BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015457
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 19 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
NN IT + L NL +L+L T + L GL L+ LN + N +TD +KP
Sbjct: 116 NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKP 167
Query: 79 LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFY 135
L+ LT L+ L IS +KV+D + E T + ++ LG +L
Sbjct: 168 LANLTTLERLDISSNKVSDISV-------LAKLTNLESLIATNNQISDITPLGILTNLDE 220
Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
L+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 221 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN-- 274
Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
+ L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+
Sbjct: 275 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQR 330
Query: 256 L 256
L
Sbjct: 331 L 331
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 42/237 (17%)
Query: 27 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
+ A L NL L T + + ++ L L +LN + T SD+ LSGLT+L+
Sbjct: 100 ITPLANLTNLTGL-----TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 154
Query: 87 SLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
L ++VTD L L+ L +L L+++ ++SD
Sbjct: 155 QLNFG-NQVTD--------------------------LKPLANLTTLERLDISSNKVSD- 186
Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
+K+ +L+ L N+I+D + L LTNL+ L+L+ + D G L L NL
Sbjct: 187 -ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLT 241
Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L +L L+ Q+
Sbjct: 242 DLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 294
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 19 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
NN IT + L NL +L+L T + L GL L+ LN + N +TD +KP
Sbjct: 116 NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKP 167
Query: 79 LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFY 135
L+ LT L+ L IS +KV+D + E T + ++ LG +L
Sbjct: 168 LANLTTLERLDISSNKVSDISV-------LAKLTNLESLIATNNQISDITPLGILTNLDE 220
Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
L+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 221 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN-- 274
Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
+ L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+
Sbjct: 275 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQR 330
Query: 256 L 256
L
Sbjct: 331 L 331
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 42/237 (17%)
Query: 27 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
+ A L NL L T + + ++ L L +LN + T SD+ LSGLT+L+
Sbjct: 100 ITPLANLTNLTGL-----TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 154
Query: 87 SLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
L ++VTD L L+ L +L L+++ ++SD
Sbjct: 155 QLNFG-NQVTD--------------------------LKPLANLTTLERLDISSNKVSD- 186
Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
+K+ +L+ L N+I+D + L LTNL+ L+L+ + D G L L NL
Sbjct: 187 -ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLT 241
Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L +L L+ Q+
Sbjct: 242 DLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 294
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 28/241 (11%)
Query: 19 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
NN IT + L NL +L+L T + L GL L+ L + N +TD +KP
Sbjct: 121 NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKP 172
Query: 79 LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFY 135
L+ LT L+ L IS +KV+D + E T + ++ LG +L
Sbjct: 173 LANLTTLERLDISSNKVSDISV-------LAKLTNLESLIATNNQISDITPLGILTNLDE 225
Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
L+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 226 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN-- 279
Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
+ L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+
Sbjct: 280 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQR 335
Query: 256 L 256
L
Sbjct: 336 L 336
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 42/237 (17%)
Query: 27 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
+ A L NL L T + + ++ L L +LN + T SD+ LSGLT+L+
Sbjct: 105 ITPLANLTNLTGL-----TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 159
Query: 87 SLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
L ++VTD L L+ L +L L+++ ++SD
Sbjct: 160 QLSFG-NQVTD--------------------------LKPLANLTTLERLDISSNKVSD- 191
Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
+K+ +L+ L N+I+D + L LTNL+ L+L+ + D G L L NL
Sbjct: 192 -ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLT 246
Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L +L L+ Q+
Sbjct: 247 DLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 299
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 28/241 (11%)
Query: 19 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
NN IT + L NL +L+L T + L GL L+ L + N +TD +KP
Sbjct: 120 NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKP 171
Query: 79 LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFY 135
L+ LT L+ L IS +KV+D + E T + ++ LG +L
Sbjct: 172 LANLTTLERLDISSNKVSDISV-------LAKLTNLESLIATNNQISDITPLGILTNLDE 224
Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
L+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 225 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN-- 278
Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
+ L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+
Sbjct: 279 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQR 334
Query: 256 L 256
L
Sbjct: 335 L 335
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 42/237 (17%)
Query: 27 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
+ A L NL L T + + ++ L L +LN + T SD+ LSGLT+L+
Sbjct: 104 ITPLANLTNLTGL-----TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 158
Query: 87 SLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
L ++VTD L L+ L +L L+++ ++SD
Sbjct: 159 QLSFG-NQVTD--------------------------LKPLANLTTLERLDISSNKVSD- 190
Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
+K+ +L+ L N+I+D + L LTNL+ L+L+ + D G L L NL
Sbjct: 191 -ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLT 245
Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L +L L+ Q+
Sbjct: 246 DLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 298
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 114/237 (48%), Gaps = 41/237 (17%)
Query: 27 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
+ A L NL L T + + ++ L L +LN + T SD+ LSGLT+L+
Sbjct: 100 ITPLANLTNLTGL-----TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 154
Query: 87 SLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
L S ++VTD L L+ L +L L+++ ++SD
Sbjct: 155 QLNFSSNQVTD--------------------------LKPLANLTTLERLDISSNKVSD- 187
Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
+K+ +L+ L N+I+D + L LTNL+ L+L+ + D G L L NL
Sbjct: 188 -ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLT 242
Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L +L L+ Q+
Sbjct: 243 DLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 295
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 26/174 (14%)
Query: 29 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 88
A L NL LDL L L GL KL L + N I S++ PL+GLT L +L
Sbjct: 234 TLASLTNLTDLDL--ANNQISNLAPLSGLTKLTELKLG-ANQI--SNISPLAGLTALTNL 288
Query: 89 QISCSKVTD----SGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
+++ +++ D S + + PV+ SL+ L LF+ N ++S
Sbjct: 289 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS-----SLTKLQRLFFYN---NKVS 340
Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
D + + ++ L+ G N+I+D L L LT + L G+ D+ N
Sbjct: 341 D--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQL-----GLNDQAWTN 385
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 114/237 (48%), Gaps = 41/237 (17%)
Query: 27 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
+ A L NL L T + + ++ L L +LN + T SD+ LSGLT+L+
Sbjct: 100 ITPLANLTNLTGL-----TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 154
Query: 87 SLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
L S ++VTD L L+ L +L L+++ ++SD
Sbjct: 155 QLSFSSNQVTD--------------------------LKPLANLTTLERLDISSNKVSD- 187
Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
+K+ +L+ L N+I+D + L LTNL+ L+L+ + D G L L NL
Sbjct: 188 -ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLT 242
Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L +L L+ Q+
Sbjct: 243 DLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 295
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 26/174 (14%)
Query: 29 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 88
A L NL LDL L L GL KL L + N I S++ PL+GLT L +L
Sbjct: 234 TLASLTNLTDLDL--ANNQISNLAPLSGLTKLTELKLG-ANQI--SNISPLAGLTALTNL 288
Query: 89 QISCSKVTD----SGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
+++ +++ D S + + PV+ SL+ L LF+ N ++S
Sbjct: 289 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS-----SLTKLQRLFFSN---NKVS 340
Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
D + + ++ L+ G N+I+D L L LT + L G+ D+ N
Sbjct: 341 D--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQL-----GLNDQAWTN 385
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 114/237 (48%), Gaps = 41/237 (17%)
Query: 27 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
+ A L NL L T + + ++ L L +LN + T SD+ LSGLT+L+
Sbjct: 100 ITPLANLTNLTGL-----TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 154
Query: 87 SLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
L S ++VTD L L+ L +L L+++ ++SD
Sbjct: 155 QLSFSSNQVTD--------------------------LKPLANLTTLERLDISSNKVSD- 187
Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
+K+ +L+ L N+I+D + L LTNL+ L+L+ + D G L L NL
Sbjct: 188 -ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLT 242
Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L +L L+ Q+
Sbjct: 243 DLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 295
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 26/174 (14%)
Query: 29 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 88
A L NL LDL L L GL KL L + N I S++ PL+GLT L +L
Sbjct: 234 TLASLTNLTDLDL--ANNQISNLAPLSGLTKLTELKLG-ANQI--SNISPLAGLTALTNL 288
Query: 89 QISCSKVTD----SGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLS 144
+++ +++ D S + + PV+ SL+ L LF+ N ++S
Sbjct: 289 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS-----SLTKLQRLFFYN---NKVS 340
Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
D + + ++ L+ G N+I+D L L LT + L G+ D+ N
Sbjct: 341 D--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQL-----GLNDQAWTN 385
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 35/231 (15%)
Query: 54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYXXXXXXXXXX 112
L L K SLN+ + + SD+ PLS T L L ++ SKV D + IA
Sbjct: 128 LANLTKXYSLNLGANHNL--SDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSLN 185
Query: 113 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV------------ 159
+ ++ L++L SL Y Q++D +++ SLK+
Sbjct: 186 YNQIEDISP-----LASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSPLA 240
Query: 160 -------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 212
L +G N+I+D V K LT L+ LN+ S I D ++N L L L L++
Sbjct: 241 NLSQLTWLEIGTNQISDINAV--KDLTKLKXLNVGSNQISDISVLN--NLSQLNSLFLNN 296
Query: 213 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
Q+G+ + GLTNL ++ LS I+D +R LA LS S + A Q+
Sbjct: 297 NQLGNEDXEVIGGLTNLTTLFLSQNHITD--IRPLASLSKXDSADF-ANQV 344
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 105/261 (40%), Gaps = 54/261 (20%)
Query: 42 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---- 97
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 54 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITDISAL 106
Query: 98 SGIAYXXXXXXXXXXXXEGCPVTA---------------ACLDSLSALGSLFYLNLNRCQ 142
+ + P+ + L LS L YL + +
Sbjct: 107 QNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESK 166
Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN----------------- 185
+ D + + L L+L +N+I D + L LT+L
Sbjct: 167 VKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANXTR 222
Query: 186 LDSCGIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
L+S IG+ + +L+ L NL LE+ Q+ S + + LT L+ +N+ ISD
Sbjct: 223 LNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKXLNVGSNQISDI 280
Query: 243 SLRKLAGLSSLKSLNLDARQI 263
S+ L LS L SL L+ Q+
Sbjct: 281 SV--LNNLSQLNSLFLNNNQL 299
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 16 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 75
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 335
Query: 76 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 125
M+ P +GL NLK L +S S + + T
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 376
Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 180
SL A L LNL + ++S + FS +G L+VL+LG NEI E +GL N
Sbjct: 377 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435
Query: 181 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 218
L+ L L + D L NL L+LS+ + +
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495
Query: 219 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 260
L GL LE ++L ++ G + L GLS L LNL++
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 16 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 75
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 283 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 340
Query: 76 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 125
M+ P +GL NLK L +S S + + T
Sbjct: 341 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 381
Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 180
SL A L LNL + ++S + FS +G L+VL+LG NEI E +GL N
Sbjct: 382 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 440
Query: 181 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 218
L+ L L + D L NL L+LS+ + +
Sbjct: 441 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 500
Query: 219 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 260
L GL LE ++L ++ G + L GLS L LNL++
