01090369.1| hypothetical protein DSM3645_21557 [Blastopirellula marina DSM
           3645]
 gi|87289309|gb|EAQ81201.1| hypothetical protein DSM3645_21557 [Blastopirellula marina DSM
           3645]
          Length = 376

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 4/277 (1%)

Query: 21  AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPL 79
           A T + ++    L ++ +L L R  +++    + + +M+L  L   + +   TD DM+ +
Sbjct: 71  AATEENLRHLVKLPHVERLWLGRSFKLNER--SWEAIMQLRELEYLYLHSQPTDDDMRQI 128

Query: 80  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
           + LTNL++L I    +++ G+ YL+ L+ L  L ++       C   L+ + SL  L L 
Sbjct: 129 AQLTNLRTLLIDGRNLSNIGLWYLEELRFLENLTIQSASFDGDCFHYLANVRSLTNLTLQ 188

Query: 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 199
             +L         ++  L++L L    +       +  LT+L SLNL +     E +  L
Sbjct: 189 SDKLKSSDLAGLGELPQLELLFLSVQSVDGAGFAEIGKLTHLRSLNLRNVRTTAEQMKPL 248

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
             L  L+ L ++D+ +   GL  +  L +L  + L+ + I D  L  L  L  L +LNL 
Sbjct: 249 AQLQELQFLTMNDSSI-KGGLGPIGDLRDLHRLELANSTIRDEDLDSLQQLPLLANLNLA 307

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             +ITD GL  L  +  L  L++    +T  G   L+
Sbjct: 308 HTKITDAGLVKLGQMKRLNTLNVRNTTVTKEGLQALQ 344



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 134/296 (45%), Gaps = 5/296 (1%)

Query: 107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFN 165
           Q L  +N      T   L  L  L  +  L L R  +L++   E   ++  L+ L L  +
Sbjct: 60  QMLFNVNFVDAAATEENLRHLVKLPHVERLWLGRSFKLNERSWEAIMQLRELEYLYL-HS 118

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           + TD+ +  +  LTNL +L +D   + + GL  L  L  L+ L +           +L+ 
Sbjct: 119 QPTDDDMRQIAQLTNLRTLLIDGRNLSNIGLWYLEELRFLENLTIQSASFDGDCFHYLAN 178

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           + +L ++ L    +    L  L  L  L+ L L  + +   G A +  LT L  L+L   
Sbjct: 179 VRSLTNLTLQSDKLKSSDLAGLGELPQLELLFLSVQSVDGAGFAEIGKLTHLRSLNLRNV 238

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           R T      L   + L+ L +    +   G+  I DL  L  L L+ N  + D+ L+ + 
Sbjct: 239 RTTAEQMKPLAQLQELQFLTMNDSSIK-GGLGPIGDLRDLHRLELA-NSTIRDEDLDSLQ 296

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 401
            L  L +LN+++++IT AGL  L  +K L +L + +  VT   ++ LQ +  P L+
Sbjct: 297 QLPLLANLNLAHTKITDAGLVKLGQMKRLNTLNVRNTTVTKEGLQALQGK-WPQLI 351


>gi|89111184|dbj|BAE80273.1| leucine-rich repeat protein [Acidovorax avenae subsp. avenae]
          Length = 547

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 150/349 (42%), Gaps = 31/349 (8%)

Query: 22  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81
           + A+G +A AG  +L  L L+ C                          +T   +  +S 
Sbjct: 202 LDAEGARALAGAGSLATLRLDHCG-------------------------LTPEGLAAVSS 236

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
           L  L  LQ   + +       L GL+ L  L+L+G  + A     ++ +  L  L+LN  
Sbjct: 237 LPRLSRLQARGNGLGPEAAPALPGLRSLVELDLDGNRLGAEGAAVIARMQGLRTLSLNHN 296

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            L DDG    + +  L+ L++  N+I       L     L +L+L    +GD G+  L G
Sbjct: 297 ALGDDGARALAALPGLQTLSVQANQIGAAGAAALARGPALRALDLHRNRLGDAGVRALAG 356

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
               + L+L+   +G+ G   L+ L  L+++ ++   + D     LA   SL+ L+    
Sbjct: 357 GTRWQQLDLARNGIGAEGAAALAHLPALDTLVIAHNPLGDAGAGALAASDSLRFLDAGDC 416

Query: 262 QITDTGLAALTSLTGLTHLDL-----FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
           +I DTG +AL+    L  L L      G RI + GA  L    +L  +++ G  +  AG 
Sbjct: 417 RIGDTGASALSRCPQLASLVLNNSSAEGVRIGERGALALAASPSLEEIDLEGHAVGSAGA 476

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
           +       L  L L++N  + +     ++G   L SL++ ++R+T   L
Sbjct: 477 RAFAANPRLRRLGLARN-QVGNAGAHALAGSASLASLDLWDNRVTDKAL 524



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%)

Query: 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
           +L  L L   P+ A    +L+  GSL  L L+ C L+ +G    S +  L  L    N +
Sbjct: 191 RLATLELAHVPLDAEGARALAGAGSLATLRLDHCGLTPEGLAAVSSLPRLSRLQARGNGL 250

Query: 168 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 227
             E    L GL +L  L+LD   +G EG   +  +  L+ L L+   +G  G R L+ L 
Sbjct: 251 GPEAAPALPGLRSLVELDLDGNRLGAEGAAVIARMQGLRTLSLNHNALGDDGARALAALP 310

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
            L+++++    I       LA   +L++L+L   ++ D G+ AL   T    LDL
Sbjct: 311 GLQTLSVQANQIGAAGAAALARGPALRALDLHRNRLGDAGVRALAGGTRWQQLDL 365



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 134/308 (43%), Gaps = 13/308 (4%)

Query: 2   TENLSGLSNLTSLSF--RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 59
            E L+ +S+L  LS    R N +  +   A  GL +LV+LDL+       G   +  +  
Sbjct: 228 PEGLAAVSSLPRLSRLQARGNGLGPEAAPALPGLRSLVELDLDGNRLGAEGAAVIARMQG 287

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L +L++   N + D   + L+ L  L++L +  +++  +G A L     L  L+L    +
Sbjct: 288 LRTLSLN-HNALGDDGARALAALPGLQTLSVQANQIGAAGAAALARGPALRALDLHRNRL 346

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
             A + +L+       L+L R  +  +G    + + +L  L +  N + D     L    
Sbjct: 347 GDAGVRALAGGTRWQQLDLARNGIGAEGAAALAHLPALDTLVIAHNPLGDAGAGALAASD 406

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-----QVGSSGLRHLSGLTNLESINL 234
           +L  L+   C IGD G   L+    L  L L+++     ++G  G   L+   +LE I+L
Sbjct: 407 SLRFLDAGDCRIGDTGASALSRCPQLASLVLNNSSAEGVRIGERGALALAASPSLEEIDL 466

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS---- 290
               +     R  A    L+ L L   Q+ + G  AL     L  LDL+  R+TD     
Sbjct: 467 EGHAVGSAGARAFAANPRLRRLGLARNQVGNAGAHALAGSASLASLDLWDNRVTDKALHS 526

Query: 291 -GAAYLRN 297
            GA +LR 
Sbjct: 527 RGAPWLRR 534


>gi|290972876|ref|XP_002669176.1| predicted protein [Naegleria gruberi]
 gi|284082720|gb|EFC36432.1| predicted protein [Naegleria gruberi]
          Length = 390

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 36/289 (12%)

Query: 130 LGSLFYL---NLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLN 185
            G L YL   +++   LSD+         +LK L++  N +IT+  +  +   + L  L+
Sbjct: 23  FGELKYLTSLDISNKHLSDEYIATIGNWDTLKELDVSLNSDITERGIGIISEKSLLNKLS 82

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI------ 239
           + S  I  +G   ++ + NL  L +  T +    ++ +S +  L +I++SF  I      
Sbjct: 83  VHSMTISTKGFELISRMKNLTDLNIMQTVLDIEKIKFISEMEQLTAIDISFNNIGTDELG 142

Query: 240 -------------------SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
                              SDG+ + +  L  L  L+++  QI   G+  +  L  LTHL
Sbjct: 143 LICKLEKLRILKANGNQINSDGA-KLIKDLKHLTHLSINNNQIGKEGVKCIGELEHLTHL 201

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 340
            +   RI D G  Y+   + L  L I   G+   GVK++  LS L  L++  N   + KT
Sbjct: 202 AVGSNRIKDKGLKYIGRLQRLNFLSIYDNGIKGKGVKYLSSLSRLVTLDIHSNGIDSSKT 261

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 389
            +LIS +T L SL++S++   ++     K + NL+ LT     ++ ND+
Sbjct: 262 TKLISEMTQLRSLDISDNYFGNS----FKCITNLKQLT--KLNISENDL 304



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 142/314 (45%), Gaps = 2/314 (0%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L+ L++   + IT+  +  +S  + L  L +    ++  G   +  ++ LT LN+    +
Sbjct: 53  LKELDVSLNSDITERGIGIISEKSLLNKLSVHSMTISTKGFELISRMKNLTDLNIMQTVL 112

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
               +  +S +  L  ++++   +  D      K+  L++L    N+I  +    +K L 
Sbjct: 113 DIEKIKFISEMEQLTAIDISFNNIGTDELGLICKLEKLRILKANGNQINSDGAKLIKDLK 172

