Query 015457
Match_columns 406
No_of_seqs 261 out of 3119
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 12:57:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 7.1E-42 2.4E-46 325.1 19.4 381 2-386 50-514 (606)
2 3rgz_A Protein brassinosteroid 100.0 3.1E-42 1.1E-46 334.5 12.6 393 5-404 219-710 (768)
3 3t6q_A CD180 antigen; protein- 100.0 3.3E-41 1.1E-45 320.5 18.7 380 2-386 74-537 (606)
4 3rgz_A Protein brassinosteroid 100.0 2.5E-42 8.7E-47 335.1 8.7 380 2-386 240-718 (768)
5 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-40 1.3E-44 313.1 8.0 377 4-385 51-534 (606)
6 4eco_A Uncharacterized protein 100.0 2.1E-39 7.2E-44 307.8 12.4 352 27-388 199-603 (636)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-39 5.8E-44 308.8 10.1 379 2-386 73-559 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-38 7.7E-43 304.9 16.0 142 3-146 43-186 (680)
9 2z63_A TOLL-like receptor 4, v 100.0 2.6E-39 8.7E-44 305.6 8.9 377 4-386 47-532 (570)
10 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-38 1.2E-42 303.6 16.6 231 9-241 25-286 (680)
11 4eco_A Uncharacterized protein 100.0 1.1E-38 3.7E-43 302.9 10.2 342 50-404 198-593 (636)
12 2z63_A TOLL-like receptor 4, v 100.0 2.6E-39 8.9E-44 305.5 5.6 389 9-405 28-525 (570)
13 3v47_A TOLL-like receptor 5B a 100.0 8.8E-38 3E-42 286.8 14.8 361 9-386 30-409 (455)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3E-37 1E-41 290.0 18.8 179 204-386 311-511 (549)
15 2z7x_B TOLL-like receptor 1, v 100.0 4.2E-37 1.4E-41 286.9 19.3 371 1-387 15-483 (520)
16 3j0a_A TOLL-like receptor 5; m 100.0 1E-38 3.4E-43 313.0 7.5 379 2-386 41-518 (844)
17 4ecn_A Leucine-rich repeat pro 100.0 1.4E-37 4.7E-42 300.1 14.7 351 27-388 441-843 (876)
18 2z81_A CD282 antigen, TOLL-lik 100.0 8.3E-37 2.8E-41 287.0 18.4 388 9-404 26-503 (549)
19 1z7x_W Ribonuclease inhibitor; 100.0 3.6E-35 1.2E-39 269.9 28.7 393 8-403 2-460 (461)
20 3v47_A TOLL-like receptor 5B a 100.0 5.5E-37 1.9E-41 281.5 15.7 345 2-362 47-409 (455)
21 3j0a_A TOLL-like receptor 5; m 100.0 3.9E-38 1.3E-42 308.8 5.6 376 2-386 66-540 (844)
22 4ecn_A Leucine-rich repeat pro 100.0 1.9E-36 6.6E-41 292.1 14.0 341 50-404 440-833 (876)
23 1o6v_A Internalin A; bacterial 100.0 1.8E-34 6.1E-39 264.8 26.0 345 8-386 45-389 (466)
24 1z7x_W Ribonuclease inhibitor; 100.0 4.1E-34 1.4E-38 262.9 25.0 358 34-393 3-419 (461)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.2E-35 1.4E-39 275.5 14.8 363 9-386 52-511 (562)
26 1o6v_A Internalin A; bacterial 100.0 6.4E-33 2.2E-37 254.5 27.7 328 4-363 63-390 (466)
27 4fmz_A Internalin; leucine ric 100.0 5.9E-33 2E-37 245.4 26.6 307 54-385 40-346 (347)
28 2id5_A Lingo-1, leucine rich r 100.0 1.4E-34 4.9E-39 266.8 14.5 302 58-361 32-333 (477)
29 4fmz_A Internalin; leucine ric 100.0 3.5E-32 1.2E-36 240.4 27.9 306 31-361 41-346 (347)
30 2z7x_B TOLL-like receptor 1, v 100.0 7.3E-34 2.5E-38 265.0 16.8 348 2-362 38-482 (520)
31 2id5_A Lingo-1, leucine rich r 100.0 7.9E-34 2.7E-38 261.8 15.6 301 34-335 32-332 (477)
32 3ogk_B Coronatine-insensitive 100.0 7E-32 2.4E-36 255.9 27.2 388 7-401 110-541 (592)
33 3o6n_A APL1; leucine-rich repe 100.0 8.2E-33 2.8E-37 248.2 17.6 317 56-392 43-359 (390)
34 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-33 7E-38 264.0 11.2 382 7-405 29-504 (562)
35 3ogk_B Coronatine-insensitive 100.0 1.4E-31 4.8E-36 253.8 23.5 396 5-404 69-519 (592)
36 2p1m_B Transport inhibitor res 100.0 5.8E-31 2E-35 249.7 26.9 389 6-401 102-534 (594)
37 4g8a_A TOLL-like receptor 4; l 100.0 9E-33 3.1E-37 264.4 11.5 374 10-386 53-581 (635)
38 3oja_B Anopheles plasmodium-re 100.0 4.5E-32 1.5E-36 256.2 15.7 316 57-392 50-365 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 1.5E-31 5.3E-36 240.0 17.7 316 33-368 44-359 (390)
40 2p1m_B Transport inhibitor res 100.0 2E-30 6.9E-35 246.0 22.9 394 5-404 62-512 (594)
41 3oja_B Anopheles plasmodium-re 100.0 9.3E-31 3.2E-35 247.2 17.1 312 34-365 51-362 (597)
42 3bz5_A Internalin-J, INLJ; leu 100.0 5E-30 1.7E-34 233.3 19.5 262 4-311 37-298 (457)
43 4g8a_A TOLL-like receptor 4; l 100.0 9.1E-30 3.1E-34 243.6 12.4 357 2-361 69-580 (635)
44 1xku_A Decorin; proteoglycan, 100.0 2.9E-29 1E-33 219.9 12.8 289 59-383 32-330 (330)
45 1xku_A Decorin; proteoglycan, 100.0 9E-29 3.1E-33 216.8 14.8 288 35-333 32-329 (330)
46 3bz5_A Internalin-J, INLJ; leu 100.0 9.6E-29 3.3E-33 224.9 14.2 281 4-333 59-349 (457)
47 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-29 4.6E-34 222.1 7.8 288 59-383 34-331 (332)
48 2ft3_A Biglycan; proteoglycan, 100.0 2.7E-28 9.2E-33 213.9 11.7 287 35-333 34-330 (332)
49 1jl5_A Outer protein YOPM; leu 99.9 3.6E-28 1.2E-32 220.9 10.8 267 83-386 111-410 (454)
50 1jl5_A Outer protein YOPM; leu 99.9 2.7E-27 9.2E-32 215.2 12.8 338 2-386 5-371 (454)
51 1ogq_A PGIP-2, polygalacturona 99.9 5.9E-29 2E-33 215.6 1.8 228 83-312 50-281 (313)
52 1ogq_A PGIP-2, polygalacturona 99.9 2.1E-28 7.3E-33 212.2 5.1 249 58-310 50-302 (313)
53 2z80_A TOLL-like receptor 2, v 99.9 2.4E-27 8.1E-32 209.7 11.9 282 81-386 29-315 (353)
54 2z80_A TOLL-like receptor 2, v 99.9 7.5E-27 2.5E-31 206.5 11.5 275 56-334 29-312 (353)
55 1ozn_A Reticulon 4 receptor; N 99.9 6E-26 2.1E-30 194.5 8.8 203 107-333 32-235 (285)
56 3zyi_A Leucine-rich repeat-con 99.9 1.6E-25 5.5E-30 204.6 11.6 246 109-360 56-302 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 1.9E-25 6.5E-30 203.4 11.2 246 109-360 45-291 (440)
58 3o53_A Protein LRIM1, AGAP0063 99.9 4.9E-26 1.7E-30 197.9 6.8 259 86-359 13-273 (317)
59 3zyi_A Leucine-rich repeat-con 99.9 2E-25 7E-30 203.9 10.8 245 85-334 56-301 (452)
60 3zyj_A Leucine-rich repeat-con 99.9 2.1E-25 7.3E-30 203.0 10.9 246 85-335 45-291 (440)
61 2z66_A Variable lymphocyte rec 99.9 6.2E-26 2.1E-30 196.6 5.8 247 110-361 10-261 (306)
62 1ozn_A Reticulon 4 receptor; N 99.9 3.8E-25 1.3E-29 189.6 9.9 224 134-361 14-238 (285)
63 2z66_A Variable lymphocyte rec 99.9 9.7E-25 3.3E-29 189.1 11.1 226 83-333 28-258 (306)
64 3o53_A Protein LRIM1, AGAP0063 99.9 3E-26 1E-30 199.2 0.7 259 109-382 12-272 (317)
65 2ast_B S-phase kinase-associat 99.9 5.9E-23 2E-27 180.5 19.9 253 108-368 48-313 (336)
66 2ca6_A RAN GTPase-activating p 99.9 3E-22 1E-26 179.2 23.3 240 124-364 25-319 (386)
67 2ast_B S-phase kinase-associat 99.9 6.6E-23 2.2E-27 180.2 18.4 251 131-388 47-309 (336)
68 4fcg_A Uncharacterized protein 99.9 7E-24 2.4E-28 184.8 11.6 205 79-287 100-313 (328)
69 2ca6_A RAN GTPase-activating p 99.9 3.6E-22 1.2E-26 178.7 22.9 257 101-358 26-340 (386)
70 4fcg_A Uncharacterized protein 99.9 2.2E-24 7.5E-29 188.0 8.3 231 83-333 81-311 (328)
71 3goz_A Leucine-rich repeat-con 99.9 5.7E-23 1.9E-27 182.0 15.3 223 111-333 2-263 (362)
72 1wwl_A Monocyte differentiatio 99.9 6.5E-25 2.2E-29 190.4 1.3 205 154-386 94-310 (312)
73 1wwl_A Monocyte differentiatio 99.9 1.4E-24 4.9E-29 188.2 1.6 203 105-313 93-310 (312)
74 3g06_A SSPH2 (leucine-rich rep 99.9 4.7E-22 1.6E-26 186.2 18.7 268 34-347 40-307 (622)
75 3goz_A Leucine-rich repeat-con 99.9 2.6E-22 9E-27 177.7 15.4 252 87-339 2-299 (362)
76 3oja_A Leucine-rich immune mol 99.9 6.3E-24 2.1E-28 195.0 4.9 236 83-356 34-270 (487)
77 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-21 7.3E-26 181.7 21.2 244 34-319 61-304 (622)
78 3oja_A Leucine-rich immune mol 99.9 1.3E-23 4.3E-28 193.0 5.5 237 56-307 32-270 (487)
79 2z62_A TOLL-like receptor 4, v 99.9 8.9E-23 3E-27 174.0 7.1 208 155-385 28-237 (276)
80 2z62_A TOLL-like receptor 4, v 99.9 1.1E-21 3.8E-26 167.1 9.2 133 84-216 29-162 (276)
81 2o6q_A Variable lymphocyte rec 99.8 1.7E-20 5.8E-25 159.1 15.6 179 85-263 39-217 (270)
82 2o6q_A Variable lymphocyte rec 99.8 1.1E-20 3.6E-25 160.4 14.0 180 108-287 38-217 (270)
83 3rfs_A Internalin B, repeat mo 99.8 2.2E-21 7.6E-26 164.7 6.8 158 79-240 37-194 (272)
84 3rfs_A Internalin B, repeat mo 99.8 5.2E-21 1.8E-25 162.4 9.0 178 32-214 39-216 (272)
85 1h6u_A Internalin H; cell adhe 99.8 3E-20 1E-24 160.4 13.9 194 152-362 38-231 (308)
86 1h6u_A Internalin H; cell adhe 99.8 6.2E-20 2.1E-24 158.5 14.0 191 127-333 37-227 (308)
87 2xwt_C Thyrotropin receptor; s 99.8 1.7E-20 5.9E-25 156.1 8.9 198 34-237 31-236 (239)
88 4glp_A Monocyte differentiatio 99.8 5.6E-21 1.9E-25 165.5 5.9 227 131-387 64-309 (310)
89 1p9a_G Platelet glycoprotein I 99.8 7E-20 2.4E-24 156.5 11.3 156 54-216 6-161 (290)
90 1p9a_G Platelet glycoprotein I 99.8 1.8E-19 6.1E-24 154.0 13.7 202 80-288 7-208 (290)
91 4glp_A Monocyte differentiatio 99.8 3.7E-20 1.3E-24 160.3 9.4 152 177-333 143-304 (310)
92 2xwt_C Thyrotropin receptor; s 99.8 1.3E-19 4.5E-24 150.8 9.8 197 58-261 31-236 (239)
93 3m19_A Variable lymphocyte rec 99.8 3.3E-18 1.1E-22 143.3 13.4 155 59-214 36-190 (251)
94 3m19_A Variable lymphocyte rec 99.8 3.1E-18 1.1E-22 143.4 13.1 156 83-238 35-190 (251)
95 1h6t_A Internalin B; cell adhe 99.7 1E-17 3.4E-22 143.3 11.1 172 176-362 43-214 (291)
96 1h6t_A Internalin B; cell adhe 99.7 4.7E-17 1.6E-21 139.1 12.6 168 152-333 43-210 (291)
97 3sb4_A Hypothetical leucine ri 99.7 3.2E-18 1.1E-22 149.4 4.8 218 154-378 100-327 (329)
98 4ezg_A Putative uncharacterize 99.7 8.2E-18 2.8E-22 135.3 6.7 151 227-385 44-194 (197)
99 3sb4_A Hypothetical leucine ri 99.7 1.8E-17 6E-22 144.7 8.4 102 226-329 225-327 (329)
100 1m9s_A Internalin B; cell inva 99.7 8.2E-17 2.8E-21 150.6 10.6 175 176-365 40-214 (605)
101 4ezg_A Putative uncharacterize 99.7 3.7E-16 1.3E-20 125.6 12.8 151 81-239 42-193 (197)
102 1m9s_A Internalin B; cell inva 99.7 5.4E-17 1.9E-21 151.9 9.0 173 151-338 39-211 (605)
103 2o6s_A Variable lymphocyte rec 99.7 1.1E-16 3.6E-21 130.1 7.3 152 83-241 28-179 (208)
104 2o6s_A Variable lymphocyte rec 99.7 5.2E-17 1.8E-21 131.9 4.8 158 156-320 29-186 (208)
105 4ay9_X Follicle-stimulating ho 99.6 2E-16 6.7E-21 139.3 8.4 221 34-260 30-255 (350)
106 2xot_A Amphoterin-induced prot 99.6 4.2E-17 1.4E-21 144.1 4.1 176 182-361 21-202 (361)
107 2v70_A SLIT-2, SLIT homolog 2 99.6 1.3E-16 4.3E-21 130.5 4.4 152 206-361 14-166 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.6 2.1E-15 7.1E-20 123.3 11.3 132 59-191 33-165 (220)
109 2v9t_B SLIT homolog 2 protein 99.6 1.8E-15 6.1E-20 123.7 10.8 131 84-214 33-163 (220)
110 2v9t_B SLIT homolog 2 protein 99.6 1.7E-15 5.7E-20 123.8 10.5 133 58-191 32-164 (220)
111 4ay9_X Follicle-stimulating ho 99.6 8.5E-16 2.9E-20 135.2 9.0 221 58-285 30-256 (350)
112 1xeu_A Internalin C; cellular 99.6 1.7E-16 5.9E-21 133.5 4.2 170 178-363 18-187 (263)
113 3e6j_A Variable lymphocyte rec 99.6 2.5E-16 8.6E-21 129.7 4.5 152 205-361 21-172 (229)
114 2xot_A Amphoterin-induced prot 99.6 2.1E-15 7.2E-20 133.2 10.1 176 86-264 21-202 (361)
115 3un9_A NLR family member X1; l 99.6 1.3E-14 4.6E-19 127.8 14.7 185 202-387 71-285 (372)
116 3cvr_A Invasion plasmid antige 99.6 2.1E-15 7E-20 139.6 9.8 135 108-265 60-194 (571)
117 3cvr_A Invasion plasmid antige 99.6 1.8E-15 6.3E-20 140.0 9.0 187 83-297 59-252 (571)
118 1xeu_A Internalin C; cellular 99.6 4.3E-16 1.5E-20 131.0 4.1 164 155-333 19-182 (263)
119 3un9_A NLR family member X1; l 99.6 3E-14 1E-18 125.6 15.9 185 178-363 71-285 (372)
120 3e6j_A Variable lymphocyte rec 99.6 8.2E-15 2.8E-19 120.6 11.5 132 83-215 40-171 (229)
121 4fdw_A Leucine rich hypothetic 99.6 5.9E-15 2E-19 131.3 10.0 266 82-361 112-383 (401)
122 4fdw_A Leucine rich hypothetic 99.6 2E-15 7E-20 134.3 6.7 268 104-385 110-383 (401)
123 4fs7_A Uncharacterized protein 99.6 2.3E-15 7.7E-20 134.7 6.3 334 23-377 60-393 (394)
124 4fs7_A Uncharacterized protein 99.6 1.6E-15 5.5E-20 135.7 5.2 332 50-404 63-394 (394)
125 2ell_A Acidic leucine-rich nuc 99.5 3E-15 1E-19 117.0 3.4 134 250-386 23-161 (168)
126 1dce_A Protein (RAB geranylger 99.5 2E-16 6.8E-21 147.2 -4.3 193 6-217 346-547 (567)
127 2ell_A Acidic leucine-rich nuc 99.5 5.4E-14 1.9E-18 109.9 9.9 131 34-191 24-159 (168)
128 2je0_A Acidic leucine-rich nuc 99.5 6.3E-14 2.2E-18 107.1 10.0 107 34-143 17-125 (149)
129 2je0_A Acidic leucine-rich nuc 99.5 5.6E-14 1.9E-18 107.4 8.4 63 249-311 62-125 (149)
130 1dce_A Protein (RAB geranylger 99.5 9E-16 3.1E-20 142.8 -3.6 122 180-306 442-567 (567)
131 1a9n_A U2A', U2A'; complex (nu 99.5 2.8E-14 9.7E-19 112.3 3.8 108 276-386 43-154 (176)
132 2o6r_A Variable lymphocyte rec 99.4 1.6E-13 5.3E-18 108.2 5.4 129 229-361 9-137 (177)
133 1w8a_A SLIT protein; signaling 99.4 9.3E-13 3.2E-17 105.1 9.6 109 84-192 30-139 (192)
134 1w8a_A SLIT protein; signaling 99.4 7.1E-13 2.4E-17 105.8 8.5 129 37-169 11-140 (192)
135 1a9n_A U2A', U2A'; complex (nu 99.4 2.2E-13 7.5E-18 107.2 5.3 133 225-362 17-154 (176)
136 2wfh_A SLIT homolog 2 protein 99.4 1.3E-13 4.3E-18 110.1 3.7 126 230-360 13-138 (193)
137 1ds9_A Outer arm dynein; leuci 99.4 3.8E-15 1.3E-19 119.8 -5.7 133 246-386 43-186 (198)
138 4gt6_A Cell surface protein; l 99.4 3.1E-12 1.1E-16 114.3 11.8 314 54-383 59-389 (394)
139 2wfh_A SLIT homolog 2 protein 99.4 3.1E-12 1.1E-16 101.9 9.9 108 83-191 31-138 (193)
140 2o6r_A Variable lymphocyte rec 99.3 4.1E-12 1.4E-16 100.0 9.7 108 84-191 29-136 (177)
141 4gt6_A Cell surface protein; l 99.3 1E-11 3.6E-16 110.9 12.9 313 5-333 59-388 (394)
142 4b8c_D Glucose-repressible alc 99.3 3.4E-13 1.2E-17 129.5 1.7 112 79-194 220-331 (727)
143 4b8c_D Glucose-repressible alc 99.3 4E-13 1.4E-17 129.0 2.0 120 100-223 217-336 (727)
144 1ds9_A Outer arm dynein; leuci 99.3 4.5E-13 1.5E-17 107.6 -0.5 137 28-170 12-155 (198)
145 3e4g_A ATP synthase subunit S, 99.3 2.6E-11 9E-16 92.9 9.3 101 300-401 62-170 (176)
146 2ra8_A Uncharacterized protein 99.2 3.6E-10 1.2E-14 98.7 13.3 200 178-383 106-341 (362)
147 3g39_A Variable lymphocyte rec 99.2 1.4E-11 4.9E-16 96.0 3.9 105 253-361 11-115 (170)
148 3e4g_A ATP synthase subunit S, 99.1 8.6E-11 2.9E-15 90.0 7.2 87 276-362 62-154 (176)
149 4h09_A Hypothetical leucine ri 99.1 1.6E-10 5.6E-15 102.7 9.5 303 30-348 42-356 (379)
150 2r9u_A Variable lymphocyte rec 99.1 2.2E-11 7.4E-16 95.2 3.2 104 254-361 15-118 (174)
151 2ra8_A Uncharacterized protein 99.1 1.1E-09 3.8E-14 95.6 13.4 178 175-359 135-341 (362)
152 4h09_A Hypothetical leucine ri 99.1 3.4E-10 1.2E-14 100.7 9.6 306 52-373 40-357 (379)
153 3g39_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 88.0 8.3 85 83-167 30-114 (170)
154 2r9u_A Variable lymphocyte rec 99.0 6.5E-10 2.2E-14 86.8 8.3 85 83-167 33-117 (174)
155 1io0_A Tropomodulin; LRR prote 99.0 9E-09 3.1E-13 81.1 13.0 123 244-387 29-166 (185)
156 1io0_A Tropomodulin; LRR prote 99.0 1.4E-08 4.8E-13 80.0 13.9 115 219-333 28-161 (185)
157 2ifg_A High affinity nerve gro 98.8 2E-09 6.8E-14 94.5 4.7 102 256-361 13-116 (347)
158 2ifg_A High affinity nerve gro 98.8 1.4E-08 4.8E-13 89.0 8.5 89 79-168 27-116 (347)
159 3rw6_A Nuclear RNA export fact 98.1 8.7E-07 3E-11 73.3 2.8 36 298-333 169-206 (267)
160 3rw6_A Nuclear RNA export fact 98.1 1.1E-06 3.6E-11 72.8 3.0 83 320-404 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 98.1 0.0001 3.4E-09 57.6 12.8 86 248-333 38-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 98.0 0.0002 7E-09 55.9 13.0 117 269-386 35-171 (197)
163 3rfe_A Platelet glycoprotein I 94.5 0.017 6E-07 41.8 2.4 55 303-361 12-68 (130)
164 3rfe_A Platelet glycoprotein I 94.4 0.021 7.1E-07 41.4 2.5 56 278-336 11-68 (130)
165 2lz0_A Uncharacterized protein 73.9 0.75 2.6E-05 31.2 0.3 45 22-67 8-52 (100)
166 2lz0_A Uncharacterized protein 70.0 8.3 0.00028 26.0 4.8 41 51-93 13-53 (100)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.1e-42 Score=325.12 Aligned_cols=381 Identities=23% Similarity=0.250 Sum_probs=228.3
Q ss_pred cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC
Q 015457 2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81 (406)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 81 (406)
|..|.++++|++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|++++|. +....+..+..
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~ 127 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHN 127 (606)
T ss_dssp TTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTT
T ss_pred hhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCcchhcc
Confidence 5567888888888888886 455566778888888888888887555555667778888888888754 44444555677
Q ss_pred CCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCc--EEEcCCccCChhh------------
Q 015457 82 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF--YLNLNRCQLSDDG------------ 147 (406)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~------------ 147 (406)
+++|++|++++|.+.......+..+++|++|++++|.+....+..++.+++|+ .+++++|.+....
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L 207 (606)
T 3t6q_A 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccc
Confidence 77777777777776654434444577777777777777766666666666666 5666655443322
Q ss_pred ---------------------------------------------------------------hhhccCCCCccEEEecC
Q 015457 148 ---------------------------------------------------------------CEKFSKIGSLKVLNLGF 164 (406)
Q Consensus 148 ---------------------------------------------------------------~~~~~~l~~L~~L~l~~ 164 (406)
+..+..+++|+.|++++
T Consensus 208 ~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 287 (606)
T 3t6q_A 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287 (606)
T ss_dssp ECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT
T ss_pred ccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccC
Confidence 22244556677777777
Q ss_pred CccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCc-hhHHhhcCCCCCcEEeccCCCCChhH
Q 015457 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGS 243 (406)
Q Consensus 165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~ 243 (406)
|.+. .+|..+..+++|++|++++|.+....+..+..+++|+.|+++++.+.. .....+..+++|+.|++++|.++...
T Consensus 288 n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp SCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred CccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 7665 455556666777777777776665555556666666666666665442 22233455666666666666555433
Q ss_pred --HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHH-HHhhcCCCCCEEEccCCCCChHHHHhhh
Q 015457 244 --LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIK 320 (406)
Q Consensus 244 --~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 320 (406)
+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+.+..+..+.
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence 3345556666666666665555444445555556666665555543322 2244555555555555555544444455
Q ss_pred cCCCCCEEeccCCCCCChh---HHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457 321 DLSSLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 321 ~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 386 (406)
.+++|+.|++++| .+... .+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++..
T Consensus 447 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 447 GLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp TCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 5555555555555 33321 11234445555555555555555444445555555555555555544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.1e-42 Score=334.50 Aligned_cols=393 Identities=20% Similarity=0.171 Sum_probs=267.3
Q ss_pred ccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC-CC
Q 015457 5 LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LT 83 (406)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~ 83 (406)
+.++++|++|++++|. +.+..+..+..+++|++|++++|......+.. .+++|++|++++|. +.+..+..+.. ++
T Consensus 219 l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~-l~~~ip~~~~~~~~ 294 (768)
T 3rgz_A 219 LGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK-FTGEIPDFLSGACD 294 (768)
T ss_dssp CTTCCSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSE-EEESCCCCSCTTCT
T ss_pred cccCCCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCc-cCCccCHHHHhhcC
Confidence 7778888888888886 45555677888888888888887643322221 56666666666643 22222333332 36
Q ss_pred CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHH-HhcCCCCcEEEcCCccCChhhhhhcc----------
Q 015457 84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS-LSALGSLFYLNLNRCQLSDDGCEKFS---------- 152 (406)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~---------- 152 (406)
+|++|++++|.+.+..+..+.++++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+.
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 6666666666665555555666666666666666655333333 55666666666666655433333322
Q ss_pred ---------------C--CCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcC
Q 015457 153 ---------------K--IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215 (406)
Q Consensus 153 ---------------~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 215 (406)
. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 454 (768)
T 3rgz_A 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454 (768)
T ss_dssp CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc
Confidence 2 45566666666666656666677777777777777766655666677777788888877777
Q ss_pred CchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHh
Q 015457 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295 (406)
Q Consensus 216 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 295 (406)
....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+
T Consensus 455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 66666667777888888888887776666667777888888888887776556667777888888888888776667777
Q ss_pred hcCCCCCEEEccCCCCChHHHHh---------------------------------------------------------
Q 015457 296 RNFKNLRSLEICGGGLTDAGVKH--------------------------------------------------------- 318 (406)
Q Consensus 296 ~~~~~L~~L~l~~~~~~~~~~~~--------------------------------------------------------- 318 (406)
..+++|+.|++++|.+.+..+..
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 77888888888877655332221
Q ss_pred -------------hhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCC
Q 015457 319 -------------IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385 (406)
Q Consensus 319 -------------~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~ 385 (406)
+..+++|+.|++++| .+....+..++.+++|+.|++++|.+++..+..+.++++|+.|++++|+++
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred cccceecccCchhhhccccccEEECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 222467788888888 777777778888888999999999988888888888889999999999887
Q ss_pred hhhHHHHhhcCCCCccccC
Q 015457 386 ANDIKRLQSRDLPNLVSFR 404 (406)
Q Consensus 386 ~~~~~~~~~~~~~~l~~l~ 404 (406)
......+ ..++.|+.|.
T Consensus 694 g~ip~~l--~~l~~L~~L~ 710 (768)
T 3rgz_A 694 GRIPQAM--SALTMLTEID 710 (768)
T ss_dssp ECCCGGG--GGCCCCSEEE
T ss_pred CcCChHH--hCCCCCCEEE
Confidence 6444444 3556666553
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.3e-41 Score=320.54 Aligned_cols=380 Identities=21% Similarity=0.256 Sum_probs=275.7
Q ss_pred cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC
Q 015457 2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81 (406)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 81 (406)
|..|.++++|++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|++++|. +.......+..
T Consensus 74 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 151 (606)
T 3t6q_A 74 EDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFP 151 (606)
T ss_dssp TTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCC
T ss_pred hhhccCccccCeeeCCCCc-ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccC
Confidence 6678999999999999987 455566778899999999999988555445678889999999999865 44433344445
Q ss_pred CCCccEEEeccCccChhHHHhhhcCCCCC--EEEecCCCCChhh------------------------------------
Q 015457 82 LTNLKSLQISCSKVTDSGIAYLKGLQKLT--LLNLEGCPVTAAC------------------------------------ 123 (406)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~------------------------------------ 123 (406)
+++|++|++++|.+....+..+..+++|+ .|++++|.+....
T Consensus 152 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~ 231 (606)
T 3t6q_A 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231 (606)
T ss_dssp CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEE
T ss_pred CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhhee
Confidence 88999999998888877677777777777 6666666544322
Q ss_pred ---------------------------------------HHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecC
Q 015457 124 ---------------------------------------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164 (406)
Q Consensus 124 ---------------------------------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (406)
+..+..+++|++|++++|.+. ..+..+..+++|++|++++
T Consensus 232 ~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~ 310 (606)
T 3t6q_A 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSA 310 (606)
T ss_dssp CCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTT
T ss_pred chhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECcc
Confidence 223556788999999998887 4566778889999999999
Q ss_pred CccchhHHhhhcCCCCCCeEEccCCCCCh-hhhHhhhCCCCCCEEEcCCCcCCchh--HHhhcCCCCCcEEeccCCCCCh
Q 015457 165 NEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISD 241 (406)
Q Consensus 165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~ 241 (406)
|.+....+..+..+++|+.|++++|.+.. .....+..+++|+.|+++++.+.... ...+..+++|+.|++++|.+..
T Consensus 311 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp CCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred CCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence 98887777778888889999988887653 33344677888888888888776654 4556777888888888887766
Q ss_pred hHHHHhhCCCCCcEEECCCCCCChHHH-HHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHH---HH
Q 015457 242 GSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG---VK 317 (406)
Q Consensus 242 ~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~ 317 (406)
..+..+..+++|++|++++|.+..... ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+.. +.
T Consensus 391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 470 (606)
T 3t6q_A 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470 (606)
T ss_dssp ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSC
T ss_pred CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccch
Confidence 656666677777777777777665422 23556677777777777776655666666777777777777765521 13
Q ss_pred hhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457 318 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 318 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 386 (406)
.+..+++|+.|++++| .+....+..+..+++|+.|++++|++++..+..+..+++| .+++++|+++.
T Consensus 471 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 471 SLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp GGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred hhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 4566677777777777 5666556666677777777777777776666666667777 77777776664
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-42 Score=335.13 Aligned_cols=380 Identities=21% Similarity=0.172 Sum_probs=299.2
Q ss_pred cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccC-CCCccEEeecCCCCcCcCcccccc
Q 015457 2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLS 80 (406)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~ 80 (406)
|..+.++++|++|++++|... +..+.. .+++|++|++++|......+..+.. +++|++|++++|. +....+..+.
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~-~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~ 315 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFV-GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYGAVPPFFG 315 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCE-ESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-EEECCCGGGG
T ss_pred cHHHhcCCCCCEEECCCCccc-CccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-CCCccchHHh
Confidence 556788888888888888642 222211 6677777777777644344444444 3677777777643 3334455566
Q ss_pred CCCCccEEEeccCccChhHH-HhhhcCCCCCEEEecCCCCChhhHHHHhc---------------------------CCC
Q 015457 81 GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSA---------------------------LGS 132 (406)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------l~~ 132 (406)
.+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..|..+.. +++
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 66677777776666553222 33566666666666666554333333322 456
Q ss_pred CcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCC
Q 015457 133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 212 (406)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 212 (406)
|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 77777777776666777888999999999999999888888899999999999999999877788888999999999999
Q ss_pred CcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHH
Q 015457 213 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292 (406)
Q Consensus 213 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 292 (406)
|.+....+..+..+++|+.|++++|.++...+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 99987777888999999999999999988788888999999999999999987767788899999999999997764322
Q ss_pred HH----------------------------------------------------------------------hhcCCCCC
Q 015457 293 AY----------------------------------------------------------------------LRNFKNLR 302 (406)
Q Consensus 293 ~~----------------------------------------------------------------------~~~~~~L~ 302 (406)
.. +..+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 22 22357899
Q ss_pred EEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCC
Q 015457 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382 (406)
Q Consensus 303 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 382 (406)
.|++++|.+++..+..++.++.|+.|++++| .+....+..++.+++|+.|++++|++++..+..+..+++|+++++++|
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 9999999999988999999999999999999 888888899999999999999999999988999999999999999999
Q ss_pred CCCh
Q 015457 383 KVTA 386 (406)
Q Consensus 383 ~~~~ 386 (406)
+++.
T Consensus 715 ~l~g 718 (768)
T 3rgz_A 715 NLSG 718 (768)
T ss_dssp EEEE
T ss_pred cccc
Confidence 8775
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.9e-40 Score=313.13 Aligned_cols=377 Identities=22% Similarity=0.233 Sum_probs=174.5
Q ss_pred cccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCC
Q 015457 4 NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 83 (406)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 83 (406)
.|.++++|++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|++++|. +.......++.++
T Consensus 51 ~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLI 128 (606)
T ss_dssp TTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCT
T ss_pred hccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCC
Confidence 34555555555555554 333334445555555555555554333334445555555555555532 2223333455555
Q ss_pred CccEEEeccCccCh-hHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCC----CcEEEcCCccCChhhhhhccCCCCcc
Q 015457 84 NLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEKFSKIGSLK 158 (406)
Q Consensus 84 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (406)
+|++|++++|.+.. ..+..+.++++|++|++++|.+....+..++.+.+ +.++++++|.+....+..+.. .+|+
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~ 207 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLH 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceee
Confidence 55555555555443 12344555555555555555555443333333322 235555555554433333333 2677
Q ss_pred EEEecCCccch-hHHhh---------------------------------------------------------------
Q 015457 159 VLNLGFNEITD-ECLVH--------------------------------------------------------------- 174 (406)
Q Consensus 159 ~L~l~~~~~~~-~~~~~--------------------------------------------------------------- 174 (406)
.|++++|.+.+ ..+..
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L 287 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTC
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCC
Confidence 77777765431 11111
Q ss_pred ---------------hcCCCCCCeEEccCCCCChhh-------------------hHhhhCCCCCCEEEcCCCcCCchh-
Q 015457 175 ---------------LKGLTNLESLNLDSCGIGDEG-------------------LVNLTGLCNLKCLELSDTQVGSSG- 219 (406)
Q Consensus 175 ---------------~~~~~~L~~L~l~~~~~~~~~-------------------~~~~~~~~~L~~l~l~~~~~~~~~- 219 (406)
+..+++|+.|++.+|.+.... ...+..+++|+.++++++.+....
T Consensus 288 ~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 367 (606)
T 3vq2_A 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGC 367 (606)
T ss_dssp SEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEE
T ss_pred CEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcc
Confidence 112223344444443331111 001122333444444443332221
Q ss_pred -HHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHH-HHHhcCCCCCEEEccCCCCChhHHHHhhc
Q 015457 220 -LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRN 297 (406)
Q Consensus 220 -~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 297 (406)
+..+..+++|+.|++++|.++... ..+..+++|+.|++++|.+..... ..+..+++|+.|++++|.++...+..+..
