Query 015457
Match_columns 406
No_of_seqs 261 out of 3119
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 06:29:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-40 4.8E-45 330.6 20.5 392 7-403 138-576 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.9E-40 6.4E-45 329.7 19.5 356 28-386 206-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 4E-38 8.7E-43 271.6 1.7 370 10-384 79-451 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.9E-35 4.2E-40 255.1 3.0 369 14-386 57-430 (873)
5 KOG0444 Cytoskeletal regulator 99.9 5.9E-29 1.3E-33 217.4 -4.5 347 2-359 25-373 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 3.1E-29 6.8E-34 219.1 -6.2 366 7-383 5-373 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 8.6E-28 1.9E-32 199.0 -9.1 375 5-392 64-548 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 1.5E-25 3.2E-30 185.9 -5.8 347 2-361 153-541 (565)
9 KOG0618 Serine/threonine phosp 99.9 8.3E-25 1.8E-29 199.2 -1.7 370 1-386 60-490 (1081)
10 PLN03210 Resistant to P. syrin 99.9 7.6E-22 1.7E-26 198.1 17.8 308 35-359 590-904 (1153)
11 PLN03210 Resistant to P. syrin 99.9 3.5E-21 7.6E-26 193.4 19.3 341 26-383 550-904 (1153)
12 KOG0618 Serine/threonine phosp 99.9 2.5E-24 5.4E-29 196.2 -3.9 380 6-404 42-482 (1081)
13 cd00116 LRR_RI Leucine-rich re 99.9 2.1E-19 4.5E-24 157.8 23.0 277 88-383 3-318 (319)
14 cd00116 LRR_RI Leucine-rich re 99.8 1.1E-18 2.4E-23 153.2 23.3 278 62-360 2-319 (319)
15 KOG4237 Extracellular matrix p 99.8 4.9E-21 1.1E-25 158.9 -2.3 132 83-214 67-199 (498)
16 KOG4237 Extracellular matrix p 99.7 6.8E-20 1.5E-24 152.2 -1.8 276 108-386 68-360 (498)
17 PRK15387 E3 ubiquitin-protein 99.7 3.3E-16 7.2E-21 147.1 13.2 242 108-391 223-464 (788)
18 PRK15387 E3 ubiquitin-protein 99.7 4.5E-16 9.7E-21 146.3 12.6 243 84-368 223-465 (788)
19 KOG1909 Ran GTPase-activating 99.6 1.4E-14 3.1E-19 119.1 12.8 192 201-393 90-321 (382)
20 PRK15370 E3 ubiquitin-protein 99.6 6.1E-15 1.3E-19 139.5 11.9 254 108-392 179-435 (754)
21 PRK15370 E3 ubiquitin-protein 99.6 9.1E-15 2E-19 138.3 9.7 251 84-365 179-432 (754)
22 KOG1909 Ran GTPase-activating 99.5 4.9E-13 1.1E-17 110.2 12.7 133 227-360 157-310 (382)
23 KOG0617 Ras suppressor protein 99.4 4.1E-15 8.9E-20 109.9 -7.0 156 32-193 31-187 (264)
24 KOG0617 Ras suppressor protein 99.3 6.5E-15 1.4E-19 108.8 -7.0 156 81-241 31-187 (264)
25 KOG4341 F-box protein containi 99.3 3.7E-12 7.9E-17 107.6 7.0 301 59-382 139-462 (483)
26 KOG2120 SCF ubiquitin ligase, 99.3 3E-12 6.6E-17 103.4 5.4 179 205-383 187-374 (419)
27 KOG3207 Beta-tubulin folding c 99.3 1.6E-12 3.5E-17 110.3 1.6 211 176-387 118-341 (505)
28 KOG4341 F-box protein containi 99.2 1.3E-11 2.9E-16 104.3 5.1 302 34-357 138-461 (483)
29 KOG2120 SCF ubiquitin ligase, 99.2 1.7E-11 3.7E-16 99.1 4.4 197 179-376 185-391 (419)
30 KOG3207 Beta-tubulin folding c 99.2 4E-12 8.6E-17 108.0 0.3 230 153-382 119-364 (505)
31 PF14580 LRR_9: Leucine-rich r 99.1 2.6E-11 5.6E-16 93.7 3.5 130 249-383 17-151 (175)
32 KOG4658 Apoptotic ATPase [Sign 99.1 2.1E-11 4.6E-16 117.6 3.6 107 82-189 544-652 (889)
33 PF14580 LRR_9: Leucine-rich r 99.1 4.8E-11 1E-15 92.2 3.0 130 225-358 17-150 (175)
34 KOG4658 Apoptotic ATPase [Sign 99.0 1E-10 2.2E-15 113.0 3.1 181 32-217 543-731 (889)
35 KOG1259 Nischarin, modulator o 99.0 1.7E-10 3.7E-15 93.6 2.1 128 251-385 284-412 (490)
36 COG5238 RNA1 Ran GTPase-activa 99.0 3.9E-09 8.5E-14 84.6 9.6 45 174-218 87-135 (388)
37 KOG1259 Nischarin, modulator o 99.0 2E-10 4.3E-15 93.2 1.4 59 8-67 181-246 (490)
38 COG5238 RNA1 Ran GTPase-activa 98.8 1.3E-07 2.7E-12 76.2 13.3 90 176-265 27-134 (388)
39 PF13855 LRR_8: Leucine rich r 98.8 1.8E-09 3.9E-14 68.5 0.7 61 323-384 1-61 (61)
40 KOG2982 Uncharacterized conser 98.7 1.7E-08 3.8E-13 82.1 4.1 204 177-380 69-287 (418)
41 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.4E-13 64.9 1.9 9 154-162 48-56 (61)
42 KOG3665 ZYG-1-like serine/thre 98.6 1.1E-07 2.4E-12 90.0 8.7 153 227-381 122-284 (699)
43 KOG3665 ZYG-1-like serine/thre 98.6 1.4E-07 3.1E-12 89.3 9.0 151 250-403 121-280 (699)
44 PLN03150 hypothetical protein; 98.6 6E-08 1.3E-12 92.0 6.5 106 277-383 420-526 (623)
45 COG4886 Leucine-rich repeat (L 98.5 1.3E-07 2.8E-12 85.6 6.3 61 249-312 230-290 (394)
46 PLN03150 hypothetical protein; 98.5 1.8E-07 3.8E-12 88.8 7.5 106 109-214 420-526 (623)
47 KOG2982 Uncharacterized conser 98.5 5.3E-08 1.1E-12 79.3 2.9 185 202-386 70-263 (418)
48 COG4886 Leucine-rich repeat (L 98.5 1.2E-07 2.5E-12 85.9 5.4 198 87-293 97-295 (394)
49 KOG1859 Leucine-rich repeat pr 98.4 1.1E-08 2.3E-13 93.2 -4.2 128 253-387 166-294 (1096)
50 KOG0532 Leucine-rich repeat (L 98.4 1.6E-08 3.5E-13 89.4 -3.7 171 87-266 79-249 (722)
51 KOG1859 Leucine-rich repeat pr 98.3 1.8E-08 3.9E-13 91.8 -5.2 126 157-288 166-292 (1096)
52 KOG0531 Protein phosphatase 1, 98.3 3.7E-08 8.1E-13 89.2 -3.6 245 128-387 69-320 (414)
53 KOG0531 Protein phosphatase 1, 98.3 3E-08 6.5E-13 89.8 -4.6 245 104-362 69-319 (414)
54 KOG0532 Leucine-rich repeat (L 98.3 3.8E-08 8.3E-13 87.1 -4.2 135 172-313 114-248 (722)
55 KOG1947 Leucine rich repeat pr 98.3 1E-06 2.2E-11 82.3 4.9 239 30-288 184-440 (482)
56 KOG1947 Leucine rich repeat pr 98.2 4E-06 8.7E-11 78.3 8.0 132 177-308 186-330 (482)
57 KOG4579 Leucine-rich repeat (L 97.9 2.1E-06 4.6E-11 61.8 -0.1 133 251-387 27-161 (177)
58 KOG1644 U2-associated snRNP A' 97.9 1.1E-05 2.3E-10 62.4 3.4 130 254-387 22-155 (233)
59 KOG1644 U2-associated snRNP A' 97.9 1.6E-05 3.5E-10 61.4 3.9 109 250-360 41-152 (233)
60 PF12799 LRR_4: Leucine Rich r 97.9 2.5E-05 5.4E-10 45.2 3.7 38 348-386 1-38 (44)
61 KOG3864 Uncharacterized conser 97.8 1.6E-05 3.4E-10 61.5 3.2 83 277-359 103-187 (221)
62 PF13306 LRR_5: Leucine rich r 97.7 1.4E-05 3.1E-10 59.7 1.4 10 321-330 79-88 (129)
63 KOG2123 Uncharacterized conser 97.7 8E-06 1.7E-10 66.3 -0.5 80 275-359 19-99 (388)
64 PF13306 LRR_5: Leucine rich r 97.6 8.2E-05 1.8E-09 55.5 4.5 82 5-91 8-89 (129)
65 KOG4579 Leucine-rich repeat (L 97.6 9.8E-06 2.1E-10 58.5 -0.6 86 224-311 50-135 (177)
66 KOG2123 Uncharacterized conser 97.6 1.1E-05 2.4E-10 65.5 -0.9 78 252-333 20-98 (388)
67 KOG3864 Uncharacterized conser 97.6 4.9E-05 1.1E-09 58.9 2.5 82 301-382 103-186 (221)
68 PF12799 LRR_4: Leucine Rich r 97.5 0.00029 6.4E-09 40.7 4.2 35 156-191 2-36 (44)
69 PRK15386 type III secretion pr 97.4 0.00068 1.5E-08 59.8 7.9 136 29-189 47-187 (426)
70 KOG2739 Leucine-rich acidic nu 97.2 0.00015 3.3E-09 58.6 1.5 14 275-288 91-104 (260)
71 KOG2739 Leucine-rich acidic nu 97.2 0.00014 2.9E-09 58.9 1.0 63 104-166 62-127 (260)
72 PRK15386 type III secretion pr 96.9 0.0027 5.8E-08 56.1 6.8 78 221-311 46-124 (426)
73 KOG4308 LRR-containing protein 96.9 0.00024 5.1E-09 64.9 0.1 182 85-266 89-305 (478)
74 KOG4308 LRR-containing protein 96.0 0.0012 2.7E-08 60.3 -1.1 181 181-362 89-304 (478)
75 smart00367 LRR_CC Leucine-rich 94.5 0.056 1.2E-06 26.9 2.7 24 8-31 1-24 (26)
76 PF13516 LRR_6: Leucine Rich r 93.8 0.055 1.2E-06 26.3 1.9 21 372-392 2-22 (24)
77 smart00367 LRR_CC Leucine-rich 93.6 0.12 2.6E-06 25.7 2.9 23 322-344 1-23 (26)
78 PF13516 LRR_6: Leucine Rich r 93.2 0.052 1.1E-06 26.4 1.2 15 300-314 3-17 (24)
79 PF00560 LRR_1: Leucine Rich R 92.7 0.04 8.7E-07 26.2 0.3 14 349-362 1-14 (22)
80 PF13504 LRR_7: Leucine rich r 92.1 0.09 2E-06 23.1 1.1 10 350-359 3-12 (17)
81 smart00369 LRR_TYP Leucine-ric 87.6 0.43 9.2E-06 23.6 1.5 21 348-368 2-22 (26)
82 smart00370 LRR Leucine-rich re 87.6 0.43 9.2E-06 23.6 1.5 21 348-368 2-22 (26)
83 smart00368 LRR_RI Leucine rich 87.3 0.95 2.1E-05 22.9 2.7 21 372-392 2-22 (28)
84 KOG3763 mRNA export factor TAP 84.2 1.4 3E-05 40.5 4.0 65 296-361 215-283 (585)
85 smart00365 LRR_SD22 Leucine-ri 67.8 3.7 8E-05 20.4 1.2 12 349-360 3-14 (26)
86 KOG3763 mRNA export factor TAP 65.9 8 0.00017 35.9 3.7 63 225-288 216-283 (585)
87 KOG0473 Leucine-rich repeat pr 51.2 0.3 6.5E-06 39.5 -6.7 17 78-94 37-53 (326)
88 KOG0473 Leucine-rich repeat pr 43.3 0.72 1.6E-05 37.4 -5.7 85 54-142 38-122 (326)
89 smart00364 LRR_BAC Leucine-ric 42.0 17 0.00037 18.1 1.1 15 372-386 2-16 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-40 Score=330.60 Aligned_cols=392 Identities=22% Similarity=0.232 Sum_probs=194.8
Q ss_pred CCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCcc
Q 015457 7 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86 (406)
Q Consensus 7 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 86 (406)
.+++|++|++++|. +....+..+..+++|++|++++|......+..+.++++|++|++++|. +....+..+..+++|+
T Consensus 138 ~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 138 SIPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLK 215 (968)
T ss_pred ccCCCCEEECcCCc-ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCcc
Confidence 34555555555554 223334445555555555555554333334445555555555555433 2222334444455555
Q ss_pred EEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCc
Q 015457 87 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166 (406)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (406)
+|++++|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 55555554444444444445555555555544444444444444445555444444443333444444444444444444
Q ss_pred ------------------------cchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHh
Q 015457 167 ------------------------ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222 (406)
Q Consensus 167 ------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 222 (406)
+.+..|..+..+++|+.|++.+|.+....+..+..+++|+.+++++|.+....+..
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 44333444444444444444444443333333444444444444444433322233
Q ss_pred hcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcC----
Q 015457 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF---- 298 (406)
Q Consensus 223 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---- 298 (406)
+..+++|+.+++.+|.+....+..+..+++|+.|++++|.+++..+..+..++.|+.+++++|.+++..+..+..+
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 3333333444443333333333344445555555555555544333444444555555555544443333322233
Q ss_pred -------------------CCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCc
Q 015457 299 -------------------KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359 (406)
Q Consensus 299 -------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 359 (406)
++|+.|++++|.+.+..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.
T Consensus 456 ~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred EEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCC-cceeeCChHHcCccCCCEEECCCCc
Confidence 44555555555555555555666667777777776 5555566666677777777777777
Q ss_pred cChhHHHhcCCCCCccEEEccCCCCChhhHHHHhhcCCCCcccc
Q 015457 360 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403 (406)
Q Consensus 360 ~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l 403 (406)
+++..+..+..+++|+.|++++|+++......+ ..++.|+.+
T Consensus 535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~l 576 (968)
T PLN00113 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL--GNVESLVQV 576 (968)
T ss_pred ccccCChhHhCcccCCEEECCCCcccccCChhH--hcCcccCEE
Confidence 776666666777777777777777664333333 234444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-40 Score=329.73 Aligned_cols=356 Identities=19% Similarity=0.187 Sum_probs=237.5
Q ss_pred HHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCC
Q 015457 28 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 107 (406)
Q Consensus 28 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 107 (406)
..+.++++|++|++++|......+..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+.+++
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 284 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc
Confidence 333444444444444443322333334445555555555432 2223344455556666666665555544455555666
Q ss_pred CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEcc
Q 015457 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187 (406)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 187 (406)
+|+.|++++|.+.+..|..+..+++|++|++.+|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.++++
T Consensus 285 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECC
Confidence 66666666666665556666666777777777776666566667777888888888887776677777777778888887
Q ss_pred CCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCC------------------------CCCcEEeccCCCCChhH
Q 015457 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL------------------------TNLESINLSFTGISDGS 243 (406)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~------------------------~~L~~L~l~~~~~~~~~ 243 (406)
+|.+....+..+..+++|+.+++.+|.+....+..++.+ ++|+.+++++|.++...
T Consensus 365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 444 (968)
T PLN00113 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444 (968)
T ss_pred CCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc
Confidence 776654444444444555555555554444334444444 44455555444444433
Q ss_pred HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCC
Q 015457 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323 (406)
Q Consensus 244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 323 (406)
+..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..++
T Consensus 445 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 445 NSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred ChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence 3334445555556665555544322222 346788888888888877777888899999999999999988888899999
Q ss_pred CCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 386 (406)
+|+.|++++| .+....+..+..+++|+.|++++|++.+..+..+..+++|+.+++++|++..
