Query 015462
Match_columns 406
No_of_seqs 507 out of 2845
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:32:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02964 phosphatidylserine de 100.0 4.7E-88 1E-92 698.3 16.1 404 1-406 1-407 (644)
2 KOG2419 Phosphatidylserine dec 100.0 9.3E-63 2E-67 488.4 10.0 397 1-405 206-738 (975)
3 KOG1030 Predicted Ca2+-depende 99.7 5.1E-17 1.1E-21 140.6 9.1 90 51-141 3-98 (168)
4 KOG0027 Calmodulin and related 99.7 4.5E-17 9.8E-22 142.7 7.9 132 143-287 7-148 (151)
5 COG5126 FRQ1 Ca2+-binding prot 99.7 1.1E-16 2.3E-21 139.3 7.7 133 136-280 12-150 (160)
6 cd04039 C2_PSD C2 domain prese 99.6 1.7E-15 3.8E-20 125.1 9.9 90 54-143 1-101 (108)
7 cd04016 C2_Tollip C2 domain pr 99.6 2.8E-15 6.1E-20 126.2 10.3 98 53-153 1-105 (121)
8 cd08375 C2_Intersectin C2 doma 99.6 1.4E-14 3.1E-19 124.6 10.3 87 53-139 14-106 (136)
9 cd08677 C2A_Synaptotagmin-13 C 99.6 1.2E-14 2.6E-19 121.0 8.7 88 50-137 10-106 (118)
10 cd04041 C2A_fungal C2 domain f 99.5 8E-14 1.7E-18 115.6 9.9 88 54-141 1-101 (111)
11 cd08682 C2_Rab11-FIP_classI C2 99.5 6.6E-14 1.4E-18 118.7 8.8 98 56-153 1-109 (126)
12 cd08379 C2D_MCTP_PRT_plant C2 99.5 8.5E-14 1.8E-18 118.0 9.1 98 55-155 1-113 (126)
13 cd04032 C2_Perforin C2 domain 99.5 1.6E-13 3.4E-18 116.5 10.1 94 45-138 19-118 (127)
14 cd04038 C2_ArfGAP C2 domain pr 99.5 1.6E-13 3.4E-18 119.3 9.4 90 53-143 1-95 (145)
15 cd08688 C2_KIAA0528-like C2 do 99.5 1.6E-13 3.4E-18 113.7 8.9 99 56-154 1-110 (110)
16 cd08395 C2C_Munc13 C2 domain t 99.5 3.2E-13 6.8E-18 113.5 9.8 88 55-142 1-103 (120)
17 KOG0028 Ca2+-binding protein ( 99.5 1.7E-13 3.6E-18 117.0 7.5 135 140-287 29-169 (172)
18 cd04050 C2B_Synaptotagmin-like 99.4 4.8E-13 1E-17 109.8 9.3 94 56-152 2-101 (105)
19 cd04024 C2A_Synaptotagmin-like 99.4 6.6E-13 1.4E-17 112.5 10.1 101 54-154 1-110 (128)
20 cd08681 C2_fungal_Inn1p-like C 99.4 4.7E-13 1E-17 112.0 8.9 87 54-141 1-94 (118)
21 cd04042 C2A_MCTP_PRT C2 domain 99.4 5.7E-13 1.2E-17 112.1 9.3 99 55-156 1-106 (121)
22 cd04011 C2B_Ferlin C2 domain s 99.4 6.8E-13 1.5E-17 110.0 8.9 101 53-153 3-110 (111)
23 cd04019 C2C_MCTP_PRT_plant C2 99.4 1.1E-12 2.4E-17 114.7 10.3 101 55-155 1-110 (150)
24 cd08391 C2A_C2C_Synaptotagmin_ 99.4 9.9E-13 2.1E-17 110.3 9.5 103 54-160 1-115 (121)
25 cd08376 C2B_MCTP_PRT C2 domain 99.4 9.9E-13 2.1E-17 109.7 9.4 86 55-140 1-92 (116)
26 cd08381 C2B_PI3K_class_II C2 d 99.4 8.1E-13 1.8E-17 111.6 8.7 88 53-140 12-112 (122)
27 cd08378 C2B_MCTP_PRT_plant C2 99.4 8.3E-13 1.8E-17 111.3 8.6 100 56-156 2-106 (121)
28 cd04028 C2B_RIM1alpha C2 domai 99.4 1.7E-12 3.7E-17 112.7 10.1 90 47-137 22-124 (146)
29 cd04045 C2C_Tricalbin-like C2 99.4 2.7E-12 5.9E-17 108.0 9.9 98 54-155 1-105 (120)
30 cd04044 C2A_Tricalbin-like C2 99.4 3E-12 6.4E-17 107.8 10.1 90 53-143 1-99 (124)
31 cd04025 C2B_RasA1_RasA4 C2 dom 99.4 2.8E-12 6E-17 108.2 9.8 86 55-140 1-92 (123)
32 cd04022 C2A_MCTP_PRT_plant C2 99.4 1.8E-12 3.9E-17 110.1 8.2 98 55-153 1-108 (127)
33 cd04029 C2A_SLP-4_5 C2 domain 99.4 2.4E-12 5.3E-17 109.1 8.8 91 50-140 11-115 (125)
34 cd08377 C2C_MCTP_PRT C2 domain 99.4 3.3E-12 7.3E-17 106.8 9.5 99 54-157 1-105 (119)
35 cd04036 C2_cPLA2 C2 domain pre 99.3 3.5E-12 7.7E-17 107.0 9.0 85 56-141 2-95 (119)
36 cd04018 C2C_Ferlin C2 domain t 99.3 3.3E-12 7.2E-17 111.6 9.0 86 56-141 2-108 (151)
37 cd08394 C2A_Munc13 C2 domain f 99.3 7E-12 1.5E-16 105.5 10.1 96 53-151 1-99 (127)
38 cd08392 C2A_SLP-3 C2 domain fi 99.3 3.2E-12 7E-17 108.8 8.1 89 50-138 11-113 (128)
39 cd08393 C2A_SLP-1_2 C2 domain 99.3 2.4E-12 5.1E-17 109.2 7.2 88 51-138 12-113 (125)
40 cd08387 C2A_Synaptotagmin-8 C2 99.3 4.9E-12 1.1E-16 106.9 8.6 94 48-141 10-114 (124)
41 cd04046 C2_Calpain C2 domain p 99.3 7.3E-12 1.6E-16 106.3 9.7 83 53-137 2-90 (126)
42 cd04009 C2B_Munc13-like C2 dom 99.3 7.1E-12 1.5E-16 107.4 9.2 91 51-141 13-120 (133)
43 cd04049 C2_putative_Elicitor-r 99.3 8.9E-12 1.9E-16 105.3 9.3 89 54-142 1-99 (124)
44 cd08678 C2_C21orf25-like C2 do 99.3 9E-12 2E-16 105.7 9.1 87 56-143 1-93 (126)
45 PTZ00183 centrin; Provisional 99.3 5.8E-12 1.2E-16 110.2 7.9 131 139-280 12-148 (158)
46 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.3 9.4E-12 2E-16 110.3 9.1 90 50-139 23-126 (162)
47 cd08686 C2_ABR C2 domain in th 99.3 9.1E-12 2E-16 103.5 8.1 78 56-135 1-91 (118)
48 cd08680 C2_Kibra C2 domain fou 99.3 9.6E-12 2.1E-16 105.2 8.4 88 50-137 10-111 (124)
49 cd04037 C2E_Ferlin C2 domain f 99.3 1.1E-11 2.3E-16 105.0 8.6 84 55-138 1-92 (124)
50 cd08382 C2_Smurf-like C2 domai 99.3 1.5E-11 3.2E-16 103.9 9.4 84 56-141 2-94 (123)
51 cd08385 C2A_Synaptotagmin-1-5- 99.3 1.5E-11 3.2E-16 103.8 9.3 91 50-140 12-113 (124)
52 cd08388 C2A_Synaptotagmin-4-11 99.3 1.1E-11 2.4E-16 105.5 8.4 89 51-139 13-114 (128)
53 cd04054 C2A_Rasal1_RasA4 C2 do 99.3 1.9E-11 4.1E-16 102.9 9.5 83 56-139 2-91 (121)
54 cd04010 C2B_RasA3 C2 domain se 99.3 9.2E-12 2E-16 108.5 7.7 86 55-140 1-110 (148)
55 cd08407 C2B_Synaptotagmin-13 C 99.3 1.6E-11 3.5E-16 105.7 8.9 85 50-136 11-112 (138)
56 cd08406 C2B_Synaptotagmin-12 C 99.3 1.1E-11 2.4E-16 106.6 7.7 86 50-135 11-109 (136)
57 cd04033 C2_NEDD4_NEDD4L C2 dom 99.3 2.4E-11 5.2E-16 103.8 9.7 105 55-160 1-122 (133)
58 cd08401 C2A_RasA2_RasA3 C2 dom 99.3 2.2E-11 4.7E-16 102.7 9.3 84 56-140 2-93 (121)
59 cd04021 C2_E3_ubiquitin_ligase 99.3 2.4E-11 5.2E-16 103.0 9.6 86 55-142 3-94 (125)
60 cd04015 C2_plant_PLD C2 domain 99.3 2.7E-11 5.9E-16 106.9 10.1 86 68-157 57-143 (158)
61 cd04031 C2A_RIM1alpha C2 domai 99.3 2.2E-11 4.8E-16 102.8 8.6 88 50-137 12-113 (125)
62 cd08685 C2_RGS-like C2 domain 99.3 1.7E-11 3.7E-16 103.0 7.8 90 52-141 10-111 (119)
63 cd04051 C2_SRC2_like C2 domain 99.2 2E-11 4.4E-16 103.1 8.2 101 55-155 1-116 (125)
64 cd08384 C2B_Rabphilin_Doc2 C2 99.2 2E-11 4.4E-16 104.4 8.2 87 50-136 9-108 (133)
65 KOG0037 Ca2+-binding protein, 99.2 5.6E-12 1.2E-16 113.3 4.6 139 146-301 60-207 (221)
66 cd04014 C2_PKC_epsilon C2 doma 99.2 5.1E-11 1.1E-15 101.8 9.8 87 52-140 2-105 (132)
67 cd08386 C2A_Synaptotagmin-7 C2 99.2 3.7E-11 8.1E-16 101.5 8.8 89 51-139 13-113 (125)
68 cd04030 C2C_KIAA1228 C2 domain 99.2 4.3E-11 9.4E-16 101.3 9.1 90 51-140 13-117 (127)
69 cd08400 C2_Ras_p21A1 C2 domain 99.2 7.6E-11 1.6E-15 100.1 10.4 95 53-152 3-103 (126)
70 PTZ00184 calmodulin; Provision 99.2 2.3E-11 5E-16 105.0 7.3 129 141-280 8-142 (149)
71 cd04017 C2D_Ferlin C2 domain f 99.2 7E-11 1.5E-15 101.5 10.0 79 55-133 2-95 (135)
72 cd04043 C2_Munc13_fungal C2 do 99.2 7.6E-11 1.6E-15 99.7 9.4 84 55-138 2-94 (126)
73 cd08676 C2A_Munc13-like C2 dom 99.2 6.6E-11 1.4E-15 103.6 9.2 86 49-138 23-143 (153)
74 cd08373 C2A_Ferlin C2 domain f 99.2 6.3E-11 1.4E-15 100.5 8.8 89 65-155 11-101 (127)
75 cd04027 C2B_Munc13 C2 domain s 99.2 8.7E-11 1.9E-15 99.8 9.6 82 55-137 2-100 (127)
76 COG5126 FRQ1 Ca2+-binding prot 99.2 3.5E-11 7.6E-16 104.9 6.9 94 146-243 59-156 (160)
77 cd08675 C2B_RasGAP C2 domain s 99.2 8.2E-11 1.8E-15 101.4 8.7 98 56-155 1-122 (137)
78 cd08389 C2A_Synaptotagmin-14_1 99.2 7.2E-11 1.6E-15 99.9 8.2 89 50-139 12-112 (124)
79 cd08402 C2B_Synaptotagmin-1 C2 99.2 6.4E-11 1.4E-15 101.8 7.7 87 50-136 11-110 (136)
80 cd04040 C2D_Tricalbin-like C2 99.2 1.3E-10 2.8E-15 96.7 9.4 85 56-140 1-92 (115)
81 cd04052 C2B_Tricalbin-like C2 99.2 6.1E-11 1.3E-15 98.3 7.0 93 65-160 9-102 (111)
82 cd08521 C2A_SLP C2 domain firs 99.2 1.6E-10 3.5E-15 97.2 9.4 89 50-138 10-112 (123)
83 PLN03200 cellulose synthase-in 99.2 5.6E-11 1.2E-15 136.5 8.7 107 50-159 1976-2089(2102)
84 cd08690 C2_Freud-1 C2 domain f 99.2 1.6E-10 3.4E-15 101.3 9.6 86 66-153 22-121 (155)
85 cd08410 C2B_Synaptotagmin-17 C 99.2 7.2E-11 1.6E-15 101.4 7.3 84 51-134 11-107 (135)
86 cd08408 C2B_Synaptotagmin-14_1 99.2 7.3E-11 1.6E-15 101.8 7.3 87 50-136 11-111 (138)
87 cd08403 C2B_Synaptotagmin-3-5- 99.1 1.1E-10 2.4E-15 100.0 7.8 86 50-135 10-108 (134)
88 cd08405 C2B_Synaptotagmin-7 C2 99.1 1.5E-10 3.2E-15 99.5 8.6 88 50-137 11-111 (136)
89 cd08390 C2A_Synaptotagmin-15-1 99.1 2.2E-10 4.8E-15 96.4 9.4 93 50-142 10-114 (123)
90 KOG0030 Myosin essential light 99.1 5.9E-11 1.3E-15 99.2 5.6 130 139-280 6-145 (152)
91 cd08404 C2B_Synaptotagmin-4 C2 99.1 2E-10 4.4E-15 98.6 8.8 85 52-136 13-110 (136)
92 cd04048 C2A_Copine C2 domain f 99.1 2E-10 4.3E-15 96.5 8.5 76 66-141 18-104 (120)
93 KOG0027 Calmodulin and related 99.1 2.3E-10 5E-15 100.2 8.5 98 146-243 47-149 (151)
94 cd08691 C2_NEDL1-like C2 domai 99.1 4.9E-10 1.1E-14 96.4 9.6 87 55-143 2-110 (137)
95 cd04026 C2_PKC_alpha_gamma C2 99.1 3.9E-10 8.4E-15 96.1 8.7 99 53-154 12-122 (131)
96 cd08692 C2B_Tac2-N C2 domain s 99.1 4E-10 8.6E-15 96.2 8.3 89 48-136 8-109 (135)
97 cd08409 C2B_Synaptotagmin-15 C 99.1 3.6E-10 7.9E-15 97.3 7.7 87 50-136 11-109 (137)
98 cd04035 C2A_Rabphilin_Doc2 C2 99.1 9.2E-10 2E-14 92.8 9.3 91 50-141 11-115 (123)
99 KOG0696 Serine/threonine prote 99.0 1.5E-10 3.3E-15 113.0 5.0 86 53-138 179-276 (683)
100 cd00276 C2B_Synaptotagmin C2 d 99.0 6.1E-10 1.3E-14 95.0 7.8 100 52-155 12-124 (134)
101 KOG0031 Myosin regulatory ligh 99.0 5.5E-10 1.2E-14 95.0 6.9 119 134-264 22-146 (171)
102 KOG0044 Ca2+ sensor (EF-Hand s 99.0 6.7E-10 1.5E-14 100.1 7.4 129 146-280 29-169 (193)
103 cd04047 C2B_Copine C2 domain s 99.0 1.1E-09 2.4E-14 90.3 7.7 72 66-138 18-99 (110)
104 PF13499 EF-hand_7: EF-hand do 99.0 1.5E-09 3.2E-14 81.0 6.6 61 181-241 2-66 (66)
105 PRK00723 phosphatidylserine de 98.9 7.5E-11 1.6E-15 113.9 -1.6 73 325-405 2-76 (297)
106 cd00275 C2_PLC_like C2 domain 98.9 4.4E-09 9.5E-14 88.9 9.3 96 55-156 3-113 (128)
107 PTZ00183 centrin; Provisional 98.9 2.1E-09 4.6E-14 93.9 7.2 96 146-244 56-155 (158)
108 KOG0034 Ca2+/calmodulin-depend 98.9 1.1E-09 2.3E-14 98.7 5.2 135 139-280 28-169 (187)
109 PF00168 C2: C2 domain; Inter 98.9 4.7E-09 1E-13 81.4 7.2 75 56-130 1-84 (85)
110 KOG1028 Ca2+-dependent phospho 98.9 3.9E-09 8.4E-14 107.1 7.4 89 50-138 163-262 (421)
111 KOG0036 Predicted mitochondria 98.9 8.4E-09 1.8E-13 100.6 9.1 64 181-249 53-116 (463)
112 cd08383 C2A_RasGAP C2 domain ( 98.9 7.3E-09 1.6E-13 86.2 7.6 96 56-156 2-103 (117)
113 cd04013 C2_SynGAP_like C2 doma 98.9 1.5E-08 3.2E-13 87.9 9.6 103 52-158 9-118 (146)
114 PLN03008 Phospholipase D delta 98.9 4.6E-09 9.9E-14 111.7 7.7 86 66-155 74-160 (868)
115 cd05022 S-100A13 S-100A13: S-1 98.8 1.2E-08 2.7E-13 80.9 7.9 65 180-244 9-76 (89)
116 PTZ00184 calmodulin; Provision 98.8 1.4E-08 3.1E-13 87.4 8.1 94 146-242 50-147 (149)
117 KOG0028 Ca2+-binding protein ( 98.8 1.8E-08 3.8E-13 86.5 7.4 94 146-243 72-170 (172)
118 KOG0044 Ca2+ sensor (EF-Hand s 98.8 7.7E-09 1.7E-13 93.3 5.4 99 146-245 67-177 (193)
119 cd08374 C2F_Ferlin C2 domain s 98.7 4.8E-08 1E-12 83.3 8.2 86 56-141 2-125 (133)
120 KOG0034 Ca2+/calmodulin-depend 98.7 4.2E-08 9.1E-13 88.4 8.1 99 146-244 69-176 (187)
121 cd05027 S-100B S-100B: S-100B 98.7 6.2E-08 1.4E-12 76.8 7.6 64 181-244 10-80 (88)
122 KOG0037 Ca2+-binding protein, 98.7 7.3E-08 1.6E-12 87.0 8.4 117 146-280 97-214 (221)
123 smart00239 C2 Protein kinase C 98.7 1.7E-07 3.7E-12 74.3 9.3 85 56-140 2-95 (101)
124 PF13833 EF-hand_8: EF-hand do 98.6 1.1E-07 2.4E-12 68.0 6.4 52 192-243 1-53 (54)
125 cd05031 S-100A10_like S-100A10 98.6 1.5E-07 3.3E-12 75.5 7.3 64 181-244 10-80 (94)
126 cd05026 S-100Z S-100Z: S-100Z 98.6 3E-07 6.5E-12 73.7 8.4 64 181-244 12-82 (93)
127 cd05029 S-100A6 S-100A6: S-100 98.6 3.2E-07 7E-12 72.7 8.2 64 181-244 12-80 (88)
128 smart00027 EH Eps15 homology d 98.5 3.7E-07 8.1E-12 73.5 8.5 66 177-244 8-73 (96)
129 cd00051 EFh EF-hand, calcium b 98.5 2.4E-07 5.3E-12 66.6 6.7 61 181-241 2-62 (63)
130 cd00052 EH Eps15 homology doma 98.5 2.5E-07 5.5E-12 68.8 6.9 61 182-244 2-62 (67)
131 COG5038 Ca2+-dependent lipid-b 98.5 1.7E-07 3.6E-12 101.8 8.0 94 48-141 1034-1134(1227)
132 KOG4223 Reticulocalbin, calume 98.5 9E-08 1.9E-12 91.1 5.2 139 138-283 70-225 (325)
133 cd05025 S-100A1 S-100A1: S-100 98.5 4.9E-07 1.1E-11 72.2 8.3 65 180-244 10-81 (92)
134 cd00030 C2 C2 domain. The C2 d 98.5 5.8E-07 1.3E-11 70.7 8.7 83 56-138 1-90 (102)
135 cd00213 S-100 S-100: S-100 dom 98.4 7.8E-07 1.7E-11 70.4 7.7 65 180-244 9-80 (88)
136 KOG0038 Ca2+-binding kinase in 98.4 1.2E-07 2.6E-12 80.0 2.2 117 173-292 65-183 (189)
137 KOG1031 Predicted Ca2+-depende 98.4 3E-07 6.4E-12 92.9 5.1 103 53-155 2-122 (1169)
138 cd05023 S-100A11 S-100A11: S-1 98.4 1.8E-06 3.8E-11 68.6 8.4 64 181-244 11-81 (89)
139 KOG0036 Predicted mitochondria 98.4 1.4E-06 2.9E-11 85.4 8.9 183 146-355 54-247 (463)
140 PLN02223 phosphoinositide phos 98.4 1.4E-06 3E-11 89.5 9.3 87 52-138 407-509 (537)
141 COG5038 Ca2+-dependent lipid-b 98.3 1.1E-06 2.3E-11 95.7 8.0 89 51-140 433-530 (1227)
142 KOG1028 Ca2+-dependent phospho 98.3 1.2E-06 2.6E-11 89.0 7.9 85 50-136 294-393 (421)
143 PF13499 EF-hand_7: EF-hand do 98.3 6.7E-07 1.5E-11 66.5 4.3 60 146-205 3-66 (66)
144 cd00252 SPARC_EC SPARC_EC; ext 98.3 1.8E-06 3.9E-11 72.0 7.2 58 180-241 49-106 (116)
145 PLN02952 phosphoinositide phos 98.3 3.4E-06 7.5E-11 88.2 9.6 87 52-138 468-571 (599)
146 PF00036 EF-hand_1: EF hand; 98.2 1.2E-06 2.7E-11 54.3 3.0 28 216-243 1-28 (29)
147 KOG4223 Reticulocalbin, calume 98.2 1.1E-06 2.4E-11 83.8 4.0 124 116-239 164-301 (325)
148 PLN02964 phosphatidylserine de 98.2 2.4E-06 5.3E-11 90.2 6.9 93 177-280 141-237 (644)
149 PLN02222 phosphoinositide phos 98.1 9.8E-06 2.1E-10 84.6 9.8 89 50-138 448-553 (581)
150 PLN02230 phosphoinositide phos 98.1 8.9E-06 1.9E-10 85.1 9.2 88 51-138 466-570 (598)
151 PF14658 EF-hand_9: EF-hand do 98.1 8E-06 1.7E-10 60.4 6.3 62 183-244 2-65 (66)
152 cd05030 calgranulins Calgranul 98.1 1.1E-05 2.3E-10 64.0 6.5 64 181-244 10-80 (88)
153 KOG1011 Neurotransmitter relea 98.1 4.7E-06 1E-10 85.4 5.2 84 52-137 293-394 (1283)
154 PLN02228 Phosphoinositide phos 98.0 2E-05 4.4E-10 82.1 9.4 88 51-138 428-533 (567)
155 cd05022 S-100A13 S-100A13: S-1 98.0 4.7E-06 1E-10 66.1 3.3 60 215-280 8-69 (89)
156 PF00036 EF-hand_1: EF hand; 98.0 7.8E-06 1.7E-10 50.7 3.3 28 181-208 2-29 (29)
157 KOG1328 Synaptic vesicle prote 97.9 4E-06 8.7E-11 86.9 2.6 84 55-138 948-1048(1103)
158 cd08689 C2_fungal_Pkc1p C2 dom 97.9 4.8E-05 1E-09 61.7 7.5 60 56-120 1-70 (109)
159 KOG0038 Ca2+-binding kinase in 97.9 3.6E-05 7.7E-10 65.3 6.6 97 146-245 74-179 (189)
160 PLN02270 phospholipase D alpha 97.9 4.5E-05 9.7E-10 81.8 8.8 85 68-156 46-132 (808)
161 KOG0169 Phosphoinositide-speci 97.8 3.3E-05 7.1E-10 81.3 7.2 84 55-138 617-716 (746)
162 KOG2059 Ras GTPase-activating 97.8 2.9E-05 6.3E-10 80.6 6.3 105 53-160 4-118 (800)
163 cd05027 S-100B S-100B: S-100B 97.8 3E-05 6.5E-10 61.5 4.1 59 146-208 11-80 (88)
164 PF13405 EF-hand_6: EF-hand do 97.7 3.4E-05 7.3E-10 48.5 2.9 26 217-242 2-27 (31)
165 KOG0031 Myosin regulatory ligh 97.7 0.00014 2.9E-09 62.5 7.4 66 181-247 103-168 (171)
166 PF14658 EF-hand_9: EF-hand do 97.7 5.8E-05 1.3E-09 55.9 4.4 58 147-207 2-64 (66)
167 KOG0041 Predicted Ca2+-binding 97.7 0.00011 2.3E-09 65.7 6.6 97 179-279 99-199 (244)
168 smart00027 EH Eps15 homology d 97.6 3.2E-05 6.9E-10 62.2 2.3 64 139-208 5-73 (96)
169 cd00052 EH Eps15 homology doma 97.6 7.8E-05 1.7E-09 55.1 4.3 57 146-208 2-62 (67)
170 KOG1264 Phospholipase C [Lipid 97.6 0.00028 6E-09 74.4 8.7 82 55-138 1066-1161(1267)
171 cd05031 S-100A10_like S-100A10 97.5 8.1E-05 1.8E-09 59.6 3.5 60 146-209 11-81 (94)
172 cd05026 S-100Z S-100Z: S-100Z 97.5 6.9E-05 1.5E-09 60.0 3.0 63 215-280 10-75 (93)
173 PRK12309 transaldolase/EF-hand 97.5 0.00018 4E-09 72.3 6.5 53 178-243 333-385 (391)
174 PF13202 EF-hand_5: EF hand; P 97.5 8.7E-05 1.9E-09 44.3 2.5 23 218-240 2-24 (25)
175 KOG0030 Myosin essential light 97.5 0.00026 5.5E-09 59.8 5.7 60 181-241 90-149 (152)
176 cd05025 S-100A1 S-100A1: S-100 97.4 0.0001 2.2E-09 58.8 3.1 64 214-280 8-74 (92)
177 PF13833 EF-hand_8: EF-hand do 97.4 0.0002 4.3E-09 50.9 4.2 48 157-207 2-53 (54)
178 PF14788 EF-hand_10: EF hand; 97.4 0.0004 8.8E-09 48.6 5.4 50 195-244 1-50 (51)
179 cd05029 S-100A6 S-100A6: S-100 97.4 0.00021 4.5E-09 56.6 4.0 59 146-208 13-80 (88)
180 PF13405 EF-hand_6: EF-hand do 97.4 0.00023 5.1E-09 44.6 3.3 29 181-209 2-31 (31)
181 KOG0377 Protein serine/threoni 97.3 0.00051 1.1E-08 68.1 7.1 63 181-243 549-615 (631)
182 cd00252 SPARC_EC SPARC_EC; ext 97.2 0.00025 5.3E-09 59.1 3.4 56 146-205 51-106 (116)
183 KOG2562 Protein phosphatase 2 97.2 0.00034 7.4E-09 69.9 4.9 93 149-244 284-380 (493)
184 KOG1326 Membrane-associated pr 97.2 0.00034 7.4E-09 75.4 5.0 89 49-137 608-704 (1105)
185 cd05024 S-100A10 S-100A10: A s 97.2 0.0015 3.3E-08 51.7 7.4 63 181-244 10-77 (91)
186 PF13202 EF-hand_5: EF hand; P 97.2 0.00037 8.1E-09 41.5 2.8 25 181-205 1-25 (25)
187 cd00051 EFh EF-hand, calcium b 97.1 0.00063 1.4E-08 48.3 4.3 56 146-205 3-62 (63)
188 cd00213 S-100 S-100: S-100 dom 97.1 0.00057 1.2E-08 53.8 3.7 63 215-280 8-73 (88)
189 KOG0040 Ca2+-binding actin-bun 97.0 0.00087 1.9E-08 74.7 5.3 96 146-242 2256-2360(2399)
190 PF12763 EF-hand_4: Cytoskelet 97.0 0.0023 4.9E-08 52.3 6.6 63 177-242 8-70 (104)
191 PLN02352 phospholipase D epsil 96.9 0.0032 6.9E-08 67.7 8.4 95 52-156 8-115 (758)
192 KOG0041 Predicted Ca2+-binding 96.8 0.0021 4.5E-08 57.6 5.2 99 139-241 94-201 (244)
193 KOG4251 Calcium binding protei 96.8 0.0012 2.6E-08 60.8 3.5 129 146-280 104-258 (362)
194 cd05023 S-100A11 S-100A11: S-1 96.7 0.0014 3.1E-08 51.9 3.3 63 215-280 9-74 (89)
195 cd05030 calgranulins Calgranul 96.5 0.0023 5.1E-08 50.5 3.0 62 146-208 11-80 (88)
196 KOG0377 Protein serine/threoni 96.4 0.0092 2E-07 59.4 7.3 126 146-280 467-609 (631)
197 PF10591 SPARC_Ca_bdg: Secrete 96.4 0.0013 2.8E-08 54.6 1.1 59 179-239 54-112 (113)
198 KOG2059 Ras GTPase-activating 96.2 0.035 7.5E-07 58.5 10.6 94 45-138 107-240 (800)
199 KOG2643 Ca2+ binding protein, 96.1 0.005 1.1E-07 61.3 3.5 95 148-244 323-454 (489)
200 smart00054 EFh EF-hand, calciu 96.1 0.007 1.5E-07 35.6 2.9 26 217-242 2-27 (29)
201 KOG4666 Predicted phosphate ac 96.0 0.0093 2E-07 57.3 4.8 121 146-280 262-385 (412)
202 KOG0040 Ca2+-binding actin-bun 95.8 0.026 5.6E-07 63.6 7.5 69 176-244 2250-2325(2399)
203 KOG1328 Synaptic vesicle prote 95.7 0.009 2E-07 62.8 3.9 67 83-152 180-282 (1103)
204 KOG2643 Ca2+ binding protein, 95.7 0.0062 1.3E-07 60.7 2.2 53 188-242 208-260 (489)
205 KOG0751 Mitochondrial aspartat 95.4 0.057 1.2E-06 54.7 8.0 62 181-244 76-137 (694)
206 smart00054 EFh EF-hand, calciu 95.2 0.023 4.9E-07 33.3 3.0 27 181-207 2-28 (29)
207 KOG0905 Phosphoinositide 3-kin 95.0 0.015 3.2E-07 64.2 2.7 91 45-137 1515-1621(1639)
208 KOG4065 Uncharacterized conser 95.0 0.066 1.4E-06 43.9 5.7 59 182-240 70-142 (144)
209 KOG4666 Predicted phosphate ac 94.9 0.024 5.2E-07 54.6 3.5 102 181-290 261-363 (412)
210 PF12763 EF-hand_4: Cytoskelet 94.8 0.026 5.7E-07 46.0 3.2 62 139-207 5-71 (104)
211 KOG1013 Synaptic vesicle prote 94.7 0.063 1.4E-06 51.9 5.7 81 50-132 229-324 (362)
212 KOG1326 Membrane-associated pr 94.6 0.026 5.6E-07 61.5 3.2 66 66-133 224-300 (1105)
213 cd05024 S-100A10 S-100A10: A s 94.6 0.049 1.1E-06 43.2 4.0 29 180-208 49-77 (91)
214 PRK12309 transaldolase/EF-hand 94.2 0.045 9.7E-07 55.2 3.8 48 146-207 337-385 (391)
215 KOG0046 Ca2+-binding actin-bun 94.1 0.16 3.6E-06 51.9 7.5 67 175-242 15-84 (627)
216 KOG1013 Synaptic vesicle prote 94.0 0.013 2.8E-07 56.5 -0.3 80 56-137 95-190 (362)
217 KOG4251 Calcium binding protei 93.7 0.15 3.2E-06 47.3 5.9 95 146-240 239-342 (362)
218 cd08684 C2A_Tac2-N C2 domain f 93.6 0.072 1.6E-06 41.9 3.1 79 57-137 2-92 (103)
219 KOG1011 Neurotransmitter relea 93.6 0.28 6.1E-06 51.4 8.2 107 54-160 1125-1247(1283)
220 KOG1265 Phospholipase C [Lipid 93.2 0.13 2.9E-06 55.5 5.4 91 42-137 687-794 (1189)
221 PF10591 SPARC_Ca_bdg: Secrete 93.2 0.099 2.2E-06 43.3 3.6 55 146-203 57-112 (113)
222 PLN02938 phosphatidylserine de 92.9 0.021 4.4E-07 57.9 -1.1 56 345-406 75-135 (428)
223 PF09279 EF-hand_like: Phospho 92.6 0.2 4.4E-06 38.7 4.5 62 181-243 2-69 (83)
224 KOG0751 Mitochondrial aspartat 92.6 0.15 3.2E-06 51.8 4.5 64 181-244 110-208 (694)
225 PF14788 EF-hand_10: EF hand; 92.6 0.18 3.8E-06 35.4 3.5 42 163-208 9-50 (51)
226 PTZ00403 phosphatidylserine de 91.6 0.091 2E-06 52.1 1.6 40 364-405 56-100 (353)
227 KOG2419 Phosphatidylserine dec 91.4 0.035 7.6E-07 57.7 -1.5 162 65-244 407-579 (975)
228 PF05042 Caleosin: Caleosin re 89.8 1.3 2.9E-05 39.2 7.1 31 214-244 95-125 (174)
229 KOG1327 Copine [Signal transdu 88.8 0.48 1E-05 49.1 4.1 72 65-137 153-234 (529)
230 KOG0046 Ca2+-binding actin-bun 88.5 0.38 8.2E-06 49.4 3.2 72 137-210 12-88 (627)
231 PF15627 CEP76-C2: CEP76 C2 do 87.9 1.9 4.2E-05 37.7 6.7 90 53-142 8-120 (156)
232 KOG4065 Uncharacterized conser 87.8 0.84 1.8E-05 37.6 4.1 59 146-204 70-142 (144)
233 KOG4347 GTPase-activating prot 86.7 0.75 1.6E-05 48.4 4.1 60 177-237 553-612 (671)
234 KOG3555 Ca2+-binding proteogly 86.5 0.79 1.7E-05 44.7 3.9 60 181-244 252-311 (434)
235 KOG4578 Uncharacterized conser 85.2 0.81 1.7E-05 44.4 3.2 67 181-247 335-402 (421)
236 KOG0169 Phosphoinositide-speci 84.9 2.4 5.3E-05 45.6 6.9 92 146-245 139-234 (746)
237 KOG2562 Protein phosphatase 2 83.7 2.1 4.5E-05 43.6 5.5 79 184-269 283-365 (493)
238 PRK09629 bifunctional thiosulf 81.3 0.89 1.9E-05 48.8 2.0 32 372-405 341-375 (610)
239 KOG1955 Ral-GTPase effector RA 79.8 4.4 9.6E-05 41.5 6.2 66 176-243 228-293 (737)
240 KOG1029 Endocytic adaptor prot 78.8 2.3 4.9E-05 45.8 4.0 60 181-242 197-256 (1118)
241 KOG1327 Copine [Signal transdu 78.0 3.3 7.1E-05 43.1 4.8 61 79-139 40-104 (529)
242 cd08398 C2_PI3K_class_I_alpha 74.3 13 0.00027 32.8 6.9 84 52-136 6-105 (158)
243 cd08683 C2_C2cd3 C2 domain fou 73.2 7.3 0.00016 33.1 4.8 70 70-139 34-132 (143)
244 KOG1707 Predicted Ras related/ 71.6 14 0.00031 38.9 7.5 32 216-247 316-347 (625)
245 KOG3866 DNA-binding protein of 69.8 6.6 0.00014 37.9 4.3 62 182-243 247-324 (442)
246 KOG1029 Endocytic adaptor prot 68.8 4 8.6E-05 44.0 2.9 58 146-206 198-256 (1118)
247 KOG2060 Rab3 effector RIM1 and 67.4 5.4 0.00012 39.6 3.3 84 52-137 267-364 (405)
248 KOG0042 Glycerol-3-phosphate d 66.1 11 0.00023 39.7 5.2 67 179-245 593-659 (680)
249 KOG1955 Ral-GTPase effector RA 64.0 6.6 0.00014 40.3 3.3 64 138-207 225-293 (737)
250 KOG4578 Uncharacterized conser 63.2 6.3 0.00014 38.4 2.8 56 146-207 336-398 (421)
251 PF09069 EF-hand_3: EF-hand; 61.7 58 0.0013 25.8 7.6 62 181-245 5-77 (90)
252 cd08694 C2_Dock-A C2 domains f 61.6 26 0.00057 31.9 6.4 38 80-117 53-92 (196)
253 PF05517 p25-alpha: p25-alpha 61.3 27 0.00058 30.5 6.3 56 190-245 13-71 (154)
254 cd08693 C2_PI3K_class_I_beta_d 61.0 35 0.00076 30.4 7.1 69 52-120 6-87 (173)
255 PF14429 DOCK-C2: C2 domain in 60.0 15 0.00032 32.9 4.6 57 80-136 59-120 (184)
256 KOG3555 Ca2+-binding proteogly 59.7 7.3 0.00016 38.3 2.6 60 146-209 253-312 (434)
257 KOG2243 Ca2+ release channel ( 59.5 15 0.00033 42.3 5.1 59 183-242 4061-4119(5019)
258 PLN02952 phosphoinositide phos 59.0 22 0.00049 38.0 6.3 53 192-245 13-67 (599)
259 cd08397 C2_PI3K_class_III C2 d 58.8 23 0.00049 31.1 5.4 47 90-136 57-106 (159)
260 KOG0035 Ca2+-binding actin-bun 56.5 20 0.00043 39.8 5.5 68 178-245 746-818 (890)
261 KOG3866 DNA-binding protein of 56.3 16 0.00034 35.5 4.2 70 146-217 247-334 (442)
262 KOG3837 Uncharacterized conser 55.8 14 0.00031 37.3 3.9 76 77-154 401-488 (523)
263 PF05042 Caleosin: Caleosin re 55.8 34 0.00074 30.4 5.9 60 181-241 98-164 (174)
264 cd08695 C2_Dock-B C2 domains f 54.9 25 0.00054 31.9 5.1 37 80-116 53-91 (189)
265 PF08726 EFhand_Ca_insen: Ca2+ 54.3 10 0.00022 28.5 2.1 29 212-241 3-31 (69)
266 cd08687 C2_PKN-like C2 domain 51.2 66 0.0014 25.7 6.2 49 69-120 9-58 (98)
267 cd08697 C2_Dock-D C2 domains f 47.9 77 0.0017 28.6 7.1 68 49-119 23-97 (185)
268 cd08679 C2_DOCK180_related C2 47.2 73 0.0016 28.3 6.9 39 81-120 54-94 (178)
269 cd08380 C2_PI3K_like C2 domain 46.6 63 0.0014 27.9 6.3 84 53-136 7-106 (156)
270 KOG0035 Ca2+-binding actin-bun 46.6 38 0.00081 37.7 5.7 93 146-239 750-848 (890)
271 cd08399 C2_PI3K_class_I_gamma 46.4 91 0.002 28.0 7.3 66 53-118 9-87 (178)
272 PF12174 RST: RCD1-SRO-TAF4 (R 45.4 29 0.00063 26.1 3.3 48 194-244 7-54 (70)
273 cd04012 C2A_PI3K_class_II C2 d 43.9 70 0.0015 28.2 6.2 86 51-136 5-118 (171)
274 PF09279 EF-hand_like: Phospho 42.1 31 0.00067 26.2 3.2 46 216-264 1-46 (83)
275 PF12416 DUF3668: Cep120 prote 40.9 1.2E+02 0.0027 30.0 7.9 99 56-156 2-116 (340)
276 PF03147 FDX-ACB: Ferredoxin-f 40.8 68 0.0015 25.2 5.1 50 324-378 37-91 (94)
277 KOG1265 Phospholipase C [Lipid 39.9 73 0.0016 35.5 6.5 82 196-280 205-293 (1189)
278 KOG0998 Synaptic vesicle prote 36.7 12 0.00027 41.7 0.2 62 181-244 285-346 (847)
279 PF00792 PI3K_C2: Phosphoinosi 35.8 54 0.0012 27.8 4.1 55 83-137 23-85 (142)
280 PF14513 DAG_kinase_N: Diacylg 35.6 51 0.0011 28.3 3.8 37 192-228 45-82 (138)
281 KOG4004 Matricellular protein 33.7 14 0.0003 33.5 0.1 53 186-241 194-248 (259)
282 cd08696 C2_Dock-C C2 domains f 32.7 72 0.0016 28.6 4.4 40 80-119 54-95 (179)
283 PF08414 NADPH_Ox: Respiratory 29.9 99 0.0021 24.9 4.2 59 181-244 32-93 (100)
284 PF00404 Dockerin_1: Dockerin 29.7 65 0.0014 18.3 2.3 12 190-201 2-13 (21)
285 KOG1452 Predicted Rho GTPase-a 28.8 1.2E+02 0.0026 29.7 5.4 76 49-126 46-130 (442)
286 PF08349 DUF1722: Protein of u 27.1 2.6E+02 0.0057 22.9 6.6 45 201-245 55-99 (117)
287 PLN02228 Phosphoinositide phos 25.8 2E+02 0.0044 30.7 6.9 61 181-243 26-92 (567)
288 PF09068 EF-hand_2: EF hand; 24.5 1.7E+02 0.0038 24.5 5.1 62 181-242 43-124 (127)
289 PF04876 Tenui_NCP: Tenuivirus 24.5 2.8E+02 0.0061 24.1 6.2 33 178-210 82-115 (175)
290 PF08672 APC2: Anaphase promot 24.0 2.3E+02 0.0051 20.5 5.0 40 203-244 4-45 (60)
291 smart00592 BRK domain in trans 22.6 47 0.001 22.6 1.1 13 324-336 5-17 (45)
292 PF02761 Cbl_N2: CBL proto-onc 22.0 2.8E+02 0.0061 21.7 5.3 60 178-242 10-69 (85)
293 KOG4027 Uncharacterized conser 21.6 5.7E+02 0.012 22.6 8.5 77 59-135 16-109 (187)
294 PF14513 DAG_kinase_N: Diacylg 21.6 2E+02 0.0043 24.7 4.9 64 194-263 6-77 (138)
295 KOG4347 GTPase-activating prot 21.4 1E+02 0.0022 33.1 3.7 32 213-244 553-584 (671)
296 KOG3490 Transcription elongati 21.2 67 0.0014 26.1 1.8 77 251-349 25-101 (111)
297 PF07533 BRK: BRK domain; Int 20.2 51 0.0011 22.6 0.9 14 323-336 6-19 (46)
298 KOG2243 Ca2+ release channel ( 20.1 99 0.0022 36.3 3.4 58 146-206 4060-4119(5019)
No 1
>PLN02964 phosphatidylserine decarboxylase
Probab=100.00 E-value=4.7e-88 Score=698.29 Aligned_cols=404 Identities=71% Similarity=1.115 Sum_probs=372.6
Q ss_pred CCCCCCCCCccccchhhhhcccccceeeecccCC-CCCCCCCccccccccCCccEEEEEEEEEEEcCCCCCeEEEEEecC
Q 015462 1 MGHGSSKEDESVSRTSRFRKKFHLHRERRRSRGN-GSNSGSHHHNRVLNEEDFAGIALLTLISAEMKFKDKWLACVSLGE 79 (406)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~v~v~~a~~~~~~dP~v~vs~g~ 79 (406)
||||+|+.. +.||++++++||+.+|+++|+... -.|.++++++|+++++++.|++.|+|++|+|.+++++|+|+++|.