T Consensus 368 ~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 446 (606)
T 3vq2_A 368 CSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446 (606)
T ss_dssp CCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred hhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC
Confidence 233334444444444444333211 223344445555555444443322 23444555555555555554444444455
Q ss_pred CCCCCEEEccCCCCChH-HHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccE
Q 015457 298 FKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376 (406)
Q Consensus 298 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 376 (406)
+++|++|++++|.+.+. .+..+..+++|+.|++++| .+....+..+..+++|+.|++++|++++..+..+..+++|++
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 55555555555555442 2334445555555555555 444444444555555555555555555544555555555555
Q ss_pred EEccCCCCC
Q 015457 377 LTLESCKVT 385 (406)
Q Consensus 377 l~l~~~~~~ 385 (406)
|++++|+++
T Consensus 526 L~l~~N~l~ 534 (606)
T 3vq2_A 526 LDCSFNRIE 534 (606)
T ss_dssp EECTTSCCC
T ss_pred EECCCCcCc
Confidence 555555554
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.1e-39 Score=307.78 Aligned_cols=352 Identities=19% Similarity=0.195 Sum_probs=288.8
Q ss_pred HHHHhcCCCCcEeeccCcccccC-----------------cccccc--CCCCccEEeecCCCCcCcCccccccCCCCccE
Q 015457 27 MKAFAGLINLVKLDLERCTRIHG-----------------GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 87 (406)
Q Consensus 27 ~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 87 (406)
|..+.++++|++|++++|..... .+..+. ++++|++|++++|.. ....+..+.++++|++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKALPEMQL 277 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-CSSCCTTTTTCSSCCE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-CccChHHHhcCCCCCE
Confidence 45688999999999999884332 677778 999999999999754 4455678899999999
Q ss_pred EEeccCc-cCh-hHHHhhhcC------CCCCEEEecCCCCChhhHH--HHhcCCCCcEEEcCCccCChhhhhhccCCCCc
Q 015457 88 LQISCSK-VTD-SGIAYLKGL------QKLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157 (406)
Q Consensus 88 L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 157 (406)
|++++|. +++ ..+..+..+ ++|++|++++|.+.. .|. .+..+++|++|++++|.+.+..+ .+..+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9999998 887 667777665 999999999999984 566 89999999999999999886666 78888999
Q ss_pred cEEEecCCccchhHHhhhcCCCC-CCeEEccCCCCChhhhHhhhCC--CCCCEEEcCCCcCCchhHHhhc-------CCC
Q 015457 158 KVLNLGFNEITDECLVHLKGLTN-LESLNLDSCGIGDEGLVNLTGL--CNLKCLELSDTQVGSSGLRHLS-------GLT 227 (406)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~l~-------~~~ 227 (406)
+.|++++|.+. .+|..+..+++ |+.|++++|.+. ..+..+... ++|+.|++++|.+....+..+. .++
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 99999999988 77777888999 999999999887 444445443 4899999999998876666666 678
Q ss_pred CCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcC-------CCCCEEEccCCCCChhHHHHhh--cC
Q 015457 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL-------TGLTHLDLFGARITDSGAAYLR--NF 298 (406)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~ 298 (406)
+|+.|++++|.++......+..+++|+.|++++|.++..+...+... ++|+.|++++|.++.. +..+. .+
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l 512 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTL 512 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTC
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccC
Confidence 99999999999987666667779999999999999986543333332 2899999999999854 45554 89
Q ss_pred CCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCC-----CCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCC
Q 015457 299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-----NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 373 (406)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 373 (406)
++|++|++++|.+++ .+..+..+++|+.|++++|. .+....+..+..+++|+.|++++|.++.. +..+. ++
T Consensus 513 ~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~~--~~ 588 (636)
T 4eco_A 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKIT--PN 588 (636)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--TT
T ss_pred CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc-CHhHh--Cc
Confidence 999999999999998 47778889999999995431 45666677888999999999999999653 33333 79
Q ss_pred ccEEEccCCCCChhh
Q 015457 374 LRSLTLESCKVTAND 388 (406)
Q Consensus 374 L~~l~l~~~~~~~~~ 388 (406)
|+.|++++|++....
T Consensus 589 L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 589 ISVLDIKDNPNISID 603 (636)
T ss_dssp CCEEECCSCTTCEEE
T ss_pred CCEEECcCCCCcccc
Confidence 999999999877643
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-39 Score=308.78 Aligned_cols=379 Identities=21% Similarity=0.185 Sum_probs=300.1
Q ss_pred cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC
Q 015457 2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81 (406)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 81 (406)
|..|.++++|++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|++++|.......+..+.+
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~ 151 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151 (606)
T ss_dssp TTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT
T ss_pred HHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhh
Confidence 5678999999999999997 566667889999999999999998655555679999999999999976443345678899
Q ss_pred CCCccEEEeccCccChhHHHhhhcCCC----CCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChh-hh--------
Q 015457 82 LTNLKSLQISCSKVTDSGIAYLKGLQK----LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD-GC-------- 148 (406)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-------- 148 (406)
+++|++|++++|.+....+..+..+++ +.+++++++.+....+..+.. .+|+++++++|.+... .+
T Consensus 152 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~ 230 (606)
T 3vq2_A 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAG 230 (606)
T ss_dssp CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTT
T ss_pred cCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccc
Confidence 999999999999988766655555444 458999999998875555443 3788888877754310 00
Q ss_pred ----------------------------------------------------------------------hhccCCCCcc
Q 015457 149 ----------------------------------------------------------------------EKFSKIGSLK 158 (406)
Q Consensus 149 ----------------------------------------------------------------------~~~~~l~~L~ 158 (406)
..+..+++|+
T Consensus 231 L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~ 310 (606)
T 3vq2_A 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ 310 (606)
T ss_dssp CEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCS
T ss_pred cccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCC
Confidence 0122334555
Q ss_pred EEEecCCccchhHHh--------------------hhcCCCCCCeEEccCCCCChhh--hHhhhCCCCCCEEEcCCCcCC
Q 015457 159 VLNLGFNEITDECLV--------------------HLKGLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVG 216 (406)
Q Consensus 159 ~L~l~~~~~~~~~~~--------------------~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~ 216 (406)
.|++++|.+. .+|. .+..+++|++|++++|.+.... +..+..+++|+.|+++++.+.
T Consensus 311 ~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 311 SLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389 (606)
T ss_dssp EEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred EEEcccccCc-ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc
Confidence 5555555542 2221 2345677788888877765442 567788999999999999876
Q ss_pred chhHHhhcCCCCCcEEeccCCCCChhHH-HHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChh-HHHH
Q 015457 217 SSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAY 294 (406)
Q Consensus 217 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~ 294 (406)
... ..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+++. .+..
T Consensus 390 ~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 468 (606)
T 3vq2_A 390 IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468 (606)
T ss_dssp EEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred cch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh
Confidence 643 667889999999999998876555 5677899999999999999887667788999999999999998863 5667
Q ss_pred hhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCC-C
Q 015457 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK-N 373 (406)
Q Consensus 295 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~ 373 (406)
+..+++|++|++++|.+++..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|+++.... .+..++ +
T Consensus 469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~-~~~~l~~~ 546 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKG-ILQHFPKS 546 (606)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSCCCCEES-CGGGSCTT
T ss_pred hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCcCcccCH-hHhhhccc
Confidence 888999999999999999987888999999999999999 7888878889999999999999999986443 377776 5
Q ss_pred ccEEEccCCCCCh
Q 015457 374 LRSLTLESCKVTA 386 (406)
Q Consensus 374 L~~l~l~~~~~~~ 386 (406)
|+++++++|++..
T Consensus 547 L~~l~l~~N~~~c 559 (606)
T 3vq2_A 547 LAFFNLTNNSVAC 559 (606)
T ss_dssp CCEEECCSCCCCC
T ss_pred CcEEEccCCCccc
Confidence 9999999999875
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.3e-38 Score=304.93 Aligned_cols=142 Identities=23% Similarity=0.179 Sum_probs=101.2
Q ss_pred ccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCC
Q 015457 3 ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 82 (406)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 82 (406)
..|.++++|++|++++|. +....+..|.++++|++|++++|.........+..+++|++|++++|. +....+..+..+
T Consensus 43 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 120 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQ 120 (680)
T ss_dssp GGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTC
T ss_pred HHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHcccc
Confidence 457888889999998886 455566778888888888888876443333457788888888888754 455555667778
Q ss_pred CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHh--cCCCCcEEEcCCccCChh
Q 015457 83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS--ALGSLFYLNLNRCQLSDD 146 (406)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~ 146 (406)
++|++|++++|.+....+..+.++++|++|++++|.+.+..+..+. .+++|++|++++|.+...
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc
Confidence 8888888888777766566667777888888877777666555543 346677777776655443
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=305.59 Aligned_cols=377 Identities=21% Similarity=0.257 Sum_probs=221.8
Q ss_pred cccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCC
Q 015457 4 NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 83 (406)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 83 (406)
.|.++++|++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|+++++. +.......++.++
T Consensus 47 ~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCT
T ss_pred HhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc-cccCCCccccccc
Confidence 46667777777777765 444445566677777777777766444334556667777777777643 3333333466777
Q ss_pred CccEEEeccCccChh-HHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCC----cEEEcCCccCChhhhhhc-------
Q 015457 84 NLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL----FYLNLNRCQLSDDGCEKF------- 151 (406)
Q Consensus 84 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~~~------- 151 (406)
+|++|++++|.+... .+..+.++++|++|++++|.+....+..+..+++| +++++++|.+....+..+
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 777777777766542 24556677777777777776666555555555444 556665554443322222
Q ss_pred --------------------------------------------------------------------------cCCCCc
Q 015457 152 --------------------------------------------------------------------------SKIGSL 157 (406)
Q Consensus 152 --------------------------------------------------------------------------~~l~~L 157 (406)
..+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 223444
Q ss_pred cEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHh-------------------hhCCCCCCEEEcCCCcCCch
Q 015457 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-------------------LTGLCNLKCLELSDTQVGSS 218 (406)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------~~~~~~L~~l~l~~~~~~~~ 218 (406)
+.++++++.+. .+|..+..+ +|++|++.+|.+....... ...+++|+.|+++++.+...
T Consensus 285 ~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~ 362 (570)
T 2z63_A 285 SSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362 (570)
T ss_dssp SEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred cEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcc
Confidence 55555544443 233333333 4444444444333111100 02344555555555554433
Q ss_pred h--HHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHH-HHHhcCCCCCEEEccCCCCChhHHHHh
Q 015457 219 G--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYL 295 (406)
Q Consensus 219 ~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~ 295 (406)
. +..+..+++|+.|++++|.+...... +..+++|++|++++|.+..... ..+..+++|+.|++++|.+....+..+
T Consensus 363 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 441 (570)
T 2z63_A 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441 (570)
T ss_dssp EEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh
Confidence 2 23445556666666666655443222 5556666666666665554322 345566777777777777666555666
Q ss_pred hcCCCCCEEEccCCCCC-hHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCc
Q 015457 296 RNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374 (406)
Q Consensus 296 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 374 (406)
..+++|++|++++|.+. +..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 67777777777777765 233455666777777777777 6666656667777777777777777777666666777777
Q ss_pred cEEEccCCCCCh
Q 015457 375 RSLTLESCKVTA 386 (406)
Q Consensus 375 ~~l~l~~~~~~~ 386 (406)
+.+++++|++..
T Consensus 521 ~~L~l~~N~~~~ 532 (570)
T 2z63_A 521 QKIWLHTNPWDC 532 (570)
T ss_dssp CEEECCSSCBCC
T ss_pred cEEEecCCcccC
Confidence 778887777654
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-38 Score=303.58 Aligned_cols=231 Identities=22% Similarity=0.235 Sum_probs=144.8
Q ss_pred CCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEE
Q 015457 9 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 88 (406)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 88 (406)
+++++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|++++|. +.......+..+++|++|
T Consensus 25 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEE
Confidence 578888888876 455555667788888888888876555455567778888888888753 454555567788888888
Q ss_pred EeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhcc--CCCCccEEEecCCc
Q 015457 89 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS--KIGSLKVLNLGFNE 166 (406)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~ 166 (406)
++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+. ..++|+.|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 8888877766656677888888888888877776666677788888888888877665554443 34677777777766
Q ss_pred cchhHHhhhcCC---------------------------CCCCeEEccCCCCChhhhHhhhCCC--CCCEEEcCCCcCCc
Q 015457 167 ITDECLVHLKGL---------------------------TNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELSDTQVGS 217 (406)
Q Consensus 167 ~~~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~ 217 (406)
+.+..+..+..+ ++|+.|+++++.+....+..+..++ +|+.|+++++.+..
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 554333322211 3344444444444433333333332 25555555554444
Q ss_pred hhHHhhcCCCCCcEEeccCCCCCh
Q 015457 218 SGLRHLSGLTNLESINLSFTGISD 241 (406)
Q Consensus 218 ~~~~~l~~~~~L~~L~l~~~~~~~ 241 (406)
..+..++.+++|+.|++++|.+..
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSE
T ss_pred cCcccccCcccccEeeCCCCccCc
Confidence 333444444455555554444443
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-38 Score=302.91 Aligned_cols=342 Identities=17% Similarity=0.202 Sum_probs=281.3
Q ss_pred ccccccCCCCccEEeecCCCCcCcC-----------------cccccc--CCCCccEEEeccCccChhHHHhhhcCCCCC
Q 015457 50 GLVNLKGLMKLESLNIKWCNCITDS-----------------DMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110 (406)
Q Consensus 50 ~~~~~~~~~~L~~L~l~~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 110 (406)
.+..+.++++|++|++++|. ++.. .+..+. ++++|++|++++|.+.+..+..+.++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 45568889999999999976 5553 566777 999999999999998887888899999999
Q ss_pred EEEecCCC-CCh-hhHHHHhcC------CCCcEEEcCCccCChhhhh--hccCCCCccEEEecCCccchhHHhhhcCCCC
Q 015457 111 LLNLEGCP-VTA-ACLDSLSAL------GSLFYLNLNRCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180 (406)
Q Consensus 111 ~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 180 (406)
+|++++|. +++ ..|..+..+ ++|++|++++|.+. ..+. .+..+++|+.|++++|.+.+.+| .+..+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 99999998 887 778888776 99999999999998 5666 89999999999999999986677 7888999
Q ss_pred CCeEEccCCCCChhhhHhhhCCCC-CCEEEcCCCcCCchhHHhhcCC--CCCcEEeccCCCCChhHHHHhh-------CC
Q 015457 181 LESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTGISDGSLRKLA-------GL 250 (406)
Q Consensus 181 L~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~-------~~ 250 (406)
|+.|++++|.+. ..+..+..+++ |+.|++++|.+.. .+..+... ++|+.|++++|.++...+..+. .+
T Consensus 355 L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 355 LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 999999999876 44556788888 9999999999874 34455544 4899999999999887666666 67
Q ss_pred CCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcC-------CCCCEEEccCCCCChHHHHhhh--c
Q 015457 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-------KNLRSLEICGGGLTDAGVKHIK--D 321 (406)
Q Consensus 251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~ 321 (406)
++|+.|++++|.++..+...+..+++|+.|++++|.++......+... ++|++|++++|.++.. +..+. .
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~ 511 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATT 511 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTT
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-Chhhhhcc
Confidence 899999999999998766677789999999999999985443333333 2999999999999954 55565 8
Q ss_pred CCCCCEEeccCCCCCChhHHHHHHcCCCccEEEee------CCccChhHHHhcCCCCCccEEEccCCCCChhhHHHHhhc
Q 015457 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS------NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 395 (406)
Q Consensus 322 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~------~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~ 395 (406)
+++|+.|++++| .+.. .+..+..+++|+.|+++ +|.+.+..+..+..+++|++|++++|++.. +. ..
T Consensus 512 l~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--ip---~~ 584 (636)
T 4eco_A 512 LPYLVGIDLSYN-SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK--VN---EK 584 (636)
T ss_dssp CTTCCEEECCSS-CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB--CC---SC
T ss_pred CCCcCEEECCCC-CCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCc--cC---Hh
Confidence 999999999999 6776 56678899999999995 566777777788899999999999999843 21 11
Q ss_pred CCCCccccC
Q 015457 396 DLPNLVSFR 404 (406)
Q Consensus 396 ~~~~l~~l~ 404 (406)
-+++|+.|.
T Consensus 585 ~~~~L~~L~ 593 (636)
T 4eco_A 585 ITPNISVLD 593 (636)
T ss_dssp CCTTCCEEE
T ss_pred HhCcCCEEE
Confidence 235666554
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=305.53 Aligned_cols=389 Identities=21% Similarity=0.215 Sum_probs=285.5
Q ss_pred CCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEE
Q 015457 9 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 88 (406)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 88 (406)
+++++|++++|. ++...+..|.++++|++|++++|......+..+..+++|++|++++|. ++...+..+..+++|++|
T Consensus 28 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCc-cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccc
Confidence 579999999997 556666678999999999999997555445678999999999999865 555666788999999999
Q ss_pred EeccCccChhHHHhhhcCCCCCEEEecCCCCChh-hHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCc----cEEEec
Q 015457 89 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL----KVLNLG 163 (406)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~ 163 (406)
+++++.+.......+.++++|++|++++|.+... .|..+..+++|++|++++|.+....+..++.+++| +.++++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 9999998876655688999999999999988763 47889999999999999999887666666655555 667776
Q ss_pred CCccchhHHhh---------------------------------------------------------------------
Q 015457 164 FNEITDECLVH--------------------------------------------------------------------- 174 (406)
Q Consensus 164 ~~~~~~~~~~~--------------------------------------------------------------------- 174 (406)
+|.+....+..
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 66554332222
Q ss_pred ------------hcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHh-------------------h
Q 015457 175 ------------LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH-------------------L 223 (406)
Q Consensus 175 ------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-------------------l 223 (406)
+..+++|+.+++.++.+.. .+..+..+ +|+.+++.++.+....... .
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc
Confidence 2334555555555554432 12223333 4555555554443211100 0
Q ss_pred cCCCCCcEEeccCCCCChhH--HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHH-HHhhcCCC
Q 015457 224 SGLTNLESINLSFTGISDGS--LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKN 300 (406)
Q Consensus 224 ~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~ 300 (406)
..+++|+.|++++|.++... +..+..+++|+.|++++|.+...+.. +..+++|++|++++|.+....+ ..+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 34567777777777766532 45566778888888888877665433 6677888888888887765433 35678899
Q ss_pred CCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCC-hhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEc
Q 015457 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379 (406)
Q Consensus 301 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l 379 (406)
|++|++++|.+.+..+..+..+++|+.|++++| .+. ...+..+..+++|+.|++++|.+++..+..+..+++|++|++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 999999999888777777888999999999999 454 345566778899999999999999877888889999999999
Q ss_pred cCCCCChhhHHHHhhcCCCCccccCC
Q 015457 380 ESCKVTANDIKRLQSRDLPNLVSFRP 405 (406)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~l~~ 405 (406)
++|++.......+ ..+++|+.+..
T Consensus 502 ~~n~l~~~~~~~~--~~l~~L~~L~l 525 (570)
T 2z63_A 502 ASNQLKSVPDGIF--DRLTSLQKIWL 525 (570)
T ss_dssp CSSCCSCCCTTTT--TTCTTCCEEEC
T ss_pred CCCcCCCCCHHHh--hcccCCcEEEe
Confidence 9999886433333 46777776643
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.8e-38 Score=286.77 Aligned_cols=361 Identities=18% Similarity=0.201 Sum_probs=191.0
Q ss_pred CCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccC-ccccccCCCCccEEeecCCCCcCcCccccccCCCCccE
Q 015457 9 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 87 (406)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 87 (406)
++|++|++++|. +....+..|.++++|++|++++|..... .+..+..+++|++|++++|. +....+..+..+++|++
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCE
Confidence 345555555554 2333344455555555555555443211 12334555555555555532 23333444455555555
Q ss_pred EEeccCccChhHHHh--hhcCCCCCEEEecCCCCChhhHHH-HhcCCCCcEEEcCCccCChhhhhhccCC--CCccEEEe
Q 015457 88 LQISCSKVTDSGIAY--LKGLQKLTLLNLEGCPVTAACLDS-LSALGSLFYLNLNRCQLSDDGCEKFSKI--GSLKVLNL 162 (406)
Q Consensus 88 L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l 162 (406)
|++++|.+.+..+.. +.++++|++|++++|.+....|.. +..+++|++|++++|.+....+..+..+ .+++.+++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 555555554433332 455555555555555554443332 4455555555555555544444333332 34555555
Q ss_pred cCCccchhHHhh--------hcCCCCCCeEEccCCCCChhhhHhhhC---CCCCCEEEcCCCcCCchhHHhhcCCCCCcE
Q 015457 163 GFNEITDECLVH--------LKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLES 231 (406)
Q Consensus 163 ~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 231 (406)
+++.+....+.. +..+++|+.|++++|.+....+..+.. .++|+.++++++........
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------- 257 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---------- 257 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT----------
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc----------
Confidence 555443211111 112344555555555444433333322 14444444444432111000
Q ss_pred EeccCCCCChhHHHHhh--CCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCC
Q 015457 232 INLSFTGISDGSLRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309 (406)
Q Consensus 232 L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 309 (406)
...+.......+. ..++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 258 ----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 258 ----HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp ----CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ----hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 0000000000111 2356777777777776655556666777777777777777665666667777777777777
Q ss_pred CCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 310 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 386 (406)
.+.+..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.++......+..+++|++|++++|++..
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 777666666677777777777777 6666656666777777777777777776555566677777777777777655
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-37 Score=289.95 Aligned_cols=179 Identities=19% Similarity=0.181 Sum_probs=108.1
Q ss_pred CCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHH---hhCCCCCcEEECCCCCCChHHH--HHHhcCCCCC
Q 015457 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTGL--AALTSLTGLT 278 (406)
Q Consensus 204 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~ 278 (406)
+|+.++++++.+...+...+..+++|+.|++++|.+++..+.. ++.+++|+.|++++|.++.... ..+..+++|+
T Consensus 311 ~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~ 390 (549)
T 2z81_A 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390 (549)
T ss_dssp TCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred cceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence 3444445444444333333345666777777777666544332 4456677777777776665432 3456666777
Q ss_pred EEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHH-----------------hhhcCCCCCEEeccCCCCCChhHH
Q 015457 279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK-----------------HIKDLSSLTLLNLSQNCNLTDKTL 341 (406)
Q Consensus 279 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----------------~~~~~~~L~~L~l~~~~~~~~~~~ 341 (406)
.|++++|.++.. +..+..+++|++|++++|.++..... ....+++|++|++++| .+.....
T Consensus 391 ~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~ 468 (549)
T 2z81_A 391 SLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD 468 (549)
T ss_dssp EEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred EEECCCCCCccC-ChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC
Confidence 777777666532 23344455555555555554432110 0135677888888887 5553322
Q ss_pred HHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457 342 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 342 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 386 (406)
...+++|+.|++++|++++..+..+..+++|+.+++++|++..
T Consensus 469 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 469 --ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp --GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred --cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 3567888888888888887666677788888888888888765
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.2e-37 Score=286.89 Aligned_cols=371 Identities=18% Similarity=0.177 Sum_probs=265.9
Q ss_pred CcccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCcccccc
Q 015457 1 MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 80 (406)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 80 (406)
||..+. ++|++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|++++|. ++..+ ..
T Consensus 15 ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp-~~-- 87 (520)
T 2z7x_B 15 VPKDLS--QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKIS-CH-- 87 (520)
T ss_dssp CCCSCC--TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEE-CC--
T ss_pred cccccc--ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecC-cc--
Confidence 355554 789999999987 556667789999999999999988655556678899999999999864 44322 22
Q ss_pred CCCCccEEEeccCccChh-HHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCC--cEEEcCCccC--ChhhhhhccC--
Q 015457 81 GLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL--FYLNLNRCQL--SDDGCEKFSK-- 153 (406)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~-- 153 (406)
.+++|++|++++|.+... .+..+.++++|++|++++|.+... .+..+++| +++++.+|.+ ....+..+..
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccccccccccccccccc
Confidence 789999999999988763 356788899999999999888763 45666777 8888888766 3222222222
Q ss_pred ------------------------CCCccEEEec------------------------------CCccchhHHhhh---c
Q 015457 154 ------------------------IGSLKVLNLG------------------------------FNEITDECLVHL---K 176 (406)
Q Consensus 154 ------------------------l~~L~~L~l~------------------------------~~~~~~~~~~~~---~ 176 (406)
+++|+.++++ ++.+.+..+..+ .
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence 2333333333 333222111111 0
Q ss_pred CCCCCCeEEccCCCCChhhhHhh-----hCCC--------------------------CCCEEEcCCCcCCchhHHhhcC
Q 015457 177 GLTNLESLNLDSCGIGDEGLVNL-----TGLC--------------------------NLKCLELSDTQVGSSGLRHLSG 225 (406)
Q Consensus 177 ~~~~L~~L~l~~~~~~~~~~~~~-----~~~~--------------------------~L~~l~l~~~~~~~~~~~~l~~ 225 (406)
..++|++|++++|.+.+..+..+ ..++ +|+.|+++++.+.... ....
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~ 322 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSK 322 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSS
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhh
Confidence 12355566655554432222222 3333 4555555555543321 1257
Q ss_pred CCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHH--HHHHhcCCCCCEEEccCCCCCh-hHHHHhhcCCCCC
Q 015457 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--LAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLR 302 (406)
Q Consensus 226 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~ 302 (406)
+++|+.|++++|.+++..+..+..+++|++|++++|.+++.+ +..+..+++|+.|++++|.+.. .....+..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 889999999999998877777888999999999999999743 3668899999999999999987 4444577889999
Q ss_pred EEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCC
Q 015457 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382 (406)
Q Consensus 303 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 382 (406)
+|++++|.+++..+..++ ++|+.|++++| .+. ..+..+..+++|+.|++++|+++......+..+++|+++++++|
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCC-ccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 999999999876555443 79999999999 677 44555568999999999999998765556788999999999999
Q ss_pred CCChh
Q 015457 383 KVTAN 387 (406)
Q Consensus 383 ~~~~~ 387 (406)
++.+.
T Consensus 479 ~~~c~ 483 (520)
T 2z7x_B 479 PWDCS 483 (520)
T ss_dssp CBCCC
T ss_pred CCccc
Confidence 98763
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=313.02 Aligned_cols=379 Identities=21% Similarity=0.234 Sum_probs=210.6
Q ss_pred cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcC-cccccc
Q 015457 2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS-DMKPLS 80 (406)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~ 80 (406)
|..|.++++|++|++++|.....+.+..|.++++|++|++++|......+..+..+++|++|++++|...... ....+.
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 5667888888888888886555555677888888888888888765555677888888888888886433211 222377
Q ss_pred CCCCccEEEeccCccChhHH-HhhhcCCCCCEEEecCCCCChhhHHHHhcC--CCCcEEEcCCccCChhhhhhccCC---
Q 015457 81 GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKI--- 154 (406)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l--- 154 (406)
.+++|++|++++|.+....+ ..+.++++|++|++++|.+....+..+..+ ++|+.+++++|.+....+..+..+
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence 88888888888888766543 467888888888888887766555544443 455555555544443332222222
Q ss_pred -----------------------------------------------------------------CCccEEEecCCccch
Q 015457 155 -----------------------------------------------------------------GSLKVLNLGFNEITD 169 (406)
Q Consensus 155 -----------------------------------------------------------------~~L~~L~l~~~~~~~ 169 (406)
++|+.|++++|.+..
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 234444444444433
Q ss_pred hHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhC
Q 015457 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249 (406)
Q Consensus 170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 249 (406)
..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..
T Consensus 281 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 360 (844)
T 3j0a_A 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360 (844)
T ss_dssp ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS
T ss_pred cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC
Confidence 33333444444455555444444443444444445555555544444333334444445555555554444333333444
Q ss_pred CCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCC--------------------hh-HHHHhhcCCCCCEEEccC
Q 015457 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT--------------------DS-GAAYLRNFKNLRSLEICG 308 (406)
Q Consensus 250 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------~~-~~~~~~~~~~L~~L~l~~ 308 (406)
+++|+.|++++|.++... .+++|+.+.+++|.++ .. ....+..+++|+.|++++
T Consensus 361 l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~ 435 (844)
T 3j0a_A 361 LEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435 (844)
T ss_dssp CCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred CCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence 445555555544443311 1222333333222222 10 112233556666666666
Q ss_pred CCCChHHHH-hhhcCCCCCEEeccCCCCCCh-----hHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCC
Q 015457 309 GGLTDAGVK-HIKDLSSLTLLNLSQNCNLTD-----KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382 (406)
Q Consensus 309 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 382 (406)
|.+.+.... .+..+++|+.|++++| .+.. ..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus 436 N~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 514 (844)
T 3j0a_A 436 NRFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514 (844)
T ss_dssp CCCCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred CcccccccccccccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC
Confidence 655533211 1223455555555555 3321 11123445666777777777766666666667777777777777
Q ss_pred CCCh
Q 015457 383 KVTA 386 (406)
Q Consensus 383 ~~~~ 386 (406)
+++.
T Consensus 515 ~l~~ 518 (844)
T 3j0a_A 515 RLTV 518 (844)
T ss_dssp CCSS
T ss_pred CCCc
Confidence 6654
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-37 Score=300.07 Aligned_cols=351 Identities=18% Similarity=0.175 Sum_probs=274.4
Q ss_pred HHHHhcCCCCcEeeccCcccccC-----------------cccccc--CCCCccEEeecCCCCcCcCccccccCCCCccE
Q 015457 27 MKAFAGLINLVKLDLERCTRIHG-----------------GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 87 (406)
Q Consensus 27 ~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 87 (406)
|..+.++++|++|++++|..... .|..+. .+++|++|++++|.. ....+..+.++++|++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQS 519 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSCCE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCCCE
Confidence 45688899999999999874431 566666 899999999998754 3445678889999999
Q ss_pred EEeccCc-cCh-hHHHhhhcC-------CCCCEEEecCCCCChhhHH--HHhcCCCCcEEEcCCccCChhhhhhccCCCC
Q 015457 88 LQISCSK-VTD-SGIAYLKGL-------QKLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 156 (406)
Q Consensus 88 L~l~~~~-~~~-~~~~~~~~l-------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 156 (406)
|++++|. +++ ..+..+..+ ++|+.|++++|.+.. .|. .+..+++|++|++++|.+. ..+ .+..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999997 886 566555544 499999999999884 566 7889999999999999988 445 7888999
Q ss_pred ccEEEecCCccchhHHhhhcCCCC-CCeEEccCCCCChhhhHhhhCCC--CCCEEEcCCCcCCchhHH---hhc--CCCC
Q 015457 157 LKVLNLGFNEITDECLVHLKGLTN-LESLNLDSCGIGDEGLVNLTGLC--NLKCLELSDTQVGSSGLR---HLS--GLTN 228 (406)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~~---~l~--~~~~ 228 (406)
|+.|++++|.+. .+|..+..+++ |+.|++++|.+. ..+..+...+ +|+.|++++|.+....+. .+. .+++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 999999999988 77777888888 999999999887 3344444443 499999999987653321 112 3458
Q ss_pred CcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhc-------CCCCCEEEccCCCCChhHHHHhh--cCC
Q 015457 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-------LTGLTHLDLFGARITDSGAAYLR--NFK 299 (406)
Q Consensus 229 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~ 299 (406)
|+.|++++|.++......+..+++|+.|++++|.+...+...+.. +++|+.|++++|.++.. +..+. .++
T Consensus 675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~ 753 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLP 753 (876)
T ss_dssp EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCT
T ss_pred cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCC
Confidence 999999999998765556668999999999999988654333322 23899999999999853 45554 899
Q ss_pred CCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCC-----CCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCc
Q 015457 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-----NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374 (406)
Q Consensus 300 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 374 (406)
+|+.|++++|.+.+. +..+..+++|+.|++++|. .+....+..+..+++|+.|++++|.+.. .+..+ .++|
T Consensus 754 ~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-Ip~~l--~~~L 829 (876)
T 4ecn_A 754 YLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQL 829 (876)
T ss_dssp TCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCC--CSSS
T ss_pred CcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc-cCHhh--cCCC
Confidence 999999999999884 6678889999999998732 4556667788899999999999999854 33333 3699
Q ss_pred cEEEccCCCCChhh
Q 015457 375 RSLTLESCKVTAND 388 (406)
Q Consensus 375 ~~l~l~~~~~~~~~ 388 (406)
+.|++++|++....
T Consensus 830 ~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 830 YILDIADNPNISID 843 (876)
T ss_dssp CEEECCSCTTCEEE
T ss_pred CEEECCCCCCCccC
Confidence 99999999986643
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.3e-37 Score=286.98 Aligned_cols=388 Identities=17% Similarity=0.122 Sum_probs=252.4
Q ss_pred CCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEE
Q 015457 9 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 88 (406)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 88 (406)
++|++|++++|. ++...+..|.++++|++|++++|......+..+..+++|++|++++|. +....+..++.+++|++|
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEE
Confidence 578888888886 455555667888888888888887554444567888888888888753 555555667788888888
Q ss_pred EeccCccChh-HHHhhhcCCCCCEEEecCCC-CChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCc
Q 015457 89 QISCSKVTDS-GIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166 (406)
Q Consensus 89 ~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (406)
++++|.+... .+..+.++++|++|++++|. +....+..+..+++|++|++++|.+....+..+..+++|+.|+++++.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 8888877643 23457778888888888886 444434567778888888888888877777777777888888888777
Q ss_pred cchhHHhhhcCCCCCCeEEccCCCCChhh---hHhhhCCCCCCEEEcCCCcCCchhHH----------------------
Q 015457 167 ITDECLVHLKGLTNLESLNLDSCGIGDEG---LVNLTGLCNLKCLELSDTQVGSSGLR---------------------- 221 (406)
Q Consensus 167 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~---------------------- 221 (406)
........+..+++|++|++++|.+.... ......+++|+.+++.++.+....+.
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 65333333456777777777777654321 01111223333443333322211110
Q ss_pred -----------------------------------------hhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCC
Q 015457 222 -----------------------------------------HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260 (406)
Q Consensus 222 -----------------------------------------~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 260 (406)
.....++|+.++++++.+.......+..+++|+.|++++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC
Confidence 011234677777777776654444445789999999999
Q ss_pred CCCChHHHHH---HhcCCCCCEEEccCCCCChhHH--HHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCC
Q 015457 261 RQITDTGLAA---LTSLTGLTHLDLFGARITDSGA--AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335 (406)
Q Consensus 261 ~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (406)
|.+.+..+.. +..+++|+.|++++|.++.... ..+..+++|++|++++|.++.. +..+..+++|++|++++| .
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N-~ 421 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSST-G 421 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTS-C
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCC-C
Confidence 9998864332 5678899999999999987643 4578899999999999988854 555666778888888877 4
Q ss_pred CChhHHHH-----------------HHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCChhhHHHHhhcCCC
Q 015457 336 LTDKTLEL-----------------ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 398 (406)
Q Consensus 336 ~~~~~~~~-----------------l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 398 (406)
+....... ...+++|+.|++++|+++.... ...+++|++|++++|+++......+ ..++
T Consensus 422 l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~ 497 (549)
T 2z81_A 422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIF--DRLT 497 (549)
T ss_dssp CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGG--GGCT
T ss_pred cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHH--hcCc
Confidence 43221100 1145566666666666553221 2345667777777776664322222 2455
Q ss_pred CccccC
Q 015457 399 NLVSFR 404 (406)
Q Consensus 399 ~l~~l~ 404 (406)
+|+.+.
T Consensus 498 ~L~~L~ 503 (549)
T 2z81_A 498 SLQKIW 503 (549)
T ss_dssp TCCEEE
T ss_pred ccCEEE
Confidence 555543
No 19
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=3.6e-35 Score=269.94 Aligned_cols=393 Identities=23% Similarity=0.278 Sum_probs=302.3
Q ss_pred CCCCceeeccCCccCCHHHH-HHHhcCCCCcEeeccCcccccC----ccccccCCCCccEEeecCCCCcCcCcccccc-C
Q 015457 8 LSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKWCNCITDSDMKPLS-G 81 (406)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~ 81 (406)
.++|++|+++++. ++.... ..+..+++|++|++++|..... .+..+..+++|++|++++|. +.+.....+. .
T Consensus 2 ~~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred Cccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 3678999999887 455544 4488999999999999984432 23456788999999999865 4433333332 4
Q ss_pred CC----CccEEEeccCccChh----HHHhhhcCCCCCEEEecCCCCChhhHHHHhc-----CCCCcEEEcCCccCChhh-
Q 015457 82 LT----NLKSLQISCSKVTDS----GIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-----LGSLFYLNLNRCQLSDDG- 147 (406)
Q Consensus 82 ~~----~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~- 147 (406)
++ +|++|++++|.+.+. .+..+..+++|++|++++|.+....+..+.. .++|++|++++|.+....