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           +L  L++++  IG EG+  +  L +L  L +   ++   GL+++  L  L  +++   GI
Sbjct: 173 HLTHLSINNNQIGKEGVKCIGELEHLTHLAVGSNRIKDKGLKYIGRLQRLNFLSIYDNGI 232

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNF 298
               ++ L+ LS L +L++ +  I  +    L S +T L  LD+      +S    + N 
Sbjct: 233 KGKGVKYLSSLSRLVTLDIHSNGIDSSKTTKLISEMTQLRSLDISDNYFGNSFKC-ITNL 291

Query: 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358
           K L  L I    LTD     I  LS LT L++  N  + +   E+   L  L  L++S++
Sbjct: 292 KQLTKLNISENDLTDKFASSISQLSQLTYLDIRGNEIIYEGFKEICEKLEYLTYLDLSDN 351

Query: 359 RITSAGLRHLKPLK 372
           +     +  L   K
Sbjct: 352 QTNEKAISFLASFK 365



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 135/281 (48%), Gaps = 4/281 (1%)

Query: 21  AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 80
            I+ +G +  + + NL  L++ +       +  +  + +L +++I + N  TD ++  + 
Sbjct: 87  TISTKGFELISRMKNLTDLNIMQTVLDIEKIKFISEMEQLTAIDISFNNIGTD-ELGLIC 145

Query: 81  GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
            L  L+ L+ + +++   G   +K L+ LT L++    +    +  +  L  L +L +  
Sbjct: 146 KLEKLRILKANGNQINSDGAKLIKDLKHLTHLSINNNQIGKEGVKCIGELEHLTHLAVGS 205

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL- 199
            ++ D G +   ++  L  L++  N I  + + +L  L+ L +L++ S GI       L 
Sbjct: 206 NRIKDKGLKYIGRLQRLNFLSIYDNGIKGKGVKYLSSLSRLVTLDIHSNGIDSSKTTKLI 265

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
           + +  L+ L++SD   G+S  + ++ L  L  +N+S   ++D     ++ LS L  L++ 
Sbjct: 266 SEMTQLRSLDISDNYFGNS-FKCITNLKQLTKLNISENDLTDKFASSISQLSQLTYLDIR 324

Query: 260 ARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFK 299
             +I   G   +   L  LT+LDL   +  +   ++L +FK
Sbjct: 325 GNEIIYEGFKEICEKLEYLTYLDLSDNQTNEKAISFLASFK 365


>gi|261331843|emb|CBH14837.1| leucine-rich repeat protein (LRRP, pseudogene),putative [Trypanosoma
            brucei gambiense DAL972]
          Length = 1517

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 179/427 (41%), Gaps = 70/427 (16%)

Query: 28   KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 87
            K+FA      KL LE C +  G +  L  L+ LE LN+ +C+ +T S M  L  L  L+ 
Sbjct: 742  KSFA------KLSLENC-KGFGDVKPLSNLVTLEELNLHYCDKVT-SGMGTLGSLPQLRV 793

Query: 88   LQI--------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 120
            L +                           C K+T  S IA L  L++L   N++ C   
Sbjct: 794  LDLGRTQADNNSLENICTSSIPLVLLNLSHCKKITSISTIASLTALEEL---NIDNCCNV 850

Query: 121  AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 179
             +  +    L  L    L+  +++D+     S+  SL  LNL F  +ITD  +  L  +T
Sbjct: 851  TSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNLAFCKDITD--VTALSKIT 908

Query: 180  NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
             LE LNLD C    +G+  L  L   + L + +  + +    ++  L  +  +N S+   
Sbjct: 909  MLEELNLDCCHNIRKGIETLGKLPKARILSMKECYMETDMRNNVPSLGIVSHLN-SWKA- 966

Query: 240  SDGSLRKLAGL----------------SSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
            S G+  K  G+                 SL  LNL+ R +    + AL+++  L  L L 
Sbjct: 967  SQGTYPKHEGMLHGDGYAQQCSILGNSKSLVKLNLE-RSMGFISVKALSNIATLEELVLD 1025

Query: 284  GARITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNLSQNCNLTDKT 340
             A+        + +F  L  L +     TD      K+I +  SL  LNLS    +TD  
Sbjct: 1026 HAQ----EVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTD-- 1079

Query: 341  LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPN 399
            + ++S L+ L  LN+S       G   L  L  LR   L   K+TA DI  L S + L  
Sbjct: 1080 ISVLSSLSTLEELNISECEQIRKGWESLGKLPLLRVAILSDTKITAKDIVCLSSCKTLVK 1139

Query: 400  LVSFRPE 406
            L  FR E
Sbjct: 1140 LKFFRCE 1146



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 172/410 (41%), Gaps = 56/410 (13%)

Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           ++A A ++ L KL L  C  I   +  L    +L+ L++   N   +S ++ L     + 
Sbjct: 545 VEALANILTLEKLSLLGCNGIDAVIGCLGNPPQLKMLDLSGTNTDNES-LRSLCLSQTMV 603

Query: 87  SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 145
           SL +S C K+T+  ++++  L+ L  LNL  C    A  ++L  L  L    L+   ++D
Sbjct: 604 SLNLSHCWKMTN--MSHISSLEALNELNLSDCFEINAGWEALEKLQQLHVAILSNTHITD 661

Query: 146 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204
                FSK  +L  L+L F +++ D  +  L  +T LE LNL +C    +GL  L  L  
Sbjct: 662 GDISHFSKCKNLVTLDLSFCDKLLD--VTALSNITTLEDLNLSNCSKIRKGLSVLGELPR 719

Query: 205 LKCLE-----LSDTQVGSSG------------------LRHLSGLTNLESINLSFTGISD 241
           L+ L      L D+ +GS G                  ++ LS L  LE +NL +     
Sbjct: 720 LRVLNVKGVLLEDSVIGSLGNGKSFAKLSLENCKGFGDVKPLSNLVTLEELNLHYCDKVT 779

Query: 242 GSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTGL 277
             +  L  L  L+ L+L   Q  +                        T ++ + SLT L
Sbjct: 780 SGMGTLGSLPQLRVLDLGRTQADNNSLENICTSSIPLVLLNLSHCKKITSISTIASLTAL 839

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337
             L++       SG         LR   +    + D  ++++ +  SL  LNL+   ++T
Sbjct: 840 EELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNLAFCKDIT 899

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387
           D T   +S +T L  LN+        G+  L  L   R L+++ C +  +
Sbjct: 900 DVT--ALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECYMETD 947



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 167/368 (45%), Gaps = 28/368 (7%)

Query: 36  LVKLDLERCTRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 92
           L++L++E  T    GL N++ L   + LE L++  CN I D+ +  L     LK L +S 
Sbjct: 531 LLQLNMESIT----GLSNVEALANILTLEKLSLLGCNGI-DAVIGCLGNPPQLKMLDLSG 585

Query: 93  SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 152
           +   +  +  L   Q +  LNL  C      +  +S+L +L  LNL+ C   + G E   
Sbjct: 586 TNTDNESLRSLCLSQTMVSLNLSHC-WKMTNMSHISSLEALNELNLSDCFEINAGWEALE 644

Query: 153 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE--- 209
           K+  L V  L    ITD  + H     NL +L+L  C    + L+++T L N+  LE   
Sbjct: 645 KLQQLHVAILSNTHITDGDISHFSKCKNLVTLDLSFC----DKLLDVTALSNITTLEDLN 700

Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGL 268
           LS+      GL  L  L  L  +N+    + D  +  L    S   L+L+  +   D  +
Sbjct: 701 LSNCSKIRKGLSVLGELPRLRVLNVKGVLLEDSVIGSLGNGKSFAKLSLENCKGFGD--V 758

Query: 269 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS---- 324
             L++L  L  L+L       SG   L +   LR L++   G T A    ++++ +    
Sbjct: 759 KPLSNLVTLEELNLHYCDKVTSGMGTLGSLPQLRVLDL---GRTQADNNSLENICTSSIP 815

Query: 325 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           L LLNLS    +T  ++  I+ LT L  LN+ N    ++G      L  LR  TL + ++
Sbjct: 816 LVLLNLSHCKKIT--SISTIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRI 873

Query: 385 TANDIKRL 392
              +I+ +
Sbjct: 874 NDENIRYV 881



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 168/375 (44%), Gaps = 48/375 (12%)

Query: 58  MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEG 116
           +KL  L++  CN I D+   P+S L  L+ L + SC  +T  GI  L  L +L +L+L G
Sbjct: 301 VKLFKLSVSECNNIMDA--TPISQLAALEELNLNSCYHIT-KGIGTLGMLLRLRVLDLSG 357

Query: 117 CPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------- 153
            PV    L  L   GSL  LNL+ C QL+D               +GC + ++       
Sbjct: 358 APVEDNFLKDLCDCGSLERLNLSYCIQLTDINPLSNAAATEELNLNGCRRITRGMGVVWV 417

Query: 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD----EGLVNLTGLCNLKCL 208
           +  L+VL++    +++  L  +     L  ++LD+C G GD      +V L  L   KC+
Sbjct: 418 LPKLRVLHMKDMHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKCV 477

Query: 209 ELSDTQVGSSG-LRHLSGLTNL---------ESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           ++  + VG  G L +L  LT             +N+    IS      +    SL  LN+
Sbjct: 478 DII-SGVGCLGTLPYLVYLTWCGLPWYTTVPRVLNIKEAHISSLDFTGICASKSLLQLNM 536