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (644)
T PLN02964 1 MGNGNSREA-KESRRSKLRQKLQKFRIRRRHLRCSRGSSSGSVSQRAVSAEDFSGIALLTLVGAEMKFKDKWLACVSFGE 79 (644)
T ss_pred CCCCCCCcc-ccCCcchHHHHHHHHHHHHHhhhhccCCCCccccccceecccccCeEEEEeehhhhccCCcEEEEEEecc
Confidence 999999963 459999999999987755543222 223457899999999999999999999999999999999999999
Q ss_pred ceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccCcceeechhcccCCCcch-hhhhhccCCCCCc
Q 015462 80 QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDAD-SEVFDLLDPSSSN 158 (406)
Q Consensus 80 k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG~~~l~L~~lLs~~e~~~-~e~F~~~D~d~dG 158 (406)
++|||.+.+||+||+||++..|.++.++.+.+.|+|||+++++.+++++.|++++.++..++. .+ ++.|+.+|+|++|
T Consensus 80 ~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi-~elkeaF~lfD~dgdG 158 (644)
T PLN02964 80 QTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEP-ESACESFDLLDPSSSN 158 (644)
T ss_pred eeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHH-HHHHHHHHHHCCCCCC
Confidence 999999999999999999888888887888899999999999999999999999999876544 45 8999999999999
Q ss_pred chhhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHH
Q 015462 159 KIVGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELA 238 (406)
Q Consensus 159 ~Il~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~ 238 (406)
++++.++..++...|++.+..|++.+|+.+|.|++|.|+++||..++..++...++++++++|+.+|+|++|+|+.+||+
T Consensus 159 ~iLg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~ 238 (644)
T PLN02964 159 KVVGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELA 238 (644)
T ss_pred cCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHH
Confidence 99999999998446888888889999999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHhhcccCccccCchhHHHhhhhccccCCeeeEeeecccCcccccccCCCcCchhhhhhhHhhhhhcccccccccccC
Q 015462 239 ALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEGTGNQVMTGGFLTDKQASNVWMFKLSEWGHFSSYDVGLN 318 (406)
Q Consensus 239 ~~l~~~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def~~~~~~~~~fvt~~~a~~~w~~k~~~k~~~~~y~~g~~ 318 (406)
++|..+.+....+++||+|.+.++..|+.+++||+++|+||.+++++|+++|||++||+|+||+|+++|++||+|+||+|
T Consensus 239 ~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~~~c~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~~~~~y~~g~~ 318 (644)
T PLN02964 239 ALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHMTLCFDEGTGNQVMTGGFLTDKQASYGWMFKLSEWAHLSTYDVGLN 318 (644)
T ss_pred HHHHhcccCcchhhhchhhcCcccchhhHHHHHHHHHhhcccccceeeccCccchhHHhHHHHHHHHHHHhccccccccc
Confidence 99999888888999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCce-eEEEeeCcccchhhhhccceeEEEEEeeeeccccCCccchHHHHHHHHhhHHhhcccCCchhhhchhhHHHhcc
Q 015462 319 SGSRA-HILVFDRRTKRLVEELIDVKIVMSMRAIYQSKIGLGLMDIGTKELLKSISEKQGRKMNSVESSKEIPKFVNFFK 397 (406)
Q Consensus 319 ~~~~~-~i~~~dr~tg~~~~E~~~~~~~~~~~~ly~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~s~~~i~~fi~~~~ 397 (406)
+|.|+ +|+|+||+||++++|+|+++++++|||||+++.|+.+....++.+|+.+|.+||++||+|+|++.|++||++|+
T Consensus 319 ~~~~~~~i~~~dR~t~~~~~E~v~~~~~~~~~~lY~~~~G~~~l~~~~~~~l~~~S~~~G~~~dsp~S~~~I~~Fi~~~~ 398 (644)
T PLN02964 319 TGSSASHILVFDRKSKRLVEELIDSKIVLSMRAIYQSKIGLRLMDQGAKEILQRLSEKQGKKMNSVESAQDIPKFLEFFK 398 (644)
T ss_pred cCCCcCceEEEECCCCcEEEEEeeeeehhhHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhHcCChhhHHHHHHHHHHhh
Confidence 66655 99999999999999999999999999999999998777888888889999999999999999999999999997
Q ss_pred cCCCCCCCC
Q 015462 398 FRLVFPSLA 406 (406)
Q Consensus 398 ~~i~~~e~~ 406 (406)
.+|||+|+.
T Consensus 399 ~~id~~E~~ 407 (644)
T PLN02964 399 DQINMDEVK 407 (644)
T ss_pred cCcCHHHhh
Confidence 789999863
No 2
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=9.3e-63 Score=488.37 Aligned_cols=397 Identities=54% Similarity=0.801 Sum_probs=318.6
Q ss_pred CCCCCCCCCccccchhhhhcccccceeeecccC-------CCCCCCCCccccccc--------------cCCccEEEEEE
Q 015462 1 MGHGSSKEDESVSRTSRFRKKFHLHRERRRSRG-------NGSNSGSHHHNRVLN--------------EEDFAGIALLT 59 (406)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--------------~~~~~g~l~v~ 59 (406)
||+|++-..+-.+||++.+.+.+-++-|||..- +-+...|...++..+ ++++.|+.+++
T Consensus 206 M~n~S~s~~~~E~rr~e~~~~~~sf~~err~sip~~~~~~sis~~~gl~~~~s~s~~~~~e~~~~~~~~~dd~~gi~ll~ 285 (975)
T KOG2419|consen 206 MGNGSNSVEGKESRRSEDRNKSQSFRTERRYSIPNDTIFDSISEVVGLNDQRSVSLNDFEEADHPNVHDADDFTGIALLT 285 (975)
T ss_pred hcCcccccchhhhhhhhhhccccceeecccccCCcccccccccccccccccccccccccccccCccccccchhhhhHHHH
Confidence 899965554233999999999999998888875 333455777888888 78899999999
Q ss_pred EEEEEc----------CCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeee---CCCceeEEEEeeccccCCCcc
Q 015462 60 LISAEM----------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLET---NGPHVARISVFETNRLSKSNL 126 (406)
Q Consensus 60 v~~a~~----------~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~---~~~~~l~fsV~D~D~~s~~D~ 126 (406)
++.|.+ +|+++|++|++++++.|||.+..++++|+||| . .+|+ ...+.+.+.+.+.+....+|-
T Consensus 286 lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe--~-~~E~~~Fqsn~~l~~kiv~~~~~~lndS 362 (975)
T KOG2419|consen 286 LIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNE--D-EREDSDFQSNRYLGNKIVGYCELDLNDS 362 (975)
T ss_pred HhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhcccccccccc--c-ccccccchhhHHHhhhccccccccccch
Confidence 999974 49999999999999999999999999999999 5 3332 124556777777777666664
Q ss_pred cCcceee--chhcccCCCcchhhhhhccCCCCCc-----------------ch---hhhhhcccCCCCChhhHHHHHHHh
Q 015462 127 EGYCEVD--LLEFLTKDSDADSEVFDLLDPSSSN-----------------KI---VGKISLSCSVEDPIETEKSFARRI 184 (406)
Q Consensus 127 iG~~~l~--L~~lLs~~e~~~~e~F~~~D~d~dG-----------------~I---l~~~l~~l~~~~~~e~e~~~~~~~ 184 (406)
.+...+. .......++......|+++|+.... .+ ++..+.....+.+.+.+.-+...+
T Consensus 363 ~A~f~vq~~~sn~~~~~pE~~~~sfnl~~~a~sn~~a~r~~~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~ 442 (975)
T KOG2419|consen 363 YANFVVQRAKSNFFISEPESTCKSFNLLDPASSNLPALRNRLSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRI 442 (975)
T ss_pred hhhhhhhhhhccccccCccccceEEEeecCCcccchhhhhccCccccccCchhHhhhhhHHhhhhhhccccchhhhhhhc
Confidence 4332111 0011111111114566666554322 01 445555555556767777778899
Q ss_pred chhcccCCCCceeHHHHHHHHHHhcccCcHH---------HHHHHHHHhccCCC-----------------------CCC
Q 015462 185 LSIVDYNQDGQLSFKEFSDLISAFGNQVAAN---------KKEELFKAADKNGD-----------------------GVV 232 (406)
Q Consensus 185 f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~e---------ei~~~F~~~D~d~d-----------------------G~I 232 (406)
+..+|.+.++.++|.+|.++...++...... +...+|..+|.+|+ |.+
T Consensus 443 ~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s~~~v 522 (975)
T KOG2419|consen 443 LSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKSFGVV 522 (975)
T ss_pred ccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccccccCee
Confidence 9999999999999999998887776544333 36788999999999 999
Q ss_pred CHHHHHHHHHhh-------------ccc----------------------------------CccccCchhHHHhhhh-c
Q 015462 233 SVDELAALLALQ-------------QEK----------------------------------EPLMNCCPVCGETLEV-A 264 (406)
Q Consensus 233 s~~E~~~~l~~~-------------~e~----------------------------------~~~~~~cp~~~~~l~~-~ 264 (406)
+.+|++.+++.. .+. ...+|.||.|.+.+.. .
T Consensus 523 tVDe~v~ll~~~i~~V~~~~er~tq~~q~p~~n~~n~~~~~~Qs~~r~q~~E~~qs~~~~~~~~~i~nCP~C~~~~~~~~ 602 (975)
T KOG2419|consen 523 TVDELVALLALDIIQVMLYLERLTQQEQEPIINHFNKSAWAGQSITRSQLVEGLQSWRKSTNFKRIWNCPVCGEALQPTR 602 (975)
T ss_pred EHHHHHHHHHHHHHHHHHHHHHhhhccccchhhcccCCCCCccccchhhhhhhhhcccccccceeecCCccHHhhhccch
Confidence 999999888721 111 1235799999998655 4
Q ss_pred cccCCeeeEeeecccCcccccccCCCcCchhhhhhhHhhhhhcccccccccccCCCCceeEEEeeCcccchhhhhcccee
Q 015462 265 DMVNTMIHLTLCFDEGTGNQVMTGGFLTDKQASNVWMFKLSEWGHFSSYDVGLNSGSRAHILVFDRRTKRLVEELIDVKI 344 (406)
Q Consensus 265 D~~~diih~~ic~def~~~~~~~~~fvt~~~a~~~w~~k~~~k~~~~~y~~g~~~~~~~~i~~~dr~tg~~~~E~~~~~~ 344 (406)
++.+-++|+|+|+||.+++++|+++|||+.||+||||+|+++|++||+|++| +++|+|+||||+||+++||+|..||
T Consensus 603 ~~~~a~iH~a~C~~~~~~~~~m~~syvs~~qAs~rWfsK~~~k~~ygty~vG---Ss~a~ilVqdR~Tg~ivEEki~a~V 679 (975)
T KOG2419|consen 603 DKLNAMIHMALCFDEGTGNQTMTGSYVSDRQASYRWFSKLSEKTHYGTYDVG---SSAANILVQDRKTGRIVEEKIDAKV 679 (975)
T ss_pred hhhhhheeeeeeeccccCceeeeccccchhhHHHHHHHHHHHHhhccceecC---CCcceEEEEecccchHHHHhhccee
Confidence 7888899999999999999999999999999999999999999999999999 7788999999999999999999999
Q ss_pred EEEEEeeeeccccCCccchHHHHHHHHhhHHhhcccCCchhhhchhhHHHhcccCCCCCCC
Q 015462 345 VMSMRAIYQSKIGLGLMDIGTKELLKSISEKQGRKMNSVESSKEIPKFVNFFKFRLVFPSL 405 (406)
Q Consensus 345 ~~~~~~ly~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~s~~~i~~fi~~~~~~i~~~e~ 405 (406)
++|||+||+++.|++++++.++.+|++||+|||+|||||+|+++|||||+|| .|||+|+
T Consensus 680 ~lgmR~iY~gk~~~r~~~~k~k~iL~~Ls~kQGkK~dS~~Sak~I~pFi~Ff--~lnm~ev 738 (975)
T KOG2419|consen 680 VLGMRAIYQGKIGLRLMDQKAKEILQTLSEKQGKKMDSVESAKQIPPFIEFF--KLNMAEV 738 (975)
T ss_pred eeehhhhhcccccchhhhhhHHHHHHHHHHHhccccCchhhhhhcchHHhhh--hcchhhh
Confidence 9999999999999999999999999999999999999999999999999999 8999986
No 3
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.70 E-value=5.1e-17 Score=140.63 Aligned_cols=90 Identities=16% Similarity=0.297 Sum_probs=78.9
Q ss_pred CccEEEEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCC
Q 015462 51 DFAGIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKS 124 (406)
Q Consensus 51 ~~~g~l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~ 124 (406)
.+.|.|+|+|++|. +..++||||++.+|+|+.||+++.+++||+|||++.|.+.+ ....+.++|||+|.++.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d-~~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKD-PNTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecC-CCceEEEEEEeCCCCCcc
Confidence 46899999999995 56899999999999999999999999999999955554443 456699999999999999
Q ss_pred cccCcceeechhcccCC
Q 015462 125 NLEGYCEVDLLEFLTKD 141 (406)
Q Consensus 125 D~iG~~~l~L~~lLs~~ 141 (406)
|++|+++|++..++...
T Consensus 82 D~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQ 98 (168)
T ss_pred cccceeeeccHHHHHHh
Confidence 99999999999887544
No 4
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.69 E-value=4.5e-17 Score=142.72 Aligned_cols=132 Identities=30% Similarity=0.508 Sum_probs=115.2
Q ss_pred cch-hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccC-----
Q 015462 143 DAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQV----- 212 (406)
Q Consensus 143 ~~~-~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~----- 212 (406)
..+ +++|..+|.+++|.| ++.+++.++. .|++.+ +..+++.+|.|++|.|+++||..++.......
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~-~~t~~e---l~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~ 82 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQ-NPTEEE---LRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEA 82 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC-CCCHHH---HHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccc
Confidence 344 889999999999999 8888999987 677777 99999999999999999999999998855432
Q ss_pred cHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcccCccccCchhHHHhhhhccccCCeeeEeeecccCccccccc
Q 015462 213 AANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEGTGNQVMT 287 (406)
Q Consensus 213 ~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def~~~~~~~ 287 (406)
..++++++|+.||+|++|+||.+||..+|..+|+..+. ..|.++++..|.++| +.|||++| .++|.
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~----~e~~~mi~~~d~d~d---g~i~f~ef--~~~m~ 148 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTD----EECKEMIREVDVDGD---GKVNFEEF--VKMMS 148 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCH----HHHHHHHHhcCCCCC---CeEeHHHH--HHHHh
Confidence 34599999999999999999999999999999988763 479999999999998 88999888 55554
No 5
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.67 E-value=1.1e-16 Score=139.29 Aligned_cols=133 Identities=26% Similarity=0.339 Sum_probs=118.3
Q ss_pred hcccCCCcch-hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHH-hc
Q 015462 136 EFLTKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FG 209 (406)
Q Consensus 136 ~lLs~~e~~~-~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~-lg 209 (406)
..++++++.+ ++.|.++|++++|.| +..+++.+++ .+++.+ |..+|..+|. +.|.|+|.+|+.+|.. +.
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~-~~s~~e---i~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGF-NPSEAE---INKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCC-CCcHHH---HHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 3356667767 899999999999999 7888888887 666666 9999999999 8999999999999988 45
Q ss_pred ccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcccCccccCchhHHHhhhhccccCCeeeEeeecccC
Q 015462 210 NQVAANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 210 ~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
...+++++..+|+.||+|++|+|+..||+.+++.+|+..+.. .+..+|...|.+++ |.||+++|
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~de----ev~~ll~~~d~d~d---G~i~~~eF 150 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDE----EVEKLLKEYDEDGD---GEIDYEEF 150 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHH----HHHHHHHhcCCCCC---ceEeHHHH
Confidence 667789999999999999999999999999999999998874 78999999999898 89999998
No 6
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.63 E-value=1.7e-15 Score=125.08 Aligned_cols=90 Identities=16% Similarity=0.291 Sum_probs=76.0
Q ss_pred EEEEEEEEEEE----c------CCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeee-CCCceeEEEEeeccccC
Q 015462 54 GIALLTLISAE----M------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLET-NGPHVARISVFETNRLS 122 (406)
Q Consensus 54 g~l~v~v~~a~----~------~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~-~~~~~l~fsV~D~D~~s 122 (406)
|+|.|+|++|+ . ++.+||||+|.++++.+||+++++++||+|||.+.|.+.. .....+.|.|||+|.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 89999999996 1 1347999999999999999999999999999966664432 23457899999999999
Q ss_pred CCcccCcceeechhcccCCCc
Q 015462 123 KSNLEGYCEVDLLEFLTKDSD 143 (406)
Q Consensus 123 ~~D~iG~~~l~L~~lLs~~e~ 143 (406)
.+|++|.+.+++.+++.....
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~~ 101 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAPQ 101 (108)
T ss_pred CCcceEEEEEEHHHHHhhCCC
Confidence 999999999999998865544
No 7
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.62 E-value=2.8e-15 Score=126.15 Aligned_cols=98 Identities=15% Similarity=0.285 Sum_probs=78.4
Q ss_pred cEEEEEEEEEEE----c-CCCCCeEEEEEecCceeEeeecCC-CCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcc
Q 015462 53 AGIALLTLISAE----M-KFKDKWLACVSLGEQTCRTAISDN-TDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (406)
Q Consensus 53 ~g~l~v~v~~a~----~-~~~~dP~v~vs~g~k~~kT~vi~~-tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~ 126 (406)
+|.|.|+|++|+ . .+++||||+|.+|++++||+++.+ ++||+|||+|.|.+.. ....+.|+|||.|.++++|.
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~-~~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPE-GVDSIYIEIFDERAFTMDER 79 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecC-CCcEEEEEEEeCCCCcCCce
Confidence 589999999996 2 278899999999999999999875 7999999977776654 34579999999999999999
Q ss_pred cCcceeechh-cccCCCcchhhhhhccC
Q 015462 127 EGYCEVDLLE-FLTKDSDADSEVFDLLD 153 (406)
Q Consensus 127 iG~~~l~L~~-lLs~~e~~~~e~F~~~D 153 (406)
+|.+.+++.. +...... ..+|.+.+
T Consensus 80 iG~~~i~l~~~~~~g~~~--~~W~~L~~ 105 (121)
T cd04016 80 IAWTHITIPESVFNGETL--DDWYSLSG 105 (121)
T ss_pred EEEEEEECchhccCCCCc--cccEeCcC
Confidence 9999999964 4433222 34555544
No 8
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.57 E-value=1.4e-14 Score=124.58 Aligned_cols=87 Identities=23% Similarity=0.390 Sum_probs=77.0
Q ss_pred cEEEEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcc
Q 015462 53 AGIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (406)
Q Consensus 53 ~g~l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~ 126 (406)
.|.|+|+|++|+ ..+.+||||++.++.+.+||+++++++||.|||++.|.+.......+.++|||+|.++.+++
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~ 93 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDF 93 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCe
Confidence 799999999996 35678999999999999999999999999999966665544345679999999999999999
Q ss_pred cCcceeechhccc
Q 015462 127 EGYCEVDLLEFLT 139 (406)
Q Consensus 127 iG~~~l~L~~lLs 139 (406)
+|.+.+++.+++.
T Consensus 94 lG~~~i~l~~l~~ 106 (136)
T cd08375 94 LGRTEIRVADILK 106 (136)
T ss_pred eEEEEEEHHHhcc
Confidence 9999999999875
No 9
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.56 E-value=1.2e-14 Score=120.96 Aligned_cols=88 Identities=13% Similarity=0.142 Sum_probs=71.9
Q ss_pred CCccEEEEEEEEEEE---cCCCCCeEEEEEecC----ceeEeeecCCCCCCcccceEEEEeee--CCCceeEEEEeeccc
Q 015462 50 EDFAGIALLTLISAE---MKFKDKWLACVSLGE----QTCRTAISDNTDKPIWNSEKKLLLET--NGPHVARISVFETNR 120 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~---~~~~~dP~v~vs~g~----k~~kT~vi~~tLnP~wne~~~~~~e~--~~~~~l~fsV~D~D~ 120 (406)
.+..|.|.|+|++|+ +.+.+||||+|.+.- ++.+|+++++|+||+|||+|.|-+.. -....+.|+|||.|+
T Consensus 10 ~~~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr 89 (118)
T cd08677 10 DKQKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR 89 (118)
T ss_pred cCcCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC
Confidence 456899999999996 445589999998842 57799999999999999955443321 124569999999999
Q ss_pred cCCCcccCcceeechhc
Q 015462 121 LSKSNLEGYCEVDLLEF 137 (406)
Q Consensus 121 ~s~~D~iG~~~l~L~~l 137 (406)
+++||.||.+.+++.++
T Consensus 90 fs~~d~IG~v~l~l~~~ 106 (118)
T cd08677 90 FSRHSTLGELRLKLADV 106 (118)
T ss_pred CCCCceEEEEEEccccc
Confidence 99999999999999875
No 10
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.51 E-value=8e-14 Score=115.64 Aligned_cols=88 Identities=18% Similarity=0.331 Sum_probs=72.9
Q ss_pred EEEEEEEEEEE------cC-CCCCeEEEEEe---cCceeEeeecCCCCCCcccceEEEEeeeC---CCceeEEEEeeccc
Q 015462 54 GIALLTLISAE------MK-FKDKWLACVSL---GEQTCRTAISDNTDKPIWNSEKKLLLETN---GPHVARISVFETNR 120 (406)
Q Consensus 54 g~l~v~v~~a~------~~-~~~dP~v~vs~---g~k~~kT~vi~~tLnP~wne~~~~~~e~~---~~~~l~fsV~D~D~ 120 (406)
|+|.|+|++|+ .. +.+||||+|.+ ++..++|+++++++||+|||++.|.+... ....+.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 79999999996 23 67899999987 34578999999999999999665543322 24579999999999
Q ss_pred cCCCcccCcceeechhcccCC
Q 015462 121 LSKSNLEGYCEVDLLEFLTKD 141 (406)
Q Consensus 121 ~s~~D~iG~~~l~L~~lLs~~ 141 (406)
++.+|++|.+.+++.++++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~ 101 (111)
T cd04041 81 FTADDRLGRVEIDLKELIEDR 101 (111)
T ss_pred CCCCCcceEEEEEHHHHhcCC
Confidence 999999999999999987443
No 11
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.50 E-value=6.6e-14 Score=118.75 Aligned_cols=98 Identities=17% Similarity=0.310 Sum_probs=77.5
Q ss_pred EEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeee-----CCCceeEEEEeeccccCCC
Q 015462 56 ALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLET-----NGPHVARISVFETNRLSKS 124 (406)
Q Consensus 56 l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~-----~~~~~l~fsV~D~D~~s~~ 124 (406)
|+|+|++|+ ..+.+||||+|.++.+.+||+++++++||+|||+|.|.+.. .....+.+.|||++.++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 579999996 35678999999999999999999999999999966665543 1355799999999999999
Q ss_pred cccCcceeechhcccCCCcchhhhhhccC
Q 015462 125 NLEGYCEVDLLEFLTKDSDADSEVFDLLD 153 (406)
Q Consensus 125 D~iG~~~l~L~~lLs~~e~~~~e~F~~~D 153 (406)
+++|.+.+++.++..........+|.+.+
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~ 109 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLES 109 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence 99999999999986322221145555543
No 12
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.50 E-value=8.5e-14 Score=117.97 Aligned_cols=98 Identities=16% Similarity=0.257 Sum_probs=78.3
Q ss_pred EEEEEEEEEE----c-----CCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccC---
Q 015462 55 IALLTLISAE----M-----KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLS--- 122 (406)
Q Consensus 55 ~l~v~v~~a~----~-----~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s--- 122 (406)
+|.|+|++|+ + .+.+||||+|.+|.+.+||+++++++||+|||+|.|.+.. ....+.++|||.|.++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~-~~~~l~v~V~d~d~~~~~~ 79 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD-PCTVLTVGVFDNSQSHWKE 79 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecC-CCCEEEEEEEECCCccccc
Confidence 4789999997 2 4788999999999999999999999999999966665543 2347999999999874
Q ss_pred ---CCcccCcceeechhcccCCCcchhhhhhccCCC
Q 015462 123 ---KSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPS 155 (406)
Q Consensus 123 ---~~D~iG~~~l~L~~lLs~~e~~~~e~F~~~D~d 155 (406)
.+|++|.+.+++..+...... ...|.+.+.+
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~~~--~~~~~L~~~~ 113 (126)
T cd08379 80 AVQPDVLIGKVRIRLSTLEDDRVY--AHSYPLLSLN 113 (126)
T ss_pred cCCCCceEEEEEEEHHHccCCCEE--eeEEEeEeCC
Confidence 899999999999987654433 3455555544
No 13
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.49 E-value=1.6e-13 Score=116.51 Aligned_cols=94 Identities=19% Similarity=0.153 Sum_probs=78.9
Q ss_pred cccccCCccEEEEEEEEEEE-----cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEe-eeCCCceeEEEEeec
Q 015462 45 RVLNEEDFAGIALLTLISAE-----MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL-ETNGPHVARISVFET 118 (406)
Q Consensus 45 ~~~~~~~~~g~l~v~v~~a~-----~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~-e~~~~~~l~fsV~D~ 118 (406)
...+++.-.|.|.|+|++|+ ..+..||||+|.++.+.+||+++++++||+|||+|.|.. +......+.|+|||+
T Consensus 19 ~~~~~~~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~ 98 (127)
T cd04032 19 NCCPTRRGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDR 98 (127)
T ss_pred CcCcCcCCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeC
Confidence 35567778999999999996 245679999999999999999999999999999655532 223466799999999
Q ss_pred cccCCCcccCcceeechhcc
Q 015462 119 NRLSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 119 D~~s~~D~iG~~~l~L~~lL 138 (406)
|.++.+|++|.+.+++....
T Consensus 99 d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 99 DNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCCeeEEEEEEecCCc
Confidence 99999999999999988654
No 14
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.48 E-value=1.6e-13 Score=119.28 Aligned_cols=90 Identities=20% Similarity=0.360 Sum_probs=76.6
Q ss_pred cEEEEEEEEEEE-c----CCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCccc
Q 015462 53 AGIALLTLISAE-M----KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLE 127 (406)
Q Consensus 53 ~g~l~v~v~~a~-~----~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~i 127 (406)
.|.|.|+|++|. + ...+||||+|+++.+..+|+++++++||+|||++.|.+... ...+.|+|||+|.++.+|.+
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~i 79 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDSM 79 (145)
T ss_pred CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCEE
Confidence 489999999996 1 25779999999999999999999999999999666555432 55689999999999999999
Q ss_pred CcceeechhcccCCCc
Q 015462 128 GYCEVDLLEFLTKDSD 143 (406)
Q Consensus 128 G~~~l~L~~lLs~~e~ 143 (406)
|.+.+++.+++.....