T Consensus 524 ~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 524 KLVSLDLSHN-QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CCCEEECCCC-cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9999999999 7888888899999999999999999998888888899999999999999875
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4e-38 Score=271.55 Aligned_cols=370 Identities=23% Similarity=0.310 Sum_probs=318.4
Q ss_pred CCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEE
Q 015457 10 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 89 (406)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 89 (406)
.-+.|++++|. +..+.+..|..+++|+++++..|. ....|...+...+|+.|++.+ +.++....+.++.++.|+.|+
T Consensus 79 ~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccc-cccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhh
Confidence 45679999887 677788889999999999998876 444455555566799999998 567777778888899999999
Q ss_pred eccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccch
Q 015457 90 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169 (406)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 169 (406)
++.|.++......|..-.++++|++++|.++..-.+.|..+.+|..|.++.|.++......|.++++|+.|++..|.+..
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 99999887777777777889999999999988877888889999999999999998888889999999999999998864
Q ss_pred hHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhC
Q 015457 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249 (406)
Q Consensus 170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 249 (406)
.-...|..+++|+.+.+..|.+......+|..+.+++++++..|.+......++-++..|+.|++++|.+.......+..
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 44567888999999999999988888888888999999999999988777777788899999999999998888888999
Q ss_pred CCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChH---HHHhhhcCCCCC
Q 015457 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA---GVKHIKDLSSLT 326 (406)
Q Consensus 250 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~ 326 (406)
+++|+.|+++.|.++......+..+..|++|+++.|.++......+..+++|++|++++|.+... ....|..+++|+
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 99999999999999998888888889999999999999988888888999999999999876532 344577799999
Q ss_pred EEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCC
Q 015457 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384 (406)
Q Consensus 327 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~ 384 (406)
.|.+.+| .+....-..+.++++|++|++.+|.|..+.+.+|..+ .|++|.+..-.+
T Consensus 396 kL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 396 KLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred heeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 9999999 8888888899999999999999999998889999888 888888876543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-35 Score=255.06 Aligned_cols=369 Identities=23% Similarity=0.245 Sum_probs=314.0
Q ss_pred eeccCCccCCHHHHHHHhcC--CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEec
Q 015457 14 LSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 91 (406)
Q Consensus 14 L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (406)
|+.++.. +..+....+.++ +.-+.|++++|..-...+..|.++++|+.+++..+ .++. .+.......+|+.|++.
T Consensus 57 ldcs~~~-lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~-IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 57 LDCSDRE-LEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTR-IPRFGHESGHLEKLDLR 133 (873)
T ss_pred eecCccc-cccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhh-cccccccccceeEEeee
Confidence 3444433 333333444443 34456999998866666677899999999999874 3332 34445566789999999
Q ss_pred cCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhH
Q 015457 92 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171 (406)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (406)
+|.|+......++.++.|++||++.|.+.......+..-.++++|++++|.++....+.|..+.+|-.|.++.|.++...
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 99999888888999999999999999888765555666688999999999999888889999999999999999999777
Q ss_pred HhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCC
Q 015457 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251 (406)
Q Consensus 172 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 251 (406)
+..|.++++|+.|++..|++.......|.++++|+.+.+..|.+.......|-.+.++++|++..|.+......++.+++
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 78888899999999999988766677889999999999999998887777788899999999999999888888888999
Q ss_pred CCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEecc
Q 015457 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331 (406)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 331 (406)
.|+.|+++.|.+.......+.-+++|+.|++++|.++...+..+..+..|++|.+++|.+.......|..+.+|+.|+++
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 99999999999999888888889999999999999999889999999999999999999988877778889999999999
Q ss_pred CCCCCChhHH---HHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457 332 QNCNLTDKTL---ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 332 ~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 386 (406)
.| .+.+.+. ..+.++++|+.|++.||++..+.-.+|.+++.|+.|++.+|.+-.
T Consensus 374 ~N-~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 374 SN-ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred CC-eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 99 6665433 456789999999999999999888999999999999999998765
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=5.9e-29 Score=217.41 Aligned_cols=347 Identities=22% Similarity=0.218 Sum_probs=216.8
Q ss_pred cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC
Q 015457 2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81 (406)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 81 (406)
|.....+++++.|.+..+. + ...|+.++.+.+|+.|.+.+|... ..-..+..+|.|+++.+++++.-..-.+..+..
T Consensus 25 P~~v~qMt~~~WLkLnrt~-L-~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~ 101 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTK-L-EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR 101 (1255)
T ss_pred chhHHHhhheeEEEechhh-h-hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcc
Confidence 5555667777777776664 2 334666777777777777776522 223346667777777777765555555666677
Q ss_pred CCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEE
Q 015457 82 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161 (406)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (406)
+..|+.|+++.|.+. +.+..+...+++-+|++++|.+..+....+..++.|-.|++++|++.. .|..+..+.+|++|.
T Consensus 102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLK 179 (1255)
T ss_pred cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhh
Confidence 777777777777766 345566667777777777777776655556667777777777777653 444556667777777
Q ss_pred ecCCccchhHHhhhcCCCCCCeEEccCCCCC-hhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCC
Q 015457 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240 (406)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 240 (406)
+++|++...-...+..+.+|+.|.+++.+-+ ...|..+..+.+|..++++.|.+... +..+.++++|+.|++++|.++
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCcee
Confidence 7777765433333445555666666655322 23444555666777777777666543 445556677777777777666
Q ss_pred hhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChh-HHHHhhcCCCCCEEEccCCCCChHHHHhh
Q 015457 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGVKHI 319 (406)
Q Consensus 241 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 319 (406)
+... ......+|++|+++.|+++.. +.++.++++|++|.+.+|+++-. .|+.++.+.+|+.+..++|.+.-. |+.+
T Consensus 259 eL~~-~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV-PEgl 335 (1255)
T KOG0444|consen 259 ELNM-TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV-PEGL 335 (1255)
T ss_pred eeec-cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC-chhh
Confidence 5322 122345667777777776665 35556666777776666666532 344566666666666666655444 5566
Q ss_pred hcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCc
Q 015457 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359 (406)
Q Consensus 320 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 359 (406)
..|+.|+.|.++.|. +. ..|+.+.-++.|+.||+..|+
T Consensus 336 cRC~kL~kL~L~~Nr-Li-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNR-LI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhHHHHHhcccccc-ee-echhhhhhcCCcceeeccCCc
Confidence 666777777666662 22 245555566666777776665
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=3.1e-29 Score=219.11 Aligned_cols=366 Identities=22% Similarity=0.228 Sum_probs=297.7
Q ss_pred CCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCcc
Q 015457 7 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86 (406)
Q Consensus 7 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 86 (406)
=+|=+|-.++++|..-.+.-|..+..+..++-|.+.... ....|+.++.+++|++|.+.+++.++ ..+.++.+|.|+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL~~lqkLEHLs~~HN~L~~--vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEELSRLQKLEHLSMAHNQLIS--VHGELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhhChHHHHHHhhhhhhhhhhhhhHh--hhhhhccchhhH
Confidence 355667788999885545667888999999999997644 55678889999999999999976544 446678899999
Q ss_pred EEEeccCccChh-HHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCC
Q 015457 87 SLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165 (406)
Q Consensus 87 ~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (406)
.+.+..|.+... .+..+..+..|..|++++|.+... |..+....++-.|++++|.+..+....|.++..|-.|++++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 999988876443 356678899999999999998775 888888999999999999998776667778899999999999
Q ss_pred ccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCc-hhHHhhcCCCCCcEEeccCCCCChhHH
Q 015457 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSL 244 (406)
Q Consensus 166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~ 244 (406)
.+. ..|..++.+.+|+.|.+++|.+.......+..+.+|+.|.+++..-+- ..+..+..+.+|..++++.|.+.. .+
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-ch
Confidence 988 555557889999999999998765555556667788888888765322 234456677899999999998876 67
Q ss_pred HHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHH-HHhhhcCC
Q 015457 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLS 323 (406)
Q Consensus 245 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~ 323 (406)
+.+..+++|+.|++++|++++... ......+|++|++++|+++. .|.++..++.|+.|.+.+|.++-.+ |..++++.
T Consensus 239 ecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 788899999999999999988532 23345689999999999986 4777889999999999999866443 66788999
Q ss_pred CCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCC
Q 015457 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383 (406)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~ 383 (406)
.|+.+...+| .....|+.+++|..|+.|.++.|++.. .++++.-++.|+.|++..|+
T Consensus 317 ~Levf~aanN--~LElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 317 QLEVFHAANN--KLELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhHHHHhhcc--ccccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCc
Confidence 9999999998 455678999999999999999999655 56777788999999999996
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=8.6e-28 Score=199.03 Aligned_cols=375 Identities=21% Similarity=0.219 Sum_probs=232.8
Q ss_pred ccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcC------------
Q 015457 5 LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT------------ 72 (406)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------ 72 (406)
+.++..+.+|++.+++. ...|+++.....++.++++++. ....++++...++++.++++.+...+
T Consensus 64 l~nL~~l~vl~~~~n~l--~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKL--SQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLE 140 (565)
T ss_pred hhcccceeEEEeccchh--hhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhh
Confidence 34455555666655542 1223444444455555555443 22334444444444444444432211
Q ss_pred ---------cCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccC
Q 015457 73 ---------DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 143 (406)
Q Consensus 73 ---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 143 (406)
...+..+.++.++..+++.++++...++..+. ++.|++++...|.+... |..++++.+|+.|++..|++
T Consensus 141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhccc
Confidence 11334445556666666666666654444333 67777777777665553 66778888888888888887
Q ss_pred ChhhhhhccCCCCccEEEecCCccchhHHh-hhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHh
Q 015457 144 SDDGCEKFSKIGSLKVLNLGFNEITDECLV-HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222 (406)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 222 (406)
.. .| .|..+..|+.++++.|.+. ..|. ...+++++..|++.+|++.. .|..+..+.+|.+|++++|.++.. +..
T Consensus 219 ~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~L-p~s 293 (565)
T KOG0472|consen 219 RF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISSL-PYS 293 (565)
T ss_pred cc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccccC-Ccc
Confidence 64 33 6777888888888888876 4444 44588899999999998854 455666788899999999988654 456
Q ss_pred hcCCCCCcEEeccCCCCChhHH-----------HHhh------------------------------CCCCCcEEECCCC
Q 015457 223 LSGLTNLESINLSFTGISDGSL-----------RKLA------------------------------GLSSLKSLNLDAR 261 (406)
Q Consensus 223 l~~~~~L~~L~l~~~~~~~~~~-----------~~l~------------------------------~~~~L~~L~l~~~ 261 (406)
++++ +|+.|.+.+|.+...-. ..+. ..-+.+.|.+++-
T Consensus 294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK 372 (565)
T ss_pred cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence 7777 88888887775421100 0000 0113444555554
Q ss_pred CCChHHHHHHhc--CCCCCEEEccCCCCChh-----------------------HHHHhhcCCCCCEEEccCCCCChHHH
Q 015457 262 QITDTGLAALTS--LTGLTHLDLFGARITDS-----------------------GAAYLRNFKNLRSLEICGGGLTDAGV 316 (406)
Q Consensus 262 ~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~-----------------------~~~~~~~~~~L~~L~l~~~~~~~~~~ 316 (406)
+++..+.+.|.. -.-...+++++|++.+. .+..+..+++|..|++++|.+.+. |
T Consensus 373 qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P 451 (565)
T KOG0472|consen 373 QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-P 451 (565)
T ss_pred ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-c
Confidence 454443333321 12245556666554432 123345677888888888766655 5
Q ss_pred HhhhcCCCCCEEeccCCC----------------------CCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCc
Q 015457 317 KHIKDLSSLTLLNLSQNC----------------------NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374 (406)
Q Consensus 317 ~~~~~~~~L~~L~l~~~~----------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 374 (406)
..++.+..|+.|+++.|. .+....++.+.++++|..||+.+|.+..+ |..+++|.+|
T Consensus 452 ~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~LgnmtnL 530 (565)
T KOG0472|consen 452 EEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMTNL 530 (565)
T ss_pred hhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC-Chhhccccce
Confidence 556667778888887773 23333445678899999999999998764 4467999999
Q ss_pred cEEEccCCCCChhhHHHH
Q 015457 375 RSLTLESCKVTANDIKRL 392 (406)
Q Consensus 375 ~~l~l~~~~~~~~~~~~~ 392 (406)
+.++++||++..+.-+-+
T Consensus 531 ~hLeL~gNpfr~Pr~~iL 548 (565)
T KOG0472|consen 531 RHLELDGNPFRQPRHQIL 548 (565)
T ss_pred eEEEecCCccCCCHHHHh
Confidence 999999999987765544
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=1.5e-25 Score=185.93 Aligned_cols=347 Identities=23% Similarity=0.255 Sum_probs=212.3
Q ss_pred cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC
Q 015457 2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81 (406)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 81 (406)
|.+++.+.++..+++.++. +...++..+. ++.|+.|+..++. ....|+.++.+.+|+.|+++.+. +.. ...|..
T Consensus 153 p~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nk-i~~--lPef~g 226 (565)
T KOG0472|consen 153 PEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNK-IRF--LPEFPG 226 (565)
T ss_pred chHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcc-ccc--CCCCCc
Confidence 4455555555666666554 2333334444 6666666665554 33455566677777777777643 332 225666
Q ss_pred CCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEE
Q 015457 82 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161 (406)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (406)
|..|+++.+..|.+...+....++++++.+||+.+|++... |+.+..+.+|++|++++|.++. .|..++++ +|+.|.
T Consensus 227 cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 227 CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLA 303 (565)
T ss_pred cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC-chHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehh
Confidence 77777777777776654445556777777777777777664 6677777777778877777764 45566666 777777
Q ss_pred ecCCccchhHHhhhcCCC--CCCeEE-------ccCCCCC--------hhhhHhhhCCCCCCEEEcCCCcCCchhHHhhc
Q 015457 162 LGFNEITDECLVHLKGLT--NLESLN-------LDSCGIG--------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224 (406)
Q Consensus 162 l~~~~~~~~~~~~~~~~~--~L~~L~-------l~~~~~~--------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~ 224 (406)
+.+|++...--+.+...+ -|++|. ++..+-. ...........+.+.|+++.-.++..+...|.
T Consensus 304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfe 383 (565)
T KOG0472|consen 304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFE 383 (565)
T ss_pred hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHH
Confidence 777765421111111000 011110 0000000 00001111223455555555554444333332
Q ss_pred CC--CCCcEEeccCCCC-----------------------ChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCE
Q 015457 225 GL--TNLESINLSFTGI-----------------------SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279 (406)
Q Consensus 225 ~~--~~L~~L~l~~~~~-----------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 279 (406)
.. .-++.++++.|.+ .+..+..++.+++|..|++++|.+...+ ..++.+..|+.
T Consensus 384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP-~e~~~lv~Lq~ 462 (565)
T KOG0472|consen 384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLP-EEMGSLVRLQT 462 (565)
T ss_pred HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcc-hhhhhhhhhhe
Confidence 11 1233344443322 2234455677889999999998887764 44455677999
Q ss_pred EEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCc
Q 015457 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359 (406)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 359 (406)
++++.|++.. .|.++.....++.+-.++|++....+..+..+.+|++|++.+| .+ ..+|..++++.+|++|+++||+
T Consensus 463 LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dl-q~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 463 LNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DL-QQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred eccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC-ch-hhCChhhccccceeEEEecCCc
Confidence 9999998865 3555555666777777889998887777889999999999998 34 4567788999999999999999
Q ss_pred cC
Q 015457 360 IT 361 (406)
Q Consensus 360 ~~ 361 (406)
|.
T Consensus 540 fr 541 (565)
T KOG0472|consen 540 FR 541 (565)
T ss_pred cC
Confidence 87
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=8.3e-25 Score=199.25 Aligned_cols=370 Identities=21% Similarity=0.236 Sum_probs=250.2
Q ss_pred CcccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCcccccc
Q 015457 1 MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 80 (406)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 80 (406)
+|..++.+++|+.|+++.+.. .+ .+....++.+|+++.|.++. ....|..+..+.+|+.|+++.+.... .+..+.