Query: 259 DARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
           ++  IT  + + AL ++  L  L L G    D+    L N   L+ L++ G    +  ++
Sbjct: 537 ES--ITGLSNVEALANILTLEKLSLLGCNGIDAVIGCLGNPPQLKMLDLSGTNTDNESLR 594

Query: 318 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
            +    ++  LNLS    +T+  +  IS L  L  LN+S+    +AG   L+ L+ L   
Sbjct: 595 SLCLSQTMVSLNLSHCWKMTN--MSHISSLEALNELNLSDCFEINAGWEALEKLQQLHVA 652

Query: 378 TLESCKVTANDIKRL 392
            L +  +T  DI   
Sbjct: 653 ILSNTHITDGDISHF 667



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 163/394 (41%), Gaps = 53/394 (13%)

Query: 24   AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL------NIKWCNCITDSDMK 77
            AQ         +LVKL+LER      G +++K L  + +L      + +   CI      
Sbjct: 984  AQQCSILGNSKSLVKLNLERSM----GFISVKALSNIATLEELVLDHAQEVCCIPSFSCL 1039

Query: 78   PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
            P   + NLK   I+   VT   I+  K L+ L   NL  C      +  LS+L +L  LN
Sbjct: 1040 PRLRVLNLKYTDIN-GDVT-KNISESKSLRSL---NLSHCKWVTD-ISVLSSLSTLEELN 1093

Query: 138  LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
            ++ C+    G E   K+  L+V  L   +IT + +V L     L  L    C    E L 
Sbjct: 1094 ISECEQIRKGWESLGKLPLLRVAILSDTKITAKDIVCLSSCKTLVKLKFFRC----EELS 1149

Query: 198  NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI------------------ 239
            ++T +  ++ LE    +  S GL+ L+    L  +    +                    
Sbjct: 1150 DVTVVYKIQSLEELIVKNCSDGLKGLNAPGTLPRLRFFASAKCERMLLVHSHGCVFLLLR 1209

Query: 240  ----SDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
                SD S+  +    SL  L ++    +TDT    L+ +T L  L L        G   
Sbjct: 1210 NVRGSDISVESIGTSKSLVRLTIEVGEDLTDT--TPLSDITSLEELSLRECGDNLGGVGT 1267

Query: 295  LRNFKNLRSLEICGGGLTDAGVKHIKDL---SSLTLLNLSQNCNLTDKTLELISGLTGLV 351
            L     L+SL++   GL+D     + D+    S+T LNLS N  LTD  +  IS LT L 
Sbjct: 1268 LEKLPRLKSLDL---GLSDISNSTLNDICLSRSITSLNLSNNYELTD--ISHISNLTALE 1322

Query: 352  SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
             LN+      ++G   L  L  LR L LES +VT
Sbjct: 1323 ELNLRGCYHITSGWEALSELPRLRVLNLESARVT 1356



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 175/428 (40%), Gaps = 82/428 (19%)

Query: 19   NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
            +  ITA+ +   +    LVKL   RC  +    V  K +  LE L +K C+      +K 
Sbjct: 1120 DTKITAKDIVCLSSCKTLVKLKFFRCEELSDVTVVYK-IQSLEELIVKNCS----DGLKG 1174

Query: 79   LSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS----------- 126
            L+    L  L+   S K     + +  G   L L N+ G  ++   + +           
Sbjct: 1175 LNAPGTLPRLRFFASAKCERMLLVHSHGCVFLLLRNVRGSDISVESIGTSKSLVRLTIEV 1234

Query: 127  ---------LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-----DECL 172
                     LS + SL  L+L  C  +  G     K+  LK L+LG ++I+     D CL
Sbjct: 1235 GEDLTDTTPLSDITSLEELSLRECGDNLGGVGTLEKLPRLKSLDLGLSDISNSTLNDICL 1294

Query: 173  V------------------HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
                               H+  LT LE LNL  C     G   L+ L  L+ L L   +
Sbjct: 1295 SRSITSLNLSNNYELTDISHISNLTALEELNLRGCYHITSGWEALSELPRLRVLNLESAR 1354

Query: 215  VGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
            V +     ++S   +L ++N+  + ++D S   +A + +L+ L++        G +AL +
Sbjct: 1355 VTTRYDGYYISRCKSLVTLNIQLSDMTDASY--IANIKTLEELHIGECDELRWGFSALFT 1412

Query: 274  LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            L  L  LDLF +RITD     LRN +   ++E                      LNLS  
Sbjct: 1413 LPRLRILDLFMSRITDED---LRNIQPPHTIE---------------------ELNLSYC 1448

Query: 334  CNLTDKT----LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 389
             NL D T    ++ I  L  L+S +    R+   G R L  L  L  + +++  V+++ +
Sbjct: 1449 ENLNDITPLGRIKSIKNLHFLLSYDA--RRLREEGFRSLLELPCLSWVGVKNAYVSSDIL 1506

Query: 390  KRLQSRDL 397
            + L+ R L
Sbjct: 1507 RELRKRRL 1514



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 180/421 (42%), Gaps = 59/421 (14%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           +S L+ L  L+      IT +G+     L+ L  LDL         L +L     LE LN
Sbjct: 320 ISQLAALEELNLNSCYHIT-KGIGTLGMLLRLRVLDLSGAPVEDNFLKDLCDCGSLERLN 378

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           + +C  I  +D+ PLS     + L ++ C ++T  G+  +  L KL +L+++   ++   
Sbjct: 379 LSYC--IQLTDINPLSNAAATEELNLNGCRRIT-RGMGVVWVLPKLRVLHMKDMHLSEPS 435

Query: 124 LDSLSALGSLFYLNLNRC----------------QLSDDGC-EKFSKIGSL--------- 157
           LDS+   G L  ++L+ C                +L+   C +  S +G L         
Sbjct: 436 LDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKCVDIISGVGCLGTLPYLVYL 495

Query: 158 ------------KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
                       +VLN+    I+      +    +L  LN++S      GL N+  L N+
Sbjct: 496 TWCGLPWYTTVPRVLNIKEAHISSLDFTGICASKSLLQLNMESIT----GLSNVEALANI 551

Query: 206 KCLELSDTQVGSSGLRHLSGL----TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261
             LE   + +G +G+  + G       L+ ++LS T   + SLR L    ++ SLNL + 
Sbjct: 552 LTLE-KLSLLGCNGIDAVIGCLGNPPQLKMLDLSGTNTDNESLRSLCLSQTMVSLNL-SH 609

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
               T ++ ++SL  L  L+L      ++G   L   + L    +    +TD  + H   
Sbjct: 610 CWKMTNMSHISSLEALNELNLSDCFEINAGWEALEKLQQLHVAILSNTHITDGDISHFSK 669

Query: 322 LSSLTLLNLSQNCNLTDKTLEL--ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             +L  L+LS      DK L++  +S +T L  LN+SN      GL  L  L  LR L +
Sbjct: 670 CKNLVTLDLS----FCDKLLDVTALSNITTLEDLNLSNCSKIRKGLSVLGELPRLRVLNV 725

Query: 380 E 380
           +
Sbjct: 726 K 726



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 11/218 (5%)

Query: 11   LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 70
            +TSL+   N  +T   +   + L  L +L+L  C  I  G   L  L +L  LN++    
Sbjct: 1298 ITSLNLSNNYELT--DISHISNLTALEELNLRGCYHITSGWEALSELPRLRVLNLESARV 1355

Query: 71   ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 130
             T  D   +S   +L +L I  S +TD+  +Y+  ++ L  L++  C        +L  L
Sbjct: 1356 TTRYDGYYISRCKSLVTLNIQLSDMTDA--SYIANIKTLEELHIGECDELRWGFSALFTL 1413

Query: 131  GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF----NEITDECLVHLKGLTNLES-LN 185
              L  L+L   +++D+         +++ LNL +    N+IT   L  +K + NL   L+
Sbjct: 1414 PRLRILDLFMSRITDEDLRNIQPPHTIEELNLSYCENLNDITP--LGRIKSIKNLHFLLS 1471

Query: 186  LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
             D+  + +EG  +L  L  L  + + +  V S  LR L
Sbjct: 1472 YDARRLREEGFRSLLELPCLSWVGVKNAYVSSDILREL 1509



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 136/327 (41%), Gaps = 23/327 (7%)

Query: 60   LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
            L +LN+ +C  ITD  +  LS +T L+ L + C      GI  L  L K  +L+++ C +
Sbjct: 887  LNTLNLAFCKDITD--VTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECYM 944

Query: 120  TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
                 +++ +LG + +  LN  + S     K   +       L  +    +C + L    
Sbjct: 945  ETDMRNNVPSLGIVSH--LNSWKASQGTYPKHEGM-------LHGDGYAQQCSI-LGNSK 994

Query: 180  NLESLNLDSCGIGDEGLVNLTGLCNLKCLE--LSDTQVGSSGLRHLSGLTNLESINLSFT 237
            +L  LNL+       G +++  L N+  LE  + D       +   S L  L  +NL +T
Sbjct: 995  SLVKLNLER----SMGFISVKALSNIATLEELVLDHAQEVCCIPSFSCLPRLRVLNLKYT 1050

Query: 238  GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             I+    + ++   SL+SLNL   + +TD  ++ L+SL+ L  L++        G   L 
Sbjct: 1051 DINGDVTKNISESKSLRSLNLSHCKWVTD--ISVLSSLSTLEELNISECEQIRKGWESLG 1108