Sbjct: 501 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 550
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 16 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 75
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 288 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 345
Query: 76 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 125
M+ P +GL NLK L +S S + + T
Sbjct: 346 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 386
Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 180
SL A L LNL + ++S + FS +G L+VL+LG NEI E +GL N
Sbjct: 387 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 445
Query: 181 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 218
L+ L L + D L NL L+LS+ + +
Sbjct: 446 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 505
Query: 219 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 260
L GL LE ++L ++ G + L GLS L LNL++
Sbjct: 506 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 555
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 127 LVHL---PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 179
Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
+ LS ISD LR LAGL +L L L +++
Sbjct: 180 LYLSKNHISD--LRALAGLKNLDVLELFSQE 208
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 74 SDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSL 133
+D+KPL+ L NL L + +K+ D G + ++ L L L
Sbjct: 78 TDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI----SDINGLVHLPQL 133
Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
L L +++D S++ L L+L N+I+D +V L GLT L++L L I D
Sbjct: 134 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD 189
Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
L L GL NL LEL + + + H S L
Sbjct: 190 --LRALAGLKNLDVLELFSQECLNKPINHQSNL 220
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 19/194 (9%)
Query: 73 DSDMKPLSG---LTNLKSLQISCSKVTD-SGIAYXXXXXXXXXXXXEGCPVTAACLDSLS 128
+SD+K + G L NL SL +S +++TD S I Y + + L +L
Sbjct: 53 NSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKP--LANLK 110
Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
LG LF L+ N+ + + N G ++I LVHL LESL L +
Sbjct: 111 NLGWLF-LDENKVKDLSSLKDLKKLKSLSLEHN-GISDIN--GLVHLP---QLESLYLGN 163
Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
I D + L+ L L L L D Q+ S + L+GLT L+++ LS ISD LR LA
Sbjct: 164 NKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISD--LRALA 217
Query: 249 GLSSLKSLNLDARQ 262
GL +L L L +++
Sbjct: 218 GLKNLDVLELFSQE 231
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 74 SDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSL 133
+D+KPL+ L NL L + +KV D G + ++ L L L
Sbjct: 101 TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI----SDINGLVHLPQL 156
Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
L L +++D S++ L L+L N+I+D +V L GLT L++L L I D
Sbjct: 157 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD 212
Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
L L GL NL LEL + + + H S L
Sbjct: 213 --LRALAGLKNLDVLELFSQECLNKPINHQSNL 243
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 22/72 (30%)
Query: 48 HGGLVNLKGLMKLESLNIKWC--NCITD--------------------SDMKPLSGLTNL 85
H G+ ++ GL+ L L + N ITD SD+ PL+GLT L
Sbjct: 141 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 200
Query: 86 KSLQISCSKVTD 97
++L +S + ++D
Sbjct: 201 QNLYLSKNHISD 212
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 130 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 182
Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
+ LS ISD LR LAGL +L L L +++
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELFSQE 211
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXX 113
++G+ L ++ + N +D+KPL+ L NL L + +KV D
Sbjct: 61 VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120
Query: 114 XEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
G + ++ L L L L L +++D S++ L L+L N+I+D +V
Sbjct: 121 HNGI----SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IV 172
Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
L GLT L++L L I D L L GL NL LEL + + + H S L
Sbjct: 173 PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNL 223
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 151 FSKIGSLKVLNLG----FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
F+++ SL+ L+LG I++ +GL NL LNL C + D + NLT L L+
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAAF---EGLVNLRYLNLGMCNLKD--IPNLTALVRLE 181
Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
LELS ++ GLT+L + L ++ L SL+ LNL
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 128 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 180
Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
+ LS ISD LR LAGL +L L L +++
Sbjct: 181 LYLSKNHISD--LRALAGLKNLDVLELFSQE 209
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXX 113
++G+ L ++ + N +D+KPL+ L NL L + +KV D
Sbjct: 59 VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 118
Query: 114 XEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
G + ++ L L L L L +++D S++ L L+L N+I+D +V
Sbjct: 119 HNGI----SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IV 170
Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
L GLT L++L L I D L L GL NL LEL + + + H S L
Sbjct: 171 PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNL 221
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 22/72 (30%)
Query: 48 HGGLVNLKGLMKLESLNIKWC--NCITD--------------------SDMKPLSGLTNL 85
H G+ ++ GL+ L L + N ITD SD+ PL+GLT L
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 178
Query: 86 KSLQISCSKVTD 97
++L +S + ++D
Sbjct: 179 QNLYLSKNHISD 190
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 130 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 182
Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
+ LS ISD LR LAGL +L L L +++
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELFSQE 211
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXX 113
++G+ L ++ + N +D+KPL+ L NL L + +KV D
Sbjct: 61 VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120
Query: 114 XEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
G + ++ L L L L L +++D S++ L L+L N+I+D +V
Sbjct: 121 HNGI----SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IV 172
Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
L GLT L++L L I D L L GL NL LEL + + + H S L
Sbjct: 173 PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNL 223
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 151 FSKIGSLKVLNLG----FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
F+++ SL+ L+LG I++ +GL NL LNL C + D + NLT L L+
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAAF---EGLVNLRYLNLGMCNLKD--IPNLTALVRLE 181
Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
LELS ++ GLT+L + L ++ L SL+ LNL
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 43/255 (16%)
Query: 18 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM- 76
R+N + + F GL NL KLD+ +V L M + N+K + D+D+
Sbjct: 88 RSNRLKLIPLGVFTGLSNLTKLDISE-----NKIVILLDYMFQDLYNLKSLE-VGDNDLV 141