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 44 799999999998853 3677889999999999999987655554432 568999999999988754
Q ss_pred ---hhhccCCCCccEEEecCCccchhHHhhhc-----CCCCCCeEEccCCCCChhh----hHhhhCCCCCCEEEcCCCcC
Q 015457 148 ---CEKFSKIGSLKVLNLGFNEITDECLVHLK-----GLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQV 215 (406)
Q Consensus 148 ---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~ 215 (406)
+..+..+++|+.|++++|.+....+..+. ..++|+.|++++|.++... +..+..+++|+.|+++++.+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 44566779999999999998765444442 3679999999999887643 55567789999999999988
Q ss_pred CchhHHhh-----cCCCCCcEEeccCCCCChhH----HHHhhCCCCCcEEECCCCCCChHHHHHHhc-----CCCCCEEE
Q 015457 216 GSSGLRHL-----SGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLAALTS-----LTGLTHLD 281 (406)
Q Consensus 216 ~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~ 281 (406)
.......+ ..+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+.+...+.. .++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 76543322 35899999999999998863 455667899999999999998766555543 36999999
Q ss_pred ccCCCCChh----HHHHhhcCCCCCEEEccCCCCChHHHHhhhc-----CCCCCEEeccCCCCCCh----hHHHHHHcCC
Q 015457 282 LFGARITDS----GAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-----LSSLTLLNLSQNCNLTD----KTLELISGLT 348 (406)
Q Consensus 282 l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~----~~~~~l~~~~ 348 (406)
+++|.++.. .+..+..+++|++|++++|.+.+.++..+.. .++|+.|++++| .+.. ..+..+..++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANH 398 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCC
Confidence 999999875 3455677899999999999998887766653 689999999999 7886 5667788899
Q ss_pred CccEEEeeCCccChhHHHhcC-----CCCCccEEEccCCCCChhhHHHH--hhcCCCCcccc
Q 015457 349 GLVSLNVSNSRITSAGLRHLK-----PLKNLRSLTLESCKVTANDIKRL--QSRDLPNLVSF 403 (406)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~l~l~~~~~~~~~~~~~--~~~~~~~l~~l 403 (406)
+|++|++++|++++.....+. ..++|+.|.+.++.+.....+.+ ....+|+++.+
T Consensus 399 ~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred CccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 999999999999886655442 34579999999988776443322 23477887654
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.5e-37 Score=281.46 Aligned_cols=345 Identities=19% Similarity=0.201 Sum_probs=252.1
Q ss_pred cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCcc--ccc
Q 015457 2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM--KPL 79 (406)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~ 79 (406)
|..+.++++|++|++++|.......+..|.++++|++|++++|......+..+..+++|++|++++|.. +...+ ..+
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~ 125 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL-DGAVLSGNFF 125 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCC-BTHHHHSSTT
T ss_pred hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCC-CccccCcccc
Confidence 667899999999999999754455567799999999999999986655677899999999999999754 33222 337
Q ss_pred cCCCCccEEEeccCccChhHHHh-hhcCCCCCEEEecCCCCChhhHHHHhcC--CCCcEEEcCCccCChhhhhh------
Q 015457 80 SGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEK------ 150 (406)
Q Consensus 80 ~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~------ 150 (406)
..+++|++|++++|.+....+.. +.++++|++|++++|.+....+..+..+ .+|+.++++++.+....+..
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccc
Confidence 88999999999999988765544 7899999999999999888777666655 78999999999877644332
Q ss_pred --ccCCCCccEEEecCCccchhHHhhhcC---CCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhh--
Q 015457 151 --FSKIGSLKVLNLGFNEITDECLVHLKG---LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-- 223 (406)
Q Consensus 151 --~~~l~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l-- 223 (406)
+..+++|+.|++++|.+.+..+..+.. .++|+.++++++........ ...++. .....+
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~-------------~~~~~~~~ 271 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKD-------------PDNFTFKG 271 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCC-------------CCTTTTGG
T ss_pred ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhcc-------------Cccccccc
Confidence 335689999999999998877776643 38899999998854322110 000110 000011
Q ss_pred cCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCE
Q 015457 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303 (406)
Q Consensus 224 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 303 (406)
...++|+.|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++
T Consensus 272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 12356777777777766655666666777777777777777655556666777777777777776665666677777777
Q ss_pred EEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccCh
Q 015457 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362 (406)
Q Consensus 304 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 362 (406)
|++++|.+++..+..+..+++|++|++++| .+....+..+..+++|+.|++++|+++.
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence 777777777766666777777777777777 6666555556677777778877777654
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-38 Score=308.81 Aligned_cols=376 Identities=23% Similarity=0.258 Sum_probs=269.3
Q ss_pred cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCcccc--ccCCCCccEEeecCCCCcCcCccccc
Q 015457 2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPL 79 (406)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~ 79 (406)
|..|.++++|++|++++|. +....+..|.++++|++|++++|......+.. +..+++|++|++++|..........+
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~ 144 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144 (844)
T ss_dssp TTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGG
T ss_pred HHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhH
Confidence 5678999999999999997 56666788999999999999999755434443 88999999999999765443344578
Q ss_pred cCCCCccEEEeccCccChhHHHhhhcC--CC------------------------------CCEEEecCCCCChhhHHHH
Q 015457 80 SGLTNLKSLQISCSKVTDSGIAYLKGL--QK------------------------------LTLLNLEGCPVTAACLDSL 127 (406)
Q Consensus 80 ~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~------------------------------L~~L~l~~~~~~~~~~~~~ 127 (406)
.++++|++|++++|.+....+..+..+ ++ |+.|++++|.+....+..+
T Consensus 145 ~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp GTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred hhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 899999999999988765433333222 22 6677776664433222222
Q ss_pred h------------------------------------c--CCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccch
Q 015457 128 S------------------------------------A--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169 (406)
Q Consensus 128 ~------------------------------------~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 169 (406)
. + .++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC
Confidence 1 1 2578889998888887777788899999999999999987
Q ss_pred hHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhC
Q 015457 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 249 (406)
Q Consensus 170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 249 (406)
..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.++.. ..
T Consensus 305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~ 379 (844)
T 3j0a_A 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HF 379 (844)
T ss_dssp ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SS
T ss_pred CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cC
Confidence 7788899999999999999998877777888999999999999998877777788899999999999987642 12
Q ss_pred CCCCc--------------------EEECCCCCCChHH-HHHHhcCCCCCEEEccCCCCChhHHH-HhhcCCCCCEEEcc
Q 015457 250 LSSLK--------------------SLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGAA-YLRNFKNLRSLEIC 307 (406)
Q Consensus 250 ~~~L~--------------------~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~ 307 (406)
+++|+ .+++++|.+.... ...+..+++|+.|++++|.++..... .+..+++|+.|+++
T Consensus 380 ~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCC
Confidence 34444 4444444444422 23345788888888888887753221 23446777777777
Q ss_pred CCCCChH-----HHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCC
Q 015457 308 GGGLTDA-----GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382 (406)
Q Consensus 308 ~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 382 (406)
+|.+... .+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.++...+..+. ++|+.|++++|
T Consensus 460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp SCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred CCccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence 7776522 1233455667777777776 55555555566667777777777776654443332 55666666666
Q ss_pred CCCh
Q 015457 383 KVTA 386 (406)
Q Consensus 383 ~~~~ 386 (406)
+++.
T Consensus 537 ~l~~ 540 (844)
T 3j0a_A 537 QLLA 540 (844)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6554
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-36 Score=292.14 Aligned_cols=341 Identities=15% Similarity=0.152 Sum_probs=273.6
Q ss_pred ccccccCCCCccEEeecCCCCcCc-----------------Ccccccc--CCCCccEEEeccCccChhHHHhhhcCCCCC
Q 015457 50 GLVNLKGLMKLESLNIKWCNCITD-----------------SDMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110 (406)
Q Consensus 50 ~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 110 (406)
.|..+.++++|++|++++|. ++. ..+..++ .+++|++|++++|.+.+..+..+.++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 45568899999999999976 444 2456666 999999999999988877788899999999
Q ss_pred EEEecCCC-CCh-hhHHHHhcCC-------CCcEEEcCCccCChhhhh--hccCCCCccEEEecCCccchhHHhhhcCCC
Q 015457 111 LLNLEGCP-VTA-ACLDSLSALG-------SLFYLNLNRCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLT 179 (406)
Q Consensus 111 ~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 179 (406)
.|++++|. +.+ ..|..+..++ +|++|++++|.+. ..|. .+..+++|+.|++++|.+. .+| .+..++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 99999998 887 6787776655 9999999999998 5666 8999999999999999998 666 788999
Q ss_pred CCCeEEccCCCCChhhhHhhhCCCC-CCEEEcCCCcCCchhHHhhcCCC--CCcEEeccCCCCChhHHH---Hhh--CCC
Q 015457 180 NLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLT--NLESINLSFTGISDGSLR---KLA--GLS 251 (406)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~---~l~--~~~ 251 (406)
+|+.|++++|.+. ..+..+..+++ |+.|++++|.+... +..+...+ +|+.|++++|.+....+. .+. ..+
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 9999999999987 55556788888 99999999998743 44555443 499999999988764321 112 345
Q ss_pred CCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhc-------CCCCCEEEccCCCCChHHHHhhh--cC
Q 015457 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN-------FKNLRSLEICGGGLTDAGVKHIK--DL 322 (406)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~ 322 (406)
+|+.|++++|.+...+...+..+++|+.|++++|.+.......+.. +++|+.|++++|.++.. +..+. .+
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l 752 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTL 752 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTC
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccC
Confidence 8999999999999877677778999999999999998544333332 23899999999999854 55665 89
Q ss_pred CCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeC------CccChhHHHhcCCCCCccEEEccCCCCChhhHHHHhhcC
Q 015457 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN------SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 396 (406)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~------~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 396 (406)
++|+.|++++| .+.. .+..+..+++|+.|++++ |.+.+..+..+..+++|+.|++++|++.. + ...-
T Consensus 753 ~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~--I---p~~l 825 (876)
T 4ecn_A 753 PYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK--V---DEKL 825 (876)
T ss_dssp TTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB--C---CSCC
T ss_pred CCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc--c---CHhh
Confidence 99999999999 6766 466778999999999977 66777777788899999999999999843 2 1123
Q ss_pred CCCccccC
Q 015457 397 LPNLVSFR 404 (406)
Q Consensus 397 ~~~l~~l~ 404 (406)
+++|+.|.
T Consensus 826 ~~~L~~Ld 833 (876)
T 4ecn_A 826 TPQLYILD 833 (876)
T ss_dssp CSSSCEEE
T ss_pred cCCCCEEE
Confidence 35666554
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-34 Score=264.85 Aligned_cols=345 Identities=29% Similarity=0.356 Sum_probs=279.7
Q ss_pred CCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccE
Q 015457 8 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 87 (406)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 87 (406)
++++++|++.++.. ... +.+..+++|++|++++|... ..+. +..+++|++|++++|.. ..... +..+++|++
T Consensus 45 l~~l~~L~l~~~~i-~~l--~~~~~l~~L~~L~Ls~n~l~-~~~~-~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGI-KSI--DGVEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQI-ADITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCC-CCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCC-CCCGG--GTTCTTCCE
T ss_pred hccccEEecCCCCC-ccC--cchhhhcCCCEEECCCCccC-Cchh-hhccccCCEEECCCCcc-ccChh--hcCCCCCCE
Confidence 57899999998863 332 24788999999999998743 3333 88899999999998654 33332 889999999
Q ss_pred EEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCcc
Q 015457 88 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 167 (406)
Q Consensus 88 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (406)
|++++|.+.+..+ +.++++|++|++++|.+... + .+..+++|+++++.+ .+... ..+..+++|+.|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcC
Confidence 9999998886543 88999999999999987764 2 478899999999964 33332 2378889999999999988
Q ss_pred chhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHh
Q 015457 168 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247 (406)
Q Consensus 168 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 247 (406)
... ..+..+++|++|++++|.+....+ +..+++|+.|+++++.+... ..+..+++|+.|++++|.+....+ +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 753 347788999999999998866544 66789999999999988764 357788999999999998877544 7
Q ss_pred hCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCE
Q 015457 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327 (406)
Q Consensus 248 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 327 (406)
..+++|+.|++++|.+..... +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 789999999999999887543 7788999999999999887544 7789999999999999988654 678999999
Q ss_pred EeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 328 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 386 (406)
|++++| .+... ..+..+++|+.|++++|++++..+ +..+++|+.+++++|++..
T Consensus 336 L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 336 LFFYNN-KVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred eECCCC-ccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 999999 66654 467789999999999999988665 7889999999999998765
No 24
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.1e-34 Score=262.92 Aligned_cols=358 Identities=22% Similarity=0.284 Sum_probs=283.1
Q ss_pred CCCcEeeccCcccccCcccc-ccCCCCccEEeecCCCCcCcC----ccccccCCCCccEEEeccCccChhHHHhh-hcCC
Q 015457 34 INLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDS----DMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQ 107 (406)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~ 107 (406)
++|++|+++++......... +..+++|++|++++|. ++.. ....+..+++|++|+++++.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 57899999988754433333 6789999999999976 3432 23456678999999999999887666544 4455
Q ss_pred ----CCCEEEecCCCCCh----hhHHHHhcCCCCcEEEcCCccCChhhhhhcc-----CCCCccEEEecCCccchh----
Q 015457 108 ----KLTLLNLEGCPVTA----ACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-----KIGSLKVLNLGFNEITDE---- 170 (406)
Q Consensus 108 ----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~---- 170 (406)
+|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 69999999999884 4577788999999999999998765544332 356899999999988763
Q ss_pred HHhhhcCCCCCCeEEccCCCCChhhhHhhh-----CCCCCCEEEcCCCcCCchh----HHhhcCCCCCcEEeccCCCCCh
Q 015457 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLT-----GLCNLKCLELSDTQVGSSG----LRHLSGLTNLESINLSFTGISD 241 (406)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~ 241 (406)
++..+..+++|++|++++|.+.......+. ..++|+.|+++++.+.... ...+..+++|+.|++++|.+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 456667789999999999988765554443 3679999999999987643 4556678999999999998877
Q ss_pred hHHHHh-----hCCCCCcEEECCCCCCChHH----HHHHhcCCCCCEEEccCCCCChhHHHHhhc-----CCCCCEEEcc
Q 015457 242 GSLRKL-----AGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDLFGARITDSGAAYLRN-----FKNLRSLEIC 307 (406)
Q Consensus 242 ~~~~~l-----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~ 307 (406)
.....+ ..+++|++|++++|.++... ...+..+++|++|++++|.+++.....+.. .++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 543332 25899999999999999864 345567899999999999998766555433 3799999999
Q ss_pred CCCCChHH----HHhhhcCCCCCEEeccCCCCCChhHHHHHHc-----CCCccEEEeeCCccCh----hHHHhcCCCCCc
Q 015457 308 GGGLTDAG----VKHIKDLSSLTLLNLSQNCNLTDKTLELISG-----LTGLVSLNVSNSRITS----AGLRHLKPLKNL 374 (406)
Q Consensus 308 ~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~----~~~~~l~~~~~L 374 (406)
+|.+++.. +..+..+++|+.|++++| .+.+..+..+.. .++|+.|++++|.+++ ..+..+..+++|
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 99998764 445667899999999999 788776666553 6799999999999997 556667789999
Q ss_pred cEEEccCCCCChhhHHHHh
Q 015457 375 RSLTLESCKVTANDIKRLQ 393 (406)
Q Consensus 375 ~~l~l~~~~~~~~~~~~~~ 393 (406)
++|++++|+++..++..+.
T Consensus 401 ~~L~l~~N~i~~~~~~~l~ 419 (461)
T 1z7x_W 401 RELDLSNNCLGDAGILQLV 419 (461)
T ss_dssp CEEECCSSSCCHHHHHHHH
T ss_pred cEEECCCCCCCHHHHHHHH
Confidence 9999999999998877765
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.2e-35 Score=275.50 Aligned_cols=363 Identities=18% Similarity=0.169 Sum_probs=258.5
Q ss_pred CCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEE
Q 015457 9 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 88 (406)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 88 (406)
++|++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|++++|. ++..... .+++|++|
T Consensus 52 ~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~---~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC---PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC---CCTTCSEE
T ss_pred CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc---ccccCCEE
Confidence 788888888887 455556678888889999998887555455668888889999988865 3432222 78888889
Q ss_pred EeccCccChhH-HHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCC--cEEEcCCccC--Chhhhhhcc-----------
Q 015457 89 QISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL--FYLNLNRCQL--SDDGCEKFS----------- 152 (406)
Q Consensus 89 ~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~----------- 152 (406)
++++|.+.... +..+.++++|++|+++++.+... .+..+++| +++++++|.+ ....+..+.
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 88888887643 36788888888898888887653 33444555 8888887766 333332222
Q ss_pred ---------------CCCCccEEEecCCc----------------------------cchh----HHhhhcCCCCCCeEE
Q 015457 153 ---------------KIGSLKVLNLGFNE----------------------------ITDE----CLVHLKGLTNLESLN 185 (406)
Q Consensus 153 ---------------~l~~L~~L~l~~~~----------------------------~~~~----~~~~~~~~~~L~~L~ 185 (406)
.+++|+.+++++|. +.+. .+.. ...++|++|+
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~ 282 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLN 282 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEE
Confidence 23345555554442 1110 1111 1123666777
Q ss_pred ccCCCCChhhhHhh-----h--------------------------CCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEec
Q 015457 186 LDSCGIGDEGLVNL-----T--------------------------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234 (406)
Q Consensus 186 l~~~~~~~~~~~~~-----~--------------------------~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 234 (406)
+++|.+....+..+ . ...+|+.++++++.+.... ....+++|+.|++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 76665442222211 1 1245777777776654322 1267899999999
Q ss_pred cCCCCChhHHHHhhCCCCCcEEECCCCCCChHH--HHHHhcCCCCCEEEccCCCCCh-hHHHHhhcCCCCCEEEccCCCC
Q 015457 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--LAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGL 311 (406)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 311 (406)
++|.+++..+..+..+++|+.|++++|.++..+ +..+..+++|+.|++++|.++. .....+..+++|++|++++|.+
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 999998877777888999999999999998743 3557889999999999999987 4444577889999999999999
Q ss_pred ChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 386 (406)
++..+..++ ++|+.|++++| .+... +..+..+++|+.|++++|.++......+..+++|+.+++++|++..
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N-~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNN-RIMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSS-CCCCC-CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred Ccchhhhhc--CcCCEEECCCC-cCccc-ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 876554433 79999999999 67743 4444589999999999999997555557889999999999999876
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.4e-33 Score=254.52 Aligned_cols=328 Identities=30% Similarity=0.416 Sum_probs=274.3
Q ss_pred cccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCC
Q 015457 4 NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 83 (406)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 83 (406)
.+..+++|++|++++|. +....+ +.++++|++|++++|.... .+. +..+++|++|++++|. +.... .+..++
T Consensus 63 ~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~-l~~~~--~~~~l~ 134 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQIAD-ITP-LANLTNLTGLTLFNNQ-ITDID--PLKNLT 134 (466)
T ss_dssp TGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC-CCCCG--GGTTCT
T ss_pred chhhhcCCCEEECCCCc-cCCchh--hhccccCCEEECCCCcccc-Chh-hcCCCCCCEEECCCCC-CCCCh--HHcCCC
Confidence 47789999999999997 444433 8999999999999987443 333 8899999999999875 44332 388999
Q ss_pred CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457 84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163 (406)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (406)
+|++|++++|.+.+.. .+..+++|+.|++++ .+.... .+..+++|++|++++|.+... ..+..+++|+.|+++
T Consensus 135 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~-~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 135 NLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 207 (466)
T ss_dssp TCSEEEEEEEEECCCG--GGTTCTTCSEEEEEE-SCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCEEECCCCccCCCh--hhccCCcccEeecCC-cccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEec
Confidence 9999999999887643 588999999999974 444432 388999999999999998754 347889999999999
Q ss_pred CCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhH
Q 015457 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243 (406)
Q Consensus 164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 243 (406)
+|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+.|+++++.+..... +..+++|+.|++++|.++...
T Consensus 208 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 208 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG
T ss_pred CCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc
Confidence 999886544 67789999999999988654 357789999999999999876644 788999999999999988754
Q ss_pred HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCC
Q 015457 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323 (406)
Q Consensus 244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 323 (406)
+ +..+++|+.|++++|.+.+... +..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+. ..+..++
T Consensus 282 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~ 353 (466)
T 1o6v_A 282 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT 353 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred c--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCC
Confidence 4 7889999999999999988543 7889999999999999987654 77899999999999999886 4678899
Q ss_pred CCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChh
Q 015457 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363 (406)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 363 (406)
+|+.|++++| .+....+ +..+++|+.|++++|++++.
T Consensus 354 ~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 354 NINWLSAGHN-QISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp TCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCEEeCCCC-ccCccch--hhcCCCCCEEeccCCcccCC
Confidence 9999999999 6766655 78999999999999998763
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.9e-33 Score=245.39 Aligned_cols=307 Identities=27% Similarity=0.353 Sum_probs=216.7
Q ss_pred ccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCC
Q 015457 54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133 (406)
Q Consensus 54 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 133 (406)
+..+++|++|+++++.. .. ...+..+++|++|+++++.+.+... +.++++|++|++++|.+... ..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i-~~--~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKV-AS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCC-CC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred chhcccccEEEEeCCcc-cc--chhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 34456666666666432 21 1235566677777777666665433 66667777777777766553 246667777
Q ss_pred cEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCC
Q 015457 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213 (406)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 213 (406)
++|++++|.+....+ +..+++|+.|++++|......+ .+..+++|++|+++++.+..... +..+++|+.++++++
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 777777776654332 6666777777777764432222 36677777777777776654433 567777888888877
Q ss_pred cCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHH
Q 015457 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293 (406)
Q Consensus 214 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 293 (406)
.+..... +..+++|+.++++++.++.... +..+++|++|++++|.++.... +..+++|++|++++|.++.. .
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~ 259 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N 259 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--h
Confidence 7665433 6677888888888887766443 6677888888888888877543 67788888888888888764 3
Q ss_pred HhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCC
Q 015457 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 373 (406)
Q Consensus 294 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 373 (406)
.+..+++|++|++++|.+.+. ..+..+++|+.|++++| .+....+..+..+++|+.|++++|++++..+ +..+++
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 334 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTT
T ss_pred hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhc
Confidence 567788999999999888775 35778899999999999 7888888888899999999999999887655 678899
Q ss_pred ccEEEccCCCCC
Q 015457 374 LRSLTLESCKVT 385 (406)
Q Consensus 374 L~~l~l~~~~~~ 385 (406)
|+.+++++|+++
T Consensus 335 L~~L~l~~N~i~ 346 (347)
T 4fmz_A 335 MDSADFANQVIK 346 (347)
T ss_dssp CSEESSSCC---
T ss_pred cceeehhhhccc
Confidence 999999999875
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=266.77 Aligned_cols=302 Identities=20% Similarity=0.226 Sum_probs=225.8
Q ss_pred CCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEE
Q 015457 58 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137 (406)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 137 (406)
+++++|+++++ .++......+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|+
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 57888888874 35555566777888888888888888776677788888888888888887776555677788888888
Q ss_pred cCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCc
Q 015457 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217 (406)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 217 (406)
+++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++.++.+..
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 88888777667777788888888888887776666677778888888888887776666677778888888888887776
Q ss_pred hhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhc
Q 015457 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297 (406)
Q Consensus 218 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 297 (406)
.....+..+++|+.|+++++......+.......+|++|++++|.++..+...+..+++|+.|++++|.++...+..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 66666777788888888777554444333444457788888877777766666777777888888877777666666677
Q ss_pred CCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361 (406)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 361 (406)
+++|++|++++|.+.+..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|++.
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCcc
Confidence 777788888777777766666777777777777777 666655556667777777777777764
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.5e-32 Score=240.41 Aligned_cols=306 Identities=29% Similarity=0.346 Sum_probs=229.8
Q ss_pred hcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCC
Q 015457 31 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110 (406)
Q Consensus 31 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 110 (406)
..+++|++|+++++.... .+.+..+++|++|++++|. ++.... +..+++|++|++++|.+... ..+.++++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~--~~~~~~~~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHTTCSEEECCSSCCCC--CTTGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred hhcccccEEEEeCCcccc--chhhhhcCCccEEEccCCc-cccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 456778888888766332 2346778888888888764 333322 77788888888888877653 3577888888
Q ss_pred EEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCC
Q 015457 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 190 (406)
Q Consensus 111 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 190 (406)
+|++++|.+....+ +..+++|+++++++|..... ...+..+++|+.|+++++.+....+ +..+++|+.|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 88888887776533 77788888888888754432 2337778888888888887764333 6778888888888887
Q ss_pred CChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHH
Q 015457 191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 270 (406)
Q Consensus 191 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 270 (406)
+..... +..+++|+.++++++.+..... +..+++|+.|++++|.++...+ +..+++|++|++++|.++.. ..
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 765433 6678888888888888766543 6778888888888888876544 77888899999988888774 45
Q ss_pred HhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCc
Q 015457 271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350 (406)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 350 (406)
+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|+.|++++| .+....+ +..+++|
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP--LASLSKM 335 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCGG--GGGCTTC
T ss_pred HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC-ccccccC--hhhhhcc
Confidence 67888899999999888765 34778899999999999988888888888999999999998 5666554 7788999
Q ss_pred cEEEeeCCccC
Q 015457 351 VSLNVSNSRIT 361 (406)
Q Consensus 351 ~~L~l~~~~~~ 361 (406)
+.|++++|+++
T Consensus 336 ~~L~l~~N~i~ 346 (347)
T 4fmz_A 336 DSADFANQVIK 346 (347)
T ss_dssp SEESSSCC---
T ss_pred ceeehhhhccc
Confidence 99999999865
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-34 Score=265.00 Aligned_cols=348 Identities=16% Similarity=0.170 Sum_probs=253.8
Q ss_pred cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC
Q 015457 2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81 (406)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 81 (406)
|..|.++++|++|++++|. +....+..|.++++|++|++++|... ..+.. .+++|++|++++|.......+..++.
T Consensus 38 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~ 113 (520)
T 2z7x_B 38 TSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGN 113 (520)
T ss_dssp HHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGG
T ss_pred hhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhcc
Confidence 4568999999999999997 56666788999999999999998744 33333 79999999999976433345578889
Q ss_pred CCCccEEEeccCccChhHHHhhhcCCCC--CEEEecCCCC--ChhhHHHH------------------------------
Q 015457 82 LTNLKSLQISCSKVTDSGIAYLKGLQKL--TLLNLEGCPV--TAACLDSL------------------------------ 127 (406)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~------------------------------ 127 (406)
+++|++|++++|.+... .+..+++| +.|++++|.+ ....|..+
T Consensus 114 l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~ 190 (520)
T 2z7x_B 114 MSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190 (520)
T ss_dssp CTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCS
T ss_pred CCcceEEEecCcccchh---hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccc
Confidence 99999999999988763 45666777 8888888766 33222222
Q ss_pred --------------------------hcCCCCcEEEcCCccCChhhhhhc---cCCCCccEEEecCCccchhHHhhh---
Q 015457 128 --------------------------SALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVLNLGFNEITDECLVHL--- 175 (406)
Q Consensus 128 --------------------------~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~--- 175 (406)
..+++|+.+++.++.+.+.....+ ...++|+.|++++|.+.+..|..+
T Consensus 191 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 270 (520)
T 2z7x_B 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270 (520)
T ss_dssp EEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC
T ss_pred ceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc
Confidence 233344444443333322111110 012355666665555543334333
Q ss_pred --cCCC--------------------------CCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCC
Q 015457 176 --KGLT--------------------------NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 227 (406)
Q Consensus 176 --~~~~--------------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~ 227 (406)
..++ +|+.|+++++.+.... ....+++|+.|+++++.+....+..++.++
T Consensus 271 ~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 348 (520)
T 2z7x_B 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLT 348 (520)
T ss_dssp CSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCS
T ss_pred ccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCC
Confidence 3333 4555666555543221 125789999999999999887777889999
Q ss_pred CCcEEeccCCCCCh--hHHHHhhCCCCCcEEECCCCCCCh-HHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEE
Q 015457 228 NLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304 (406)
Q Consensus 228 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 304 (406)
+|+.|++++|.++. ..+..+..+++|++|++++|.+.. .+...+..+++|+.|++++|.+++..+..+. ++|+.|
T Consensus 349 ~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L 426 (520)
T 2z7x_B 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVL 426 (520)
T ss_dssp SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEE
T ss_pred CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEE
Confidence 99999999999987 345678899999999999999987 5444567889999999999999875544332 799999
Q ss_pred EccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccCh
Q 015457 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362 (406)
Q Consensus 305 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 362 (406)
++++|.++.. +..+..+++|+.|++++| .+.......+..+++|+.|++++|++..
T Consensus 427 ~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 427 DLHSNKIKSI-PKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp ECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCccccc-chhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCcc
Confidence 9999999855 555668999999999999 7776554558889999999999999864
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.9e-34 Score=261.82 Aligned_cols=301 Identities=21% Similarity=0.193 Sum_probs=248.0
Q ss_pred CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEE
Q 015457 34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113 (406)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 113 (406)
+++++|++++|......+..+..+++|++|++++| .+....+..+..+++|++|++++|.+...+...+.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 58899999988755555567888999999999885 45556667788899999999998888876666778889999999
Q ss_pred ecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCCh
Q 015457 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193 (406)
Q Consensus 114 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 193 (406)
+++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++.+|.+..
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 99998888777778888999999999988887777788888999999999988887666778888999999999988877
Q ss_pred hhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhc
Q 015457 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273 (406)
Q Consensus 194 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 273 (406)
..+..+..+++|+.|+++++......+.......+|+.|++++|.++......+..+++|+.|++++|.++......+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 76677788889999999887655444444444568999999999888777677888899999999999888776667778
Q ss_pred CCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCC
Q 015457 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335 (406)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (406)
+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|+.
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 88999999999998887777788889999999999988887676777888999999998843
No 32
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=7e-32 Score=255.88 Aligned_cols=388 Identities=18% Similarity=0.213 Sum_probs=247.3
Q ss_pred CCCCCceeeccCCccCCHHHHHHHhc-CCC-CcEeeccCcccccC-ccc-cccCCCCccEEeecCCCCcCcCc----ccc
Q 015457 7 GLSNLTSLSFRRNNAITAQGMKAFAG-LIN-LVKLDLERCTRIHG-GLV-NLKGLMKLESLNIKWCNCITDSD----MKP 78 (406)
Q Consensus 7 ~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~----~~~ 78 (406)
++++|++|++++|. ++...+..+.. +++ |++|++++|..... ... ....+++|++|++++|.. .+.. ...
T Consensus 110 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~ 187 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF-SEKDGKWLHEL 187 (592)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEE-ECCCSHHHHHH
T ss_pred hCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccc-cCcchhHHHHH
Confidence 45555555555553 33333343433 333 55555555542111 111 122455666666655432 2111 112
Q ss_pred ccCCCCccEEEeccCccC----hhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCC---hhhhhhc
Q 015457 79 LSGLTNLKSLQISCSKVT----DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS---DDGCEKF 151 (406)
Q Consensus 79 ~~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~ 151 (406)
...+++|++|+++++.+. ......+.++++|+.|+++++.+.+ .+..+..+++|+++++...... ......+
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 234556666666555544 1222334455666666666655544 2445555666666666532211 1112334
Q ss_pred cCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhh-HhhhCCCCCCEEEcCCCcCCchh-HHhhcCCCCC
Q 015457 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSG-LRHLSGLTNL 229 (406)
Q Consensus 152 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~~~~L 229 (406)
..+++|+.+.+.+... ...+..+..+++|++|++++|.+..... ..+..+++|+.|++. +.+.... ......+++|
T Consensus 267 ~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred hccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 4556677777766433 2556667788899999999998765544 346789999999998 3333333 3334678999
Q ss_pred cEEeccC-----------CCCChhHHHH-hhCCCCCcEEECCCCCCChHHHHHHhc-CCCCCEEEcc----CCCCCh---
Q 015457 230 ESINLSF-----------TGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLF----GARITD--- 289 (406)
Q Consensus 230 ~~L~l~~-----------~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~--- 289 (406)
+.|++++ +.+++..... ...+++|++|.+..+.+++.....+.. +++|++|+++ .+.+++
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 9999983 5676654444 346899999999888898877777665 8999999996 455664
Q ss_pred --hHHHHhhcCCCCCEEEccCCC--CChHHHHhhhc-CCCCCEEeccCCCCCChhH-HHHHHcCCCccEEEeeCCccChh
Q 015457 290 --SGAAYLRNFKNLRSLEICGGG--LTDAGVKHIKD-LSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSA 363 (406)
Q Consensus 290 --~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~ 363 (406)
.....+..+++|++|+++.|. +++.....+.. +++|+.|++++| .+.+.. +..+..+++|++|++++|++++.
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 244456779999999998654 77777666654 899999999999 677654 44456899999999999998876
Q ss_pred HHHhc-CCCCCccEEEccCCCCChhhHHHHhhcCCCCcc
Q 015457 364 GLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 401 (406)
Q Consensus 364 ~~~~l-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~ 401 (406)
....+ ..+++|+.|++++|+++..+++.+. ..+|.+.
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~-~~~p~l~ 541 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ-MARPYWN 541 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCBCCTTCTTGGG-GCCTTEE
T ss_pred HHHHHHHhcCccCeeECcCCcCCHHHHHHHH-HhCCCcE
Confidence 55544 5789999999999999988877775 3666654
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.2e-33 Score=248.25 Aligned_cols=317 Identities=18% Similarity=0.152 Sum_probs=242.9
Q ss_pred CCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcE
Q 015457 56 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135 (406)
Q Consensus 56 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 135 (406)
.++++++++++++ .++......+..+++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3577888888774 355555555677888888888888877766667788888888888888887776777788888888
Q ss_pred EEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcC
Q 015457 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215 (406)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 215 (406)
|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+... .+..+++|+.++++++.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 88888887765555667788888888888888766666777888888888888877654 245678888888888876
Q ss_pred CchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHh
Q 015457 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295 (406)
Q Consensus 216 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 295 (406)
... ...++|+.|+++++.+..... ...++|+.|++++|.+++. ..+..+++|++|++++|.++...+..+
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 542 445688888888888776421 2357889999998888874 467788899999999998887777778
Q ss_pred hcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCcc
Q 015457 296 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 375 (406)
Q Consensus 296 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 375 (406)
..+++|++|++++|.+++. +..+..+++|+.|++++| .+... +..+..+++|+.|++++|+++... +..+++|+
T Consensus 269 ~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~ 342 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLK 342 (390)
T ss_dssp TTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSS-CCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCS
T ss_pred cccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCC-cceec-CccccccCcCCEEECCCCccceeC---chhhccCC
Confidence 8889999999999988775 334466889999999998 56543 334567889999999999987653 56788899
Q ss_pred EEEccCCCCChhhHHHH
Q 015457 376 SLTLESCKVTANDIKRL 392 (406)
Q Consensus 376 ~l~l~~~~~~~~~~~~~ 392 (406)
.|++++|++.......+
T Consensus 343 ~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 343 NLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp EEECCSSCEEHHHHHHH
T ss_pred EEEcCCCCccchhHHHH
Confidence 99999999888766655
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-33 Score=264.03 Aligned_cols=382 Identities=18% Similarity=0.153 Sum_probs=267.7
Q ss_pred CCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCcc
Q 015457 7 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86 (406)
Q Consensus 7 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 86 (406)
.|...++++++++. ++.++ ..+ .++|++|++++|......+..+..+++|++|++++| .++...+..+..+++|+
T Consensus 29 ~~~~~~~l~ls~~~-L~~ip-~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 29 SNELESMVDYSNRN-LTHVP-KDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp ----CCEEECTTSC-CCSCC-TTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCC
T ss_pred ccCCCcEEEcCCCC-CccCC-CCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCC
Confidence 34556899999887 44433 222 389999999999866555568899999999999986 45666677788999999
Q ss_pred EEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhh-HHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCC
Q 015457 87 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165 (406)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (406)
+|++++|.+...+.. .+++|++|++++|.+.... |..++.+++|++|++++|.+.......+..+ +|+.|++++|
T Consensus 104 ~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n 179 (562)
T 3a79_B 104 YLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLV 179 (562)
T ss_dssp EEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEES
T ss_pred EEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecc
Confidence 999999998854332 7899999999999988743 5788999999999999998876433333333 4499999988
Q ss_pred cc--chhHHhhhc--------------------------CCCCCCeEEccCCC---------------------------
Q 015457 166 EI--TDECLVHLK--------------------------GLTNLESLNLDSCG--------------------------- 190 (406)
Q Consensus 166 ~~--~~~~~~~~~--------------------------~~~~L~~L~l~~~~--------------------------- 190 (406)
.+ ....+..+. .+++|+.+++++|.