T Consensus 80 G~a~i~l~~l~~~~~~ 95 (145)
T cd04038 80 GEAEIDLEPLVEAAKL 95 (145)
T ss_pred EEEEEEHHHhhhhhhh
Confidence 9999999998755443
No 15
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.47 E-value=1.6e-13 Score=113.65 Aligned_cols=99 Identities=21% Similarity=0.324 Sum_probs=79.5
Q ss_pred EEEEEEEEE----c---CCCCCeEEEEEecCceeEeeecCCCCCCcc-cceEEEEeeeCC--CceeEEEEeeccccCCCc
Q 015462 56 ALLTLISAE----M---KFKDKWLACVSLGEQTCRTAISDNTDKPIW-NSEKKLLLETNG--PHVARISVFETNRLSKSN 125 (406)
Q Consensus 56 l~v~v~~a~----~---~~~~dP~v~vs~g~k~~kT~vi~~tLnP~w-ne~~~~~~e~~~--~~~l~fsV~D~D~~s~~D 125 (406)
|.|+|++|+ + .+.+||||+|.++.+..||+++++++||+| ||++.|.+.... ...+.|+|||+|.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 579999996 2 346799999999999999999999999999 996555544321 357999999999999999
Q ss_pred ccCcceeechhcccCCCcch-hhhhhccCC
Q 015462 126 LEGYCEVDLLEFLTKDSDAD-SEVFDLLDP 154 (406)
Q Consensus 126 ~iG~~~l~L~~lLs~~e~~~-~e~F~~~D~ 154 (406)
++|.+.+++.++..+..... ..+|.++|.
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~~ 110 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYDT 110 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEcccC
Confidence 99999999999887532322 567777763
No 16
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.46 E-value=3.2e-13 Score=113.51 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=69.8
Q ss_pred EEEEEEEEEE-----cCCCCCeEEEEEe-c----C--ceeEeeecCCCCCCcccceEEEEeeeC---CCceeEEEEeecc
Q 015462 55 IALLTLISAE-----MKFKDKWLACVSL-G----E--QTCRTAISDNTDKPIWNSEKKLLLETN---GPHVARISVFETN 119 (406)
Q Consensus 55 ~l~v~v~~a~-----~~~~~dP~v~vs~-g----~--k~~kT~vi~~tLnP~wne~~~~~~e~~---~~~~l~fsV~D~D 119 (406)
.|.|+|++|+ -.+.+||||+|.+ | . ++++|+++++++||+|||+|.|.+... ....+.|.|+|+|
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 3789999996 1367799999997 3 2 467999999999999999666654321 1345899999999
Q ss_pred ccCCCcccCcceeechhcccCCC
Q 015462 120 RLSKSNLEGYCEVDLLEFLTKDS 142 (406)
Q Consensus 120 ~~s~~D~iG~~~l~L~~lLs~~e 142 (406)
..+++|.+|.+.+++..+.....
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~ 103 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGS 103 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCc
Confidence 88889999999999998865443
No 17
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.7e-13 Score=117.03 Aligned_cols=135 Identities=21% Similarity=0.316 Sum_probs=116.1
Q ss_pred CCCcch-hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHH-hcccCc
Q 015462 140 KDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQVA 213 (406)
Q Consensus 140 ~~e~~~-~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~-lg~~~~ 213 (406)
+++... ++.|..+|++++|+| +..+++++|+ .+...+ +..++..+|.++.|.|+|++|+..+.. ++...+
T Consensus 29 ~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGF-E~~k~e---i~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 29 EEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGF-EPKKEE---ILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred HHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCC-CcchHH---HHHHHHhhhhccCceechHHHHHHHHHHHhccCc
Confidence 333334 789999999999999 6667788898 454555 889999999999999999999999776 788789
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcccCccccCchhHHHhhhhccccCCeeeEeeecccCccccccc
Q 015462 214 ANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEGTGNQVMT 287 (406)
Q Consensus 214 ~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def~~~~~~~ 287 (406)
.+++..+|+.+|.|++|.|+..+|+.++..+|+..... .+.++|.++|.++| +.|.-++| ..+|+
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~----El~eMIeEAd~d~d---gevneeEF--~~imk 169 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDE----ELMEMIEEADRDGD---GEVNEEEF--IRIMK 169 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHH----HHHHHHHHhccccc---ccccHHHH--HHHHh
Confidence 99999999999999999999999999999999987763 78999999999998 88888888 56654
No 18
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.44 E-value=4.8e-13 Score=109.81 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=76.2
Q ss_pred EEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccCc
Q 015462 56 ALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGY 129 (406)
Q Consensus 56 l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG~ 129 (406)
|.|+|++|+ ..+.+||||+|.++++..||+++++++||+|||++.|.+.......+.++|+|.+. ++.+|.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~ 78 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS 78 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence 789999996 45788999999999999999999999999999977766655445679999999986 789999
Q ss_pred ceeechhcccCCCcchhhhhhcc
Q 015462 130 CEVDLLEFLTKDSDADSEVFDLL 152 (406)
Q Consensus 130 ~~l~L~~lLs~~e~~~~e~F~~~ 152 (406)
+.+++.+++........++|.+.
T Consensus 79 ~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 79 LTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred EEEEHHHhhccccceeeeeEecC
Confidence 99999998755311114556654
No 19
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.43 E-value=6.6e-13 Score=112.53 Aligned_cols=101 Identities=19% Similarity=0.295 Sum_probs=80.9
Q ss_pred EEEEEEEEEEE------c--CCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCc
Q 015462 54 GIALLTLISAE------M--KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSN 125 (406)
Q Consensus 54 g~l~v~v~~a~------~--~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D 125 (406)
|+|.|+|++|+ . ....||||+|.++.+.++|+++++++||+|||+|.|.+.......+.++|||++.++.++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 78999999996 3 457799999999999999999999999999996666555434678999999999999999
Q ss_pred ccCcceeechhcccCCCcch-hhhhhccCC
Q 015462 126 LEGYCEVDLLEFLTKDSDAD-SEVFDLLDP 154 (406)
Q Consensus 126 ~iG~~~l~L~~lLs~~e~~~-~e~F~~~D~ 154 (406)
++|.+.+++.++........ ..+|.+.+.
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~ 110 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKST 110 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCc
Confidence 99999999999874221111 345555444
No 20
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.43 E-value=4.7e-13 Score=112.00 Aligned_cols=87 Identities=21% Similarity=0.355 Sum_probs=72.9
Q ss_pred EEEEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCC-CCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcc
Q 015462 54 GIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDN-TDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (406)
Q Consensus 54 g~l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~-tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~ 126 (406)
|.|.|+|++|+ ..+.+||||+|.++.+..+|+++.+ ++||+|||.+.|.+.......+.++|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 78999999996 3567899999999999999999754 799999996666554444567999999999876 899
Q ss_pred cCcceeechhcccCC
Q 015462 127 EGYCEVDLLEFLTKD 141 (406)
Q Consensus 127 iG~~~l~L~~lLs~~ 141 (406)
+|.+.+++.+++...
T Consensus 80 iG~~~~~l~~~~~~~ 94 (118)
T cd08681 80 IGDTEVDLSPALKEG 94 (118)
T ss_pred eEEEEEecHHHhhcC
Confidence 999999999986544
No 21
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.43 E-value=5.7e-13 Score=112.14 Aligned_cols=99 Identities=18% Similarity=0.196 Sum_probs=78.5
Q ss_pred EEEEEEEEEE------cCCCCCeEEEEEecC-ceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCccc
Q 015462 55 IALLTLISAE------MKFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLE 127 (406)
Q Consensus 55 ~l~v~v~~a~------~~~~~dP~v~vs~g~-k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~i 127 (406)
+|.|+|++|+ ..+.+||||++.++. +.++|+++.+++||+|||+|.|.+.. ....+.|+|||+|.++.++.+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~-~~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED-VTQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecC-CCCeEEEEEEeCCCCCCCcce
Confidence 4889999996 245789999999976 68899999999999999966555433 356799999999999999999
Q ss_pred CcceeechhcccCCCcchhhhhhccCCCC
Q 015462 128 GYCEVDLLEFLTKDSDADSEVFDLLDPSS 156 (406)
Q Consensus 128 G~~~l~L~~lLs~~e~~~~e~F~~~D~d~ 156 (406)
|.+.+++.++...... ...+.+.+..+
T Consensus 80 G~~~~~l~~l~~~~~~--~~~~~L~~~~~ 106 (121)
T cd04042 80 GSAFVDLSTLELNKPT--EVKLKLEDPNS 106 (121)
T ss_pred EEEEEEHHHcCCCCCe--EEEEECCCCCC
Confidence 9999999998754443 23455555443
No 22
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.42 E-value=6.8e-13 Score=109.99 Aligned_cols=101 Identities=19% Similarity=0.191 Sum_probs=80.4
Q ss_pred cEEEEEEEEEEE--cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCC----CceeEEEEeeccccCCCcc
Q 015462 53 AGIALLTLISAE--MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNG----PHVARISVFETNRLSKSNL 126 (406)
Q Consensus 53 ~g~l~v~v~~a~--~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~----~~~l~fsV~D~D~~s~~D~ 126 (406)
.-.|.|+|++|+ .++..||||+|+++++..+|+++++++||.|||+|.|.+.... ...+.|+|+|.+.++.++.
T Consensus 3 ~~~l~V~v~~a~~L~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~ 82 (111)
T cd04011 3 DFQVRVRVIEARQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTL 82 (111)
T ss_pred cEEEEEEEEEcccCCCCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCc
Confidence 457899999997 3677899999999999999999999999999995555432211 3468999999999999999
Q ss_pred cCcceeechhcccCCCcch-hhhhhccC
Q 015462 127 EGYCEVDLLEFLTKDSDAD-SEVFDLLD 153 (406)
Q Consensus 127 iG~~~l~L~~lLs~~e~~~-~e~F~~~D 153 (406)
+|.+.+++.++........ ..+|.+.|
T Consensus 83 iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 83 IGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cEEEEECCccccCCCCCcceEEEEEeeC
Confidence 9999999999876544433 45555544
No 23
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.41 E-value=1.1e-12 Score=114.66 Aligned_cols=101 Identities=23% Similarity=0.223 Sum_probs=80.2
Q ss_pred EEEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCC-CCCCcccceEEEEeeeCCCceeEEEEeeccccCCCccc
Q 015462 55 IALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDN-TDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLE 127 (406)
Q Consensus 55 ~l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~-tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~i 127 (406)
.|.|+|++|+ ..+.+||||+|.++.+..+|+++.+ ++||+|||.|.|.+.......+.+.|+|++.++.++++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 3789999997 3467899999999999999999876 69999999766655433345789999999999999999
Q ss_pred CcceeechhcccCCCc-ch-hhhhhccCCC
Q 015462 128 GYCEVDLLEFLTKDSD-AD-SEVFDLLDPS 155 (406)
Q Consensus 128 G~~~l~L~~lLs~~e~-~~-~e~F~~~D~d 155 (406)
|.+.+++.++...... .. ..+|.+.+..
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~ 110 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPG 110 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCC
Confidence 9999999998653222 12 5677776654
No 24
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.41 E-value=9.9e-13 Score=110.27 Aligned_cols=103 Identities=22% Similarity=0.295 Sum_probs=81.6
Q ss_pred EEEEEEEEEEE----c--------CCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeecccc
Q 015462 54 GIALLTLISAE----M--------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRL 121 (406)
Q Consensus 54 g~l~v~v~~a~----~--------~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~ 121 (406)
|+|.|+|++|+ . .+.+||||+|.++.+.++|+++++++||+|||+|.+.+.......+.++|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 78999999996 1 14679999999999999999999999999999776665544467799999999988
Q ss_pred CCCcccCcceeechhcccCCCcchhhhhhccCCCCCcch
Q 015462 122 SKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSSSNKI 160 (406)
Q Consensus 122 s~~D~iG~~~l~L~~lLs~~e~~~~e~F~~~D~d~dG~I 160 (406)
.++++|.+.+++.++...... ..+|.+.+. ..|.+
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~--~~w~~L~~~-~~G~~ 115 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFI--DEWLPLEDV-KSGRL 115 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCcc--ceEEECcCC-CCceE
Confidence 889999999999998754332 345555443 34554
No 25
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.41 E-value=9.9e-13 Score=109.68 Aligned_cols=86 Identities=19% Similarity=0.339 Sum_probs=73.2
Q ss_pred EEEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccC
Q 015462 55 IALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEG 128 (406)
Q Consensus 55 ~l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG 128 (406)
+|.|+|++|+ ..+..||||++.++++..+|+++++++||.|||+|.|.+.......+.++|||++.++.++.+|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 5789999996 2456799999999999999999999999999996655444333577999999999999999999
Q ss_pred cceeechhcccC
Q 015462 129 YCEVDLLEFLTK 140 (406)
Q Consensus 129 ~~~l~L~~lLs~ 140 (406)
.+.+++.++...
T Consensus 81 ~~~~~l~~l~~~ 92 (116)
T cd08376 81 RCEIDLSALPRE 92 (116)
T ss_pred EEEEeHHHCCCC
Confidence 999999987643
No 26
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.41 E-value=8.1e-13 Score=111.56 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=72.4
Q ss_pred cEEEEEEEEEEE-c----CCCCCeEEEEEec-----CceeEeeecCCCCCCcccceEEEEe-e--eCCCceeEEEEeecc
Q 015462 53 AGIALLTLISAE-M----KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLL-E--TNGPHVARISVFETN 119 (406)
Q Consensus 53 ~g~l~v~v~~a~-~----~~~~dP~v~vs~g-----~k~~kT~vi~~tLnP~wne~~~~~~-e--~~~~~~l~fsV~D~D 119 (406)
.|.|.|+|++|+ + +..+||||+|.+. ..+.||+++++++||+|||+|.|.+ . ......+.++|||+|
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 789999999996 2 4567999999985 3578999999999999999555532 2 113567999999999
Q ss_pred ccCCCcccCcceeechhcccC
Q 015462 120 RLSKSNLEGYCEVDLLEFLTK 140 (406)
Q Consensus 120 ~~s~~D~iG~~~l~L~~lLs~ 140 (406)
.+++++++|.+.+++.++...
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~ 112 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLS 112 (122)
T ss_pred CCcCCcEEEEEEEeccccccC
Confidence 999999999999999987643
No 27
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.40 E-value=8.3e-13 Score=111.35 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=77.7
Q ss_pred EEEEEEEEE-c-CCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccCcceee
Q 015462 56 ALLTLISAE-M-KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVD 133 (406)
Q Consensus 56 l~v~v~~a~-~-~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG~~~l~ 133 (406)
|.|+|++|+ + ...+||||+|.++.+..||+++++++||+|||+|.|.........+.|+|||+|.+ .+|++|.+.++
T Consensus 2 L~V~Vi~a~~L~~~~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~~i~ 80 (121)
T cd08378 2 LYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGVCFD 80 (121)
T ss_pred EEEEEEEecCCCcccCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeEEEE
Confidence 789999997 1 11789999999999999999999999999999555544332456799999999987 88999999999
Q ss_pred chhcccCCCcc--h-hhhhhccCCCC
Q 015462 134 LLEFLTKDSDA--D-SEVFDLLDPSS 156 (406)
Q Consensus 134 L~~lLs~~e~~--~-~e~F~~~D~d~ 156 (406)
+.++....... . ..+|.+.+..+
T Consensus 81 l~~l~~~~~~~~~~~~~W~~L~~~~~ 106 (121)
T cd08378 81 LSEVPTRVPPDSPLAPQWYRLEDKKG 106 (121)
T ss_pred hHhCcCCCCCCCCCCcceEEccCCCC
Confidence 99986433211 1 46677666543
No 28
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.39 E-value=1.7e-12 Score=112.67 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=73.5
Q ss_pred cccCCccEEEEEEEEEEE-c------CCCCCeEEEEEe--cC---ceeEeeecCCCCCCcccceEEEEeeeCCCceeEEE
Q 015462 47 LNEEDFAGIALLTLISAE-M------KFKDKWLACVSL--GE---QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARIS 114 (406)
Q Consensus 47 ~~~~~~~g~l~v~v~~a~-~------~~~~dP~v~vs~--g~---k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fs 114 (406)
++.....|.|.|+|++|+ + .+.+||||++.+ ++ .+.||+++++++||+|||+|.|.+. .....+.++
T Consensus 22 lsl~y~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~ 100 (146)
T cd04028 22 LGLYDKKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVI 100 (146)
T ss_pred EEEEeCCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEE
Confidence 344445799999999996 1 235799999998 32 3679999999999999996666555 356789999
Q ss_pred Ee-eccccCCCcccCcceeechhc
Q 015462 115 VF-ETNRLSKSNLEGYCEVDLLEF 137 (406)
Q Consensus 115 V~-D~D~~s~~D~iG~~~l~L~~l 137 (406)
|| |++.+++++++|.+.+++.++
T Consensus 101 V~~d~~~~~~~~~iG~~~i~L~~l 124 (146)
T cd04028 101 VWGDYGRMDKKVFMGVAQILLDDL 124 (146)
T ss_pred EEeCCCCCCCCceEEEEEEEcccc
Confidence 99 688899999999999999886
No 29
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.38 E-value=2.7e-12 Score=108.04 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=81.0
Q ss_pred EEEEEEEEEEE------cCCCCCeEEEEEecC-ceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcc
Q 015462 54 GIALLTLISAE------MKFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (406)
Q Consensus 54 g~l~v~v~~a~------~~~~~dP~v~vs~g~-k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~ 126 (406)
|+|.|+|++|+ ..+.+||||+|.++. +..+|+++++++||+|||.+.+.+.. ....+.++|||++.++.+++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTS-PNQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecC-CCCEEEEEEEECCCCCCCCe
Confidence 78999999996 356889999999965 57899999999999999965554433 34679999999999999999
Q ss_pred cCcceeechhcccCCCcchhhhhhccCCC
Q 015462 127 EGYCEVDLLEFLTKDSDADSEVFDLLDPS 155 (406)
Q Consensus 127 iG~~~l~L~~lLs~~e~~~~e~F~~~D~d 155 (406)
+|.+.+++.+++.... ...|.++|.+
T Consensus 80 IG~~~~~l~~l~~~~~---~~~~~~~~~~ 105 (120)
T cd04045 80 LGSVEINVSDLIKKNE---DGKYVEYDDE 105 (120)
T ss_pred eeEEEEeHHHhhCCCC---CceEEecCCC
Confidence 9999999999886522 4677777766
No 30
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.37 E-value=3e-12 Score=107.82 Aligned_cols=90 Identities=24% Similarity=0.393 Sum_probs=76.4
Q ss_pred cEEEEEEEEEEE-------cCCCCCeEEEEEecC--ceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCC
Q 015462 53 AGIALLTLISAE-------MKFKDKWLACVSLGE--QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSK 123 (406)
Q Consensus 53 ~g~l~v~v~~a~-------~~~~~dP~v~vs~g~--k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~ 123 (406)
.|+|.|+|++|+ ....+||||+|.++. +.++|+++++++||+|||.+.+.+. .....+.|+|||.+..+.
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCC
Confidence 489999999996 123579999999987 8899999999999999996666554 346679999999999999
Q ss_pred CcccCcceeechhcccCCCc
Q 015462 124 SNLEGYCEVDLLEFLTKDSD 143 (406)
Q Consensus 124 ~D~iG~~~l~L~~lLs~~e~ 143 (406)
++.+|.+.+++.++......
T Consensus 80 d~~iG~~~~~l~~l~~~~~~ 99 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQ 99 (124)
T ss_pred CceeEEEEEEHHHhccCccc
Confidence 99999999999998865554
No 31
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.37 E-value=2.8e-12 Score=108.22 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=72.6
Q ss_pred EEEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccC
Q 015462 55 IALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEG 128 (406)
Q Consensus 55 ~l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG 128 (406)
.|.|+|++|+ ....+||||.|.++.+..+|+++++++||+|||+|.|.+.......+.|+|||++.++.++++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 3789999996 2356799999999999999999999999999996655544433567999999999999999999
Q ss_pred cceeechhcccC
Q 015462 129 YCEVDLLEFLTK 140 (406)
Q Consensus 129 ~~~l~L~~lLs~ 140 (406)
.+.+++.++...
T Consensus 81 ~~~~~l~~l~~~ 92 (123)
T cd04025 81 KVVFSIQTLQQA 92 (123)
T ss_pred EEEEEHHHcccC
Confidence 999999987643
No 32
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.36 E-value=1.8e-12 Score=110.09 Aligned_cols=98 Identities=13% Similarity=0.217 Sum_probs=75.3
Q ss_pred EEEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCC---CceeEEEEeeccccC-CC
Q 015462 55 IALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNG---PHVARISVFETNRLS-KS 124 (406)
Q Consensus 55 ~l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~---~~~l~fsV~D~D~~s-~~ 124 (406)
.|.|+|++|+ ..+.+||||+|.++.+..||+++.+++||+|||.|.|.+.... ...+.|+|||.+.++ .+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 3789999996 3466799999999999999999999999999995555433211 246899999999887 89
Q ss_pred cccCcceeechhcccCCCcchhhhhhccC
Q 015462 125 NLEGYCEVDLLEFLTKDSDADSEVFDLLD 153 (406)
Q Consensus 125 D~iG~~~l~L~~lLs~~e~~~~e~F~~~D 153 (406)
+++|.+.+++.++....+.. ..+|.+-.
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~-~~w~~L~~ 108 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAV-VQRYPLEK 108 (127)
T ss_pred CeeeEEEEcHHHcCCCCCcc-ceEeEeee
Confidence 99999999999987333221 34455433
No 33
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.36 E-value=2.4e-12 Score=109.12 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=73.6
Q ss_pred CCccEEEEEEEEEEE-------cCCCCCeEEEEEec-----CceeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEE
Q 015462 50 EDFAGIALLTLISAE-------MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISV 115 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~-------~~~~~dP~v~vs~g-----~k~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV 115 (406)
....|.|.|+|++|+ ..+.+||||+|.+. ..+.||+++++++||+|||+|.|.+..+ ....+.|+|
T Consensus 11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 456899999999996 13578999999873 2457999999999999999666654432 245699999
Q ss_pred eeccccCCCcccCcceeechhcccC
Q 015462 116 FETNRLSKSNLEGYCEVDLLEFLTK 140 (406)
Q Consensus 116 ~D~D~~s~~D~iG~~~l~L~~lLs~ 140 (406)
||+|.+++++++|.+.+++..+-..
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~~~ 115 (125)
T cd04029 91 WHYDRFGRNTFLGEVEIPLDSWNFD 115 (125)
T ss_pred EECCCCCCCcEEEEEEEeCCccccc
Confidence 9999999999999999999887443
No 34
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.36 E-value=3.3e-12 Score=106.85 Aligned_cols=99 Identities=18% Similarity=0.252 Sum_probs=78.7
Q ss_pred EEEEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCccc
Q 015462 54 GIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLE 127 (406)
Q Consensus 54 g~l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~i 127 (406)
|.|.|+|++|+ ....+||||+|.++....+|+++++++||.|||++.+.+.. ....+.|+|||++.++.++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD-IHDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC-cCCEEEEEEEECCCCCCCcee
Confidence 78999999996 35678999999999888999999999999999955544332 256799999999999999999
Q ss_pred CcceeechhcccCCCcchhhhhhccCCCCC
Q 015462 128 GYCEVDLLEFLTKDSDADSEVFDLLDPSSS 157 (406)
Q Consensus 128 G~~~l~L~~lLs~~e~~~~e~F~~~D~d~d 157 (406)
|.+.+++.++.... ..+|.+.+....
T Consensus 80 G~~~~~l~~~~~~~----~~~~~l~~~~~~ 105 (119)
T cd08377 80 GKVAIPLLSIKNGE----RKWYALKDKKLR 105 (119)
T ss_pred eEEEEEHHHCCCCC----ceEEECcccCCC
Confidence 99999998875332 245555554433
No 35
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.35 E-value=3.5e-12 Score=106.97 Aligned_cols=85 Identities=14% Similarity=0.241 Sum_probs=70.2
Q ss_pred EEEEEEEEE------cCCCCCeEEEEEec---CceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcc
Q 015462 56 ALLTLISAE------MKFKDKWLACVSLG---EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (406)
Q Consensus 56 l~v~v~~a~------~~~~~dP~v~vs~g---~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~ 126 (406)
|.|+|++|+ ..+.+||||+|.++ .+..||+++++++||+|||+|.|.+.......+.|+|||+|.+ .++.
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999996 24577999999985 4678999999999999999666655443455689999999998 8999
Q ss_pred cCcceeechhcccCC
Q 015462 127 EGYCEVDLLEFLTKD 141 (406)
Q Consensus 127 iG~~~l~L~~lLs~~ 141 (406)
+|.+.+++.++....
T Consensus 81 iG~~~~~l~~l~~g~ 95 (119)
T cd04036 81 LGTVLFDVSKLKLGE 95 (119)
T ss_pred cEEEEEEHHHCCCCC
Confidence 999999999876443
No 36
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.35 E-value=3.3e-12 Score=111.59 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=71.4
Q ss_pred EEEEEEEEE----cC----------------CCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeee-CCCceeEEE
Q 015462 56 ALLTLISAE----MK----------------FKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLET-NGPHVARIS 114 (406)
Q Consensus 56 l~v~v~~a~----~~----------------~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~-~~~~~l~fs 114 (406)
|.|+|++|+ +. ..+||||+|.++.+..||+++++++||+|||++.|.+.. .....+.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 678888886 21 257999999999999999999999999999966554332 234579999
Q ss_pred EeeccccCCCcccCcceeechhcccCC
Q 015462 115 VFETNRLSKSNLEGYCEVDLLEFLTKD 141 (406)
Q Consensus 115 V~D~D~~s~~D~iG~~~l~L~~lLs~~ 141 (406)
|||+|.++.+|.+|.+.+++.++....
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 999999999999999999999887544
No 37
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.34 E-value=7e-12 Score=105.52 Aligned_cols=96 Identities=11% Similarity=0.111 Sum_probs=72.7
Q ss_pred cEEEEEEEEEEE-c--CCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccCc
Q 015462 53 AGIALLTLISAE-M--KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGY 129 (406)
Q Consensus 53 ~g~l~v~v~~a~-~--~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG~ 129 (406)
.|.|.|+|++|+ + ....+|||+|.+|+++.+|++.+. .||+|||+|.|..+. ....+.++|||+|.+ .+|++|.
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~-~~~~L~v~V~dkd~~-~DD~lG~ 77 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINR-LDLGLVIELWNKGLI-WDTLVGT 77 (127)
T ss_pred CceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcC-CCCEEEEEEEeCCCc-CCCceEE
Confidence 368999999997 2 123389999999999999999987 599999944444333 334499999999954 9999999
Q ss_pred ceeechhcccCCCcchhhhhhc
Q 015462 130 CEVDLLEFLTKDSDADSEVFDL 151 (406)
Q Consensus 130 ~~l~L~~lLs~~e~~~~e~F~~ 151 (406)
+.++|.+++..+..-..++|.+
T Consensus 78 v~i~L~~v~~~~~~~~~~Wy~L 99 (127)
T cd08394 78 VWIPLSTIRQSNEEGPGEWLTL 99 (127)
T ss_pred EEEEhHHcccCCCCCCCccEec
Confidence 9999999876543211344444
No 38
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.34 E-value=3.2e-12 Score=108.81 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=72.5
Q ss_pred CCccEEEEEEEEEEE------c-CCCCCeEEEEEec-----CceeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEE
Q 015462 50 EDFAGIALLTLISAE------M-KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISV 115 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~-~~~~dP~v~vs~g-----~k~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV 115 (406)
....+.|.|+|++|+ . .+..||||++.+. ..+.||+++++++||+|||+|.|.+..+ ....+.+.|
T Consensus 11 ~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 11 NFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred eCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 345689999999996 1 2677999999873 3477999999999999999665554332 146799999
Q ss_pred eeccccCCCcccCcceeechhcc
Q 015462 116 FETNRLSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 116 ~D~D~~s~~D~iG~~~l~L~~lL 138 (406)
||.+.+++++++|.+.|++.++-
T Consensus 91 ~~~~~~~~~~~lG~~~i~L~~~~ 113 (128)
T cd08392 91 WHSRTLKRRVFLGEVLIPLADWD 113 (128)
T ss_pred EeCCCCcCcceEEEEEEEcCCcc
Confidence 99999999999999999998873
No 39
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.33 E-value=2.4e-12 Score=109.16 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=71.4
Q ss_pred CccEEEEEEEEEEE----c---CCCCCeEEEEEec-----CceeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEEe
Q 015462 51 DFAGIALLTLISAE----M---KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVF 116 (406)
Q Consensus 51 ~~~g~l~v~v~~a~----~---~~~~dP~v~vs~g-----~k~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV~ 116 (406)
...+.|.|+|++|+ + .+.+||||+|.+. ..+.||+++++++||+|||+|.|.+... ....+.|+||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 34688999999996 2 2578999999883 3457999999999999999655544321 2457999999
Q ss_pred eccccCCCcccCcceeechhcc
Q 015462 117 ETNRLSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 117 D~D~~s~~D~iG~~~l~L~~lL 138 (406)
|.|.+++++++|.+.+++.++-
T Consensus 92 d~~~~~~~~~iG~~~i~L~~~~ 113 (125)
T cd08393 92 HRDSLGRNSFLGEVEVDLGSWD 113 (125)
T ss_pred eCCCCCCCcEeEEEEEecCccc
Confidence 9999999999999999999873
No 40
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.33 E-value=4.9e-12 Score=106.87 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=75.5
Q ss_pred ccCCccEEEEEEEEEEE------cCCCCCeEEEEEec---CceeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEEe
Q 015462 48 NEEDFAGIALLTLISAE------MKFKDKWLACVSLG---EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVF 116 (406)
Q Consensus 48 ~~~~~~g~l~v~v~~a~------~~~~~dP~v~vs~g---~k~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV~ 116 (406)
.-.+..|.|.|+|++|+ ..+..||||.|.+. .+.+||+++++++||+|||+|.|.+... ....+.++||
T Consensus 10 ~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 10 EYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred EECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 33556799999999996 35667999999972 5678999999999999999554443321 1457999999
Q ss_pred eccccCCCcccCcceeechhcccCC
Q 015462 117 ETNRLSKSNLEGYCEVDLLEFLTKD 141 (406)
Q Consensus 117 D~D~~s~~D~iG~~~l~L~~lLs~~ 141 (406)
|.+.+++++++|.+.+++.++...+
T Consensus 90 d~~~~~~~~~iG~~~i~l~~~~~~~ 114 (124)
T cd08387 90 DFDQFSRDECIGVVELPLAEVDLSE 114 (124)
T ss_pred ECCCCCCCceeEEEEEecccccCCC
Confidence 9999999999999999999886444
No 41
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.33 E-value=7.3e-12 Score=106.26 Aligned_cols=83 Identities=13% Similarity=0.148 Sum_probs=69.9
Q ss_pred cEEEEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcc
Q 015462 53 AGIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (406)
Q Consensus 53 ~g~l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~ 126 (406)
.++|.|+|++|+ ..+.+||||++.++.+.++|+++++++||+|||.+.|.... ....+.++|||++.++ +++
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~i~V~d~~~~~-d~~ 79 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKK-PRSPIKIQVWNSNLLC-DEF 79 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecC-CCCEEEEEEEECCCCC-CCc
Confidence 579999999996 34678999999999999999999999999999955443332 3567999999999875 799
Q ss_pred cCcceeechhc
Q 015462 127 EGYCEVDLLEF 137 (406)
Q Consensus 127 iG~~~l~L~~l 137 (406)
+|.+.+++.+.
T Consensus 80 lG~~~~~l~~~ 90 (126)
T cd04046 80 LGQATLSADPN 90 (126)
T ss_pred eEEEEEecccC
Confidence 99999998764
No 42
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.32 E-value=7.1e-12 Score=107.36 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=74.1
Q ss_pred CccEEEEEEEEEEE------cCCCCCeEEEEEec-------CceeEeeecCCCCCCcccceEEEEeeeC----CCceeEE
Q 015462 51 DFAGIALLTLISAE------MKFKDKWLACVSLG-------EQTCRTAISDNTDKPIWNSEKKLLLETN----GPHVARI 113 (406)
Q Consensus 51 ~~~g~l~v~v~~a~------~~~~~dP~v~vs~g-------~k~~kT~vi~~tLnP~wne~~~~~~e~~----~~~~l~f 113 (406)
...+.|.|+|++|+ ..+..||||+|.+. ....||+++++++||+|||+|.|.+... ....+.|
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 34678999999996 24578999999884 4578999999999999999666654331 2456899
Q ss_pred EEeeccccCCCcccCcceeechhcccCC
Q 015462 114 SVFETNRLSKSNLEGYCEVDLLEFLTKD 141 (406)
Q Consensus 114 sV~D~D~~s~~D~iG~~~l~L~~lLs~~ 141 (406)
+|||++.+++++++|.+.+++.++...+
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCccc
Confidence 9999999999999999999999986433
No 43
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.31 E-value=8.9e-12 Score=105.26 Aligned_cols=89 Identities=18% Similarity=0.279 Sum_probs=74.3
Q ss_pred EEEEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCC-CCCCcccceEEEEeeeC---CCceeEEEEeeccccCC
Q 015462 54 GIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDN-TDKPIWNSEKKLLLETN---GPHVARISVFETNRLSK 123 (406)
Q Consensus 54 g~l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~-tLnP~wne~~~~~~e~~---~~~~l~fsV~D~D~~s~ 123 (406)
|.|.|+|++|+ .....||||+|+++.+..+|+++++ ++||+|||++.|.+... ....+.++|||.+.+..
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 78999999996 3457899999999999999999874 89999999665555442 13568999999999999
Q ss_pred CcccCcceeechhcccCCC
Q 015462 124 SNLEGYCEVDLLEFLTKDS 142 (406)
Q Consensus 124 ~D~iG~~~l~L~~lLs~~e 142 (406)
++++|.+.+++.+++..+.
T Consensus 81 d~~iG~~~i~l~~l~~~~~ 99 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGV 99 (124)
T ss_pred CCeEEEEEEEhHHhhhCCC
Confidence 9999999999999875443
No 44
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.31 E-value=9e-12 Score=105.65 Aligned_cols=87 Identities=18% Similarity=0.251 Sum_probs=71.9
Q ss_pred EEEEEEEEEc----CCCCCeEEEEEec--CceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccCc
Q 015462 56 ALLTLISAEM----KFKDKWLACVSLG--EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGY 129 (406)
Q Consensus 56 l~v~v~~a~~----~~~~dP~v~vs~g--~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG~ 129 (406)
|.|+|++|+- .+.+||||++.++ .+.+||+++++++||+|||++.|.+.. ....+.|+|||++..+.++++|.