Query: 77 ----KPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGS 132
+ SGL +L+ L + E C +T+ ++LS L
Sbjct: 142 YISHRAFSGLNSLEQLTL------------------------EKCNLTSIPTEALSHLHG 177
Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGLTNLESLNLDS 188
L L L ++ F ++ LKVL + + +T CL L NL SL++
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL----NLTSLSITH 233
Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
C + + + L L+ L LS + + L L L+ I L ++
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293
Query: 249 GLSSLKSLNLDARQI 263
GL+ L+ LN+ Q+
Sbjct: 294 GLNYLRVLNVSGNQL 308
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
D ++ L L LN +S F+ + +L+ L L N + L GL+NL L
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL---SFTGISD 241
++ I L NLK LE+ D + R SGL +LE + L + T I
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169
Query: 242 GSLRKLAGLS--SLKSLNLDA 260
+L L GL L+ LN++A
Sbjct: 170 EALSHLHGLIVLRLRHLNINA 190
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 125 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 177
Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
+ LS ISD LR LAGL +L L L +++
Sbjct: 178 LYLSKNHISD--LRALAGLKNLDVLELFSQE 206
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 74 SDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSL 133
+D+KPL+ L NL L + +K+ D G + ++ L L L
Sbjct: 76 TDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI----SDINGLVHLPQL 131
Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
L L +++D S++ L L+L N+I+D +V L GLT L++L L I D
Sbjct: 132 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD 187
Query: 194 EGLVNLTGLCNLKCLEL 210
L L GL NL LEL
Sbjct: 188 --LRALAGLKNLDVLEL 202
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 148 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 200
Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
+ LS ISD LR LAGL +L L L +++
Sbjct: 201 LYLSKNHISD--LRALAGLKNLDVLELFSQE 229
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXX 113
++G+ L ++ + N +D+KPL+ L NL L + +K+ D
Sbjct: 79 VQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 138
Query: 114 XEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
G + ++ L L L L L +++D S++ L L+L N+I+D +V
Sbjct: 139 HNGI----SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IV 190
Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
L GLT L++L L I D L L GL NL LEL
Sbjct: 191 PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 148 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 200
Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
+ LS ISD LR LAGL +L L L +++
Sbjct: 201 LYLSKNHISD--LRALAGLKNLDVLELFSQE 229
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXX 113
++G+ L ++ + N +D+KPL+ L NL L + +K+ D
Sbjct: 79 VQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 138
Query: 114 XEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
G + ++ L L L L L +++D S++ L L+L N+I+D +V
Sbjct: 139 HNGI----SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IV 190
Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
L GLT L++L L I D L L GL NL LEL
Sbjct: 191 PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 225
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 148 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 200
Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
+ LS ISD LR LAGL +L L L +++
Sbjct: 201 LYLSKNHISD--LRALAGLKNLDVLELFSQE 229
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXX 113
++G+ L ++ + N +D+KPL+ L NL L + +K+ D
Sbjct: 79 VQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 138
Query: 114 XEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
G + ++ L L L L L +++D S++ L L+L N+I+D +V
Sbjct: 139 HNGI----SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IV 190
Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
L GLT L++L L I D L L GL NL LEL
Sbjct: 191 PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 225
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 151 FSKIGSLKVLNLG----FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
F+++ SL L+LG I++ +GL NL+ LNL C I D + NLT L L+
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAF---EGLFNLKYLNLGMCNIKD--MPNLTPLVGLE 221
Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
LE+S GL++L+ + + + +S GL+SL LNL
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
Query: 16 FRRNNAITAQGMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 72
+ RNN I + AF + +L++LDL ++ I G +GL L+ LN+ CN
Sbjct: 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA--FEGLFNLKYLNLGMCNI-- 208
Query: 73 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGS 132
DM L+ L L+ L++S + + V+ ++ L S
Sbjct: 209 -KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267
Query: 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
L LNL LS + F+ + L L+L N +C
Sbjct: 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 104/286 (36%), Gaps = 67/286 (23%)
Query: 20 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC----------N 69
N I ++F GL NL L L+R V+L ++ + +W N
Sbjct: 282 NNIQRLSPRSFYGLSNLRYLSLKRAFTKQS--VSLASHPNIDDFSFQWLKYLEYLNMDDN 339
Query: 70 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSA 129
I + +GL +LK L +S + + + T SL A
Sbjct: 340 NIPSTKSNTFTGLVSLKYLSLSKTFTSLQTL-------------------TNETFVSL-A 379
Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNL------- 181
L LNL + +S FS +G L++L+LG NEI + +GL N+
Sbjct: 380 HSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSY 439
Query: 182 -ESLNLDSCGIG------------------DEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
+ L L + D L NL L+LS+ + +
Sbjct: 440 NKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDL 499
Query: 223 LSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 260
L GL NLE ++ ++ G + L GLS L LNL++
Sbjct: 500 LEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLES 545
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL--GFNEITDECLVH-------LK 176
S S L SL YL+L + F + +L+ L+L F + + H +
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQ 326
Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213
L LE LN+D I TGL +LK L LS T
Sbjct: 327 WLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKT 363
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIG 192
LNL QL F++ L +L+ GFN I+ + L L+ LNL I
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
D+ V T L L + S ++ S+ ++ L L+ LS G+S L
Sbjct: 90 DQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLD---LSHNGLSSTKL 138
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
F + LKVLNL +N+I GL NL+ LNL +G+ N GL + ++L
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 211 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
+ + L L++++L D +L + + S+ + L ++
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDL-----RDNALTTIHFIPSIPDIFLSGNKL 393
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR--KLA 248
I E NL NL+ L+L +++ GL +L + L F G+SD L+
Sbjct: 64 IDKEAFRNLP---NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120
Query: 249 GLSSLKSLNLDARQI 263
L +L L+L QI
Sbjct: 121 NLKALTRLDLSKNQI 135