Query: 297  NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
                LR   +    +T   +  +    +L  L   +   L+D T  ++  +  L  L V 
Sbjct: 1109 KLPLLRVAILSDTKITAKDIVCLSSCKTLVKLKFFRCEELSDVT--VVYKIQSLEELIVK 1166

Query: 357  NSRITSAGLRHLKPLKNLRSLTLESCK 383
            N      GL     L  LR      C+
Sbjct: 1167 NCSDGLKGLNAPGTLPRLRFFASAKCE 1193


>gi|300694034|ref|YP_003750007.1| type III effector protein [Ralstonia solanacearum PSI07]
 gi|299076071|emb|CBJ35381.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
           [Ralstonia solanacearum PSI07]
          Length = 629

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 145/332 (43%), Gaps = 7/332 (2%)

Query: 58  MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           + L SLN+ + N I     + L+ +  L +L +  + + D G   L     L  L L   
Sbjct: 164 LPLVSLNVSY-NQIDAEGARLLAAMPGLTTLDMCSNDIGDEGAQALAASPSLVSLKLGNN 222

Query: 118 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 177
            +      +L+    L  L++    + D G +  +   SL  LNL  NEI       L G
Sbjct: 223 RIRDQGAQALATNTRLISLDVASNSIGDMGAQALAMSPSLTSLNLASNEIGAAGADALAG 282

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
              L SLNL    I   G   L     L  L+L+  Q+G  G + L+  T L S+ L   
Sbjct: 283 NQRLTSLNLSYNQIDAAGAAALAANAVLVSLDLTKNQIGDGGAQALATNTKLTSLKLGMN 342

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
           GI     + LA  ++LKSL L   +I   G  AL     LT L++ G  + D GA  L  
Sbjct: 343 GIGPAGAQALAANTTLKSLELHLNRIGAAGARALAGNRTLTSLNVNGCALGDEGAKALAT 402

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
              LRSL +    +   G + + + ++LT L++S N         L + +  L SLN+  
Sbjct: 403 NATLRSLALHCNAIGVEGAQALAENTTLTSLDISANQLGAAGAQALATHI-ALTSLNIRC 461

Query: 358 SRITSAGLRHLKPLKNLRSLTLESCKVTANDI 389
           + I +AG R L       ++TL S  ++ N+I
Sbjct: 462 NGIRTAGARALAA-----NITLASLDISENEI 488



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 146/311 (46%), Gaps = 2/311 (0%)

Query: 36  LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 95
           LV LDL +     GG   L    KL SL +   N I  +  + L+  T LKSL++  +++
Sbjct: 310 LVSLDLTKNQIGDGGAQALATNTKLTSLKLGM-NGIGPAGAQALAANTTLKSLELHLNRI 368

Query: 96  TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 155
             +G   L G + LT LN+ GC +      +L+   +L  L L+   +  +G +  ++  
Sbjct: 369 GAAGARALAGNRTLTSLNVNGCALGDEGAKALATNATLRSLALHCNAIGVEGAQALAENT 428

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
           +L  L++  N++       L     L SLN+   GI   G   L     L  L++S+ ++
Sbjct: 429 TLTSLDISANQLGAAGAQALATHIALTSLNIRCNGIRTAGARALAANITLASLDISENEI 488

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
           G++G + L+    L S+N+   GI D   + LA  + L  L   + Q+   G  AL + T
Sbjct: 489 GAAGAQALAANITLTSLNVGRNGIRDAGAQALARNAKLTELYASSNQLGVAGAQALAANT 548

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            LT L L    I D GA  L     L SLE+   G+ DAG + +   ++L  L +  N  
Sbjct: 549 TLTSLTLNNNAIGDEGARALAGNTALISLEVLDCGIGDAGARALAANTTLAFLRVIYNGA 608

Query: 336 L-TDKTLELIS 345
           +  +  LEL++
Sbjct: 609 IGQNARLELMA 619



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 172/412 (41%), Gaps = 51/412 (12%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ +  LT+L    N+ I  +G +A A   +LV L L        G   L    +L SL+
Sbjct: 184 LAAMPGLTTLDMCSND-IGDEGAQALAASPSLVSLKLGNNRIRDQGAQALATNTRLISLD 242

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N I D   + L+   +L SL ++ +++  +G   L G Q+LT LNL    + AA  
Sbjct: 243 VA-SNSIGDMGAQALAMSPSLTSLNLASNEIGAAGADALAGNQRLTSLNLSYNQIDAAGA 301

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            +L+A   L  L+L + Q+ D G +  +    L  L LG N I       L   T L+SL
Sbjct: 302 AALAANAVLVSLDLTKNQIGDGGAQALATNTKLTSLKLGMNGIGPAGAQALAANTTLKSL 361

Query: 185 ------------------------NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
                                   N++ C +GDEG   L     L+ L L    +G  G 
Sbjct: 362 ELHLNRIGAAGARALAGNRTLTSLNVNGCALGDEGAKALATNATLRSLALHCNAIGVEGA 421

Query: 221 RHLSGLTNLESINLSF------------------------TGISDGSLRKLAGLSSLKSL 256
           + L+  T L S+++S                          GI     R LA   +L SL
Sbjct: 422 QALAENTTLTSLDISANQLGAAGAQALATHIALTSLNIRCNGIRTAGARALAANITLASL 481

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
           ++   +I   G  AL +   LT L++    I D+GA  L     L  L      L  AG 
Sbjct: 482 DISENEIGAAGAQALAANITLTSLNVGRNGIRDAGAQALARNAKLTELYASSNQLGVAGA 541

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
           + +   ++LT L L+ N  + D+    ++G T L+SL V +  I  AG R L
Sbjct: 542 QALAANTTLTSLTLNNNA-IGDEGARALAGNTALISLEVLDCGIGDAGARAL 592



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 160/351 (45%), Gaps = 6/351 (1%)

Query: 20  NAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMK 77
           N I A+G +  A +  L  LD+  C+   G  G   L     L SL +   N I D   +
Sbjct: 174 NQIDAEGARLLAAMPGLTTLDM--CSNDIGDEGAQALAASPSLVSLKLG-NNRIRDQGAQ 230

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
            L+  T L SL ++ + + D G   L     LT LNL    + AA  D+L+    L  LN
Sbjct: 231 ALATNTRLISLDVASNSIGDMGAQALAMSPSLTSLNLASNEIGAAGADALAGNQRLTSLN 290

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           L+  Q+   G    +    L  L+L  N+I D     L   T L SL L   GIG  G  
Sbjct: 291 LSYNQIDAAGAAALAANAVLVSLDLTKNQIGDGGAQALATNTKLTSLKLGMNGIGPAGAQ 350

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
            L     LK LEL   ++G++G R L+G   L S+N++   + D   + LA  ++L+SL 
Sbjct: 351 ALAANTTLKSLELHLNRIGAAGARALAGNRTLTSLNVNGCALGDEGAKALATNATLRSLA 410

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 317
           L    I   G  AL   T LT LD+   ++  +GA  L     L SL I   G+  AG +
Sbjct: 411 LHCNAIGVEGAQALAENTTLTSLDISANQLGAAGAQALATHIALTSLNIRCNGIRTAGAR 470

Query: 318 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368
            +    +L  L++S+N         L + +T L SLNV  + I  AG + L
Sbjct: 471 ALAANITLASLDISENEIGAAGAQALAANIT-LTSLNVGRNGIRDAGAQAL 520



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 81/194 (41%), Gaps = 33/194 (17%)

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELS--DTQVGSSGLRHLSGL 226
           + L H      LE L L     GD    +L GL  +LK L L     ++ S G+ HLS L
Sbjct: 109 KALKHPGAYAALERLVL----AGDFTDRDLEGLPVSLKELNLCGCHARITSRGIAHLSRL 164

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
             L S+N+S+  I     R LA +  L +L++ +  I D G  AL +   L  L L   R
Sbjct: 165 P-LVSLNVSYNQIDAEGARLLAAMPGLTTLDMCSNDIGDEGAQALAASPSLVSLKLGNNR 223

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           I D GA  L     L SL++    + D G + +    SLT                    
Sbjct: 224 IRDQGAQALATNTRLISLDVASNSIGDMGAQALAMSPSLT-------------------- 263

Query: 347 LTGLVSLNVSNSRI 360
                SLN++++ I
Sbjct: 264 -----SLNLASNEI 272


>gi|290983004|ref|XP_002674219.1| predicted protein [Naegleria gruberi]
 gi|284087808|gb|EFC41475.1| predicted protein [Naegleria gruberi]
          Length = 293

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 94/183 (51%), Gaps = 3/183 (1%)

Query: 199 LTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
           +T +  L  L++S+ ++G  +    +S +  L S N+S   I D + + +  +  L SL+
Sbjct: 101 ITEMKQLTSLDISNNRIGYVTAESIISEMKQLTSFNISGNSIDDETAKSITEMKQLTSLD 160

Query: 258 LDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316
           +    I D T  + ++ +  LT  ++ G  I D GA  +   K L SL +   G+  AG 
Sbjct: 161 ISNNGIGDETAESIISEMKQLTSFNIGGNIIGDEGAKSISEMKQLTSLSVNNSGIGVAGA 220

Query: 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
           K I ++  LTLL++ +N +      + IS +  L SLN+  + +   G++++  +K L S
Sbjct: 221 KFISEMKQLTLLDIGENSSGVAGA-KFISEMKQLTSLNIGGNSVGVEGIKYISEMKQLTS 279