T Consensus 60 fp~~it~l~~L~~ln~s~n~i-~~-vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~ 134 (1081)
T KOG0618|consen 60 FPIQITLLSHLRQLNLSRNYI-RS-VPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHFGP--IPLVIE 134 (1081)
T ss_pred CCchhhhHHHHhhcccchhhH-hh-Cchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhccCC--CchhHH
Confidence 366778888999999998863 33 34667788999999998876 55567778888899999998864432 112222
Q ss_pred CCCC-------------------ccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHh-------------
Q 015457 81 GLTN-------------------LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS------------- 128 (406)
Q Consensus 81 ~~~~-------------------L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------- 128 (406)
.+.. ++.+++..+.+.+.....+..+.+ .|++.+|.+.......+.
T Consensus 135 ~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls 212 (1081)
T KOG0618|consen 135 VLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLS 212 (1081)
T ss_pred hhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccc
Confidence 2222 333333333333333333333333 367776655421111111
Q ss_pred ----cCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCC
Q 015457 129 ----ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 204 (406)
Q Consensus 129 ----~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 204 (406)
.-++++.++...|.+..... -....++++++++++.+. ..|+++..+.+|+.+....|.++ ..+..+....+
T Consensus 213 ~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~ 288 (1081)
T KOG0618|consen 213 ELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITS 288 (1081)
T ss_pred eEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhh
Confidence 12444455555554442111 112357889999998887 55688888899999999888774 33445556667
Q ss_pred CCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhh-------------------------CCCCCcEEECC
Q 015457 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-------------------------GLSSLKSLNLD 259 (406)
Q Consensus 205 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-------------------------~~~~L~~L~l~ 259 (406)
|+.+.+..|.+... +.......+|++|++..|.+.......+. ..+.|+.|.+.
T Consensus 289 L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 289 LVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHHHhhhhhhhhC-CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 77777777776543 34455567777777777765432211110 12457777888
Q ss_pred CCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChh
Q 015457 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339 (406)
Q Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 339 (406)
+|.+++.....+..+++|+.|++++|++...+...+.+++.|++|+++||.++.. +..+..++.|++|...+| .+...
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN-~l~~f 445 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSN-QLLSF 445 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCC-ceeec
Confidence 8888887777888889999999999999888888889999999999999999887 577888999999998888 45443
Q ss_pred HHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 340 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 386 (406)
+ .+..++.|+.+|++.|.++..........++|++|+++||....
T Consensus 446 P--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 446 P--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred h--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence 3 67788999999999999988776665566899999999998543
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=7.6e-22 Score=198.08 Aligned_cols=308 Identities=21% Similarity=0.176 Sum_probs=147.8
Q ss_pred CCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEe
Q 015457 35 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114 (406)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 114 (406)
+|+.|.+.++. ....|..+ ...+|+.|++.++. +.. .+..+..+++|+.|+++++...... +.+..+++|+.|++
T Consensus 590 ~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~-l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSK-LEK-LWDGVHSLTGLRNIDLRGSKNLKEI-PDLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCC-CCCCCCcC-CccCCcEEECcCcc-ccc-cccccccCCCCCEEECCCCCCcCcC-CccccCCcccEEEe
Confidence 35555555543 22222222 24555666665532 221 2233445566666666544311111 12445556666666
Q ss_pred cCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChh
Q 015457 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194 (406)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 194 (406)
++|......|..+..+++|+.|++.+|......|..+ .+++|+.|++++|.....+|. ...+|+.|++.++.+...
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l 740 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF 740 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc
Confidence 6554434445555556666666666554322233222 455566666655543322222 124555666655554322
Q ss_pred hhHhhhCCCCCCEEEcCCCcCCc-------hhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHH
Q 015457 195 GLVNLTGLCNLKCLELSDTQVGS-------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267 (406)
Q Consensus 195 ~~~~~~~~~~L~~l~l~~~~~~~-------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 267 (406)
+..+ .+++|+.|.+.++.... ........+++|+.|++++|......+..++++++|+.|++++|......
T Consensus 741 -P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 741 -PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred -cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 1111 34455555554422110 00111122356666666665444444555666666666666665322211
Q ss_pred HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC
Q 015457 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347 (406)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 347 (406)
+... .+++|+.|++++|......+. ..++|+.|++++|.+... |..+..+++|+.|++++|.++.. .+.....+
T Consensus 819 P~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L 892 (1153)
T PLN03210 819 PTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQR-VSLNISKL 892 (1153)
T ss_pred CCCC-CccccCEEECCCCCccccccc---cccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCc-cCcccccc
Confidence 1111 456666666666543322211 134566666666666544 44556666666666666654443 23334455
Q ss_pred CCccEEEeeCCc
Q 015457 348 TGLVSLNVSNSR 359 (406)
Q Consensus 348 ~~L~~L~l~~~~ 359 (406)
++|+.+++++|.
T Consensus 893 ~~L~~L~l~~C~ 904 (1153)
T PLN03210 893 KHLETVDFSDCG 904 (1153)
T ss_pred cCCCeeecCCCc
Confidence 666666666664
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=3.5e-21 Score=193.37 Aligned_cols=341 Identities=20% Similarity=0.142 Sum_probs=241.7
Q ss_pred HHHHHhcCCCCcEeeccCccc------ccCccccccCCC-CccEEeecCCCCcCcCccccccCCCCccEEEeccCccChh
Q 015457 26 GMKAFAGLINLVKLDLERCTR------IHGGLVNLKGLM-KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 98 (406)
Q Consensus 26 ~~~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 98 (406)
....|.++++|+.|.+.+... ....+..+..++ +|+.|++.+++. .. .+..+ ...+|+.|++.++.+..
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~-lP~~f-~~~~L~~L~L~~s~l~~- 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RC-MPSNF-RPENLVKLQMQGSKLEK- 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CC-CCCcC-CccCCcEEECcCccccc-
Confidence 356789999999999975421 111233444544 699999988643 22 22233 56899999999988764
Q ss_pred HHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCC
Q 015457 99 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178 (406)
Q Consensus 99 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 178 (406)
.+..+..+++|+.|+++++......| .+..+++|++|++.+|......|..+..+++|+.|++++|.....+|..+ .+
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 34556789999999999875444444 47788999999999987666677888899999999999875444556544 68
Q ss_pred CCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCCh-------hHHHHhhCCC
Q 015457 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-------GSLRKLAGLS 251 (406)
Q Consensus 179 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------~~~~~l~~~~ 251 (406)
++|+.|++++|......+. ...+|+.|++.++.+...+ .. ..+++|+.|.+.++.... ..+.....++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP-~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFP-SN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccccc-cc-ccccccccccccccchhhccccccccchhhhhccc
Confidence 8999999999854333222 2467899999998875432 22 246788888876642211 1111223457
Q ss_pred CCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEecc
Q 015457 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331 (406)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 331 (406)
+|+.|++++|......+..+..+++|+.|++++|......|..+ .+++|++|++++|......+. ..++|+.|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECC
Confidence 89999999987665556678899999999999986544334333 688999999999864433222 24689999999
Q ss_pred CCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCC
Q 015457 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383 (406)
Q Consensus 332 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~ 383 (406)
+| .+.. .+..+..+++|+.|++++|+-....+..+..+++|+.+++++|.
T Consensus 855 ~n-~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RT-GIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CC-CCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 98 5654 56678899999999999987333344455678899999999995
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=2.5e-24 Score=196.18 Aligned_cols=380 Identities=22% Similarity=0.235 Sum_probs=272.6
Q ss_pred cCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCc
Q 015457 6 SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 85 (406)
Q Consensus 6 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 85 (406)
.++-+|++|+++++.. +.-|..+..+++|+.|+++.+. +...+....++.+|+++.+.++.. ...+..+..+.+|
T Consensus 42 ~~~v~L~~l~lsnn~~--~~fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl 116 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQI--SSFPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNL 116 (1081)
T ss_pred hheeeeEEeecccccc--ccCCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhheeccchh--hcCchhHHhhhcc
Confidence 4455699999999874 2335667889999999999876 445567788999999999987532 3356778889999
Q ss_pred cEEEeccCccChhHHHhhhcCC-------------------CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChh
Q 015457 86 KSLQISCSKVTDSGIAYLKGLQ-------------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146 (406)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~-------------------~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 146 (406)
++|++++|.+...+. .+..+. .++.+++..+.+....+..+..+.. .+++..|.+...
T Consensus 117 ~~LdlS~N~f~~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~ 193 (1081)
T KOG0618|consen 117 QYLDLSFNHFGPIPL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL 193 (1081)
T ss_pred cccccchhccCCCch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh
Confidence 999999998764332 121111 2445555555555555555555544 588888776522
Q ss_pred hhhhcc-----------------CCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEE
Q 015457 147 GCEKFS-----------------KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 209 (406)
Q Consensus 147 ~~~~~~-----------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 209 (406)
....+. ..++++.|+..+|.+....+ .....+|++++++.+.+.... ..+..+.+|..++
T Consensus 194 dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 194 DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLP-EWIGACANLEALN 270 (1081)
T ss_pred hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcch-HHHHhcccceEec
Confidence 221111 11456666666666652211 123468999999999886554 8889999999999
Q ss_pred cCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHh-----------------
Q 015457 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT----------------- 272 (406)
Q Consensus 210 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----------------- 272 (406)
..+|.+... +..+....+|+.+.+..|.+.. .+......+.|++|++..|++...+...+.
T Consensus 271 ~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 271 ANHNRLVAL-PLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred ccchhHHhh-HHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc
Confidence 999998543 5566677889999998888766 344456689999999999987764332211
Q ss_pred --------cCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHH
Q 015457 273 --------SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344 (406)
Q Consensus 273 --------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 344 (406)
.++.|+.|.+.+|.+++.....+..+++|+.|++++|.+.......+.+++.|+.|++++| +++.. +..+
T Consensus 349 ~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~L-p~tv 426 (1081)
T KOG0618|consen 349 TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTL-PDTV 426 (1081)
T ss_pred ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhh-hHHH
Confidence 1234666777788888776777788889999999998888776777788888999999998 66654 4777
Q ss_pred HcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCChhhHHHHhhcCCCCccccC
Q 015457 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404 (406)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~ 404 (406)
..++.|+.|...+|.+...+ .+...+.|+.++++.|.++.-.+... ..+|+|+.|.
T Consensus 427 a~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~--~p~p~LkyLd 482 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEA--LPSPNLKYLD 482 (1081)
T ss_pred HhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhh--CCCcccceee
Confidence 78888999988888887644 66788999999999999998666554 3568888765
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.85 E-value=2.1e-19 Score=157.78 Aligned_cols=277 Identities=27% Similarity=0.341 Sum_probs=133.2
Q ss_pred EEeccCccC-hhHHHhhhcCCCCCEEEecCCCCChh----hHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457 88 LQISCSKVT-DSGIAYLKGLQKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162 (406)
Q Consensus 88 L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (406)
|++.++.++ ......+..++.|+.++++++.++.. .+..+...+.++++++.++.+... +
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~-------------- 67 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-P-------------- 67 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-c--------------
Confidence 444444444 22233445555566666666655432 122233344555555555443310 0
Q ss_pred cCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCC---CCCEEEcCCCcCCchhH----HhhcCC-CCCcEEec
Q 015457 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC---NLKCLELSDTQVGSSGL----RHLSGL-TNLESINL 234 (406)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~L~~l~l~~~~~~~~~~----~~l~~~-~~L~~L~l 234 (406)
......+..+..+++|++|+++++.+....+..+..+. +|+.|+++++.+..... ..+..+ ++|+.+++
T Consensus 68 ---~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 68 ---RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred ---hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 00012233344455555555555554432222222222 25555555555442111 222333 56666666
Q ss_pred cCCCCChh----HHHHhhCCCCCcEEECCCCCCChHHH----HHHhcCCCCCEEEccCCCCChhHH----HHhhcCCCCC
Q 015457 235 SFTGISDG----SLRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLR 302 (406)
Q Consensus 235 ~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~ 302 (406)
++|.++.. ....+..+++|++|++++|.+.+... ..+..+++|+.|++++|.+++... ..+..+++|+
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence 66665522 22234445566666666666654322 223344566666666666654332 2234456666
Q ss_pred EEEccCCCCChHHHHhhhc-----CCCCCEEeccCCCCCChh----HHHHHHcCCCccEEEeeCCccChhHH----HhcC
Q 015457 303 SLEICGGGLTDAGVKHIKD-----LSSLTLLNLSQNCNLTDK----TLELISGLTGLVSLNVSNSRITSAGL----RHLK 369 (406)
Q Consensus 303 ~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~ 369 (406)
+|++++|.+.+.....+.. .+.|+.|++++| .+.+. ....+..+++|+.+++++|.+++... ..+.
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~ 303 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL 303 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence 6666666666543333321 256666666666 44422 22333445566666666666664422 2233
Q ss_pred CC-CCccEEEccCCC
Q 015457 370 PL-KNLRSLTLESCK 383 (406)
Q Consensus 370 ~~-~~L~~l~l~~~~ 383 (406)
.. +.|+++++.+++
T Consensus 304 ~~~~~~~~~~~~~~~ 318 (319)
T cd00116 304 EPGNELESLWVKDDS 318 (319)
T ss_pred hcCCchhhcccCCCC
Confidence 33 456666666654
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.84 E-value=1.1e-18 Score=153.19 Aligned_cols=278 Identities=27% Similarity=0.304 Sum_probs=158.0
Q ss_pred EEeecCCCCcCcCccccccCCCCccEEEeccCccChhHH----HhhhcCCCCCEEEecCCCCCh------hhHHHHhcCC
Q 015457 62 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI----AYLKGLQKLTLLNLEGCPVTA------ACLDSLSALG 131 (406)
Q Consensus 62 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~ 131 (406)
.|++..+..-.......+..+++|++|.+.++.+++... ..+...+.++.++++++.+.. ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 355654333223334455677889999999999865433 345677889999999887662 2234455677
Q ss_pred CCcEEEcCCccCChhhhhhccCC---CCccEEEecCCccch----hHHhhhcCC-CCCCeEEccCCCCChhhhHhhhCCC
Q 015457 132 SLFYLNLNRCQLSDDGCEKFSKI---GSLKVLNLGFNEITD----ECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTGLC 203 (406)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~ 203 (406)
+|++++++++.+....+..+..+ ++|+.|++++|.+.. .....+..+ ++|+.+++++|.++......
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~----- 156 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA----- 156 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH-----
Confidence 88888887777654333333333 236666666665542 112223333 55555555555544211111
Q ss_pred CCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhH----HHHhhCCCCCcEEECCCCCCChHHH----HHHhcCC
Q 015457 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGL----AALTSLT 275 (406)
Q Consensus 204 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~ 275 (406)
....+..+++|+.|++++|.+++.. ...+...++|+.|++++|.+++... ..+..++
T Consensus 157 ---------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 157 ---------------LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred ---------------HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 1122334455666666655555322 1223344566666666666654332 2334566
Q ss_pred CCCEEEccCCCCChhHHHHhh-c----CCCCCEEEccCCCCChHHH----HhhhcCCCCCEEeccCCCCCChhHH----H
Q 015457 276 GLTHLDLFGARITDSGAAYLR-N----FKNLRSLEICGGGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDKTL----E 342 (406)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~~-~----~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~ 342 (406)
+|++|++++|.+++.....+. . .+.|++|++++|.+++... ..+..+++|+.+++++| .+..... .