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Query: 151 FSKIGSLKVLNLGFN---EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
F+ + L+ L+L N D H GL L +L+LD CG+ + G GL L+
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
L L D + + L NL + L IS R GL SL L L ++
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Query: 151 FSKIGSLKVLNLGFN---EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
F+ + L+ L+L N D H GL L +L+LD CG+ + G GL L+
Sbjct: 75 FTGLALLEQLDLSDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQY 132
Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
L L D + + L NL + L IS R GL SL L L ++
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 188
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 74 SDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSL 133
+D+KPL+ L NL L + +KV D G + ++ L L L
Sbjct: 76 TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI----SDINGLVHLPQL 131
Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
L L +++D S++ L L+L N+I+D +V L LT L++L L I D
Sbjct: 132 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLACLTKLQNLYLSKNHISD 187
Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
L L GL NL LEL + + + H S L
Sbjct: 188 --LRALCGLKNLDVLELFSQEALNKPINHQSNL 218
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
Length = 197
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 15/132 (11%)
Query: 132 SLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNL---GFNEITDECLVHLKGLTNLESLNLD 187
SL Y+ L ++D G E I L + N+ +N I+ GL+NLE L +
Sbjct: 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPIS--------GLSNLERLRIX 96
Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRK 246
+ + + NL+GL +L L++S + S L ++ L + SI+LS+ G I+D +
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IXP 154
Query: 247 LAGLSSLKSLNL 258
L L LKSLN+
Sbjct: 155 LKTLPELKSLNI 166
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 51 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 97
L + L K+ S+++ + IT D+ PL L LKSL I V D
Sbjct: 129 LTKINTLPKVNSIDLSYNGAIT--DIXPLKTLPELKSLNIQFDGVHD 173
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 35 NLVKLDLERCTRIHGGLVNLKGLMKLE-SLNIK--WCNCITDSDMKPLSGLTNLKSLQIS 91
N+ + T I +N+ L +E + NIK N I ++ P+SGL+NL+ L+I
Sbjct: 37 NITEAQXNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIX 96
Query: 92 CSKVTDSGIA 101
VT I
Sbjct: 97 GKDVTSDKIP 106
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 38/86 (44%)
Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
T+LE L L I GL +L L LS +GS R L LE ++LS+
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 238 GISDGSLRKLAGLSSLKSLNLDARQI 263
I + GL +LK L LD Q+
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQL 383
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
FS L+ L L NEI GLT+L LNL +G L L+ L+L
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 211 SDTQVGSSGLRHLSGLTNLESINL---SFTGISDGSLRKLAGLSSL 253
S + + G + GL NL+ + L + DG +L L +
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 122/282 (43%), Gaps = 63/282 (22%)
Query: 136 LNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDECL-VHLKGLTN----LESLNL 186
+ L+ C L++ C+ S +L L+L NE+ D + + L+GL N ++ L+L
Sbjct: 29 VRLDDCGLTEVRCKDISSAVQANPALTELSLRTNELGDGGVGLVLQGLQNPTCKIQKLSL 88
Query: 187 DSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLRHL-SGLTN----LESINLSFT 237
+CG+ + G L G L L+ L L+D +G +GL+ L GL + LE + L +
Sbjct: 89 QNCGLTEAGCGILPGMLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYC 148
Query: 238 GISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXXXXXXXDLF--GARITDSGAAYL 295
++ S LA + +K+ D +++ DL G RI G
Sbjct: 149 NLTATSCEPLASVLRVKA---DFKELVLSNN------------DLHEPGVRILCQGLK-- 191
Query: 296 RNFKNLRSLEICGGGLTDAGVKHIKDXXXXXXXXXXXXXXXTDKTLELISGLTGLVSLNV 355
+ L SL++ G+T A K + D +++ L L++
Sbjct: 192 DSACQLESLKLENCGITAANCKDLCD---------------------VVASKASLQELDL 230
Query: 356 SNSRITSAGLRH-----LKPLKNLRSLTLESCKVTANDIKRL 392
S++++ +AG+ L P LR+L L C +TA K L
Sbjct: 231 SSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDL 272
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 30/143 (20%)
Query: 58 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGC 117
+KLE+ I NC D+ ++ +L+ L +S +K+ ++GIA
Sbjct: 200 LKLENCGITAANCKDLCDV--VASKASLQELDLSSNKLGNAGIA---------------- 241
Query: 118 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDE--- 170
A C L L L L C ++ +GC+ ++ SLK L+L NE+ DE
Sbjct: 242 ---ALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNELKDEGAR 298
Query: 171 --CLVHLKGLTNLESLNLDSCGI 191
C L+ LESL + +C +
Sbjct: 299 LLCESLLEPGCQLESLWIKTCSL 321
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 44/239 (18%)
Query: 54 LKGL--MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-----SGIAYXXXX 106
LKGL M +ESLN++ + +D T L+ L ++ + + G+
Sbjct: 245 LKGLCEMSVESLNLQE-HRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKL 303
Query: 107 XXXXXXXXEGCPVTAACLDSLSALGSLFYL--NLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
+ C ++AA SL+ L Y+ N+ + L GC K+G+L+ L+L
Sbjct: 304 VLSVNHFDQLCQISAANFPSLTHL----YIRGNVKKLHLGV-GC--LEKLGNLQTLDLSH 356
Query: 165 NEI--TDECLVHLKGLTNLESLNL---DSCGIGDEGL-----------------VN---- 198
N+I +D C + LK L++L++LNL + G+ + +N
Sbjct: 357 NDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQS 416
Query: 199 -LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
L L+ L L+ + +S L+GL L +NL DG++ K L ++ SL
Sbjct: 417 PFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSL 475
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 28/156 (17%)
Query: 28 KAFAGLINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 85
+AF L LDL TR+H + L L+ LN+ +C + S+ L+GL L
Sbjct: 391 QAFKECPQLELLDL-AFTRLHINAPQSPFQNLHFLQVLNLTYC-FLDTSNQHLLAGLPVL 448
Query: 86 KSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 145
+ L + + D I + L +GSL L L+ C L
Sbjct: 449 RHLNLKGNHFQDGTITKT---------------------NLLQTVGSLEVLILSSCGLLS 487
Query: 146 DGCEKFSKIGSLKVLNLGFNEIT---DECLVHLKGL 178
+ F +G + ++L N +T + L HLKG+
Sbjct: 488 IDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI 523
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 10/173 (5%)
Query: 54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXX 113
++G+ L ++ + N +D+KPL+ L NL L + +KV D
Sbjct: 59 VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 118
Query: 114 XEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
G + ++ L L L L L +++D S++ L L+L N+I +V
Sbjct: 119 HNGI----SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--RRIV 170
Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 226
L LT L++L L I D L L GL NL LEL + + + H S L
Sbjct: 171 PLARLTKLQNLYLSKNHISD--LRALRGLKNLDVLELFSQEALNKPINHQSNL 221
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 163 GFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGL 220
G + +TD L G+T L + G G + + L NL LEL D Q+ + L
Sbjct: 27 GKSNVTDTVTQADLDGITTLSAF-----GTGVTTIEGVQYLNNLIGLELKDNQITDLAPL 81
Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
++L+ +T LE +G ++ +AGL S+K+L+L + QI