Query: 377 LTL 379
           LT+
Sbjct: 280 LTI 282



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 5/177 (2%)

Query: 156 SLKVLNLGFNEITDECLV-HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
           SL + N     +T E ++  +K LT   S N+    I DE   ++T +  L  L++S+  
Sbjct: 109 SLDISNNRIGYVTAESIISEMKQLT---SFNISGNSIDDETAKSITEMKQLTSLDISNNG 165

Query: 215 VGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273
           +G      + S +  L S N+    I D   + ++ +  L SL+++   I   G   ++ 
Sbjct: 166 IGDETAESIISEMKQLTSFNIGGNIIGDEGAKSISEMKQLTSLSVNNSGIGVAGAKFISE 225

Query: 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330
           +  LT LD+       +GA ++   K L SL I G  +   G+K+I ++  LT L +
Sbjct: 226 MKQLTLLDIGENSSGVAGAKFISEMKQLTSLNIGGNSVGVEGIKYISEMKQLTSLTI 282



 Score = 38.5 bits (88), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 2/158 (1%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLE 115
           + +L S NI   N I D   K ++ +  L SL IS + + D +  + +  +++LT  N+ 
Sbjct: 129 MKQLTSFNIS-GNSIDDETAKSITEMKQLTSLDISNNGIGDETAESIISEMKQLTSFNIG 187

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 175
           G  +      S+S +  L  L++N   +   G +  S++  L +L++G N         +
Sbjct: 188 GNIIGDEGAKSISEMKQLTSLSVNNSGIGVAGAKFISEMKQLTLLDIGENSSGVAGAKFI 247

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
             +  L SLN+    +G EG+  ++ +  L  L + ++
Sbjct: 248 SEMKQLTSLNIGGNSVGVEGIKYISEMKQLTSLTIYNS 285


>gi|115689700|ref|XP_783241.2| PREDICTED: F-box/LRR-repeat protein 13-like [Strongylocentrotus
           purpuratus]
          Length = 871

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 201/453 (44%), Gaps = 73/453 (16%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLE 61
           N+ G S LT  SF           KA     NL  L++  C  ++   +    +G   L 
Sbjct: 305 NIKGCSMLTKPSF-----------KAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSVLL 353

Query: 62  SLNIKWCNCITDSDMKPLSGL-TNLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNLEG 116
            LNI + N ITD+ ++ L+   +NL+ L ++ C + +D G+ YL   +G ++L  L+L G
Sbjct: 354 YLNISFTN-ITDATLRLLARCCSNLQYLSLAYCKRFSDKGLQYLGTGRGGRRLVHLDLSG 412

Query: 117 CP-VTAACLDSLSA-LGSLFYLNLNRCQ-LSDD-------GCEKFSKIGSLKVLNLGFNE 166
           CP +T     ++S     L +L +N C  L DD        C     I  L   N     
Sbjct: 413 CPQITVNGYKNISGGCPKLQHLIINDCYTLRDDMIVAVAANCHNIRCISFLYTPN----- 467

Query: 167 ITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLC-NLKCLELSD-TQVGSSGLRHL 223
           ITD  L  L     L+ + ++ +C I D     L   C +L+ + +SD  ++  + L+ L
Sbjct: 468 ITDVALKALAVHRKLQQIRIEGNCKITDASFKLLGRYCVDLRHIYVSDCPRITDAALKSL 527

Query: 224 SGLTNLESINLS-FTGISDGSLRKLAGLSS---LKSLNL-DARQITDTGLAALTS-LTGL 277
           +   N+  +N++    ISD  +R L    S   L+ +NL +  ++TD  +  +T     L
Sbjct: 528 ATCRNINVLNVADCIRISDNGVRNLVEGPSGPKLREMNLTNCVRVTDVSIMKITQKCYSL 587

Query: 278 THLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV------KHIKD--------L 322
            +    F   ITD+GA  L N   L SL+I G  +TD G+       H++D        +
Sbjct: 588 VYGSFCFSEHITDAGAEMLGNMPALSSLDISGCNITDTGLGALGNCYHLRDVVLSECHQI 647

Query: 323 SSLTLLNLSQNC------------NLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL 368
           + L +   +Q C             LTD+ ++ L      L  LN++  S+++   +R++
Sbjct: 648 TDLGIQKFAQQCRDLDRLDISHCLQLTDQAIKNLAFCCRKLSFLNIAGCSQLSDMSIRYI 707

Query: 369 KPL-KNLRSLTLESCKVTANDIKRLQSRDLPNL 400
             +   L+SL    C   ++D  R   + L  L
Sbjct: 708 SGVCHYLQSLNFSGCIKVSDDSMRFLRKGLKRL 740



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 172/369 (46%), Gaps = 38/369 (10%)

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVT 120
           LNIK C+ +T    K +    NL+ L +S C  + D  + Y+ +G   L  LN+    +T
Sbjct: 304 LNIKGCSMLTKPSFKAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSVLLYLNISFTNIT 363

Query: 121 AACLDSLSALGS-LFYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNL---GFNEITDECLVH 174
            A L  L+   S L YL+L  C+  SD G +   +  G  ++++L   G  +IT     +
Sbjct: 364 DATLRLLARCCSNLQYLSLAYCKRFSDKGLQYLGTGRGGRRLVHLDLSGCPQITVNGYKN 423

Query: 175 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLE-LSDTQVGSSGLRHLSGLTNLE 230
           +  G   L+ L ++ C  + D+ +V +   C N++C+  L    +    L+ L+    L+
Sbjct: 424 ISGGCPKLQHLIINDCYTLRDDMIVAVAANCHNIRCISFLYTPNITDVALKALAVHRKLQ 483

Query: 231 SINLSFT-GISDGSLRKLAGLS-SLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-R 286
            I +     I+D S + L      L+ + + D  +ITD  L +L +   +  L++    R
Sbjct: 484 QIRIEGNCKITDASFKLLGRYCVDLRHIYVSDCPRITDAALKSLATCRNINVLNVADCIR 543

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC------------ 334
           I+D+G   +RN     S    G  L +  + +   ++ ++++ ++Q C            
Sbjct: 544 ISDNG---VRNLVEGPS----GPKLREMNLTNCVRVTDVSIMKITQKCYSLVYGSFCFSE 596

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL- 392
           ++TD   E++  +  L SL++S   IT  GL  L    +LR + L  C ++T   I++  
Sbjct: 597 HITDAGAEMLGNMPALSSLDISGCNITDTGLGALGNCYHLRDVVLSECHQITDLGIQKFA 656

Query: 393 -QSRDLPNL 400
            Q RDL  L
Sbjct: 657 QQCRDLDRL 665


>gi|87308228|ref|ZP_01090370.1| hypothetical protein DSM3645_21562 [Blastopirellula marina DSM
           3645]
 gi|87289310|gb|EAQ81202.1| hypothetical protein DSM3645_21562 [Blastopirellula marina DSM
           3645]
          Length = 438

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 141/294 (47%), Gaps = 11/294 (3%)

Query: 50  GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 109
           GL  L+ L ++E  ++     I  + +  L GL NL    I  S++        +   +L
Sbjct: 133 GLEELRKLEQVEFTDL----VINQAVIGGLRGLPNLNQFNIRNSELALPWALDERSFPQL 188

Query: 110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRC---QLSDDGCEKFSKIGSLKVLNLGFNE 166
             L ++G    AA +  + ++ +L  L L+ C   Q + +   + + + +L  L+L  + 
Sbjct: 189 KTLLIDGGKADAALIGEVCSIPTLQQLQLS-CPVGQFTINDFRRLADLPNLVDLSLVRSS 247

Query: 167 ITDE-CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
           + DE C +  + L  ++ LN+   GIG++ L  +    NL+ L+L+ +++   GL +LS 
Sbjct: 248 LPDESCPLATQQL-KIQKLNVGQTGIGNQFLSTIGDFPNLRELDLTGSKITDGGLAYLSE 306

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 285
           L+ LES+ LS T IS  + +  + L SL+ L+L   ++    +  +  L  L  +DL  +
Sbjct: 307 LSQLESLTLSETNISSAAAKHFSQLQSLRELHLHNTKLDGQAMVDIAKLKNLEWIDLSKS 366

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
            +       LR    LR + +    +  A + ++K L  +  + + +  NLT++
Sbjct: 367 NVQGEQLLELRKLPKLRGVVLMNTPIGAADLPYLKQLYHIDEIYV-EETNLTNE 419



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 150/338 (44%), Gaps = 10/338 (2%)

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 132
           D  ++ ++ L+ LK+L I+ +K +      L+ L+KL  +      +  A +  L  L +
Sbjct: 104 DKGIRVVTTLSPLKALLIAKTKASSDSFFGLEELRKLEQVEFTDLVINQAVIGGLRGLPN 163

Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192
           L   N+   +L+            LK L +   +     +  +  +  L+ L L SC +G
Sbjct: 164 LNQFNIRNSELALPWALDERSFPQLKTLLIDGGKADAALIGEVCSIPTLQQLQL-SCPVG 222

Query: 193 D---EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249
                    L  L NL  L L  + +        +    ++ +N+  TGI +  L  +  
Sbjct: 223 QFTINDFRRLADLPNLVDLSLVRSSLPDESCPLATQQLKIQKLNVGQTGIGNQFLSTIGD 282