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~lG~ 79 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFLGL 79 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceEEE
Confidence 5799999962 3688999999997 467899999999999999966554432 25679999999999999999999
Q ss_pred ceeechhcccCCCc
Q 015462 130 CEVDLLEFLTKDSD 143 (406)
Q Consensus 130 ~~l~L~~lLs~~e~ 143 (406)
+.+++.++......
T Consensus 80 ~~i~l~~l~~~~~~ 93 (126)
T cd08678 80 AIVPFDELRKNPSG 93 (126)
T ss_pred EEEeHHHhccCCce
Confidence 99999998765444
No 45
>PTZ00183 centrin; Provisional
Probab=99.30 E-value=5.8e-12 Score=110.22 Aligned_cols=131 Identities=23% Similarity=0.327 Sum_probs=103.2
Q ss_pred cCCCcch-hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHh-cccC
Q 015462 139 TKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF-GNQV 212 (406)
Q Consensus 139 s~~e~~~-~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l-g~~~ 212 (406)
++.+... ..+|..+|.+++|.| +..++..++. .+.... +..++..+|.+++|.|+++||..++... ....
T Consensus 12 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~-~~~~~~---~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 12 TEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGF-EPKKEE---IKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHH---HHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC
Confidence 3444445 788999999999999 5555565554 233334 8899999999999999999999988763 3445
Q ss_pred cHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcccCccccCchhHHHhhhhccccCCeeeEeeecccC
Q 015462 213 AANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 213 ~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
..+.++.+|+.+|.|++|.|+.+||..++...+..... ..+..++...|.+++ +.|.+++|
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~----~~~~~~~~~~d~~~~---g~i~~~ef 148 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITD----EELQEMIDEADRNGD---GEISEEEF 148 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCH----HHHHHHHHHhCCCCC---CcCcHHHH
Confidence 66889999999999999999999999999887765443 367778888887777 66888877
No 46
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.30 E-value=9.4e-12 Score=110.28 Aligned_cols=90 Identities=13% Similarity=0.125 Sum_probs=72.0
Q ss_pred CCccEEEEEEEEEEE------cCCCCCeEEEEEe-----cCceeEeeecCCCCCCcccceEEEEee---eCCCceeEEEE
Q 015462 50 EDFAGIALLTLISAE------MKFKDKWLACVSL-----GEQTCRTAISDNTDKPIWNSEKKLLLE---TNGPHVARISV 115 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~~~~~dP~v~vs~-----g~k~~kT~vi~~tLnP~wne~~~~~~e---~~~~~~l~fsV 115 (406)
....|+|.|+|++|+ ..+..||||+|.+ +..++||+++++++||+|||+|.|..- .-....+.++|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 346899999999996 2466799999987 456889999999999999995444211 11234689999
Q ss_pred eeccccCCCcccCcceeechhccc
Q 015462 116 FETNRLSKSNLEGYCEVDLLEFLT 139 (406)
Q Consensus 116 ~D~D~~s~~D~iG~~~l~L~~lLs 139 (406)
||+|.+++++++|.+.+++.++..
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCcccc
Confidence 999999999999999999988643
No 47
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.29 E-value=9.1e-12 Score=103.51 Aligned_cols=78 Identities=19% Similarity=0.354 Sum_probs=63.3
Q ss_pred EEEEEEEEE-cCCCCCeEEEEEec-----CceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeec-------cccC
Q 015462 56 ALLTLISAE-MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFET-------NRLS 122 (406)
Q Consensus 56 l~v~v~~a~-~~~~~dP~v~vs~g-----~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~-------D~~s 122 (406)
|.|+|.+|+ +....||||++.+. ...+||+++++|+||+||| .|.++.+....+.+.|||+ |..+
T Consensus 1 L~V~V~~A~~L~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE--~F~i~l~~s~~L~~~v~d~~~~~~~~d~~~ 78 (118)
T cd08686 1 LNVIVHSAQGFKQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNE--EFEIELEGSQTLRILCYEKCYSKVKLDGEG 78 (118)
T ss_pred CEEEEEeCCCCCCCCCCEEEEEEcCccccceeeeeeeecCCCCCccce--EEEEEeCCCCEEEEEEEEcccccccccccC
Confidence 579999997 66668999999762 2468999999999999999 5555555677899999998 5678
Q ss_pred CCcccCcceeech
Q 015462 123 KSNLEGYCEVDLL 135 (406)
Q Consensus 123 ~~D~iG~~~l~L~ 135 (406)
.++.+|.+.+.+.
T Consensus 79 ~d~~~G~g~i~Ld 91 (118)
T cd08686 79 TDAIMGKGQIQLD 91 (118)
T ss_pred cccEEEEEEEEEC
Confidence 8999988777654
No 48
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.29 E-value=9.6e-12 Score=105.23 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=72.6
Q ss_pred CCccEEEEEEEEEEE------cCCCCCeEEEEEe---c---CceeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEE
Q 015462 50 EDFAGIALLTLISAE------MKFKDKWLACVSL---G---EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISV 115 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~~~~~dP~v~vs~---g---~k~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV 115 (406)
++..|.|.|+|++|+ ..+.+||||++.+ . ...+||+++++++||+|||+|.|.+..+ ....++++|
T Consensus 10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 456789999999996 2456799999986 2 2478999999999999999665544332 256799999
Q ss_pred eeccccCCCcccCcceeechhc
Q 015462 116 FETNRLSKSNLEGYCEVDLLEF 137 (406)
Q Consensus 116 ~D~D~~s~~D~iG~~~l~L~~l 137 (406)
||.+.+++++.+|.+.+++.++
T Consensus 90 ~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 90 CSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred EeCCCCCceeEEEEEEEEhhhc
Confidence 9999999999999999999987
No 49
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.29 E-value=1.1e-11 Score=105.02 Aligned_cols=84 Identities=21% Similarity=0.260 Sum_probs=69.9
Q ss_pred EEEEEEEEEE------cCCCCCeEEEEEecCce--eEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcc
Q 015462 55 IALLTLISAE------MKFKDKWLACVSLGEQT--CRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (406)
Q Consensus 55 ~l~v~v~~a~------~~~~~dP~v~vs~g~k~--~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~ 126 (406)
+|+|.|++|+ ..+..||||+|.++.+. .||.++++++||+|||++.|.........+.++|||+|.++.+++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 4789999996 34678999999998765 578889999999999955554444445679999999999999999
Q ss_pred cCcceeechhcc
Q 015462 127 EGYCEVDLLEFL 138 (406)
Q Consensus 127 iG~~~l~L~~lL 138 (406)
+|.+.+++.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999988764
No 50
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.29 E-value=1.5e-11 Score=103.93 Aligned_cols=84 Identities=21% Similarity=0.331 Sum_probs=70.1
Q ss_pred EEEEEEEEE------cCCCCCeEEEEEec-CceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCC--Ccc
Q 015462 56 ALLTLISAE------MKFKDKWLACVSLG-EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSK--SNL 126 (406)
Q Consensus 56 l~v~v~~a~------~~~~~dP~v~vs~g-~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~--~D~ 126 (406)
|.|+|++|+ ..+.+||||+|.++ .+.+||+++++++||+|||++.|.+. ....+.++|||++.++. +++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~--~~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVG--PSSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeC--CCCEEEEEEEECCCCCCCCCce
Confidence 789999996 24567999999995 78999999999999999995555443 46789999999999876 468
Q ss_pred cCcceeechhcccCC
Q 015462 127 EGYCEVDLLEFLTKD 141 (406)
Q Consensus 127 iG~~~l~L~~lLs~~ 141 (406)
+|.+.+++.+++...
T Consensus 80 lG~~~i~l~~l~~~~ 94 (123)
T cd08382 80 LGCVRIRANAVLPLK 94 (123)
T ss_pred EeEEEEEHHHccccC
Confidence 999999999987543
No 51
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.28 E-value=1.5e-11 Score=103.85 Aligned_cols=91 Identities=22% Similarity=0.219 Sum_probs=73.8
Q ss_pred CCccEEEEEEEEEEE------cCCCCCeEEEEEec---CceeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEEeec
Q 015462 50 EDFAGIALLTLISAE------MKFKDKWLACVSLG---EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFET 118 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~~~~~dP~v~vs~g---~k~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV~D~ 118 (406)
....|.|.|+|++|+ ..+..||||+|.+. .+.+||+++++++||+|||+|.|.+... ....+.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 446789999999996 34567999999873 4678999999999999999555544321 245799999999
Q ss_pred cccCCCcccCcceeechhcccC
Q 015462 119 NRLSKSNLEGYCEVDLLEFLTK 140 (406)
Q Consensus 119 D~~s~~D~iG~~~l~L~~lLs~ 140 (406)
|.++.++++|.+.+++.++...
T Consensus 92 d~~~~~~~lG~~~i~l~~~~~~ 113 (124)
T cd08385 92 DRFSKHDLIGEVRVPLLTVDLG 113 (124)
T ss_pred CCCCCCceeEEEEEecCcccCC
Confidence 9999999999999999987543
No 52
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.28 E-value=1.1e-11 Score=105.52 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=71.5
Q ss_pred CccEEEEEEEEEEE------c-CCCCCeEEEEEec---CceeEeeecCCCCCCcccceEEE-EeeeC--CCceeEEEEee
Q 015462 51 DFAGIALLTLISAE------M-KFKDKWLACVSLG---EQTCRTAISDNTDKPIWNSEKKL-LLETN--GPHVARISVFE 117 (406)
Q Consensus 51 ~~~g~l~v~v~~a~------~-~~~~dP~v~vs~g---~k~~kT~vi~~tLnP~wne~~~~-~~e~~--~~~~l~fsV~D 117 (406)
.-.+.|.|+|++|+ . ++..||||+|.+. ++..||+++++++||+|||+|.| .++.. ....+.+.|||
T Consensus 13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d 92 (128)
T cd08388 13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLS 92 (128)
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence 34689999999996 1 2667999999873 56789999999999999996555 23221 23468999999
Q ss_pred ccccCCCcccCcceeechhccc
Q 015462 118 TNRLSKSNLEGYCEVDLLEFLT 139 (406)
Q Consensus 118 ~D~~s~~D~iG~~~l~L~~lLs 139 (406)
+|.+++++++|.+.+++.++-.
T Consensus 93 ~d~~~~d~~lG~~~i~L~~l~~ 114 (128)
T cd08388 93 FDRYSRDDVIGEVVCPLAGADL 114 (128)
T ss_pred cCCCCCCceeEEEEEeccccCC
Confidence 9999999999999999998743
No 53
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.28 E-value=1.9e-11 Score=102.95 Aligned_cols=83 Identities=18% Similarity=0.272 Sum_probs=68.6
Q ss_pred EEEEEEEEE------cCCCCCeEEEEEecCc-eeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccC
Q 015462 56 ALLTLISAE------MKFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEG 128 (406)
Q Consensus 56 l~v~v~~a~------~~~~~dP~v~vs~g~k-~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG 128 (406)
|.|+|++|+ ..+.+||||+|.++.+ ..||+++++++||+|||.|.+.+.. ....+.|.|||++.++.++++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEEE
Confidence 789999996 3567899999999765 5799999999999999955443322 2467999999999999999999
Q ss_pred cceeechhccc
Q 015462 129 YCEVDLLEFLT 139 (406)
Q Consensus 129 ~~~l~L~~lLs 139 (406)
.+.+++..+..
T Consensus 81 ~~~~~~~~~~~ 91 (121)
T cd04054 81 KVSLTREVISA 91 (121)
T ss_pred EEEEcHHHhcc
Confidence 99999887764
No 54
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.28 E-value=9.2e-12 Score=108.52 Aligned_cols=86 Identities=14% Similarity=0.097 Sum_probs=70.1
Q ss_pred EEEEEEEEEE----cCCCCCeEEEEEecC-----ceeEeeecCCCCCCcccceEEEEeee--------------C-CCce
Q 015462 55 IALLTLISAE----MKFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLLET--------------N-GPHV 110 (406)
Q Consensus 55 ~l~v~v~~a~----~~~~~dP~v~vs~g~-----k~~kT~vi~~tLnP~wne~~~~~~e~--------------~-~~~~ 110 (406)
.|.|+|++|+ ..+.+||||+|.+.. +..||+++++++||+|||+|.|.+.. + ....
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 3789999996 245679999999855 67899999999999999966665520 1 1246
Q ss_pred eEEEEeeccccCCCcccCcceeechhcccC
Q 015462 111 ARISVFETNRLSKSNLEGYCEVDLLEFLTK 140 (406)
Q Consensus 111 l~fsV~D~D~~s~~D~iG~~~l~L~~lLs~ 140 (406)
+.+.|||.+.++.++++|.+.+++..+...
T Consensus 81 L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~ 110 (148)
T cd04010 81 LRVDLWHASMGGGDVFLGEVRIPLRGLDLQ 110 (148)
T ss_pred EEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence 899999999999999999999999987644
No 55
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.27 E-value=1.6e-11 Score=105.73 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=68.3
Q ss_pred CCccEEEEEEEEEEE----cC----CCCCeEEEEEecC-----ceeEeeecCCCCCCcccceEEEEeeeCC----CceeE
Q 015462 50 EDFAGIALLTLISAE----MK----FKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLLETNG----PHVAR 112 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~----~~----~~~dP~v~vs~g~-----k~~kT~vi~~tLnP~wne~~~~~~e~~~----~~~l~ 112 (406)
.+..|.|.|+|++|+ +. +.+||||+|.+.. ++.||+++++++||+||| .|.|.... ...+.
T Consensus 11 ~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE--~f~F~v~~~~L~~~~L~ 88 (138)
T cd08407 11 LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNE--MIMFELPSELLAASSVE 88 (138)
T ss_pred eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCcccc--EEEEECCHHHhCccEEE
Confidence 456789999999996 22 3379999998732 256899999999999999 55554322 45699
Q ss_pred EEEeeccccCCCcccCcceeechh
Q 015462 113 ISVFETNRLSKSNLEGYCEVDLLE 136 (406)
Q Consensus 113 fsV~D~D~~s~~D~iG~~~l~L~~ 136 (406)
|+|+|.|.++++|.+|.+.+++..
T Consensus 89 ~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 89 LEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEEEeCCCCcCcceeceEEecCcC
Confidence 999999999999999999998764
No 56
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.27 E-value=1.1e-11 Score=106.57 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=68.1
Q ss_pred CCccEEEEEEEEEEE------cCCCCCeEEEEEe---cCc--eeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEEe
Q 015462 50 EDFAGIALLTLISAE------MKFKDKWLACVSL---GEQ--TCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVF 116 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~~~~~dP~v~vs~---g~k--~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV~ 116 (406)
.+..+.|.|+|++|+ ..+.+||||+|.+ +++ +.||+++++++||+|||+|.|.+..+ ....+.|+|+
T Consensus 11 ~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~ 90 (136)
T cd08406 11 LPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVA 90 (136)
T ss_pred cCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEE
Confidence 445788999999997 2466799999987 333 56899999999999999555544321 2456999999
Q ss_pred eccccCCCcccCcceeech
Q 015462 117 ETNRLSKSNLEGYCEVDLL 135 (406)
Q Consensus 117 D~D~~s~~D~iG~~~l~L~ 135 (406)
|+|.++++|.+|.+.+...
T Consensus 91 ~~d~~~~~~~iG~v~lg~~ 109 (136)
T cd08406 91 ESTEDGKTPNVGHVIIGPA 109 (136)
T ss_pred eCCCCCCCCeeEEEEECCC
Confidence 9999999999999988654
No 57
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.27 E-value=2.4e-11 Score=103.81 Aligned_cols=105 Identities=22% Similarity=0.259 Sum_probs=78.1
Q ss_pred EEEEEEEEEE------cCCCCCeEEEEEecCc-------eeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeecccc
Q 015462 55 IALLTLISAE------MKFKDKWLACVSLGEQ-------TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRL 121 (406)
Q Consensus 55 ~l~v~v~~a~------~~~~~dP~v~vs~g~k-------~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~ 121 (406)
.|.|+|++|+ ..+..||||+|.+... ..+|+++++++||+|||+|.|.+.. ....+.|+|||++.+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence 3789999996 3457899999998654 5799999999999999955554432 245689999999999
Q ss_pred CCCcccCcceeechhcccCCCcc---h-hhhhhccCCCCCcch
Q 015462 122 SKSNLEGYCEVDLLEFLTKDSDA---D-SEVFDLLDPSSSNKI 160 (406)
Q Consensus 122 s~~D~iG~~~l~L~~lLs~~e~~---~-~e~F~~~D~d~dG~I 160 (406)
+.++++|.+.+++.++....... . ..+|.+-.....|..
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 122 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRV 122 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcc
Confidence 99999999999999987654321 1 345554433333433
No 58
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.27 E-value=2.2e-11 Score=102.67 Aligned_cols=84 Identities=10% Similarity=0.139 Sum_probs=68.7
Q ss_pred EEEEEEEEE----c---CCCCCeEEEEEecCc-eeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCccc
Q 015462 56 ALLTLISAE----M---KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLE 127 (406)
Q Consensus 56 l~v~v~~a~----~---~~~~dP~v~vs~g~k-~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~i 127 (406)
|.|+|++|+ + .+.+||||.|.++.+ .++|+++++++||+|||+|.|.+.. ....+.|.|||++.++.++.+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~-~~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPR-TFRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCC-CCCEEEEEEEECCCCCCCceE
Confidence 678999996 2 246799999999765 6899999999999999955444332 246799999999999999999
Q ss_pred CcceeechhcccC
Q 015462 128 GYCEVDLLEFLTK 140 (406)
Q Consensus 128 G~~~l~L~~lLs~ 140 (406)
|.+.+++.++...
T Consensus 81 G~~~i~l~~l~~~ 93 (121)
T cd08401 81 GKVAIKKEDLHKY 93 (121)
T ss_pred EEEEEEHHHccCC
Confidence 9999999987643
No 59
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.27 E-value=2.4e-11 Score=102.99 Aligned_cols=86 Identities=24% Similarity=0.356 Sum_probs=72.9
Q ss_pred EEEEEEEEEEc-----CCCCCeEEEEEecCc-eeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccC
Q 015462 55 IALLTLISAEM-----KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEG 128 (406)
Q Consensus 55 ~l~v~v~~a~~-----~~~~dP~v~vs~g~k-~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG 128 (406)
.|.|+|++|+. ...+||||.|.++.+ ..+|+++++++||+|||+|.|. ......+.|+|||++.++.++.+|
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~--~~~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVL--VTPQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEE--eCCCCEEEEEEEeCCCCCCCcEEE
Confidence 68999999962 456799999999887 8999999999999999955554 444567999999999999999999
Q ss_pred cceeechhcccCCC
Q 015462 129 YCEVDLLEFLTKDS 142 (406)
Q Consensus 129 ~~~l~L~~lLs~~e 142 (406)
.+.+++.+++....
T Consensus 81 ~~~i~l~~l~~~~~ 94 (125)
T cd04021 81 EASLDLSDILKNHN 94 (125)
T ss_pred EEEEEHHHhHhhcC
Confidence 99999999875433
No 60
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.26 E-value=2.7e-11 Score=106.90 Aligned_cols=86 Identities=17% Similarity=0.331 Sum_probs=66.3
Q ss_pred CCCeEEEEEecC-ceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccCcceeechhcccCCCcchh
Q 015462 68 KDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADS 146 (406)
Q Consensus 68 ~~dP~v~vs~g~-k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG~~~l~L~~lLs~~e~~~~ 146 (406)
.+||||+|.++. +..||+++++++||+|||+|.+.+.. ....+.|.|+|+|.++ ++.+|.+.+++.++...... .
T Consensus 57 ~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE~F~~~~~~-~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~--~ 132 (158)
T cd04015 57 TSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAH-YASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPV--E 132 (158)
T ss_pred CcCeEEEEEECCeEeeEEEEeCCCCCCccceEEEEEccC-CCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCc--c
Confidence 369999999986 45799999999999999976665443 3457899999999875 58999999999998754433 3
Q ss_pred hhhhccCCCCC
Q 015462 147 EVFDLLDPSSS 157 (406)
Q Consensus 147 e~F~~~D~d~d 157 (406)
.+|.+.+.++.
T Consensus 133 ~w~~L~~~~~~ 143 (158)
T cd04015 133 GWLPILDSNGK 143 (158)
T ss_pred eEEECcCCCCC
Confidence 55666665433
No 61
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.25 E-value=2.2e-11 Score=102.77 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=71.2
Q ss_pred CCccEEEEEEEEEEE------cCCCCCeEEEEEecC-----ceeEeeecCCCCCCcccceEEEEe-eeC--CCceeEEEE
Q 015462 50 EDFAGIALLTLISAE------MKFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLL-ETN--GPHVARISV 115 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~~~~~dP~v~vs~g~-----k~~kT~vi~~tLnP~wne~~~~~~-e~~--~~~~l~fsV 115 (406)
....|+|.|+|++|+ .....||||+|.+.. ++.||+++++++||+|||+|.|.. ... ....+.|+|
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 12 DKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 456789999999996 345679999999853 678999999999999999554432 111 245699999
Q ss_pred eeccccCCCcccCcceeechhc
Q 015462 116 FETNRLSKSNLEGYCEVDLLEF 137 (406)
Q Consensus 116 ~D~D~~s~~D~iG~~~l~L~~l 137 (406)
||++.++.++++|.+.+++.+.
T Consensus 92 ~d~~~~~~~~~iG~~~i~l~~~ 113 (125)
T cd04031 92 WDYDRDGENDFLGEVVIDLADA 113 (125)
T ss_pred EeCCCCCCCcEeeEEEEecccc
Confidence 9999999999999999999873
No 62
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.25 E-value=1.7e-11 Score=103.02 Aligned_cols=90 Identities=12% Similarity=0.118 Sum_probs=70.5
Q ss_pred ccEEEEEEEEEEE----c-CCCCCeEEEEEec-----CceeEeeecCCCCCCcccceEEEEeeeC-CCceeEEEEeeccc
Q 015462 52 FAGIALLTLISAE----M-KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN-GPHVARISVFETNR 120 (406)
Q Consensus 52 ~~g~l~v~v~~a~----~-~~~~dP~v~vs~g-----~k~~kT~vi~~tLnP~wne~~~~~~e~~-~~~~l~fsV~D~D~ 120 (406)
..|.|.|+|++|+ + .+.+||||.|.+. ..+.||+++++++||+|||+|.|.+..+ ....+.++|||++.
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 4688999999997 2 3457999999884 2466999999999999999555543321 23468899999998
Q ss_pred cC-CCcccCcceeechhcccCC
Q 015462 121 LS-KSNLEGYCEVDLLEFLTKD 141 (406)
Q Consensus 121 ~s-~~D~iG~~~l~L~~lLs~~ 141 (406)
.+ .++++|.+.+++.++...+
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~~~ 111 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVNQK 111 (119)
T ss_pred CcCCCEEEEEEEecHHHhccCc
Confidence 76 4789999999999987443
No 63
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.25 E-value=2e-11 Score=103.14 Aligned_cols=101 Identities=26% Similarity=0.257 Sum_probs=78.6
Q ss_pred EEEEEEEEEE------cCCCCCeEEEEEecC-ceeEeeecC-CCCCCcccceEEEEeeeCC----CceeEEEEeeccccC
Q 015462 55 IALLTLISAE------MKFKDKWLACVSLGE-QTCRTAISD-NTDKPIWNSEKKLLLETNG----PHVARISVFETNRLS 122 (406)
Q Consensus 55 ~l~v~v~~a~------~~~~~dP~v~vs~g~-k~~kT~vi~-~tLnP~wne~~~~~~e~~~----~~~l~fsV~D~D~~s 122 (406)
.|.|+|++|+ ..+..||||+|+++. +.++|+++. .+.||.|||.+.|.+.... ...+.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3789999996 346789999999988 889999975 5899999996666554432 467999999999999
Q ss_pred CCcccCcceeechhcccCCCcc--h-hhhhhccCCC
Q 015462 123 KSNLEGYCEVDLLEFLTKDSDA--D-SEVFDLLDPS 155 (406)
Q Consensus 123 ~~D~iG~~~l~L~~lLs~~e~~--~-~e~F~~~D~d 155 (406)
.++++|.+.+++.+++...... . ...+.+.+++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~ 116 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS 116 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC
Confidence 9999999999999998665432 1 3345555444
No 64
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.25 E-value=2e-11 Score=104.38 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=70.3
Q ss_pred CCccEEEEEEEEEEE------cCCCCCeEEEEEec-----CceeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEEe
Q 015462 50 EDFAGIALLTLISAE------MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVF 116 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~~~~~dP~v~vs~g-----~k~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV~ 116 (406)
....|.|.|+|++|+ ..+..||||+|.+. ....||+++++++||+|||+|.|.+... ....+.|+||
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 446899999999996 24567999999984 3467999999999999999555544322 2356999999
Q ss_pred eccccCCCcccCcceeechh
Q 015462 117 ETNRLSKSNLEGYCEVDLLE 136 (406)
Q Consensus 117 D~D~~s~~D~iG~~~l~L~~ 136 (406)
|+|..+.++++|.+.+++..
T Consensus 89 d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 89 DKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred eCCCCCCccEEEEEEEecCC
Confidence 99999999999999999864
No 65
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.24 E-value=5.6e-12 Score=113.33 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=108.3
Q ss_pred hhhhhccCCCCCcchhhhhhccc----CCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKIVGKISLSC----SVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELF 221 (406)
Q Consensus 146 ~e~F~~~D~d~dG~Il~~~l~~l----~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F 221 (406)
..+|...|.++.|.|+.+.+... ......... ++.|+.+||.+.+|+|++.||..+...+.. ++.+|
T Consensus 60 ~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~T---crlmI~mfd~~~~G~i~f~EF~~Lw~~i~~------Wr~vF 130 (221)
T KOG0037|consen 60 AGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIET---CRLMISMFDRDNSGTIGFKEFKALWKYINQ------WRNVF 130 (221)
T ss_pred HHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHH---HHHHHHHhcCCCCCccCHHHHHHHHHHHHH------HHHHH
Confidence 68899999999999944443332 332233333 889999999999999999999999987654 99999
Q ss_pred HHhccCCCCCCCHHHHHHHHHhhcccCccccCchhHHHh-hhhccccCCeeeEeeecccCcc----cccccCCCcCchhh
Q 015462 222 KAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGET-LEVADMVNTMIHLTLCFDEGTG----NQVMTGGFLTDKQA 296 (406)
Q Consensus 222 ~~~D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~~-l~~~D~~~diih~~ic~def~~----~~~~~~~fvt~~~a 296 (406)
+.||+|++|.|+..||.++|..+|..+++ .+.++ +++.|... ++.||||.|.. .+.|+..|...+++
T Consensus 131 ~~~D~D~SG~I~~sEL~~Al~~~Gy~Lsp-----q~~~~lv~kyd~~~---~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~ 202 (221)
T KOG0037|consen 131 RTYDRDRSGTIDSSELRQALTQLGYRLSP-----QFYNLLVRKYDRFG---GGRIDFDDFIQCCVVLQRLTEAFRRRDTA 202 (221)
T ss_pred HhcccCCCCcccHHHHHHHHHHcCcCCCH-----HHHHHHHHHhcccc---CCceeHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999875 45555 77777554 48899999843 34456667777777
Q ss_pred hhhhH
Q 015462 297 SNVWM 301 (406)
Q Consensus 297 ~~~w~ 301 (406)
+-+|+
T Consensus 203 q~G~i 207 (221)
T KOG0037|consen 203 QQGSI 207 (221)
T ss_pred cceeE
Confidence 76654
No 66
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.23 E-value=5.1e-11 Score=101.80 Aligned_cols=87 Identities=14% Similarity=0.334 Sum_probs=73.1
Q ss_pred ccEEEEEEEEEEE----cC------------CCCCeEEEEEecCce-eEeeecCCCCCCcccceEEEEeeeCCCceeEEE
Q 015462 52 FAGIALLTLISAE----MK------------FKDKWLACVSLGEQT-CRTAISDNTDKPIWNSEKKLLLETNGPHVARIS 114 (406)
Q Consensus 52 ~~g~l~v~v~~a~----~~------------~~~dP~v~vs~g~k~-~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fs 114 (406)
+.|+|.|+|++|. .. +..||||++.++.+. .+|+++++++||.|||+|.+.+ .....+.|.
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v--~~~~~l~~~ 79 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEV--HNGRNLELT 79 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEc--CCCCEEEEE
Confidence 4699999999995 12 367999999998755 6999999999999999555544 355779999
Q ss_pred EeeccccCCCcccCcceeechhcccC
Q 015462 115 VFETNRLSKSNLEGYCEVDLLEFLTK 140 (406)
Q Consensus 115 V~D~D~~s~~D~iG~~~l~L~~lLs~ 140 (406)
|+|++.++.++.+|.+.+++.++...
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~ 105 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQR 105 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhccc
Confidence 99999999999999999999998763
No 67
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.23 E-value=3.7e-11 Score=101.47 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=71.7
Q ss_pred CccEEEEEEEEEEE------cCCCCCeEEEEEe---cCceeEeeecCCCCCCcccceEEEEe-ee--CCCceeEEEEeec
Q 015462 51 DFAGIALLTLISAE------MKFKDKWLACVSL---GEQTCRTAISDNTDKPIWNSEKKLLL-ET--NGPHVARISVFET 118 (406)
Q Consensus 51 ~~~g~l~v~v~~a~------~~~~~dP~v~vs~---g~k~~kT~vi~~tLnP~wne~~~~~~-e~--~~~~~l~fsV~D~ 118 (406)
...+.|.|+|++|+ .....||||.|.+ +.+..||+++++++||+|||++.|.. .. .....+.++|+|+
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 34678999999996 2456799999987 45778999999999999999555421 11 1234689999999
Q ss_pred cccCCCcccCcceeechhccc
Q 015462 119 NRLSKSNLEGYCEVDLLEFLT 139 (406)
Q Consensus 119 D~~s~~D~iG~~~l~L~~lLs 139 (406)
|.++.++++|.+.+++.++..
T Consensus 93 d~~~~~~~iG~~~i~l~~l~~ 113 (125)
T cd08386 93 DRFSRNDPIGEVSLPLNKVDL 113 (125)
T ss_pred CCCcCCcEeeEEEEecccccC
Confidence 999999999999999998754
No 68
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.23 E-value=4.3e-11 Score=101.32 Aligned_cols=90 Identities=10% Similarity=0.109 Sum_probs=72.9
Q ss_pred CccEEEEEEEEEEE------cCCCCCeEEEEEec-----CceeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEEee
Q 015462 51 DFAGIALLTLISAE------MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFE 117 (406)
Q Consensus 51 ~~~g~l~v~v~~a~------~~~~~dP~v~vs~g-----~k~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV~D 117 (406)
...|.|.|+|++|+ .....||||+|.+. ..++||+++++++||+|||+|.|.+... ....+.+.|+|
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 44689999999996 23677999999984 5788999999999999999666654322 23578999999
Q ss_pred cccc--CCCcccCcceeechhcccC
Q 015462 118 TNRL--SKSNLEGYCEVDLLEFLTK 140 (406)
Q Consensus 118 ~D~~--s~~D~iG~~~l~L~~lLs~ 140 (406)
.+.+ +.++++|.+.+++.++...
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~~~ 117 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLDLS 117 (127)
T ss_pred CCcccCCCCceEEEEEEeccccccc
Confidence 9986 6889999999999987543
No 69
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.22 E-value=7.6e-11 Score=100.06 Aligned_cols=95 Identities=20% Similarity=0.267 Sum_probs=71.7
Q ss_pred cEEEEEEEEEEE---cCCCCCeEEEEEecC-ceeEeeecCCCCCCcccceEEEEeeeCC--CceeEEEEeeccccCCCcc
Q 015462 53 AGIALLTLISAE---MKFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNG--PHVARISVFETNRLSKSNL 126 (406)
Q Consensus 53 ~g~l~v~v~~a~---~~~~~dP~v~vs~g~-k~~kT~vi~~tLnP~wne~~~~~~e~~~--~~~l~fsV~D~D~~s~~D~ 126 (406)
...|.|+|++|+ ....+||||.|.+++ +..||++. +++||.|||+| .|.... ...+.+.|+|++.+++++.
T Consensus 3 ~~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f--~f~~~~~~~~~l~v~v~d~~~~~~d~~ 79 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEF--VFDDLPPDVNSFTISLSNKAKRSKDSE 79 (126)
T ss_pred eeEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeecC-CCCCCccCCEE--EEecCCCCcCEEEEEEEECCCCCCCCe
Confidence 356999999996 234679999999987 55799975 68999999954 444322 2468899999999999999
Q ss_pred cCcceeechhcccCCCcchhhhhhcc
Q 015462 127 EGYCEVDLLEFLTKDSDADSEVFDLL 152 (406)
Q Consensus 127 iG~~~l~L~~lLs~~e~~~~e~F~~~ 152 (406)
+|.+.+++..+...... ..+|.+.
T Consensus 80 iG~v~i~l~~l~~~~~~--~~W~~L~ 103 (126)
T cd08400 80 IAEVTVQLSKLQNGQET--DEWYPLS 103 (126)
T ss_pred EEEEEEEHhHccCCCcc--cEeEEcc
Confidence 99999999987653332 2344443
No 70
>PTZ00184 calmodulin; Provisional
Probab=99.22 E-value=2.3e-11 Score=105.02 Aligned_cols=129 Identities=26% Similarity=0.403 Sum_probs=99.6
Q ss_pred CCcch-hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHh-cccCcH
Q 015462 141 DSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF-GNQVAA 214 (406)
Q Consensus 141 ~e~~~-~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l-g~~~~~ 214 (406)
++... ...|..+|.+++|.| +..++..++. .+.... +..+|+.+|.+++|.|+++||..++... ......
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~ 83 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ-NPTEAE---LQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSE 83 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCC-CCCHHH---HHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHH
Confidence 33334 789999999999999 4444444443 333333 8999999999999999999999998764 334456
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHhhcccCccccCchhHHHhhhhccccCCeeeEeeecccC
Q 015462 215 NKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 215 eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
+.+..+|+.+|.|++|.|+.+||..++...+...+. .....++...|.+++ +.|.+++|
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~----~~~~~~~~~~d~~~~---g~i~~~ef 142 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTD----EEVDEMIREADVDGD---GQINYEEF 142 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCH----HHHHHHHHhcCCCCC---CcCcHHHH
Confidence 789999999999999999999999999876544332 356777888887777 66888777
No 71
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.21 E-value=7e-11 Score=101.45 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=65.1
Q ss_pred EEEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEe-eeC--------CCceeEEEEeecc
Q 015462 55 IALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL-ETN--------GPHVARISVFETN 119 (406)
Q Consensus 55 ~l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~-e~~--------~~~~l~fsV~D~D 119 (406)
.|+|+|++|+ ..+..||||+|.++.+..||+++++++||+|||.+.|.. ... ....+.++|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 5899999996 356779999999999999999999999999999555421 110 1245889999999
Q ss_pred ccCCCcccCcceee
Q 015462 120 RLSKSNLEGYCEVD 133 (406)
Q Consensus 120 ~~s~~D~iG~~~l~ 133 (406)
.+++++++|.+.+.