Sbjct: 82 KNLTKITELE-----LSGNPLKNVSAIAGLQSIKTLDLTSTQI 119
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 25 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 84
+ + A AGL ++ LDL T+I + L GL L+ L + N IT+ + PL+GLTN
Sbjct: 98 KNVSAIAGLQSIKTLDL-TSTQITD-VTPLAGLSNLQVLYLD-LNQITN--ISPLAGLTN 152
Query: 85 LKSLQISCSKVTD 97
L+ L I ++V+D
Sbjct: 153 LQYLSIGNAQVSD 165
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 36/166 (21%)
Query: 30 FAGLINLVKL-DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 88
A L NL K+ +LE + + GL +++L++ +D+ PL+GL+NL+ L
Sbjct: 78 LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI---TDVTPLAGLSNLQVL 134
Query: 89 QISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DG 147
+ +++T+ + L+ L +L YL++ Q+SD
Sbjct: 135 YLDLNQITN--------------------------ISPLAGLTNLQYLSIGNAQVSDLTP 168
Query: 148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
SK+ +LK + N+I+D + L L NL ++L + I D
Sbjct: 169 LANLSKLTTLKADD---NKISD--ISPLASLPNLIEVHLKNNQISD 209
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 131 GSLFYLN-LNRCQLSDDGCEK-----FSKIGSLKVLNLG----FNEITDECLVHLKGLTN 180
G+ YL+ L L ++ E F++I SL+ L+LG + I++ +GL+N
Sbjct: 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF---EGLSN 186
Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
L LNL C + + + NLT L L L+LS + + GL +L+ + + + I
Sbjct: 187 LRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
Query: 241 DGSLRKLAGLSSLKSLNL 258
L SL +NL
Sbjct: 245 VIERNAFDNLQSLVEINL 262
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 25/126 (19%)
Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQ 214
++LNL N+I + K L +LE L L I + GL NL LEL D T
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126
Query: 215 VGSSGLRHLSGLTNL-------ESI-NLSFTGISD------GSLRKLA--------GLSS 252
+ + +LS L L ESI + +F I G L++L+ GLS+
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
Query: 253 LKSLNL 258
L+ LNL
Sbjct: 187 LRYLNL 192
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 16 FRRNNAITAQGMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 72
+ RNN I + AF + +L +LDL +R + I G +GL L LN+ CN
Sbjct: 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA--FEGLSNLRYLNLAMCNLRE 199
Query: 73 DSDMKPLSGLTNL 85
++ PL L L
Sbjct: 200 IPNLTPLIKLDEL 212
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 3/134 (2%)
Query: 80 SGLTN-LKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNL 138
SGLT +KSL +S +K+T G + + D+ +LGSL +L+L
Sbjct: 22 SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDE-GL 196
+ LS F + SLK LNL N + L LTNL++L + + E
Sbjct: 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141
Query: 197 VNLTGLCNLKCLEL 210
++ GL +L LE+
Sbjct: 142 IDFAGLTSLNELEI 155
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 33/164 (20%)
Query: 130 LGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
L SL +L+L+R LS GC S G SLK L+L FN + + GL LE L+
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQ 404
Query: 188 SCGIGDEGLVNLT-GLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESI------------ 232
+ ++ L NL L++S T V +G+ +GL++LE +
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQENFL 462
Query: 233 --------NLSFTGISDGSLRKLA-----GLSSLKSLNLDARQI 263
NL+F +S L +L+ LSSL+ LN+ + Q+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 53 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 112
N GL +LE L+ + N S+ L NL L IS + +
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 113 XXEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
G L D + L +L +L+L++CQL F+ + SL+VLN+ N++
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 126 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 235
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 3/134 (2%)
Query: 80 SGLTN-LKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNL 138
SGLT +KSL +S +K+T G + + D+ +LGSL +L+L
Sbjct: 48 SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 107
Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDE-GL 196
+ LS F + SLK LNL N + L LTNL++L + + E
Sbjct: 108 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 167
Query: 197 VNLTGLCNLKCLEL 210
++ GL +L LE+
Sbjct: 168 IDFAGLTSLNELEI 181
>pdb|3DZE|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Cadmium
pdb|3E3Z|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Phenylarsine Oxide
pdb|3E4G|A Chain A, Crystal Structure Of Bovine Coupling Factor B, G28e Mutant
Length = 176
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 20/102 (19%)
Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQ 262
++ ++ +D+ + S G H+ GL +E I L I DG L +L+ L +L+ L+
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 263 IXXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSL 304
I +TD G L +F+NL+ L
Sbjct: 122 ISC-------------------GNVTDKGIIALHHFRNLKYL 144
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 50 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-----ISCSKVTDSGI 100
G +++GL +E + + C+ I D ++ LS L NL+ ISC VTD GI
Sbjct: 77 GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 15/77 (19%)
Query: 165 NEITDECLVHLKGLTNLE----SLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
+ I D CL L L NL+ + + SCG + D+G++ L NLK L LSD
Sbjct: 96 HYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD------- 148
Query: 220 LRHLSGLTNLESINLSF 236
L G+ E I +F
Sbjct: 149 ---LPGVKEKEKIVQAF 162
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%)
Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
+GL +L +L+LD CG+ + G GL L+ L L D + + L NL + L
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFL 159
Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQI 263
I GL SL L L +
Sbjct: 160 HGNRIPSVPEHAFRGLHSLDRLLLHQNHV 188
>pdb|3E2J|A Chain A, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|B Chain B, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|C Chain C, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|D Chain D, Crystal Structure Of Bovine Coupling Factor B
Length = 176
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 20/102 (19%)
Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQ 262
++ ++ +D+ + S G H+ GL +E I L I DG L +L+ L +L+ L+
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 263 IXXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSL 304
I +TD G L +F+NL+ L
Sbjct: 122 ISC-------------------GNVTDKGIIALHHFRNLKYL 144
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 50 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-----ISCSKVTDSGI 100
G +++GL +E + + C+ I D ++ LS L NL+ ISC VTD GI
Sbjct: 77 GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 15/77 (19%)
Query: 165 NEITDECLVHLKGLTNLE----SLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
+ I D CL L L NL+ + + SCG + D+G++ L NLK L LSD
Sbjct: 96 HYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD------- 148
Query: 220 LRHLSGLTNLESINLSF 236
L G+ E I +F
Sbjct: 149 ---LPGVKEKEKIVQAF 162
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 32/169 (18%)
Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI--TDECLVH 174
C + AA SL L Y+ N +L D G K+ +L+ L+L ++I +D C +