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 77 433333332 23455555555542
Q ss_pred -CChhhhH---hhhCCCCCCEEEcCCCcCCchhHHhh-----cCC--------------------------CCCcEEecc
Q 015457 191 -IGDEGLV---NLTGLCNLKCLELSDTQVGSSGLRHL-----SGL--------------------------TNLESINLS 235 (406)
Q Consensus 191 -~~~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~l-----~~~--------------------------~~L~~L~l~ 235 (406)
+...... .....++|++|+++++.+....+..+ ..+ .+++.|+++
T Consensus 260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 1111100 01123478888888777653222222 222 345566666
Q ss_pred CCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCCh--hHHHHhhcCCCCCEEEccCCCCCh
Q 015457 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD--SGAAYLRNFKNLRSLEICGGGLTD 313 (406)
Q Consensus 236 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~ 313 (406)
++.+..... ...+++|++|++++|.+++..+..+..+++|+.|++++|.++. ..+..+..+++|++|++++|.+.+
T Consensus 340 ~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 340 DTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred CCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 555543210 1568899999999999998666777889999999999999987 345668899999999999999887
Q ss_pred -HHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCChhhHHHH
Q 015457 314 -AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392 (406)
Q Consensus 314 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~ 392 (406)
.....+..+++|+.|++++| .+....+..+. ++|+.|++++|.++..... +..+++|++|++++|+++.-...
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~-- 491 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDG-- 491 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSSCCCCCCTT-TTSSCCCSEEECCSSCCCCCCTT--
T ss_pred ccChhhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCCcCcccChh-hcCCCCCCEEECCCCCCCCCCHH--
Confidence 43345677899999999999 67654433322 6999999999999864443 44899999999999998853222
Q ss_pred hhcCCCCccccCC
Q 015457 393 QSRDLPNLVSFRP 405 (406)
Q Consensus 393 ~~~~~~~l~~l~~ 405 (406)
....+++|+.+..
T Consensus 492 ~~~~l~~L~~L~l 504 (562)
T 3a79_B 492 VFDRLTSLQYIWL 504 (562)
T ss_dssp STTTCTTCCCEEC
T ss_pred HHhcCCCCCEEEe
Confidence 2346777777653
No 35
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.4e-31 Score=253.81 Aligned_cols=396 Identities=18% Similarity=0.172 Sum_probs=291.4
Q ss_pred ccCCCCCceeeccCCccCC-------------HH-HHHHHhcCCCCcEeeccCcccccCccccccC-CCC-ccEEeecCC
Q 015457 5 LSGLSNLTSLSFRRNNAIT-------------AQ-GMKAFAGLINLVKLDLERCTRIHGGLVNLKG-LMK-LESLNIKWC 68 (406)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~-------------~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~ 68 (406)
+.++++|++|++++|..+. .. .......+++|++|++++|......+..+.. +++ |++|++++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 4678899999997764321 11 2233448999999999998644333444444 455 999999988
Q ss_pred CCcCcCccccc-cCCCCccEEEeccCccChh----HHHhhhcCCCCCEEEecCCCCC----hhhHHHHhcCCCCcEEEcC
Q 015457 69 NCITDSDMKPL-SGLTNLKSLQISCSKVTDS----GIAYLKGLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLN 139 (406)
Q Consensus 69 ~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~ 139 (406)
..+.......+ ..+++|++|+++++.+.+. .......+++|++|+++++.+. ...+..+..+++|++|++.
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence 64443333222 3789999999998876544 3345578899999999998876 3445556788999999999
Q ss_pred CccCChhhhhhccCCCCccEEEecCCccc---hhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCC
Q 015457 140 RCQLSDDGCEKFSKIGSLKVLNLGFNEIT---DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216 (406)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 216 (406)
+|.+.. .+..+..+++|+.|+++..... ...+..+..+++|+.+.+.+... ...+..+..+++|++|+++++.+.
T Consensus 229 ~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 229 DFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp SCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCC
T ss_pred CccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCC
Confidence 988765 4567788899999999854322 12234456778999999987533 334555667899999999999876
Q ss_pred chhH-HhhcCCCCCcEEeccCCCCChhHHHH-hhCCCCCcEEECC-----------CCCCChHHHHH-HhcCCCCCEEEc
Q 015457 217 SSGL-RHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLD-----------ARQITDTGLAA-LTSLTGLTHLDL 282 (406)
Q Consensus 217 ~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~-----------~~~~~~~~~~~-~~~~~~L~~L~l 282 (406)
.... ..+..+++|+.|++. +.+.+..... ...+++|++|+++ .+.++...... ...+++|++|++
T Consensus 307 ~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 307 TEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp HHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred HHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence 5544 446889999999998 4444443333 4568999999999 35677654444 456899999999
Q ss_pred cCCCCChhHHHHhhc-CCCCCEEEcc----CCCCChH-----HHHhhhcCCCCCEEeccCCC-CCChhHHHHHH-cCCCc
Q 015457 283 FGARITDSGAAYLRN-FKNLRSLEIC----GGGLTDA-----GVKHIKDLSSLTLLNLSQNC-NLTDKTLELIS-GLTGL 350 (406)
Q Consensus 283 ~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~-~~~~L 350 (406)
+.+.+++.....+.. +++|++|+++ .+.+++. ....+..+++|+.|+++.|. .+.......+. .+++|
T Consensus 386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L 465 (592)
T 3ogk_B 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465 (592)
T ss_dssp EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence 989999877777765 9999999996 5567652 34446779999999998763 26776666665 48999
Q ss_pred cEEEeeCCccChhHHHh-cCCCCCccEEEccCCCCChhhHHHHhhcCCCCccccC
Q 015457 351 VSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404 (406)
Q Consensus 351 ~~L~l~~~~~~~~~~~~-l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~ 404 (406)
+.|++++|++++..... +..+++|++|++++|+++...+..+. ..+++|+.|.
T Consensus 466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~ 519 (592)
T 3ogk_B 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV-TKLPSLRYLW 519 (592)
T ss_dssp CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH-HHCSSCCEEE
T ss_pred eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH-HhcCccCeeE
Confidence 99999999998866554 47899999999999999877777664 3688888765
No 36
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=5.8e-31 Score=249.71 Aligned_cols=389 Identities=23% Similarity=0.260 Sum_probs=260.3
Q ss_pred cCCCCCceeeccCCccCCHHHHHHHh-cCCCCcEeeccCcccccC-cccc-ccCCCCccEEeecCCCCcCcCccccc---
Q 015457 6 SGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVN-LKGLMKLESLNIKWCNCITDSDMKPL--- 79 (406)
Q Consensus 6 ~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~--- 79 (406)
.++++|++|++++|. ++...+..+. .+++|++|++++|..... .... ...+++|++|++++|. +++.....+
T Consensus 102 ~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~ 179 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHF 179 (594)
T ss_dssp HHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGS
T ss_pred HhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHH
Confidence 356677777777775 4555555554 577777777777643322 1222 3357777777777764 333222222
Q ss_pred -cCCCCccEEEeccCc--cChhHHHh-hhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccC--C----hhhhh
Q 015457 80 -SGLTNLKSLQISCSK--VTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL--S----DDGCE 149 (406)
Q Consensus 80 -~~~~~L~~L~l~~~~--~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--~----~~~~~ 149 (406)
..+++|++|+++++. +....... +.++++|++|++++|......+..+..+++|+++++..+.. . ...+.
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 256677777777664 43333322 35567777777777633333455666777777777654421 1 01223
Q ss_pred hccCCCCccEEE-ecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhH-hhhCCCCCCEEEcCCCcCCchhHHhh-cCC
Q 015457 150 KFSKIGSLKVLN-LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELSDTQVGSSGLRHL-SGL 226 (406)
Q Consensus 150 ~~~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~l-~~~ 226 (406)
.+..+++|+.+. +..... ..++..+..+++|++|++++|.+...... .+..+++|+.|++.++ +.......+ ..+
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC 337 (594)
T ss_dssp HHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred HHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence 456677777773 332221 23444445678999999999987655443 3567899999999987 333333333 358
Q ss_pred CCCcEEecc---------CCCCChhHHHHhh-CCCCCcEEECCCCCCChHHHHHHh-cCCCCCEEEcc--C----CCCC-
Q 015457 227 TNLESINLS---------FTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLF--G----ARIT- 288 (406)
Q Consensus 227 ~~L~~L~l~---------~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~- 288 (406)
++|+.|++. .+.+++.....+. .+++|+.|.+..+.++......+. .+++|+.|+++ + +.++
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 999999883 3466666555555 489999998888888887666665 58999999998 3 4555
Q ss_pred ---h-hHHHHhhcCCCCCEEEccCCCCChHHHHhhhc-CCCCCEEeccCCCCCChhHHHHH-HcCCCccEEEeeCCccCh
Q 015457 289 ---D-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSRITS 362 (406)
Q Consensus 289 ---~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~ 362 (406)
+ .....+..+++|++|++++ .+++.....+.. +++|+.|++++| .+++.....+ ..+++|+.|++++|++++
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 2 2233467789999999987 788877777765 899999999999 6777666665 679999999999999987
Q ss_pred hHHHhc-CCCCCccEEEccCCCCChhhHHHHhhcCCCCcc
Q 015457 363 AGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 401 (406)
Q Consensus 363 ~~~~~l-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~ 401 (406)
.....+ ..+++|+.|++++|+++..+++.+. ..+|+++
T Consensus 496 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~lp~l~ 534 (594)
T 2p1m_B 496 KALLANASKLETMRSLWMSSCSVSFGACKLLG-QKMPKLN 534 (594)
T ss_dssp HHHHHTGGGGGGSSEEEEESSCCBHHHHHHHH-HHCTTEE
T ss_pred HHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH-HhCCCCE
Confidence 776544 5589999999999999888787774 3567663
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=9e-33 Score=264.37 Aligned_cols=374 Identities=20% Similarity=0.220 Sum_probs=250.4
Q ss_pred CCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEE
Q 015457 10 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 89 (406)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 89 (406)
++++|+|++|. ++.+.+..|.++++|++|++++|......+.+|..+++|++|++++|. ++......+..+++|++|+
T Consensus 53 ~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEE
Confidence 67888888876 566666678888888888888876544444567778888888888753 5555556677888888888
Q ss_pred eccCccChhHHHhhhcCCCCCEEEecCCCCChh-hHHHHhcCCCCcEEEcCCccCChhhhhhccCCC-------------
Q 015457 90 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG------------- 155 (406)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~------------- 155 (406)
+++|.+.......+.++++|++|++++|.+... .|..+..+++|++|++++|.+....+..+..+.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 888887766656677888888888888877553 355667788888888888776554333222110
Q ss_pred --------------CccEEEecCCccch-hHHh-----------------------------------------------
Q 015457 156 --------------SLKVLNLGFNEITD-ECLV----------------------------------------------- 173 (406)
Q Consensus 156 --------------~L~~L~l~~~~~~~-~~~~----------------------------------------------- 173 (406)
.++.+++.++.... ..+.
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 11222222221110 0000
Q ss_pred --------------------------------hhcCCCCCCeEEccCCCCChhh-------------------hHhhhCC
Q 015457 174 --------------------------------HLKGLTNLESLNLDSCGIGDEG-------------------LVNLTGL 202 (406)
Q Consensus 174 --------------------------------~~~~~~~L~~L~l~~~~~~~~~-------------------~~~~~~~ 202 (406)
.+.....++.+++.++.+.... ......+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 0111223444444433221110 0011235
Q ss_pred CCCCEEEcCCCcCCchh--HHhh-----------------------cCCCCCcEEeccCCCCChh-HHHHhhCCCCCcEE
Q 015457 203 CNLKCLELSDTQVGSSG--LRHL-----------------------SGLTNLESINLSFTGISDG-SLRKLAGLSSLKSL 256 (406)
Q Consensus 203 ~~L~~l~l~~~~~~~~~--~~~l-----------------------~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L 256 (406)
++|+.++++.+.+.... .... ..+++|+.+++..+..... ....+..+++++.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 66777777766543211 1222 2334455555544422221 12234567788888
Q ss_pred ECCCCCCChHHHHHHhcCCCCCEEEccCCCCCh-hHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCC
Q 015457 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335 (406)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (406)
+++.|.+.......+..++.++.|++++|.... ..+..+..+++|++|++++|.+++..+..|..+++|++|++++| .
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~ 529 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-N 529 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-C
T ss_pred cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-c
Confidence 888888777656667788899999999987543 34556788999999999999999988888999999999999999 7
Q ss_pred CChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCC-CCccEEEccCCCCCh
Q 015457 336 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL-KNLRSLTLESCKVTA 386 (406)
Q Consensus 336 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~l~l~~~~~~~ 386 (406)
+....+..+..+++|+.|++++|+++...+..+..+ ++|++|++++|++.+
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 888777788899999999999999999888888877 689999999999876
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=4.5e-32 Score=256.16 Aligned_cols=316 Identities=19% Similarity=0.160 Sum_probs=238.9
Q ss_pred CCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEE
Q 015457 57 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 136 (406)
Q Consensus 57 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 136 (406)
+.+++.++++++ .+...+...+..+++|++|+++++.+.+..+..+..+++|++|++++|.+....+..++.+++|++|
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 567788888774 3454555556778888888888888877666677888888888888888877767777788888888
Q ss_pred EcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCC
Q 015457 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216 (406)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 216 (406)
++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+.... +..+++|+.++++++.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 88888877666666778888888888888887666777778888888888888776542 445778888888887765
Q ss_pred chhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhh
Q 015457 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296 (406)
Q Consensus 217 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 296 (406)
. +...++|+.|++++|.++.... ...++|+.|++++|.+++. ..+..+++|+.|++++|.+....+..+.
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 4 2455678888888887765422 1246788888888888873 5667788888888888888877777788
Q ss_pred cCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccE
Q 015457 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376 (406)
Q Consensus 297 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 376 (406)
.+++|+.|++++|.+.+. +..+..+|+|+.|++++| .+.. .+..+..+++|+.|++++|.++... +..+++|+.
T Consensus 276 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N-~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 276 KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN 349 (597)
T ss_dssp TCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSS-CCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred CccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCC-CCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence 888888888888888775 444556788889999888 5553 3444567888889999988887643 567788889
Q ss_pred EEccCCCCChhhHHHH
Q 015457 377 LTLESCKVTANDIKRL 392 (406)
Q Consensus 377 l~l~~~~~~~~~~~~~ 392 (406)
|++++|++.......+
T Consensus 350 L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 350 LTLSHNDWDCNSLRAL 365 (597)
T ss_dssp EECCSSCEEHHHHHHH
T ss_pred EEeeCCCCCChhHHHH
Confidence 9999998887665554
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-31 Score=239.96 Aligned_cols=316 Identities=17% Similarity=0.168 Sum_probs=200.7
Q ss_pred CCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEE
Q 015457 33 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 112 (406)
Q Consensus 33 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (406)
+++++.++++++.........+..+++|++|+++++. +.......+..+++|++|+++++.+....+..+.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4556666665554222222224555666666665532 333344455566666666666666655555555666666666
Q ss_pred EecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCC
Q 015457 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 192 (406)
Q Consensus 113 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 192 (406)
++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+... .+..+++|+.+++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 6666666554333345666666666666666655555566666666666666665532 2345566677777666554
Q ss_pred hhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHh
Q 015457 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 272 (406)
Q Consensus 193 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 272 (406)
.. ...+.|+.++++++.+..... ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+.
T Consensus 200 ~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 TL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp EE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 22 233467777777776654422 2346777777777777654 3566778888888888877776566677
Q ss_pred cCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccE
Q 015457 273 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352 (406)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 352 (406)
.+++|++|++++|.++.. +..+..+++|++|++++|.+... +..+..+++|+.|++++| .+.... +..+++|+.
T Consensus 270 ~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N-~i~~~~---~~~~~~L~~ 343 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKN 343 (390)
T ss_dssp TCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSE
T ss_pred ccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCC-ccceeC---chhhccCCE
Confidence 788888888888877763 22335678888888888888765 445677888899999888 555442 567788999
Q ss_pred EEeeCCccChhHHHhc
Q 015457 353 LNVSNSRITSAGLRHL 368 (406)
Q Consensus 353 L~l~~~~~~~~~~~~l 368 (406)
|++++|++.......+
T Consensus 344 L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 344 LTLSHNDWDCNSLRAL 359 (390)
T ss_dssp EECCSSCEEHHHHHHH
T ss_pred EEcCCCCccchhHHHH
Confidence 9999999877655544
No 40
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=2e-30 Score=245.98 Aligned_cols=394 Identities=21% Similarity=0.234 Sum_probs=276.5
Q ss_pred ccCCCCCceeeccCCccCCHH--------------HHHHHhcCCCCcEeeccCcccccCcccccc-CCCCccEEeecCCC
Q 015457 5 LSGLSNLTSLSFRRNNAITAQ--------------GMKAFAGLINLVKLDLERCTRIHGGLVNLK-GLMKLESLNIKWCN 69 (406)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 69 (406)
+.++++|++|+++++..+... .......+++|++|++++|......+..+. .+++|++|++++|.
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 456788888888887533211 123345788899999888764433344444 58889999998876
Q ss_pred CcCcCccccc-cCCCCccEEEeccCccChhHHHhh----hcCCCCCEEEecCCC--CChhh-HHHHhcCCCCcEEEcCCc
Q 015457 70 CITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYL----KGLQKLTLLNLEGCP--VTAAC-LDSLSALGSLFYLNLNRC 141 (406)
Q Consensus 70 ~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~--~~~~~-~~~~~~l~~L~~L~l~~~ 141 (406)
.++......+ ..+++|++|++++|.+.+.....+ ..+++|+.|+++++. +.... ...+..+++|++|++.+|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 5554333333 378889999988887655443333 356788889888875 33222 222345788999998887
Q ss_pred cCChhhhhhccCCCCccEEEecCCc-------cchhHHhhhcCCCCCCeE-EccCCCCChhhhHhhhCCCCCCEEEcCCC
Q 015457 142 QLSDDGCEKFSKIGSLKVLNLGFNE-------ITDECLVHLKGLTNLESL-NLDSCGIGDEGLVNLTGLCNLKCLELSDT 213 (406)
Q Consensus 142 ~~~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 213 (406)
......+..+..+++|+.|+++.+. +. ..+..+..+++|+.+ .+..... ...+..+..+++|+.|+++++
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTC
T ss_pred CcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCC
Confidence 4333355566777888888865543 22 334466788888888 3333211 222333346789999999999
Q ss_pred cCCchhHH-hhcCCCCCcEEeccCCCCChhHHHHhh-CCCCCcEEEC---------CCCCCChHHHHHHh-cCCCCCEEE
Q 015457 214 QVGSSGLR-HLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL---------DARQITDTGLAALT-SLTGLTHLD 281 (406)
Q Consensus 214 ~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l---------~~~~~~~~~~~~~~-~~~~L~~L~ 281 (406)
.+...... .+..+++|+.|++.++ +++.....+. .+++|++|++ ..+.++......+. .+++|+.|.
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 87654433 3568899999999988 5444444443 5899999998 34567776555554 589999999
Q ss_pred ccCCCCChhHHHHhh-cCCCCCEEEcc--C----CCCC----hHH-HHhhhcCCCCCEEeccCCCCCChhHHHHHHc-CC
Q 015457 282 LFGARITDSGAAYLR-NFKNLRSLEIC--G----GGLT----DAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISG-LT 348 (406)
Q Consensus 282 l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~----~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~ 348 (406)
+..+.+++.....+. .+++|++|+++ + +.++ +.+ ...+..+++|+.|++++ .+.+.....+.. ++
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAK 456 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCT
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhch
Confidence 988999887766664 58999999999 4 4565 222 33457789999999977 577777777765 89
Q ss_pred CccEEEeeCCccChhHHHhc-CCCCCccEEEccCCCCChhhHHHHhhcCCCCccccC
Q 015457 349 GLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404 (406)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~ 404 (406)
+|+.|++++|.+++..+..+ ..+++|++|++++|+++...+..+. ..+++|+.|.
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~ 512 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA-SKLETMRSLW 512 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG-GGGGGSSEEE
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH-HhCCCCCEEe
Confidence 99999999999988777776 6799999999999999777666554 4678887764
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=9.3e-31 Score=247.19 Aligned_cols=312 Identities=16% Similarity=0.156 Sum_probs=170.6
Q ss_pred CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEE
Q 015457 34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113 (406)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 113 (406)
.+++.++++++......+..+..+++|++|++++|. +....+..+..+++|++|++++|.+...++..+.++++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 455555555544222222224445555555555532 3333334455555555555555555554444455555555555
Q ss_pred ecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCCh
Q 015457 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193 (406)
Q Consensus 114 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 193 (406)
+++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+... .+..+++|+.+++++|.+..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc
Confidence 555555544333345555555555555555554444555555556666555555432 12344555666665554432
Q ss_pred hhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhc
Q 015457 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273 (406)
Q Consensus 194 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 273 (406)
. ...++|+.|+++++.+...... ..++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..
T Consensus 207 l-----~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 207 L-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp E-----ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred c-----cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 1 2234566666666555433211 124566666666666542 34556666666666666666655555666
Q ss_pred CCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEE
Q 015457 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353 (406)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 353 (406)
+++|+.|++++|.++.. +..+..+++|+.|++++|.+... +..+..+++|+.|++++| .+.... +..+++|+.|
T Consensus 277 l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N-~l~~~~---~~~~~~L~~L 350 (597)
T 3oja_B 277 MQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKNL 350 (597)
T ss_dssp CSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSEE
T ss_pred ccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCC-CCCCcC---hhhcCCCCEE
Confidence 66677777766666653 22334566777777777766644 444566677777777777 444332 4556677777
Q ss_pred EeeCCccChhHH
Q 015457 354 NVSNSRITSAGL 365 (406)
Q Consensus 354 ~l~~~~~~~~~~ 365 (406)
++++|++.....
T Consensus 351 ~l~~N~~~~~~~ 362 (597)
T 3oja_B 351 TLSHNDWDCNSL 362 (597)
T ss_dssp ECCSSCEEHHHH
T ss_pred EeeCCCCCChhH
Confidence 777777665443
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=5e-30 Score=233.32 Aligned_cols=262 Identities=21% Similarity=0.188 Sum_probs=161.9
Q ss_pred cccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCC
Q 015457 4 NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 83 (406)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 83 (406)
.+.++++|++|+++++. +.+. + .+..+++|++|++++|.... . .+..+++|++|++++|. ++.. .+..++
T Consensus 37 ~~~~l~~L~~L~Ls~n~-l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~--~~~~l~~L~~L~Ls~N~-l~~~---~~~~l~ 106 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS-ITDM-T-GIEKLTGLTKLICTSNNITT-L--DLSQNTNLTYLACDSNK-LTNL---DVTPLT 106 (457)
T ss_dssp EHHHHTTCCEEECCSSC-CCCC-T-TGGGCTTCSEEECCSSCCSC-C--CCTTCTTCSEEECCSSC-CSCC---CCTTCT
T ss_pred ChhHcCCCCEEEccCCC-cccC-h-hhcccCCCCEEEccCCcCCe-E--ccccCCCCCEEECcCCC-Ccee---ecCCCC
Confidence 45567777777777775 3333 2 46777777777777776332 2 26677777777777754 3332 266777
Q ss_pred CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457 84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163 (406)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (406)
+|++|++++|.+.+.. +..+++|++|++++|.+.+. .++.+++|+++++++|...... .+..+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 7777777777766532 66777777777777777664 2566777777777777433222 35566777777777
Q ss_pred CCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhH
Q 015457 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243 (406)
Q Consensus 164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 243 (406)
+|.+.+ .+ +..+++|+.|++++|.++.. .+..+++|+.|++++|.+...+ ++.+++|+.|++++|.++...
T Consensus 179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 179 FNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC
T ss_pred CCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC
Confidence 777664 22 56667777777777766544 2556677777777777766532 566677777777777666532
Q ss_pred HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCC
Q 015457 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311 (406)
Q Consensus 244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 311 (406)
+..+++|+.|+++++ +|+.+++++|......+ +..+++|+.|++++|..
T Consensus 250 ---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 250 ---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp ---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred ---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence 344566666665543 33444444444332221 23455566666665543
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=9.1e-30 Score=243.59 Aligned_cols=357 Identities=20% Similarity=0.224 Sum_probs=256.3
Q ss_pred cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC
Q 015457 2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 81 (406)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 81 (406)
|..|.++++|++|++++|. +..+.+.+|.++++|++|++++|......+..|..+++|++|++++|. ++......++.
T Consensus 69 ~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~ 146 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGH 146 (635)
T ss_dssp TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTT
T ss_pred HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhc
Confidence 3568999999999999997 667777789999999999999998554444568999999999999864 56666667889
Q ss_pred CCCccEEEeccCccChh-HHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCC----cEEEcCCccCCh-----------
Q 015457 82 LTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL----FYLNLNRCQLSD----------- 145 (406)
Q Consensus 82 ~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~----------- 145 (406)
+++|++|++++|.+... .+..+..+++|++|++++|.+....+..+..+.++ ..++++.+.+..
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~ 226 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 226 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhh
Confidence 99999999999988654 34667889999999999998876655444322111 122221111100
Q ss_pred ------------hh------------------------------------------------------------------
Q 015457 146 ------------DG------------------------------------------------------------------ 147 (406)
Q Consensus 146 ------------~~------------------------------------------------------------------ 147 (406)
..
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT 306 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence 00
Q ss_pred --------------hhhccCCCCccEEEecCCccchhHH-------------------hhhcCCCCCCeEEccCCCCChh
Q 015457 148 --------------CEKFSKIGSLKVLNLGFNEITDECL-------------------VHLKGLTNLESLNLDSCGIGDE 194 (406)
Q Consensus 148 --------------~~~~~~l~~L~~L~l~~~~~~~~~~-------------------~~~~~~~~L~~L~l~~~~~~~~ 194 (406)
...+.....++.|++.++.+....+ .....+++|+.++++.+.+...
T Consensus 307 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 307 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp TCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred ccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccc
Confidence 0001112344555555443321111 0112457788888887765321
Q ss_pred --hhHhhhC-----------------------CCCCCEEEcCCCcCCch-hHHhhcCCCCCcEEeccCCCCChhHHHHhh
Q 015457 195 --GLVNLTG-----------------------LCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLA 248 (406)
Q Consensus 195 --~~~~~~~-----------------------~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 248 (406)
.+..... ++.|+.+++..+..... ....+..+++++.++++.+.+....+..+.
T Consensus 387 ~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~ 466 (635)
T 4g8a_A 387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 466 (635)
T ss_dssp EECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred cccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence 1222233 34455555544432221 223456788999999999988777677778
Q ss_pred CCCCCcEEECCCCCCCh-HHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCE
Q 015457 249 GLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327 (406)
Q Consensus 249 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 327 (406)
.++.++.|++++|.... ..+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence 89999999999987544 33456778899999999999999888888999999999999999999987778899999999
Q ss_pred EeccCCCCCChhHHHHHHcC-CCccEEEeeCCccC
Q 015457 328 LNLSQNCNLTDKTLELISGL-TGLVSLNVSNSRIT 361 (406)
Q Consensus 328 L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~ 361 (406)
|++++| .+....+..+..+ ++|+.|++++|++.
T Consensus 547 L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 547 LDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp EECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred EECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999999 7888878888877 68999999998875
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.9e-29 Score=219.89 Aligned_cols=289 Identities=20% Similarity=0.197 Sum_probs=155.2
Q ss_pred CccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEc
Q 015457 59 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138 (406)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 138 (406)
+++.++++++. ++..+ .. -.+++++|+++++.+.+.....+.++++|++|++++|.+....|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~-l~~lp-~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVP-KD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSC-CCSCC-CS--CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCC-ccccC-cc--CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 56777776643 22221 11 1256777777777776655556677777777777777776665666667777777777
Q ss_pred CCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCCh--hhhHhhhCCCCCCEEEcCCCcCC
Q 015457 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVG 216 (406)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~ 216 (406)
++|.+... +..+ .++|+.|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.|+++++.+.
T Consensus 108 s~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCcc-Chhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 77666532 2222 1566666666666655555555666666666666665542 22334445555555555555543
Q ss_pred chhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhh
Q 015457 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296 (406)
Q Consensus 217 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 296 (406)
..... . .++|++|++++|.++...+..+..+++|+.|++++|.++...+..+.
T Consensus 185 ~l~~~---~------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 185 TIPQG---L------------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp SCCSS---C------------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred cCCcc---c------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 32110 1 13444444444444443333444445555555555554444333444
Q ss_pred cCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHH------cCCCccEEEeeCCccCh--hHHHhc
Q 015457 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS------GLTGLVSLNVSNSRITS--AGLRHL 368 (406)
Q Consensus 297 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~------~~~~L~~L~l~~~~~~~--~~~~~l 368 (406)
.+++|++|++++|.+... +..+..+++|++|++++| .+.......++ ..+.++.+++.+|++.. ..+..+
T Consensus 238 ~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 238 NTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp GSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred CCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 455555555555555432 333444555555555555 44443333332 23566777777777643 334556
Q ss_pred CCCCCccEEEccCCC
Q 015457 369 KPLKNLRSLTLESCK 383 (406)
Q Consensus 369 ~~~~~L~~l~l~~~~ 383 (406)
..+++++.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 667777777777764
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=9e-29 Score=216.80 Aligned_cols=288 Identities=17% Similarity=0.193 Sum_probs=212.6
Q ss_pred CCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEe
Q 015457 35 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114 (406)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 114 (406)
+++.++++++. ....+..+ .+++++|+++++. ++......+..+++|++|++++|.+....+..+.++++|++|++
T Consensus 32 ~l~~l~~~~~~-l~~lp~~~--~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKDL--PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSC-CCSCCCSC--CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCC-ccccCccC--CCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 78999998765 33344333 3789999999864 66666667889999999999999998877788999999999999
Q ss_pred cCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccch--hHHhhhcCCCCCCeEEccCCCCC
Q 015457 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIG 192 (406)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~ 192 (406)
++|.+... |..+ .++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+.
T Consensus 108 s~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCcc-Chhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99988764 3332 3799999999999998778889999999999999998863 45667888999999999999886
Q ss_pred hhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHh
Q 015457 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 272 (406)
Q Consensus 193 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 272 (406)
.... .+ .++|+.|+++++.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++.. +..+.
T Consensus 185 ~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~ 260 (330)
T 1xku_A 185 TIPQ-GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLA 260 (330)
T ss_dssp SCCS-SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTT
T ss_pred cCCc-cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-Chhhc
Confidence 5432 22 37899999999998877777788888999999988888776555667777888888888777753 23455
Q ss_pred cCCCCCEEEccCCCCChhHHHHhhc------CCCCCEEEccCCCCCh--HHHHhhhcCCCCCEEeccCC
Q 015457 273 SLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQN 333 (406)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 333 (406)
.+++|++|++++|.++......+.. .+.++.+++.+|.+.. ..+..+..+++++.+++++|
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 6677777777777776544433321 2455555555555443 12233444455555555544
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=9.6e-29 Score=224.89 Aligned_cols=281 Identities=21% Similarity=0.164 Sum_probs=201.6
Q ss_pred cccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCC
Q 015457 4 NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 83 (406)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 83 (406)
.+.++++|++|++++|. +++.. +..+++|++|++++|.... . .+..+++|++|++++|. ++.. .+..++
T Consensus 59 ~l~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N~l~~-~--~~~~l~~L~~L~L~~N~-l~~l---~~~~l~ 127 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSNKLTN-L--DVTPLTKLTYLNCDTNK-LTKL---DVSQNP 127 (457)
T ss_dssp TGGGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSCCSC-C--CCTTCTTCCEEECCSSC-CSCC---CCTTCT
T ss_pred hhcccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCCCCce-e--ecCCCCcCCEEECCCCc-CCee---cCCCCC
Confidence 57889999999999997 44442 7899999999999987443 2 38889999999999964 4433 278999
Q ss_pred CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457 84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163 (406)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (406)
+|++|++++|.+.+. .+..+++|+.|++++|...+.. .+..+++|++|++++|.+.... +..+++|+.|+++
T Consensus 128 ~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~ 199 (457)
T 3bz5_A 128 LLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCD 199 (457)
T ss_dssp TCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECC
T ss_pred cCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---cccCCCCCEEECc
Confidence 999999999998874 3788999999999999544433 4678999999999999988742 7788999999999
Q ss_pred CCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCCh--
Q 015457 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-- 241 (406)
Q Consensus 164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-- 241 (406)
+|.+.+. .+..+++|+.|++++|.++.. + +..+++|+.|++++|.+.... ++.+++|+.|+++++.+..
T Consensus 200 ~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 200 TNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEID 270 (457)
T ss_dssp SSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCC
T ss_pred CCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEE
Confidence 9998854 377899999999999998764 2 778999999999999987754 4556777776665543321
Q ss_pred --------hHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCCh
Q 015457 242 --------GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313 (406)
Q Consensus 242 --------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 313 (406)
..+ ++.+++|+.|++++|...+..+ ...++|+.++ +..+++|++|++++|.+++
T Consensus 271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~---~~~~~L~~L~-------------l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD---CQAAGITELD-------------LSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE---CTTCCCSCCC-------------CTTCTTCCEEECTTCCCSC
T ss_pred CCCCccCCccc--ccccccCCEEECCCCcccceec---cCCCcceEec-------------hhhcccCCEEECCCCcccc
Confidence 111 2344556666665554322111 0112222222 2233556666666666655
Q ss_pred HHHHhhhcCCCCCEEeccCC
Q 015457 314 AGVKHIKDLSSLTLLNLSQN 333 (406)
Q Consensus 314 ~~~~~~~~~~~L~~L~l~~~ 333 (406)
. .+..+++|+.|++++|
T Consensus 333 l---~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 333 L---DVSHNTKLKSLSCVNA 349 (457)
T ss_dssp C---CCTTCTTCSEEECCSS
T ss_pred c---ccccCCcCcEEECCCC
Confidence 3 2555666666666666
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.4e-29 Score=222.13 Aligned_cols=288 Identities=19% Similarity=0.210 Sum_probs=152.7
Q ss_pred CccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEc
Q 015457 59 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138 (406)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 138 (406)
+++.++++++. ++..+ ..+ .+++++|+++++.+....+..+.++++|++|++++|.+....+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~-l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVP-KEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSC-CSSCC-SCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCC-ccccC-CCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 56777776643 22221 111 356777777777766555556667777777777777766665666666777777777
Q ss_pred CCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCCh--hhhHhhhCCCCCCEEEcCCCcCC
Q 015457 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVG 216 (406)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~ 216 (406)
++|.+..... .+. ++|+.|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+ +|+.++++++.+.
T Consensus 110 ~~n~l~~l~~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEIPP-NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSCCS-SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCccCc-ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 7766653222 221 566666666666654444445566666666666665532 222233333 4555555555443
Q ss_pred chhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhh
Q 015457 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296 (406)
Q Consensus 217 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 296 (406)
.... .+ .++|++|++++|.++......+..+++|+.|++++|.++...+..+.