T Consensus 82 ~~~~d~~iG~~~i~ 95 (135)
T cd04017 82 SVGKDEFLGRSVAK 95 (135)
T ss_pred CCCCCccceEEEee
Confidence 99999999999874
No 72
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.20 E-value=7.6e-11 Score=99.73 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=69.1
Q ss_pred EEEEEEEEEE------cCCCCCeEEEEEecC---ceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCc
Q 015462 55 IALLTLISAE------MKFKDKWLACVSLGE---QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSN 125 (406)
Q Consensus 55 ~l~v~v~~a~------~~~~~dP~v~vs~g~---k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D 125 (406)
.+.|+|++|+ ..+..||||+|..+. +.+||+++++++||.|||+|.|.+.......+.|+|||++.++.++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 4789999996 356779999998753 4689999999999999996655544433567999999999988999
Q ss_pred ccCcceeechhcc
Q 015462 126 LEGYCEVDLLEFL 138 (406)
Q Consensus 126 ~iG~~~l~L~~lL 138 (406)
.+|.+.+++....
T Consensus 82 ~iG~~~i~l~~~~ 94 (126)
T cd04043 82 LCGRASLKLDPKR 94 (126)
T ss_pred eEEEEEEecCHHH
Confidence 9999999988764
No 73
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.20 E-value=6.6e-11 Score=103.61 Aligned_cols=86 Identities=14% Similarity=0.218 Sum_probs=71.2
Q ss_pred cCCccEEEEEEEEEEE------cCCCCCeEEEEEecC-----------------------------ceeEeeecCCCCCC
Q 015462 49 EEDFAGIALLTLISAE------MKFKDKWLACVSLGE-----------------------------QTCRTAISDNTDKP 93 (406)
Q Consensus 49 ~~~~~g~l~v~v~~a~------~~~~~dP~v~vs~g~-----------------------------k~~kT~vi~~tLnP 93 (406)
..+..+.|.|+|++|+ ..+.+||||+|.++. ...+|+++++++||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 4567999999999996 356789999998742 34799999999999
Q ss_pred cccceEEEEeeeCCCceeEEEEeeccccCCCcccCcceeechhcc
Q 015462 94 IWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 94 ~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG~~~l~L~~lL 138 (406)
+|||+|.|.+.......+.|+|||++ ++++|.+.+++.++.
T Consensus 103 ~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 103 VWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred ccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence 99996666554433567999999998 789999999999887
No 74
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.20 E-value=6.3e-11 Score=100.50 Aligned_cols=89 Identities=21% Similarity=0.287 Sum_probs=70.5
Q ss_pred cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEEeeccccCCCcccCcceeechhcccCCC
Q 015462 65 MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDS 142 (406)
Q Consensus 65 ~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV~D~D~~s~~D~iG~~~l~L~~lLs~~e 142 (406)
..+..||||+|.++...++|+++++++||+|||+|.|.+... ....+.+.|||++.++.++++|.+.+++.++.....
T Consensus 11 ~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~ 90 (127)
T cd08373 11 LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGL 90 (127)
T ss_pred cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCc
Confidence 356789999999999999999999999999999666655432 356799999999999999999999999999875433
Q ss_pred cchhhhhhccCCC
Q 015462 143 DADSEVFDLLDPS 155 (406)
Q Consensus 143 ~~~~e~F~~~D~d 155 (406)
. ...+.+.+.+
T Consensus 91 ~--~~~~~L~~~~ 101 (127)
T cd08373 91 L--EVTEPLLDSN 101 (127)
T ss_pred e--EEEEeCcCCC
Confidence 3 2334445444
No 75
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.20 E-value=8.7e-11 Score=99.78 Aligned_cols=82 Identities=13% Similarity=0.244 Sum_probs=67.1
Q ss_pred EEEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeecccc-------
Q 015462 55 IALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRL------- 121 (406)
Q Consensus 55 ~l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~------- 121 (406)
.|.|+|++|+ ..+..||||+|.++.+..+|+++++++||+|||+|.|.... ....+.++|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~-~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHN-SSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecC-CCCEEEEEEEECCCCcccccce
Confidence 5889999996 34567999999999999999999999999999955543332 345799999999853
Q ss_pred ----CCCcccCcceeechhc
Q 015462 122 ----SKSNLEGYCEVDLLEF 137 (406)
Q Consensus 122 ----s~~D~iG~~~l~L~~l 137 (406)
..++++|.+.+++.++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~ 100 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTL 100 (127)
T ss_pred eccccCCCcceEEEEEhHHc
Confidence 4689999999998875
No 76
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.19 E-value=3.5e-11 Score=104.86 Aligned_cols=94 Identities=23% Similarity=0.470 Sum_probs=81.2
Q ss_pred hhhhhccCCCCCcch-hhhhhcccCCC---CChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKI-VGKISLSCSVE---DPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELF 221 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I-l~~~l~~l~~~---~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F 221 (406)
.++|+.+|. +.+.+ +.+++..++.. ...+.+ ++.+|+.||.|++|+|+..|++.++..+|...+++++++++
T Consensus 59 ~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Ee---l~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll 134 (160)
T COG5126 59 NKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEE---LREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLL 134 (160)
T ss_pred HHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHH---HHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHH
Confidence 889999999 88888 66666555432 222334 89999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCHHHHHHHHHh
Q 015462 222 KAADKNGDGVVSVDELAALLAL 243 (406)
Q Consensus 222 ~~~D~d~dG~Is~~E~~~~l~~ 243 (406)
+.+|.|++|.|+++||++.+..
T Consensus 135 ~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 135 KEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HhcCCCCCceEeHHHHHHHHhc
Confidence 9999999999999999998754
No 77
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.18 E-value=8.2e-11 Score=101.37 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=75.8
Q ss_pred EEEEEEEEE----c-CCCCCeEEEEEec----CceeEeeecCCCCCCcccceEEEEeeeC---------------CCcee
Q 015462 56 ALLTLISAE----M-KFKDKWLACVSLG----EQTCRTAISDNTDKPIWNSEKKLLLETN---------------GPHVA 111 (406)
Q Consensus 56 l~v~v~~a~----~-~~~~dP~v~vs~g----~k~~kT~vi~~tLnP~wne~~~~~~e~~---------------~~~~l 111 (406)
|.|+|++|+ + .+..||||.|.++ .+..||+++++++||.|||++.|.+... ....+
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 578999996 2 4678999999998 7889999999999999999665544332 24569
Q ss_pred EEEEeeccccCCCcccCcceeechhcccCCCcchhhhhhccCCC
Q 015462 112 RISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPS 155 (406)
Q Consensus 112 ~fsV~D~D~~s~~D~iG~~~l~L~~lLs~~e~~~~e~F~~~D~d 155 (406)
.+.|||++.++.++++|.+.+++.++...... ..+|.+....
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~--~~W~~L~~~~ 122 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSH--QAWYFLQPRE 122 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCCCcc--cceEecCCcC
Confidence 99999999998999999999999987643332 3455544433
No 78
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.18 E-value=7.2e-11 Score=99.94 Aligned_cols=89 Identities=20% Similarity=0.287 Sum_probs=70.6
Q ss_pred CCccEEEEEEEEEEE------cCCCCCeEEEEEe---cCceeEeeecCCCCCCcccceEEEE-eeeC--CCceeEEEEee
Q 015462 50 EDFAGIALLTLISAE------MKFKDKWLACVSL---GEQTCRTAISDNTDKPIWNSEKKLL-LETN--GPHVARISVFE 117 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~~~~~dP~v~vs~---g~k~~kT~vi~~tLnP~wne~~~~~-~e~~--~~~~l~fsV~D 117 (406)
....+.|.|+|++|+ .++.+||||.+.+ ..+..||++++. +||+|||+|.|. +..+ ....+.|+|+|
T Consensus 12 ~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 12 DPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 455788999999996 3567799988654 356789999887 999999955553 3221 25669999999
Q ss_pred ccccCCCcccCcceeechhccc
Q 015462 118 TNRLSKSNLEGYCEVDLLEFLT 139 (406)
Q Consensus 118 ~D~~s~~D~iG~~~l~L~~lLs 139 (406)
++.+++++.+|.+.+++.++..
T Consensus 91 ~~~~~~~~~lG~~~i~L~~l~~ 112 (124)
T cd08389 91 VERMRKERLIGEKVVPLSQLNL 112 (124)
T ss_pred CCCcccCceEEEEEEeccccCC
Confidence 9999999999999999998743
No 79
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.17 E-value=6.4e-11 Score=101.75 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=69.3
Q ss_pred CCccEEEEEEEEEEE------cCCCCCeEEEEEec--C---ceeEeeecCCCCCCcccceEEEEeeeCC--CceeEEEEe
Q 015462 50 EDFAGIALLTLISAE------MKFKDKWLACVSLG--E---QTCRTAISDNTDKPIWNSEKKLLLETNG--PHVARISVF 116 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~~~~~dP~v~vs~g--~---k~~kT~vi~~tLnP~wne~~~~~~e~~~--~~~l~fsV~ 116 (406)
.+..|.|.|+|++|+ ..+..||||.|.++ . +..+|+++++++||+|||+|.|.+.... ...+.|+||
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~ 90 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVL 90 (136)
T ss_pred cCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 446789999999996 34567999999983 2 3578999999999999995554433211 246899999
Q ss_pred eccccCCCcccCcceeechh
Q 015462 117 ETNRLSKSNLEGYCEVDLLE 136 (406)
Q Consensus 117 D~D~~s~~D~iG~~~l~L~~ 136 (406)
|.+.++.++++|.+.+++..
T Consensus 91 d~~~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 91 DYDRIGKNDPIGKVVLGCNA 110 (136)
T ss_pred eCCCCCCCceeEEEEECCcc
Confidence 99999999999999998864
No 80
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.17 E-value=1.3e-10 Score=96.65 Aligned_cols=85 Identities=24% Similarity=0.321 Sum_probs=69.8
Q ss_pred EEEEEEEEE------cCCCCCeEEEEEec-CceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccC
Q 015462 56 ALLTLISAE------MKFKDKWLACVSLG-EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEG 128 (406)
Q Consensus 56 l~v~v~~a~------~~~~~dP~v~vs~g-~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG 128 (406)
|.|+|++|+ ..+.+||||+|... .+.++|+++.+++||+|||++.+.+.......+.|+|||++..+.++++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 578999996 24567999999985 46689999999999999995555444333567999999999999999999
Q ss_pred cceeechhcccC
Q 015462 129 YCEVDLLEFLTK 140 (406)
Q Consensus 129 ~~~l~L~~lLs~ 140 (406)
.+.+++.++...
T Consensus 81 ~~~~~l~~l~~~ 92 (115)
T cd04040 81 SAYIDLSDLEPE 92 (115)
T ss_pred EEEEEHHHcCCC
Confidence 999999987653
No 81
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.17 E-value=6.1e-11 Score=98.31 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=71.4
Q ss_pred cCCCCCeEEEEEecCc-eeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccCcceeechhcccCCCc
Q 015462 65 MKFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSD 143 (406)
Q Consensus 65 ~~~~~dP~v~vs~g~k-~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG~~~l~L~~lLs~~e~ 143 (406)
+.+.+||||+|.++.+ ..+|+++++++||+|||.+.|.+.......+.|.|+|++.+ .++.+|.+.+++.+++.....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence 5678899999999874 67999999999999999777666543456699999999999 899999999999998654322
Q ss_pred chhhhhhccCCCCCcch
Q 015462 144 ADSEVFDLLDPSSSNKI 160 (406)
Q Consensus 144 ~~~e~F~~~D~d~dG~I 160 (406)
. ..+|.+-+ ...|.|
T Consensus 88 ~-~~w~~L~~-~~~G~i 102 (111)
T cd04052 88 G-QQWFPLSG-NGQGRI 102 (111)
T ss_pred c-ceeEECCC-CCCCEE
Confidence 1 34555433 345554
No 82
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.16 E-value=1.6e-10 Score=97.21 Aligned_cols=89 Identities=18% Similarity=0.257 Sum_probs=71.7
Q ss_pred CCccEEEEEEEEEEE-------cCCCCCeEEEEEec-----CceeEeeecCCCCCCcccceEEEEeeeCC--CceeEEEE
Q 015462 50 EDFAGIALLTLISAE-------MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETNG--PHVARISV 115 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~-------~~~~~dP~v~vs~g-----~k~~kT~vi~~tLnP~wne~~~~~~e~~~--~~~l~fsV 115 (406)
+...|.|.|+|++|+ .....||||+|.+. ....||+++++++||+|||+|.|.+.... ...+.++|
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 10 NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 446789999999996 23577999999772 14679999999999999996555443221 45799999
Q ss_pred eeccccCCCcccCcceeechhcc
Q 015462 116 FETNRLSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 116 ~D~D~~s~~D~iG~~~l~L~~lL 138 (406)
||++.+++++++|.+.+++.++.
T Consensus 90 ~d~~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd08521 90 WHHDRFGRNTFLGEVEIPLDSWD 112 (123)
T ss_pred EeCCCCcCCceeeEEEEeccccc
Confidence 99999999999999999998874
No 83
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.16 E-value=5.6e-11 Score=136.55 Aligned_cols=107 Identities=13% Similarity=0.191 Sum_probs=87.8
Q ss_pred CCccEEEEEEEEEEE----cCCCCCeEEEEEecCc-eeEeeecCCCCCCcccceEEEEeeeCCC-ceeEEEEeeccccCC
Q 015462 50 EDFAGIALLTLISAE----MKFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGP-HVARISVFETNRLSK 123 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~----~~~~~dP~v~vs~g~k-~~kT~vi~~tLnP~wne~~~~~~e~~~~-~~l~fsV~D~D~~s~ 123 (406)
....|.|.|+|++|+ ..+.+||||++.+|++ +.||++++++.||+|||+|.|.|+.... ..+.++|||+|.|++
T Consensus 1976 ~~~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred hhCCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence 457899999999996 3467799999999976 7899999999999999988888887543 459999999999854
Q ss_pred CcccCcceeechhcccCCCcchhhhhhccCC-CCCcc
Q 015462 124 SNLEGYCEVDLLEFLTKDSDADSEVFDLLDP-SSSNK 159 (406)
Q Consensus 124 ~D~iG~~~l~L~~lLs~~e~~~~e~F~~~D~-d~dG~ 159 (406)
|.+|++++++.++++.... .+.|.+.+. .++|.
T Consensus 2056 -d~~G~~~i~l~~vv~~~~~--~~~~~L~~~~~k~G~ 2089 (2102)
T PLN03200 2056 -SSLGKVTIQIDRVVMEGTY--SGEYSLNPESNKDGS 2089 (2102)
T ss_pred -CCCceEEEEHHHHhcCcee--eeeeecCcccccCCC
Confidence 5999999999999876655 456776653 35665
No 84
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.16 E-value=1.6e-10 Score=101.25 Aligned_cols=86 Identities=22% Similarity=0.250 Sum_probs=66.1
Q ss_pred CCCCCeEEEEEe-----cCceeEeeecCCCCCCcccceEEEEeeeCC--------CceeEEEEeecccc-CCCcccCcce
Q 015462 66 KFKDKWLACVSL-----GEQTCRTAISDNTDKPIWNSEKKLLLETNG--------PHVARISVFETNRL-SKSNLEGYCE 131 (406)
Q Consensus 66 ~~~~dP~v~vs~-----g~k~~kT~vi~~tLnP~wne~~~~~~e~~~--------~~~l~fsV~D~D~~-s~~D~iG~~~ 131 (406)
..+.||||.+.+ +.++.||+++++|+||+|||++.|.+.... ...+.++|||.+.+ ++++.||.+.
T Consensus 22 ~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~ 101 (155)
T cd08690 22 PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQ 101 (155)
T ss_pred CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEE
Confidence 456899999986 457899999999999999996665554321 34599999999987 5799999999
Q ss_pred eechhcccCCCcchhhhhhccC
Q 015462 132 VDLLEFLTKDSDADSEVFDLLD 153 (406)
Q Consensus 132 l~L~~lLs~~e~~~~e~F~~~D 153 (406)
+++..+....+. ...+.++|
T Consensus 102 i~L~~l~~~~~~--~~~~~L~~ 121 (155)
T cd08690 102 VKLEPLETKCEI--HESVDLMD 121 (155)
T ss_pred EEcccccccCcc--eEEEEhhh
Confidence 999987655544 23555554
No 85
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.16 E-value=7.2e-11 Score=101.41 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=65.9
Q ss_pred CccEEEEEEEEEEE------cCCCCCeEEEEEe--cC---ceeEeeecCCCCCCcccceEEEEeeeCC--CceeEEEEee
Q 015462 51 DFAGIALLTLISAE------MKFKDKWLACVSL--GE---QTCRTAISDNTDKPIWNSEKKLLLETNG--PHVARISVFE 117 (406)
Q Consensus 51 ~~~g~l~v~v~~a~------~~~~~dP~v~vs~--g~---k~~kT~vi~~tLnP~wne~~~~~~e~~~--~~~l~fsV~D 117 (406)
+..|.|.|+|++|+ ..+..||||+|.+ +. ++.+|+++++++||+|||+|.|.+..+. ...+.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 34689999999996 3457899999986 32 3578999999999999996655443211 2358999999
Q ss_pred ccccCCCcccCcceeec
Q 015462 118 TNRLSKSNLEGYCEVDL 134 (406)
Q Consensus 118 ~D~~s~~D~iG~~~l~L 134 (406)
+|..++++++|.+.|..
T Consensus 91 ~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred CCCCCCCcEEEEEEEcC
Confidence 99999999999887654
No 86
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.16 E-value=7.3e-11 Score=101.81 Aligned_cols=87 Identities=13% Similarity=0.204 Sum_probs=70.0
Q ss_pred CCccEEEEEEEEEEE------cCCCCCeEEEEEec---C---ceeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEE
Q 015462 50 EDFAGIALLTLISAE------MKFKDKWLACVSLG---E---QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISV 115 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~~~~~dP~v~vs~g---~---k~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV 115 (406)
+...|.|.|+|++|+ ..+..||||+|.+. + .+.||+++++++||+|||+|.|.+..+ ....+.|+|
T Consensus 11 ~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V 90 (138)
T cd08408 11 NALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSV 90 (138)
T ss_pred cCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEE
Confidence 456899999999996 35667999999872 1 246999999999999999665554432 245799999
Q ss_pred eeccccCCCcccCcceeechh
Q 015462 116 FETNRLSKSNLEGYCEVDLLE 136 (406)
Q Consensus 116 ~D~D~~s~~D~iG~~~l~L~~ 136 (406)
+|.+.+++++.+|.+.+++..
T Consensus 91 ~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 91 YNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred EECCCCCCCcEEEEEEECCcC
Confidence 999999999999998887653
No 87
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.14 E-value=1.1e-10 Score=99.96 Aligned_cols=86 Identities=24% Similarity=0.245 Sum_probs=68.1
Q ss_pred CCccEEEEEEEEEEE------cCCCCCeEEEEEec---C--ceeEeeecCCCCCCcccceEEEEeeeCC--CceeEEEEe
Q 015462 50 EDFAGIALLTLISAE------MKFKDKWLACVSLG---E--QTCRTAISDNTDKPIWNSEKKLLLETNG--PHVARISVF 116 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~~~~~dP~v~vs~g---~--k~~kT~vi~~tLnP~wne~~~~~~e~~~--~~~l~fsV~ 116 (406)
.+..|.|.|+|++|+ ..+.+||||.|.+. . +..+|+++++++||+|||+|.|.+..+. ...+.|+||
T Consensus 10 ~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~ 89 (134)
T cd08403 10 LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVV 89 (134)
T ss_pred cCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 345799999999996 24677999999873 2 3679999999999999995555433211 235899999
Q ss_pred eccccCCCcccCcceeech
Q 015462 117 ETNRLSKSNLEGYCEVDLL 135 (406)
Q Consensus 117 D~D~~s~~D~iG~~~l~L~ 135 (406)
|+|.++.++++|.+.+++.
T Consensus 90 d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 90 DYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred ECCCCCCCceeEEEEECCC
Confidence 9999999999999999765
No 88
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.14 E-value=1.5e-10 Score=99.45 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=70.3
Q ss_pred CCccEEEEEEEEEEE------cCCCCCeEEEEEe--c---CceeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEEe
Q 015462 50 EDFAGIALLTLISAE------MKFKDKWLACVSL--G---EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVF 116 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~~~~~dP~v~vs~--g---~k~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV~ 116 (406)
+...|.|.|+|++|+ ..+..||||+|.+ + ....||+++++++||+|||+|.|.+..+ ....+.|+|+
T Consensus 11 ~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~ 90 (136)
T cd08405 11 NPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVM 90 (136)
T ss_pred cCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 345789999999996 3557799999987 2 2357899999999999999555543321 2356899999
Q ss_pred eccccCCCcccCcceeechhc
Q 015462 117 ETNRLSKSNLEGYCEVDLLEF 137 (406)
Q Consensus 117 D~D~~s~~D~iG~~~l~L~~l 137 (406)
|.+.+++++++|.+.+++.+.
T Consensus 91 d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 91 DKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred ECCCCCCCcEeEEEEECCccC
Confidence 999999999999999988764
No 89
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.14 E-value=2.2e-10 Score=96.38 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=73.8
Q ss_pred CCccEEEEEEEEEEE----c---CCCCCeEEEEEe---cCceeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEEee
Q 015462 50 EDFAGIALLTLISAE----M---KFKDKWLACVSL---GEQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFE 117 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~----~---~~~~dP~v~vs~---g~k~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV~D 117 (406)
+...+.|.|+|++|+ . ....||||.|.+ +.+..+|+++++++||+|||+|.|.+... ....+.++|||
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 10 DLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 456789999999996 2 345699999987 45678999999999999999555544321 13579999999
Q ss_pred ccccCCCcccCcceeechhcccCCC
Q 015462 118 TNRLSKSNLEGYCEVDLLEFLTKDS 142 (406)
Q Consensus 118 ~D~~s~~D~iG~~~l~L~~lLs~~e 142 (406)
.+..+.++++|.+.+++.++.....
T Consensus 90 ~~~~~~~~~iG~~~i~L~~l~~~~~ 114 (123)
T cd08390 90 VDRFSRHCIIGHVLFPLKDLDLVKG 114 (123)
T ss_pred CCcCCCCcEEEEEEEeccceecCCC
Confidence 9999999999999999998765443
No 90
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.14 E-value=5.9e-11 Score=99.19 Aligned_cols=130 Identities=22% Similarity=0.258 Sum_probs=107.1
Q ss_pred cCCCcch-hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccC--CCCceeHHHHHHHHHHhccc
Q 015462 139 TKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYN--QDGQLSFKEFSDLISAFGNQ 211 (406)
Q Consensus 139 s~~e~~~-~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d--~dG~I~~~Ef~~~l~~lg~~ 211 (406)
++++..+ +++|.+||..+||+| .++.+++++. +|++.+ +.+.+..++.+ +--.|+|++|+-++..+...
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~-nPT~ae---V~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQ-NPTNAE---VLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcC-CCcHHH---HHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 3445556 999999999999999 7899999998 888888 88899888887 44689999999999987543
Q ss_pred ---CcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcccCccccCchhHHHhhhhccccCCeeeEeeecccC
Q 015462 212 ---VAANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 212 ---~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
-+-++.-+-++.||++++|.|...||+.+|..+|++..+. .+.+.+... ++.+ |.|.++.|
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~ee----EVe~Llag~-eD~n---G~i~YE~f 145 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEE----EVEELLAGQ-EDSN---GCINYEAF 145 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHH----HHHHHHccc-cccC---CcCcHHHH
Confidence 3457788889999999999999999999999999998874 677777665 3333 66777776
No 91
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.13 E-value=2e-10 Score=98.63 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=68.0
Q ss_pred ccEEEEEEEEEEE------cCCCCCeEEEEEec--C---ceeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEEeec
Q 015462 52 FAGIALLTLISAE------MKFKDKWLACVSLG--E---QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFET 118 (406)
Q Consensus 52 ~~g~l~v~v~~a~------~~~~~dP~v~vs~g--~---k~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV~D~ 118 (406)
..+.|.|+|++|+ ..+.+||||.|.+. . ...||+++++++||+|||+|.|.+... ....+.|+|||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 4678999999996 34567999999872 2 256899999999999999555543321 234588999999
Q ss_pred cccCCCcccCcceeechh
Q 015462 119 NRLSKSNLEGYCEVDLLE 136 (406)
Q Consensus 119 D~~s~~D~iG~~~l~L~~ 136 (406)
|.+++++++|.+.+++..
T Consensus 93 d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 93 DRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCCCccEEEEEECCcC
Confidence 999999999999998876
No 92
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.13 E-value=2e-10 Score=96.48 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=63.2
Q ss_pred CCCCCeEEEEEecCc-------eeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccc----cCCCcccCcceeec
Q 015462 66 KFKDKWLACVSLGEQ-------TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNR----LSKSNLEGYCEVDL 134 (406)
Q Consensus 66 ~~~~dP~v~vs~g~k-------~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~----~s~~D~iG~~~l~L 134 (406)
.+.+||||+|.+... ..||+++++++||+|||++.|.+..+....+.|+|||+|. ++.+|++|.+.+++
T Consensus 18 ~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l 97 (120)
T cd04048 18 LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTL 97 (120)
T ss_pred CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEH
Confidence 466799999998654 4899999999999999966654444445679999999997 89999999999999
Q ss_pred hhcccCC
Q 015462 135 LEFLTKD 141 (406)
Q Consensus 135 ~~lLs~~ 141 (406)
.+++..+
T Consensus 98 ~~l~~~~ 104 (120)
T cd04048 98 GEIVSSP 104 (120)
T ss_pred HHHhcCC
Confidence 9987554
No 93
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.11 E-value=2.3e-10 Score=100.20 Aligned_cols=98 Identities=17% Similarity=0.352 Sum_probs=80.2
Q ss_pred hhhhhccCCCCCcch-hhhhh---cccCCCCChhh-HHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKI-VGKIS---LSCSVEDPIET-EKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEEL 220 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I-l~~~l---~~l~~~~~~e~-e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~ 220 (406)
..+++.+|.+++|.| +.+++ ........... ....++.+|+.||.|++|+|+.+||..+|..+|...+.+++..+
T Consensus 47 ~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~m 126 (151)
T KOG0027|consen 47 RDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEM 126 (151)
T ss_pred HHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHH
Confidence 889999999999999 33333 32222111111 12238999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCHHHHHHHHHh
Q 015462 221 FKAADKNGDGVVSVDELAALLAL 243 (406)
Q Consensus 221 F~~~D~d~dG~Is~~E~~~~l~~ 243 (406)
++.+|.|+||.|+++||+.++..
T Consensus 127 i~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 127 IREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHhcCCCCCCeEeHHHHHHHHhc
Confidence 99999999999999999998853
No 94
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.09 E-value=4.9e-10 Score=96.42 Aligned_cols=87 Identities=23% Similarity=0.298 Sum_probs=67.8
Q ss_pred EEEEEEEEEE-----cCCCCCeEEEEEec-------------CceeEeeecCCCCCCcc-cceEEEEeeeCCCceeEEEE
Q 015462 55 IALLTLISAE-----MKFKDKWLACVSLG-------------EQTCRTAISDNTDKPIW-NSEKKLLLETNGPHVARISV 115 (406)
Q Consensus 55 ~l~v~v~~a~-----~~~~~dP~v~vs~g-------------~k~~kT~vi~~tLnP~w-ne~~~~~~e~~~~~~l~fsV 115 (406)
+..|.+++|+ +.+++||||++++. .+..||+++++++||+| ||++.|.. .....+.++|
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v--~~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVG--LPTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEc--CCCCEEEEEE
Confidence 3568888885 34678999999883 24789999999999999 99555543 3456799999
Q ss_pred eeccccCC---CcccCcceeechhcccCCCc
Q 015462 116 FETNRLSK---SNLEGYCEVDLLEFLTKDSD 143 (406)
Q Consensus 116 ~D~D~~s~---~D~iG~~~l~L~~lLs~~e~ 143 (406)
||++..+. +|.+|.+.+++.+++..+..
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~ 110 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAI 110 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccC
Confidence 99875443 68999999999999765433
No 95
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.09 E-value=3.9e-10 Score=96.14 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=77.1
Q ss_pred cEEEEEEEEEEE------cCCCCCeEEEEEec-----CceeEeeecCCCCCCcccceEEEEeeeC-CCceeEEEEeeccc
Q 015462 53 AGIALLTLISAE------MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN-GPHVARISVFETNR 120 (406)
Q Consensus 53 ~g~l~v~v~~a~------~~~~~dP~v~vs~g-----~k~~kT~vi~~tLnP~wne~~~~~~e~~-~~~~l~fsV~D~D~ 120 (406)
.|.|.|+|++|+ .....||||.|.+. ....+|+++++++||.|||++.|.+... ....+.+.|||++.
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 389999999996 23467999999985 3678999999999999999665544321 24569999999999
Q ss_pred cCCCcccCcceeechhcccCCCcchhhhhhccCC
Q 015462 121 LSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDP 154 (406)
Q Consensus 121 ~s~~D~iG~~~l~L~~lLs~~e~~~~e~F~~~D~ 154 (406)
++.++++|.+.+++.++... .. ..+|.+.+.
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~-~~--~~w~~L~~~ 122 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM-PV--DGWYKLLNQ 122 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC-cc--CceEECcCc
Confidence 99999999999999998754 11 345555543
No 96
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.08 E-value=4e-10 Score=96.17 Aligned_cols=89 Identities=9% Similarity=0.145 Sum_probs=67.2
Q ss_pred ccCCccEEEEEEEEEEE----c--CCCCCeEEEEEe---cC--ceeEeeecCCCC-CCcccceEEEEeeeC-CCceeEEE
Q 015462 48 NEEDFAGIALLTLISAE----M--KFKDKWLACVSL---GE--QTCRTAISDNTD-KPIWNSEKKLLLETN-GPHVARIS 114 (406)
Q Consensus 48 ~~~~~~g~l~v~v~~a~----~--~~~~dP~v~vs~---g~--k~~kT~vi~~tL-nP~wne~~~~~~e~~-~~~~l~fs 114 (406)
+=.+..|.|.|+|++|+ + ....||||+|++ ++ .+.||+++++++ ||+|||.|.|.+..+ ....+.++
T Consensus 8 ~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~ 87 (135)
T cd08692 8 CFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIK 87 (135)
T ss_pred eecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEE
Confidence 33567899999999996 1 344478999987 33 367899999996 599999554433321 23457899
Q ss_pred EeeccccCCCcccCcceeechh
Q 015462 115 VFETNRLSKSNLEGYCEVDLLE 136 (406)
Q Consensus 115 V~D~D~~s~~D~iG~~~l~L~~ 136 (406)
|+|+|..+++|+||.+.+....
T Consensus 88 v~d~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 88 LYSRSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred EEeCCCCcCCceEEEEEECCcc
Confidence 9999999999999999988765
No 97
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.07 E-value=3.6e-10 Score=97.32 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=67.8
Q ss_pred CCccEEEEEEEEEEE-c----CCCCCeEEEEEecC-----ceeEeeecCCCCCCcccceEEEEeeeC--CCceeEEEEee
Q 015462 50 EDFAGIALLTLISAE-M----KFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFE 117 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~-~----~~~~dP~v~vs~g~-----k~~kT~vi~~tLnP~wne~~~~~~e~~--~~~~l~fsV~D 117 (406)
.+..+.|.|+|++|+ + ...+||||.|.+.. ++.||+++++++||+|||+|.|.+..+ ....+.|+|+|
T Consensus 11 ~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~ 90 (137)
T cd08409 11 NPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ 90 (137)
T ss_pred CCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence 345688999999996 2 24479999998732 356999999999999999655544321 23579999999
Q ss_pred ccccCCCcccCcceeechh
Q 015462 118 TNRLSKSNLEGYCEVDLLE 136 (406)
Q Consensus 118 ~D~~s~~D~iG~~~l~L~~ 136 (406)
.+.+++++.+|.+.+....
T Consensus 91 ~~~~~~~~~lG~v~ig~~~ 109 (137)
T cd08409 91 SGGVRKSKLLGRVVLGPFM 109 (137)
T ss_pred CCCCCCcceEEEEEECCcc
Confidence 9999999999999887543
No 98
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.05 E-value=9.2e-10 Score=92.77 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=71.1
Q ss_pred CCccEEEEEEEEEEE------cCCCCCeEEEEEec-----CceeEeeecCCCCCCcccceEEEE-eee--CCCceeEEEE
Q 015462 50 EDFAGIALLTLISAE------MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLL-LET--NGPHVARISV 115 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~~~~~dP~v~vs~g-----~k~~kT~vi~~tLnP~wne~~~~~-~e~--~~~~~l~fsV 115 (406)
++..+.|.|+|++|+ .....||||++.+. ....||+++++++||+|||++.|. +.. .....+.|+|
T Consensus 11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 11 DPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred eCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 344688999999996 23567999999872 357899999999999999955442 111 1135789999
Q ss_pred eeccccCCCcccCcceeechhcccCC
Q 015462 116 FETNRLSKSNLEGYCEVDLLEFLTKD 141 (406)
Q Consensus 116 ~D~D~~s~~D~iG~~~l~L~~lLs~~ 141 (406)
||.+.+ .++.+|.+.+++.++...+
T Consensus 91 ~d~~~~-~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 91 LDEDRF-GNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred EEcCCc-CCeeEEEEEEEcccCCCCc
Confidence 999988 8899999999999987544
No 99
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.05 E-value=1.5e-10 Score=113.03 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=68.8
Q ss_pred cEEEEEEEEEEE------cCCCCCeEEEEEe-----cCceeEeeecCCCCCCcccceEEEEee-eCCCceeEEEEeeccc
Q 015462 53 AGIALLTLISAE------MKFKDKWLACVSL-----GEQTCRTAISDNTDKPIWNSEKKLLLE-TNGPHVARISVFETNR 120 (406)
Q Consensus 53 ~g~l~v~v~~a~------~~~~~dP~v~vs~-----g~k~~kT~vi~~tLnP~wne~~~~~~e-~~~~~~l~fsV~D~D~ 120 (406)
...|.|+|..|+ ..+-+||||.+.+ +..+.||++++.+|||+|||+|.|-+. .+.+..+.++|||||+
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 456777888885 3566799999876 345668999999999999995555433 3346779999999999
Q ss_pred cCCCcccCcceeechhcc
Q 015462 121 LSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 121 ~s~~D~iG~~~l~L~~lL 138 (406)
-++||++|..++.+.+++
T Consensus 259 TsRNDFMGslSFgisEl~ 276 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQ 276 (683)
T ss_pred cccccccceecccHHHHh
Confidence 999999999999988874
No 100
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.04 E-value=6.1e-10 Score=94.98 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=76.0
Q ss_pred ccEEEEEEEEEEE------cCCCCCeEEEEEecC-----ceeEeeecCCCCCCcccceEEEEeeeCC--CceeEEEEeec
Q 015462 52 FAGIALLTLISAE------MKFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLLETNG--PHVARISVFET 118 (406)
Q Consensus 52 ~~g~l~v~v~~a~------~~~~~dP~v~vs~g~-----k~~kT~vi~~tLnP~wne~~~~~~e~~~--~~~l~fsV~D~ 118 (406)
-.|.|.|+|++|+ .....||||.|.+.. ...+|++++++.||.|||+|.|.+.... ...+.|+|+|.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 3689999999996 245679999998743 3679999999999999995555433221 35699999999
Q ss_pred cccCCCcccCcceeechhcccCCCcchhhhhhccCCC
Q 015462 119 NRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPS 155 (406)
Q Consensus 119 D~~s~~D~iG~~~l~L~~lLs~~e~~~~e~F~~~D~d 155 (406)
+.++.++++|.+.+++.+ ..... ..++.+++..