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~ 300 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAE 300 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHH
Confidence 677777777776653333322 1 3677777777777763322 23445677888888888 6665533 3
Q ss_pred HHHcC-CCccEEEeeCCcc
Q 015457 343 LISGL-TGLVSLNVSNSRI 360 (406)
Q Consensus 343 ~l~~~-~~L~~L~l~~~~~ 360 (406)
.+... +.++.+++.++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 301 SLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhhcCCchhhcccCCCCC
Confidence 33344 6788888877753
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=4.9e-21 Score=158.89 Aligned_cols=132 Identities=23% Similarity=0.251 Sum_probs=95.0
Q ss_pred CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCC-ccCChhhhhhccCCCCccEEE
Q 015457 83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLN 161 (406)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~ 161 (406)
+.-+.+.+..|.|+..++..|+.+++|+.|++++|.++.+.|+.|.++.++..+.+.+ |++++...+.|..+..++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4556677777877777777788888888888888888777788888777777666655 777776667777777777777
Q ss_pred ecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCc
Q 015457 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214 (406)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 214 (406)
+..+.+.....+.+..++++..|.+.+|.+.......+..+..++.+.+..+.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 77777776667777777777777777776654444455556666666655544
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.75 E-value=6.8e-20 Score=152.17 Aligned_cols=276 Identities=22% Similarity=0.245 Sum_probs=184.2
Q ss_pred CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecC-CccchhHHhhhcCCCCCCeEEc
Q 015457 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 186 (406)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l 186 (406)
.-..|++..|.++...+..|..+++|+.++++.|.+..+.++.|..++++-.|-+.+ |.++......|..+..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 455678888888888777888888888888888888888888888887777766655 6777555566777777777777
Q ss_pred cCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCC-h-----------hHHHHhhCCCCCc
Q 015457 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-D-----------GSLRKLAGLSSLK 254 (406)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~-----------~~~~~l~~~~~L~ 254 (406)
.-+++.......+..++++..|.+.++.+.......+..+..++.+.+..+.+. + ..+.+++.+.-..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 777776666777777888888888777765554445555666666655444311 0 0111111111111
Q ss_pred EEECCCCCCChHHHHHHhcCCCCCEE--Ec-cCC-CCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEec
Q 015457 255 SLNLDARQITDTGLAALTSLTGLTHL--DL-FGA-RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330 (406)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~~~~L~~L--~l-~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 330 (406)
...+....+.......+.. .++.+ .+ +.+ .....+...|..+++|++|++++|.++.....+|.....++.|.+
T Consensus 228 p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred hHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 1111111111111111110 01111 11 122 222334556788899999999999888888888888888999999
Q ss_pred cCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457 331 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 331 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 386 (406)
..| ++.......+.++..|+.|++.+|+|+-..+.+|....+|.+|++-.|++..
T Consensus 306 ~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 306 TRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred Ccc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 888 7777777888888889999999999888888888888889999988888665
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=3.3e-16 Score=147.14 Aligned_cols=242 Identities=21% Similarity=0.120 Sum_probs=105.8
Q ss_pred CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEcc
Q 015457 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187 (406)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 187 (406)
+|+.|++.+|.++.. |. ..++|++|++++|.+... +. ..++|+.|++++|.+. .+|.. .++|+.|++.
T Consensus 223 ~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcc-cC---cccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence 455555555544442 21 234555555555544432 11 1234555555555443 22221 1344555555
Q ss_pred CCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHH
Q 015457 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267 (406)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 267 (406)
+|.+..... ..++|+.|++++|.+..... ...+|+.|++++|.++.. +. ..++|+.|++++|.++..+
T Consensus 291 ~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~L-P~---lp~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 291 GNQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL-PT---LPSGLQELSVSDNQLASLP 358 (788)
T ss_pred CCccccccc----cccccceeECCCCccccCCC----CcccccccccccCccccc-cc---cccccceEecCCCccCCCC
Confidence 554432211 12445555555554443211 112344555555544431 10 1134555555555555432
Q ss_pred HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC
Q 015457 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347 (406)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 347 (406)
. ..++|+.|++++|.+...+ . ...+|+.|++++|.+... +. ..++|+.|++++| .+...+ .. .
T Consensus 359 ~----lp~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt~L-P~---l~s~L~~LdLS~N-~LssIP-~l---~ 421 (788)
T PRK15387 359 T----LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSL-PV---LPSELKELMVSGN-RLTSLP-ML---P 421 (788)
T ss_pred C----CCcccceehhhccccccCc-c---cccccceEEecCCcccCC-CC---cccCCCEEEccCC-cCCCCC-cc---h
Confidence 1 1234555555555554321 1 123455555555555432 11 1245555555555 333321 11 1
Q ss_pred CCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCChhhHHH
Q 015457 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391 (406)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~ 391 (406)
.+|+.|++++|+++. .+..+..+++|+.+++++|+++......
T Consensus 422 ~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 422 SGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred hhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHH
Confidence 244555555555553 2333445555555566665555544433
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=4.5e-16 Score=146.28 Aligned_cols=243 Identities=20% Similarity=0.123 Sum_probs=129.1
Q ss_pred CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457 84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163 (406)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (406)
+|+.|.+.+|.++..+. ..++|++|++++|.++.. |. ..++|+.|++.+|.+... +. ..++|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls~N~L~~L-p~---lp~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcc-cC---cccccceeeccCCchhhh-hh---chhhcCEEECc
Confidence 55666666555553221 235566666666655543 21 134566666666555432 11 12345566666
Q ss_pred CCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhH
Q 015457 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243 (406)
Q Consensus 164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 243 (406)
+|.+. .+|. .+++|+.|++++|.+..... ....|+.|++.+|.+...+ . ...+|+.|++++|.++...
T Consensus 291 ~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~LP-~---lp~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 291 GNQLT-SLPV---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP-T---LPSGLQELSVSDNQLASLP 358 (788)
T ss_pred CCccc-cccc---cccccceeECCCCccccCCC----CcccccccccccCcccccc-c---cccccceEecCCCccCCCC
Confidence 66555 2232 23456666666665543211 1234555666666554321 1 1135666666666665421
Q ss_pred HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCC
Q 015457 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323 (406)
Q Consensus 244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 323 (406)
. ..++|+.|++++|.+...+. ...+|+.|++++|.++..+. ..++|+.|++++|.+... +.. +.
T Consensus 359 -~---lp~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~LssI-P~l---~~ 422 (788)
T PRK15387 359 -T---LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSL-PML---PS 422 (788)
T ss_pred -C---CCcccceehhhccccccCcc----cccccceEEecCCcccCCCC----cccCCCEEEccCCcCCCC-Ccc---hh
Confidence 1 13456666666666664321 12456777777776664221 135677777777776653 221 23
Q ss_pred CCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhc
Q 015457 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368 (406)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 368 (406)
+|+.|++++| .+.. .+..+..+++|+.|++++|++++..+..+
T Consensus 423 ~L~~L~Ls~N-qLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 423 GLLSLSVYRN-QLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhccC-cccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 5666777776 4553 45556677777777777777776555544
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.60 E-value=1.4e-14 Score=119.06 Aligned_cols=192 Identities=23% Similarity=0.304 Sum_probs=123.5
Q ss_pred CCCCCCEEEcCCCcCCchhHHh----hcCCCCCcEEeccCCCCChhHHHH-------------hhCCCCCcEEECCCCCC
Q 015457 201 GLCNLKCLELSDTQVGSSGLRH----LSGLTNLESINLSFTGISDGSLRK-------------LAGLSSLKSLNLDARQI 263 (406)
Q Consensus 201 ~~~~L~~l~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~ 263 (406)
.++.|+.+++++|.++...+.. +..+..|++|.+.+|++....... .+..+.|+.+.+..|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3445555555555554433322 234555666666555554332222 23457788888888777
Q ss_pred ChHHH----HHHhcCCCCCEEEccCCCCChhH----HHHhhcCCCCCEEEccCCCCChHHHH----hhhcCCCCCEEecc
Q 015457 264 TDTGL----AALTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVK----HIKDLSSLTLLNLS 331 (406)
Q Consensus 264 ~~~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~ 331 (406)
...+. ..+...+.|+.+.+..|.+...+ ...+.++++|+.|++.+|.++..+.. .++.+|+|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 65433 34556678888888888776433 34467788888888888887765543 34567888999999
Q ss_pred CCCCCChhHHHHHH-----cCCCccEEEeeCCccChhHHHh----cCCCCCccEEEccCCCC--ChhhHHHHh
Q 015457 332 QNCNLTDKTLELIS-----GLTGLVSLNVSNSRITSAGLRH----LKPLKNLRSLTLESCKV--TANDIKRLQ 393 (406)
Q Consensus 332 ~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~l~l~~~~~--~~~~~~~~~ 393 (406)
+| .+.......+. ..|+|+++.+.+|.++...... +...|.|+.|++++|++ ....+..+.
T Consensus 250 dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~ 321 (382)
T KOG1909|consen 250 DC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIA 321 (382)
T ss_pred cc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHH
Confidence 98 77765544332 4688999999999887544433 34578899999999998 444455443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=6.1e-15 Score=139.50 Aligned_cols=254 Identities=19% Similarity=0.192 Sum_probs=158.6
Q ss_pred CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEcc
Q 015457 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187 (406)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 187 (406)
+...|++++..++.. |..+ .++++.|++++|.+... +..+. ++|+.|++++|.+. .+|..+. ++|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsL-P~~I--p~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACI--PEQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcC-Cccc--ccCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 456777777766654 4333 24677888888777643 33222 47888888887776 3344332 467888888
Q ss_pred CCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHH
Q 015457 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267 (406)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 267 (406)
+|.+... +..+ ..+|+.|++++|.+... +..+ +++|+.|++++|.++.. +..+ .++|+.|++++|.++..+
T Consensus 250 ~N~L~~L-P~~l--~s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 250 INRITEL-PERL--PSALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTALP 320 (754)
T ss_pred CCccCcC-ChhH--hCCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccccC-cccc--hhhHHHHHhcCCccccCC
Confidence 8776533 2222 24678888887776643 2222 25788888888877653 2212 246777788887777543
Q ss_pred HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC
Q 015457 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347 (406)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 347 (406)
.. + .++|+.|++++|.++..+ ..+ +++|+.|++++|.+... +..+ .++|+.|++++| .+...+. .+.
T Consensus 321 ~~-l--~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N-~Lt~LP~-~l~-- 387 (754)
T PRK15370 321 ET-L--PPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRN-ALTNLPE-NLP-- 387 (754)
T ss_pred cc-c--cccceeccccCCccccCC-hhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCC-cCCCCCH-hHH--
Confidence 21 1 257888888888776532 222 36788888888877654 3333 367888888888 5654332 332
Q ss_pred CCccEEEeeCCccChhH---HHhcCCCCCccEEEccCCCCChhhHHHH
Q 015457 348 TGLVSLNVSNSRITSAG---LRHLKPLKNLRSLTLESCKVTANDIKRL 392 (406)
Q Consensus 348 ~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~l~l~~~~~~~~~~~~~ 392 (406)
..|+.|++++|++...+ +......+++..+++.+|+++...+..+
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHH
Confidence 35778888888876432 2223445778888888888887666654
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=9.1e-15 Score=138.31 Aligned_cols=251 Identities=22% Similarity=0.245 Sum_probs=137.8
Q ss_pred CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457 84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163 (406)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (406)
+...|.+++..++..+ ..+ .+.++.|++++|.+... |..+. ++|++|++++|.+... +..+. ++|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsLP-~~I--p~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIP-ACI--PEQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLTSI-PATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCC-ccc--ccCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccccC-Chhhh--ccccEEECc
Confidence 4455666655554322 112 13566666666666653 33222 4666777766665532 22221 356667777
Q ss_pred CCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhH
Q 015457 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243 (406)
Q Consensus 164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 243 (406)
+|.+. .+|..+. .+|+.|++++|.+... +..+ .++|+.|++++|.+..... .+ .++|+.|++++|.++..
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~LP~-~l--p~sL~~L~Ls~N~Lt~L- 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRTLPA-HL--PSGITHLNVQSNSLTAL- 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccccCcc-cc--hhhHHHHHhcCCccccC-
Confidence 66665 3343332 3567777776665432 2222 2367777777766554321 11 13566677777766542
Q ss_pred HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCC
Q 015457 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323 (406)
Q Consensus 244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 323 (406)
+..+ .++|+.|.+++|.++..+ ..+ .++|+.|++++|.++.. +..+ .++|+.|++++|.+... +..+. +
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~L-P~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNL-PENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCccccCC-hhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCC-CHhHH--H
Confidence 1111 256777777777766543 222 25777777777777643 2222 35777777777777654 33332 3
Q ss_pred CCCEEeccCCCCCChh---HHHHHHcCCCccEEEeeCCccChhHH
Q 015457 324 SLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVSNSRITSAGL 365 (406)
Q Consensus 324 ~L~~L~l~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~ 365 (406)
.|+.|++++| .+... .+.....++++..+++.+|++.....
T Consensus 389 sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl 432 (754)
T PRK15370 389 ALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTI 432 (754)
T ss_pred HHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCccHHHH
Confidence 5777777777 44432 22233345677778888887765333
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.49 E-value=4.9e-13 Score=110.21 Aligned_cols=133 Identities=23% Similarity=0.304 Sum_probs=62.7
Q ss_pred CCCcEEeccCCCCChhHH----HHhhCCCCCcEEECCCCCCChHH----HHHHhcCCCCCEEEccCCCCChhHHH----H
Q 015457 227 TNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDLFGARITDSGAA----Y 294 (406)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~----~ 294 (406)
+.|+.+....|.+.+... ..+...+.|+.++++.|.+...+ ...+..+++|+.|++.+|.++..+.. .
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 445555555444333211 22233455555555555443322 13344555555555555555543322 2
Q ss_pred hhcCCCCCEEEccCCCCChHHHHhhh-----cCCCCCEEeccCCCCCChhHHH----HHHcCCCccEEEeeCCcc
Q 015457 295 LRNFKNLRSLEICGGGLTDAGVKHIK-----DLSSLTLLNLSQNCNLTDKTLE----LISGLTGLVSLNVSNSRI 360 (406)
Q Consensus 295 ~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~ 360 (406)
+..+++|+.|++.+|.+...+...+. ..|+|+.+.+.+| .++..... .+...|.|+.|++++|.+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 33445555555555555544443331 2456666666665 33332221 122345566666666665
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=4.1e-15 Score=109.86 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=93.7
Q ss_pred cCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCE
Q 015457 32 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 111 (406)
Q Consensus 32 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 111 (406)
.+.++.+|.++++.. ...++.++.+.+|+.|++.+++. + ..+..++.+++|+.|++.-|.+. ..+..|+.+|.|++
T Consensus 31 ~~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnqi-e-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQI-E-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCce-eecCCcHHHhhhhhhhhcccchh-h-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 345566666666653 33444566666777777665432 2 24455666677777766655544 34455666677777
Q ss_pred EEecCCCCCh-hhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCC
Q 015457 112 LNLEGCPVTA-ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190 (406)
Q Consensus 112 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 190 (406)
|+++++.+.. ..|+.|..+..|+.|++.+|.+. ..|..++++++|+.|.+..|.+. ..|..++.+..|+.|.+.+|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 7776665543 34555666666666666666654 34555666666666666666655 455556666666666666666
Q ss_pred CCh
Q 015457 191 IGD 193 (406)
Q Consensus 191 ~~~ 193 (406)
++.
T Consensus 185 l~v 187 (264)
T KOG0617|consen 185 LTV 187 (264)
T ss_pred eee
Confidence 543
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=6.5e-15 Score=108.83 Aligned_cols=156 Identities=24% Similarity=0.279 Sum_probs=85.8
Q ss_pred CCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEE
Q 015457 81 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160 (406)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (406)
.+.+++.|.+++|+++. .+..++.+.+|+.|++.++.+... |..++.+++|+.|++.-|++. ..|..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhhhc-Chhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 44555666666666653 334456666666666666666554 555666666666666665543 345566666666666
Q ss_pred EecCCccch-hHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCC
Q 015457 161 NLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239 (406)
Q Consensus 161 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 239 (406)
++.+|++.+ ..|..|-.+..|+.|.+++|.+. ..+..++++.+|+.|.+.++.+-. .+..++.+..|+.|.+.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhccccee
Confidence 666665543 23333444455555555555442 334445555555555555555432 234444445555555555544
Q ss_pred Ch
Q 015457 240 SD 241 (406)
Q Consensus 240 ~~ 241 (406)
+.