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
             +L+ L+L   +ITD GLA L+ L+ L  L L    I+ + A +    ++LR L +   
Sbjct: 283 FPNLRELDLTGSKITDGGLAYLSELSQLESLTLSETNISSAAAKHFSQLQSLRELHLHNT 342

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL--ISGLTGLVSLNVSNSRITSAGLRH 367
            L    +  I  L +L  ++LS++    ++ LEL  +  L G+V   + N+ I +A L +
Sbjct: 343 KLDGQAMVDIAKLKNLEWIDLSKSNVQGEQLLELRKLPKLRGVV---LMNTPIGAADLPY 399

Query: 368 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 405
           LK L ++  + +E   +T  +  +L    L    ++RP
Sbjct: 400 LKQLYHIDEIYVEETNLTNEEQIKLHEA-LAKARNYRP 436


>gi|226222899|ref|YP_002757006.1| internalin E [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|254853463|ref|ZP_05242811.1| internalin E [Listeria monocytogenes FSL R2-503]
 gi|300764605|ref|ZP_07074597.1| internalin E [Listeria monocytogenes FSL N1-017]
 gi|386731036|ref|YP_006204532.1| internalin E [Listeria monocytogenes 07PF0776]
 gi|404279820|ref|YP_006680718.1| internalin E [Listeria monocytogenes SLCC2755]
 gi|404285637|ref|YP_006692223.1| internalin E [Listeria monocytogenes serotype 7 str. SLCC2482]
 gi|406703044|ref|YP_006753398.1| internalin E (LPXTG motif) [Listeria monocytogenes L312]
 gi|225875361|emb|CAS04058.1| internalin E [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258606834|gb|EEW19442.1| internalin E [Listeria monocytogenes FSL R2-503]
 gi|300514712|gb|EFK41767.1| internalin E [Listeria monocytogenes FSL N1-017]
 gi|384389794|gb|AFH78864.1| internalin E [Listeria monocytogenes 07PF0776]
 gi|404226455|emb|CBY47860.1| internalin E (LPXTG motif) [Listeria monocytogenes SLCC2755]
 gi|404244566|emb|CBY02791.1| internalin E (LPXTG motif) [Listeria monocytogenes serotype 7 str.
           SLCC2482]
 gi|406360074|emb|CBY66347.1| internalin E (LPXTG motif) [Listeria monocytogenes L312]
          Length = 499

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 38/216 (17%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +  LTNL  L+++ +++TD  ++ L  L K+T L L G P     L  +SAL  L     
Sbjct: 92  MQYLTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL----- 139

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
                            SLK+L+L + +ITD  +  L GLTNL+ LNLD   I D  +  
Sbjct: 140 ----------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISP 179

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L  L NL+ L L  TQV  S L  ++ L+ L  +N     +SD  +  LA LSSL  + L
Sbjct: 180 LAALSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYL 235

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
              QI+D  ++ L ++  L+ ++L    IT+    Y
Sbjct: 236 RENQISD--VSPLANIPNLSIIELTDQIITNQPVYY 269



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 51/212 (24%)

Query: 177 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 227
           G+T +E +    NL    + D  + +++ L NL  +    T++G SG     +  L+GL 
Sbjct: 85  GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 140

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           +L+ ++L +T I+D  +  LAGL++L+ LNLD  QITD  ++ L +L+ L  L L   ++
Sbjct: 141 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 196

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           +D                          +  I +LS LT+LN ++NC ++D     IS L
Sbjct: 197 SD--------------------------LTPIANLSKLTILN-AENCKVSD-----ISPL 224

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             L SL  +   +    +  + PL N+ +L++
Sbjct: 225 ASLSSL--TEVYLRENQISDVSPLANIPNLSI 254



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 27/141 (19%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ----- 107
           L GL  L+ L++ + +    +D+  L+GLTNL+ L +  +++TD S +A L  LQ     
Sbjct: 136 LAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSLG 192

Query: 108 --------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
                         KLT+LN E C V  + +  L++L SL  + L   Q+SD      + 
Sbjct: 193 YTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLAN 248

Query: 154 IGSLKVLNLGFNEITDECLVH 174
           I +L ++ L    IT++ + +
Sbjct: 249 IPNLSIIELTDQIITNQPVYY 269


>gi|335429117|ref|ZP_08556021.1| Rab family protein [Haloplasma contractile SSD-17B]
 gi|334890533|gb|EGM28798.1| Rab family protein [Haloplasma contractile SSD-17B]
          Length = 1202

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 182/373 (48%), Gaps = 45/373 (12%)

Query: 24   AQGMKAFAGL--INLVKLDLERCTRI------------HGGLVNLKGLMKLESLNIKWCN 69
             +G++ F  L  I+L+  D+   T +            +    +L  L  +++L   W  
Sbjct: 805  VEGLQYFTNLTKIDLLYNDISDITPLENLPLLEDINLNNNNFSDLSSLQNIKTLKNLWLE 864

Query: 70   CITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
                +D+  L+ L+NL SL +S ++V+D + +  L  LQ + L N +         ++ S
Sbjct: 865  NNNITDLSVLANLSNLDSLYLSNNQVSDLTPLINLANLQNVYLSNNQ----VTTLPENFS 920

Query: 129  ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
             + +L  L+L+  Q++D      S   +L  L+L  N+ITD  L +   LT L SLNL+ 
Sbjct: 921  NMLNLNGLHLSGNQITD--VTPLSTAPALIELDLSNNQITD--LTNYDLLTYLFSLNLND 976

Query: 189  CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
              I D  L  L  L  L  L L++ Q+  S L  L GLTNL  +      ISD  L  L 
Sbjct: 977  NSISD--LTPLANLTKLSSLRLNNNQI--SDLTPLGGLTNLTHLYAENNAISD--LTPLT 1030

Query: 249  GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEI 306
             L+ +  L L+  QI+D  L AL+SLT L++L +   +ITD     L   +NLR   L++
Sbjct: 1031 NLNKIWYLVLNGNQISD--LTALSSLTDLSYLRMNNNQITD-----LSPLQNLRLSDLQL 1083

Query: 307  CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
                ++D  + ++ + +S++ L L  N  ++D  + +IS  TGL +L + ++ I  + L 
Sbjct: 1084 NNNLISD--LSYLANSTSISKL-LLNNNQISD--ISVISNFTGLRTLELDDNMI--SDLS 1136

Query: 367  HLKPLKNLRSLTL 379
             L    NL  L L
Sbjct: 1137 ALSSQTNLELLYL 1149


>gi|405754355|ref|YP_006677819.1| internalin E [Listeria monocytogenes SLCC2540]
 gi|404223555|emb|CBY74917.1| internalin E (LPXTG motif) [Listeria monocytogenes SLCC2540]
          Length = 499

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 38/216 (17%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +  LTNL  L+++ +++TD  ++ L  L K+T L L G P     L  +SAL  L     
Sbjct: 92  MQYLTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL----- 139

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
                            SLK+L+L + +ITD  +  L GLTNL+ LNLD   I D  +  
Sbjct: 140 ----------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISP 179

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L  L NL+ L L  TQV  S L  ++ L+ L  +N     +SD  +  LA LSSL  + L
Sbjct: 180 LAALSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYL 235

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
              QI+D  ++ L ++  L+ ++L    IT+    Y
Sbjct: 236 RENQISD--VSPLANIPNLSIIELTDQIITNQPVYY 269



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 51/212 (24%)

Query: 177 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 227
           G+T +E +    NL    + D  + +++ L NL  +    T++G SG     +  L+GL 
Sbjct: 85  GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 140

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           +L+ ++L +T I+D  +  LAGL++L+ LNLD  QITD  ++ L +L+ L  L L   ++
Sbjct: 141 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 196

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           +D                          +  I +LS LT+LN ++NC ++D     IS L
Sbjct: 197 SD--------------------------LTPIANLSKLTILN-AENCKVSD-----ISPL 224

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             L SL  +   +    +  + PL N+ +L++
Sbjct: 225 ASLSSL--TEVYLRENQISDVSPLANIPNLSI 254



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 27/141 (19%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ----- 107
           L GL  L+ L++ + +    +D+  L+GLTNL+ L +  +++TD S +A L  LQ     
Sbjct: 136 LAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSLG 192

Query: 108 --------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
                         KLT+LN E C V  + +  L++L SL  + L   Q+SD      + 
Sbjct: 193 YTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLAN 248

Query: 154 IGSLKVLNLGFNEITDECLVH 174
           I +L ++ L    IT++ + +
Sbjct: 249 IPNLSIIELTDQIITNQPVYY 269


>gi|46906504|ref|YP_012893.1| internalin E [Listeria monocytogenes serotype 4b str. F2365]
 gi|254825685|ref|ZP_05230686.1| internalin E [Listeria monocytogenes FSL J1-194]
 gi|405751488|ref|YP_006674953.1| internalin E [Listeria monocytogenes SLCC2378]
 gi|424713136|ref|YP_007013851.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
 gi|46879769|gb|AAT03070.1| internalin E [Listeria monocytogenes serotype 4b str. F2365]
 gi|293594929|gb|EFG02690.1| internalin E [Listeria monocytogenes FSL J1-194]
 gi|404220688|emb|CBY72051.1| internalin E (LPXTG motif) [Listeria monocytogenes SLCC2378]
 gi|424012320|emb|CCO62860.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
          Length = 499

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 38/216 (17%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +  LTNL  L+++ +++TD  ++ L  L K+T L L G P     L  +SAL  L     
Sbjct: 92  MQYLTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL----- 139