T Consensus 92 ~~~~~~~~lG~~~i~l~~--~~~~~--~~W~~l~~~~ 124 (134)
T cd00276 92 DSVGRNEVIGQVVLGPDS--GGEEL--EHWNEMLASP 124 (134)
T ss_pred CCCCCCceeEEEEECCCC--CCcHH--HHHHHHHhCC
Confidence 999999999999999988 22222 4566666553
No 101
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.03 E-value=5.5e-10 Score=95.00 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=101.2
Q ss_pred chhcccCCCcch-hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHH-
Q 015462 134 LLEFLTKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA- 207 (406)
Q Consensus 134 L~~lLs~~e~~~-~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~- 207 (406)
+...+.+.++.+ ++.|+.+|.|+||.| ++..+.+++. .+.+.+ +..+++.. .|.|+|.-|+.++..
T Consensus 22 vFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk-~~~d~e---lDaM~~Ea----~gPINft~FLTmfGek 93 (171)
T KOG0031|consen 22 VFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGK-IASDEE---LDAMMKEA----PGPINFTVFLTMFGEK 93 (171)
T ss_pred HHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCC-CCCHHH---HHHHHHhC----CCCeeHHHHHHHHHHH
Confidence 455577788888 999999999999999 8888999987 466666 88888754 789999999999987
Q ss_pred hcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcccCccccCchhHHHhhhhc
Q 015462 208 FGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVA 264 (406)
Q Consensus 208 lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~~l~~~ 264 (406)
+....+++.|..+|+.||.+++|.|..+.|+++|...|++.... .+.++++..
T Consensus 94 L~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~e----EV~~m~r~~ 146 (171)
T KOG0031|consen 94 LNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDE----EVDEMYREA 146 (171)
T ss_pred hcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHH----HHHHHHHhC
Confidence 67777889999999999999999999999999999999887763 577776654
No 102
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.02 E-value=6.7e-10 Score=100.11 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=97.4
Q ss_pred hhhhhccCCC-CCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHH
Q 015462 146 SEVFDLLDPS-SSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEEL 220 (406)
Q Consensus 146 ~e~F~~~D~d-~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~ 220 (406)
.+++..|-.+ .+|.+ +..++.... |......+.+.+|+.+|.|+||.|+|.||+.++..+.....++.++.+
T Consensus 29 ~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~f---p~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~ 105 (193)
T KOG0044|consen 29 QQWYRGFKNECPSGRLTLEEFREIYASFF---PDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWA 105 (193)
T ss_pred HHHHHHhcccCCCCccCHHHHHHHHHHHC---CCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhh
Confidence 5566655444 36666 444554443 223344568999999999999999999999999998888888999999
Q ss_pred HHHhccCCCCCCCHHHHHHHHHhhccc-----CccccCch--hHHHhhhhccccCCeeeEeeecccC
Q 015462 221 FKAADKNGDGVVSVDELAALLALQQEK-----EPLMNCCP--VCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 221 F~~~D~d~dG~Is~~E~~~~l~~~~e~-----~~~~~~cp--~~~~~l~~~D~~~diih~~ic~def 280 (406)
|+.||.||+|+|+++|+..++...-.. .++...+| .+..++++.|.++| +.+..++|
T Consensus 106 F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~D---g~lT~eef 169 (193)
T KOG0044|consen 106 FRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKD---GKLTLEEF 169 (193)
T ss_pred heeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCC---CcccHHHH
Confidence 999999999999999999988765321 12223333 47778999999999 77888776
No 103
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.00 E-value=1.1e-09 Score=90.35 Aligned_cols=72 Identities=25% Similarity=0.297 Sum_probs=59.2
Q ss_pred CCCCCeEEEEEecC------ceeEeeecCCCCCCcccceEEEEeee----CCCceeEEEEeeccccCCCcccCcceeech
Q 015462 66 KFKDKWLACVSLGE------QTCRTAISDNTDKPIWNSEKKLLLET----NGPHVARISVFETNRLSKSNLEGYCEVDLL 135 (406)
Q Consensus 66 ~~~~dP~v~vs~g~------k~~kT~vi~~tLnP~wne~~~~~~e~----~~~~~l~fsV~D~D~~s~~D~iG~~~l~L~ 135 (406)
.+.+||||+|.+.. ..++|+++++++||+|| ++.+.... +....+.|+|||+|.+++++++|.+.+++.
T Consensus 18 ~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~ 96 (110)
T cd04047 18 FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLD 96 (110)
T ss_pred CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHH
Confidence 45789999998743 35899999999999999 55554321 125679999999999999999999999999
Q ss_pred hcc
Q 015462 136 EFL 138 (406)
Q Consensus 136 ~lL 138 (406)
+++
T Consensus 97 ~l~ 99 (110)
T cd04047 97 ELL 99 (110)
T ss_pred HHh
Confidence 987
No 104
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.97 E-value=1.5e-09 Score=81.04 Aligned_cols=61 Identities=23% Similarity=0.490 Sum_probs=54.0
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhcccCc----HHHHHHHHHHhccCCCCCCCHHHHHHHH
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVA----ANKKEELFKAADKNGDGVVSVDELAALL 241 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~----~eei~~~F~~~D~d~dG~Is~~E~~~~l 241 (406)
++.+|+.+|.|++|.|+.+||..++..++...+ ++.+..+|+.+|.|+||.|+++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 678999999999999999999999999886543 4556777999999999999999999875
No 105
>PRK00723 phosphatidylserine decarboxylase; Provisional
Probab=98.95 E-value=7.5e-11 Score=113.90 Aligned_cols=73 Identities=29% Similarity=0.296 Sum_probs=67.6
Q ss_pred EEEeeCcccchhhhhccceeEEEEEeeeeccccCCccchHHHHHHH--HhhHHhhcccCCchhhhchhhHHHhcccCCCC
Q 015462 325 ILVFDRRTKRLVEELIDVKIVMSMRAIYQSKIGLGLMDIGTKELLK--SISEKQGRKMNSVESSKEIPKFVNFFKFRLVF 402 (406)
Q Consensus 325 i~~~dr~tg~~~~E~~~~~~~~~~~~ly~~~~~~~~~~~~~~~~~~--~~s~~~g~~~~~~~s~~~i~~fi~~~~~~i~~ 402 (406)
|.|+||+||++++|+++. ...|||||+++.|+ ..++.++. .+|+..||.+++|.|+..|++|++.| +|||
T Consensus 2 ~~~~~r~~~~~~~e~~~~--~~~~~~~y~~~~gr----~~l~~l~~~~~~S~~~G~~~~~~~s~~~I~~f~~~~--~id~ 73 (297)
T PRK00723 2 IKYYNRKTKKYEIEKVAG--EKYLKWLYSSPIGK----NLLELLIKKKIFSKIYGWYCDSRLSRKKIKPFVNDF--NIDM 73 (297)
T ss_pred cEEEECCCCceEEEeccH--HHHHHHHhcCHHHH----HHHHHhcCcHHHHHHHHHHhCCcchHHHHHHHHHHh--CCCH
Confidence 789999999999999998 66899999999998 67777776 39999999999999999999999999 9999
Q ss_pred CCC
Q 015462 403 PSL 405 (406)
Q Consensus 403 ~e~ 405 (406)
+|+
T Consensus 74 ~e~ 76 (297)
T PRK00723 74 SES 76 (297)
T ss_pred HHh
Confidence 986
No 106
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=98.94 E-value=4.4e-09 Score=88.90 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=72.5
Q ss_pred EEEEEEEEEE----c----CCCCCeEEEEEe------cCceeEeeecCCCC-CCcccceEEEEeeeCCCceeEEEEeecc
Q 015462 55 IALLTLISAE----M----KFKDKWLACVSL------GEQTCRTAISDNTD-KPIWNSEKKLLLETNGPHVARISVFETN 119 (406)
Q Consensus 55 ~l~v~v~~a~----~----~~~~dP~v~vs~------g~k~~kT~vi~~tL-nP~wne~~~~~~e~~~~~~l~fsV~D~D 119 (406)
.|+|+|++|+ . ....||||.+.+ ....+||+++.++. ||+|||++.|.........+.++|+|.+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 5899999996 2 356799999998 45678999988775 9999996655544333345899999999
Q ss_pred ccCCCcccCcceeechhcccCCCcchhhhhhccCCCC
Q 015462 120 RLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSS 156 (406)
Q Consensus 120 ~~s~~D~iG~~~l~L~~lLs~~e~~~~e~F~~~D~d~ 156 (406)
.. .++++|.+.+++.++... ...+.+.++.+
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g-----~~~~~l~~~~~ 113 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQG-----YRHVPLLDSKG 113 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCc-----eEEEEecCCCC
Confidence 88 889999999999987321 23455555544
No 107
>PTZ00183 centrin; Provisional
Probab=98.93 E-value=2.1e-09 Score=93.86 Aligned_cols=96 Identities=20% Similarity=0.353 Sum_probs=79.6
Q ss_pred hhhhhccCCCCCcch-hhhhhcccCC---CCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKI-VGKISLSCSV---EDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELF 221 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I-l~~~l~~l~~---~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F 221 (406)
..+|..+|.+++|.| +.+++..+.. ....+ ..++.+|+.+|.+++|.|+.+||..++..++..++.+++..+|
T Consensus 56 ~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~---~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~ 132 (158)
T PTZ00183 56 KQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPR---EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMI 132 (158)
T ss_pred HHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcH---HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 788999999999998 4444332211 12222 2388999999999999999999999999999889999999999
Q ss_pred HHhccCCCCCCCHHHHHHHHHhh
Q 015462 222 KAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 222 ~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
..+|.|++|.|+++||..++...
T Consensus 133 ~~~d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 133 DEADRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHhcc
Confidence 99999999999999999998653
No 108
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.93 E-value=1.1e-09 Score=98.67 Aligned_cols=135 Identities=25% Similarity=0.349 Sum_probs=102.0
Q ss_pred cCCCcch-hhhhhccCCC-CCcchhhhhhcccCCCCChhhHHHHHHHhchhcccCCCCc-eeHHHHHHHHHHhcccCcHH
Q 015462 139 TKDSDAD-SEVFDLLDPS-SSNKIVGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQ-LSFKEFSDLISAFGNQVAAN 215 (406)
Q Consensus 139 s~~e~~~-~e~F~~~D~d-~dG~Il~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~-I~~~Ef~~~l~~lg~~~~~e 215 (406)
+..++.. ...|..+|.+ ++|.+-.+-+..+ |......+..++++.+|.+++|. |+|++|+.++..+....+.+
T Consensus 28 s~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i----~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~ 103 (187)
T KOG0034|consen 28 SANEIERLYERFKKLDRNNGDGYLTKEEFLSI----PELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKR 103 (187)
T ss_pred CHHHHHHHHHHHHHhccccccCccCHHHHHHH----HHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHH
Confidence 3344444 7899999999 8888833322222 12233455788999999999988 99999999999977666655
Q ss_pred -HHHHHHHHhccCCCCCCCHHHHHHHHHhhcc-cCc--cccCchhHHHhhhhccccCCeeeEeeecccC
Q 015462 216 -KKEELFKAADKNGDGVVSVDELAALLALQQE-KEP--LMNCCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 216 -ei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e-~~~--~~~~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
.++-+|+.||.|++|+|+.+|+.+++..+.. ... +...-.++...+.++|.++| +.|+++||
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~D---G~IsfeEf 169 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGD---GKISFEEF 169 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCC---CcCcHHHH
Confidence 8999999999999999999999999988643 222 21112347777999999999 89999887
No 109
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=98.89 E-value=4.7e-09 Score=81.38 Aligned_cols=75 Identities=24% Similarity=0.344 Sum_probs=63.0
Q ss_pred EEEEEEEEE------cCCCCCeEEEEEecC---ceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcc
Q 015462 56 ALLTLISAE------MKFKDKWLACVSLGE---QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (406)
Q Consensus 56 l~v~v~~a~------~~~~~dP~v~vs~g~---k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~ 126 (406)
|.|+|.+|+ .....+||+.+.++. ..++|+++.++.+|.|||++.|.+.......+.|+|||++.++.++.
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 689999997 244679999999976 67999999999999999977776555445559999999999998999
Q ss_pred cCcc
Q 015462 127 EGYC 130 (406)
Q Consensus 127 iG~~ 130 (406)
+|.+
T Consensus 81 iG~~ 84 (85)
T PF00168_consen 81 IGEV 84 (85)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9975
No 110
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.9e-09 Score=107.09 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=73.6
Q ss_pred CCccEEEEEEEEEEE----c--CCCCCeEEEEEe---cCceeEeeecCCCCCCcccceEEEEee--eCCCceeEEEEeec
Q 015462 50 EDFAGIALLTLISAE----M--KFKDKWLACVSL---GEQTCRTAISDNTDKPIWNSEKKLLLE--TNGPHVARISVFET 118 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~----~--~~~~dP~v~vs~---g~k~~kT~vi~~tLnP~wne~~~~~~e--~~~~~~l~fsV~D~ 118 (406)
+.....|.|+|++|+ + ++.+||||.+.+ .+.+++|++.+++|||+|||+|.|-+. ......+.|+|||.
T Consensus 163 d~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~ 242 (421)
T KOG1028|consen 163 DFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDF 242 (421)
T ss_pred cccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEec
Confidence 457788999999996 3 455799999987 346899999999999999996666432 23477899999999
Q ss_pred cccCCCcccCcceeechhcc
Q 015462 119 NRLSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 119 D~~s~~D~iG~~~l~L~~lL 138 (406)
|+|++||.+|++.+++..+-
T Consensus 243 drfsr~~~iGev~~~l~~~~ 262 (421)
T KOG1028|consen 243 DRFSRHDFIGEVILPLGEVD 262 (421)
T ss_pred CCcccccEEEEEEecCcccc
Confidence 99999999999999977653
No 111
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.86 E-value=8.4e-09 Score=100.60 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=32.9
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcccCc
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQEKEP 249 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~~~ 249 (406)
...+|+.+|.|.||.+||+||...+.. .+.++..+|+..|.++||.|+.+|+.+.+++.|..+.
T Consensus 53 ~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~ 116 (463)
T KOG0036|consen 53 AKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLS 116 (463)
T ss_pred HHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccC
Confidence 444555555555555555555555433 3344555555555555555555555555555544433
No 112
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=98.86 E-value=7.3e-09 Score=86.20 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=64.3
Q ss_pred EEEEEEEEE---cCCCCCeEEEEEecCc-eeEeeecCCCCCCcccceEEEEeeeCC--CceeEEEEeeccccCCCcccCc
Q 015462 56 ALLTLISAE---MKFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNG--PHVARISVFETNRLSKSNLEGY 129 (406)
Q Consensus 56 l~v~v~~a~---~~~~~dP~v~vs~g~k-~~kT~vi~~tLnP~wne~~~~~~e~~~--~~~l~fsV~D~D~~s~~D~iG~ 129 (406)
|.|+|++|+ ..+.+||||+|.++.+ .++|+++++ +||.|||+|.|.+.... ...+.+.++|.+....++.+|.
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~ 80 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGK 80 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEE
Confidence 789999996 1267899999999874 589999988 99999995555433221 2457788888877666666666
Q ss_pred ceeechhcccCCCcchhhhhhccCCCC
Q 015462 130 CEVDLLEFLTKDSDADSEVFDLLDPSS 156 (406)
Q Consensus 130 ~~l~L~~lLs~~e~~~~e~F~~~D~d~ 156 (406)
+.++.... .... ..+|.+.+.+.
T Consensus 81 v~l~~~~~--~~~~--~~w~~L~~~~~ 103 (117)
T cd08383 81 VALSKLDL--GQGK--DEWFPLTPVDP 103 (117)
T ss_pred EEecCcCC--CCcc--eeEEECccCCC
Confidence 55443322 1111 35666655444
No 113
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=98.86 E-value=1.5e-08 Score=87.93 Aligned_cols=103 Identities=16% Similarity=0.251 Sum_probs=79.2
Q ss_pred ccEEEEEEEEEEE-cCCCCCeEEEEEecCce-eEeeecCCCCCCcccceEEEEeeeC-CCceeEEEEeeccc-cC---CC
Q 015462 52 FAGIALLTLISAE-MKFKDKWLACVSLGEQT-CRTAISDNTDKPIWNSEKKLLLETN-GPHVARISVFETNR-LS---KS 124 (406)
Q Consensus 52 ~~g~l~v~v~~a~-~~~~~dP~v~vs~g~k~-~kT~vi~~tLnP~wne~~~~~~e~~-~~~~l~fsV~D~D~-~s---~~ 124 (406)
+.-.|.|.|++|+ +..+.+|||.|.+++.. .||+++.+++||.|+| .|.|... ....+.|.|++.+. .+ .+
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E--~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~ 86 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKKRYYCELCLDKTLYARTTSKLKTDTLFWGE--HFEFSNLPPVSVITVNLYRESDKKKKKDKS 86 (146)
T ss_pred EEEEEEEEEEEccCCCCcCCceEEEEECCEEEEEEEEEcCCCCCccee--eEEecCCCcccEEEEEEEEccCccccccCC
Confidence 4678999999997 55677899999998877 5999999999999999 5555532 23458899975443 22 57
Q ss_pred cccCcceeechhcccCCCcchhhhhhccCCCCCc
Q 015462 125 NLEGYCEVDLLEFLTKDSDADSEVFDLLDPSSSN 158 (406)
Q Consensus 125 D~iG~~~l~L~~lLs~~e~~~~e~F~~~D~d~dG 158 (406)
+.+|.+.|++.++...... ..+|.+.+.+++.
T Consensus 87 ~~IG~V~Ip~~~l~~~~~v--e~Wfpl~~~~~~~ 118 (146)
T cd04013 87 QLIGTVNIPVTDVSSRQFV--EKWYPVSTPKGNG 118 (146)
T ss_pred cEEEEEEEEHHHhcCCCcc--cEEEEeecCCCCC
Confidence 8999999999998854443 5788887776553
No 114
>PLN03008 Phospholipase D delta
Probab=98.85 E-value=4.6e-09 Score=111.71 Aligned_cols=86 Identities=14% Similarity=0.254 Sum_probs=68.9
Q ss_pred CCCCCeEEEEEecCc-eeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccCcceeechhcccCCCcc
Q 015462 66 KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDA 144 (406)
Q Consensus 66 ~~~~dP~v~vs~g~k-~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG~~~l~L~~lLs~~e~~ 144 (406)
...+||||+|.++++ +.||+++++++||+|||+|.|.+.+ ....+.|+|+|+|.++. |.||.+.+++.+++..+..
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah-~~s~L~f~VkD~D~~ga-D~IG~a~IPL~~L~~Ge~v- 150 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAH-PFAYLEFQVKDDDVFGA-QIIGTAKIPVRDIASGERI- 150 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecC-CCceEEEEEEcCCccCC-ceeEEEEEEHHHcCCCCce-
Confidence 467899999999875 6799999999999999977666554 24579999999999974 8999999999998765554
Q ss_pred hhhhhhccCCC
Q 015462 145 DSEVFDLLDPS 155 (406)
Q Consensus 145 ~~e~F~~~D~d 155 (406)
..++.+++.+
T Consensus 151 -d~Wl~Ll~~~ 160 (868)
T PLN03008 151 -SGWFPVLGAS 160 (868)
T ss_pred -EEEEEccccC
Confidence 2455555544
No 115
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.84 E-value=1.2e-08 Score=80.92 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=60.3
Q ss_pred HHHHhchhccc-CCCCceeHHHHHHHHHH-hcccCcH-HHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 180 FARRILSIVDY-NQDGQLSFKEFSDLISA-FGNQVAA-NKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 180 ~~~~~f~~~D~-d~dG~I~~~Ef~~~l~~-lg~~~~~-eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
-+..+|+.||. +++|+|+..||..++.. ++..+++ ++++++++.+|.|+||.|+++||..++..+
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 37889999999 99999999999999999 8887888 999999999999999999999999998664
No 116
>PTZ00184 calmodulin; Provisional
Probab=98.81 E-value=1.4e-08 Score=87.44 Aligned_cols=94 Identities=16% Similarity=0.385 Sum_probs=78.0
Q ss_pred hhhhhccCCCCCcch-hhhhhcccCC---CCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKI-VGKISLSCSV---EDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELF 221 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I-l~~~l~~l~~---~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F 221 (406)
..+|..+|.+++|.+ +.+++..+.. ..... ..+..+|+.+|.+++|.|+.+||..++..++...+.+++..+|
T Consensus 50 ~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~---~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 126 (149)
T PTZ00184 50 QDMINEVDADGNGTIDFPEFLTLMARKMKDTDSE---EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 126 (149)
T ss_pred HHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHH---HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 789999999999998 4444433321 11222 2378999999999999999999999999988888999999999
Q ss_pred HHhccCCCCCCCHHHHHHHHH
Q 015462 222 KAADKNGDGVVSVDELAALLA 242 (406)
Q Consensus 222 ~~~D~d~dG~Is~~E~~~~l~ 242 (406)
..+|.+++|.|+++||+.++.
T Consensus 127 ~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 127 READVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HhcCCCCCCcCcHHHHHHHHh
Confidence 999999999999999998873
No 117
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=1.8e-08 Score=86.52 Aligned_cols=94 Identities=19% Similarity=0.411 Sum_probs=79.7
Q ss_pred hhhhhccCCCCCcch-hhhh----hcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKI-VGKI----SLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEEL 220 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I-l~~~----l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~ 220 (406)
.++...+|.++.|.| +.++ ...++... +..+ +..+|+.+|.|++|.|++.+|..+...||++++++++.++
T Consensus 72 ~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d-t~eE---i~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eM 147 (172)
T KOG0028|consen 72 LKLLADVDKEGSGKITFEDFRRVMTVKLGERD-TKEE---IKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEM 147 (172)
T ss_pred HHHHHhhhhccCceechHHHHHHHHHHHhccC-cHHH---HHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHH
Confidence 667888899999999 3222 23334323 3344 8999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCHHHHHHHHHh
Q 015462 221 FKAADKNGDGVVSVDELAALLAL 243 (406)
Q Consensus 221 F~~~D~d~dG~Is~~E~~~~l~~ 243 (406)
...+|.|++|.|+-+||..+|+.
T Consensus 148 IeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 148 IEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHhcccccccccHHHHHHHHhc
Confidence 99999999999999999999864
No 118
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.78 E-value=7.7e-09 Score=93.28 Aligned_cols=99 Identities=18% Similarity=0.310 Sum_probs=75.0
Q ss_pred hhhhhccCCCCCcch-hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHh----cc-------cCc
Q 015462 146 SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF----GN-------QVA 213 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I-l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l----g~-------~~~ 213 (406)
..+|+.+|.+++|.| +.+++.++........ .+.++-+|+.||.|++|+|+++|+..++..+ +. ..+
T Consensus 67 ~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~-eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~ 145 (193)
T KOG0044|consen 67 ELVFRTFDKNKDGTIDFLEFICALSLTSRGTL-EEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETP 145 (193)
T ss_pred HHHHHHhcccCCCCcCHHHHHHHHHHHcCCcH-HHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccH
Confidence 789999999999999 5555554432111111 1225566999999999999999999988763 21 123
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 015462 214 ANKKEELFKAADKNGDGVVSVDELAALLALQQ 245 (406)
Q Consensus 214 ~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~ 245 (406)
++.+..+|+.+|.|+||.||.+||.......+
T Consensus 146 ~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~ 177 (193)
T KOG0044|consen 146 EERVDKIFSKMDKNKDGKLTLEEFIEGCKADP 177 (193)
T ss_pred HHHHHHHHHHcCCCCCCcccHHHHHHHhhhCH
Confidence 46799999999999999999999999886643
No 119
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.72 E-value=4.8e-08 Score=83.29 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=67.2
Q ss_pred EEEEEEEEE--------cCC--CCCeEEEEEec---CceeEeeecCCCCC--CcccceEEEEeee---------------
Q 015462 56 ALLTLISAE--------MKF--KDKWLACVSLG---EQTCRTAISDNTDK--PIWNSEKKLLLET--------------- 105 (406)
Q Consensus 56 l~v~v~~a~--------~~~--~~dP~v~vs~g---~k~~kT~vi~~tLn--P~wne~~~~~~e~--------------- 105 (406)
|+|.|.+|+ ..+ .+||||++.+- ..+.+|.++.+++| |+||+.|.|.+..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 788888885 133 37999999873 46789999999999 9999944443332
Q ss_pred --------CCCceeEEEEeeccccCCCcccCcceeechhcccCC
Q 015462 106 --------NGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKD 141 (406)
Q Consensus 106 --------~~~~~l~fsV~D~D~~s~~D~iG~~~l~L~~lLs~~ 141 (406)
-.+..+.++|||.|.++.+|++|.+.+++..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 114458999999999999999999999999876544
No 120
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.71 E-value=4.2e-08 Score=88.38 Aligned_cols=99 Identities=21% Similarity=0.392 Sum_probs=78.2
Q ss_pred hhhhhccCCCCCcc-h-hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHh-cccCc--H----HH
Q 015462 146 SEVFDLLDPSSSNK-I-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF-GNQVA--A----NK 216 (406)
Q Consensus 146 ~e~F~~~D~d~dG~-I-l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l-g~~~~--~----ee 216 (406)
..+++.+|++++|. | +++++..+..-.+......-++-+|+.||.+++|.|+.+|+..++..+ +...+ + +.
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 68999999998888 7 666666654433333333348889999999999999999999999884 44444 3 34
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 217 KEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 217 i~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
++..|..+|.|+||.|+++||..++...
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 7778999999999999999999999664
No 121
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.69 E-value=6.2e-08 Score=76.82 Aligned_cols=64 Identities=19% Similarity=0.327 Sum_probs=59.1
Q ss_pred HHHhchhcc-cCCCC-ceeHHHHHHHHHH-----hcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 181 ARRILSIVD-YNQDG-QLSFKEFSDLISA-----FGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 181 ~~~~f~~~D-~d~dG-~I~~~Ef~~~l~~-----lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
+..+|+.|| .|++| .|+.+||..+|.. ++...++++++++++.+|.|++|.|+++||..++...
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 788999998 79999 5999999999999 7888888999999999999999999999999988653
No 122
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.67 E-value=7.3e-08 Score=87.00 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=93.8
Q ss_pred hhhhhccCCCCCcch-hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 015462 146 SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAA 224 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I-l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~ 224 (406)
+-+..+||.+++|+| +.++..-... ..-|+.+|+.+|.|++|.|+..||..+|..+|..++++-...+++.|
T Consensus 97 rlmI~mfd~~~~G~i~f~EF~~Lw~~-------i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~ky 169 (221)
T KOG0037|consen 97 RLMISMFDRDNSGTIGFKEFKALWKY-------INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKY 169 (221)
T ss_pred HHHHHHhcCCCCCccCHHHHHHHHHH-------HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHh
Confidence 678889999999999 4443322211 22299999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHhhcccCccccCchhHHHhhhhccccCCeeeEeeecccC
Q 015462 225 DKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 225 D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
|.-++|.|.+++|++++..+ +.+-+.+++.|...... ..+.+++|
T Consensus 170 d~~~~g~i~FD~FI~ccv~L----------~~lt~~Fr~~D~~q~G~-i~~~y~df 214 (221)
T KOG0037|consen 170 DRFGGGRIDFDDFIQCCVVL----------QRLTEAFRRRDTAQQGS-ITISYDDF 214 (221)
T ss_pred ccccCCceeHHHHHHHHHHH----------HHHHHHHHHhcccccee-EEEeHHHH
Confidence 98889999999999998654 24556677777665543 55666665
No 123
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.65 E-value=1.7e-07 Score=74.25 Aligned_cols=85 Identities=24% Similarity=0.341 Sum_probs=67.8
Q ss_pred EEEEEEEEE----c--CCCCCeEEEEEecCc---eeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcc
Q 015462 56 ALLTLISAE----M--KFKDKWLACVSLGEQ---TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (406)
Q Consensus 56 l~v~v~~a~----~--~~~~dP~v~vs~g~k---~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~ 126 (406)
|.|+|++|+ . ....+|||.+..... ..+|+++.++.||.||+++.|.+.......+.++|||.+....+..
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 678899996 1 235799999999764 8999999999999999955554433226779999999998777889
Q ss_pred cCcceeechhcccC
Q 015462 127 EGYCEVDLLEFLTK 140 (406)
Q Consensus 127 iG~~~l~L~~lLs~ 140 (406)
+|.+.+++.++...
T Consensus 82 ~G~~~~~l~~~~~~ 95 (101)
T smart00239 82 IGQVTIPLSDLLLG 95 (101)
T ss_pred eEEEEEEHHHcccC
Confidence 99999998887543
No 124
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.62 E-value=1.1e-07 Score=68.02 Aligned_cols=52 Identities=29% Similarity=0.630 Sum_probs=48.4
Q ss_pred CCCceeHHHHHHHHHHhccc-CcHHHHHHHHHHhccCCCCCCCHHHHHHHHHh
Q 015462 192 QDGQLSFKEFSDLISAFGNQ-VAANKKEELFKAADKNGDGVVSVDELAALLAL 243 (406)
Q Consensus 192 ~dG~I~~~Ef~~~l~~lg~~-~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~ 243 (406)
.+|.|+.+||..+|..+|.. .+++++..+|..+|.|++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999778888 99999999999999999999999999999864
No 125
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.59 E-value=1.5e-07 Score=75.52 Aligned_cols=64 Identities=25% Similarity=0.285 Sum_probs=57.4
Q ss_pred HHHhchhccc-CC-CCceeHHHHHHHHHH-----hcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 181 ARRILSIVDY-NQ-DGQLSFKEFSDLISA-----FGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 181 ~~~~f~~~D~-d~-dG~I~~~Ef~~~l~~-----lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
+..+|..||. |+ +|.|+.+|+..++.. ++...++++++.+|+.+|.|++|.|+++||..++...
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 7889999997 97 699999999999976 4556788999999999999999999999999998654
No 126
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.57 E-value=3e-07 Score=73.74 Aligned_cols=64 Identities=23% Similarity=0.299 Sum_probs=55.2
Q ss_pred HHHhchhcc-cCCCC-ceeHHHHHHHHHH-h----cccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 181 ARRILSIVD-YNQDG-QLSFKEFSDLISA-F----GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 181 ~~~~f~~~D-~d~dG-~I~~~Ef~~~l~~-l----g~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
+..+|+.|| .|++| +|+.+||..++.. + ....++.+++++++.+|.|++|.|+++||..++..+
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 667899999 78998 5999999999976 3 233467899999999999999999999999999664
No 127
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.56 E-value=3.2e-07 Score=72.74 Aligned_cols=64 Identities=23% Similarity=0.315 Sum_probs=57.7
Q ss_pred HHHhchhccc-CC-CCceeHHHHHHHHHH---hcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 181 ARRILSIVDY-NQ-DGQLSFKEFSDLISA---FGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 181 ~~~~f~~~D~-d~-dG~I~~~Ef~~~l~~---lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
+-.+|..||. |+ +|+|+.+||..++.. +|...+++++.++|+.+|.|++|.|+++||..++..+
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 5678999998 77 799999999999963 6888899999999999999999999999999998654
No 128
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.55 E-value=3.7e-07 Score=73.54 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=59.0
Q ss_pred HHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 177 EKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 177 e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
+...+..+|+.+|.|++|.|+.+|+..++...+ .++++++++|..+|.+++|.|+++||..++...
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 344589999999999999999999999998865 578899999999999999999999999988653
No 129
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.55 E-value=2.4e-07 Score=66.59 Aligned_cols=61 Identities=25% Similarity=0.561 Sum_probs=57.1
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHH
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALL 241 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l 241 (406)
+..+|..+|.+++|.|+++||..++..++...+.+.+..+|..+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999988899999999999999999999999998765
No 130
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.54 E-value=2.5e-07 Score=68.75 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=54.9
Q ss_pred HHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 182 RRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 182 ~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
+.+|+.+|.|++|.|+.+|+..++..++. +.++++.+|..+|.+++|.|+++||+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 46789999999999999999999988764 78899999999999999999999999988643
No 131
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.54 E-value=1.7e-07 Score=101.75 Aligned_cols=94 Identities=22% Similarity=0.246 Sum_probs=76.8
Q ss_pred ccCCccEEEEEEEEEEE------cCCCCCeEEEEEecCc-eeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccc
Q 015462 48 NEEDFAGIALLTLISAE------MKFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNR 120 (406)
Q Consensus 48 ~~~~~~g~l~v~v~~a~------~~~~~dP~v~vs~g~k-~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~ 120 (406)
+.=.-.|-|.|.+++|+ -.+.+||||++.+..+ .|+|++++++|||+|||++...+.......+.+.|+|||.
T Consensus 1034 emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~ 1113 (1227)
T COG5038 1034 EMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDS 1113 (1227)
T ss_pred eeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeeccc
Confidence 33345899999999995 3566799999999665 8999999999999999955554443346679999999999
Q ss_pred cCCCcccCcceeechhcccCC
Q 015462 121 LSKSNLEGYCEVDLLEFLTKD 141 (406)
Q Consensus 121 ~s~~D~iG~~~l~L~~lLs~~ 141 (406)
-.++|.+|.+.+++..+....
T Consensus 1114 ~~knd~lg~~~idL~~l~~~~ 1134 (1227)
T COG5038 1114 GEKNDLLGTAEIDLSKLEPGG 1134 (1227)
T ss_pred CCCccccccccccHhhcCcCC
Confidence 999999999999998875433
No 132
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=9e-08 Score=91.10 Aligned_cols=139 Identities=25% Similarity=0.329 Sum_probs=97.9
Q ss_pred ccCCCcch--hhhhhccCCCCCcch-hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhc-----
Q 015462 138 LTKDSDAD--SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG----- 209 (406)
Q Consensus 138 Ls~~e~~~--~e~F~~~D~d~dG~I-l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg----- 209 (406)
+++.+... ..++..+|.+++|.+ ..++...+.. .....-......-+..+|.|.||.|+|+|+...+....