Sbjct: 316 CQINAASFPSLRDL----YIKGNMRKL-DLGTRCLEKLENLQKLDLSHSDIEASDCCNLQ 370
Query: 175 LKGLTNLESLNL---DSCGIGDEGL----------VNLTGLCN------------LKCLE 209
LK L +L+ LNL + G+ D+ V T L L+ L
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
LS + +S L+GL +L +NL DGS+ K L + SL +
Sbjct: 431 LSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEI 479
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 55/134 (41%)
Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
+ S L +L +L+L RCQ++ + F L + L N + L G L+ L
Sbjct: 51 TFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLF 110
Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
L GI + + + L NL+ L L + S L NL+ ++ I S +
Sbjct: 111 LTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRK 170
Query: 246 KLAGLSSLKSLNLD 259
L +L+L+
Sbjct: 171 DTNSLEQATNLSLN 184
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 163 GFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGL 220
G + +TD L G+ L + N I EG+ L NL LEL D Q+ + L
Sbjct: 33 GKSNVTDAVTQADLDGIATLSAFNTGVTTI--EGI---QYLNNLIGLELKDNQITDLTPL 87
Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
++L+ +T LE +G ++ +AGL S+K+L+L + QI
Sbjct: 88 KNLTKITELE-----LSGNPLKNVSAIAGLQSIKTLDLTSTQI 125
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 25 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 84
+ + A AGL ++ LDL T+I + L GL L+ L + N IT+ + PL+GLTN
Sbjct: 104 KNVSAIAGLQSIKTLDL-TSTQITD-VTPLAGLSNLQVLYLDL-NQITN--ISPLAGLTN 158
Query: 85 LKSLQISCSKVTD 97
L+ L I ++V D
Sbjct: 159 LQYLSIGNNQVND 171
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 34/150 (22%)
Query: 54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXX 113
+ GL +++L++ +D+ PL+GL+NL+ L + +++T+
Sbjct: 109 IAGLQSIKTLDLTSTQI---TDVTPLAGLSNLQVLYLDLNQITN---------------- 149
Query: 114 XEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
+ L+ L +L YL++ Q++D + + L L N+I+D +
Sbjct: 150 ----------ISPLAGLTNLQYLSIGNNQVND--LTPLANLSKLTTLRADDNKISD--IS 195
Query: 174 HLKGLTNLESLNLDSCGIGD-EGLVNLTGL 202
L L NL ++L I D L NL+ L
Sbjct: 196 PLASLPNLIEVHLKDNQISDVSPLANLSNL 225
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 53 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS--KVTDSGIAYXXXXXXXX 110
N GL +LE L+ + N S+ L NL L IS + +V +GI
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLE 448
Query: 111 XXXXEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
G L D + L +L +L+L++CQL F+ + SL+VLN+ N
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
S S L +L+L+RC++ + + + L L L N I GLT+LE+L
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLTNLESINLSFTGISDGSL 244
+ + L LK L ++ + S L + S LTNL ++LS+ I ++
Sbjct: 106 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 165
Query: 245 RKLAGLSSLKSLNL 258
L L +NL
Sbjct: 166 NDLQFLRENPQVNL 179
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
AL SL YL+L+R LS GC +S +G SL+ L+L FN + GL L+ L+
Sbjct: 343 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDF 401
Query: 187 DSCGIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
+ ++L L L + ++T++ G+ GLT+L ++ ++ D
Sbjct: 402 QHSTLKRVTEFSAFLSLEKLLYLD-ISYTNTKIDFDGI--FLGLTSLNTLKMAGNSFKDN 458
Query: 243 SLRK-LAGLSSLKSLNLDARQI 263
+L A ++L L+L Q+
Sbjct: 459 TLSNVFANTTNLTFLDLSKCQL 480
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
S S L +L+L+RC++ + + + L L L N I GLT+LE+L
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLTNLESINLSFTGISDGSL 244
+ + L LK L ++ + S L + S LTNL ++LS+ I ++
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170
Query: 245 RKLAGLSSLKSLNL 258
L L +NL
Sbjct: 171 NDLQFLRENPQVNL 184
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
AL SL YL+L+R LS GC +S +G SL+ L+L FN + GL L+ L+
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDF 406
Query: 187 DSCGIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
+ ++L L L + ++T++ G+ GLT+L ++ ++ D
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLD-ISYTNTKIDFDGI--FLGLTSLNTLKMAGNSFKDN 463
Query: 243 SLRK-LAGLSSLKSLNLDARQI 263
+L A ++L L+L Q+
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQL 485
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 14/161 (8%)
Query: 32 GLINLVKLDLERCTRIHGGLV----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 87
G I+L LDL G++ N GL +LE L+ + N S+ L NL
Sbjct: 395 GTISLKYLDLS-----FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449
Query: 88 LQISCS--KVTDSGIAYXXXXXXXXXXXXEGCPVTAACL-DSLSALGSLFYLNLNRCQLS 144
L IS + +V +GI G L D + L +L +L+L++CQL
Sbjct: 450 LDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507
Query: 145 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
F+ + SL+VLN+ N K L +L+ L+
Sbjct: 508 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 126 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 71 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128
Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 235
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 53 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 112
N GL +LE L+ + N S+ L NL L IS + +
Sbjct: 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155
Query: 113 XXEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167
G L D + L +L +L+L++CQL F+ + SL+VLN+ N
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 116/294 (39%), Gaps = 69/294 (23%)
Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVHL--KGLTN 180
L L + L+ C L+++ C+ SL L L NE+ D VHL +GL +
Sbjct: 20 LPLLQQYEVVRLDDCGLTEEHCKDIGSALRANPSLTELCLRTNELGDA-GVHLVLQGLQS 78
Query: 181 ----LESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHL-SGL----T 227
++ L+L +C + + G L L L+ L LSD +G +GLR L GL
Sbjct: 79 PTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQC 138
Query: 228 NLESINLSFTGISDGSLRKLAGL----SSLKSLNLDARQIXXXXXXXXXXXXXXXXXDLF 283
+LE + L + ++ S LA + +LK L + I
Sbjct: 139 HLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEA----------------- 181
Query: 284 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDXXXXXXXXXXXXXXXTDKTLEL 343
GAR+ G A + L +L + GLT A K + +
Sbjct: 182 GARVLGQGLA--DSACQLETLRLENCGLTPANCKDLCG---------------------I 218
Query: 344 ISGLTGLVSLNVSNSRITSAGLRHL-----KPLKNLRSLTLESCKVTANDIKRL 392
++ L L++ ++ + AG+ L P L++L L C +TA+ + L
Sbjct: 219 VASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDL 272
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 130 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 186
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 227
Query: 187 DSCGIGD 193
D + D
Sbjct: 228 DGNSLSD 234
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL---GFNEITDECLV-HLKGLTN 180
DS S+LGSL +L+L+ LS+ F + SL LNL + + + L HL L
Sbjct: 68 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 127
Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
L N+D+ + GL L+ LE+ + + S + L + N+
Sbjct: 128 LRVGNMDTFTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 174
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL---GFNEITDECLV-HLKGLTN 180
DS S+LGSL +L+L+ LS+ F + SL LNL + + + L HL L