T Consensus 186 ~l~~-~~--------------------------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 186 GIPK-DL--------------------------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp SCCS-SS--------------------------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred ccCc-cc--------------------------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 3211 00 13444444444444443333344445555555555555444444444
Q ss_pred cCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHc------CCCccEEEeeCCccC--hhHHHhc
Q 015457 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG------LTGLVSLNVSNSRIT--SAGLRHL 368 (406)
Q Consensus 297 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~~--~~~~~~l 368 (406)
.+++|++|++++|.+... +..+..+++|+.|++++| .+.......++. .+.|+.|++.+|++. ...+..+
T Consensus 239 ~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp GCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred CCCCCCEEECCCCcCeec-ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 555555555555555432 333455555555555555 444433333322 355667777777665 3444556
Q ss_pred CCCCCccEEEccCCC
Q 015457 369 KPLKNLRSLTLESCK 383 (406)
Q Consensus 369 ~~~~~L~~l~l~~~~ 383 (406)
..+++|+.+++++|+
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 667777777777664
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=2.7e-28 Score=213.86 Aligned_cols=287 Identities=16% Similarity=0.184 Sum_probs=211.8
Q ss_pred CCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEe
Q 015457 35 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114 (406)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 114 (406)
+++.++++++.. ...+..+ .++|++|++++|. +....+..+..+++|++|++++|.+....+..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l-~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGL-KAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCC-SSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCc-cccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 689999988763 3344434 3789999999864 55555667889999999999999998877788999999999999
Q ss_pred cCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccch--hHHhhhcCCCCCCeEEccCCCCC
Q 015457 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIG 192 (406)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~ 192 (406)
++|.+... |..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|.+.
T Consensus 110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 99988764 33322 799999999999987777778999999999999998863 445666666 8999999999876
Q ss_pred hhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHh
Q 015457 193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 272 (406)
Q Consensus 193 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 272 (406)
.... .+ .++|+.|+++++.+.......+..+++|+.|++++|.++...+..+..+++|+.|++++|.++..+ ..+.
T Consensus 186 ~l~~-~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~~l~ 261 (332)
T 2ft3_A 186 GIPK-DL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLP 261 (332)
T ss_dssp SCCS-SS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC-TTGG
T ss_pred ccCc-cc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC-hhhh
Confidence 5322 22 368999999999888776677788888999999888887766656777788888888888777542 3456
Q ss_pred cCCCCCEEEccCCCCChhHHHHhhc------CCCCCEEEccCCCCC--hHHHHhhhcCCCCCEEeccCC
Q 015457 273 SLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLT--DAGVKHIKDLSSLTLLNLSQN 333 (406)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~ 333 (406)
.+++|+.|++++|.++......+.. .++|+.|++.+|.+. ...+..+..+++|+.+++++|
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 6777777777777776654444332 345666666666555 233344555566666666555
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=3.6e-28 Score=220.95 Aligned_cols=267 Identities=18% Similarity=0.155 Sum_probs=128.7
Q ss_pred CCccEEEeccCccChhHHHhhhcC-CCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEE
Q 015457 83 TNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161 (406)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (406)
++|++|++++|.+.+.. .. ++|++|++++|.+.+. | .++.+++|++|++++|.+.. .+.. .++|++|+
T Consensus 111 ~~L~~L~l~~n~l~~l~-----~~~~~L~~L~L~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~ 179 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALS-----DLPPLLEYLGVSNNQLEKL-P-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIA 179 (454)
T ss_dssp TTCCEEECCSSCCSCCC-----SCCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred CCCcEEECCCCccCccc-----CCCCCCCEEECcCCCCCCC-c-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEE
Confidence 55666666665554311 12 4667777776666653 3 46666667777776666553 2211 23566666
Q ss_pred ecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCCh
Q 015457 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241 (406)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 241 (406)
+++|.+.+ .| .+..+++|+.|++++|.+..... ..++|+.|++++|.+.... .++.+++|+.|++++|.++.
T Consensus 180 L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 180 AGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS
T ss_pred CcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC----CcCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCc
Confidence 66666553 23 35566666666666665543111 1235556666555554322 24455555555555555443
Q ss_pred hHHHHhhCCCCCcEEECCCCCCChHHHHH---------------H-hcCCCCCEEEccCCCCChhHHHHhhcC-CCCCEE
Q 015457 242 GSLRKLAGLSSLKSLNLDARQITDTGLAA---------------L-TSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSL 304 (406)
Q Consensus 242 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---------------~-~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L 304 (406)
.. ...++|+.|++++|.+.+.+... + .-.++|+.|++++|.++.. ... ++|++|
T Consensus 252 l~----~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L 322 (454)
T 1jl5_A 252 LP----DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL-----CDLPPSLEEL 322 (454)
T ss_dssp CC----SCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE-----CCCCTTCCEE
T ss_pred cc----ccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcc-----cCCcCcCCEE
Confidence 11 01244555555554444321000 0 0113455555555544431 122 466666
Q ss_pred EccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccCh--hHHHhcCCC-----------
Q 015457 305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHLKPL----------- 371 (406)
Q Consensus 305 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~----------- 371 (406)
++++|.+.+. +. .+++|+.|++++| .+..... .+++|+.|++++|++++ ..+..+..+
T Consensus 323 ~Ls~N~l~~l-p~---~~~~L~~L~L~~N-~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~ 393 (454)
T 1jl5_A 323 NVSNNKLIEL-PA---LPPRLERLIASFN-HLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393 (454)
T ss_dssp ECCSSCCSCC-CC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------
T ss_pred ECCCCccccc-cc---cCCcCCEEECCCC-ccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccc
Confidence 6666666542 21 2467777777777 4553222 35677777777777665 333344333
Q ss_pred --CCccEEEccCCCCCh
Q 015457 372 --KNLRSLTLESCKVTA 386 (406)
Q Consensus 372 --~~L~~l~l~~~~~~~ 386 (406)
++|+.|++++|++..
T Consensus 394 ~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 394 LPQNLKQLHVETNPLRE 410 (454)
T ss_dssp -----------------
T ss_pred ccCcCCEEECCCCcCCc
Confidence 667777777777664
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.7e-27 Score=215.19 Aligned_cols=338 Identities=17% Similarity=0.106 Sum_probs=222.5
Q ss_pred cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCc-------------cEEeecCC
Q 015457 2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL-------------ESLNIKWC 68 (406)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~ 68 (406)
|+.+ +.++|++|+++++. + +..|+.++++++|++|++++|......+..++.+++| ++|++++|
T Consensus 5 p~~~-~~~~L~~L~l~~n~-l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSN-L-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred cccc-ccccchhhhcccCc-h-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 4444 46899999999987 4 4567789999999999999988665667777777765 99999986
Q ss_pred CCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhh
Q 015457 69 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 148 (406)
Q Consensus 69 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 148 (406)
. ++.... ..++|++|+++++.+.+.+ ..+++|++|++++|.+.+. +. ..++|++|++++|.+.. .+
T Consensus 82 ~-l~~lp~----~~~~L~~L~l~~n~l~~lp----~~~~~L~~L~l~~n~l~~l-~~---~~~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 82 G-LSSLPE----LPPHLESLVASCNSLTELP----ELPQSLKSLLVDNNNLKAL-SD---LPPLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp C-CSCCCS----CCTTCSEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCC-CS---CCTTCCEEECCSSCCSS-CC
T ss_pred c-cccCCC----CcCCCCEEEccCCcCCccc----cccCCCcEEECCCCccCcc-cC---CCCCCCEEECcCCCCCC-Cc
Confidence 5 333221 2489999999999888632 2347899999999988763 21 12699999999999886 44
Q ss_pred hhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCC
Q 015457 149 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228 (406)
Q Consensus 149 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~ 228 (406)
.++.+++|++|++++|.+.+ +|.. .++|++|++++|.+... + .+..+++|+.|++++|.+.... ...++
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~----~~~~~ 216 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP----DLPLS 216 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----CCCTT
T ss_pred -ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC----CCcCc
Confidence 58899999999999998874 3432 36999999999988764 3 5788999999999999876532 12368
Q ss_pred CcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccC
Q 015457 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308 (406)
Q Consensus 229 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 308 (406)
|+.|++++|.+... + .+..+++|+.|++++|.++..+. .+++|+.|++++|.++... ..+++|++|++++
T Consensus 217 L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~ 286 (454)
T 1jl5_A 217 LESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSE 286 (454)
T ss_dssp CCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCS
T ss_pred ccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccC----cccCcCCEEECcC
Confidence 99999999988753 3 47789999999999998887431 3478888888888876522 1235677777776
Q ss_pred CCCChHH--HHh-------------hhcC-CCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCC
Q 015457 309 GGLTDAG--VKH-------------IKDL-SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 372 (406)
Q Consensus 309 ~~~~~~~--~~~-------------~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 372 (406)
|.+++.. +.. +..+ ++|+.|++++| .+..... .+++|+.|++++|.++.... .++
T Consensus 287 N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~----~~~~L~~L~L~~N~l~~lp~----~l~ 357 (454)
T 1jl5_A 287 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA----LPPRLERLIASFNHLAEVPE----LPQ 357 (454)
T ss_dssp SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCCCC----CCT
T ss_pred CccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccc----cCCcCCEEECCCCccccccc----hhh
Confidence 6665521 000 1112 36666666666 4443211 24677777777777664322 357
Q ss_pred CccEEEccCCCCCh
Q 015457 373 NLRSLTLESCKVTA 386 (406)
Q Consensus 373 ~L~~l~l~~~~~~~ 386 (406)
+|++|++++|++..
T Consensus 358 ~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 358 NLKQLHVEYNPLRE 371 (454)
T ss_dssp TCCEEECCSSCCSS
T ss_pred hccEEECCCCCCCc
Confidence 78888888887765
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=5.9e-29 Score=215.64 Aligned_cols=228 Identities=18% Similarity=0.197 Sum_probs=114.7
Q ss_pred CCccEEEeccCccCh--hHHHhhhcCCCCCEEEecC-CCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccE
Q 015457 83 TNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 159 (406)
Q Consensus 83 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (406)
.++++|+++++.+.+ ..+..+.++++|++|++++ +.+.+..|..+..+++|++|++++|.+....+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 345555555555554 3344555555566666653 4444444555555566666666655555445555555566666
Q ss_pred EEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCC-CCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCC
Q 015457 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238 (406)
Q Consensus 160 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 238 (406)
|++++|.+.+..|..+..+++|++|++++|.+....+..+..++ .|+.|++++|.+....+..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 66666555544555555556666666666555444444455554 555555555554433333444433 5555555554
Q ss_pred CChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCC
Q 015457 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312 (406)
Q Consensus 239 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 312 (406)
++...+..+..+++|+.|++++|.+...... +..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 4433333444445555555555444432111 233444444444444444333333444444444444444443
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=2.1e-28 Score=212.16 Aligned_cols=249 Identities=17% Similarity=0.145 Sum_probs=193.4
Q ss_pred CCccEEeecCCCCcCc--CccccccCCCCccEEEecc-CccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCc
Q 015457 58 MKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134 (406)
Q Consensus 58 ~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 134 (406)
.++++|+++++. +.+ ..+..+..+++|++|++++ +.+.+..+..+.++++|++|++++|.+.+..|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578888888754 343 4456777888888888884 777666666778888888888888888766677788888888
Q ss_pred EEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCC-CCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCC
Q 015457 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213 (406)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 213 (406)
+|++++|.+....+..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+....+..+..+. |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 888888887766777788888888888888888766777777776 888888888877666666666666 888888888
Q ss_pred cCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHH
Q 015457 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293 (406)
Q Consensus 214 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 293 (406)
.+....+..+..+++|+.|++++|.++...+. +..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 87766677778888888888888877654433 66778899999998888765566778888999999999888765444
Q ss_pred HhhcCCCCCEEEccCCC
Q 015457 294 YLRNFKNLRSLEICGGG 310 (406)
Q Consensus 294 ~~~~~~~L~~L~l~~~~ 310 (406)
. ..+++|+.+++.+|.
T Consensus 287 ~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNK 302 (313)
T ss_dssp S-TTGGGSCGGGTCSSS
T ss_pred C-ccccccChHHhcCCC
Confidence 3 667888888888876
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.4e-27 Score=209.68 Aligned_cols=282 Identities=17% Similarity=0.180 Sum_probs=167.1
Q ss_pred CCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEE
Q 015457 81 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160 (406)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (406)
.|+.....+.+++.++..+. .+ .++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 34555556666666654332 12 2478888888887777655567777888888888877776666667777788888
Q ss_pred EecCCccchhHHhhhcCCCCCCeEEccCCCCChhhh-HhhhCCCCCCEEEcCCC-cCCchhHHhhcCCCCCcEEeccCCC
Q 015457 161 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTG 238 (406)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~ 238 (406)
++++|.+....+..+..+++|++|++++|.+..... ..+..+++|+.|+++++ .+.......++.+++|+.|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 888777775555556777778888887777654433 34566777777777776 3444444556666777777777776
Q ss_pred CChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHH---hhcCCCCCEEEccCCCCChHH
Q 015457 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY---LRNFKNLRSLEICGGGLTDAG 315 (406)
Q Consensus 239 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~ 315 (406)
++...+..+..+++|++|++++|.+...+...+..+++|+.|++++|.++...... ....+.++.+++.++.+.+..
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 66655555666666666666666666554444445666666666666655422111 122344445555544444321
Q ss_pred HHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 316 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 386 (406)
.. ..+..+..+++|+.|++++|.++......+..+++|++|++++|++..
T Consensus 266 l~---------------------~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 266 LF---------------------QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HH---------------------HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hh---------------------hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 11 122334445555555555555544333333445555555555555443
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=7.5e-27 Score=206.50 Aligned_cols=275 Identities=21% Similarity=0.144 Sum_probs=219.7
Q ss_pred CCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcE
Q 015457 56 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135 (406)
Q Consensus 56 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 135 (406)
.|+.....+.+++ .++..+. . -.++|++|+++++.+.......+.++++|++|++++|.+....+..+..+++|++
T Consensus 29 ~C~~~~~c~~~~~-~l~~iP~-~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSG-SLNSIPS-G--LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCST-TCSSCCT-T--CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCC-Ccccccc-c--ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3555555666653 3333322 2 2368999999999999877778899999999999999999887788999999999
Q ss_pred EEcCCccCChhhhhhccCCCCccEEEecCCccchhHH-hhhcCCCCCCeEEccCC-CCChhhhHhhhCCCCCCEEEcCCC
Q 015457 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 213 (406)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~l~l~~~ 213 (406)
|++++|.+....+..+..+++|++|++++|.+..... ..+..+++|+.|++++| .+....+..+..+++|+.|+++++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 9999999987766778999999999999999884333 36788999999999998 466666677888999999999999
Q ss_pred cCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHH---HHHhcCCCCCEEEccCCCCChh
Q 015457 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL---AALTSLTGLTHLDLFGARITDS 290 (406)
Q Consensus 214 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~ 290 (406)
.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.++.... ........++.+++.++.+.+.
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 9988777888999999999999999887666566678999999999998887432 2233567899999999998863
Q ss_pred ----HHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCC
Q 015457 291 ----GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334 (406)
Q Consensus 291 ----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 334 (406)
.+..+..+++|++|++++|.++......+..+++|++|++++|+
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 34556778888888888888876544445677888888888884
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=6e-26 Score=194.54 Aligned_cols=203 Identities=24% Similarity=0.307 Sum_probs=101.7
Q ss_pred CCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCc-cchhHHhhhcCCCCCCeEE
Q 015457 107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLN 185 (406)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 185 (406)
++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 456666666666655544455556666666666665555445555555556666665554 4433344455555555555
Q ss_pred ccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCCh
Q 015457 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265 (406)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 265 (406)
+++|.+....+..+..+++|+.|+++++.+.......++ .+++|++|++++|.++.
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR------------------------DLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT------------------------TCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc------------------------cCCCccEEECCCCcccc
Confidence 555554443333344444444444444444333333333 34444444444444443
Q ss_pred HHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCC
Q 015457 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333 (406)
Q Consensus 266 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 333 (406)
.+...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 33233344444555555555444443444444555555555555555444444445555555555555
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.6e-25 Score=204.57 Aligned_cols=246 Identities=23% Similarity=0.266 Sum_probs=164.4
Q ss_pred CCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccC
Q 015457 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188 (406)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 188 (406)
...++.++..+... |..+ .+++++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEV-PQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCcc-CCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 35566666665553 3322 25788888888888777777778888888888888877766667777788888888888
Q ss_pred CCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCC-CCChhHHHHhhCCCCCcEEECCCCCCChHH
Q 015457 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTG 267 (406)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 267 (406)
|.+....+..+..+++|+.|++++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+...
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 8777666666777778888888887777666666777777777777763 44443334456667777777777766653
Q ss_pred HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC
Q 015457 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347 (406)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 347 (406)
..+..+++|+.|++++|.++...+..+..+++|++|++++|.+....+..+..+++|+.|++++| .+.......+..+
T Consensus 212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPL 289 (452)
T ss_dssp -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTC
T ss_pred -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccc
Confidence 23455666666666666666655555666666666666666666655555566666666666666 5555444455556
Q ss_pred CCccEEEeeCCcc
Q 015457 348 TGLVSLNVSNSRI 360 (406)
Q Consensus 348 ~~L~~L~l~~~~~ 360 (406)
++|+.|++++|++
T Consensus 290 ~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 290 RYLVELHLHHNPW 302 (452)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEccCCCc
Confidence 6666666666654
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.9e-25 Score=203.36 Aligned_cols=246 Identities=23% Similarity=0.245 Sum_probs=181.2
Q ss_pred CCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccC
Q 015457 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188 (406)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 188 (406)
...++.++..+... |..+ .++++.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREV-PDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSC-CSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcC-CCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 45677766666654 3322 36788899988888877777888888899999988888766667788888888888888
Q ss_pred CCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCC-CCChhHHHHhhCCCCCcEEECCCCCCChHH
Q 015457 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTG 267 (406)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 267 (406)
|.++......+..+++|+.|++++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.++..+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 8887666667778888888888888887766667778888888888774 444444445667788888888888777642
Q ss_pred HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC
Q 015457 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347 (406)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 347 (406)
.+..+++|+.|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++| .+.......+..+
T Consensus 202 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 278 (440)
T 3zyj_A 202 --NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPL 278 (440)
T ss_dssp --CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSC
T ss_pred --ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccc
Confidence 3556677777777777777666666777777777777777777766666667777777777777 5666555556667
Q ss_pred CCccEEEeeCCcc
Q 015457 348 TGLVSLNVSNSRI 360 (406)
Q Consensus 348 ~~L~~L~l~~~~~ 360 (406)
++|+.|++++|++
T Consensus 279 ~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 279 HHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEcCCCCc
Confidence 7777777777764
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=4.9e-26 Score=197.88 Aligned_cols=259 Identities=17% Similarity=0.187 Sum_probs=177.5
Q ss_pred cEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCC
Q 015457 86 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165 (406)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (406)
+..+++.+.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 334444454444444444555667777777777766666667777777777777776654332 666777777777777
Q ss_pred ccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHH
Q 015457 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245 (406)
Q Consensus 166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 245 (406)
.+.+ +...++|+.|++++|.+....+. .+++|+.|++++|.+.......++.+++|+.|++++|.++...+.
T Consensus 91 ~l~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 91 YVQE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EEEE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred cccc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 6653 22346777777777776554332 356677777777777766555666677788888887777765554
Q ss_pred Hhh-CCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCC
Q 015457 246 KLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 324 (406)
Q Consensus 246 ~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 324 (406)
.+. .+++|++|++++|.++... ....+++|++|++++|.++...+. +..+++|++|++++|.++.. +..+..+++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~ 238 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQN 238 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTT
T ss_pred HHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCC
Confidence 443 5678888888888777642 223477888888888888765433 67788888888888888864 555677888
Q ss_pred CCEEeccCCCCCC-hhHHHHHHcCCCccEEEeeCCc
Q 015457 325 LTLLNLSQNCNLT-DKTLELISGLTGLVSLNVSNSR 359 (406)
Q Consensus 325 L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~ 359 (406)
|+.|++++| .+. ...+..+..+++|+.+++.++.
T Consensus 239 L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 239 LEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCEEEccCC-CccCcCHHHHHhccccceEEECCCch
Confidence 999999988 555 6677778888888888888654
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=2e-25 Score=203.87 Aligned_cols=245 Identities=19% Similarity=0.200 Sum_probs=211.3
Q ss_pred ccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecC
Q 015457 85 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164 (406)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (406)
.+.++..+..+...+ ..+ .++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVP-QGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccC-CCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456666666655432 212 26899999999999998888899999999999999999988888899999999999999
Q ss_pred CccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCC-CcCCchhHHhhcCCCCCcEEeccCCCCChhH
Q 015457 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGS 243 (406)
Q Consensus 165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 243 (406)
|.+....+..+..+++|++|++++|.+.......+..+++|+.|++++ +.+.......+..+++|+.|++++|.++..
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 999876677788999999999999999877777888999999999998 455555556688899999999999988864
Q ss_pred HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCC
Q 015457 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323 (406)
Q Consensus 244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 323 (406)
..+..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.++......+..++
T Consensus 212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 2467889999999999999988778889999999999999999988788889999999999999999987777788899
Q ss_pred CCCEEeccCCC
Q 015457 324 SLTLLNLSQNC 334 (406)
Q Consensus 324 ~L~~L~l~~~~ 334 (406)
+|+.|++++|+
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 99999999985
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=2.1e-25 Score=203.01 Aligned_cols=246 Identities=19% Similarity=0.207 Sum_probs=212.0
Q ss_pred ccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecC
Q 015457 85 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164 (406)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (406)
.+.++..+..+...+. .+ .++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++
T Consensus 45 ~~~v~c~~~~l~~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPD-GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCS-CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCC-CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4566666666654332 22 26899999999999998788899999999999999999988888999999999999999
Q ss_pred CccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCC-cCCchhHHhhcCCCCCcEEeccCCCCChhH
Q 015457 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGS 243 (406)
Q Consensus 165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 243 (406)
|.+....+..+..+++|++|++++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.++...
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 9998666667899999999999999998777778889999999999984 455555567888999999999999888642
Q ss_pred HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCC
Q 015457 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323 (406)
Q Consensus 244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 323 (406)
.+..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.++......+..++
T Consensus 202 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 --NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp --CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred --ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 467889999999999999988778888999999999999999988788888999999999999999988777788899
Q ss_pred CCCEEeccCCCC
Q 015457 324 SLTLLNLSQNCN 335 (406)
Q Consensus 324 ~L~~L~l~~~~~ 335 (406)
+|+.|++++|+.
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 999999999853
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=6.2e-26 Score=196.61 Aligned_cols=247 Identities=22% Similarity=0.243 Sum_probs=139.7
Q ss_pred CEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchh--HHhhhcCCCCCCeEEcc
Q 015457 110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE--CLVHLKGLTNLESLNLD 187 (406)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~ 187 (406)
+.++.+++.++.. |.. ..+++++|+++++.+.......+..+++|+.|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~i-p~~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSC-CSC--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccC-CCC--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3566666655553 322 235777777777777655555567777777777777766532 13444556777777777
Q ss_pred CCCCChhhhHhhhCCCCCCEEEcCCCcCCchhH-HhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCCh-
Q 015457 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD- 265 (406)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~- 265 (406)
+|.+... +..+..+++|+.|+++++.+..... ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 7765432 3335566777777777766554432 345566666666666666555444445556666666666665544
Q ss_pred HHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHH
Q 015457 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345 (406)
Q Consensus 266 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 345 (406)
..+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++| .+....+..+.
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 244 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ 244 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CCcccCHHHHH
Confidence 12234445555666666665555544444555555555555555555543334445555555555555 44444444444
Q ss_pred cCC-CccEEEeeCCccC
Q 015457 346 GLT-GLVSLNVSNSRIT 361 (406)
Q Consensus 346 ~~~-~L~~L~l~~~~~~ 361 (406)
.++ +|+.|++++|++.
T Consensus 245 ~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCTTCCEEECTTCCEE
T ss_pred hhhccCCEEEccCCCee
Confidence 442 5555555555543
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=3.8e-25 Score=189.56 Aligned_cols=224 Identities=23% Similarity=0.247 Sum_probs=182.4
Q ss_pred cEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCC
Q 015457 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213 (406)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 213 (406)
+.++.++..+... |.. ..++++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++++
T Consensus 14 ~~~~c~~~~l~~i-p~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-CcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 5677777766643 222 2468999999999888766677888899999999999887776777888899999999988
Q ss_pred c-CCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHH
Q 015457 214 Q-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292 (406)
Q Consensus 214 ~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 292 (406)
. +....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++..+...+..+++|+.|++++|.++...+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 666656777888999999999988887666677788899999999988887665667788889999999988887666
Q ss_pred HHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457 293 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361 (406)
Q Consensus 293 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 361 (406)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|++.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence 66778888999999998888877777888888999999888 777777777888888899999888865
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=9.7e-25 Score=189.10 Aligned_cols=226 Identities=20% Similarity=0.231 Sum_probs=120.1
Q ss_pred CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChh--hHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEE
Q 015457 83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA--CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160 (406)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (406)
++|++|+++++.+...+...+.++++|++|++++|.+... .+..+..+++|++|++++|.+.. .+..+..+++|+.|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 4566666666666544444456666666666666665532 13444556667777776666553 33345566667777
Q ss_pred EecCCccchhHH-hhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCc-hhHHhhcCCCCCcEEeccCCC
Q 015457 161 NLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTG 238 (406)
Q Consensus 161 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 238 (406)
++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|+.|+++++.+.. ..+..+..+++|+.|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 776666553322 345566666666666666554444445555666666666655433 223334444555555555555
Q ss_pred CChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHh
Q 015457 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 318 (406)
Q Consensus 239 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 318 (406)
++...+..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.+.+..+..
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFS------------------------LDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSB------------------------CCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCc------------------------cChhhccCcccCCEeECCCCCCcccCHHH
Confidence 444333334444444444444444443 33333444455555555555554444444
Q ss_pred hhcCC-CCCEEeccCC
Q 015457 319 IKDLS-SLTLLNLSQN 333 (406)
Q Consensus 319 ~~~~~-~L~~L~l~~~ 333 (406)
+..++ +|+.|++++|
T Consensus 243 ~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CCCCCTTCCEEECTTC
T ss_pred HHhhhccCCEEEccCC
Confidence 44442 5555555555
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=3e-26 Score=199.20 Aligned_cols=259 Identities=17% Similarity=0.159 Sum_probs=199.4
Q ss_pred CCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccC
Q 015457 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188 (406)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 188 (406)
++..+++.+.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455666666655545555667899999999999988777888999999999999998875443 78889999999999
Q ss_pred CCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHH
Q 015457 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268 (406)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 268 (406)
|.+.... ..++|+.|+++++.+..... ..+++|+.|++++|.++...+..+..+++|+.|++++|.+.....
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 8765332 34889999999998876543 346789999999998887666667778899999999998887655
Q ss_pred HHH-hcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC
Q 015457 269 AAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347 (406)
Q Consensus 269 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 347 (406)
..+ ..+++|++|++++|.++... ....+++|++|++++|.+++..+ .+..+++|+.|++++| .+.. .+..+..+
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N-~l~~-l~~~~~~l 236 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN-KLVL-IEKALRFS 236 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS-CCCE-ECTTCCCC
T ss_pred HHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCC-cccc-hhhHhhcC
Confidence 544 46788999999999887652 22347889999999998887644 4777889999999988 6664 34456778
Q ss_pred CCccEEEeeCCccC-hhHHHhcCCCCCccEEEccCC
Q 015457 348 TGLVSLNVSNSRIT-SAGLRHLKPLKNLRSLTLESC 382 (406)
Q Consensus 348 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~l~l~~~ 382 (406)
++|+.|++++|++. +..+..+..+++|+.++++++
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 88999999999888 555666677888888877743
No 65
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=5.9e-23 Score=180.46 Aligned_cols=253 Identities=19% Similarity=0.213 Sum_probs=160.0
Q ss_pred CCCEEEecCCCCChhhHHHHhcC--CCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchh-HHhhhcCCCCCCeE
Q 015457 108 KLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESL 184 (406)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 184 (406)
.++.++++++.+. +..+..+ ++++.+++.++.+.+..+. +..+++|+.|++++|.+... .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3566666666554 2334444 6677777777666544333 34567777777777776654 56666777777888
Q ss_pred EccCCCCChhhhHhhhCCCCCCEEEcCCC-cCCch-hHHhhcCCCCCcEEeccCC-CCChh-HHHHhhCCC-CCcEEECC
Q 015457 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSS-GLRHLSGLTNLESINLSFT-GISDG-SLRKLAGLS-SLKSLNLD 259 (406)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~ 259 (406)
++++|.+....+..+..+++|+.|+++++ .+... ....+..+++|+.|++++| .+++. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 77777776666666667777777777777 45442 3344566777777777777 77654 344556677 77777777
Q ss_pred CC--CCCh-HHHHHHhcCCCCCEEEccCCC-CChhHHHHhhcCCCCCEEEccCC-CCChHHHHhhhcCCCCCEEeccCCC
Q 015457 260 AR--QITD-TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNC 334 (406)
Q Consensus 260 ~~--~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 334 (406)
+| .++. .....+..+++|++|++++|. +++..+..+..+++|++|++++| .+.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 77 4553 223445567777777777777 55555556677777777777777 454444445666777777777777
Q ss_pred CCChhHHHHHHcCCCccEEEeeCCccChhHHHhc
Q 015457 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 368 (406)
Q Consensus 335 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 368 (406)
+.......+. .+++.|++++|.+++..+..+
T Consensus 283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 283 -VPDGTLQLLK--EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp -SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred -cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence 4444333433 223444567777766554443
No 66
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=3e-22 Score=179.22 Aligned_cols=240 Identities=20% Similarity=0.217 Sum_probs=139.4
Q ss_pred HHHHhcCCCCcEEEcCCccCChhhhhh----ccCCCCccEEEecCCccc---hhHHhh-------hcCCCCCCeEEccCC
Q 015457 124 LDSLSALGSLFYLNLNRCQLSDDGCEK----FSKIGSLKVLNLGFNEIT---DECLVH-------LKGLTNLESLNLDSC 189 (406)
Q Consensus 124 ~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~---~~~~~~-------~~~~~~L~~L~l~~~ 189 (406)
+..+..+++|++|++++|.+....+.. +..+++|+.|+++++.+. +..|.. +..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 445667788888888888877654433 556788888888775332 222322 356777777777777
Q ss_pred CCCh----hhhHhhhCCCCCCEEEcCCCcCCchhHHhhcC----C---------CCCcEEeccCCCCChhHH----HHhh
Q 015457 190 GIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG----L---------TNLESINLSFTGISDGSL----RKLA 248 (406)
Q Consensus 190 ~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~----~---------~~L~~L~l~~~~~~~~~~----~~l~ 248 (406)
.+.. ..+..+..+++|+.|++++|.+.......+.. + ++|+.|++++|.+++... ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 7665 23445566777777777777765433333322 2 666677776666653222 2344
Q ss_pred CCCCCcEEECCCCCCChHH----HH-HHhcCCCCCEEEccCCCCC----hhHHHHhhcCCCCCEEEccCCCCChHHHH--
Q 015457 249 GLSSLKSLNLDARQITDTG----LA-ALTSLTGLTHLDLFGARIT----DSGAAYLRNFKNLRSLEICGGGLTDAGVK-- 317 (406)
Q Consensus 249 ~~~~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-- 317 (406)
.+++|++|++++|.+.... .. .+..+++|+.|++++|.++ ...+..+..+++|++|++++|.+++.+..
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 5666666666666666432 11 3445666666666666664 22334455566666666666666655322
Q ss_pred --hhhc--CCCCCEEeccCCCCCCh----hHHHHH-HcCCCccEEEeeCCccChhH
Q 015457 318 --HIKD--LSSLTLLNLSQNCNLTD----KTLELI-SGLTGLVSLNVSNSRITSAG 364 (406)
Q Consensus 318 --~~~~--~~~L~~L~l~~~~~~~~----~~~~~l-~~~~~L~~L~l~~~~~~~~~ 364 (406)
.+.. +++|+.|++++| .+.. ..+..+ .++++|+.|++++|++++..
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 2211 566666666666 4554 233333 34566666666666655433
No 67
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=6.6e-23 Score=180.17 Aligned_cols=251 Identities=20% Similarity=0.201 Sum_probs=197.8
Q ss_pred CCCcEEEcCCccCChhhhhhccCC--CCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChh-hhHhhhCCCCCCE
Q 015457 131 GSLFYLNLNRCQLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE-GLVNLTGLCNLKC 207 (406)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~ 207 (406)
..++.++++++.+.. ..+..+ ++++.++++++.+.+..+. +..+++|++|++++|.+... .+..+..+++|+.
T Consensus 47 ~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 458899999887763 334444 7899999999988755444 45789999999999987655 5667788999999
Q ss_pred EEcCCCcCCchhHHhhcCCCCCcEEeccCC-CCChh-HHHHhhCCCCCcEEECCCC-CCChHH-HHHHhcCC-CCCEEEc
Q 015457 208 LELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDG-SLRKLAGLSSLKSLNLDAR-QITDTG-LAALTSLT-GLTHLDL 282 (406)
Q Consensus 208 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~~-~~~~~~~~-~L~~L~l 282 (406)
|+++++.+....+..++.+++|+.|++++| .+++. .+..+..+++|++|++++| .+++.. ...+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999988777788888999999999998 77764 4555778999999999999 888753 45677888 9999999
Q ss_pred cCC--CCC-hhHHHHhhcCCCCCEEEccCCC-CChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCC
Q 015457 283 FGA--RIT-DSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 358 (406)
Q Consensus 283 ~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 358 (406)
++| .++ ...+..+..+++|++|++++|. +++..+..+..+++|+.|++++|..+.......+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999 566 3445667789999999999998 777777788889999999999996666655566788999999999999
Q ss_pred ccChhHHHhcCCCCCccEEEccCCCCChhh
Q 015457 359 RITSAGLRHLKPLKNLRSLTLESCKVTAND 388 (406)
Q Consensus 359 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~ 388 (406)
+++.....+.. .++.|++++|.++...
T Consensus 283 -i~~~~~~~l~~--~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 283 -VPDGTLQLLKE--ALPHLQINCSHFTTIA 309 (336)
T ss_dssp -SCTTCHHHHHH--HSTTSEESCCCSCCTT
T ss_pred -cCHHHHHHHHh--hCcceEEecccCcccc
Confidence 76655555432 2444557888877643
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=7e-24 Score=184.79 Aligned_cols=205 Identities=17% Similarity=0.134 Sum_probs=115.4
Q ss_pred ccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhc-------
Q 015457 79 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF------- 151 (406)
Q Consensus 79 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------- 151 (406)
+..+++|++|++++|.+. ..+..+.++++|++|++++|.+.. .|..+..+++|++|++++|.+....+..+
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC-CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc-CcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 334444555555444444 223334444555555555554442 24444455555555555544333333322
Q ss_pred --cCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCC
Q 015457 152 --SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229 (406)
Q Consensus 152 --~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L 229 (406)
..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+... +..+..+++|+.|++++|.+....+..++.+++|
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 23566666666666665 4455566666666666666665533 2345566666666666666555555556666677
Q ss_pred cEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCC
Q 015457 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287 (406)
Q Consensus 230 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 287 (406)
+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.+.+..+.+
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 7777766665555555566667777777777666665556666677777776665443
No 69
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=3.6e-22 Score=178.66 Aligned_cols=257 Identities=18% Similarity=0.188 Sum_probs=180.0
Q ss_pred HhhhcCCCCCEEEecCCCCChhhHHH----HhcCCCCcEEEcCCccCC---hhhhh-------hccCCCCccEEEecCCc
Q 015457 101 AYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDGCE-------KFSKIGSLKVLNLGFNE 166 (406)
Q Consensus 101 ~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~---~~~~~-------~~~~l~~L~~L~l~~~~ 166 (406)
..+..+++|++|++++|.+....+.. +..+++|++|++++|.+. +..+. .+..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 45677888999999988887765444 456888999988886433 22222 23677889999999888
Q ss_pred cch----hHHhhhcCCCCCCeEEccCCCCChhhhHhhhC----C---------CCCCEEEcCCCcCCchhH----HhhcC
Q 015457 167 ITD----ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG----L---------CNLKCLELSDTQVGSSGL----RHLSG 225 (406)
Q Consensus 167 ~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~---------~~L~~l~l~~~~~~~~~~----~~l~~ 225 (406)
+.. .++..+..+++|++|++++|.++...+..+.. + ++|+.|++++|.+..... ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 876 46677788888999999888876544433333 3 788999998888864332 34567
Q ss_pred CCCCcEEeccCCCCChhH----HH-HhhCCCCCcEEECCCCCCCh----HHHHHHhcCCCCCEEEccCCCCChhH----H
Q 015457 226 LTNLESINLSFTGISDGS----LR-KLAGLSSLKSLNLDARQITD----TGLAALTSLTGLTHLDLFGARITDSG----A 292 (406)
Q Consensus 226 ~~~L~~L~l~~~~~~~~~----~~-~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~----~ 292 (406)
+++|+.|++++|.++... .. .+..+++|+.|++++|.++. ..+..+..+++|++|++++|.++..+ +
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 788999999888887532 22 56678889999999888863 23455677888999999998888753 3
Q ss_pred HHhhc--CCCCCEEEccCCCCChH----HHHhh-hcCCCCCEEeccCCCCCChhHH--HHH-HcCCCccEEEeeCC
Q 015457 293 AYLRN--FKNLRSLEICGGGLTDA----GVKHI-KDLSSLTLLNLSQNCNLTDKTL--ELI-SGLTGLVSLNVSNS 358 (406)
Q Consensus 293 ~~~~~--~~~L~~L~l~~~~~~~~----~~~~~-~~~~~L~~L~l~~~~~~~~~~~--~~l-~~~~~L~~L~l~~~ 358 (406)
..+.. +++|++|++++|.+++. .+..+ ..+++|+.|++++| .+....+ ..+ ..++.++.+++...