T Consensus 70 l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~-s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~ 148 (325)
T KOG4223|consen 70 LTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQ-SQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDE 148 (325)
T ss_pred hCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccc
Confidence 44444444 788999999999998 2222222211 11111122256677889999999999999999876421
Q ss_pred ---ccCcH------HHHHHHHHHhccCCCCCCCHHHHHHHHHhhcccCccccCchhHHHhhhhccccCCeeeEeeecccC
Q 015462 210 ---NQVAA------NKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 210 ---~~~~~------eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
..... ..-++-|+..|.|+||.+|.+||..+| +|+..+.+... +|.+.+...|.++| |.|+++||
T Consensus 149 ~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFL--HPEe~p~M~~i-Vi~Etl~d~Dkn~D---G~I~~eEf 222 (325)
T KOG4223|consen 149 FPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFL--HPEEHPHMKDI-VIAETLEDIDKNGD---GKISLEEF 222 (325)
T ss_pred cccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhcc--ChhhcchHHHH-HHHHHHhhcccCCC---CceeHHHH
Confidence 11111 124567999999999999999999999 78877665443 68888999999999 99999998
Q ss_pred ccc
Q 015462 281 TGN 283 (406)
Q Consensus 281 ~~~ 283 (406)
...
T Consensus 223 igd 225 (325)
T KOG4223|consen 223 IGD 225 (325)
T ss_pred HhH
Confidence 443
No 133
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.51 E-value=4.9e-07 Score=72.25 Aligned_cols=65 Identities=29% Similarity=0.432 Sum_probs=57.3
Q ss_pred HHHHhchhcc-cCCCC-ceeHHHHHHHHHH-hcc----cCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 180 FARRILSIVD-YNQDG-QLSFKEFSDLISA-FGN----QVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 180 ~~~~~f~~~D-~d~dG-~I~~~Ef~~~l~~-lg~----~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
.++++|+.|| .|++| .|+..||..+|.. ++. ..++++++++|+.+|.|++|.|+++||..++...
T Consensus 10 ~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 10 TLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3889999997 99999 5999999999975 543 3578899999999999999999999999998654
No 134
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.51 E-value=5.8e-07 Score=70.71 Aligned_cols=83 Identities=29% Similarity=0.428 Sum_probs=67.0
Q ss_pred EEEEEEEEE------cCCCCCeEEEEEecC-ceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccC
Q 015462 56 ALLTLISAE------MKFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEG 128 (406)
Q Consensus 56 l~v~v~~a~------~~~~~dP~v~vs~g~-k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG 128 (406)
|.|.|++|+ .....+|||.+.+.. ...+|+++..++||.||+.+.+.+.......+.++|+|.+.......+|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 468888885 235679999999987 8999999999999999994444333323567899999999888889999
Q ss_pred cceeechhcc
Q 015462 129 YCEVDLLEFL 138 (406)
Q Consensus 129 ~~~l~L~~lL 138 (406)
.+.+++..+.
T Consensus 81 ~~~~~l~~l~ 90 (102)
T cd00030 81 EVEIPLSELL 90 (102)
T ss_pred EEEEeHHHhh
Confidence 9999988865
No 135
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.44 E-value=7.8e-07 Score=70.36 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=57.3
Q ss_pred HHHHhchhccc--CCCCceeHHHHHHHHHH-hcccC----cHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 180 FARRILSIVDY--NQDGQLSFKEFSDLISA-FGNQV----AANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 180 ~~~~~f~~~D~--d~dG~I~~~Ef~~~l~~-lg~~~----~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
.++.+|..+|. |++|.|+.+||..++.. ++... +.++++.+|..+|.|++|.|+++||+.++...
T Consensus 9 ~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 9 TIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 37889999999 89999999999999976 45433 48899999999999999999999999998765
No 136
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.41 E-value=1.2e-07 Score=80.03 Aligned_cols=117 Identities=27% Similarity=0.374 Sum_probs=91.8
Q ss_pred ChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcH-HHHHHHHHHhccCCCCCCCHHHHHHHHHhhccc-Ccc
Q 015462 173 PIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAA-NKKEELFKAADKNGDGVVSVDELAALLALQQEK-EPL 250 (406)
Q Consensus 173 ~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~-eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~-~~~ 250 (406)
|.-.+++|-+++.+.|..||.|.++|++|+.++..+.+..+. -.+.-+|+.||-|+|++|-.++|...++.+... .+.
T Consensus 65 PELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~ 144 (189)
T KOG0038|consen 65 PELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSD 144 (189)
T ss_pred hhhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCH
Confidence 444456778889999999999999999999999887665543 356778999999999999999999999887422 222
Q ss_pred ccCchhHHHhhhhccccCCeeeEeeecccCcccccccCCCcC
Q 015462 251 MNCCPVCGETLEVADMVNTMIHLTLCFDEGTGNQVMTGGFLT 292 (406)
Q Consensus 251 ~~~cp~~~~~l~~~D~~~diih~~ic~def~~~~~~~~~fvt 292 (406)
.+...+|..++.++|-++| +.+++.+|....+-.|.|++
T Consensus 145 eEv~~i~ekvieEAD~DgD---gkl~~~eFe~~i~raPDFls 183 (189)
T KOG0038|consen 145 EEVELICEKVIEEADLDGD---GKLSFAEFEHVILRAPDFLS 183 (189)
T ss_pred HHHHHHHHHHHHHhcCCCC---CcccHHHHHHHHHhCcchHh
Confidence 2233468999999999999 88999888655555677765
No 137
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.40 E-value=3e-07 Score=92.87 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=78.7
Q ss_pred cEEEEEEEEEEE----cCCCC---CeEEEEEecCceeEeeecCCCCCCcccc-eEEEEeeeC--CCceeEEEEeeccccC
Q 015462 53 AGIALLTLISAE----MKFKD---KWLACVSLGEQTCRTAISDNTDKPIWNS-EKKLLLETN--GPHVARISVFETNRLS 122 (406)
Q Consensus 53 ~g~l~v~v~~a~----~~~~~---dP~v~vs~g~k~~kT~vi~~tLnP~wne-~~~~~~e~~--~~~~l~fsV~D~D~~s 122 (406)
-|.|-|+|+.|+ |+..+ |.||.|.+++.+|||.+..++|||.||. .|+|.+++. .+..+++.++|+|.++
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 378889999996 44333 7899999999999999999999999995 456655432 2556999999999999
Q ss_pred CCcccCcceeechhcccCCCcc-------h-hhhhhccCCC
Q 015462 123 KSNLEGYCEVDLLEFLTKDSDA-------D-SEVFDLLDPS 155 (406)
Q Consensus 123 ~~D~iG~~~l~L~~lLs~~e~~-------~-~e~F~~~D~d 155 (406)
.+|.+|.+.|++..+.-.+... - .-+|-.||+-
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti 122 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI 122 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec
Confidence 9999999999988764222211 1 3466677654
No 138
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.38 E-value=1.8e-06 Score=68.64 Aligned_cols=64 Identities=23% Similarity=0.288 Sum_probs=55.3
Q ss_pred HHHhchh-cccCCCC-ceeHHHHHHHHHHh-----cccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 181 ARRILSI-VDYNQDG-QLSFKEFSDLISAF-----GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 181 ~~~~f~~-~D~d~dG-~I~~~Ef~~~l~~l-----g~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
|..+|+. +|.+++| +|+.+||..++... +....+.++.++++.+|.|+||.|+++||+.++..+
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 7788888 7788886 99999999999874 334567899999999999999999999999998664
No 139
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.37 E-value=1.4e-06 Score=85.43 Aligned_cols=183 Identities=18% Similarity=0.271 Sum_probs=121.1
Q ss_pred hhhhhccCCCCCcch-hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 015462 146 SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAA 224 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I-l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~ 224 (406)
..+|...|.|.||.+ +.++.+-+ ...+.+ +..+|+..|.+.||.|+.+|....+..+|..++++++..+|+..
T Consensus 54 ~~l~~~~d~~~dg~vDy~eF~~Y~---~~~E~~---l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~ 127 (463)
T KOG0036|consen 54 KMLFSAMDANRDGRVDYSEFKRYL---DNKELE---LYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHM 127 (463)
T ss_pred HHHHHhcccCcCCcccHHHHHHHH---HHhHHH---HHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHh
Confidence 788999999999998 55554433 223444 78899999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHhhcccCccccCchhHHHhhhhccccCCeeeE-eeecccCcccccccCCCcCchhhhhhhHhh
Q 015462 225 DKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHL-TLCFDEGTGNQVMTGGFLTDKQASNVWMFK 303 (406)
Q Consensus 225 D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~~l~~~D~~~diih~-~ic~def~~~~~~~~~fvt~~~a~~~w~~k 303 (406)
|+||++.|+++|+.+.+.-.++.. +..++.- .. |. -+.+.| +..+..+|++-..-+..|+-.
T Consensus 128 d~~g~~~I~~~e~rd~~ll~p~s~--------i~di~~~-W~-----h~~~idigE---~~~iPdg~s~~e~~~g~ww~~ 190 (463)
T KOG0036|consen 128 DKDGKATIDLEEWRDHLLLYPESD--------LEDIYDF-WR-----HVLLIDIGE---DAVLPDGDSKLENDSGRWWGF 190 (463)
T ss_pred ccCCCeeeccHHHHhhhhcCChhH--------HHHHHHh-hh-----hheEEEccc---cccCCcchHHHHhcccchhhh
Confidence 999999999999999986655221 2222100 00 11 133333 334557777777777788877
Q ss_pred hhhcccccccccccCCCCcee-------EEEeeCcccchh--hhhccceeEEEEEeeeecc
Q 015462 304 LSEWGHFSSYDVGLNSGSRAH-------ILVFDRRTKRLV--EELIDVKIVMSMRAIYQSK 355 (406)
Q Consensus 304 ~~~k~~~~~y~~g~~~~~~~~-------i~~~dr~tg~~~--~E~~~~~~~~~~~~ly~~~ 355 (406)
++.=...|.-+--| .|. .+|+..+|+.+- .=--..|-+.|++-+|.+-
T Consensus 191 liAGGiAGavSRTc----TAPlDRLKV~lqv~~~k~~~~~v~~~~k~l~~eggiksf~rGN 247 (463)
T KOG0036|consen 191 LIAGGIAGAVSRTC----TAPLDRLKVFLQVQSPKANILPLLKAVKSLWREGGIKSFFRGN 247 (463)
T ss_pred hccccccccccccc----cCchhhhheeeeccCCCCCcccHHHHHHHHHhccCceeeeccC
Confidence 65333222221111 111 266666666421 1111123466777777643
No 140
>PLN02223 phosphoinositide phospholipase C
Probab=98.37 E-value=1.4e-06 Score=89.54 Aligned_cols=87 Identities=16% Similarity=0.257 Sum_probs=68.7
Q ss_pred ccEEEEEEEEEEE-c--C--------CCCCeEEEEEec-----CceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEE
Q 015462 52 FAGIALLTLISAE-M--K--------FKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISV 115 (406)
Q Consensus 52 ~~g~l~v~v~~a~-~--~--------~~~dP~v~vs~g-----~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV 115 (406)
+.-+|.|+|+.|. + . ...||||.|.+. ....+|.+..++.||+|||+|.|.+....--.++|.|
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V 486 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEV 486 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEE
Confidence 4568999999996 1 1 235899999862 2356888888999999999777666554444589999
Q ss_pred eeccccCCCcccCcceeechhcc
Q 015462 116 FETNRLSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 116 ~D~D~~s~~D~iG~~~l~L~~lL 138 (406)
+|.|..+.+|++|...+++..+.
T Consensus 487 ~D~D~~~~ddfiGQ~~LPv~~Lr 509 (537)
T PLN02223 487 YDYEVSTADAFCGQTCLPVSELI 509 (537)
T ss_pred EecCCCCCCcEEEEEecchHHhc
Confidence 99999899999999999988864
No 141
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.34 E-value=1.1e-06 Score=95.68 Aligned_cols=89 Identities=20% Similarity=0.314 Sum_probs=75.7
Q ss_pred CccEEEEEEEEEEE--------cCCCCCeEEEEEecC-ceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeecccc
Q 015462 51 DFAGIALLTLISAE--------MKFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRL 121 (406)
Q Consensus 51 ~~~g~l~v~v~~a~--------~~~~~dP~v~vs~g~-k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~ 121 (406)
...|+|.|+|.+|+ ++...|||+.+.+.. -.-||++.++++||+|||++-++++. ....+.+++||.+.+
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns-~~d~L~LslyD~n~~ 511 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNS-FTDPLNLSLYDFNSF 511 (1227)
T ss_pred CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecc-cCCceeEEEEecccc
Confidence 46899999999996 477889999998744 34499999999999999987777764 467799999999999
Q ss_pred CCCcccCcceeechhcccC
Q 015462 122 SKSNLEGYCEVDLLEFLTK 140 (406)
Q Consensus 122 s~~D~iG~~~l~L~~lLs~ 140 (406)
..++.+|...++|..+...
T Consensus 512 ~sd~vvG~~~l~L~~L~~~ 530 (1227)
T COG5038 512 KSDKVVGSTQLDLALLHQN 530 (1227)
T ss_pred CCcceeeeEEechHHhhhc
Confidence 9999999999998887543
No 142
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1.2e-06 Score=89.02 Aligned_cols=85 Identities=18% Similarity=0.259 Sum_probs=67.5
Q ss_pred CCccEEEEEEEEEEE------cCCCCCeEEEEEe---c--CceeEeeecCCCCCCcccceEEEEeeeC----CCceeEEE
Q 015462 50 EDFAGIALLTLISAE------MKFKDKWLACVSL---G--EQTCRTAISDNTDKPIWNSEKKLLLETN----GPHVARIS 114 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~~~~~dP~v~vs~---g--~k~~kT~vi~~tLnP~wne~~~~~~e~~----~~~~l~fs 114 (406)
-+..|.|.|.|++|+ .+.-.||||++.+ + .++.||.+.++++||+||| .|+|+.. ....+.++
T Consensus 294 ~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~ne--sf~F~vp~~~l~~~~l~l~ 371 (421)
T KOG1028|consen 294 LPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNE--TFVFDVPPEQLAEVSLELT 371 (421)
T ss_pred ecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccc--cEEEeCCHHHhheeEEEEE
Confidence 456899999999996 4666789999876 2 2456899999999999999 5555432 13358999
Q ss_pred EeeccccCCCcccCcceeechh
Q 015462 115 VFETNRLSKSNLEGYCEVDLLE 136 (406)
Q Consensus 115 V~D~D~~s~~D~iG~~~l~L~~ 136 (406)
|||+|.++.++.+|.|.+....
T Consensus 372 V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 372 VWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEcccccccceeeEEEecCCC
Confidence 9999999999999988776553
No 143
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.32 E-value=6.7e-07 Score=66.53 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=47.0
Q ss_pred hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLI 205 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l 205 (406)
+++|+.+|.+++|.| +..++..++...+.......++.+|+.+|.|+||.|+++||..++
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478999999999999 555556655433333444568888999999999999999999875
No 144
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.32 E-value=1.8e-06 Score=71.95 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=51.8
Q ss_pred HHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHH
Q 015462 180 FARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALL 241 (406)
Q Consensus 180 ~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l 241 (406)
.+.-+|..+|.|+||.|+.+|+..+. + ...+..+..+|..+|.|+||.||++||..++
T Consensus 49 ~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 49 PVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 37889999999999999999999876 2 3346778999999999999999999999999
No 145
>PLN02952 phosphoinositide phospholipase C
Probab=98.26 E-value=3.4e-06 Score=88.25 Aligned_cols=87 Identities=18% Similarity=0.265 Sum_probs=68.4
Q ss_pred ccEEEEEEEEEEE---cCC---------CCCeEEEEEe-c----CceeEeeecCCCCCCcccceEEEEeeeCCCceeEEE
Q 015462 52 FAGIALLTLISAE---MKF---------KDKWLACVSL-G----EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARIS 114 (406)
Q Consensus 52 ~~g~l~v~v~~a~---~~~---------~~dP~v~vs~-g----~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fs 114 (406)
+...|.|+|++|. +.+ ..||||.|.. | ....+|+++.++.||+|||++.|.+....--.+.|.
T Consensus 468 ~~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 468 VKKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred ccceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEE
Confidence 4678999999994 111 1288999876 3 356799999999999999976665554434458999
Q ss_pred EeeccccCCCcccCcceeechhcc
Q 015462 115 VFETNRLSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 115 V~D~D~~s~~D~iG~~~l~L~~lL 138 (406)
|+|+|..+.+|++|...+++..+.
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr 571 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELR 571 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhc
Confidence 999999999999999999988875
No 146
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.21 E-value=1.2e-06 Score=54.31 Aligned_cols=28 Identities=29% Similarity=0.609 Sum_probs=16.8
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHh
Q 015462 216 KKEELFKAADKNGDGVVSVDELAALLAL 243 (406)
Q Consensus 216 ei~~~F~~~D~d~dG~Is~~E~~~~l~~ 243 (406)
+++++|+.+|+|+||+|+++||..+|+.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3556666666666666666666666543
No 147
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=1.1e-06 Score=83.76 Aligned_cols=124 Identities=23% Similarity=0.338 Sum_probs=80.0
Q ss_pred eeccccCCCcccCcceeechhc---ccCCCcch------hhhhhccCCCCCcch-----hhhhhcccCCCCChhhHHHHH
Q 015462 116 FETNRLSKSNLEGYCEVDLLEF---LTKDSDAD------SEVFDLLDPSSSNKI-----VGKISLSCSVEDPIETEKSFA 181 (406)
Q Consensus 116 ~D~D~~s~~D~iG~~~l~L~~l---Ls~~e~~~------~e~F~~~D~d~dG~I-----l~~~l~~l~~~~~~e~e~~~~ 181 (406)
+|..+|...|..|...+++.++ +-|++... .+...-+|+|+||+| ++.+....+...-++.-...-
T Consensus 164 rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Er 243 (325)
T KOG4223|consen 164 RDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTER 243 (325)
T ss_pred HHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccH
Confidence 4555566666666777776554 55555443 345566788888888 333333333111111112223
Q ss_pred HHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHH
Q 015462 182 RRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAA 239 (406)
Q Consensus 182 ~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~ 239 (406)
.+.+...|.|+||+++-+|+...+..-+......+++.++...|.|+||++|++|++.
T Consensus 244 e~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 244 EQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 4667778888888888888887776666666778888888888888888888888764
No 148
>PLN02964 phosphatidylserine decarboxylase
Probab=98.20 E-value=2.4e-06 Score=90.18 Aligned_cols=93 Identities=15% Similarity=0.200 Sum_probs=76.3
Q ss_pred HHHHHHHhchhcccCCCCceeHHHHHHHHHHhc-ccCcHHH---HHHHHHHhccCCCCCCCHHHHHHHHHhhcccCcccc
Q 015462 177 EKSFARRILSIVDYNQDGQLSFKEFSDLISAFG-NQVAANK---KEELFKAADKNGDGVVSVDELAALLALQQEKEPLMN 252 (406)
Q Consensus 177 e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg-~~~~~ee---i~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~~~~~~ 252 (406)
+...+.++|..+|.|++|.| +..++..+| ...++++ ++++|+.+|.|++|.|+++||..+|..++...++
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~se-- 214 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAA-- 214 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCH--
Confidence 33448899999999999997 777777788 4666665 8999999999999999999999999887654332
Q ss_pred CchhHHHhhhhccccCCeeeEeeecccC
Q 015462 253 CCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 253 ~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
..+.++++..|.+++ +.|.++++
T Consensus 215 --EEL~eaFk~fDkDgd---G~Is~dEL 237 (644)
T PLN02964 215 --NKKEELFKAADLNGD---GVVTIDEL 237 (644)
T ss_pred --HHHHHHHHHhCCCCC---CcCCHHHH
Confidence 357888999998888 77888887
No 149
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.14 E-value=9.8e-06 Score=84.61 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=69.6
Q ss_pred CCccEEEEEEEEEEE---c---------CCCCCeEEEEEec-----CceeEeeecCCCCCCcccceEEEEeeeCCCceeE
Q 015462 50 EDFAGIALLTLISAE---M---------KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVAR 112 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~---~---------~~~~dP~v~vs~g-----~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~ 112 (406)
.++...|.|+|+.|. + ....||||.|.+- ....||+++.++.||+|||++.|.+....--.++
T Consensus 448 ~~~~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllR 527 (581)
T PLN02222 448 LPVKTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLR 527 (581)
T ss_pred CCccceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEE
Confidence 345678999999994 1 1234889998762 3457999999999999999777665554445589
Q ss_pred EEEeeccccCCCcccCcceeechhcc
Q 015462 113 ISVFETNRLSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 113 fsV~D~D~~s~~D~iG~~~l~L~~lL 138 (406)
|.|+|.|..+.+|++|...+++..+.
T Consensus 528 f~V~d~D~~~~ddfigq~~lPv~~Lr 553 (581)
T PLN02222 528 LEVHEYDMSEKDDFGGQTCLPVWELS 553 (581)
T ss_pred EEEEECCCCCCCcEEEEEEcchhhhh
Confidence 99999999889999999999988764
No 150
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.13 E-value=8.9e-06 Score=85.09 Aligned_cols=88 Identities=22% Similarity=0.279 Sum_probs=69.0
Q ss_pred CccEEEEEEEEEEE---cCC---------CCCeEEEEEe-c----CceeEeeecCCCCCCcccceEEEEeeeCCCceeEE
Q 015462 51 DFAGIALLTLISAE---MKF---------KDKWLACVSL-G----EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARI 113 (406)
Q Consensus 51 ~~~g~l~v~v~~a~---~~~---------~~dP~v~vs~-g----~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~f 113 (406)
.+..+|.|+|+.|. +.+ ..||||.|.+ | ....+|++..++.||+|||+|.|.+....--.++|
T Consensus 466 ~~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf 545 (598)
T PLN02230 466 CPKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRV 545 (598)
T ss_pred CcCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEE
Confidence 34578999999995 111 2489999976 2 23468999999999999997776655544556899
Q ss_pred EEeeccccCCCcccCcceeechhcc
Q 015462 114 SVFETNRLSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 114 sV~D~D~~s~~D~iG~~~l~L~~lL 138 (406)
.|+|.|..+.+|++|...|++..+.
T Consensus 546 ~V~d~d~~~~ddfiGQ~~lPv~~Lr 570 (598)
T PLN02230 546 EVHEHDINEKDDFGGQTCLPVSEIR 570 (598)
T ss_pred EEEECCCCCCCCEEEEEEcchHHhh
Confidence 9999999899999999999988764
No 151
>PF14658 EF-hand_9: EF-hand domain
Probab=98.13 E-value=8e-06 Score=60.43 Aligned_cols=62 Identities=16% Similarity=0.315 Sum_probs=56.2
Q ss_pred HhchhcccCCCCceeHHHHHHHHHHhcc-cCcHHHHHHHHHHhccCCC-CCCCHHHHHHHHHhh
Q 015462 183 RILSIVDYNQDGQLSFKEFSDLISAFGN-QVAANKKEELFKAADKNGD-GVVSVDELAALLALQ 244 (406)
Q Consensus 183 ~~f~~~D~d~dG~I~~~Ef~~~l~~lg~-~~~~eei~~~F~~~D~d~d-G~Is~~E~~~~l~~~ 244 (406)
.+|++||.++.|.|...++..+|...+. ..++++++.+.+.+|.++. |.|+++.|..+|+.+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 4689999999999999999999999887 7788999999999999987 999999999999764
No 152
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.07 E-value=1.1e-05 Score=64.05 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=54.7
Q ss_pred HHHhchhcccC--CCCceeHHHHHHHHH-HhcccCc----HHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 181 ARRILSIVDYN--QDGQLSFKEFSDLIS-AFGNQVA----ANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 181 ~~~~f~~~D~d--~dG~I~~~Ef~~~l~-~lg~~~~----~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
+..+|..++.. .+|.|+.+||..++. .++...+ ++++..+|+.+|.|++|.|+++||..++...
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 56678888865 368999999999997 4666565 8999999999999999999999999998654
No 153
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=4.7e-06 Score=85.35 Aligned_cols=84 Identities=18% Similarity=0.332 Sum_probs=68.6
Q ss_pred ccEEEEEEEEEEE------cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeee-CCCceeEEEEeecccc---
Q 015462 52 FAGIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLET-NGPHVARISVFETNRL--- 121 (406)
Q Consensus 52 ~~g~l~v~v~~a~------~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~-~~~~~l~fsV~D~D~~--- 121 (406)
-...+.++|+.|. -.+++||||.+..|+.+-||+.|...|||+||| +|.||- +....+.+.|||.|.-
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~e--kfhfechnstdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNE--KFHFECHNSTDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhh--heeeeecCCCceeEEEEecCcccHHH
Confidence 4556788888884 468889999999999999999999999999999 888884 4467799999998841
Q ss_pred --------CCCcccCcceeechhc
Q 015462 122 --------SKSNLEGYCEVDLLEF 137 (406)
Q Consensus 122 --------s~~D~iG~~~l~L~~l 137 (406)
..+|++|...|.+..+
T Consensus 371 klrqkl~resddflgqtvievrtl 394 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTL 394 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEec
Confidence 2678888887776654
No 154
>PLN02228 Phosphoinositide phospholipase C
Probab=98.02 E-value=2e-05 Score=82.06 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=69.0
Q ss_pred CccEEEEEEEEEEEc-------C-----CCCCeEEEEEe-----cCceeEeeecCCCCCCcc-cceEEEEeeeCCCceeE
Q 015462 51 DFAGIALLTLISAEM-------K-----FKDKWLACVSL-----GEQTCRTAISDNTDKPIW-NSEKKLLLETNGPHVAR 112 (406)
Q Consensus 51 ~~~g~l~v~v~~a~~-------~-----~~~dP~v~vs~-----g~k~~kT~vi~~tLnP~w-ne~~~~~~e~~~~~~l~ 112 (406)
++...|.|+|++|.. . ...||||.|.+ ....+||+++.++.||+| ||++.|.+....--.++
T Consensus 428 p~~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lR 507 (567)
T PLN02228 428 PIKTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLW 507 (567)
T ss_pred CcCceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEE
Confidence 445689999999951 1 12588999875 234579999998899999 99777766554444589
Q ss_pred EEEeeccccCCCcccCcceeechhcc
Q 015462 113 ISVFETNRLSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 113 fsV~D~D~~s~~D~iG~~~l~L~~lL 138 (406)
|.|+|.|..+.++++|...+++..+.
T Consensus 508 f~V~D~d~~~~d~figq~~lPv~~Lr 533 (567)
T PLN02228 508 FKVQDYDNDTQNDFAGQTCLPLPELK 533 (567)
T ss_pred EEEEeCCCCCCCCEEEEEEcchhHhh
Confidence 99999998889999999999988763
No 155
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.00 E-value=4.7e-06 Score=66.13 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcc-CCCCCCCHHHHHHHHHh-hcccCccccCchhHHHhhhhccccCCeeeEeeecccC
Q 015462 215 NKKEELFKAADK-NGDGVVSVDELAALLAL-QQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 215 eei~~~F~~~D~-d~dG~Is~~E~~~~l~~-~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
..+..+|+.||+ +++|+|+.+||+.+|+. +|+..+. ++.+.++++..|.++| +.|+|++|
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~---~~~v~~mi~~~D~d~D---G~I~F~EF 69 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKD---VEGLEEKMKNLDVNQD---SKLSFEEF 69 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccC---HHHHHHHHHHhCCCCC---CCCcHHHH
Confidence 458899999999 99999999999999998 7765443 1478999999999999 89999998
No 156
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.98 E-value=7.8e-06 Score=50.68 Aligned_cols=28 Identities=21% Similarity=0.581 Sum_probs=25.8
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHh
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAF 208 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~l 208 (406)
++.+|+.+|.|+||.|+++||..++..+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 7889999999999999999999998753
No 157
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.95 E-value=4e-06 Score=86.90 Aligned_cols=84 Identities=11% Similarity=0.193 Sum_probs=64.3
Q ss_pred EEEEEEEEEE------cCCCCCeEEEEEecCc-------eeEeeecCCCCCCcccceEEEEeeeCC----CceeEEEEee
Q 015462 55 IALLTLISAE------MKFKDKWLACVSLGEQ-------TCRTAISDNTDKPIWNSEKKLLLETNG----PHVARISVFE 117 (406)
Q Consensus 55 ~l~v~v~~a~------~~~~~dP~v~vs~g~k-------~~kT~vi~~tLnP~wne~~~~~~e~~~----~~~l~fsV~D 117 (406)
.|-|+|+.|+ ..+-+||||+|-++-+ ..||+|+.+||||+|+|.|.|.+.-+. .-.+.|+|+|
T Consensus 948 ~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMD 1027 (1103)
T KOG1328|consen 948 TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMD 1027 (1103)
T ss_pred chhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeec
Confidence 3456677775 3566699999987532 358999999999999996655443322 2348999999
Q ss_pred ccccCCCcccCcceeechhcc
Q 015462 118 TNRLSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 118 ~D~~s~~D~iG~~~l~L~~lL 138 (406)
+|-++.||+-|++-+.+..+.
T Consensus 1028 HD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1028 HDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cceecccccchHHHHhhCCCC
Confidence 999999999999988888764
No 158
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=97.91 E-value=4.8e-05 Score=61.68 Aligned_cols=60 Identities=15% Similarity=0.284 Sum_probs=47.7
Q ss_pred EEEEEEEEE---------cCCCCCeEEEEEecCc-eeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccc
Q 015462 56 ALLTLISAE---------MKFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNR 120 (406)
Q Consensus 56 l~v~v~~a~---------~~~~~dP~v~vs~g~k-~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~ 120 (406)
|.|+|.+|+ +....+|||.|..+.. +.||+.. .||.|||+ |.|..+...++.+.|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~--F~i~Vdk~nEiel~VyDk~~ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNED--FEIPVEKNNEEEVIVYDKGG 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccce--EEEEecCCcEEEEEEEeCCC
Confidence 567888884 4667799999999876 8888875 69999995 55555568889999999854
No 159
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.88 E-value=3.6e-05 Score=65.29 Aligned_cols=97 Identities=14% Similarity=0.325 Sum_probs=73.2
Q ss_pred hhhhhccCCCCCcch-hhhhhccc---CCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHh-cccCcHHH----
Q 015462 146 SEVFDLLDPSSSNKI-VGKISLSC---SVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF-GNQVAANK---- 216 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I-l~~~l~~l---~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l-g~~~~~ee---- 216 (406)
+.+-..+..|+.|.+ +..++..+ .-..|.+.. +.-+|+.+|.|+|+.|.-.++...+..+ ...+++++
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK---~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i 150 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLK---AKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELI 150 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhh---hhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHH
Confidence 566777888999987 33333222 212344444 6779999999999999999999998885 34566666
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 015462 217 KEELFKAADKNGDGVVSVDELAALLALQQ 245 (406)
Q Consensus 217 i~~~F~~~D~d~dG~Is~~E~~~~l~~~~ 245 (406)
++++...+|.||||.|++.||..++...+
T Consensus 151 ~ekvieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 151 CEKVIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 55678889999999999999999886544
No 160
>PLN02270 phospholipase D alpha
Probab=97.87 E-value=4.5e-05 Score=81.76 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=66.7
Q ss_pred CCCeEEEEEecC-ceeEeeecCCC-CCCcccceEEEEeeeCCCceeEEEEeeccccCCCcccCcceeechhcccCCCcch
Q 015462 68 KDKWLACVSLGE-QTCRTAISDNT-DKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDAD 145 (406)
Q Consensus 68 ~~dP~v~vs~g~-k~~kT~vi~~t-LnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s~~D~iG~~~l~L~~lLs~~e~~~ 145 (406)
.+||||.|.+++ .+-||+++.+. .||.|||.|.+..-+ ....+.|+|-|.|-++. .+||.+.|+..++++.+++
T Consensus 46 ~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah-~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i-- 121 (808)
T PLN02270 46 ESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH-MASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEV-- 121 (808)
T ss_pred CCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc-CcceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCcc--
Confidence 459999999965 66799999874 699999955544433 34568999999998776 4999999999999887765
Q ss_pred hhhhhccCCCC
Q 015462 146 SEVFDLLDPSS 156 (406)
Q Consensus 146 ~e~F~~~D~d~ 156 (406)
..+|.++|.++
T Consensus 122 ~~~~~~~~~~~ 132 (808)
T PLN02270 122 DRWVEILDNDK 132 (808)
T ss_pred ccEEeccCCCC
Confidence 45678777763
No 161
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.85 E-value=3.3e-05 Score=81.30 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=69.7
Q ss_pred EEEEEEEEEE----------cCCCCCeEEEEEec-----CceeEee-ecCCCCCCcccceEEEEeeeCCCceeEEEEeec
Q 015462 55 IALLTLISAE----------MKFKDKWLACVSLG-----EQTCRTA-ISDNTDKPIWNSEKKLLLETNGPHVARISVFET 118 (406)
Q Consensus 55 ~l~v~v~~a~----------~~~~~dP~v~vs~g-----~k~~kT~-vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~ 118 (406)
+|.|+|++|. .+-..||+|.|-.. ....+|+ +..++-||.|+|+|.|.+....--.++|.|+|.
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 8999999995 35667999998652 2356899 556889999999888877776666789999999
Q ss_pred cccCCCcccCcceeechhcc
Q 015462 119 NRLSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 119 D~~s~~D~iG~~~l~L~~lL 138 (406)
|..++||++|...+++..+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~ 716 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELR 716 (746)
T ss_pred CCCCcccccceeeccHHHhh
Confidence 99999999999999988864
No 162
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.83 E-value=2.9e-05 Score=80.65 Aligned_cols=105 Identities=16% Similarity=0.245 Sum_probs=77.1
Q ss_pred cEEEEEEEEEEE------cCCCCCeEEEEEec-CceeEeeecCCCCCCcccceEEEEeeeCCC-ceeEEEEeeccccCCC
Q 015462 53 AGIALLTLISAE------MKFKDKWLACVSLG-EQTCRTAISDNTDKPIWNSEKKLLLETNGP-HVARISVFETNRLSKS 124 (406)
Q Consensus 53 ~g~l~v~v~~a~------~~~~~dP~v~vs~g-~k~~kT~vi~~tLnP~wne~~~~~~e~~~~-~~l~fsV~D~D~~s~~ 124 (406)
.-.|.|+|++|+ ..+..|||+.|.+. ...+||.++-++|.|-|-| .+.|+.... +-+.|.|||.| ++++
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gE--e~~~~iP~~F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGE--EFYFEIPRTFRYLSFYVWDRD-LKRD 80 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCcccc--ceEEecCcceeeEEEEEeccc-cccc
Confidence 346889999996 46777999999985 5789999999999999999 555665443 34899999999 9999
Q ss_pred cccCcceeechhcccCCCcchhhhhhccCCCC--Ccch
Q 015462 125 NLEGYCEVDLLEFLTKDSDADSEVFDLLDPSS--SNKI 160 (406)
Q Consensus 125 D~iG~~~l~L~~lLs~~e~~~~e~F~~~D~d~--dG~I 160 (406)
|.||.+.|.-.++-.....+.+--....|+|. .|.|
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v 118 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKV 118 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccccCCChhhceeE
Confidence 99999988877764333221133333355553 4544
No 163
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.76 E-value=3e-05 Score=61.45 Aligned_cols=59 Identities=15% Similarity=0.321 Sum_probs=48.2
Q ss_pred hhhhhccC-CCCCc-ch----hhhhhcc-----cCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHh
Q 015462 146 SEVFDLLD-PSSSN-KI----VGKISLS-----CSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (406)
Q Consensus 146 ~e~F~~~D-~d~dG-~I----l~~~l~~-----l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l 208 (406)
.++|..+| .+++| .| ++.++.. ++. .+++.+ +..+++.+|.|++|.|+|+||..++..+
T Consensus 11 ~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~-~~~~~~---v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 11 IDVFHQYSGREGDKHKLKKSELKELINNELSHFLEE-IKEQEV---VDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcC-CCCHHH---HHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 68999998 79999 58 6667766 554 455555 8999999999999999999999988653
No 164
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.70 E-value=3.4e-05 Score=48.53 Aligned_cols=26 Identities=46% Similarity=0.744 Sum_probs=16.2
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHHH
Q 015462 217 KEELFKAADKNGDGVVSVDELAALLA 242 (406)
Q Consensus 217 i~~~F~~~D~d~dG~Is~~E~~~~l~ 242 (406)
++.+|+.+|.|++|+|+.+||..+|+
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 45666666666666666666666665
No 165
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.70 E-value=0.00014 Score=62.50 Aligned_cols=66 Identities=14% Similarity=0.344 Sum_probs=62.4
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhccc
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQEK 247 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~ 247 (406)
+..+|+.||.++.|.|.-+.++.+|...|...++++++++|+.+-.|..|.|++.+|..+++ +|+.