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Query: 181 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
L N+D+ + GL L+ LE+ + + S + L + N+
Sbjct: 154 LRVGNMDTFTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 126 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 105
Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 235
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 106 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 126 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 106
Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 235
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 107 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 126 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 105
Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 235
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 106 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 126 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 235
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 126 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 106
Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 235
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 107 LVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGS 217
+L+L N + L L T L LNLD C + + + G L L L+LS Q+ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQS 91
Query: 218 SGL--RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXX 275
L + L LT L+ +SF ++ L L GL L+ L L ++
Sbjct: 92 LPLLGQTLPALTVLD---VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 276 XXXXXDLFGARITDSGAAYLRNFKNLRSL 304
L ++T+ A L +NL +L
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGLENLDTL 177
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 124 LDSLSALGSLFYLNLNRCQL-----------------SDDGCEKFSKIG----SLKVLNL 162
L +L L LNL+RC+L S + + +G +L VL++
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107
Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
FN +T L L+GL L+ L L + LT L+ L L++ Q+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 223 LSGLTNLESI 232
L+GL NL+++
Sbjct: 168 LNGLENLDTL 177
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGS 217
+L+L N + L L T L LNLD C + + + G L L L+LS Q+ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQS 91
Query: 218 SGL--RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXX 275
L + L LT L+ +SF ++ L L GL L+ L L ++
Sbjct: 92 LPLLGQTLPALTVLD---VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 276 XXXXXDLFGARITDSGAAYLRNFKNLRSL 304
L ++T+ A L +NL +L
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGLENLDTL 177
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 124 LDSLSALGSLFYLNLNRCQL-----------------SDDGCEKFSKIG----SLKVLNL 162
L +L L LNL+RC+L S + + +G +L VL++
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107
Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
FN +T L L+GL L+ L L + LT L+ L L++ Q+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 223 LSGLTNLESI 232
L+GL NL+++
Sbjct: 168 LNGLENLDTL 177
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 153 KIGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
K+ LKVL+L FNE + E L L+ +L +L+L S L NL EL
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 212 DTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
G +G LS + L S++LSF +S L LS L+ L L
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 118 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVH 174
PVT L SL + L +LN++ L G K S K+ SL+VL+L N I+ +V
Sbjct: 112 PVTT--LTSLGSCSGLKFLNVSSNTLDFPG--KVSGGLKLNSLEVLDLSANSISGANVVG 167
Query: 175 L---KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
G L+ L + I G V+++ NL+ L++S S+G+ L + L+
Sbjct: 168 WVLSDGCGELKHLAISGNKI--SGDVDVSRCVNLEFLDVSSNNF-STGIPFLGDCSALQH 224
Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
+++S +S R ++ + LK LN+ + Q
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 153 KIGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
K+ LKVL+L FNE + E L L+ +L +L+L S L NL EL
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 212 DTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
G +G LS + L S++LSF +S L LS L+ L L
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 118 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVH 174
PVT L SL + L +LN++ L G K S K+ SL+VL+L N I+ +V
Sbjct: 115 PVTT--LTSLGSCSGLKFLNVSSNTLDFPG--KVSGGLKLNSLEVLDLSANSISGANVVG 170
Query: 175 L---KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
G L+ L + I G V+++ NL+ L++S S+G+ L + L+
Sbjct: 171 WVLSDGCGELKHLAISGNKI--SGDVDVSRCVNLEFLDVSSNNF-STGIPFLGDCSALQH 227
Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
+++S +S R ++ + LK LN+ + Q
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLE 230
+GL NL+SL L+ GI ++ L NLK L++ ++ + + G + HL L L+
Sbjct: 180 QGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 130 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 186
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 227
Query: 187 D 187
D
Sbjct: 228 D 228
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 350 LVSLNVSNSRITS-AGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLV 401
L LN+S ++I + + LK L+NL+SL L +C+VT ND + + LP L
Sbjct: 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGS 217
+L+L N + L L T L LNLD C + + + G L L L+LS Q+ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQS 91
Query: 218 SGL--RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXX 275
L + L LT L+ +SF ++ L L GL L+ L L ++
Sbjct: 92 LPLLGQTLPALTVLD---VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 276 XXXXXDLFGARITDSGAAYLRNFKNLRSL 304
L ++T+ A L +NL +L
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 130 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 186
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 163 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 221
Query: 187 D 187
D
Sbjct: 222 D 222
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGS 217
+L+L N + L L T L LNLD C + + + G L L L+LS Q+ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQS 91
Query: 218 SGL--RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXX 275
L + L LT L+ +SF ++ L L GL L+ L L ++
Sbjct: 92 LPLLGQTLPALTVLD---VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 276 XXXXXDLFGARITDSGAAYLRNFKNLRSL 304
L ++T+ A L +NL +L
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 130 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 186
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 227
Query: 187 D 187
D
Sbjct: 228 D 228
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 130 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 186
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 163 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 221
Query: 187 D 187
D
Sbjct: 222 D 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,956,872
Number of Sequences: 62578
Number of extensions: 299866
Number of successful extensions: 1059
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 302
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)