T Consensus 186 ~v 187 (264)
T KOG0617|consen 186 TV 187 (264)
T ss_pred ee
Confidence 43
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.32 E-value=3.7e-12 Score=107.58 Aligned_cols=301 Identities=27% Similarity=0.402 Sum_probs=140.3
Q ss_pred CccEEeecCCCCcCcCcccccc-CCCCccEEEeccCc-cChhHHHhh-hcCCCCCEEEecCC-CCChhhHHH-HhcCCCC
Q 015457 59 KLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSK-VTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDS-LSALGSL 133 (406)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~-~~~~~~~~~-~~~l~~L 133 (406)
.|+.|.+++|..+.......+. +||++++|.+.++. +++.....+ ..+++|+++++..| .++...... ..++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4566666666555544444443 56666666666543 343332222 45566666666664 334333332 2345666
Q ss_pred cEEEcCCcc-CChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCC-CChhhhHh-hhCCCCCCEEEc
Q 015457 134 FYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVN-LTGLCNLKCLEL 210 (406)
Q Consensus 134 ~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~-~~~~~~L~~l~l 210 (406)
+++++++|. +.+..... ..+.+..++.+...||. ........ -..+..+..+++
T Consensus 219 ~~lNlSwc~qi~~~gv~~-----------------------~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQA-----------------------LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL 275 (483)
T ss_pred HHhhhccCchhhcCcchH-----------------------HhccchhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence 666666553 11111100 11223334444444431 11111110 111223333333
Q ss_pred CCCc-CCchh-HHhhcCCCCCcEEeccCC-CCChhHHHHhh-CCCCCcEEECCCCC-CChHHHHHHh-cCCCCCEEEccC
Q 015457 211 SDTQ-VGSSG-LRHLSGLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQ-ITDTGLAALT-SLTGLTHLDLFG 284 (406)
Q Consensus 211 ~~~~-~~~~~-~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~-~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~ 284 (406)
..+. ++... ...-..+..|+.+..+++ .+++.....++ ++++|+.+-+.+|+ ++......++ +++.|+.+++.+
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 3332 11111 111123455555555544 33443333333 35666666666553 3333333332 455666666666
Q ss_pred CCCChhH--HHHhhcCCCCCEEEccCCC-CChHHHHhhh----cCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeC
Q 015457 285 ARITDSG--AAYLRNFKNLRSLEICGGG-LTDAGVKHIK----DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357 (406)
Q Consensus 285 ~~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 357 (406)
+...... ...-..++.|+.+.++.|. +++.+...+. ....|..+.+++|+.+.+...+-+..+++|+.+++-+
T Consensus 356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 5543222 1112345666666666553 3333222222 2356666666777666666666666666777766666
Q ss_pred Cc-cChhHHHhc-CCCCCccEEEccCC
Q 015457 358 SR-ITSAGLRHL-KPLKNLRSLTLESC 382 (406)
Q Consensus 358 ~~-~~~~~~~~l-~~~~~L~~l~l~~~ 382 (406)
|+ +++.....+ ..+|++++..+.+-
T Consensus 436 ~q~vtk~~i~~~~~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 436 CQDVTKEAISRFATHLPNIKVHAYFAP 462 (483)
T ss_pred hhhhhhhhhHHHHhhCccceehhhccC
Confidence 65 444444444 35666665555443
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3e-12 Score=103.37 Aligned_cols=179 Identities=23% Similarity=0.258 Sum_probs=88.6
Q ss_pred CCEEEcCCCcCCchh-HHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCC-CCChHHH-HHHhcCCCCCEEE
Q 015457 205 LKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGL-AALTSLTGLTHLD 281 (406)
Q Consensus 205 L~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~~L~~L~ 281 (406)
|++++++...++... ...+..|..|+.|.+.+..+.+.....++...+|+.++++.+ .++.... ..+.+|+.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 444555444443322 122344455555555555555554455555555555555543 3333322 2234555555555
Q ss_pred ccCCCCChhHHHH-hh-cCCCCCEEEccCCC--CChHHHH-hhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEee
Q 015457 282 LFGARITDSGAAY-LR-NFKNLRSLEICGGG--LTDAGVK-HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356 (406)
Q Consensus 282 l~~~~~~~~~~~~-~~-~~~~L~~L~l~~~~--~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 356 (406)
+++|......... +. --++|+.|+++|+. +...... ....||+|..|++++|..++......+-+|+.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 5555544322111 11 12455555555542 2111122 224566666666666655665555566666666666666
Q ss_pred CCc-cChhHHHhcCCCCCccEEEccCCC
Q 015457 357 NSR-ITSAGLRHLKPLKNLRSLTLESCK 383 (406)
Q Consensus 357 ~~~-~~~~~~~~l~~~~~L~~l~l~~~~ 383 (406)
.|. +.....-.+...|+|.+|++.||-
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEecccc
Confidence 665 222233344566677777776664
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.6e-12 Score=110.30 Aligned_cols=211 Identities=25% Similarity=0.277 Sum_probs=125.4
Q ss_pred cCCCCCCeEEccCCCCChhhh-HhhhCCCCCCEEEcCCCcCCchh--HHhhcCCCCCcEEeccCCCCChhHHHHh-hCCC
Q 015457 176 KGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKL-AGLS 251 (406)
Q Consensus 176 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~ 251 (406)
+++.+|+.+.+.++.....+. .....+++++.|+++.|-+.... ......+|+|+.|+++.|.+........ ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 355677777777775543322 34456778888888877654432 3444567888888887775543211111 1456
Q ss_pred CCcEEECCCCCCChHHH-HHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHH-HHhhhcCCCCCEEe
Q 015457 252 SLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLN 329 (406)
Q Consensus 252 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 329 (406)
.|+.|.+++|.++.... ..+..+|+|+.|.+.+|...........-+..|++|+|++|.+-+.. ....+.+|.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 77778888887775432 34456777888888777422111122233566777888777655432 23345677777777
Q ss_pred ccCCCCCChhH-H-----HHHHcCCCccEEEeeCCccChhH-HHhcCCCCCccEEEccCCCCChh
Q 015457 330 LSQNCNLTDKT-L-----ELISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVTAN 387 (406)
Q Consensus 330 l~~~~~~~~~~-~-----~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~l~l~~~~~~~~ 387 (406)
++.| .+.... + .....+++|+.|++..|++.+.. ...+...++|+.+.+..+.+..+
T Consensus 278 ls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 7777 343322 1 11235677888888877765422 24445566777777777766653
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.21 E-value=1.3e-11 Score=104.28 Aligned_cols=302 Identities=24% Similarity=0.299 Sum_probs=176.4
Q ss_pred CCCcEeeccCcccccCcc--ccccCCCCccEEeecCCCCcCcCcccccc-CCCCccEEEecc-CccChhHHHh-hhcCCC
Q 015457 34 INLVKLDLERCTRIHGGL--VNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISC-SKVTDSGIAY-LKGLQK 108 (406)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~-~~~l~~ 108 (406)
..||.|.++||..+...+ .....||++++|++.+|..+++.....++ .|++|++|++.. ..+++....+ ...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 468899999887544332 22457899999999999888877666665 789999999987 4566666553 467899
Q ss_pred CCEEEecCCC-CChhhH-HHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEc
Q 015457 109 LTLLNLEGCP-VTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186 (406)
Q Consensus 109 L~~L~l~~~~-~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 186 (406)
|++|+++.+. +.+... ....++..++.+...+|.-.. .+.+. ..-...+-+.++++
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~--------------------~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALL--------------------KAAAYCLEILKLNL 275 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHH--------------------HHhccChHhhccch
Confidence 9999998873 222111 122334445555444443111 11110 00011222333333
Q ss_pred cCC-CCChhhhHhh-hCCCCCCEEEcCCCcCCc-hhHHhh-cCCCCCcEEeccCC-CCChhHHHHhh-CCCCCcEEECCC
Q 015457 187 DSC-GIGDEGLVNL-TGLCNLKCLELSDTQVGS-SGLRHL-SGLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDA 260 (406)
Q Consensus 187 ~~~-~~~~~~~~~~-~~~~~L~~l~l~~~~~~~-~~~~~l-~~~~~L~~L~l~~~-~~~~~~~~~l~-~~~~L~~L~l~~ 260 (406)
..| .+++.....+ ..+..|+.++.+++.... .....+ ..+++|+.+.+..+ .+++.....++ +++.|+.+++.+
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 333 2222221111 234456666665544322 112222 35677777777766 35555555555 467777777777
Q ss_pred CCCChHH-H-HHHhcCCCCCEEEccCCCCC-hhHHHHh----hcCCCCCEEEccCCC-CChHHHHhhhcCCCCCEEeccC
Q 015457 261 RQITDTG-L-AALTSLTGLTHLDLFGARIT-DSGAAYL----RNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQ 332 (406)
Q Consensus 261 ~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~-~~~~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~ 332 (406)
+...... . ..-.+++.|+.+.++.|... +.+...+ ..+..|+.+.++++. +++...+.+..|++|+.+++-+
T Consensus 356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 6544322 1 22236778888888877543 3322222 345778888888886 4455566777888999999988
Q ss_pred CCCCChhHHHHHH-cCCCccEEEeeC
Q 015457 333 NCNLTDKTLELIS-GLTGLVSLNVSN 357 (406)
Q Consensus 333 ~~~~~~~~~~~l~-~~~~L~~L~l~~ 357 (406)
|..+.......+. ++|+++..-+-.
T Consensus 436 ~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 436 CQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred hhhhhhhhhHHHHhhCccceehhhcc
Confidence 8777766655554 678776655544
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.7e-11 Score=99.11 Aligned_cols=197 Identities=24% Similarity=0.285 Sum_probs=136.4
Q ss_pred CCCCeEEccCCCCChhhh-HhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCC-CCChhHH-HHhhCCCCCcE
Q 015457 179 TNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSL-RKLAGLSSLKS 255 (406)
Q Consensus 179 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~-~~l~~~~~L~~ 255 (406)
..+++++++...++.... ..++.+.+|+.+.+.+..+.+.....+++-.+|+.++++.+ ++++... -.+.+++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 457888888777765433 35567888888888888888777777888888999988876 5665443 34567889999
Q ss_pred EECCCCCCChHHH-HHHh-cCCCCCEEEccCCCCC---hhHHHHhhcCCCCCEEEccCCC-CChHHHHhhhcCCCCCEEe
Q 015457 256 LNLDARQITDTGL-AALT-SLTGLTHLDLFGARIT---DSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLN 329 (406)
Q Consensus 256 L~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 329 (406)
|+++.|.+..... ..+. --++|+.|+++|+.-. .........+|+|.+|++++|. +.......|.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 9999887665322 1111 2267888999887532 1223334679999999999874 5555566778899999999
Q ss_pred ccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhc-CCCCCccE
Q 015457 330 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRS 376 (406)
Q Consensus 330 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~ 376 (406)
++.|..+.....-.+...|+|.+|++-||--.. ..+.+ ..+++|+.
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt-~mel~~e~~~~lki 391 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT-TMELLKEMLSHLKI 391 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccccCch-HHHHHHHhCccccc
Confidence 999955555444456678999999999885322 23333 34566654
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4e-12 Score=107.96 Aligned_cols=230 Identities=20% Similarity=0.200 Sum_probs=158.2
Q ss_pred CCCCccEEEecCCccchhHH-hhhcCCCCCCeEEccCCCCChh--hhHhhhCCCCCCEEEcCCCcCCchhHH-hhcCCCC
Q 015457 153 KIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLTN 228 (406)
Q Consensus 153 ~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~-~l~~~~~ 228 (406)
++++|+...+.++.+..... .....+++++.|+++.|-+... .......+|+|+.|+++.|.+...... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 56788999998887653221 3556889999999999865443 233456799999999999886543221 1235689
Q ss_pred CcEEeccCCCCChhHH-HHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhH-HHHhhcCCCCCEEEc
Q 015457 229 LESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEI 306 (406)
Q Consensus 229 L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 306 (406)
++.|.++.|+++.... ..+..+|+|+.|.+.+|...........-+..|+.|++++|.+.+.. ....+.++.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 9999999999986433 33457899999999998522211222234467999999999876532 344678999999999
Q ss_pred cCCCCChHHHHhh------hcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHH----HhcCCCCCccE
Q 015457 307 CGGGLTDAGVKHI------KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL----RHLKPLKNLRS 376 (406)
Q Consensus 307 ~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~ 376 (406)
+.|.+........ ..+|+|++|++..|....+.....+..+++|+.|.+..+.++...- ..++..+.|..
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~ 358 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVK 358 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhhhhh
Confidence 9998876432222 3479999999999954445556666778899999999988764322 12344555555
Q ss_pred EEccCC
Q 015457 377 LTLESC 382 (406)
Q Consensus 377 l~l~~~ 382 (406)
|+=.++
T Consensus 359 LN~~di 364 (505)
T KOG3207|consen 359 LNDVDI 364 (505)
T ss_pred hccccc
Confidence 444443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=2.6e-11 Score=93.68 Aligned_cols=130 Identities=27% Similarity=0.344 Sum_probs=48.1
Q ss_pred CCCCCcEEECCCCCCChHHHHHHh-cCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCE
Q 015457 249 GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327 (406)
Q Consensus 249 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 327 (406)
++.++++|++.++.++.. ..+. .+.+|+.|++++|.++.. ..+..+++|++|++++|.++.........+|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 455678888888888774 3343 467788888888888753 23556788888888888887653322245788888
Q ss_pred EeccCCCCCCh-hHHHHHHcCCCccEEEeeCCccChhH---HHhcCCCCCccEEEccCCC
Q 015457 328 LNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAG---LRHLKPLKNLRSLTLESCK 383 (406)
Q Consensus 328 L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~l~l~~~~ 383 (406)
|++++| .+.. .....++.+++|+.|++.+|++.+.. ...+..+|+|+.||-....
T Consensus 93 L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 93 LYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred EECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 888888 4443 23355667788888888888876422 2334567888877665543
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.14 E-value=2.1e-11 Score=117.63 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=60.1
Q ss_pred CCCccEEEeccCc--cChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccE
Q 015457 82 LTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 159 (406)
Q Consensus 82 ~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (406)
+++|+.|-+..+. +.......|..+|.|++|++++|.-....|..++.+-+|++|+++++.+. ..|..+.++..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 4456666665553 33333444566666666666665444445666666666666666666655 34555666666666
Q ss_pred EEecCCccchhHHhhhcCCCCCCeEEccCC
Q 015457 160 LNLGFNEITDECLVHLKGLTNLESLNLDSC 189 (406)
Q Consensus 160 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 189 (406)
|++..+......+.....+++|++|.+...
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eccccccccccccchhhhcccccEEEeecc
Confidence 666655433233333344666666666543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=4.8e-11 Score=92.20 Aligned_cols=130 Identities=28% Similarity=0.338 Sum_probs=45.7
Q ss_pred CCCCCcEEeccCCCCChhHHHHhh-CCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCE
Q 015457 225 GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303 (406)
Q Consensus 225 ~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 303 (406)
++..++.|+++++.++.. +.++ .+.+|+.|++++|.++.. ..+..++.|+.|++++|.++.........+|+|++
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 445677777877777652 3344 467778888888877763 45566777888888888777653333345777888
Q ss_pred EEccCCCCChHH-HHhhhcCCCCCEEeccCCCCCCh--hHHHHHHcCCCccEEEeeCC
Q 015457 304 LEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTD--KTLELISGLTGLVSLNVSNS 358 (406)
Q Consensus 304 L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~ 358 (406)
|++++|.+.+.. ...+..+|+|+.|++.+|+.... .-...+..+|+|+.||-...
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 888877765532 23456677888888887753222 12344556777777776544
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=1e-10 Score=113.00 Aligned_cols=181 Identities=24% Similarity=0.250 Sum_probs=97.7
Q ss_pred cCCCCcEeeccCcc--cccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCC
Q 015457 32 GLINLVKLDLERCT--RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 109 (406)
Q Consensus 32 ~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 109 (406)
.++.|++|-+..+. ........|..+|.|++||+++|.... ..|..++.+-+||+|+++++.+. ..|..+.+++.|
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 44567777776654 222223336667777777777654433 34566777777777777777776 455667777777
Q ss_pred CEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCC--hhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCC----e
Q 015457 110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE----S 183 (406)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~ 183 (406)
.+|++..+......+.....+++|++|.+...... ......+..+.+|+.+....... .....+..+..|. .
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS 698 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence 77777766443333555556777777777654311 11223344556666665544332 1111112222222 2
Q ss_pred EEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCc
Q 015457 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217 (406)
Q Consensus 184 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 217 (406)
+.+.++.. ......+..+.+|+.|.+.++....