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 34433 78899999999888883 34444 55789999999988 5554442 332 23455555555443
No 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.2e-24 Score=187.99 Aligned_cols=231 Identities=16% Similarity=0.122 Sum_probs=131.8
Q ss_pred CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457 83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162 (406)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (406)
+++++|+++++.+.. .+..+.++++|++|++++|.+. ..|..+..+++|++|++++|.+. ..+..+..+++|+.|++
T Consensus 81 ~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 445555555554442 2233444555555555555544 23444445555555555555444 23344444555555555
Q ss_pred cCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChh
Q 015457 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242 (406)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 242 (406)
++|...+..|..+.. .. ....+..+++|+.|++++|.+.. .+..++.+++|+.|++++|.++..
T Consensus 158 ~~n~~~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 158 RACPELTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp EEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCC
T ss_pred CCCCCccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcC
Confidence 544333333322221 00 00012235666666666666552 234456666677777766666542
Q ss_pred HHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcC
Q 015457 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322 (406)
Q Consensus 243 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 322 (406)
+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+
T Consensus 222 -~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 222 -GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp -CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred -chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 2345666777777777766665545556677777788887777766666667777888888888877777777777888
Q ss_pred CCCCEEeccCC
Q 015457 323 SSLTLLNLSQN 333 (406)
Q Consensus 323 ~~L~~L~l~~~ 333 (406)
++|+.+.+..+
T Consensus 301 ~~L~~l~l~~~ 311 (328)
T 4fcg_A 301 PANCIILVPPH 311 (328)
T ss_dssp CTTCEEECCGG
T ss_pred cCceEEeCCHH
Confidence 88888877765
No 71
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=5.7e-23 Score=182.01 Aligned_cols=223 Identities=22% Similarity=0.225 Sum_probs=124.6
Q ss_pred EEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhh----hhccCCC-CccEEEecCCccchhHHhhhcCC-----CC
Q 015457 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIG-SLKVLNLGFNEITDECLVHLKGL-----TN 180 (406)
Q Consensus 111 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~ 180 (406)
.++++.+.+.+..|..+...++|++|++++|.+....+ ..+..++ +|+.|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677778887766666666668888888888776555 5566666 78888888877765444444332 77
Q ss_pred CCeEEccCCCCChhhhHh----hhCC-CCCCEEEcCCCcCCchhHHhh----cC-CCCCcEEeccCCCCChhH----HHH
Q 015457 181 LESLNLDSCGIGDEGLVN----LTGL-CNLKCLELSDTQVGSSGLRHL----SG-LTNLESINLSFTGISDGS----LRK 246 (406)
Q Consensus 181 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~l~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~----~~~ 246 (406)
|++|++++|.++...+.. +... ++|+.|++++|.+.......+ .. +++|+.|++++|.+++.. ...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 777777777765444432 2333 567777777766655444332 22 246666666666655322 222
Q ss_pred hhCCC-CCcEEECCCCCCChHHHH----HHhcC-CCCCEEEccCCCCChh----HHHHhhc-CCCCCEEEccCCCCChHH
Q 015457 247 LAGLS-SLKSLNLDARQITDTGLA----ALTSL-TGLTHLDLFGARITDS----GAAYLRN-FKNLRSLEICGGGLTDAG 315 (406)
Q Consensus 247 l~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~ 315 (406)
+...+ +|++|++++|.++..... .+..+ ++|+.|++++|.++.. .+..+.. .++|++|++++|.+.+.+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33333 566666666655543332 22233 3566666666555542 1222222 335555555555554433
Q ss_pred HHh----hhcCCCCCEEeccCC
Q 015457 316 VKH----IKDLSSLTLLNLSQN 333 (406)
Q Consensus 316 ~~~----~~~~~~L~~L~l~~~ 333 (406)
... +..+++|+.|++++|
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHhcCCCccEEEeccC
Confidence 321 233455555555555
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=6.5e-25 Score=190.36 Aligned_cols=205 Identities=21% Similarity=0.193 Sum_probs=94.2
Q ss_pred CCCccEEEecCCccchhHHhhh--cCCCCCCeEEccCCCCChhhhHhhhCC-----CCCCEEEcCCCcCCchhHHhhcCC
Q 015457 154 IGSLKVLNLGFNEITDECLVHL--KGLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGL 226 (406)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~l~~~ 226 (406)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+... +..+..+ ++|++|++++|.+....+..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3444444444444443333332 4444555555555444333 2222222 445555555444444433444444
Q ss_pred CCCcEEeccCCCCChh--HHHHh--hCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCC
Q 015457 227 TNLESINLSFTGISDG--SLRKL--AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302 (406)
Q Consensus 227 ~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 302 (406)
++|+.|++++|.+... .+..+ ..+++|++|++++|.++..+ ......+..+++|+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS---------------------GVCSALAAARVQLQ 231 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH---------------------HHHHHHHHTTCCCS
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH---------------------HHHHHHHhcCCCCC
Confidence 5555555555544332 11122 33444444444444444211 11112223344444
Q ss_pred EEEccCCCCChHHH-HhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccC
Q 015457 303 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381 (406)
Q Consensus 303 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~ 381 (406)
+|++++|.+.+..+ ..+..+++|++|++++| .+.. .+..+. ++|+.|++++|++++. + .+..+++|++|++++
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p-~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQ-VPKGLP--AKLSVLDLSYNRLDRN-P-SPDELPQVGNLSLKG 305 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSS-CCSSCC--SEEEEEECCSSCCCSC-C-CTTTSCEEEEEECTT
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccCh-hhhhcc--CCceEEECCCCCCCCC-h-hHhhCCCCCEEeccC
Confidence 44444444444321 22233455666666655 3442 222222 5677777777776664 2 256677777777777
Q ss_pred CCCCh
Q 015457 382 CKVTA 386 (406)
Q Consensus 382 ~~~~~ 386 (406)
|+++.
T Consensus 306 N~l~~ 310 (312)
T 1wwl_A 306 NPFLD 310 (312)
T ss_dssp CTTTC
T ss_pred CCCCC
Confidence 77664
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=1.4e-24 Score=188.22 Aligned_cols=203 Identities=21% Similarity=0.232 Sum_probs=97.8
Q ss_pred cCCCCCEEEecCCCCChhhHHHH--hcCCCCcEEEcCCccCChhhhhhccCC-----CCccEEEecCCccchhHHhhhcC
Q 015457 105 GLQKLTLLNLEGCPVTAACLDSL--SALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHLKG 177 (406)
Q Consensus 105 ~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~ 177 (406)
++++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+. +..+..+ ++|++|++++|.+.+..+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 34445555555544443333332 3444555555555444433 3333322 44555555555544443344445
Q ss_pred CCCCCeEEccCCCCChh--hhHhh--hCCCCCCEEEcCCCcCCc---hhHHhhcCCCCCcEEeccCCCCChhHH-HHhhC
Q 015457 178 LTNLESLNLDSCGIGDE--GLVNL--TGLCNLKCLELSDTQVGS---SGLRHLSGLTNLESINLSFTGISDGSL-RKLAG 249 (406)
Q Consensus 178 ~~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~l~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~ 249 (406)
+++|++|++++|.+... .+..+ ..+++|+.|++++|.+.. .....+..+++|+.|++++|.++...+ ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 55555555555543322 11122 444555555555555442 112223345555555555555544321 22233
Q ss_pred CCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCCh
Q 015457 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313 (406)
Q Consensus 250 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 313 (406)
+++|+.|++++|.++..+ ..+. ++|+.|++++|.+++. +. +..+++|++|++++|.+++
T Consensus 252 l~~L~~L~Ls~N~l~~ip-~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVP-KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCSSCC-SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccChhh-hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 456666666666655322 1111 5666677776666654 22 5566777777777776654
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=4.7e-22 Score=186.15 Aligned_cols=268 Identities=21% Similarity=0.111 Sum_probs=193.4
Q ss_pred CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEE
Q 015457 34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113 (406)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 113 (406)
.++++|+++++... ..+..+. ++|++|++++|. ++.... .+++|++|++++|.++..+. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCC-CSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCC-CCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 46899999987743 4444443 789999999864 443222 57899999999998875433 678899999
Q ss_pred ecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCCh
Q 015457 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193 (406)
Q Consensus 114 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 193 (406)
+++|.+..... .+++|++|++++|.+.... . .+++|++|++++|.+.. +|. .+++|+.|++++|.++.
T Consensus 108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCCCC----CCCCcCEEECCCCCCCcCC-C---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 99998877532 5788999999998877532 2 24789999999888774 232 35688889998888765
Q ss_pred hhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhc
Q 015457 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273 (406)
Q Consensus 194 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 273 (406)
.. ..+++|+.|++++|.+.... ...++|+.|++++|.++... ..+++|+.|++++|.++..+ ..
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~ 239 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL 239 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence 43 45678888888888876532 23478888888888776532 13477888888888877643 45
Q ss_pred CCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC
Q 015457 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347 (406)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 347 (406)
+++|+.|++++|.++.... .+++|+.|++++|.++.. +..+..+++|+.|++++| .+....+..+..+
T Consensus 240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~L 307 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQALREI 307 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC-CCCHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC-CCCCcCHHHHHhc
Confidence 6788888888888775432 567888888888887754 556777888888888888 6776666665543
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.6e-22 Score=177.73 Aligned_cols=252 Identities=15% Similarity=0.189 Sum_probs=184.0
Q ss_pred EEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhH----HHHhcCC-CCcEEEcCCccCChhhhhhccCC-----CC
Q 015457 87 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL----DSLSALG-SLFYLNLNRCQLSDDGCEKFSKI-----GS 156 (406)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 156 (406)
++.++.+.+++..+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45678888887777766666779999999998887666 6677788 89999999998887666555553 89
Q ss_pred ccEEEecCCccchhHHh----hhcCC-CCCCeEEccCCCCChhhhHhhh----C-CCCCCEEEcCCCcCCchhH----Hh
Q 015457 157 LKVLNLGFNEITDECLV----HLKGL-TNLESLNLDSCGIGDEGLVNLT----G-LCNLKCLELSDTQVGSSGL----RH 222 (406)
Q Consensus 157 L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~l~l~~~~~~~~~~----~~ 222 (406)
|+.|++++|.+....+. .+... ++|+.|++++|.++......+. . .++|++|++++|.+..... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999988754444 34444 7999999999988765554433 3 3589999999998875433 33
Q ss_pred hcCCC-CCcEEeccCCCCChhHHH----HhhCC-CCCcEEECCCCCCChHH----HHHHhc-CCCCCEEEccCCCCChhH
Q 015457 223 LSGLT-NLESINLSFTGISDGSLR----KLAGL-SSLKSLNLDARQITDTG----LAALTS-LTGLTHLDLFGARITDSG 291 (406)
Q Consensus 223 l~~~~-~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~~~ 291 (406)
+...+ +|+.|++++|.+++.... .+..+ ++|++|++++|.+.... ...+.. .++|++|++++|.+++.+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 899999999988765543 34455 59999999999888732 233444 458999999999988754
Q ss_pred H----HHhhcCCCCCEEEccCCC---CChHHHH----hhhcCCCCCEEeccCCCCCChh
Q 015457 292 A----AYLRNFKNLRSLEICGGG---LTDAGVK----HIKDLSSLTLLNLSQNCNLTDK 339 (406)
Q Consensus 292 ~----~~~~~~~~L~~L~l~~~~---~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~ 339 (406)
. ..+..+++|++|++++|. ++..... .+..+++|+.|++++| .+...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCc
Confidence 4 334667899999999987 4433222 3445677888888888 55554
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=6.3e-24 Score=194.97 Aligned_cols=236 Identities=19% Similarity=0.168 Sum_probs=115.4
Q ss_pred CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457 83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162 (406)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (406)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+....
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--------------- 96 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--------------- 96 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE---------------
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC---------------
Confidence 355555555555554444445555555555555555444322 444555555555554443211
Q ss_pred cCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChh
Q 015457 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242 (406)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 242 (406)
..++|+.|++++|.+....+. .+++|+.|++++|.+....+..++.+++|+.|++++|.++..
T Consensus 97 --------------~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 97 --------------VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp --------------ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred --------------CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence 124444444444444332221 234455555555554444333444445555555555555443
Q ss_pred HHHHhh-CCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhc
Q 015457 243 SLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321 (406)
Q Consensus 243 ~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 321 (406)
.+..+. .+++|+.|++++|.+++. .....+++|+.|++++|.++..++. +..+++|+.|++++|.+.+. +..+..
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~ 235 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRF 235 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCC
T ss_pred ChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhcc
Confidence 333333 345555555555555543 1122355566666666665543332 45556666666666666543 334555
Q ss_pred CCCCCEEeccCCCCCChhHHHHHHcCCCccEEEee
Q 015457 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356 (406)
Q Consensus 322 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 356 (406)
+++|+.|++++|+......+..+..++.|+.+++.
T Consensus 236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 56666666666632223444555555555555553
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=2.1e-21 Score=181.72 Aligned_cols=244 Identities=16% Similarity=0.074 Sum_probs=109.0
Q ss_pred CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEE
Q 015457 34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 113 (406)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 113 (406)
++|++|++++|... ..+. .+++|++|++++|. ++.... .+++|++|++++|.+...+. .+++|+.|+
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSNPLTHLPA----LPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSCCCCCCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCCcCCCCCC----CCCCcCEEE
Confidence 45555555554422 1111 34455555555533 221111 34555555555554443221 334555555
Q ss_pred ecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCCh
Q 015457 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193 (406)
Q Consensus 114 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 193 (406)
+++|.+... |. .+++|++|++++|.+.... . .+++|+.|++++|.+.. +| ..+++|+.|++++|.+..
T Consensus 128 L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 128 IFGNQLTSL-PV---LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp CCSSCCSCC-CC---CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred CCCCCCCcC-CC---CCCCCCEEECcCCcCCCcC-C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC
Confidence 555544442 11 2345555555555444311 1 12445555555555442 22 233455555555554432
Q ss_pred hhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhc
Q 015457 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 273 (406)
Q Consensus 194 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 273 (406)
... ..++|+.|++++|.+.... ..+++|+.|++++|.++... ..+++|+.|++++|.++..+. .
T Consensus 196 l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~ 259 (622)
T 3g06_A 196 LPT----LPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----L 259 (622)
T ss_dssp CCC----CCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----C
T ss_pred CCC----ccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----c
Confidence 111 1244555555555444321 12345555555555444321 234455555555555544321 3
Q ss_pred CCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhh
Q 015457 274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319 (406)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 319 (406)
+++|+.|++++|.++.. +..+..+++|+.|++++|.+.+..+..+
T Consensus 260 ~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 260 PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred cccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 44555555555555432 3334455555555555555555444433
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.3e-23 Score=192.96 Aligned_cols=237 Identities=16% Similarity=0.153 Sum_probs=185.1
Q ss_pred CCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcE
Q 015457 56 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135 (406)
Q Consensus 56 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 135 (406)
.+++|++|++++| .+....+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.... ..++|++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 4569999999995 4666667788999999999999999876554 889999999999999887642 3489999
Q ss_pred EEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhh-CCCCCCEEEcCCCc
Q 015457 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQ 214 (406)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~ 214 (406)
|++++|.+....+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999998875543 457899999999999887787888899999999999998876666665 68899999999998
Q ss_pred CCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCC-hhHHH
Q 015457 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAA 293 (406)
Q Consensus 215 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~ 293 (406)
+.... ....+++|+.|++++|.++...+ .+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.+. ...+.
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccc-hhhccCCCCCEEEcCCCCCcCcchHH
Confidence 87652 23457888888888888876433 3667788888888888877642 34566777888888888777 34455
Q ss_pred HhhcCCCCCEEEcc
Q 015457 294 YLRNFKNLRSLEIC 307 (406)
Q Consensus 294 ~~~~~~~L~~L~l~ 307 (406)
++..++.|+.+++.
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 56666666655553
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=8.9e-23 Score=173.95 Aligned_cols=208 Identities=24% Similarity=0.244 Sum_probs=104.4
Q ss_pred CCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEec
Q 015457 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234 (406)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 234 (406)
++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++++.+.......+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666666444445566666666666666665544445555666666666666655554445555566666666
Q ss_pred cCCCCChhHHHHhhCCCCCcEEECCCCCCChHH-HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCCh
Q 015457 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313 (406)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 313 (406)
++|.+.......+..+++|++|++++|.+.... +..+..+++|++|++++|.++...+..+..+++|+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----------- 176 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP----------- 176 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc-----------
Confidence 555554433333444555555555555544421 23344445555555555554443322232222232
Q ss_pred HHHHhhhcCCCCC-EEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCC
Q 015457 314 AGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385 (406)
Q Consensus 314 ~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~ 385 (406)
.+. .|++++| .+....+..+ ...+|+.|++++|.++......+..+++|+.+++++|++.
T Consensus 177 ----------~l~l~L~ls~n-~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 177 ----------LLNLSLDLSLN-PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ----------TCCEEEECCSS-CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ----------ccceeeecCCC-cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 111 4444444 3333222222 1224555555555555444444445555555555555544
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=1.1e-21 Score=167.14 Aligned_cols=133 Identities=21% Similarity=0.216 Sum_probs=59.6
Q ss_pred CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457 84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163 (406)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (406)
+|++|+++++.+.......+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444443333344444445555555444444433344444455555555444444333444444445555554
Q ss_pred CCccchhHHhhhcCCCCCCeEEccCCCCChh-hhHhhhCCCCCCEEEcCCCcCC
Q 015457 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDE-GLVNLTGLCNLKCLELSDTQVG 216 (406)
Q Consensus 164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~ 216 (406)
+|.+....+..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 4444433232344444455555544444331 1333444444444444444443
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.7e-20 Score=159.08 Aligned_cols=179 Identities=21% Similarity=0.184 Sum_probs=79.6
Q ss_pred ccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecC
Q 015457 85 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164 (406)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (406)
+++|+++++.+.......+.++++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence 34444444433333333333444444444444443333222233344444444444444433333344444444444444
Q ss_pred CccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHH
Q 015457 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244 (406)
Q Consensus 165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 244 (406)
|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++++.+.......+..+++|+.|++++|.++....
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 44443333334444444445444444443333334444555555555554444433344445555555555555544333
Q ss_pred HHhhCCCCCcEEECCCCCC
Q 015457 245 RKLAGLSSLKSLNLDARQI 263 (406)
Q Consensus 245 ~~l~~~~~L~~L~l~~~~~ 263 (406)
..+..+++|+.|++++|.+
T Consensus 199 ~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCB
T ss_pred HHhccccCCCEEEecCCCe
Confidence 3344555555666655543
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.1e-20 Score=160.36 Aligned_cols=180 Identities=22% Similarity=0.211 Sum_probs=85.8
Q ss_pred CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEcc
Q 015457 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187 (406)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 187 (406)
+++.|+++++.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 44555555554444433344445555555555554444333344444555555555554443333334444555555555
Q ss_pred CCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHH
Q 015457 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267 (406)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 267 (406)
+|.+....+..+..+++|+.|+++++.+.......+..+++|+.|++++|.++...+..+..+++|+.|++++|.++..+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 55444444444444555555555555444443333444455555555555444433333444455555555555444433
Q ss_pred HHHHhcCCCCCEEEccCCCC
Q 015457 268 LAALTSLTGLTHLDLFGARI 287 (406)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~ 287 (406)
...+..+++|+.|++++|.+
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCB
T ss_pred HHHhccccCCCEEEecCCCe
Confidence 33344445555555555443
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=2.2e-21 Score=164.66 Aligned_cols=158 Identities=25% Similarity=0.221 Sum_probs=80.4
Q ss_pred ccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCcc
Q 015457 79 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158 (406)
Q Consensus 79 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (406)
...+++|+.|.+.++.+... ..+..+++|++|++++|.+... ..+..+++|++|++++|.+....+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34556666666666655532 2355666666666666665542 2455566666666666655554444455555555
Q ss_pred EEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCC
Q 015457 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238 (406)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 238 (406)
+|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......++.+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 55555555554434444455555555555555443333333444444444444444433333333333444444444433
Q ss_pred CC
Q 015457 239 IS 240 (406)
Q Consensus 239 ~~ 240 (406)
++
T Consensus 193 l~ 194 (272)
T 3rfs_A 193 LK 194 (272)
T ss_dssp CS
T ss_pred CC
Confidence 33
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=5.2e-21 Score=162.38 Aligned_cols=178 Identities=21% Similarity=0.197 Sum_probs=80.5
Q ss_pred cCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCE
Q 015457 32 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 111 (406)
Q Consensus 32 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 111 (406)
.+++|+.|+++++... ....+..+++|++|++++|. +.. ...+..+++|++|++++|.+....+..+.++++|++
T Consensus 39 ~l~~L~~L~l~~~~i~--~~~~l~~l~~L~~L~l~~n~-l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK--SVQGIQYLPNVRYLALGGNK-LHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCC--CCTTGGGCTTCCEEECTTSC-CCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCcc--cccccccCCCCcEEECCCCC-CCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3445555555544321 12234445555555555433 221 123444455555555555444433333444455555
Q ss_pred EEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCC
Q 015457 112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191 (406)
Q Consensus 112 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 191 (406)
|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 55555544444333344445555555555544443333344444555555555444433333344444455555544444
Q ss_pred ChhhhHhhhCCCCCCEEEcCCCc
Q 015457 192 GDEGLVNLTGLCNLKCLELSDTQ 214 (406)
Q Consensus 192 ~~~~~~~~~~~~~L~~l~l~~~~ 214 (406)
....+..+..+++|+.+++++|.
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHHHHhCCcCCCEEEccCCC
Confidence 43333334444444444444443
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=3e-20 Score=160.42 Aligned_cols=194 Identities=28% Similarity=0.389 Sum_probs=155.6
Q ss_pred cCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcE
Q 015457 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231 (406)
Q Consensus 152 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 231 (406)
..+++|+.|+++++.+.. .+ .+..+++|+.|++++|.+....+ +..+++|+.|+++++.+... ..+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 346789999999988774 33 57788999999999998876544 77889999999999987764 35778899999
Q ss_pred EeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCC
Q 015457 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311 (406)
Q Consensus 232 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 311 (406)
|++++|.++... .+..+++|++|++++|.+..... +..+++|+.|++++|.++...+ +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 999999887743 37788999999999998887543 7788899999999998887544 77888999999999988
Q ss_pred ChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccCh
Q 015457 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362 (406)
Q Consensus 312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 362 (406)
.+..+ +..+++|+.|++++| .+.... .+..+++|+.|++++|+++.
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNN-QISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTS-CCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCC-ccCccc--cccCCCCCCEEEccCCeeec
Confidence 87643 778889999999988 666554 37788899999999988765
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=6.2e-20 Score=158.47 Aligned_cols=191 Identities=28% Similarity=0.386 Sum_probs=160.0
Q ss_pred HhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCC
Q 015457 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206 (406)
Q Consensus 127 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 206 (406)
...+++|++|++.++.+... ..+..+++|+.|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 34578899999999988753 357788999999999998875444 78899999999999988654 3577899999
Q ss_pred EEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCC
Q 015457 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286 (406)
Q Consensus 207 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 286 (406)
.|+++++.+.... .+..+++|+.|++++|.++.... +..+++|+.|++++|.+..... +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 9999999987653 37889999999999998887544 7788999999999999887543 7889999999999999
Q ss_pred CChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCC
Q 015457 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333 (406)
Q Consensus 287 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 333 (406)
++...+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC
Confidence 987543 788999999999999998864 3788999999999998
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=1.7e-20 Score=156.12 Aligned_cols=198 Identities=17% Similarity=0.134 Sum_probs=138.8
Q ss_pred CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEecc-CccChhHHHhhhcCCCCCEE
Q 015457 34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLL 112 (406)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L 112 (406)
++|++|+++++.........+..+++|++|++++|..++......+..+++|++|++++ +.+....+..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 36778888777644433445777788888888876545555555677778888888876 77776666667777888888
Q ss_pred EecCCCCChhhHHHHhcCCCCc---EEEcCCc-cCChhhhhhccCCCCcc-EEEecCCccchhHHhhhcCCCCCCeEEcc
Q 015457 113 NLEGCPVTAACLDSLSALGSLF---YLNLNRC-QLSDDGCEKFSKIGSLK-VLNLGFNEITDECLVHLKGLTNLESLNLD 187 (406)
Q Consensus 113 ~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 187 (406)
++++|.+... |. +..+++|+ ++++++| .+....+..|..+++|+ .+++++|.+....+..+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 8888777663 33 66677776 8888887 77766666677778888 8888888776333333433 678888888
Q ss_pred CCC-CChhhhHhhhCC-CCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCC
Q 015457 188 SCG-IGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237 (406)
Q Consensus 188 ~~~-~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 237 (406)
+|. +....+..+..+ ++|+.++++++.+...... .+++|+.|++.++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 884 766656667777 7888888888877654332 4677888877654
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=5.6e-21 Score=165.48 Aligned_cols=227 Identities=18% Similarity=0.105 Sum_probs=122.0
Q ss_pred CCCcEEEcCCccCChhhhhh---ccCCCCccEEEecCCccchhHHhhh--cCCCCCCeEEccCCCCChhhh----HhhhC
Q 015457 131 GSLFYLNLNRCQLSDDGCEK---FSKIGSLKVLNLGFNEITDECLVHL--KGLTNLESLNLDSCGIGDEGL----VNLTG 201 (406)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~ 201 (406)
..++.+.+.++.+....... +..+++|+.|++++|.+.+..|..+ ..+++|+.|++++|.+....+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45666777666554322211 1123456777777666665555544 556666666666666543211 22234
Q ss_pred CCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHH----HHHhcCCCC
Q 015457 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGL 277 (406)
Q Consensus 202 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L 277 (406)
+++|+.|++++|.+....+..++. +++|++|++++|.+.+... ..+..+++|
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L 199 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRA------------------------FPALTSLDLSDNPGLGERGLMAALCPHKFPAI 199 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCC------------------------CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC
T ss_pred ccCCCEEEeeCCCcchhhHHHhcc------------------------CCCCCEEECCCCCCccchhhhHHHhhhcCCCC
Confidence 455555555555544443344444 4445555555544433211 011345556
Q ss_pred CEEEccCCCCChhHHH---HhhcCCCCCEEEccCCCCChHHHHhhhcC---CCCCEEeccCCCCCChhHHHHHHcCCCcc
Q 015457 278 THLDLFGARITDSGAA---YLRNFKNLRSLEICGGGLTDAGVKHIKDL---SSLTLLNLSQNCNLTDKTLELISGLTGLV 351 (406)
Q Consensus 278 ~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 351 (406)
++|++++|.++..... .+..+++|++|++++|.+.+..+..+..+ ++|++|++++| .+... +..+ +++|+
T Consensus 200 ~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~--~~~L~ 275 (310)
T 4glp_A 200 QNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQV-PKGL--PAKLR 275 (310)
T ss_dssp CSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSC-CSCC--CSCCS
T ss_pred CEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCch-hhhh--cCCCC
Confidence 6666666655532211 23455666666666666655544333333 56777777776 45532 2222 26778
Q ss_pred EEEeeCCccChhHHHhcCCCCCccEEEccCCCCChh
Q 015457 352 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 387 (406)
Q Consensus 352 ~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~ 387 (406)
.|++++|++++.. .+..+++|+.|++++|+++.+
T Consensus 276 ~L~Ls~N~l~~~~--~~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 276 VLDLSSNRLNRAP--QPDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CEECCSCCCCSCC--CTTSCCCCSCEECSSTTTSCC
T ss_pred EEECCCCcCCCCc--hhhhCCCccEEECcCCCCCCC
Confidence 8888888777642 246678888888888887653
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=7e-20 Score=156.54 Aligned_cols=156 Identities=24% Similarity=0.197 Sum_probs=73.4
Q ss_pred ccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCC
Q 015457 54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133 (406)
Q Consensus 54 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 133 (406)
+..++++++++++++. ++..+.. + .+++++|++++|.+....+..+..+++|+.|++++|.+....+ ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCC-CCcCCCC-C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 4455666666666532 3322211 1 2456666666666555444555556666666666655554322 1345555
Q ss_pred cEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCC
Q 015457 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 213 (406)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 213 (406)
++|++++|.+.. .+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 555555555442 2233344444555555544444333333444444444444444443333333333444444444444
Q ss_pred cCC
Q 015457 214 QVG 216 (406)
Q Consensus 214 ~~~ 216 (406)
.+.
T Consensus 159 ~l~ 161 (290)
T 1p9a_G 159 NLT 161 (290)
T ss_dssp CCS
T ss_pred cCC
Confidence 433
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=1.8e-19 Score=154.00 Aligned_cols=202 Identities=20% Similarity=0.184 Sum_probs=105.1
Q ss_pred cCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccE
Q 015457 80 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 159 (406)
Q Consensus 80 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (406)
.+++++++++++++.+...+. .+ .+.++.|++++|.+....+..+..+++|++|++++|.+..... ...+++|+.
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 345555555555555443221 11 1345555555555555545555555556666655555543322 144555556
Q ss_pred EEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCC
Q 015457 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239 (406)
Q Consensus 160 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 239 (406)
|++++|.+. .+|..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 666555554 3344445555555565555555544444455555556666555555544444445555555565555555
Q ss_pred ChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCC
Q 015457 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288 (406)
Q Consensus 240 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 288 (406)
+......+..+++|+.|++++|.++..+ ..+..+++|+.+++++|.+.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip-~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIP-KGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccC-hhhcccccCCeEEeCCCCcc
Confidence 5444334445555566666555555432 22233445666666655544
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=3.7e-20 Score=160.32 Aligned_cols=152 Identities=19% Similarity=0.146 Sum_probs=75.6
Q ss_pred CCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhH----HhhcCCCCCcEEeccCCCCChhHH--H-HhhC
Q 015457 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSL--R-KLAG 249 (406)
Q Consensus 177 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~--~-~l~~ 249 (406)
.+++|++|++++|.+....+..+..+++|++|++++|.+..... ..++.+++|+.|++++|.++.... . .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 34444444444444433333344444445555554444322110 111344555555555555543211 1 2344
Q ss_pred CCCCcEEECCCCCCChHHHHHHhcC---CCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCC
Q 015457 250 LSSLKSLNLDARQITDTGLAALTSL---TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326 (406)
Q Consensus 250 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 326 (406)
+++|++|++++|.+....+..+..+ ++|++|++++|.++.. +..+ .++|++|++++|.+++. + .+..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N~l~~~-~-~~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSNRLNRA-P-QPDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSCCCCSC-C-CTTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh--cCCCCEEECCCCcCCCC-c-hhhhCCCcc
Confidence 5666666666666555422223333 4666666666666632 2222 25677777777766653 1 245567777
Q ss_pred EEeccCC
Q 015457 327 LLNLSQN 333 (406)
Q Consensus 327 ~L~l~~~ 333 (406)
.|++++|
T Consensus 298 ~L~L~~N 304 (310)
T 4glp_A 298 NLTLDGN 304 (310)
T ss_dssp CEECSST
T ss_pred EEECcCC
Confidence 7777777
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=1.3e-19 Score=150.80 Aligned_cols=197 Identities=19% Similarity=0.210 Sum_probs=155.9
Q ss_pred CCccEEeecCCCCcCcCccccccCCCCccEEEeccCc-cChhHHHhhhcCCCCCEEEecC-CCCChhhHHHHhcCCCCcE
Q 015457 58 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFY 135 (406)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~ 135 (406)
++|++|+++++. ++......+..+++|++|++++|. +.......+.++++|++|++++ +.+....+..+..+++|++
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 478999998854 555556677889999999999886 7766666788899999999998 8888776677888999999
Q ss_pred EEcCCccCChhhhhhccCCCCcc---EEEecCC-ccchhHHhhhcCCCCCC-eEEccCCCCChhhhHhhhCCCCCCEEEc
Q 015457 136 LNLNRCQLSDDGCEKFSKIGSLK---VLNLGFN-EITDECLVHLKGLTNLE-SLNLDSCGIGDEGLVNLTGLCNLKCLEL 210 (406)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~l~l 210 (406)
|++++|.+.. .+. +..+++|+ .|++++| .+....+..+..+++|+ .+++++|.+.......+.. ++|+.+++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 9999988876 333 77777777 9999998 78766666688889999 9999999887555444444 78999999
Q ss_pred CCCc-CCchhHHhhcCC-CCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCC
Q 015457 211 SDTQ-VGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 261 (406)
Q Consensus 211 ~~~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 261 (406)
++|. +.......+..+ ++|+.|++++|.++..... .+++|+.|.+.++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 9994 777666777888 8999999999888764322 5788899988775
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=3.3e-18 Score=143.32 Aligned_cols=155 Identities=22% Similarity=0.250 Sum_probs=66.0
Q ss_pred CccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEc
Q 015457 59 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138 (406)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 138 (406)
+++.|+++++. +.......+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++
T Consensus 36 ~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 44555554422 23333333444444555555444444433333444444444444444444433333444444444444
Q ss_pred CCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCc
Q 015457 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214 (406)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 214 (406)
++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 4444443333333444444444444444443323333444444444444444433333333333444444444333
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=3.1e-18 Score=143.45 Aligned_cols=156 Identities=25% Similarity=0.252 Sum_probs=86.1
Q ss_pred CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457 83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162 (406)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (406)
+++++|+++++.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 46667777766666555555666666666666666666655555566666666666666665544455555566666666
Q ss_pred cCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCC
Q 015457 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238 (406)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 238 (406)
++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 6665554333444555555555555555544433344444555555555554443333333444444444444443
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1e-17 Score=143.32 Aligned_cols=172 Identities=26% Similarity=0.317 Sum_probs=130.9
Q ss_pred cCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcE
Q 015457 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255 (406)
Q Consensus 176 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 255 (406)
..+++|+.|+++++.+... ..+..+++|+.|+++++.+..... +..+++|+.|++++|.++.. ..+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3567888888888877544 236678888888888888776544 77888888888888887763 23777888888
Q ss_pred EECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCC
Q 015457 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335 (406)
Q Consensus 256 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (406)
|++++|.+... ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++| .
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~ 189 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-H 189 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-c
Confidence 88888888774 4567788888888888888765 456778888888888888877644 777888888888888 5
Q ss_pred CChhHHHHHHcCCCccEEEeeCCccCh
Q 015457 336 LTDKTLELISGLTGLVSLNVSNSRITS 362 (406)
Q Consensus 336 ~~~~~~~~l~~~~~L~~L~l~~~~~~~ 362 (406)
+.... .+..+++|+.|++++|++..