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
                            SLK+L+L + +ITD  +  L GLTNL+ LNLD   I D  +  
Sbjct: 140 ----------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISP 179

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L  L NL+ L L  TQV  S L  ++ L+ L  +N     +SD  +  LA LSSL  + L
Sbjct: 180 LAALSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYL 235

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
              QI+D  ++ L ++  L+ ++L    IT+    Y
Sbjct: 236 RENQISD--VSPLANIPNLSIIELTDQIITNQPVYY 269



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 51/212 (24%)

Query: 177 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 227
           G+T +E +    NL    + D  + +++ L NL  +    T++G SG     +  L+GL 
Sbjct: 85  GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 140

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           +L+ ++L +T I+D  +  LAGL++L+ LNLD  QITD  ++ L +L+ L  L L   ++
Sbjct: 141 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 196

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           +D                          +  I +LS LT+LN ++NC ++D     IS L
Sbjct: 197 SD--------------------------LTPIANLSKLTILN-AENCKVSD-----ISPL 224

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             L SL  +   +    +  + PL N+ +L++
Sbjct: 225 ASLSSL--TEVYLRENQISDVSPLANIPNLSI 254



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 27/141 (19%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ----- 107
           L GL  L+ L++ + +    +D+  L+GLTNL+ L +  +++TD S +A L  LQ     
Sbjct: 136 LAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSLG 192

Query: 108 --------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
                         KLT+LN E C V  + +  L++L SL  + L   Q+SD      + 
Sbjct: 193 YTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLAN 248

Query: 154 IGSLKVLNLGFNEITDECLVH 174
           I +L ++ L    IT++ + +
Sbjct: 249 IPNLSIIELTDQIITNQPVYY 269


>gi|83629901|gb|ABC26612.1| internalin E [Listeria monocytogenes]
 gi|83629911|gb|ABC26617.1| internalin E [Listeria monocytogenes]
 gi|83629913|gb|ABC26618.1| internalin E [Listeria monocytogenes]
 gi|83629921|gb|ABC26622.1| internalin E [Listeria monocytogenes]
 gi|83629929|gb|ABC26626.1| internalin E [Listeria monocytogenes]
 gi|83629939|gb|ABC26631.1| internalin E [Listeria monocytogenes]
 gi|83629961|gb|ABC26642.1| internalin E [Listeria monocytogenes]
          Length = 498

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 38/216 (17%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +  LTNL  L+++ +++TD  ++ L  L K+T L L G P     L  +SAL  L     
Sbjct: 91  MQYLTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL----- 138

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
                            SLK+L+L + +ITD  +  L GLTNL+ LNLD   I D  +  
Sbjct: 139 ----------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISP 178

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L  L NL+ L L  TQV  S L  ++ L+ L  +N     +SD  +  LA LSSL  + L
Sbjct: 179 LAALSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYL 234

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
              QI+D  ++ L ++  L+ ++L    IT+    Y
Sbjct: 235 RENQISD--VSPLANIPNLSIIELTDQIITNQPVYY 268



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 51/212 (24%)

Query: 177 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 227
           G+T +E +    NL    + D  + +++ L NL  +    T++G SG     +  L+GL 
Sbjct: 84  GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 139

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           +L+ ++L +T I+D  +  LAGL++L+ LNLD  QITD  ++ L +L+ L  L L   ++
Sbjct: 140 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 195

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           +D                          +  I +LS LT+LN ++NC ++D     IS L
Sbjct: 196 SD--------------------------LTPIANLSKLTILN-AENCKVSD-----ISPL 223

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             L SL  +   +    +  + PL N+ +L++
Sbjct: 224 ASLSSL--TEVYLRENQISDVSPLANIPNLSI 253



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 27/141 (19%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ----- 107
           L GL  L+ L++ + +    +D+  L+GLTNL+ L +  +++TD S +A L  LQ     
Sbjct: 135 LAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSLG 191

Query: 108 --------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
                         KLT+LN E C V  + +  L++L SL  + L   Q+SD      + 
Sbjct: 192 YTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLAN 247

Query: 154 IGSLKVLNLGFNEITDECLVH 174
           I +L ++ L    IT++ + +
Sbjct: 248 IPNLSIIELTDQIITNQPVYY 268


>gi|440795996|gb|ELR17105.1| leucine rich repeat domain containing protein [Acanthamoeba
           castellanii str. Neff]
          Length = 811

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 141/307 (45%), Gaps = 23/307 (7%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLE-----RCTRIHGGLVNLKGLMKLESLNIK-WCNCIT 72
           N      G+K  +   ++ +LDL       C R+   +  ++GL    SLN++ + + ++
Sbjct: 87  NMGFALSGLKVLSRFAHVARLDLSGQKALDCRRVGPVIARMRGLT---SLNLRRYPHHLS 143

Query: 73  DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLSALG 131
            +DMK ++GLT L  L +S S+V D+    L GL   LT L++  C      L +L  L 
Sbjct: 144 LADMKSIAGLTGLAELNLSRSRVEDAHANLLAGLSSSLTSLDISRCRGLRGDLWALPKLT 203

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG 190
            L  LN++   L     +   ++ SL  LN    N + D     L GLT LE L+L +  
Sbjct: 204 QLRALNISSVDLLPLVLDYVDQMSSLVRLNASMSNWLRDTS--RLAGLTQLEDLDLANVS 261

Query: 191 -IGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKL- 247
            + DE L  L  L  L+ L L  T +   GL   L+ L NLE ++LS T  S    + L 
Sbjct: 262 RMTDESLEGLQSLTRLRRLNLKGTDLSDYGLTMFLTNLHNLELLDLSNTAASKAPKKLLD 321

Query: 248 -AGLSSLKSLNL--DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
              L SL+ +NL  + R  T+  L A+  L  + +   F     D+ A    + +  R  
Sbjct: 322 QGRLPSLRQVNLIQNYRAFTEGDLMAIKKLRVMCNWTSF----QDTVAWTFESSETTRDP 377

Query: 305 EICGGGL 311
           ++C   L
Sbjct: 378 DLCARWL 384



 Score = 38.5 bits (88), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 5/186 (2%)

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNLDARQITDTGLAALTSLTG 276
           + ++ ++GLT L  +NLS + + D     LAGLSS L SL++   +     L AL  LT 
Sbjct: 145 ADMKSIAGLTGLAELNLSRSRVEDAHANLLAGLSSSLTSLDISRCRGLRGDLWALPKLTQ 204

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
           L  L++    +      Y+    +L  L       L D     +  L+ L  L+L+    
Sbjct: 205 LRALNISSVDLLPLVLDYVDQMSSLVRLNASMSNWLRDTS--RLAGLTQLEDLDLANVSR 262

Query: 336 LTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTANDIKRLQS 394
           +TD++LE +  LT L  LN+  + ++  GL   L  L NL  L L +   +    K L  
Sbjct: 263 MTDESLEGLQSLTRLRRLNLKGTDLSDYGLTMFLTNLHNLELLDLSNTAASKAPKKLLDQ 322

Query: 395 RDLPNL 400
             LP+L
Sbjct: 323 GRLPSL 328



 Score = 38.1 bits (87), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 34/168 (20%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLDLERCTRIHGGLVNLKGLMKLE 61
           ++++GL+ L  L+  R+    A      AGL + L  LD+ RC  + G L  L  L +L 
Sbjct: 148 KSIAGLTGLAELNLSRSRVEDAHA-NLLAGLSSSLTSLDISRCRGLRGDLWALPKLTQLR 206

Query: 62  SLNIKWCNCI------TDS----------------DMKPLSGLTNLKSLQIS-CSKVTDS 98
           +LNI   + +       D                 D   L+GLT L+ L ++  S++TD 
Sbjct: 207 ALNISSVDLLPLVLDYVDQMSSLVRLNASMSNWLRDTSRLAGLTQLEDLDLANVSRMTDE 266

Query: 99  GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSD 145
            +  L+ L +L  LNL+G          LS  G ++F  NL+  +L D
Sbjct: 267 SLEGLQSLTRLRRLNLKGT--------DLSDYGLTMFLTNLHNLELLD 306


>gi|299067412|emb|CBJ38611.1| leucine-rich-repeat type III effector protein (GALA7) [Ralstonia
           solanacearum CMR15]
          Length = 642

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 149/320 (46%), Gaps = 43/320 (13%)

Query: 124 LDSLSALG-SLFYLNLNRCQLSDDGCEKFSKI---------------GSLKVLNLGFNEI 167
           LD L AL  +L +L+L+ C + + G +  + I                 L+ LN+    I
Sbjct: 178 LDELKALPKTLRHLDLSECDV-NSGAKSHAAIEYLTTVSPHTRTVPFPHLESLNVKGARI 236

Query: 168 TDECLVHLKG-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
            D     L   +++L++LN+   GI + G   L    +L+ L++S  ++ + G +HL+  
Sbjct: 237 GDRGAALLADKMSSLKTLNVADGGISEVGAKKLADHKSLESLDMSGNRIDARGAQHLAAS 296

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL---- 282
            +++++ L   G++D  +  LAG   L SL++    I D  L AL +   L  LD+    
Sbjct: 297 ESIKTLRLCCCGVTDPGIHALAGNPRLTSLDVSGNYIGDEALHALAASPSLAELDVSCNR 356