T Consensus 699 l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 699 LSIEGCSK-RTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hhhccccc-ceeecccccccCcceEEEEcCCCch
Confidence 22222211 1223344556677777777766543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1.7e-10 Score=93.62 Aligned_cols=128 Identities=27% Similarity=0.368 Sum_probs=65.8
Q ss_pred CCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEec
Q 015457 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 330 (406)
Q Consensus 251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 330 (406)
+.|+++++++|.++... ....-.|.++.|++++|.+..... ++.+++|+.|++++|.++.. ..+-.++-+.++|.+
T Consensus 284 q~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhh-hhhHhhhcCEeeeeh
Confidence 44555666666555542 233334556666666666554322 45556666666666555443 222234455666666
Q ss_pred cCCCCCChhHHHHHHcCCCccEEEeeCCccChhH-HHhcCCCCCccEEEccCCCCC
Q 015457 331 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVT 385 (406)
Q Consensus 331 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~l~l~~~~~~ 385 (406)
++| .+. ....+.++=+|..||+++|+|...- .+.++++|.|+.+.+.+|++.
T Consensus 360 a~N-~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQN-KIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhh-hHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 655 222 2233444555666666666654322 234455666666666666544
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.98 E-value=3.9e-09 Score=84.59 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=24.7
Q ss_pred hhcCCCCCCeEEccCCCCChhhhH----hhhCCCCCCEEEcCCCcCCch
Q 015457 174 HLKGLTNLESLNLDSCGIGDEGLV----NLTGLCNLKCLELSDTQVGSS 218 (406)
Q Consensus 174 ~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~ 218 (406)
++..+|+|+.+++++|.+....+. .++....|.+|.+.+|.++..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 345566666666666655433222 234445666666666665543
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=2e-10 Score=93.24 Aligned_cols=59 Identities=12% Similarity=0.001 Sum_probs=34.8
Q ss_pred CCCCceeeccCCcc-------CCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecC
Q 015457 8 LSNLTSLSFRRNNA-------ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67 (406)
Q Consensus 8 ~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 67 (406)
|.+|.+|.+++... .....+..+.-|++|+.+.++.|.-- ........-|.|+++....
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHN 246 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeec
Confidence 56777888776532 11222334567889999999988621 1111122346777777764
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.84 E-value=1.3e-07 Score=76.16 Aligned_cols=90 Identities=21% Similarity=0.300 Sum_probs=49.1
Q ss_pred cCCCCCCeEEccCCCCChhhhHhhh----CCCCCCEEEcCCCcCCc----------hhHHhhcCCCCCcEEeccCCCCCh
Q 015457 176 KGLTNLESLNLDSCGIGDEGLVNLT----GLCNLKCLELSDTQVGS----------SGLRHLSGLTNLESINLSFTGISD 241 (406)
Q Consensus 176 ~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~l~l~~~~~~~----------~~~~~l~~~~~L~~L~l~~~~~~~ 241 (406)
..+..+..+++++|.+.......++ +-.+|+...+++-..+. ...+.+.+||+|+.+++++|-+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3466777778888777655444433 33456666555432221 112344566777777776665543
Q ss_pred hHH----HHhhCCCCCcEEECCCCCCCh
Q 015457 242 GSL----RKLAGLSSLKSLNLDARQITD 265 (406)
Q Consensus 242 ~~~----~~l~~~~~L~~L~l~~~~~~~ 265 (406)
..+ ..++....|.+|.+.+|.+..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 322 233455666666666665543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=1.8e-09 Score=68.53 Aligned_cols=61 Identities=34% Similarity=0.438 Sum_probs=41.3
Q ss_pred CCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCC
Q 015457 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384 (406)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~ 384 (406)
|+|++|++++| .+.......+.++++|++|++++|.+....+..|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45666666666 56666556666667777777777777666666667777777777777654
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=1.7e-08 Score=82.06 Aligned_cols=204 Identities=24% Similarity=0.245 Sum_probs=124.1
Q ss_pred CCCCCCeEEccCCCCChhh--hHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHH-HHhhCCCCC
Q 015457 177 GLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSL 253 (406)
Q Consensus 177 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L 253 (406)
..+.++.+++.+|.+++.. ...+.++|.|+.|+++.|.+.......-....+|+.+.+.+..+.-... ..+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3456666666666665432 2334566777777777766654321111234577777777776654332 334567788
Q ss_pred cEEECCCCCCChHHH--HHHh-cCCCCCEEEccCCCCCh--hHHHHhhcCCCCCEEEccCCCCChHHH-HhhhcCCCCCE
Q 015457 254 KSLNLDARQITDTGL--AALT-SLTGLTHLDLFGARITD--SGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTL 327 (406)
Q Consensus 254 ~~L~l~~~~~~~~~~--~~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~ 327 (406)
++|+++.|....... .... .-+.++++...+|...- .....-..+|++..+.+++|.+..... .....+|.+-.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 888887773322100 1111 12356666666665321 111223457999999999998765432 23455677878
Q ss_pred EeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHH----Hh--cCCCCCccEEEcc
Q 015457 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL----RH--LKPLKNLRSLTLE 380 (406)
Q Consensus 328 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~--l~~~~~L~~l~l~ 380 (406)
|+++.+..-.+...+.+.+|+.|..|.++++++.+..- .. ++.+++++.|+=+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 89988855666788899999999999999999754221 11 2567788877654
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=1.1e-08 Score=64.89 Aligned_cols=9 Identities=33% Similarity=0.663 Sum_probs=3.2
Q ss_pred CCCccEEEe
Q 015457 154 IGSLKVLNL 162 (406)
Q Consensus 154 l~~L~~L~l 162 (406)
+++|+.|++
T Consensus 48 l~~L~~L~l 56 (61)
T PF13855_consen 48 LPNLRYLDL 56 (61)
T ss_dssp STTESEEEE
T ss_pred CCCCCEEeC
Confidence 333333333
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.63 E-value=1.1e-07 Score=89.99 Aligned_cols=153 Identities=25% Similarity=0.339 Sum_probs=83.0
Q ss_pred CCCcEEeccCCC-CChhHHHHhh-CCCCCcEEECCCCCCChHH-HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCE
Q 015457 227 TNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303 (406)
Q Consensus 227 ~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 303 (406)
.+|++|++++.. +....+..++ -+|+|++|.+.+-.+.... .....++|+|..||+++++++.. ..+..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 456666665532 1222233333 2566666666665554432 23445666777777777666653 44556666666
Q ss_pred EEccCCCCCh-HHHHhhhcCCCCCEEeccCCCCCChh--HHHHH---HcCCCccEEEeeCCccChhHHHhc-CCCCCccE
Q 015457 304 LEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDK--TLELI---SGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRS 376 (406)
Q Consensus 304 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l---~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~ 376 (406)
|.+.+-.+.. .....+-.+.+|+.||++........ ..+.+ ..+|+|+.||.++..+.+...+.+ ...|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 6666654443 22334445677777777665333322 12222 146777777777777766666554 34555665
Q ss_pred EEccC
Q 015457 377 LTLES 381 (406)
Q Consensus 377 l~l~~ 381 (406)
+..-+
T Consensus 280 i~~~~ 284 (699)
T KOG3665|consen 280 IAALD 284 (699)
T ss_pred hhhhh
Confidence 55443
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.62 E-value=1.4e-07 Score=89.30 Aligned_cols=151 Identities=22% Similarity=0.274 Sum_probs=113.7
Q ss_pred CCCCcEEECCCCCCChH-HHHHH-hcCCCCCEEEccCCCCCh-hHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCC
Q 015457 250 LSSLKSLNLDARQITDT-GLAAL-TSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326 (406)
Q Consensus 250 ~~~L~~L~l~~~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 326 (406)
-.+|++|+++|...-.. .+..+ .-+|+|++|.+.|-.+.. ........+|+|..||+++++++.. ..++.+.+|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 46899999998654332 23333 367999999999976643 4455567899999999999999875 6678899999
Q ss_pred EEeccCCCCCChhHHHHHHcCCCccEEEeeCCccC------hhHHHhcCCCCCccEEEccCCCCChhhHHHHhhcCCCCc
Q 015457 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT------SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400 (406)
Q Consensus 327 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l 400 (406)
.|.+.+-..-.......+-.+++|+.||++..... ....+.-..+|.|+-|+.++..+....++.+.. .-|+|
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~-sH~~L 277 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN-SHPNL 277 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH-hCccH
Confidence 99999874444455666778999999999976632 222333356899999999999999988888865 66665
Q ss_pred ccc
Q 015457 401 VSF 403 (406)
Q Consensus 401 ~~l 403 (406)
+.+
T Consensus 278 ~~i 280 (699)
T KOG3665|consen 278 QQI 280 (699)
T ss_pred hhh
Confidence 543
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=6e-08 Score=91.99 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=70.5
Q ss_pred CCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEee
Q 015457 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356 (406)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 356 (406)
++.|+++++.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| .+....+..++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECc
Confidence 556677777666656666667777777777777776665666667777777777777 6666666667777777777777
Q ss_pred CCccChhHHHhcCC-CCCccEEEccCCC
Q 015457 357 NSRITSAGLRHLKP-LKNLRSLTLESCK 383 (406)
Q Consensus 357 ~~~~~~~~~~~l~~-~~~L~~l~l~~~~ 383 (406)
+|.+.+..+..+.. ..++..+++.+|+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 77766655555533 2345566666665
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.55 E-value=1.3e-07 Score=85.61 Aligned_cols=61 Identities=30% Similarity=0.526 Sum_probs=25.7
Q ss_pred CCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCC
Q 015457 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312 (406)
Q Consensus 249 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 312 (406)
.++++..+.+.++.+... ...++.++.++.|++++|.++.... +....+++.|+++++.+.
T Consensus 230 ~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 230 NLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hcccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 334444444444433332 1233334445555555544443222 344444555555444433
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=1.8e-07 Score=88.83 Aligned_cols=106 Identities=23% Similarity=0.280 Sum_probs=79.7
Q ss_pred CCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccC
Q 015457 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188 (406)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 188 (406)
++.|+++++.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 66778888877777777788888888888888887777777777888888888888888777777788888888888888
Q ss_pred CCCChhhhHhhhCC-CCCCEEEcCCCc
Q 015457 189 CGIGDEGLVNLTGL-CNLKCLELSDTQ 214 (406)
Q Consensus 189 ~~~~~~~~~~~~~~-~~L~~l~l~~~~ 214 (406)
|.+....+..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 87766666555442 345566666654
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=5.3e-08 Score=79.32 Aligned_cols=185 Identities=16% Similarity=0.125 Sum_probs=93.8
Q ss_pred CCCCCEEEcCCCcCCch--hHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHH-HHHhcCCCCC
Q 015457 202 LCNLKCLELSDTQVGSS--GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLT 278 (406)
Q Consensus 202 ~~~L~~l~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~ 278 (406)
+..++.+++..|.++.. ....+..+|.|+.|+++.|.+....-..-....+|++|.+.+..+..... ..+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 45566666666665442 23344566666666666665543221110234566666666655443222 2333455556
Q ss_pred EEEccCCCCChhH--HHHh-hcCCCCCEEEccCCCCChHHH-Hhh-hcCCCCCEEeccCCCCCChhHHHHHHcCCCccEE
Q 015457 279 HLDLFGARITDSG--AAYL-RNFKNLRSLEICGGGLTDAGV-KHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353 (406)
Q Consensus 279 ~L~l~~~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 353 (406)
.|.++.|.+.... .... ...+.++++++..|...-..- ..+ ..+|++..+.+..|+.-+....+....+|.+--|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 6655555322100 0001 112344445554443221100 011 2356777777777754444444555566666677
Q ss_pred EeeCCccChh-HHHhcCCCCCccEEEccCCCCCh
Q 015457 354 NVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 354 ~l~~~~~~~~-~~~~l~~~~~L~~l~l~~~~~~~ 386 (406)
+++.+++... ...++..++.|..+.+.++++.+
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 7777776542 34566677777777777777665
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=1.2e-07 Score=85.90 Aligned_cols=198 Identities=29% Similarity=0.383 Sum_probs=132.6
Q ss_pred EEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCC-CCcEEEcCCccCChhhhhhccCCCCccEEEecCC
Q 015457 87 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165 (406)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (406)
.+....+.+.. ....+...+.+..+++.++.++.. +....... +|+.++++++.+... +..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence 45555555421 223344557788888888877775 33444453 788888888887643 245667788888888888
Q ss_pred ccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHH
Q 015457 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245 (406)
Q Consensus 166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 245 (406)
++. ..+......+.|+.++++++.+..... .......|+.+.+.++.... ....+..+.++..+.+..+.+... +.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccCch-hhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeec-cc
Confidence 887 444444467888888888887754433 22344558888888875322 234456667777777777665542 44
Q ss_pred HhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHH
Q 015457 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293 (406)
Q Consensus 246 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 293 (406)
.++.++.++.|++++|.++.... ++...+++.++++++.+....+.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 56677889999999998888643 77788899999998887765433
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=1.1e-08 Score=93.17 Aligned_cols=128 Identities=25% Similarity=0.292 Sum_probs=76.9
Q ss_pred CcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccC
Q 015457 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332 (406)
Q Consensus 253 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 332 (406)
|.+.+++.|.+...+ ..+.-++.|+.|++++|+++... .+..++.|++|||+.|.+.-..--....|. |..|.++|
T Consensus 166 L~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMD-ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHH-HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 445555555554432 34444567777777777776532 566677777777777766554222222343 77777777
Q ss_pred CCCCChhHHHHHHcCCCccEEEeeCCccChhHH-HhcCCCCCccEEEccCCCCChh
Q 015457 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTAN 387 (406)
Q Consensus 333 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~ 387 (406)
| .++. ...+.++.+|+.||+++|-+.+... ..+-.+..|+.|++.||++...
T Consensus 242 N-~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 242 N-ALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred c-HHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 7 4443 3345677777788888776654332 2233456677888888876653
No 50
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.38 E-value=1.6e-08 Score=89.40 Aligned_cols=171 Identities=19% Similarity=0.186 Sum_probs=89.1
Q ss_pred EEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCc
Q 015457 87 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166 (406)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (406)
..+++.|.+.. .+..+..+..|+.+.+..|.+... |..+..+..|.+++++.|.+.. .|..++.++ |+.|.+++|.
T Consensus 79 ~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFSE-LPEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhcccccccc-CchHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecCc
Confidence 34444444442 222333334455555555544332 4455566666666666665542 334444444 6666666666
Q ss_pred cchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHH
Q 015457 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246 (406)
Q Consensus 167 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 246 (406)
++ ..|..++..+.|..++.+.|++... +..+..+.+|+.+.+..|++.... ..+. .-.|..|+++.|++.. .+..
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~lp-~El~-~LpLi~lDfScNkis~-iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLEDLP-EELC-SLPLIRLDFSCNKISY-LPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhhCC-HHHh-CCceeeeecccCceee-cchh
Confidence 55 4455555556666666666655322 333445555666666655554332 2333 3345666666666554 3444
Q ss_pred hhCCCCCcEEECCCCCCChH
Q 015457 247 LAGLSSLKSLNLDARQITDT 266 (406)
Q Consensus 247 l~~~~~L~~L~l~~~~~~~~ 266 (406)
|.++..|++|.+.+|.++..