T Consensus 190 i~~l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDLR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCCh--hhccCCCCCEEECcCCcccC
Confidence 66542 36778888888888887765
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=4.7e-17 Score=139.13 Aligned_cols=168 Identities=29% Similarity=0.373 Sum_probs=131.0
Q ss_pred cCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcE
Q 015457 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231 (406)
Q Consensus 152 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 231 (406)
..+++|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3567788888888877643 246778888888888888766544 77888888888888887664 34778888888
Q ss_pred EeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCC
Q 015457 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311 (406)
Q Consensus 232 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 311 (406)
|++++|.++.. ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.++...+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 88888887764 3567788888888888888875 567788888888888888877544 77888888888888888
Q ss_pred ChHHHHhhhcCCCCCEEeccCC
Q 015457 312 TDAGVKHIKDLSSLTLLNLSQN 333 (406)
Q Consensus 312 ~~~~~~~~~~~~~L~~L~l~~~ 333 (406)
++. ..+..+++|+.|++++|
T Consensus 191 ~~l--~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 191 SDL--RALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CBC--GGGTTCTTCSEEEEEEE
T ss_pred CCC--hhhccCCCCCEEECcCC
Confidence 775 24777888888888888
No 97
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=3.2e-18 Score=149.40 Aligned_cols=218 Identities=14% Similarity=0.115 Sum_probs=114.1
Q ss_pred CCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCc----CCchhHHhhcCCCCC
Q 015457 154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ----VGSSGLRHLSGLTNL 229 (406)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~~~~~~~~l~~~~~L 229 (406)
+++|+.+++.. .+......+|..+++|+.+.+.++.+......++..+.++..+...... ........+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 45555555544 3433334445555555555555554444444444444444444333211 011111223334444
Q ss_pred c-EEeccCCCCChhHHHHhh---CCCCCcEEECCCCCCChHHHHHH-hcCCCCCEEEccCCCCChhHHHHhhcCCCCCEE
Q 015457 230 E-SINLSFTGISDGSLRKLA---GLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304 (406)
Q Consensus 230 ~-~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 304 (406)
+ .+.+.... ......+. ...++..+.+.+. +.......+ ..+++|+.+++++|.++..+..+|..+++|+++
T Consensus 179 ~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCCC--cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 4 33332221 11111111 2345555555543 222222222 236677777777766666666667777777777
Q ss_pred EccCCCCChHHHHhhhcCCCCC-EEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEE
Q 015457 305 EICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 378 (406)
Q Consensus 305 ~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~ 378 (406)
++.++ +...+...|..|++|+ .+.+.+ .+.......+.+|++|+.+++.++.++.+...+|.++++|+.++
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 77665 5555556666777777 777766 35555556666777777777777777666666777777777665
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=8.2e-18 Score=135.33 Aligned_cols=151 Identities=21% Similarity=0.297 Sum_probs=81.1
Q ss_pred CCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEc
Q 015457 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306 (406)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 306 (406)
++|+.|+++++.+++.. .+..+++|++|++++|.+... ..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 34444444444444321 244445555555555544332 24445555666666666555544444555666666666
Q ss_pred cCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCC
Q 015457 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385 (406)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~ 385 (406)
++|.+++..+..+..+++|+.|++++|..+.... .+..+++|+.|++++|.+++.. .+..+++|+.|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 6666665555555666666666666662143332 3556666666666666666533 4556666777777766654
No 99
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.8e-17 Score=144.70 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=62.1
Q ss_pred CCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCC-EEEccCCCCChhHHHHhhcCCCCCEE
Q 015457 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT-HLDLFGARITDSGAAYLRNFKNLRSL 304 (406)
Q Consensus 226 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L 304 (406)
+++|+.++++++.++......|.++++|+++.+.++ ++..+..+|..+++|+ .+.+.+ .++.....+|..|++|+++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 455555555555555544455555666666666554 4444445566666666 666665 5555555566666777777
Q ss_pred EccCCCCChHHHHhhhcCCCCCEEe
Q 015457 305 EICGGGLTDAGVKHIKDLSSLTLLN 329 (406)
Q Consensus 305 ~l~~~~~~~~~~~~~~~~~~L~~L~ 329 (406)
++.++.+.......|..|++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 7766666666666666677777665
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=8.2e-17 Score=150.64 Aligned_cols=175 Identities=26% Similarity=0.318 Sum_probs=136.6
Q ss_pred cCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcE
Q 015457 176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255 (406)
Q Consensus 176 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 255 (406)
..+++|+.|++.++.+.... .+..+++|+.|++++|.+..... +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 45678888999888775542 46778899999999988876544 77888999999998888763 25777888999
Q ss_pred EECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCC
Q 015457 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335 (406)
Q Consensus 256 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (406)
|++++|.+... ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++| .
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~ 186 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-H 186 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC-C
Confidence 99988888874 4577888888888888888765 457788888888888888887644 777888888888888 5
Q ss_pred CChhHHHHHHcCCCccEEEeeCCccChhHH
Q 015457 336 LTDKTLELISGLTGLVSLNVSNSRITSAGL 365 (406)
Q Consensus 336 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 365 (406)
+... ..+..+++|+.|++++|++.....
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 6654 347778888888888888766443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=3.7e-16 Score=125.63 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=78.8
Q ss_pred CCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEE
Q 015457 81 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160 (406)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (406)
.+++|++|+++++.+.... .+..+++|++|++++|.+... ..+..+++|++|++++|.+....+..++.+++|+.|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 4455555555555554322 355555556666655544332 244555566666666655554445555555666666
Q ss_pred EecCCccchhHHhhhcCCCCCCeEEccCCC-CChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCC
Q 015457 161 NLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239 (406)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 239 (406)
++++|.+....+..+..+++|++|++++|. +.... .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 666665554445555556666666666654 43321 3445555555555555544322 344455555555555544
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=5.4e-17 Score=151.85 Aligned_cols=173 Identities=28% Similarity=0.361 Sum_probs=141.3
Q ss_pred ccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCc
Q 015457 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230 (406)
Q Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 230 (406)
+..+++|+.|+++++.+... + .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 34567888999998887642 3 47788999999999998876554 77899999999999988764 3678889999
Q ss_pred EEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCC
Q 015457 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310 (406)
Q Consensus 231 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 310 (406)
.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999988764 3577889999999999988875 567888999999999999887655 7889999999999999
Q ss_pred CChHHHHhhhcCCCCCEEeccCCCCCCh
Q 015457 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTD 338 (406)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 338 (406)
+.+. ..+..+++|+.|++++| .+..
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N-~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQ-ECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred CCCC--hHHccCCCCCEEEccCC-cCcC
Confidence 8875 35788899999999988 4443
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=1.1e-16 Score=130.13 Aligned_cols=152 Identities=22% Similarity=0.175 Sum_probs=73.4
Q ss_pred CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457 83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162 (406)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (406)
++|++|+++++.+.......+.++++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34455555555444333333444555555555555544443333444555555555555554433334445555555555
Q ss_pred cCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCCh
Q 015457 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241 (406)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 241 (406)
++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+. +.+++|+.|++..+.++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCc
Confidence 555554333333445555555555555554433333444555555555555432 233445555544444443
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=5.2e-17 Score=131.95 Aligned_cols=158 Identities=20% Similarity=0.116 Sum_probs=68.9
Q ss_pred CccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEecc
Q 015457 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235 (406)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 235 (406)
++++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|+++++.+.......+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 33444444443332222233334444444444444333322233334444444444444433333333444444444444
Q ss_pred CCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHH
Q 015457 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315 (406)
Q Consensus 236 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 315 (406)
+|.++......+..+++|+.|++++|.++..+...+..+++|+.|++++|.+.. .+++|+.|+++.|.+++..
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 444443333334444555555555555444333334445555555555554432 2445555555555555444
Q ss_pred HHhhh
Q 015457 316 VKHIK 320 (406)
Q Consensus 316 ~~~~~ 320 (406)
+..++
T Consensus 182 p~~~~ 186 (208)
T 2o6s_A 182 RNSAG 186 (208)
T ss_dssp BCTTS
T ss_pred eccCc
Confidence 44443
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=2e-16 Score=139.26 Aligned_cols=221 Identities=16% Similarity=0.094 Sum_probs=147.6
Q ss_pred CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEE-EeccCccChhHHHhhhcCCCCCEE
Q 015457 34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL-QISCSKVTDSGIAYLKGLQKLTLL 112 (406)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~l~~L~~L 112 (406)
+++++|++++|........+|.++++|++|++++|...+......+.++++++++ .+.++.+....+..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 5788888888775433334678888888888888765554555567777777664 445677776666777888888888
Q ss_pred EecCCCCChhhHHHHhcCCCCcEEEcCC-ccCChhhhhhccCC-CCccEEEecCCccchhHHhhhcCCCCCCeEEccC-C
Q 015457 113 NLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKI-GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-C 189 (406)
Q Consensus 113 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~ 189 (406)
++++|.+....+..+....++..+++.+ +.+.......|..+ ..++.|++++|.+....+. .....+|+.+.+.+ +
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-SSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh-hccccchhHHhhccCC
Confidence 8888877765444445556677777755 44555445555555 3578888888888743333 33456788888864 5
Q ss_pred CCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCC-CCChhHHHHhhCCCCCcEEECCC
Q 015457 190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDA 260 (406)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~ 260 (406)
.++......+..+++|+.|++++|.+....... +.+|+.|.+.++ .+.. .+ .+..+++|+.+++..
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~-lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKK-LP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCC-CC-CTTTCCSCCEEECSC
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCc-CC-CchhCcChhhCcCCC
Confidence 565555566778888888888888877654433 456666665444 2222 22 356778888888865
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=4.2e-17 Score=144.11 Aligned_cols=176 Identities=21% Similarity=0.237 Sum_probs=119.6
Q ss_pred CeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhc-CCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCC
Q 015457 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 260 (406)
Q Consensus 182 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 260 (406)
+.++++++.+...+ ..+ .+.++.|++++|.+.......+. .+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP-~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVP-QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCC-SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccC-ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777776664432 221 24577888888887766655565 777888888888877776666677777888888888
Q ss_pred CCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhh---hcCCCCCEEeccCCCCCC
Q 015457 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI---KDLSSLTLLNLSQNCNLT 337 (406)
Q Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 337 (406)
|.++......+..+++|+.|++++|.++...+..+..+++|+.|++++|.++......+ ..+++|+.|++++| .+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCC
Confidence 77777655566777777778877777776666667777777777777777776544444 45677777777777 566
Q ss_pred hhHHHHHHcCCC--ccEEEeeCCccC
Q 015457 338 DKTLELISGLTG--LVSLNVSNSRIT 361 (406)
Q Consensus 338 ~~~~~~l~~~~~--L~~L~l~~~~~~ 361 (406)
......+..++. ++.|++.+|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 655566666665 366777777654
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=1.3e-16 Score=130.51 Aligned_cols=152 Identities=19% Similarity=0.283 Sum_probs=84.9
Q ss_pred CEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHH-HHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccC
Q 015457 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284 (406)
Q Consensus 206 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (406)
+.++++++.+...+ ..+ .+.++.|++++|.++...+ ..+..+++|+.|++++|.++......+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~~iP-~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIP-EHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCc-cCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 45666666554432 111 2345666666666655422 2345566666666666666655444555566666666666
Q ss_pred CCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361 (406)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 361 (406)
|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6665555555555666666666666665554455555566666666665 455444455555556666666655543
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=123.29 Aligned_cols=132 Identities=21% Similarity=0.206 Sum_probs=74.4
Q ss_pred CccEEeecCCCCcCcC-ccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEE
Q 015457 59 KLESLNIKWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137 (406)
Q Consensus 59 ~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 137 (406)
.+++|+++++. ++.. ....+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|+
T Consensus 33 ~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 34566666543 2222 223345566666666666665554444555666666666666666555555555566666666
Q ss_pred cCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCC
Q 015457 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191 (406)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 191 (406)
+++|.+....+..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 666665555555555556666666666655544455555556666666665544
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=1.8e-15 Score=123.66 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=54.9
Q ss_pred CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457 84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163 (406)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (406)
++++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 34444444444333333333444444444444444443333344444444444444444443333333444444444444
Q ss_pred CCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCc
Q 015457 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214 (406)
Q Consensus 164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 214 (406)
+|.+....+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 444443333344444444444444444433333334444444444444443
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=1.7e-15 Score=123.84 Aligned_cols=133 Identities=18% Similarity=0.214 Sum_probs=91.6
Q ss_pred CCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEE
Q 015457 58 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137 (406)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 137 (406)
++|+.|+++++ .+.......+..+++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 56777777764 34444445666777777777777777666566677777777777777777765555566677777777
Q ss_pred cCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCC
Q 015457 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191 (406)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 191 (406)
+++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.+++.+|.+
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 777777766666677777777777777777655555566677777777777755
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=8.5e-16 Score=135.18 Aligned_cols=221 Identities=18% Similarity=0.120 Sum_probs=150.1
Q ss_pred CCccEEeecCCCCcCcCccccccCCCCccEEEeccCccCh-hHHHhhhcCCCCCE-EEecCCCCChhhHHHHhcCCCCcE
Q 015457 58 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTL-LNLEGCPVTAACLDSLSALGSLFY 135 (406)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~ 135 (406)
+++++|+++++ .++......+..+++|++|++++|.+.+ .....|.+++++.. +.+.++.+....+..+..+++|++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 57888888874 4565556677888888888888887644 33455777777665 455667777776777888888888
Q ss_pred EEcCCccCChhhhhhccCCCCccEEEecC-CccchhHHhhhcCC-CCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCC-
Q 015457 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD- 212 (406)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~- 212 (406)
+++++|.+....+..+....++..+++.. +.+....+..+..+ ..++.|++++|.++......+ ...+|+.+.+.+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccC
Confidence 88888887765555555566777788765 34543334444444 357788888888865544333 345788888864
Q ss_pred CcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCC-CCChHHHHHHhcCCCCCEEEccCC
Q 015457 213 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGA 285 (406)
Q Consensus 213 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~ 285 (406)
+.+.......++.+++|+.|++++|.++.... ..+.+|+.|.+.++ .+... ..+..+++|+.+++.++
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~---~~~~~L~~L~~l~~~~l~~l--P~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPS---YGLENLKKLRARSTYNLKKL--PTLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCS---SSCTTCCEEECTTCTTCCCC--CCTTTCCSCCEEECSCH
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccCh---hhhccchHhhhccCCCcCcC--CCchhCcChhhCcCCCC
Confidence 56666655667788888888888888776433 23566777776554 33332 24567788888887653
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=1.7e-16 Score=133.46 Aligned_cols=170 Identities=24% Similarity=0.301 Sum_probs=132.5
Q ss_pred CCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEE
Q 015457 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257 (406)
Q Consensus 178 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 257 (406)
+.++..+++.++.+.... .+..+++|+.|+++++.+.... .++.+++|+.|++++|.+++..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 345566677777665443 4567889999999999887653 57788999999999998887554 78899999999
Q ss_pred CCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCC
Q 015457 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337 (406)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 337 (406)
+++|.++..+ .+.. ++|+.|++++|.++.. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++| .+.
T Consensus 92 L~~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N-~i~ 163 (263)
T 1xeu_A 92 VNRNRLKNLN--GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGN-EIT 163 (263)
T ss_dssp CCSSCCSCCT--TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTS-CCC
T ss_pred CCCCccCCcC--cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCC-cCc
Confidence 9999888743 2333 7899999999988874 2477889999999999988876 25778899999999998 666
Q ss_pred hhHHHHHHcCCCccEEEeeCCccChh
Q 015457 338 DKTLELISGLTGLVSLNVSNSRITSA 363 (406)
Q Consensus 338 ~~~~~~l~~~~~L~~L~l~~~~~~~~ 363 (406)
.. ..+..+++|+.|++++|++...
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 55 5577888899999999887654
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=2.5e-16 Score=129.65 Aligned_cols=152 Identities=24% Similarity=0.228 Sum_probs=93.9
Q ss_pred CCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccC
Q 015457 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284 (406)
Q Consensus 205 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (406)
.+.++.+++.+...+. .-.++|+.|++++|.++...+..+..+++|+.|++++|.+...+...+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~---~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCC---CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4556666665544321 1236677777777777665555566677777777777776665445556666777777777
Q ss_pred CCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361 (406)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 361 (406)
|.++...+..+..+++|++|++++|.+... +..+..+++|+.|++++| .+.......+..+++|+.|++.+|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 766655555556666677777766666643 444556666666666666 555444445556666666666666654
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=2.1e-15 Score=133.23 Aligned_cols=176 Identities=21% Similarity=0.181 Sum_probs=111.9
Q ss_pred cEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHh-cCCCCcEEEcCCccCChhhhhhccCCCCccEEEecC
Q 015457 86 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164 (406)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (406)
+.++.+++.+...+. .+ .+.++.|++++|.+....+..+. .+++|++|++++|.+....+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 466776666654321 11 23577788888877776555555 677788888877777766666677777777777777
Q ss_pred CccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhh---cCCCCCcEEeccCCCCCh
Q 015457 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL---SGLTNLESINLSFTGISD 241 (406)
Q Consensus 165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~ 241 (406)
|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77765555566777777777777777766655666667777777777776665444444 345666666666666655
Q ss_pred hHHHHhhCCCC--CcEEECCCCCCC
Q 015457 242 GSLRKLAGLSS--LKSLNLDARQIT 264 (406)
Q Consensus 242 ~~~~~l~~~~~--L~~L~l~~~~~~ 264 (406)
.....+..++. ++.|++.+|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44444444444 245555555443
No 115
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.60 E-value=1.3e-14 Score=127.80 Aligned_cols=185 Identities=22% Similarity=0.283 Sum_probs=136.5
Q ss_pred CCCCCEEEcCCCcCCchhHHhhc-----CCCCCcEEeccCCCCChhHHHHhh-CCCCCcEEECCCCCCChHHHHHHh---
Q 015457 202 LCNLKCLELSDTQVGSSGLRHLS-----GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT--- 272 (406)
Q Consensus 202 ~~~L~~l~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~--- 272 (406)
.+.|+.++++++.++......+. .+++|+.|++++|.+++.....+. .+++|+.|++++|.++......+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46799999999998876555443 237899999999999876555544 357899999999999887655543
Q ss_pred --cCCCCCEEEccCCCCChhHHHH----hhcCCCCCEEEccCCCCChHHHH----hhhcCCCCCEEeccCCCCCChhHHH
Q 015457 273 --SLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGVK----HIKDLSSLTLLNLSQNCNLTDKTLE 342 (406)
Q Consensus 273 --~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~ 342 (406)
..++|++|++++|.+++..... +..+++|++|++++|.+.+.+.. .+..+++|+.|++++| .+.+....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence 4678999999999987654433 46788999999999999876643 4556789999999999 77775543
Q ss_pred ----HHHcCCCccEEEeeCCccChhHHHhcCCC---C--CccEEE--ccCCCCChh
Q 015457 343 ----LISGLTGLVSLNVSNSRITSAGLRHLKPL---K--NLRSLT--LESCKVTAN 387 (406)
Q Consensus 343 ----~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~--~L~~l~--l~~~~~~~~ 387 (406)
.+...++|+.|++++|.+++.....+... . .|+.+. +.++.+++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 34467899999999999988777666322 2 277777 777777765
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=2.1e-15 Score=139.64 Aligned_cols=135 Identities=17% Similarity=0.130 Sum_probs=71.0
Q ss_pred CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEcc
Q 015457 108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187 (406)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 187 (406)
+++.|+++++.+.+. |..+ .++|++|++++|.+.. .+ ..+++|+.|++++|.+.. +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 666777766666552 3322 2566666666666653 22 334666666666666653 333 322 66666666
Q ss_pred CCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCCh
Q 015457 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265 (406)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 265 (406)
+|.++.... .+++|+.|++++|.+..... .+++|+.|++++|.++.... +. ++|+.|++++|.++.
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc
Confidence 665544222 34556666666665543221 34555555555555544211 22 455555555555443
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=1.8e-15 Score=139.97 Aligned_cols=187 Identities=19% Similarity=0.120 Sum_probs=118.7
Q ss_pred CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457 83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162 (406)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (406)
.+++.|+++++.+.+.+ ..+ .++|+.|++++|.+... | ..+++|++|++++|.+.. .+. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp-~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLP-DNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCCC-SCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCccC-HhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 37888888887776532 222 36788888888877753 4 456788888888887776 333 443 7888888
Q ss_pred cCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChh
Q 015457 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242 (406)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 242 (406)
++|.+.+ +|. .+++|+.|++++|.++.... .+++|+.|++++|.+...+. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 8887764 333 56778888888887765322 46778888888887766433 43 7788888888877642
Q ss_pred HHHHhhCCCCC-------cEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhc
Q 015457 243 SLRKLAGLSSL-------KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297 (406)
Q Consensus 243 ~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 297 (406)
.. +.. +| +.|++++|.++..+ ..+..+++|+.|++++|.+++..+..+..
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCCCCC-GGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCcceecC-HHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 22 222 44 66666666666542 23334566666666666666555554433
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=4.3e-16 Score=131.05 Aligned_cols=164 Identities=24% Similarity=0.337 Sum_probs=132.7
Q ss_pred CCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEec
Q 015457 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234 (406)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 234 (406)
.++..++++.+.+.+.. .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+..... +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 45566667777766422 4567789999999999886543 57788999999999999887654 788999999999
Q ss_pred cCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChH
Q 015457 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314 (406)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 314 (406)
++|.++.... +.. ++|+.|++++|.++.. ..+..+++|+.|++++|.+++.. .+..+++|+.|++++|.+.+.
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence 9998876322 333 8999999999999885 45788999999999999998753 578899999999999999886
Q ss_pred HHHhhhcCCCCCEEeccCC
Q 015457 315 GVKHIKDLSSLTLLNLSQN 333 (406)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~~ 333 (406)
..+..+++|+.|++++|
T Consensus 166 --~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp --TTSTTCCCCCEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCC
Confidence 56788899999999998
No 119
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.59 E-value=3e-14 Score=125.56 Aligned_cols=185 Identities=23% Similarity=0.348 Sum_probs=138.7
Q ss_pred CCCCCeEEccCCCCChhhhHhhhC-----CCCCCEEEcCCCcCCchhHHhhc-CCCCCcEEeccCCCCChhHHHHhh---
Q 015457 178 LTNLESLNLDSCGIGDEGLVNLTG-----LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA--- 248 (406)
Q Consensus 178 ~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~--- 248 (406)
.+.|+.+++++|.++......+.. .++|+.|++++|.++......+. .+++|+.|++++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467999999999988765555433 26899999999998776554443 457899999999999886665553
Q ss_pred --CCCCCcEEECCCCCCChHHHHH----HhcCCCCCEEEccCCCCChhH----HHHhhcCCCCCEEEccCCCCChHHHHh
Q 015457 249 --GLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH 318 (406)
Q Consensus 249 --~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~ 318 (406)
..++|++|++++|.++..+... +..+++|++|++++|.+++.+ ...+..+++|++|++++|.+++.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 4688999999999998755443 467889999999999998755 344567889999999999999876554
Q ss_pred h----hcCCCCCEEeccCCCCCChhHHHHHHcCC--C---ccEEE--eeCCccChh
Q 015457 319 I----KDLSSLTLLNLSQNCNLTDKTLELISGLT--G---LVSLN--VSNSRITSA 363 (406)
Q Consensus 319 ~----~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--~---L~~L~--l~~~~~~~~ 363 (406)
+ ..+++|++|++++| .+.......+..+. . ++.+. +.++.+.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 4 45799999999999 78888877776542 2 66666 666666543
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=8.2e-15 Score=120.58 Aligned_cols=132 Identities=23% Similarity=0.196 Sum_probs=75.2
Q ss_pred CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457 83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162 (406)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (406)
++|++|++++|.+....+..+.++++|+.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 55666666666665554555556666666666666655544444555666666666666655544445555566666666
Q ss_pred cCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcC
Q 015457 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215 (406)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 215 (406)
++|.+. .+|..+..+++|+.|++++|.+....+..+..+++|+.+++.+|.+
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 666555 3444455556666666666655544444445555555555555544
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=5.9e-15 Score=131.33 Aligned_cols=266 Identities=12% Similarity=0.149 Sum_probs=146.2
Q ss_pred CCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEE
Q 015457 82 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 161 (406)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (406)
+..++.+.+... +......+|.++ +|+.+.+..+ +.......|.+ .+|+.+.+.. .+.......|..+++|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 355555555432 222333444443 4666665443 33333334444 3466666654 34444445566666666666
Q ss_pred ecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCCh
Q 015457 162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241 (406)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 241 (406)
+..+.+.......|. ..+|+.+.+..+ +......++..+++|+.+.+..+ +.......+.. .+|+.+.+. +.++.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence 665555533333443 356666666533 44445555666666666666543 33333344444 456666663 23444
Q ss_pred hHHHHhhCCCCCcEEECCCCCCC-----hHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHH
Q 015457 242 GSLRKLAGLSSLKSLNLDARQIT-----DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 316 (406)
Q Consensus 242 ~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 316 (406)
.....|.++++|+.+.+.++... ..+..++..|++|+.+.+.. .++.....+|..|++|+.+.+..+ ++....
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 44455566666666666655443 23345666677777777763 455555666677777777777543 555555
Q ss_pred HhhhcCCCCCEEeccCCCCCChhHHHHHHcCC-CccEEEeeCCccC
Q 015457 317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLT-GLVSLNVSNSRIT 361 (406)
Q Consensus 317 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~ 361 (406)
..|..| +|+.+.+.++ .........+.+++ +++.|.+..+.+.
T Consensus 340 ~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred HhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHHH
Confidence 566677 7777777776 44444444455553 5677777766543
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=2e-15 Score=134.32 Aligned_cols=268 Identities=14% Similarity=0.133 Sum_probs=202.4
Q ss_pred hcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCe
Q 015457 104 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183 (406)
Q Consensus 104 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 183 (406)
..+..++.+.+.+. +.......|..+ +|+.+.+..+ +.......|.. .+|+.+.+.. .+......+|..+++|+.
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 34567788877653 455445566664 7999998765 56566667776 4699999876 455455677888999999
Q ss_pred EEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCC
Q 015457 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263 (406)
Q Consensus 184 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 263 (406)
+.+..+.+.......+. ..+|+.+.+..+ +.......+..|++|+.+.+..+ ++......|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 99998888776666665 588999999754 66666778889999999999764 55544555655 789999994 446
Q ss_pred ChHHHHHHhcCCCCCEEEccCCCCC-----hhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCCh
Q 015457 264 TDTGLAALTSLTGLTHLDLFGARIT-----DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 338 (406)
Q Consensus 264 ~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 338 (406)
+..+..++..|++|+.+.+.++... .....+|..|++|+.+.+.+ .+...+...|..|++|+.+.+.++ +..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~ 336 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQ 336 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccE
Confidence 6666678889999999999887654 45566788899999999984 477776778888999999999765 666
Q ss_pred hHHHHHHcCCCccEEEeeCCccChhHHHhcCCCC-CccEEEccCCCCC
Q 015457 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVT 385 (406)
Q Consensus 339 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~l~l~~~~~~ 385 (406)
.....+.++ +|+.+++.++.........|.+++ +++.+.+..+.+.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 667778888 999999999987766666777774 6888988876544
No 123
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=2.3e-15 Score=134.74 Aligned_cols=334 Identities=18% Similarity=0.182 Sum_probs=210.1
Q ss_pred CHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHh
Q 015457 23 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 102 (406)
Q Consensus 23 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 102 (406)
+.+...+|.+|.+|+.+.+... ....+..+|.+|++|+.+++..+ ++......+..|++|+.+.+..+ +......+
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 4455566777888888887643 22223446777888888887643 44444556667777777665433 22233344
Q ss_pred hhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCC
Q 015457 103 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182 (406)
Q Consensus 103 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 182 (406)
|.++..++...... ........|..+.+|+.+.+..+. .......|..+.+|+.+.+..+ +......++..+..|+
T Consensus 136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 55554333222222 222223456777888888876532 3344556777777877777654 3323345566777777
Q ss_pred eEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCC
Q 015457 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262 (406)
Q Consensus 183 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 262 (406)
.+.+..+.. .... .......|+.+.+.... .......+..+..++.+.+..+. .......+..+..++.+......
T Consensus 212 ~i~~~~~~~-~i~~-~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 212 NMEFPNSLY-YLGD-FALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp BCCCCTTCC-EECT-TTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE
T ss_pred eeecCCCce-Eeeh-hhcccCCCceEEECCCc-eecccccccccccceeEEcCCCc-ceeeccccccccccceeccCcee
Confidence 777765422 1111 22234677777775432 33334456677888888886553 22333445667788887776654
Q ss_pred CChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHH
Q 015457 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342 (406)
Q Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 342 (406)
+.. ..+..+.+|+.+.+..+ ++..+..++..+.+|+++++.++ ++..+...|..|.+|+.+.+..+ +......
T Consensus 288 i~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~ 360 (394)
T 4fs7_A 288 VPE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN 360 (394)
T ss_dssp ECT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTT
T ss_pred ecc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHH
Confidence 333 45667888998888654 55556667888899999998754 66666677888999999999765 6666677
Q ss_pred HHHcCCCccEEEeeCCccChhHHHhcCCCCCccEE
Q 015457 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377 (406)
Q Consensus 343 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l 377 (406)
.+.+|++|+.+++..+- ... ..+|.+|++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~~-~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKRL-EQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGGG-GGG-GGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCCC-EEh-hheecCCCCCcEE
Confidence 78899999999997652 222 3578889988876
No 124
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=1.6e-15 Score=135.71 Aligned_cols=332 Identities=14% Similarity=0.131 Sum_probs=234.2
Q ss_pred ccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhc
Q 015457 50 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129 (406)
Q Consensus 50 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 129 (406)
+..+|.+|.+|+.+.+.. .++......+.+|++|+.+.+..+ +......+|.++..|+.+.+..+ +.......|..
T Consensus 63 g~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp CTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred HHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 445788999999999974 366666778889999999999754 44455567888899988776543 33333445555
Q ss_pred CCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEE
Q 015457 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 209 (406)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 209 (406)
+..++...... ........|..+++|+.+.+..+. .......|..+.+|+.+.+..+ +.......+..+..|+.+.
T Consensus 139 ~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 139 CDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp CCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 54433333222 223345678888999999997653 2244567788899999999765 5555666778888898887
Q ss_pred cCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCCh
Q 015457 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289 (406)
Q Consensus 210 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 289 (406)
+..+.... ......+.+|+.+.+... ++......+..+..++.+.+..+. .......+..+..++.+......+.
T Consensus 215 ~~~~~~~i--~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~- 289 (394)
T 4fs7_A 215 FPNSLYYL--GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP- 289 (394)
T ss_dssp CCTTCCEE--CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEEC-
T ss_pred cCCCceEe--ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeec-
Confidence 76554221 122334578999888653 333334456678999999997653 2333456677888998887765443
Q ss_pred hHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcC
Q 015457 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 369 (406)
Q Consensus 290 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 369 (406)
...+..+.+|+++.+.++ +...+...|..|.+|+.+++.++ +.......+.+|.+|+.+++..+ ++.+...+|.
T Consensus 290 --~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 290 --EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp --TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred --cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 345678899999999764 56666677889999999999764 67667778889999999999876 7777778999
Q ss_pred CCCCccEEEccCCCCChhhHHHHhhcCCCCccccC
Q 015457 370 PLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404 (406)
Q Consensus 370 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~ 404 (406)
+|++|+.+++..+ +.... ..-.+|++|+.+|
T Consensus 364 ~C~~L~~i~lp~~-~~~~~---~~F~~c~~L~~IK 394 (394)
T 4fs7_A 364 GCINLKKVELPKR-LEQYR---YDFEDTTKFKWIK 394 (394)
T ss_dssp TCTTCCEEEEEGG-GGGGG---GGBCTTCEEEEEC
T ss_pred CCCCCCEEEECCC-CEEhh---heecCCCCCcEEC
Confidence 9999999999764 22211 2345888888765
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=3e-15 Score=117.05 Aligned_cols=134 Identities=25% Similarity=0.241 Sum_probs=90.1
Q ss_pred CCCCcEEECCCCCCC-hHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEE
Q 015457 250 LSSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 328 (406)
Q Consensus 250 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 328 (406)
.++|++|++++|.+. +..+..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356666666666665 11123345566777777777776654 456667777777777777776545555667788888
Q ss_pred eccCCCCCChh-HHHHHHcCCCccEEEeeCCccChhHH---HhcCCCCCccEEEccCCCCCh
Q 015457 329 NLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 329 ~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~l~l~~~~~~~ 386 (406)
++++| .+... ....+..+++|+.|++++|+++.... ..+..+++|+.|++++|.+.+
T Consensus 101 ~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 88877 55553 23566677888888888888776544 466778888888888887654
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=2e-16 Score=147.19 Aligned_cols=193 Identities=15% Similarity=0.123 Sum_probs=108.5
Q ss_pred cCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCc
Q 015457 6 SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 85 (406)
Q Consensus 6 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 85 (406)
..+++|+.|+++++.. ...|..+..+++|+.|+++++......+..+ +.++ .....+..+..+++|
T Consensus 346 ~~~~~L~~L~Ls~n~L--~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll------~~~~------~~~~~~~~l~~l~~L 411 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS--TVLQSELESCKELQELEPENKWCLLTIILLM------RALD------PLLYEKETLQYFSTL 411 (567)
T ss_dssp STTTTSSSCCCCHHHH--HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------HHHC------TGGGHHHHHHHHHHH
T ss_pred ccCccceeccCChhhH--HhhHHHHHHHHHHHHhccccchhhhhHHHHH------Hhcc------cccCCHHHHHHHHhc
Confidence 5678888888888863 3457778888888888886653111110000 0000 111223334444555
Q ss_pred cEEE-eccCccChhHHH-----hhhc--CCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCc
Q 015457 86 KSLQ-ISCSKVTDSGIA-----YLKG--LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157 (406)
Q Consensus 86 ~~L~-l~~~~~~~~~~~-----~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 157 (406)
+.|+ ++.+.+...... .+.. ...|+.|++++|.+++. |. +..+++|+.|++++|.+. ..|..++.+++|
T Consensus 412 ~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 488 (567)
T 1dce_A 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL 488 (567)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred ccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCC
Confidence 5554 333222111100 0111 12467777777766663 33 666777777777777666 345566667777
Q ss_pred cEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhh-hHhhhCCCCCCEEEcCCCcCCc
Q 015457 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSDTQVGS 217 (406)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~ 217 (406)
+.|++++|.+.+ +| .+..+++|+.|++++|.++... +..+..+++|+.|++++|.+..
T Consensus 489 ~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 489 EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 777777776664 34 5666677777777777665554 5556666666666666666543
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=5.4e-14 Score=109.87 Aligned_cols=131 Identities=24% Similarity=0.160 Sum_probs=60.9
Q ss_pred CCCcEeeccCcccc-cCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEE
Q 015457 34 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 112 (406)
Q Consensus 34 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (406)
++|++|++++|... ...+..+..+++|++|++++|. ++.. ..+..+++|++|++++|.+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~---------------- 84 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIF---------------- 84 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCC----------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCc----------------
Confidence 55666666665532 1222334455555555555543 2222 34444555555555555444
Q ss_pred EecCCCCChhhHHHHhcCCCCcEEEcCCccCChhh-hhhccCCCCccEEEecCCccchhHH---hhhcCCCCCCeEEccC
Q 015457 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG-CEKFSKIGSLKVLNLGFNEITDECL---VHLKGLTNLESLNLDS 188 (406)
Q Consensus 113 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~ 188 (406)
...+..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+....+ ..+..+++|++|++.+
T Consensus 85 --------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 85 --------GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp --------SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred --------hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 333333334444444444444444321 1344445555555555554443222 2444555555555555
Q ss_pred CCC
Q 015457 189 CGI 191 (406)
Q Consensus 189 ~~~ 191 (406)
|..