Query: 283 ------FGARITDSGA-------AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
                  G R+T++G          L+  K L SL+  G    D   + +    + T L+
Sbjct: 357 PFTTIPLGQRVTEAGEMAVALALGLLKREKPLVSLKADGNYFDDTAAEMLAYPPNGT-LS 415

Query: 330 LSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           LS   NL +    + ++    L SL+++ ++I  AG+  L   ++LR L + +C+VT   
Sbjct: 416 LSLKSNLIEAAGAQKLAENPTLKSLDLTQNKIDDAGVEALASSRSLRELVVRNCRVTDTG 475

Query: 389 I------KRLQSRDLPNLVS 402
           +      + L S DL NLV+
Sbjct: 476 VAALARNRTLTSLDLGNLVT 495



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 146/375 (38%), Gaps = 57/375 (15%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           M   L    NL SL  R N  IT   +KA      L  LDL  C    G     K    +
Sbjct: 157 MLNRLHHYPNLQSLRLRGN--ITLDELKALPK--TLRHLDLSECDVNSGA----KSHAAI 208

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           E L     +  T           +L+SL +  +++ D G A L                 
Sbjct: 209 EYLTTVSPHTRT-------VPFPHLESLNVKGARIGDRGAALLA---------------- 245

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
               D +S   SL  LN+    +S+ G +K +   SL+ L++  N I      HL    +
Sbjct: 246 ----DKMS---SLKTLNVADGGISEVGAKKLADHKSLESLDMSGNRIDARGAQHLAASES 298

Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS----F 236
           +++L L  CG+ D G+  L G   L  L++S   +G   L  L+   +L  +++S    F
Sbjct: 299 IKTLRLCCCGVTDPGIHALAGNPRLTSLDVSGNYIGDEALHALAASPSLAELDVSCNRPF 358

Query: 237 TGISDGSLRKLAG-------------LSSLKSLNLDARQITDTGLAALT-SLTGLTHLDL 282
           T I  G     AG                L SL  D     DT    L     G   L L
Sbjct: 359 TTIPLGQRVTEAGEMAVALALGLLKREKPLVSLKADGNYFDDTAAEMLAYPPNGTLSLSL 418

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
               I  +GA  L     L+SL++    + DAGV+ +    SL  L + +NC +TD  + 
Sbjct: 419 KSNLIEAAGAQKLAENPTLKSLDLTQNKIDDAGVEALASSRSLREL-VVRNCRVTDTGVA 477

Query: 343 LISGLTGLVSLNVSN 357
            ++    L SL++ N
Sbjct: 478 ALARNRTLTSLDLGN 492



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 147/351 (41%), Gaps = 57/351 (16%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           LESL++   N I     + L+   ++K+L++ C  VTD GI  L G  +LT L++ G  +
Sbjct: 275 LESLDMSG-NRIDARGAQHLAASESIKTLRLCCCGVTDPGIHALAGNPRLTSLDVSGNYI 333

Query: 120 TAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFSKIGSLKV-LNLGFNEITDECLVHLK 176
               L +L+A  SL  L++  NR   +    ++ ++ G + V L LG           LK
Sbjct: 334 GDEALHALAASPSLAELDVSCNRPFTTIPLGQRVTEAGEMAVALALGL----------LK 383

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLK-CLELSDTQVGSSGLRHLSGLTNLESINLS 235
               L SL  D     D     L    N    L L    + ++G + L+    L+S++L+
Sbjct: 384 REKPLVSLKADGNYFDDTAAEMLAYPPNGTLSLSLKSNLIEAAGAQKLAENPTLKSLDLT 443

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------------- 282
              I D  +  LA   SL+ L +   ++TDTG+AAL     LT LDL             
Sbjct: 444 QNKIDDAGVEALASSRSLRELVVRNCRVTDTGVAALARNRTLTSLDLGNLVTETENEAEQ 503

Query: 283 -----FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI---KDLSSL--------- 325
                    I+  GA  L   + L SL I G    DAGV  +   + L+SL         
Sbjct: 504 ADYDKTANEISGDGAGLLAQNRTLTSLSIQGNLCGDAGVLELAKNRTLTSLNVAFTNMTP 563

Query: 326 ------------TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
                       T LN+  N +L +  +  ++    L SL+  N+ +   G
Sbjct: 564 VSTPELARNPVLTSLNVRWNYDLGEAGVVDLAKSQSLTSLDARNTSMGMGG 614


>gi|254932490|ref|ZP_05265849.1| internalin E [Listeria monocytogenes HPB2262]
 gi|405748615|ref|YP_006672081.1| internalin E [Listeria monocytogenes ATCC 19117]
 gi|417316569|ref|ZP_12103213.1| internalin E [Listeria monocytogenes J1-220]
 gi|424822001|ref|ZP_18247014.1| Internalin E [Listeria monocytogenes str. Scott A]
 gi|293584046|gb|EFF96078.1| internalin E [Listeria monocytogenes HPB2262]
 gi|328476104|gb|EGF46813.1| internalin E [Listeria monocytogenes J1-220]
 gi|332310681|gb|EGJ23776.1| Internalin E [Listeria monocytogenes str. Scott A]
 gi|404217815|emb|CBY69179.1| internalin E (LPXTG motif) [Listeria monocytogenes ATCC 19117]
          Length = 499

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 38/216 (17%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +  LTNL  L+++ +++TD  ++ L  L K+T L L G P     L  +SAL  L     
Sbjct: 92  MQYLTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL----- 139

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
                            SLK+L+L + +ITD  +  L GLTNL+ LNLD   I D  +  
Sbjct: 140 ----------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISP 179

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L  L NL+ L L  TQV  S L  ++ L+ L  +N     +SD  +  LA LSSL  + L
Sbjct: 180 LAALSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYL 235

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
              QI+D  ++ L ++  L+ ++L    IT+    Y
Sbjct: 236 RENQISD--VSPLANIPNLSIIELTDQIITNQPVYY 269



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 51/212 (24%)

Query: 177 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 227
           G+T +E +    NL    + D  + +++ L NL  +    T++G SG     +  L+GL 
Sbjct: 85  GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 140

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           +L+ ++L +T I+D  +  LAGL++L+ LNLD  QITD  ++ L +L+ L  L L   ++
Sbjct: 141 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 196

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           +D                          +  I +LS LT+LN ++NC ++D     IS L
Sbjct: 197 SD--------------------------LTPIANLSKLTILN-AENCKVSD-----ISPL 224

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             L SL  +   +    +  + PL N+ +L++
Sbjct: 225 ASLSSL--TEVYLRENQISDVSPLANIPNLSI 254



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 27/141 (19%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ----- 107
           L GL  L+ L++ + +    +D+  L+GLTNL+ L +  +++TD S +A L  LQ     
Sbjct: 136 LAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSLG 192

Query: 108 --------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
                         KLT+LN E C V  + +  L++L SL  + L   Q+SD      + 
Sbjct: 193 YTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLAN 248

Query: 154 IGSLKVLNLGFNEITDECLVH 174
           I +L ++ L    IT++ + +
Sbjct: 249 IPNLSIIELTDQIITNQPVYY 269


>gi|83629923|gb|ABC26623.1| internalin E [Listeria monocytogenes]
          Length = 498

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 38/216 (17%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +  LTNL  L+++ +++TD  ++ L  L K+T L L G P     L  +SAL  L     
Sbjct: 91  MQYLTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL----- 138

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
                            SLK+L+L + +ITD  +  L GLTNL+ LNLD   I D  +  
Sbjct: 139 ----------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISP 178

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
           L  L NL+ L L  TQV  S L  ++ L+ L  +N     +SD  +  LA LSSL  + L
Sbjct: 179 LAALSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYL 234

Query: 259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
              QI+D  ++ L ++  L+ ++L    IT+    Y
Sbjct: 235 RENQISD--VSPLANIPNLSIIELTDQIITNQPVYY 268



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 51/212 (24%)

Query: 177 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 227
           G+T +E +    NL    + D  + +++ L NL  +    T++G SG     +  L+GL 
Sbjct: 84  GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 139

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           +L+ ++L +T I+D  +  LAGL++L+ LNLD  QITD  ++ L +L+ L  L L   ++
Sbjct: 140 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 195

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
           +D                          +  I +LS LT+LN ++NC ++D     IS L
Sbjct: 196 SD--------------------------LTPIANLSKLTILN-AENCKVSD-----ISPL 223

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             L SL  +   +    +  + PL N+ +L++
Sbjct: 224 ASLSSL--TEVYLRENQISDVSPLANIPNLSI 253



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 27/141 (19%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ----- 107
           L GL  L+ L++ + +    +D+  L+GLTNL+ L +  +++TD S +A L  LQ     
Sbjct: 135 LAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSLG 191

Query: 108 --------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 153
                         KLT+LN E C V  + +  L++L SL  + L   Q+SD      + 
Sbjct: 192 YTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLAN 247

Query: 154 IGSLKVLNLGFNEITDECLVH 174
           I +L ++ L    IT++ + +
Sbjct: 248 IPNLSIIELTDQIITNQPVYY 268


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.317    0.135    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,572,955,280
Number of Sequences: 23463169
Number of extensions: 217649090
Number of successful extensions: 763992
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5498
Number of HSP's successfully gapped in prelim test: 17851
Number of HSP's that attempted gapping in prelim test: 592520
Number of HSP's gapped (non-prelim): 96487
length of query: 406
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 261
effective length of database: 8,957,035,862
effective search space: 2337786359982
effective search space used: 2337786359982
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)