T Consensus 230 fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhhhheeeeeccCCCCCC
Confidence 55666666666666666554
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=1.8e-08 Score=91.77 Aligned_cols=126 Identities=29% Similarity=0.328 Sum_probs=53.8
Q ss_pred ccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccC
Q 015457 157 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236 (406)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 236 (406)
|...+.++|.+. .+...+.-++.++.|++++|++.+.. .+..++.|++|++++|.+.....-...+|. |..|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 444444444444 33444444455555555555443222 344455555555555544332211111222 45555554
Q ss_pred CCCChhHHHHhhCCCCCcEEECCCCCCChH-HHHHHhcCCCCCEEEccCCCCC
Q 015457 237 TGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARIT 288 (406)
Q Consensus 237 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 288 (406)
|.++. ...+.++.+|+.|+++.|-+.+. ....+..+..|+.|.+.||.+-
T Consensus 242 N~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 44432 22233444555555544433331 1122223334445555554443
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=3.7e-08 Score=89.18 Aligned_cols=245 Identities=28% Similarity=0.346 Sum_probs=157.3
Q ss_pred hcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCE
Q 015457 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207 (406)
Q Consensus 128 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 207 (406)
..+..++.+.+..+.+.. ....+..+.+++.+++..|.+.. +...+..+++|+.+++++|.++... .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhh
Confidence 345566666677766554 22346677889999999988864 2222667889999999999876543 3445667899
Q ss_pred EEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHH-HHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCC
Q 015457 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286 (406)
Q Consensus 208 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 286 (406)
|++.+|.+... ..+..++.|+.++++++.+..... . ...+.+++.+.+.++.+..... +..+..+..+++..+.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhccccc
Confidence 99999887654 334457888888888888776444 2 4667888888888887776422 2222233344666666
Q ss_pred CChhHHHHhhcCC--CCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChh-
Q 015457 287 ITDSGAAYLRNFK--NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA- 363 (406)
Q Consensus 287 ~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~- 363 (406)
++.... +.... .|+.+++.++.+.... ..+..++.+..+++.++ .+.. ...+...+.+..+....+.+...
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 293 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSN-RISN--LEGLERLPKLSELWLNDNKLALSE 293 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhc-cccc--cccccccchHHHhccCcchhcchh
Confidence 654211 11222 3788888888877642 34556778888888877 3333 22334456666777777775421
Q ss_pred -HHHh--cCCCCCccEEEccCCCCChh
Q 015457 364 -GLRH--LKPLKNLRSLTLESCKVTAN 387 (406)
Q Consensus 364 -~~~~--l~~~~~L~~l~l~~~~~~~~ 387 (406)
..+. ....+.++.+.+.++++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 294 AISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred hhhccccccccccccccccccCccccc
Confidence 1111 35667888899998886653
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=3e-08 Score=89.79 Aligned_cols=245 Identities=31% Similarity=0.334 Sum_probs=164.4
Q ss_pred hcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCe
Q 015457 104 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183 (406)
Q Consensus 104 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 183 (406)
..+..++.+.+..+.+... ...+..+.+|+.+++.++.+..... .+..+++|+.|++++|.+.. ...+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhhh-hcccccccceeeeeccccchhhccc-chhhhhcchheecccccccc--ccchhhccchhh
Confidence 3455666666777766652 2346778999999999999875432 26678999999999999875 334567778999
Q ss_pred EEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhH-HhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCC
Q 015457 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262 (406)
Q Consensus 184 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 262 (406)
|++.+|.+.... .+..++.|+.++++++.+..... . ...+.+++.+.+.++.+..... +.....+..+.+..+.
T Consensus 145 L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhccccc
Confidence 999999875432 34458899999999999876544 2 4677899999999887765321 2223334444666666
Q ss_pred CChHHHHHHhcCC--CCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCCh-h
Q 015457 263 ITDTGLAALTSLT--GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD-K 339 (406)
Q Consensus 263 ~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~ 339 (406)
+... ..+..+. .|+.+.++++.+.... ..+..+..+..+++.++.+... ..+...+.+..+....+..... .
T Consensus 220 i~~~--~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 220 ISKL--EGLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred ceec--cCcccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhh
Confidence 6653 2222223 3889999999887532 3456678888999988877653 2234455666666666632211 1
Q ss_pred HHHH--HHcCCCccEEEeeCCccCh
Q 015457 340 TLEL--ISGLTGLVSLNVSNSRITS 362 (406)
Q Consensus 340 ~~~~--l~~~~~L~~L~l~~~~~~~ 362 (406)
..+. ....+.+..+.+.++++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhccccccccccccccccccCcccc
Confidence 1111 4456788889999888543
No 54
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.26 E-value=3.8e-08 Score=87.15 Aligned_cols=135 Identities=24% Similarity=0.263 Sum_probs=54.5
Q ss_pred HhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCC
Q 015457 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251 (406)
Q Consensus 172 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 251 (406)
|..+.++..|.+++++.|+++.. +..+..++ |+.+-+++|+++.. +..++..+.|..|+.+.|.+.. .+..++++.
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sNNkl~~l-p~~ig~~~tl~~ld~s~nei~s-lpsql~~l~ 189 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSNNKLTSL-PEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLT 189 (722)
T ss_pred chhhhhhhHHHHhhhccchhhcC-ChhhhcCc-ceeEEEecCccccC-CcccccchhHHHhhhhhhhhhh-chHHhhhHH
Confidence 33334444444444444443221 22222222 44444444443322 2223333444444444444332 223334444
Q ss_pred CCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCCh
Q 015457 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313 (406)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 313 (406)
+|+.|.+..|.+...+.+. ..+ .|.+|+++.|++.. .|..|.+|+.|++|-|.+|.+..
T Consensus 190 slr~l~vrRn~l~~lp~El-~~L-pLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEEL-CSL-PLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHHhhhhhhhCCHHH-hCC-ceeeeecccCceee-cchhhhhhhhheeeeeccCCCCC
Confidence 4444444444444432222 222 24445555544443 23344445555555555544443
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.26 E-value=1e-06 Score=82.31 Aligned_cols=239 Identities=29% Similarity=0.309 Sum_probs=123.7
Q ss_pred HhcCCCCcEeeccCcccccCc--cccccCCCCccEEeecCC-CCcCcCc---cccccCCCCccEEEeccCc-cChhHHHh
Q 015457 30 FAGLINLVKLDLERCTRIHGG--LVNLKGLMKLESLNIKWC-NCITDSD---MKPLSGLTNLKSLQISCSK-VTDSGIAY 102 (406)
Q Consensus 30 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~-~~~~~~~---~~~~~~~~~L~~L~l~~~~-~~~~~~~~ 102 (406)
...++.|+.+.+.+|...... ......+++|+.|++++| ....... ......+++|+.++++++. +++.....
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 445778888887777655542 234566778888887762 2222221 1223356778888887666 66666665
Q ss_pred hhc-CCCCCEEEecCCC-CChhhHHHH-hcCCCCcEEEcCCccCC-hh-hhhhccCCCCccEEEecCCccchhHHhhhcC
Q 015457 103 LKG-LQKLTLLNLEGCP-VTAACLDSL-SALGSLFYLNLNRCQLS-DD-GCEKFSKIGSLKVLNLGFNEITDECLVHLKG 177 (406)
Q Consensus 103 ~~~-l~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~~~-~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 177 (406)
+.. +++|+.|.+.++. ++......+ ..++.|+++++++|... +. .......+++++.+.+.....
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---------- 333 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---------- 333 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------
Confidence 543 7788888877665 444433333 34677888888876543 11 112223355555544332211
Q ss_pred CCCCCeEEccCCCC---ChhhhHhhhCCCCCCEEEcCCCcCCchh-HHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCC
Q 015457 178 LTNLESLNLDSCGI---GDEGLVNLTGLCNLKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253 (406)
Q Consensus 178 ~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 253 (406)
++.++.+.+.+... ..........++.++.+.+..+...... ...+.+|+.|+ ..+. ........+
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~---------~~~~~~~~l 403 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLE---------LRLCRSDSL 403 (482)
T ss_pred CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHH---------HHhccCCcc
Confidence 23333333332211 0122233455677777777766633333 23445556552 1111 111122237
Q ss_pred cEEECCCCCCCh-HHHHHHhc-CCCCCEEEccCCCCC
Q 015457 254 KSLNLDARQITD-TGLAALTS-LTGLTHLDLFGARIT 288 (406)
Q Consensus 254 ~~L~l~~~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~ 288 (406)
+.|.+..+.... ........ +..++.+++.++...
T Consensus 404 ~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 404 RVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred ceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 777777764332 22222222 566777777776543
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.22 E-value=4e-06 Score=78.27 Aligned_cols=132 Identities=33% Similarity=0.366 Sum_probs=77.1
Q ss_pred CCCCCCeEEccCCC-CChh-hhHhhhCCCCCCEEEcCCC-cC-Cc---hhHHhhcCCCCCcEEeccCCC-CChhHHHHhh
Q 015457 177 GLTNLESLNLDSCG-IGDE-GLVNLTGLCNLKCLELSDT-QV-GS---SGLRHLSGLTNLESINLSFTG-ISDGSLRKLA 248 (406)
Q Consensus 177 ~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~l~l~~~-~~-~~---~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~ 248 (406)
..+.|+.+.+.++. +... .......++.|+.++++++ .. .. ........+++|+.++++++. +++.....++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 45777777777662 3222 2334455677787777652 11 11 112233456778888887776 6666666665
Q ss_pred C-CCCCcEEECCCCC-CChHHHHHH-hcCCCCCEEEccCCCCC-hh-HHHHhhcCCCCCEEEccC
Q 015457 249 G-LSSLKSLNLDARQ-ITDTGLAAL-TSLTGLTHLDLFGARIT-DS-GAAYLRNFKNLRSLEICG 308 (406)
Q Consensus 249 ~-~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~-~~-~~~~~~~~~~L~~L~l~~ 308 (406)
. +++|+.|.+..|. +++.+...+ ..++.|++|++++|... +. .......+++++.|.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 4 7788888877666 566555443 45777888888877653 22 222234466666655443
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=2.1e-06 Score=61.81 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=86.7
Q ss_pred CCCcEEECCCCCCChHH--HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEE
Q 015457 251 SSLKSLNLDARQITDTG--LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328 (406)
Q Consensus 251 ~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 328 (406)
..+..++++.|++.... ...+.....|+..++++|.+...++..-..++.+++|++++|++.+. |..++.+|.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhc
Confidence 34556677777766432 23334456677788888888776666666778888889988888887 4458888889999
Q ss_pred eccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCChh
Q 015457 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387 (406)
Q Consensus 329 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~ 387 (406)
+++.| .+... +..+..+.++-.|+..++.+..+....+.. ...-.+++.+.++...
T Consensus 106 Nl~~N-~l~~~-p~vi~~L~~l~~Lds~~na~~eid~dl~~s-~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 106 NLRFN-PLNAE-PRVIAPLIKLDMLDSPENARAEIDVDLFYS-SLPALIKLGNEPLGDE 161 (177)
T ss_pred ccccC-ccccc-hHHHHHHHhHHHhcCCCCccccCcHHHhcc-ccHHHHHhcCCccccc
Confidence 99888 34433 344445777888888888766655443321 2222334455555543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=1.1e-05 Score=62.37 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=91.6
Q ss_pred cEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCC
Q 015457 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333 (406)
Q Consensus 254 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 333 (406)
+++++.+.++....- .-........+++++|.+.. ...+.+++.|.+|.+.+|.++...+..-.-+|+|+.|.+.+|
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 445555554444221 11123466788888887753 334677899999999999998876654455789999999999
Q ss_pred CCCCh-hHHHHHHcCCCccEEEeeCCccChhHH---HhcCCCCCccEEEccCCCCChh
Q 015457 334 CNLTD-KTLELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESCKVTAN 387 (406)
Q Consensus 334 ~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~l~l~~~~~~~~ 387 (406)
.+.. .....+..||.|+.|.+-+|+++...- ..+..+|+|+.|++++-...++
T Consensus 99 -si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER 155 (233)
T KOG1644|consen 99 -SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKER 155 (233)
T ss_pred -chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHH
Confidence 4544 345667789999999999999765333 2346789999999988765553
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.86 E-value=1.6e-05 Score=61.43 Aligned_cols=109 Identities=22% Similarity=0.288 Sum_probs=84.0
Q ss_pred CCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHH-HHhhhcCCCCCEE
Q 015457 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLL 328 (406)
Q Consensus 250 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 328 (406)
..+...+++.+|.+.. ...++.++.|..|.+.+|+++...+..-.-+++|+.|.+.+|.+...+ ..-+..||.|++|
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4577888999988877 467778899999999999999876666666899999999999887654 2346789999999
Q ss_pred eccCCCCCChhH--HHHHHcCCCccEEEeeCCcc
Q 015457 329 NLSQNCNLTDKT--LELISGLTGLVSLNVSNSRI 360 (406)
Q Consensus 329 ~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~ 360 (406)
.+-+|+.-...- ...+..+|+|+.||+.+-..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 999984222111 12345789999999988764
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=2.5e-05 Score=45.17 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=25.9
Q ss_pred CCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 386 (406)
++|++|++++|++++..+ .+.++++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence 467778888888776433 46778888888888887763
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=1.6e-05 Score=61.52 Aligned_cols=83 Identities=23% Similarity=0.297 Sum_probs=56.7
Q ss_pred CCEEEccCCCCChhHHHHhhcCCCCCEEEccCCC-CChHHHHhhhc-CCCCCEEeccCCCCCChhHHHHHHcCCCccEEE
Q 015457 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354 (406)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 354 (406)
++.++-+++.+..++...+..++.++.|.+.+|. +.+.....++. .|+|+.|++++|+.+++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 5666667777777777777777777777777764 44444444432 477777777777777777777777777777777
Q ss_pred eeCCc
Q 015457 355 VSNSR 359 (406)
Q Consensus 355 l~~~~ 359 (406)
+.+-+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 77665
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.71 E-value=1.4e-05 Score=59.66 Aligned_cols=10 Identities=10% Similarity=0.401 Sum_probs=3.8
Q ss_pred cCCCCCEEec
Q 015457 321 DLSSLTLLNL 330 (406)
Q Consensus 321 ~~~~L~~L~l 330 (406)
.+++++.+.+
T Consensus 79 ~~~~l~~i~~ 88 (129)
T PF13306_consen 79 NCTNLKNIDI 88 (129)
T ss_dssp T-TTECEEEE
T ss_pred cccccccccc
Confidence 3344444444
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=8e-06 Score=66.32 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=48.8
Q ss_pred CCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCCh-hHHHHHHcCCCccEE
Q 015457 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD-KTLELISGLTGLVSL 353 (406)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L 353 (406)
.+.++|++.||.+++. .....++.|+.|.++-|.++.. ..+..|.+|+.|+|..| .+.+ .-...+.++|+|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 4556677777776653 2345667777777777766653 33556677777777766 3333 233556666777777
Q ss_pred EeeCCc
Q 015457 354 NVSNSR 359 (406)
Q Consensus 354 ~l~~~~ 359 (406)
.+..|+
T Consensus 94 WL~ENP 99 (388)
T KOG2123|consen 94 WLDENP 99 (388)
T ss_pred hhccCC
Confidence 777665
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.62 E-value=8.2e-05 Score=55.50 Aligned_cols=82 Identities=24% Similarity=0.296 Sum_probs=28.4
Q ss_pred ccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCC
Q 015457 5 LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 84 (406)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 84 (406)
|.++++|+.+.+... +..+....|..+++|+.+.+.+. ........+.+++.|+.+.+.. .+.......+..+++
T Consensus 8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccccccc
Confidence 445555555555432 22333344555555555555442 1111122344444455555532 122222233344445
Q ss_pred ccEEEec
Q 015457 85 LKSLQIS 91 (406)
Q Consensus 85 L~~L~l~ 91 (406)
|+.+.+.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 5554443
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=9.8e-06 Score=58.50 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=40.8
Q ss_pred cCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCE
Q 015457 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303 (406)
Q Consensus 224 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 303 (406)
..-..|+..++++|.+.+.....-..++..+.+++.+|++.+.+.+ ++.++.|+.++++.|.+...+ ..+..+.++-.
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p-~vi~~L~~l~~ 127 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEP-RVIAPLIKLDM 127 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccch-HHHHHHHhHHH
Confidence 3344455555555555443333333344555555555555554333 555555555555555554332 22223444444
Q ss_pred EEccCCCC
Q 015457 304 LEICGGGL 311 (406)
Q Consensus 304 L~l~~~~~ 311 (406)
|+..+|..