T Consensus 157 n~~ 159 (168)
T 2ell_A 157 RED 159 (168)
T ss_dssp TTS
T ss_pred CCh
Confidence 543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=6.3e-14 Score=107.10 Aligned_cols=107 Identities=23% Similarity=0.242 Sum_probs=45.8
Q ss_pred CCCcEeeccCcccc-cCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEE
Q 015457 34 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 112 (406)
Q Consensus 34 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (406)
++|++|++++|... ...+..+..+++|++|++++|. ++.. ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45555555555432 1223334445555555555432 2221 334444444555444444443333333344444444
Q ss_pred EecCCCCChh-hHHHHhcCCCCcEEEcCCccC
Q 015457 113 NLEGCPVTAA-CLDSLSALGSLFYLNLNRCQL 143 (406)
Q Consensus 113 ~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~ 143 (406)
++++|.+... .+..+..+++|++|++++|.+
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 4444444432 113333344444444444433
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=5.6e-14 Score=107.43 Aligned_cols=63 Identities=29% Similarity=0.410 Sum_probs=23.8
Q ss_pred CCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChh-HHHHhhcCCCCCEEEccCCCC
Q 015457 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGL 311 (406)
Q Consensus 249 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 311 (406)
.+++|+.|++++|.+....+..+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+
T Consensus 62 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 62 KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 333444444444433332222333334444444444444332 112333344444444444433
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=9e-16 Score=142.79 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=91.8
Q ss_pred CCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECC
Q 015457 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259 (406)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 259 (406)
.|+.|++++|.++.. +. +..+++|+.|++++|.+... +..++.+++|+.|++++|.++.. + .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCC-cC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECC
Confidence 578888888877654 32 77788888888888887743 45677888888888888888763 3 67788888888888
Q ss_pred CCCCChHH-HHHHhcCCCCCEEEccCCCCChhHH---HHhhcCCCCCEEEc
Q 015457 260 ARQITDTG-LAALTSLTGLTHLDLFGARITDSGA---AYLRNFKNLRSLEI 306 (406)
Q Consensus 260 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 306 (406)
+|.+++.. +..+..+++|+.|++++|.++...+ ..+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888765 5677888888888888888765432 23455788888764
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=2.8e-14 Score=112.31 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=53.8
Q ss_pred CCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHH-HHHHcCCCccEEE
Q 015457 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLN 354 (406)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~ 354 (406)
+|+.|++++|.++.. ..+..+++|++|++++|.++...+..+..+++|+.|++++| .+..... ..+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEE
Confidence 455555555544432 23444555555555555555443233345555555555555 3333221 2444555566666
Q ss_pred eeCCccChhHHH---hcCCCCCccEEEccCCCCCh
Q 015457 355 VSNSRITSAGLR---HLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 355 l~~~~~~~~~~~---~l~~~~~L~~l~l~~~~~~~ 386 (406)
+++|++...... .+..+++|+.+++++|...+
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 666655432221 34455666666666665544
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.41 E-value=1.6e-13 Score=108.24 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=70.0
Q ss_pred CcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccC
Q 015457 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308 (406)
Q Consensus 229 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 308 (406)
.+.++++++.++.... ...++|++|++++|.++......+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCT---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCC---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3455565555544221 1235666666666666654444455556666666666666554444455556666666666
Q ss_pred CCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361 (406)
Q Consensus 309 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 361 (406)
|.+++..+..+..+++|+.|++++| .+.......+..+++|+.|++++|++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 6655544444455556666666555 444443333445555555555555544
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=9.3e-13 Score=105.07 Aligned_cols=109 Identities=21% Similarity=0.204 Sum_probs=56.6
Q ss_pred CccEEEeccCccChhHHH-hhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457 84 NLKSLQISCSKVTDSGIA-YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162 (406)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (406)
++++|++++|.+....+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|+.|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444555554444433322 2445555555555555555544445555555555555555555444444555555555555
Q ss_pred cCCccchhHHhhhcCCCCCCeEEccCCCCC
Q 015457 163 GFNEITDECLVHLKGLTNLESLNLDSCGIG 192 (406)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 192 (406)
++|.+....|..+..+++|++|++++|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 555555444555555555556655555543
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=7.1e-13 Score=105.77 Aligned_cols=129 Identities=18% Similarity=0.133 Sum_probs=88.5
Q ss_pred cEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccc-cccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEec
Q 015457 37 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK-PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 115 (406)
Q Consensus 37 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 115 (406)
++++++++.. ...+..+. ++|++|+++++. ++..... .+..+++|++|++++|.+....+..+.++++|++|+++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 5677766553 33333332 377778887753 3433332 46677788888888777776666677777788888888
Q ss_pred CCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccch
Q 015457 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169 (406)
Q Consensus 116 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 169 (406)
+|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 887777666667777788888888877777667777777778888887776653
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=2.2e-13 Score=107.19 Aligned_cols=133 Identities=19% Similarity=0.245 Sum_probs=77.2
Q ss_pred CCCCCcEEeccCCCCChhHHHHhhC-CCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCE
Q 015457 225 GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303 (406)
Q Consensus 225 ~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 303 (406)
.+++|+.|++++|.++.. + .+.. .++|+.|++++|.+++. ..+..+++|+.|++++|.++...+..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 345555555555555432 1 1222 23666666666666553 34555666666666666666544444456677777
Q ss_pred EEccCCCCChHHH-HhhhcCCCCCEEeccCCCCCChhHH---HHHHcCCCccEEEeeCCccCh
Q 015457 304 LEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVSNSRITS 362 (406)
Q Consensus 304 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~ 362 (406)
|++++|.+..... ..+..+++|+.|++++| .+..... ..+..+++|+.|++++|...+
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 7777776655432 25566777777777777 3433222 146677777777777777544
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=110.07 Aligned_cols=126 Identities=22% Similarity=0.243 Sum_probs=77.9
Q ss_pred cEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCC
Q 015457 230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309 (406)
Q Consensus 230 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 309 (406)
+.++++++.++... .. -.+++++|++++|.++..+ ..+..+++|+.|++++|.++...+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip-~~--~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KG--IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCC-SC--CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCC-CC--CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666655422 11 1356777777777666543 45666667777777777766655555666667777777776
Q ss_pred CCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCcc
Q 015457 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 360 (406)
Q Consensus 310 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 360 (406)
.++...+..|..+++|+.|++++| .+.......+..+++|+.|++++|++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 666665555666666666666666 55554444555666666666666654
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=3.8e-15 Score=119.76 Aligned_cols=133 Identities=23% Similarity=0.257 Sum_probs=99.1
Q ss_pred HhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCC
Q 015457 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325 (406)
Q Consensus 246 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 325 (406)
.+..+++|++|++++|.+...+ .+..+++|+.|++++|.++.. +..+..+++|++|++++|.+.+. + .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL-S-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcC-C-ccccCCCC
Confidence 6677788888888888777743 666778888888888887753 33455567888999988888875 2 57778889
Q ss_pred CEEeccCCCCCChhH-HHHHHcCCCccEEEeeCCccChhHH----------HhcCCCCCccEEEccCCCCCh
Q 015457 326 TLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL----------RHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 326 ~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~----------~~l~~~~~L~~l~l~~~~~~~ 386 (406)
+.|++++| .+.... ...+..+++|+.|++++|++.+..+ ..+..+++|+.|+ +++++.
T Consensus 118 ~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999988 566543 3577888999999999998766433 2367788899886 666654
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.37 E-value=3.1e-12 Score=114.34 Aligned_cols=314 Identities=16% Similarity=0.158 Sum_probs=147.0
Q ss_pred ccCCC-CccEEeecCCCCcCcCccccccCCCCccEEEeccCc---cChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhc
Q 015457 54 LKGLM-KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK---VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 129 (406)
Q Consensus 54 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 129 (406)
|.++. .|+.+.+.. .++......|.+|.+|+.+.+..+. +......+|.++..|+.+.+..+ +.......+..
T Consensus 59 F~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred ccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 44443 355555543 2344444455555666665554331 33333344555555555544332 22222334455
Q ss_pred CCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEE
Q 015457 130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 209 (406)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 209 (406)
+.+|+.+.+... ........|..+..|+.+.+..+ +......+|.. ..|+.+.+... .......++..+..+....
T Consensus 136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTIT 211 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred hcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceec
Confidence 556666665432 22233344555555555555433 11122223322 34555555443 2223334444555555554
Q ss_pred cCCCcCCchhHHh-------------hcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCC
Q 015457 210 LSDTQVGSSGLRH-------------LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276 (406)
Q Consensus 210 l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 276 (406)
............. ......+..+.+.. .+.......+.++..|+.+.+... +...+..++..++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~ 289 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPA 289 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc-cceecCcccccccc
Confidence 4433221111000 01112233333321 122222334556667777776543 22223345566677
Q ss_pred CCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEee
Q 015457 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356 (406)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 356 (406)
|+.+.+. +.++.....+|..|.+|+++.+.++ ++..+...|..|.+|+.+.+.++ +.......+.+|++|+.+++.
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEES
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEEC
Confidence 7777764 3444445556666777777777643 44444556666777777777553 555555566677777777777
Q ss_pred CCccChhHHHhcCCCCCccEEEccCCC
Q 015457 357 NSRITSAGLRHLKPLKNLRSLTLESCK 383 (406)
Q Consensus 357 ~~~~~~~~~~~l~~~~~L~~l~l~~~~ 383 (406)
++.. ...++..+.+|+.+.+..+.
T Consensus 366 ~~~~---~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 366 GSRS---QWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp SCHH---HHHTCBCCCCC---------
T ss_pred Ccee---ehhhhhccCCCCEEEeCCCC
Confidence 6542 12355566667776665544
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=3.1e-12 Score=101.95 Aligned_cols=108 Identities=21% Similarity=0.234 Sum_probs=58.5
Q ss_pred CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457 83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162 (406)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (406)
++|++|++++|.+...+ ..+.++++|+.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 35555555555554322 44555555555555555555554445555555566666555555554455555555555555
Q ss_pred cCCccchhHHhhhcCCCCCCeEEccCCCC
Q 015457 163 GFNEITDECLVHLKGLTNLESLNLDSCGI 191 (406)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 191 (406)
++|.+....+..+..+++|+.+++.+|.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55555543333455555555555555543
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=4.1e-12 Score=100.00 Aligned_cols=108 Identities=21% Similarity=0.194 Sum_probs=46.2
Q ss_pred CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457 84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163 (406)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (406)
+|++|+++++.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444433333333444444444444444443333333444444444444444443333334444444444444
Q ss_pred CCccchhHHhhhcCCCCCCeEEccCCCC
Q 015457 164 FNEITDECLVHLKGLTNLESLNLDSCGI 191 (406)
Q Consensus 164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 191 (406)
+|.+....+..+..+++|+++++++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 4444432223334444444444444443
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.33 E-value=1e-11 Score=110.94 Aligned_cols=313 Identities=18% Similarity=0.156 Sum_probs=190.7
Q ss_pred ccCC-CCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcc---cccCccccccCCCCccEEeecCCCCcCcCcccccc
Q 015457 5 LSGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 80 (406)
Q Consensus 5 ~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 80 (406)
|.++ ..|+.+.+... ++.+...+|.+|.+|+.+.+..+. ....+..+|..|.+|+.+.+... ++......+.
T Consensus 59 F~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~ 134 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFH 134 (394)
T ss_dssp TTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTT
T ss_pred ccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhh
Confidence 5556 35888888654 556666778888888888876542 11223345777778877777542 4444556677
Q ss_pred CCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEE
Q 015457 81 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160 (406)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (406)
.+.+|+.+.+... +.......+..+..|+.+.+..+ +.......|. ..+|+.+.+.... .......|..+..++..
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTCCEE
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcc-cccccchhhhcccccee
Confidence 7888888887643 23334456677788888877654 3332233343 3567777776532 22334455566666666
Q ss_pred EecCCccchhHHh-------------hhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCC
Q 015457 161 NLGFNEITDECLV-------------HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 227 (406)
Q Consensus 161 ~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~ 227 (406)
............. .+.....+..+.+... +......++..+..|+.+.+.... .......+..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~ 288 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCP 288 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCT
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEeccccc-ceecCccccccc
Confidence 5543322100000 0011223334444322 223345567778889998886543 334456677889
Q ss_pred CCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEcc
Q 015457 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307 (406)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 307 (406)
.|+.+.+.. .++......|.++.+|+++.+..+ ++..+..+|..|.+|+.+.+..+ ++..+..+|..|++|+++++.
T Consensus 289 ~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 289 ALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred ccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence 999998853 455555567788999999999764 55555678888999999999653 666667788999999999998
Q ss_pred CCCCChHHHHhhhcCCCCCEEeccCC
Q 015457 308 GGGLTDAGVKHIKDLSSLTLLNLSQN 333 (406)
Q Consensus 308 ~~~~~~~~~~~~~~~~~L~~L~l~~~ 333 (406)
++.. ....+..+.+|+.+.+..+
T Consensus 366 ~~~~---~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 366 GSRS---QWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp SCHH---HHHTCBCCCCC--------
T ss_pred Ccee---ehhhhhccCCCCEEEeCCC
Confidence 8642 2345666788888887665
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=3.4e-13 Score=129.48 Aligned_cols=112 Identities=20% Similarity=0.146 Sum_probs=52.0
Q ss_pred ccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCcc
Q 015457 79 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158 (406)
Q Consensus 79 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (406)
+..+++|+.|++++|.+... +..+..+++|++|++++|.+.. .|..+..+++|++|++++|.+. ..|..+..+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 34445555555555444422 2223344555555555554442 2444445555555555555544 2344444455555
Q ss_pred EEEecCCccchhHHhhhcCCCCCCeEEccCCCCChh
Q 015457 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194 (406)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 194 (406)
+|++++|.+. .+|..+..+++|+.|++++|.+...
T Consensus 297 ~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp EEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred EEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC
Confidence 5555555444 3344444555555555555554433
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=4e-13 Score=128.98 Aligned_cols=120 Identities=19% Similarity=0.170 Sum_probs=73.1
Q ss_pred HHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCC
Q 015457 100 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179 (406)
Q Consensus 100 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 179 (406)
+..+..++.|+.|++++|.+... +..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+. .+|..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 44556666777777777766543 444556677777777777666 44555666677777777777666 4466666667
Q ss_pred CCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhh
Q 015457 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223 (406)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l 223 (406)
+|++|++++|.++.. +..+..+++|+.|++++|.+....+..+
T Consensus 294 ~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 777777777666533 3346666667777777666665544444
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.25 E-value=4.5e-13 Score=107.62 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=74.7
Q ss_pred HHHhcCCCCcEeeccCcccccCccc------cccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHH
Q 015457 28 KAFAGLINLVKLDLERCTRIHGGLV------NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 101 (406)
Q Consensus 28 ~~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 101 (406)
..+.....++.++++++......+. .+..+++|++|++++|. +.... .+..+++|++|++++|.+... +.
T Consensus 12 ~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~ 87 (198)
T 1ds9_A 12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS--SLSGMENLRILSLGRNLIKKI-EN 87 (198)
T ss_dssp HHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC--CHHHHTTCCEEEEEEEEECSC-SS
T ss_pred HHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc--ccccCCCCCEEECCCCCcccc-cc
Confidence 3455566666666655442222121 45556666666666543 33221 455566666666666665532 23
Q ss_pred hhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhh-hhccCCCCccEEEecCCccchh
Q 015457 102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDE 170 (406)
Q Consensus 102 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~ 170 (406)
.+..+++|+.|++++|.+... + .+..+++|++|++++|.+..... ..+..+++|+.|++++|.+...
T Consensus 88 ~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred hhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 344455666666666666553 2 45556666666666666654322 3455666666666666655443
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.25 E-value=2.6e-11 Score=92.87 Aligned_cols=101 Identities=20% Similarity=0.395 Sum_probs=72.3
Q ss_pred CCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC----CCccEEEeeCCc-cChhHHHhcCCCCCc
Q 015457 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNSR-ITSAGLRHLKPLKNL 374 (406)
Q Consensus 300 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~-~~~~~~~~l~~~~~L 374 (406)
.|++|++++|.+++.+...+..|++|+.|+|++|..+++.....++.+ ++|++|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 577777777777777777777778888888888877777777777654 468888888875 777777777778888
Q ss_pred cEEEccCCC-CChhhH--HHHhhcCCCCcc
Q 015457 375 RSLTLESCK-VTANDI--KRLQSRDLPNLV 401 (406)
Q Consensus 375 ~~l~l~~~~-~~~~~~--~~~~~~~~~~l~ 401 (406)
+.|++++|+ ++..+. ..+ ...+|+++
T Consensus 142 ~~L~L~~c~~Itd~gl~~~~L-~~~lP~l~ 170 (176)
T 3e4g_A 142 KYLFLSDLPGVKEKEKIVQAF-KTSLPSLE 170 (176)
T ss_dssp CEEEEESCTTCCCHHHHHHHH-HHHCTTCE
T ss_pred CEEECCCCCCCCchHHHHHHH-HHHCCCcE
Confidence 888888886 555442 333 34667665
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.16 E-value=3.6e-10 Score=98.70 Aligned_cols=200 Identities=19% Similarity=0.217 Sum_probs=121.2
Q ss_pred CCCCCeEEccCCCCCh-h---h----hHhhhCCCCCCEEEcCCCcCC---------chhHHhhcCCCCCcEEeccCCCCC
Q 015457 178 LTNLESLNLDSCGIGD-E---G----LVNLTGLCNLKCLELSDTQVG---------SSGLRHLSGLTNLESINLSFTGIS 240 (406)
Q Consensus 178 ~~~L~~L~l~~~~~~~-~---~----~~~~~~~~~L~~l~l~~~~~~---------~~~~~~l~~~~~L~~L~l~~~~~~ 240 (406)
...++.|.+....... . . ......+++|+.|.+...... ......+..+|+|+.|.++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3456777776443321 1 1 112345688999988654321 112344567788888888776211
Q ss_pred hhHHHHhhCCCCCcEEECCCCCCChHHHHHHh--cCCCCCEEEccCC--CC-Chh----HHHHh--hcCCCCCEEEccCC
Q 015457 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGA--RI-TDS----GAAYL--RNFKNLRSLEICGG 309 (406)
Q Consensus 241 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~-~~~----~~~~~--~~~~~L~~L~l~~~ 309 (406)
... .+ ..++|++|.+..+.+.......+. .+|+|++|+++.+ .. ... ....+ ..+|+|+.|++.+|
T Consensus 186 ~l~--~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 SIG--KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp BCC--SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred eec--cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 111 12 267888888888887776655554 6788888887531 11 110 00112 24678888888888
Q ss_pred CCChHHHHhhh---cCCCCCEEeccCCCCCChhHHHHH----HcCCCccEEEeeCCccChhHHHhcCC-CCCccEEEccC
Q 015457 310 GLTDAGVKHIK---DLSSLTLLNLSQNCNLTDKTLELI----SGLTGLVSLNVSNSRITSAGLRHLKP-LKNLRSLTLES 381 (406)
Q Consensus 310 ~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~l~l~~ 381 (406)
.+.+.....+. .+|+|++|+|+.| .+.+.....+ ..+++|+.|++++|.+++...+.+.. + ...+++++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCS
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecC
Confidence 87765444433 4678888888877 6776554443 34678888888888887776666643 2 34577777
Q ss_pred CC
Q 015457 382 CK 383 (406)
Q Consensus 382 ~~ 383 (406)
++
T Consensus 340 ~~ 341 (362)
T 2ra8_A 340 SQ 341 (362)
T ss_dssp BC
T ss_pred Cc
Confidence 66
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=1.4e-11 Score=95.96 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=60.2
Q ss_pred CcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccC
Q 015457 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332 (406)
Q Consensus 253 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 332 (406)
.+.++++++.++..+. .+ .++|+.|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3566666666655321 11 25566666666666655555555666666666666666655444455566666666666
Q ss_pred CCCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457 333 NCNLTDKTLELISGLTGLVSLNVSNSRIT 361 (406)
Q Consensus 333 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 361 (406)
| .+....+..+..+++|+.|++++|++.
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6 455444444555566666666666543
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.14 E-value=8.6e-11 Score=90.01 Aligned_cols=87 Identities=16% Similarity=0.283 Sum_probs=54.9
Q ss_pred CCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCC-CChHHHHhhhcC----CCCCEEeccCCCCCChhHHHHHHcCCCc
Q 015457 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDL----SSLTLLNLSQNCNLTDKTLELISGLTGL 350 (406)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~l~~~~~L 350 (406)
.|+.|++++|.+++.+...+..+++|++|++++|. +++.+...+... ++|+.|++++|..+++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666666666555555666666666666663 666655555542 4567777777666666666666666777
Q ss_pred cEEEeeCCc-cCh
Q 015457 351 VSLNVSNSR-ITS 362 (406)
Q Consensus 351 ~~L~l~~~~-~~~ 362 (406)
+.|++++|+ +++
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 777777765 444
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.12 E-value=1.6e-10 Score=102.72 Aligned_cols=303 Identities=14% Similarity=0.120 Sum_probs=174.9
Q ss_pred HhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCC
Q 015457 30 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 109 (406)
Q Consensus 30 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 109 (406)
+....+|+.+.+... ....+..+|.+|.+|+.+++... ++......+..+ +|+.+.+..+ +......+|..+ +|
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 455667888877652 22333456777888888888642 444555566665 5666665432 222333344443 67
Q ss_pred CEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccch------------hHHhhhcC
Q 015457 110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD------------ECLVHLKG 177 (406)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~ 177 (406)
+.+.+... +.......+.. .+++.+.+... +.......+.....++...+....... .....+..
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp SEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred ccccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 77777553 22222222332 34555555432 222333445555666666554332110 01111223
Q ss_pred CCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEE
Q 015457 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257 (406)
Q Consensus 178 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 257 (406)
...+..+.+... ........+..+..++.+.+... +.......+..+..|+.+.+..+ ++......+.++.+|+.+.
T Consensus 193 ~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 193 AKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 344555555433 22233344555677777777543 33344455667788888887654 4444455566778888888
Q ss_pred CCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCC
Q 015457 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 337 (406)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 337 (406)
+... +...+..++..+.+|+.+.+.++.++.....+|..|.+|+++.+..+ ++..+...|..|.+|+.+.+..+ +.
T Consensus 270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~--v~ 345 (379)
T 4h09_A 270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS--IT 345 (379)
T ss_dssp ECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT--CC
T ss_pred cccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc--cC
Confidence 7653 44444466777888888888887777766777888888888888653 55555667888888888888654 55
Q ss_pred hhHHHHHHcCC
Q 015457 338 DKTLELISGLT 348 (406)
Q Consensus 338 ~~~~~~l~~~~ 348 (406)
......+.++.
T Consensus 346 ~I~~~aF~~c~ 356 (379)
T 4h09_A 346 LIESGAFEGSS 356 (379)
T ss_dssp EECTTTTTTSS
T ss_pred EEchhHhhCCC
Confidence 54455555553
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=2.2e-11 Score=95.24 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=66.9
Q ss_pred cEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCC
Q 015457 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333 (406)
Q Consensus 254 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 333 (406)
+.++++++.++..+. .+ .++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 566777776665432 11 256777777777776665666666777777777777776654444566677777777776
Q ss_pred CCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457 334 CNLTDKTLELISGLTGLVSLNVSNSRIT 361 (406)
Q Consensus 334 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 361 (406)
.+....+..+..+++|+.|++++|++.
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555554444666667777777777654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.10 E-value=1.1e-09 Score=95.62 Aligned_cols=178 Identities=20% Similarity=0.263 Sum_probs=121.1
Q ss_pred hcCCCCCCeEEccCCCCC---------hhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHH
Q 015457 175 LKGLTNLESLNLDSCGIG---------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245 (406)
Q Consensus 175 ~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 245 (406)
...+++|+.|.+.+.... ......+..+|.|+.|.+.++.-... . .+ ..++|+.|++..+.++.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l-~-~~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI-G-KK-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC-C-SC-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee-c-cc-cCCCCcEEEEecCCCChHHHH
Confidence 445688999988654221 11234456788999999987631111 1 12 268999999988888876666
Q ss_pred Hhh--CCCCCcEEECCC--CC------CChHHHHHH--hcCCCCCEEEccCCCCChhHHHHhh---cCCCCCEEEccCCC
Q 015457 246 KLA--GLSSLKSLNLDA--RQ------ITDTGLAAL--TSLTGLTHLDLFGARITDSGAAYLR---NFKNLRSLEICGGG 310 (406)
Q Consensus 246 ~l~--~~~~L~~L~l~~--~~------~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 310 (406)
.+. .+|+|+.|.++. +. +.... ..+ ..+++|+.|.+.+|.+.+.....+. .+++|++|+++.|.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 665 689999998742 11 11110 111 2478999999999988765544443 47889999999999
Q ss_pred CChHHHHhh----hcCCCCCEEeccCCCCCChhHHHHHHc-CCCccEEEeeCCc
Q 015457 311 LTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNSR 359 (406)
Q Consensus 311 ~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~ 359 (406)
+.+.+...+ ..+++|+.|++++| .+.+.....+.. + ...+++++++
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 888765444 45689999999988 688777777764 3 4567888776
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.08 E-value=3.4e-10 Score=100.70 Aligned_cols=306 Identities=14% Similarity=0.092 Sum_probs=182.1
Q ss_pred ccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCC
Q 015457 52 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 131 (406)
Q Consensus 52 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 131 (406)
+++....+|+.+.+.. .++......|.+|.+|+.+.+..+ +......+|.++ +|+.+.+..+ +.......+.. .
T Consensus 40 ~~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~ 113 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-T 113 (379)
T ss_dssp TTGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-C
T ss_pred cccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-C
Confidence 3455677899999974 466666778889999999999644 454555667776 5777776543 33333334443 4
Q ss_pred CCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhh------------hHhh
Q 015457 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG------------LVNL 199 (406)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------~~~~ 199 (406)
+|+.+.+... +.......|... .++...+..+ +.......+..+..++.+.+......... ...+
T Consensus 114 ~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 114 DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 7888888754 222333344433 4555555432 22223344566677777776544221110 1112
Q ss_pred hCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCE
Q 015457 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279 (406)
Q Consensus 200 ~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 279 (406)
.....+..+.+.... .......+..+.+++.+.+... +.......+.++..|+.+.+..+ ++..+..++..+.+|+.
T Consensus 191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 223444555444322 1222334455677777777543 33333445566778888887654 44444456667777888
Q ss_pred EEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCc
Q 015457 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359 (406)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 359 (406)
+.+..+ +.......+..+++|+++.+.++.++..+...|..|.+|+.+.+.++ +.......+.+|.+|+.+.+..+
T Consensus 268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~- 343 (379)
T 4h09_A 268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS- 343 (379)
T ss_dssp EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc-
Confidence 877543 44445556777788888888777777666667777888888888654 55555566777777877777543
Q ss_pred cChhHHHhcCCCCC
Q 015457 360 ITSAGLRHLKPLKN 373 (406)
Q Consensus 360 ~~~~~~~~l~~~~~ 373 (406)
++.+...+|.++..
T Consensus 344 v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 344 ITLIESGAFEGSSI 357 (379)
T ss_dssp CCEECTTTTTTSSC
T ss_pred cCEEchhHhhCCCC
Confidence 45444556655543
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=3.6e-10 Score=87.99 Aligned_cols=85 Identities=25% Similarity=0.202 Sum_probs=45.8
Q ss_pred CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457 83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162 (406)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (406)
++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45555555555555444444555555555555555555544444455555555555555555444444555555555555
Q ss_pred cCCcc
Q 015457 163 GFNEI 167 (406)
Q Consensus 163 ~~~~~ 167 (406)
++|.+
T Consensus 110 ~~N~~ 114 (170)
T 3g39_A 110 LNNPW 114 (170)
T ss_dssp CSSCB
T ss_pred CCCCC
Confidence 55544
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=6.5e-10 Score=86.82 Aligned_cols=85 Identities=22% Similarity=0.193 Sum_probs=41.2
Q ss_pred CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457 83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162 (406)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (406)
++|++|++++|.+....+..+.++++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 44555555555554444444455555555555555554443333444555555555555544433333444455555555
Q ss_pred cCCcc
Q 015457 163 GFNEI 167 (406)
Q Consensus 163 ~~~~~ 167 (406)
++|.+
T Consensus 113 ~~N~~ 117 (174)
T 2r9u_A 113 YNNPW 117 (174)
T ss_dssp CSSCB
T ss_pred CCCCc
Confidence 54443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.98 E-value=9e-09 Score=81.12 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=59.1
Q ss_pred HHHhhCCCCCcEEECCCC-CCChHHHHH----HhcCCCCCEEEccCCCCChhHHHH----hhcCCCCCEEEccCCCCChH
Q 015457 244 LRKLAGLSSLKSLNLDAR-QITDTGLAA----LTSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDA 314 (406)
Q Consensus 244 ~~~l~~~~~L~~L~l~~~-~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~ 314 (406)
...+...+.|++|++++| .+...+... +...+.|++|++++|.+.+.+... +...++|++|++++|.+.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 334445666666666666 665543322 233455556666655555433222 22334455555555555444
Q ss_pred HHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEe--eCCccChhHHH----hcCCCCCccEEEccCCCCChh
Q 015457 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV--SNSRITSAGLR----HLKPLKNLRSLTLESCKVTAN 387 (406)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l--~~~~~~~~~~~----~l~~~~~L~~l~l~~~~~~~~ 387 (406)
+...+ ...+...++|++|++ ++|.+++.... .+...++|++|++++|.+...
T Consensus 109 g~~~l---------------------~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 109 GILAL---------------------VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHH---------------------HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHH---------------------HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 32222 112223345555555 45555543322 223445566666666665544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.97 E-value=1.4e-08 Score=79.99 Aligned_cols=115 Identities=20% Similarity=0.154 Sum_probs=85.5
Q ss_pred hHHhhcCCCCCcEEeccCC-CCChhHHH----HhhCCCCCcEEECCCCCCChHHHH----HHhcCCCCCEEEccCCCCCh
Q 015457 219 GLRHLSGLTNLESINLSFT-GISDGSLR----KLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITD 289 (406)
Q Consensus 219 ~~~~l~~~~~L~~L~l~~~-~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~ 289 (406)
....+...++|+.|++++| .+.+.... .+...++|++|++++|.+...+.. .+...+.|++|++++|.+++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3456678899999999999 99876443 445679999999999999986543 34456899999999999998
Q ss_pred hHHHH----hhcCCCCCEEEc--cCCCCChHHHHhh----hcCCCCCEEeccCC
Q 015457 290 SGAAY----LRNFKNLRSLEI--CGGGLTDAGVKHI----KDLSSLTLLNLSQN 333 (406)
Q Consensus 290 ~~~~~----~~~~~~L~~L~l--~~~~~~~~~~~~~----~~~~~L~~L~l~~~ 333 (406)
.+... +...++|++|++ ++|.+.+.+...+ ...++|+.|++++|
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 65443 455677888888 7777777654433 33466666666666
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=2e-09 Score=94.48 Aligned_cols=102 Identities=25% Similarity=0.275 Sum_probs=54.9
Q ss_pred EECCCC-CCChHHHHHHhcCCCCCEEEccC-CCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCC
Q 015457 256 LNLDAR-QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333 (406)
Q Consensus 256 L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 333 (406)
++.+++ .++..+. +..+++|+.|++++ |.+....+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 5555432 55555566666664 5655554455555666666666666665554555555566666666665
Q ss_pred CCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457 334 CNLTDKTLELISGLTGLVSLNVSNSRIT 361 (406)
Q Consensus 334 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 361 (406)
.+....+..+..++ |+.|++.+|++.
T Consensus 91 -~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 -ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 44443333333333 555555555543
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=1.4e-08 Score=89.02 Aligned_cols=89 Identities=24% Similarity=0.241 Sum_probs=46.8
Q ss_pred ccCCCCccEEEecc-CccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCc
Q 015457 79 LSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157 (406)
Q Consensus 79 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 157 (406)
+..+++|++|++++ |.+....+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44455555555553 555544444555555555555555555555455555555555555555555544333343333 5
Q ss_pred cEEEecCCccc
Q 015457 158 KVLNLGFNEIT 168 (406)
Q Consensus 158 ~~L~l~~~~~~ 168 (406)
+.|++.+|.+.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 55555555443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=8.7e-07 Score=73.30 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=16.1
Q ss_pred CCCCCEEEccCCCCChHH--HHhhhcCCCCCEEeccCC
Q 015457 298 FKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQN 333 (406)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~ 333 (406)
+++|++|++++|.+.+.. +..+..+++|+.|+|++|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 444555555554444421 122334455555555554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=1.1e-06 Score=72.81 Aligned_cols=83 Identities=24% Similarity=0.347 Sum_probs=63.6
Q ss_pred hcCCCCCEEeccCCCCCCh--hHHHHHHcCCCccEEEeeCCccChh-HHHhcCCCCCccEEEccCCCCCh-----hhHHH
Q 015457 320 KDLSSLTLLNLSQNCNLTD--KTLELISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTA-----NDIKR 391 (406)
Q Consensus 320 ~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~l~l~~~~~~~-----~~~~~ 391 (406)
..+|+|+.|+|++| .+.. ..+..+..+++|+.|++++|.+.+. ....+..+ +|++|++++|++.. .....
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 46899999999999 7776 3346677899999999999999875 22334444 99999999999985 23444
Q ss_pred HhhcCCCCccccC
Q 015457 392 LQSRDLPNLVSFR 404 (406)
Q Consensus 392 ~~~~~~~~l~~l~ 404 (406)
.....+|+|+.|.
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 4456889998774
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.06 E-value=0.0001 Score=57.60 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=41.6
Q ss_pred hCCCCCcEEECCCC-CCChHHH----HHHhcCCCCCEEEccCCCCChhHHH----HhhcCCCCCEEEccCCCCChHHHHh
Q 015457 248 AGLSSLKSLNLDAR-QITDTGL----AALTSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKH 318 (406)
Q Consensus 248 ~~~~~L~~L~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~ 318 (406)
.+-+.|++|+++++ .+...+. ..+..-..|+.|++++|.+.+.+.. .+..-+.|++|+|++|.+.+.+...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455555555553 4544332 2223334555555555555543322 2334455566666665555554443
Q ss_pred h----hcCCCCCEEeccCC
Q 015457 319 I----KDLSSLTLLNLSQN 333 (406)
Q Consensus 319 ~----~~~~~L~~L~l~~~ 333 (406)
+ .....|+.|+|++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 3 22345556665544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.97 E-value=0.0002 Score=55.86 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=89.1
Q ss_pred HHHhcCCCCCEEEccCC-CCChhHHH----HhhcCCCCCEEEccCCCCChHHHHhhh----cCCCCCEEeccCCCCCChh
Q 015457 269 AALTSLTGLTHLDLFGA-RITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKHIK----DLSSLTLLNLSQNCNLTDK 339 (406)
Q Consensus 269 ~~~~~~~~L~~L~l~~~-~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~ 339 (406)
..+..-+.|++|+++++ .+.+.+.. .+..-..|++|++++|.+.+.+...++ ....|+.|+|+.| .+...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~ 113 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPE 113 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHH
Confidence 34456688999999986 88875543 456678999999999999988766554 5689999999999 78887
Q ss_pred HHHHHH----cCCCccEEEeeCC---ccChhH----HHhcCCCCCccEEEccCCCCCh
Q 015457 340 TLELIS----GLTGLVSLNVSNS---RITSAG----LRHLKPLKNLRSLTLESCKVTA 386 (406)
Q Consensus 340 ~~~~l~----~~~~L~~L~l~~~---~~~~~~----~~~l~~~~~L~~l~l~~~~~~~ 386 (406)
....++ .-+.|+.|+++++ .+.... .+++..-++|+.++++.+.+..
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 665544 4467999999865 556543 3455667899999999886544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.55 E-value=0.017 Score=41.80 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=35.6
Q ss_pred EEEccCCCCC--hHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457 303 SLEICGGGLT--DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361 (406)
Q Consensus 303 ~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 361 (406)
.++-+++.++ .. +..+ .++|+.|+|++| .+.......+..+++|+.|++.+|++.
T Consensus 12 ~v~Cs~~~L~~~~v-P~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASL-PTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTS-CSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccC-CCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 32 2222 246888888888 677766667777778888888877753
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.42 E-value=0.021 Score=41.38 Aligned_cols=56 Identities=20% Similarity=0.080 Sum_probs=42.4
Q ss_pred CEEEccCCCCC--hhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCC
Q 015457 278 THLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336 (406)
Q Consensus 278 ~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 336 (406)
..++.++..++ .. |.. -.++|+.|+|++|.++......|..+++|+.|+|.+|+..
T Consensus 11 ~~v~Cs~~~L~~~~v-P~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASL-PTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTS-CSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccC-CCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777776 33 221 2457999999999999887777888999999999999654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.92 E-value=0.75 Score=31.23 Aligned_cols=45 Identities=16% Similarity=0.040 Sum_probs=30.6
Q ss_pred CCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecC
Q 015457 22 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67 (406)
Q Consensus 22 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 67 (406)
++.+....|.+|.+|+.+.|...- ...+..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 344445567788888888887632 333445678888888888865
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.98 E-value=8.3 Score=25.96 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=27.1
Q ss_pred cccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccC
Q 015457 51 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 93 (406)
Q Consensus 51 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 93 (406)
..+|..|.+|+.+.|.. .++......|..|.+|+.+.+...
T Consensus 13 ~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred HHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 34567777777777764 355555666777777777777643
Done!