T Consensus 128 Lds~~na~ 135 (177)
T KOG4579|consen 128 LDSPENAR 135 (177)
T ss_pred hcCCCCcc
Confidence 44444443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=1.1e-05 Score=65.48 Aligned_cols=78 Identities=24% Similarity=0.275 Sum_probs=34.8
Q ss_pred CCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHH-HHhhhcCCCCCEEec
Q 015457 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNL 330 (406)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 330 (406)
+.+.|++.||.+++ ......|+.|+.|.++-|.++.. ..+..|++|++|++..|.|.+.. ...+..+|+|+.|.|
T Consensus 20 ~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccH--HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 33444444444444 23334455555555555554432 22344455555555544444321 122334455555555
Q ss_pred cCC
Q 015457 331 SQN 333 (406)
Q Consensus 331 ~~~ 333 (406)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 544
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=4.9e-05 Score=58.86 Aligned_cols=82 Identities=32% Similarity=0.475 Sum_probs=38.9
Q ss_pred CCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHc-CCCccEEEeeCCc-cChhHHHhcCCCCCccEEE
Q 015457 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLT 378 (406)
Q Consensus 301 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~l~ 378 (406)
++.++-+++.+...+.+.+..++.++.|.+.+|..+.+-..+.+.+ .++|+.|++++|+ |++.....+..+++|+.+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 3444444444444444445555555555555554444443333332 3455555555544 4444444444455555554
Q ss_pred ccCC
Q 015457 379 LESC 382 (406)
Q Consensus 379 l~~~ 382 (406)
+.+=
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 4443
No 68
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.45 E-value=0.00029 Score=40.68 Aligned_cols=35 Identities=43% Similarity=0.539 Sum_probs=14.2
Q ss_pred CccEEEecCCccchhHHhhhcCCCCCCeEEccCCCC
Q 015457 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191 (406)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 191 (406)
+|++|++++|.+. .++..++.+++|+.|++++|.+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 3444444444444 2222344444444444444444
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.41 E-value=0.00068 Score=59.78 Aligned_cols=136 Identities=19% Similarity=0.228 Sum_probs=75.1
Q ss_pred HHhcCCCCcEeeccCcccccCccccccCCC-CccEEeecCCCCcCcCccccccCCCCccEEEeccC-ccChhHHHhhhcC
Q 015457 29 AFAGLINLVKLDLERCTRIHGGLVNLKGLM-KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGL 106 (406)
Q Consensus 29 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l 106 (406)
.+..++++++|++++|. +...+ .+| +|++|.+++|..++... ..+ .++|++|.+++| .+.. . .
T Consensus 47 r~~~~~~l~~L~Is~c~-L~sLP----~LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~s-L------P 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCD-IESLP----VLPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISG-L------P 111 (426)
T ss_pred HHHHhcCCCEEEeCCCC-CcccC----CCCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccc-c------c
Confidence 34557888888888874 33333 233 58888888877654322 222 357888888876 3431 1 1
Q ss_pred CCCCEEEecCCCCChhhHHHHhcC-CCCcEEEcCCccCChhhhhhcc-CC-CCccEEEecCCccchhHHhhhcCCCCCCe
Q 015457 107 QKLTLLNLEGCPVTAACLDSLSAL-GSLFYLNLNRCQLSDDGCEKFS-KI-GSLKVLNLGFNEITDECLVHLKGLTNLES 183 (406)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~-~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 183 (406)
+.|+.|++..+.... +..+ ++|+.|.+.+.... ....+. .+ ++|+.|++++|... ..|..+. .+|+.
T Consensus 112 ~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~--~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~ 181 (426)
T PRK15386 112 ESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPE--NQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQS 181 (426)
T ss_pred cccceEEeCCCCCcc-----cccCcchHhheeccccccc--cccccccccCCcccEEEecCCCcc-cCccccc--ccCcE
Confidence 357777776544322 1222 35666666432211 000011 12 57888888877654 3333322 57788
Q ss_pred EEccCC
Q 015457 184 LNLDSC 189 (406)
Q Consensus 184 L~l~~~ 189 (406)
|.++.+
T Consensus 182 L~ls~n 187 (426)
T PRK15386 182 ITLHIE 187 (426)
T ss_pred EEeccc
Confidence 887654
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.20 E-value=0.00015 Score=58.64 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=6.5
Q ss_pred CCCCEEEccCCCCC
Q 015457 275 TGLTHLDLFGARIT 288 (406)
Q Consensus 275 ~~L~~L~l~~~~~~ 288 (406)
|+|+++++++|++.
T Consensus 91 P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIK 104 (260)
T ss_pred CceeEEeecCCccc
Confidence 44444444444443
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.00014 Score=58.92 Aligned_cols=63 Identities=24% Similarity=0.169 Sum_probs=28.9
Q ss_pred hcCCCCCEEEecCC--CCChhhHHHHhcCCCCcEEEcCCccCChh-hhhhccCCCCccEEEecCCc
Q 015457 104 KGLQKLTLLNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNE 166 (406)
Q Consensus 104 ~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~ 166 (406)
..+++|+.|.++.| .+...+......+|+|+++++++|++... ....+..+++|..|++.+|.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 34445555555555 33332222233346666666666555421 11223344455555555543
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.93 E-value=0.0027 Score=56.15 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=51.1
Q ss_pred HhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCC-CCChhHHHHhhcCC
Q 015457 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFK 299 (406)
Q Consensus 221 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~ 299 (406)
..+..+..++.|++++|.++... .-.++|++|.+++|.-....+..+. ++|++|.+++| .+.. . .+
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~s-L------P~ 112 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISG-L------PE 112 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccc-c------cc
Confidence 33456789999999999776642 1235799999988644322223332 58999999998 4432 1 35
Q ss_pred CCCEEEccCCCC
Q 015457 300 NLRSLEICGGGL 311 (406)
Q Consensus 300 ~L~~L~l~~~~~ 311 (406)
+|+.|++.++..
T Consensus 113 sLe~L~L~~n~~ 124 (426)
T PRK15386 113 SVRSLEIKGSAT 124 (426)
T ss_pred ccceEEeCCCCC
Confidence 677787766543
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.91 E-value=0.00024 Score=64.89 Aligned_cols=182 Identities=27% Similarity=0.397 Sum_probs=88.0
Q ss_pred ccEEEeccCccChhHH----HhhhcCCCCCEEEecCCCCChhhHHHHh----cC-CCCcEEEcCCccCChhh----hhhc
Q 015457 85 LKSLQISCSKVTDSGI----AYLKGLQKLTLLNLEGCPVTAACLDSLS----AL-GSLFYLNLNRCQLSDDG----CEKF 151 (406)
Q Consensus 85 L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~l-~~L~~L~l~~~~~~~~~----~~~~ 151 (406)
+..+.+.+|.+.+... ..+...+.|..|+++++.+.......+. .. ..++++++..|.+.... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4444555554443322 2334455566666666655432221111 11 33455555555544332 2233
Q ss_pred cCCCCccEEEecCCccch----hHHhhhc----CCCCCCeEEccCCCCChhhh----HhhhCCCC-CCEEEcCCCcCCch
Q 015457 152 SKIGSLKVLNLGFNEITD----ECLVHLK----GLTNLESLNLDSCGIGDEGL----VNLTGLCN-LKCLELSDTQVGSS 218 (406)
Q Consensus 152 ~~l~~L~~L~l~~~~~~~----~~~~~~~----~~~~L~~L~l~~~~~~~~~~----~~~~~~~~-L~~l~l~~~~~~~~ 218 (406)
.....++.++++.|.+.. ..+..+. ...+++.+.+.+|.++.... ..+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 334556666666655432 1122222 34566667776665543222 22233333 55566666666544
Q ss_pred hHHhh----cCC-CCCcEEeccCCCCChhHH----HHhhCCCCCcEEECCCCCCChH
Q 015457 219 GLRHL----SGL-TNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDT 266 (406)
Q Consensus 219 ~~~~l----~~~-~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~ 266 (406)
....+ ..+ +.++.+++..|.+++... ..+..+++++++.+..|.+...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 32222 223 455677777776655433 2333456777777777766654
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.98 E-value=0.0012 Score=60.33 Aligned_cols=181 Identities=30% Similarity=0.430 Sum_probs=82.5
Q ss_pred CCeEEccCCCCChhhhH----hhhCCCCCCEEEcCCCcCCchhHHhhcC----C-CCCcEEeccCCCCChhH----HHHh
Q 015457 181 LESLNLDSCGIGDEGLV----NLTGLCNLKCLELSDTQVGSSGLRHLSG----L-TNLESINLSFTGISDGS----LRKL 247 (406)
Q Consensus 181 L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~l~~----~-~~L~~L~l~~~~~~~~~----~~~l 247 (406)
+..+.+.+|.+...... .+...+.|..+++..+.++......+.. . ..++.|.+..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55666666665443332 2334566777777777666443333321 1 23444555555544332 2233
Q ss_pred hCCCCCcEEECCCCCCChHHH----HHHh----cCCCCCEEEccCCCCChhHHH----HhhcCCC-CCEEEccCCCCChH
Q 015457 248 AGLSSLKSLNLDARQITDTGL----AALT----SLTGLTHLDLFGARITDSGAA----YLRNFKN-LRSLEICGGGLTDA 314 (406)
Q Consensus 248 ~~~~~L~~L~l~~~~~~~~~~----~~~~----~~~~L~~L~l~~~~~~~~~~~----~~~~~~~-L~~L~l~~~~~~~~ 314 (406)
.....++.+++..|.+...+. ..+. ...++++|.+++|.++..... .+...++ +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 345556666666665543211 1111 234555666666655532221 1223333 44455555555544
Q ss_pred HHHhh----hcC-CCCCEEeccCCCCCChhHHH----HHHcCCCccEEEeeCCccCh
Q 015457 315 GVKHI----KDL-SSLTLLNLSQNCNLTDKTLE----LISGLTGLVSLNVSNSRITS 362 (406)
Q Consensus 315 ~~~~~----~~~-~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~ 362 (406)
+...+ ..+ +.++.++++.| .+.+.... .+..++.++.+.++.|++.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 33221 122 34455555555 33332222 22234455555555555443
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.51 E-value=0.056 Score=26.94 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=18.3
Q ss_pred CCCCceeeccCCccCCHHHHHHHh
Q 015457 8 LSNLTSLSFRRNNAITAQGMKAFA 31 (406)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~ 31 (406)
|++|++|++++|..+++.....++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 578888999888877777665554
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.85 E-value=0.055 Score=26.32 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=9.9
Q ss_pred CCccEEEccCCCCChhhHHHH
Q 015457 372 KNLRSLTLESCKVTANDIKRL 392 (406)
Q Consensus 372 ~~L~~l~l~~~~~~~~~~~~~ 392 (406)
++|+.|++++|+++..+...+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455555555555555544443
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.63 E-value=0.12 Score=25.72 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=12.3
Q ss_pred CCCCCEEeccCCCCCChhHHHHH
Q 015457 322 LSSLTLLNLSQNCNLTDKTLELI 344 (406)
Q Consensus 322 ~~~L~~L~l~~~~~~~~~~~~~l 344 (406)
||+|+.|++++|..+++.....+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 35556666666655555544433
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.25 E-value=0.052 Score=26.42 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=5.2
Q ss_pred CCCEEEccCCCCChH
Q 015457 300 NLRSLEICGGGLTDA 314 (406)
Q Consensus 300 ~L~~L~l~~~~~~~~ 314 (406)
+|++|++++|.+++.
T Consensus 3 ~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 3 NLETLDLSNNQITDE 17 (24)
T ss_dssp T-SEEE-TSSBEHHH
T ss_pred CCCEEEccCCcCCHH
Confidence 334444444443333
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.73 E-value=0.04 Score=26.18 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=8.2
Q ss_pred CccEEEeeCCccCh
Q 015457 349 GLVSLNVSNSRITS 362 (406)
Q Consensus 349 ~L~~L~l~~~~~~~ 362 (406)
+|++|++++|.++.
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 35666666666553
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.11 E-value=0.09 Score=23.12 Aligned_cols=10 Identities=50% Similarity=0.770 Sum_probs=3.4
Q ss_pred ccEEEeeCCc
Q 015457 350 LVSLNVSNSR 359 (406)
Q Consensus 350 L~~L~l~~~~ 359 (406)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3444444443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.55 E-value=0.43 Score=23.62 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=11.7
Q ss_pred CCccEEEeeCCccChhHHHhc
Q 015457 348 TGLVSLNVSNSRITSAGLRHL 368 (406)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~l 368 (406)
++|+.|++++|.+.......|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666555444443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.55 E-value=0.43 Score=23.62 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=11.7
Q ss_pred CCccEEEeeCCccChhHHHhc
Q 015457 348 TGLVSLNVSNSRITSAGLRHL 368 (406)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~l 368 (406)
++|+.|++++|.+.......|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666555444443
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.26 E-value=0.95 Score=22.94 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=12.9
Q ss_pred CCccEEEccCCCCChhhHHHH
Q 015457 372 KNLRSLTLESCKVTANDIKRL 392 (406)
Q Consensus 372 ~~L~~l~l~~~~~~~~~~~~~ 392 (406)
++|++|++++|.+...+...+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 356666666666666655544
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.24 E-value=1.4 Score=40.55 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=38.2
Q ss_pred hcCCCCCEEEccCCCCChHHH-Hh-hhcCCCCCEEeccCCCCCChhHHHHHH--cCCCccEEEeeCCccC
Q 015457 296 RNFKNLRSLEICGGGLTDAGV-KH-IKDLSSLTLLNLSQNCNLTDKTLELIS--GLTGLVSLNVSNSRIT 361 (406)
Q Consensus 296 ~~~~~L~~L~l~~~~~~~~~~-~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~ 361 (406)
.+.+.+..+++++|.+..... .. -...|+|+.|+|++|....... ..+. +...|++|-+.||++.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccc
Confidence 356778888888887654321 11 2346888888888872222211 1222 2345778888888764
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.77 E-value=3.7 Score=20.43 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=5.9
Q ss_pred CccEEEeeCCcc
Q 015457 349 GLVSLNVSNSRI 360 (406)
Q Consensus 349 ~L~~L~l~~~~~ 360 (406)
+|+.|++++|.|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 445555555544
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.88 E-value=8 Score=35.90 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=27.2
Q ss_pred CCCCCcEEeccCCCCChh-HHHHhh-CCCCCcEEECCCC--CCChHHH-HHHhcCCCCCEEEccCCCCC
Q 015457 225 GLTNLESINLSFTGISDG-SLRKLA-GLSSLKSLNLDAR--QITDTGL-AALTSLTGLTHLDLFGARIT 288 (406)
Q Consensus 225 ~~~~L~~L~l~~~~~~~~-~~~~l~-~~~~L~~L~l~~~--~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 288 (406)
+.+.+..+.+++|.+... ....+. ..|+|+.|+|++| .+..... .-+ +...|++|-+.||.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccc
Confidence 345555555555544321 111122 3455666666655 2222111 111 2234555555565554
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=51.19 E-value=0.3 Score=39.48 Aligned_cols=17 Identities=12% Similarity=0.407 Sum_probs=7.7
Q ss_pred cccCCCCccEEEeccCc
Q 015457 78 PLSGLTNLKSLQISCSK 94 (406)
Q Consensus 78 ~~~~~~~L~~L~l~~~~ 94 (406)
.+......+.|+++.+.
T Consensus 37 ei~~~kr~tvld~~s~r 53 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR 53 (326)
T ss_pred hhhccceeeeehhhhhH
Confidence 33344444455544443
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=43.32 E-value=0.72 Score=37.40 Aligned_cols=85 Identities=12% Similarity=-0.023 Sum_probs=36.4
Q ss_pred ccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCC
Q 015457 54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133 (406)
Q Consensus 54 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 133 (406)
+..+.+.+.||++.+.... ....++.+..+..++++.+.+. ..+..+.....++.++...|..... |..+...+++
T Consensus 38 i~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhC-CccccccCCc
Confidence 4445556666665543211 2223334455555555544433 1222333333344444444433332 4444444455
Q ss_pred cEEEcCCcc
Q 015457 134 FYLNLNRCQ 142 (406)
Q Consensus 134 ~~L~l~~~~ 142 (406)
++++...+.
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 544444443
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=41.99 E-value=17 Score=18.08 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=10.7
Q ss_pred CCccEEEccCCCCCh
Q 015457 372 KNLRSLTLESCKVTA 386 (406)
Q Consensus 372 ~~L~~l~l~~~~~~~ 386 (406)
++|+.|++++|+++.
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 467788888887653
Done!