T Consensus 103 I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it-hG~~ 168 (171)
T KOG0031|consen 103 ILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT-HGEK 168 (171)
T ss_pred HHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH-cccc
Confidence 78999999999999999999999999999999999999999999999999999999999997 5654
No 166
>PF14658 EF-hand_9: EF-hand domain
Probab=97.69 E-value=5.8e-05 Score=55.86 Aligned_cols=58 Identities=17% Similarity=0.372 Sum_probs=51.7
Q ss_pred hhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCC-CceeHHHHHHHHHH
Q 015462 147 EVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQD-GQLSFKEFSDLISA 207 (406)
Q Consensus 147 e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~d-G~I~~~Ef~~~l~~ 207 (406)
..|.++|+++.|.+ +..++++++...|.+.+ ++.+.+.+|+++. |.|+++.|..+|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~---Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESE---LQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHH---HHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 46999999999998 78888998876787777 9999999999998 99999999999864
No 167
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.67 E-value=0.00011 Score=65.68 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=72.6
Q ss_pred HHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh--cccCccccCchh
Q 015462 179 SFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ--QEKEPLMNCCPV 256 (406)
Q Consensus 179 ~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~--~e~~~~~~~cp~ 256 (406)
.....+|+.+|.+.||+|++.|+..+|..+|.+.+.--++.+++.+|.|.||.||+-||.-++... |+.... ..
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~d----s~ 174 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQED----SG 174 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccc----hH
Confidence 336789999999999999999999999999998888889999999999999999999998777653 332211 11
Q ss_pred HHHh--hhhccccCCeeeEeeeccc
Q 015462 257 CGET--LEVADMVNTMIHLTLCFDE 279 (406)
Q Consensus 257 ~~~~--l~~~D~~~diih~~ic~de 279 (406)
.... +.++|.....+.||-.|.+
T Consensus 175 ~~~LAr~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 175 LLRLARLSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred HHHHHHhcccchhhhhhhhHHHHHH
Confidence 2222 4445554444455555544
No 168
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.62 E-value=3.2e-05 Score=62.23 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=49.5
Q ss_pred cCCCcch-hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHh
Q 015462 139 TKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (406)
Q Consensus 139 s~~e~~~-~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l 208 (406)
+.++... .+.|..+|.+++|.| +..++...+ ..+.+ +..++..+|.+++|.|+++||+.++..+
T Consensus 5 s~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~---~~~~e---v~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 5 SPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG---LPQTL---LAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC---CCHHH---HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 3444445 889999999999999 555555543 33344 8899999999999999999999988753
No 169
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.61 E-value=7.8e-05 Score=55.13 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=44.5
Q ss_pred hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHh
Q 015462 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l 208 (406)
+++|..+|++++|.| +..++..++. ++.+ +..+++.+|.+++|.|+++||..++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~---~~~~---~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL---PRSV---LAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC---CHHH---HHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 367999999999998 4444444442 2333 8899999999999999999999988653
No 170
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.55 E-value=0.00028 Score=74.44 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=60.1
Q ss_pred EEEEEEEEEE----cCCCC-CeEEEEEe-----cCceeE-eeecCCCCCCccc-ceEEEEeeeCCC--ceeEEEEeeccc
Q 015462 55 IALLTLISAE----MKFKD-KWLACVSL-----GEQTCR-TAISDNTDKPIWN-SEKKLLLETNGP--HVARISVFETNR 120 (406)
Q Consensus 55 ~l~v~v~~a~----~~~~~-dP~v~vs~-----g~k~~k-T~vi~~tLnP~wn-e~~~~~~e~~~~--~~l~fsV~D~D~ 120 (406)
.|.|+|++|+ .+... -|||.|-. ...+|+ |.|+.+.|||+|| | .+.|+.-.+ -.++|.|+|.|-
T Consensus 1066 ~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e--~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPE--KFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred EEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCc--ceEEEeeCCceEEEEEEEecccc
Confidence 5789999996 23222 49999865 234555 4556899999999 8 555554333 337999999999
Q ss_pred cCCCcccCcceeechhcc
Q 015462 121 LSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 121 ~s~~D~iG~~~l~L~~lL 138 (406)
|+.-.++|.+..++..+-
T Consensus 1144 fs~~~FiaqA~yPv~~ik 1161 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIK 1161 (1267)
T ss_pred cCCcceeeeeecchhhhh
Confidence 999889999988877663
No 171
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.52 E-value=8.1e-05 Score=59.62 Aligned_cols=60 Identities=20% Similarity=0.343 Sum_probs=46.1
Q ss_pred hhhhhccCC-CC-Ccch----hhhhhcc-----cCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhc
Q 015462 146 SEVFDLLDP-SS-SNKI----VGKISLS-----CSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG 209 (406)
Q Consensus 146 ~e~F~~~D~-d~-dG~I----l~~~l~~-----l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg 209 (406)
++.|..+|. ++ +|.| +..++.. ++. .+++.+ +..+++.+|.|++|.|+|+||..++..++
T Consensus 11 ~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~-~~s~~e---i~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 11 ILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKN-QKDPMA---VDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhc-cccHHH---HHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 789999997 87 6999 4444443 222 334444 89999999999999999999999887643
No 172
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.51 E-value=6.9e-05 Score=60.00 Aligned_cols=63 Identities=19% Similarity=0.138 Sum_probs=48.4
Q ss_pred HHHHHHHHHhc-cCCCC-CCCHHHHHHHHHh-hcccCccccCchhHHHhhhhccccCCeeeEeeecccC
Q 015462 215 NKKEELFKAAD-KNGDG-VVSVDELAALLAL-QQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 215 eei~~~F~~~D-~d~dG-~Is~~E~~~~l~~-~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
..+.++|..|| +|++| +|+.+||..+|.. .+........-..+.+++++.|.+++ +.|++++|
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~d---G~Idf~EF 75 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKD---NEVDFNEF 75 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCC---CCCCHHHH
Confidence 45788999999 78998 5999999999976 33322221111368899999999988 88999998
No 173
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.50 E-value=0.00018 Score=72.25 Aligned_cols=53 Identities=28% Similarity=0.454 Sum_probs=47.2
Q ss_pred HHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHh
Q 015462 178 KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 243 (406)
Q Consensus 178 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~ 243 (406)
...++.+|+.+|.|+||.|+.+||.. ++.+|..+|.|+||.|+++||.+++..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 34489999999999999999999952 478999999999999999999998864
No 174
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.49 E-value=8.7e-05 Score=44.29 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=14.1
Q ss_pred HHHHHHhccCCCCCCCHHHHHHH
Q 015462 218 EELFKAADKNGDGVVSVDELAAL 240 (406)
Q Consensus 218 ~~~F~~~D~d~dG~Is~~E~~~~ 240 (406)
+++|+.+|.|+||.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45566666666666666666554
No 175
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.46 E-value=0.00026 Score=59.82 Aligned_cols=60 Identities=15% Similarity=0.376 Sum_probs=54.5
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHH
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALL 241 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l 241 (406)
.-+-++.||++++|.|...|++.+|..+|..+++++++.+.+-.- |.+|.|.|++|++.+
T Consensus 90 fvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 90 FVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHH
Confidence 456789999999999999999999999999999999999998764 778999999999765
No 176
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.45 E-value=0.0001 Score=58.79 Aligned_cols=64 Identities=20% Similarity=0.155 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhc-cCCCC-CCCHHHHHHHHHh-hcccCccccCchhHHHhhhhccccCCeeeEeeecccC
Q 015462 214 ANKKEELFKAAD-KNGDG-VVSVDELAALLAL-QQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 214 ~eei~~~F~~~D-~d~dG-~Is~~E~~~~l~~-~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
.+++.++|..|| .|++| .|+.+||..+|.. .|.........+.+.++++..|.+++ +.|.+++|
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~---G~I~f~eF 74 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGD---GEVDFQEF 74 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCC---CcCcHHHH
Confidence 467999999997 99999 5999999999975 55432211122468889999998887 88999888
No 177
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.43 E-value=0.0002 Score=50.90 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=36.8
Q ss_pred Ccch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHH
Q 015462 157 SNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 207 (406)
Q Consensus 157 dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~ 207 (406)
+|.| +..++..++....++.+ +..+|..+|.|++|.|+|+||+.++..
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e---~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEE---VDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHH---HHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHH---HHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4666 45555555653266666 899999999999999999999998864
No 178
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.42 E-value=0.0004 Score=48.55 Aligned_cols=50 Identities=22% Similarity=0.403 Sum_probs=41.3
Q ss_pred ceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 195 QLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 195 ~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
.++|.|...+|..++-.++++.+..+|+..|++++|.+..+||..+.+.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999999999988653
No 179
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.36 E-value=0.00021 Score=56.60 Aligned_cols=59 Identities=15% Similarity=0.370 Sum_probs=45.9
Q ss_pred hhhhhccCC-CC-Ccch----hhhhhc---ccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHh
Q 015462 146 SEVFDLLDP-SS-SNKI----VGKISL---SCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (406)
Q Consensus 146 ~e~F~~~D~-d~-dG~I----l~~~l~---~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l 208 (406)
-.+|..+|. ++ +|+| +..++. .++. ..++.+ +..+++.+|.|++|.|+|+||..++..+
T Consensus 13 i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~-k~t~~e---v~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 13 VAIFHKYSGREGDKNTLSKKELKELIQKELTIGS-KLQDAE---IAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCC-CCCHHH---HHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 478999998 66 7888 555553 2343 445555 8999999999999999999999988764
No 180
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.35 E-value=0.00023 Score=44.62 Aligned_cols=29 Identities=24% Similarity=0.598 Sum_probs=25.5
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHH-Hhc
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLIS-AFG 209 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~-~lg 209 (406)
++.+|+.+|.|++|.|+++||..+|. .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 78899999999999999999999998 554
No 181
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.34 E-value=0.00051 Score=68.11 Aligned_cols=63 Identities=24% Similarity=0.453 Sum_probs=56.7
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhc----ccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHh
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFG----NQVAANKKEELFKAADKNGDGVVSVDELAALLAL 243 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg----~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~ 243 (406)
++.+|+.+|.|++|.|+.+||.+++.-++ ...+++++.++-+..|.|+||.|++.||.+++.-
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 67899999999999999999999887654 4567899999999999999999999999999864
No 182
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.25 E-value=0.00025 Score=59.15 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=43.7
Q ss_pred hhhhhccCCCCCcchhhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKIVGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLI 205 (406)
Q Consensus 146 ~e~F~~~D~d~dG~Il~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l 205 (406)
.-.|..+|.|+||.|....+..+.. .+.+.. +..+|+.+|.|+||.||++||...+
T Consensus 51 ~w~F~~lD~d~DG~Ls~~EL~~~~l-~~~e~~---~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 51 GWMFNQLDGNYDGKLSHHELAPIRL-DPNEHC---IKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHc-cchHHH---HHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 6789999999999994444433322 333333 7889999999999999999999988
No 183
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.25 E-value=0.00034 Score=69.88 Aligned_cols=93 Identities=25% Similarity=0.340 Sum_probs=73.8
Q ss_pred hhccCCCCCcchhhhhhcccCCCCChhhHHHHHHHhchhc----ccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 015462 149 FDLLDPSSSNKIVGKISLSCSVEDPIETEKSFARRILSIV----DYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAA 224 (406)
Q Consensus 149 F~~~D~d~dG~Il~~~l~~l~~~~~~e~e~~~~~~~f~~~----D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~ 224 (406)
|-.+|+|+||.|-++.+...+....+ ..+++++|+++ =.-.+|.++|++|+.++.++-...+..-++-.|+.+
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~tlt---~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrcl 360 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDHTLT---ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCL 360 (493)
T ss_pred HhhhccccccccCHHHHHHHhccchh---hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeee
Confidence 55679999999977777666643443 45589999833 345579999999999998877777778899999999
Q ss_pred ccCCCCCCCHHHHHHHHHhh
Q 015462 225 DKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 225 D~d~dG~Is~~E~~~~l~~~ 244 (406)
|.+++|.|+.+|+.-+....
T Consensus 361 Dld~~G~Lt~~el~~fyeeq 380 (493)
T KOG2562|consen 361 DLDGDGILTLNELRYFYEEQ 380 (493)
T ss_pred eccCCCcccHHHHHHHHHHH
Confidence 99999999999987666543
No 184
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.23 E-value=0.00034 Score=75.41 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=73.7
Q ss_pred cCCccEEEEEEEEEEE------cCCCCCeEEEEEecCcee--EeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccc
Q 015462 49 EEDFAGIALLTLISAE------MKFKDKWLACVSLGEQTC--RTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNR 120 (406)
Q Consensus 49 ~~~~~g~l~v~v~~a~------~~~~~dP~v~vs~g~k~~--kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~ 120 (406)
..++.=.++|-|++|- ..++.|||+.|..|++.. ++..+.++|||++.+.+.+.........+.+.|||+|.
T Consensus 608 ~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~ 687 (1105)
T KOG1326|consen 608 EEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDL 687 (1105)
T ss_pred cCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeec
Confidence 3578888999999993 467889999999999885 67789999999999955444444446678999999999
Q ss_pred cCCCcccCcceeechhc
Q 015462 121 LSKSNLEGYCEVDLLEF 137 (406)
Q Consensus 121 ~s~~D~iG~~~l~L~~l 137 (406)
++.++.+|...+++..-
T Consensus 688 ~~~d~~iget~iDLEnR 704 (1105)
T KOG1326|consen 688 EAQDEKIGETTIDLENR 704 (1105)
T ss_pred ccccchhhceehhhhhc
Confidence 99999999999987653
No 185
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.22 E-value=0.0015 Score=51.71 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=50.8
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHH-h----cccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISA-F----GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~-l----g~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
+-.+|..|-- +.++++..||..++.. + ......+.++++|+..|.|+||.|++.||..++..+
T Consensus 10 lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 10 MMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4556777763 3469999999999976 3 334456889999999999999999999999998654
No 186
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.19 E-value=0.00037 Score=41.54 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=21.9
Q ss_pred HHHhchhcccCCCCceeHHHHHHHH
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLI 205 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l 205 (406)
++.+|+.+|.|+||.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3568999999999999999998864
No 187
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.15 E-value=0.00063 Score=48.32 Aligned_cols=56 Identities=29% Similarity=0.446 Sum_probs=42.8
Q ss_pred hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLI 205 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l 205 (406)
..+|..+|.+++|.+ +..++..++. ...... +..+|+.+|.+++|.|+++||..++
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~---~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGE-GLSEEE---IDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHH---HHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 357889999999988 4445555543 333334 7889999999999999999998765
No 188
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.07 E-value=0.00057 Score=53.80 Aligned_cols=63 Identities=14% Similarity=0.063 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcc--CCCCCCCHHHHHHHHHh-hcccCccccCchhHHHhhhhccccCCeeeEeeecccC
Q 015462 215 NKKEELFKAADK--NGDGVVSVDELAALLAL-QQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 215 eei~~~F~~~D~--d~dG~Is~~E~~~~l~~-~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
+++..+|..+|+ |++|.|+.+||..++.. .|.........+.+.+++...|.+++ +.|.+++|
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~---g~I~f~eF 73 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKD---GKVDFQEF 73 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCC---CcCcHHHH
Confidence 568889999999 89999999999999976 45433211223468888988888777 67888887
No 189
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.99 E-value=0.00087 Score=74.71 Aligned_cols=96 Identities=25% Similarity=0.379 Sum_probs=77.0
Q ss_pred hhhhhccCCCCCcch----hhhhhcccCCCCChhhH---HHHHHHhchhcccCCCCceeHHHHHHHHHHh--cccCcHHH
Q 015462 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETE---KSFARRILSIVDYNQDGQLSFKEFSDLISAF--GNQVAANK 216 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e---~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l--g~~~~~ee 216 (406)
.-+|+.||.+.+|.+ +..+++++|+.-|...+ .+.++.++..+|++.+|+|+..||+++|..- -.-.+.++
T Consensus 2256 s~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~e 2335 (2399)
T KOG0040|consen 2256 SMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEE 2335 (2399)
T ss_pred HHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHH
Confidence 668999999999998 77788888886543222 2348899999999999999999999998762 23346679
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHHH
Q 015462 217 KEELFKAADKNGDGVVSVDELAALLA 242 (406)
Q Consensus 217 i~~~F~~~D~d~dG~Is~~E~~~~l~ 242 (406)
|+.+|+.+|. +.-+|+.+++.+.|.
T Consensus 2336 IE~AfraL~a-~~~yvtke~~~~~lt 2360 (2399)
T KOG0040|consen 2336 IEDAFRALDA-GKPYVTKEELYQNLT 2360 (2399)
T ss_pred HHHHHHHhhc-CCccccHHHHHhcCC
Confidence 9999999998 788999999876663
No 190
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.99 E-value=0.0023 Score=52.28 Aligned_cols=63 Identities=22% Similarity=0.357 Sum_probs=52.9
Q ss_pred HHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHH
Q 015462 177 EKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLA 242 (406)
Q Consensus 177 e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~ 242 (406)
+......+|+..|. ++|.|+-++...++.. ..++.+.+..++...|.|++|+++.+||+-+|.
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~--S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMK--SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHH--TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHH--cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 34447889998885 6899999999998865 456889999999999999999999999998775
No 191
>PLN02352 phospholipase D epsilon
Probab=96.89 E-value=0.0032 Score=67.67 Aligned_cols=95 Identities=16% Similarity=0.253 Sum_probs=68.8
Q ss_pred ccEEEEEEEEEEE-----------cCCCCCeEEEEEecC-ceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeecc
Q 015462 52 FAGIALLTLISAE-----------MKFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETN 119 (406)
Q Consensus 52 ~~g~l~v~v~~a~-----------~~~~~dP~v~vs~g~-k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D 119 (406)
.-|.|.++|.+|. .+...+|||.|.+++ .+-|| .+.-||.|||.|.+..-+.....+.|+|-|.
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~- 83 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK- 83 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC-
Confidence 5689999999995 122339999999965 56688 5556999999665554443224688999882
Q ss_pred ccCCCcccCcceeechhcccCCC-cchhhhhhccCCCC
Q 015462 120 RLSKSNLEGYCEVDLLEFLTKDS-DADSEVFDLLDPSS 156 (406)
Q Consensus 120 ~~s~~D~iG~~~l~L~~lLs~~e-~~~~e~F~~~D~d~ 156 (406)
..++|.+.++..++++.++ + ..+|..++.++
T Consensus 84 ----~~~ig~~~~p~~~~~~g~~~~--~~~~~~~~~~~ 115 (758)
T PLN02352 84 ----CSILGRFHIQAHQIVTEASFI--NGFFPLIMENG 115 (758)
T ss_pred ----CeEEEEEEEEHHHhhCCCccc--ceEEEcccCCC
Confidence 5789999999999987654 3 45677776653
No 192
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=96.80 E-value=0.0021 Score=57.61 Aligned_cols=99 Identities=18% Similarity=0.262 Sum_probs=72.3
Q ss_pred cCCCcch-hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHh--ccc
Q 015462 139 TKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF--GNQ 211 (406)
Q Consensus 139 s~~e~~~-~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l--g~~ 211 (406)
+..+++. ..+|+.+|.+.||.| ++.++..++. +.+..- ++.++..+|.|.||.|+|.||.-++... |+-
T Consensus 94 srkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga-pQTHL~---lK~mikeVded~dgklSfreflLIfrkaaagEL 169 (244)
T KOG0041|consen 94 SRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGA-PQTHLG---LKNMIKEVDEDFDGKLSFREFLLIFRKAAAGEL 169 (244)
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCC-chhhHH---HHHHHHHhhcccccchhHHHHHHHHHHHhcccc
Confidence 4455556 789999999999999 6667777875 445555 8999999999999999999999887652 332
Q ss_pred CcHHHHHHHHH--HhccCCCCCCCHHHHHHHH
Q 015462 212 VAANKKEELFK--AADKNGDGVVSVDELAALL 241 (406)
Q Consensus 212 ~~~eei~~~F~--~~D~d~dG~Is~~E~~~~l 241 (406)
..+..+..+=+ .+|...-|..-...|-++=
T Consensus 170 ~~ds~~~~LAr~~eVDVskeGV~GAknFFeAK 201 (244)
T KOG0041|consen 170 QEDSGLLRLARLSEVDVSKEGVSGAKNFFEAK 201 (244)
T ss_pred ccchHHHHHHHhcccchhhhhhhhHHHHHHHH
Confidence 33344444433 3787777777777665543
No 193
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.76 E-value=0.0012 Score=60.79 Aligned_cols=129 Identities=19% Similarity=0.164 Sum_probs=77.4
Q ss_pred hhhhhccCCCCCcchhhhhhcccCCCCChhh---HHHHHHHhchhcccCCCCceeHHHHHHHHHHh-cc-----------
Q 015462 146 SEVFDLLDPSSSNKIVGKISLSCSVEDPIET---EKSFARRILSIVDYNQDGQLSFKEFSDLISAF-GN----------- 210 (406)
Q Consensus 146 ~e~F~~~D~d~dG~Il~~~l~~l~~~~~~e~---e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l-g~----------- 210 (406)
..+|...|.+.||+|....+.+...+...+. ....-+..|+.+|+|+||.|+|+||.--+... |.
T Consensus 104 mviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevadairl 183 (362)
T KOG4251|consen 104 MVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRL 183 (362)
T ss_pred HHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhc
Confidence 6789999999999993322222111111111 11224567999999999999999997654432 21
Q ss_pred --cCcHHHHHHHHHHhccCCCCCC---------CHHHHHHHHHhhcccCccccCchhHHHhhhhccccCCeeeEeeeccc
Q 015462 211 --QVAANKKEELFKAADKNGDGVV---------SVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDE 279 (406)
Q Consensus 211 --~~~~eei~~~F~~~D~d~dG~I---------s~~E~~~~l~~~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~de 279 (406)
.+.-++-.+.|..-+++..+.. +-+||..+| +++....... -.+.+++...|+++| -.++.++
T Consensus 184 neelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFL--HPEhSrgmLr-fmVkeivrdlDqdgD---kqlSvpe 257 (362)
T KOG4251|consen 184 NEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFL--HPEHSRGMLR-FMVKEIVRDLDQDGD---KQLSVPE 257 (362)
T ss_pred cCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHc--ChHhhhhhHH-HHHHHHHHHhccCCC---eeecchh
Confidence 1111223344555556655544 448888888 4544322111 146778888999998 5567777
Q ss_pred C
Q 015462 280 G 280 (406)
Q Consensus 280 f 280 (406)
|
T Consensus 258 F 258 (362)
T KOG4251|consen 258 F 258 (362)
T ss_pred h
Confidence 7
No 194
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.73 E-value=0.0014 Score=51.91 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=47.1
Q ss_pred HHHHHHHHH-hccCCCC-CCCHHHHHHHHHhhccc-CccccCchhHHHhhhhccccCCeeeEeeecccC
Q 015462 215 NKKEELFKA-ADKNGDG-VVSVDELAALLALQQEK-EPLMNCCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 215 eei~~~F~~-~D~d~dG-~Is~~E~~~~l~~~~e~-~~~~~~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
..+..+|.. +|+||+| +|+.+||..++...... ......-..+.++++..|.++| +.|+|++|
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~D---G~I~f~EF 74 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSD---GQLDFQEF 74 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCC---CcCcHHHH
Confidence 457889998 7888976 99999999999775211 0000011368889999999998 88999998
No 195
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.46 E-value=0.0023 Score=50.54 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=42.5
Q ss_pred hhhhhccCCC--CCcch----hhhhhcc-cCCCCCh-hhHHHHHHHhchhcccCCCCceeHHHHHHHHHHh
Q 015462 146 SEVFDLLDPS--SSNKI----VGKISLS-CSVEDPI-ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (406)
Q Consensus 146 ~e~F~~~D~d--~dG~I----l~~~l~~-l~~~~~~-e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l 208 (406)
-.+|..++.. .+|.| +..++.. ++. .++ ......+..+|+.+|.|++|.|+|+||..++..+
T Consensus 11 ~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~-~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 11 INVFHQYSVRKGHPDTLYKKEFKQLVEKELPN-FLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHhhH-hhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4678888865 36777 4555532 221 121 0012339999999999999999999999988764
No 196
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.41 E-value=0.0092 Score=59.45 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=72.0
Q ss_pred hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhc-hhcccCCCCceeHHHHHHHHHHhc------ccC--
Q 015462 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRIL-SIVDYNQDGQLSFKEFSDLISAFG------NQV-- 212 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f-~~~D~d~dG~I~~~Ef~~~l~~lg------~~~-- 212 (406)
...|+.+|+..+|++ -..++..... .... |+.+- +....+.||.+.|.+-...+..-+ ..+
T Consensus 467 ~~eF~~~D~~ksG~lsis~Wa~~mE~i~~---L~LP---Wr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 467 EDEFRKYDPKKSGKLSISHWAKCMENITG---LNLP---WRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred HHHHHhcChhhcCeeeHHHHHHHHHHHhc---CCCc---HHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 345666777777766 2223333211 1112 33322 222344556666666555443211 000
Q ss_pred ----cHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcccCccccCchhHHHhhhhccccCCeeeEeeecccC
Q 015462 213 ----AANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 213 ----~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
....++.+|...|.|++|.|+.+||+.+.+-.+......-.-..+.++.+.+|-++| |.|+..||
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkD---G~IDlNEf 609 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKD---GKIDLNEF 609 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCC---CcccHHHH
Confidence 113478899999999999999999999887665433211111235566667788888 88888776
No 197
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.38 E-value=0.0013 Score=54.62 Aligned_cols=59 Identities=25% Similarity=0.374 Sum_probs=42.9
Q ss_pred HHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHH
Q 015462 179 SFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAA 239 (406)
Q Consensus 179 ~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~ 239 (406)
..+.-.|..+|.|+||.|+..|+..+...+ ...+.-++.+|...|.|+||.||..|+..
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 346778999999999999999998876544 23445588999999999999999999865
No 198
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=96.22 E-value=0.035 Score=58.48 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=68.8
Q ss_pred cccccCCccEEEEEEEEEEE--------------------cCCCCCeEEEEEecCc----eeEeeecCCCCCCcccceEE
Q 015462 45 RVLNEEDFAGIALLTLISAE--------------------MKFKDKWLACVSLGEQ----TCRTAISDNTDKPIWNSEKK 100 (406)
Q Consensus 45 ~~~~~~~~~g~l~v~v~~a~--------------------~~~~~dP~v~vs~g~k----~~kT~vi~~tLnP~wne~~~ 100 (406)
+.-+...|+|.+.+++.--+ .+..+|||+.|+.... ..+|++++++.||.|+|.+.
T Consensus 107 ~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~ 186 (800)
T KOG2059|consen 107 PVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFY 186 (800)
T ss_pred ccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhhee
Confidence 33355678888877764321 4566899999988543 35999999999999999666
Q ss_pred EEeeeC---------------CCceeEEEEee-ccccCCCcccCcceeechhcc
Q 015462 101 LLLETN---------------GPHVARISVFE-TNRLSKSNLEGYCEVDLLEFL 138 (406)
Q Consensus 101 ~~~e~~---------------~~~~l~fsV~D-~D~~s~~D~iG~~~l~L~~lL 138 (406)
|.+... ....+.+.+|+ ++....+++.|.+.+++....
T Consensus 187 f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~ 240 (800)
T KOG2059|consen 187 FEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLR 240 (800)
T ss_pred eeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhh
Confidence 644322 13347888898 677777999999999988765
No 199
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.005 Score=61.32 Aligned_cols=95 Identities=19% Similarity=0.348 Sum_probs=60.7
Q ss_pred hhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHh---------------
Q 015462 148 VFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF--------------- 208 (406)
Q Consensus 148 ~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l--------------- 208 (406)
-|..+|+...|.| +.+.+..... ...+.....+++.-+.++.+ +-.|+++||.++..-+
T Consensus 323 EF~~~~~~~~g~Ise~DFA~~lL~~a~-~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~ 400 (489)
T KOG2643|consen 323 EFERFDKGDSGAISEVDFAELLLAYAG-VNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALRFYHM 400 (489)
T ss_pred HHHHhCcccccccCHHHHHHHHHHHcc-cchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3555666666766 3344433322 12233344577777778766 4569999987754322
Q ss_pred -ccc-----------------CcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 209 -GNQ-----------------VAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 209 -g~~-----------------~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
|.. +++.-++-+|..||.|+||.|+.+||..+|++.
T Consensus 401 Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 401 AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 112 222334557899999999999999999999875
No 200
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.06 E-value=0.007 Score=35.60 Aligned_cols=26 Identities=38% Similarity=0.678 Sum_probs=15.8
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHHH
Q 015462 217 KEELFKAADKNGDGVVSVDELAALLA 242 (406)
Q Consensus 217 i~~~F~~~D~d~dG~Is~~E~~~~l~ 242 (406)
++.+|+.+|.+++|.|+++||..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45566666666666666666666554
No 201
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.99 E-value=0.0093 Score=57.29 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=73.4
Q ss_pred hhhhhccCCCCCcch-hhhhhcccCCC-CChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHH-hcccCcHHHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKI-VGKISLSCSVE-DPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQVAANKKEELFK 222 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I-l~~~l~~l~~~-~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~-lg~~~~~eei~~~F~ 222 (406)
..+|.+||.+++|.+ +.+....+..- .|... ...++-+|+.|+.+.||.+.-.+|..++.. +| ..+-.+--+|.
T Consensus 262 ~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t-~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~lf~ 338 (412)
T KOG4666|consen 262 APTFMLFDEGTTGNGDYRETVKTLAVLCGPPVT-PVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPVLFP 338 (412)
T ss_pred hhhhheecCCCCCcccHHHHhhhheeeeCCCCc-HHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccccch
Confidence 677888888887777 44433332211 11111 122677888888888888888777777665 33 23334566788
Q ss_pred HhccCCCCCCCHHHHHHHHHhhcccCccccCchhHHHhhhhccccCCeeeEeeecccC
Q 015462 223 AADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEG 280 (406)
Q Consensus 223 ~~D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~~l~~~D~~~diih~~ic~def 280 (406)
..+...+|+|++++|..++...++.. .+.... -+.++.|+..|....
T Consensus 339 ~i~q~d~~ki~~~~f~~fa~~~p~~a----------~~~~~y-ld~~~~H~~s~~~~s 385 (412)
T KOG4666|consen 339 SIEQKDDPKIYASNFRKFAATEPNLA----------LSELGY-LDKRIYHATSNGNLS 385 (412)
T ss_pred hhhcccCcceeHHHHHHHHHhCchhh----------hhhhcc-ccchheeeeeccccc
Confidence 88888888888888888876654321 110011 234566777776553
No 202
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.76 E-value=0.026 Score=63.65 Aligned_cols=69 Identities=20% Similarity=0.374 Sum_probs=59.4
Q ss_pred hHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCc-------HHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 176 TEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVA-------ANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 176 ~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~-------~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
........+|+.||.+.+|.+++++|...|..+|-.++ +.+++++...+|++.+|+|+..|++.+|-..
T Consensus 2250 e~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2250 EQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 33344778999999999999999999999999886553 3479999999999999999999999999654
No 203
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=95.74 E-value=0.009 Score=62.80 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=47.6
Q ss_pred EeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccccC------------------------------------CCcc
Q 015462 83 RTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLS------------------------------------KSNL 126 (406)
Q Consensus 83 kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~~s------------------------------------~~D~ 126 (406)
-|.|.++||||.|+|.|.|.+++-......+.+||+|.-. -+|+
T Consensus 180 atsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDF 259 (1103)
T KOG1328|consen 180 ATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDF 259 (1103)
T ss_pred hcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccccc
Confidence 3788899999999996666666655677888899987311 2677
Q ss_pred cCcceeechhcccCCCcchhhhhhcc
Q 015462 127 EGYCEVDLLEFLTKDSDADSEVFDLL 152 (406)
Q Consensus 127 iG~~~l~L~~lLs~~e~~~~e~F~~~ 152 (406)
+|.+.|++.++.... . ..+|++-
T Consensus 260 LGciNipl~EiP~~G-l--d~WFkLe 282 (1103)
T KOG1328|consen 260 LGCINIPLAEIPPDG-L--DQWFKLE 282 (1103)
T ss_pred ccccccchhcCCcch-H--HHHhccC
Confidence 888888888764322 1 4667653
No 204
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=95.65 E-value=0.0062 Score=60.69 Aligned_cols=53 Identities=19% Similarity=0.367 Sum_probs=44.5
Q ss_pred cccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHH
Q 015462 188 VDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLA 242 (406)
Q Consensus 188 ~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~ 242 (406)
++.+.+|.|+|.||+=++.-+.. ++...+-+|+.||.||||-|+.+||..+.+
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlLS~--p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~ 260 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLLSI--PERNFRIAFKMFDLDGNGEIDKEEFETVQQ 260 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHHcc--CcccceeeeeeeecCCCCcccHHHHHHHHH
Confidence 46677899999999988776543 566688899999999999999999987663
No 205
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.41 E-value=0.057 Score=54.70 Aligned_cols=62 Identities=31% Similarity=0.466 Sum_probs=49.7
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
++-+-...|.-+||.|+|+||+.+-..+.. ++.....+|..||+.++|.+|++++.+++...
T Consensus 76 v~Lla~iaD~tKDglisf~eF~afe~~lC~--pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 76 VRLLASIADQTKDGLISFQEFRAFESVLCA--PDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHHHHhhhhhcccccccHHHHHHHHhhccC--chHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 344445667888999999999887554443 56778889999999999999999999999765
No 206
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.24 E-value=0.023 Score=33.28 Aligned_cols=27 Identities=33% Similarity=0.724 Sum_probs=24.2
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHH
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISA 207 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~ 207 (406)
++.+|+.+|.+++|.|++.||..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 677899999999999999999998764
No 207
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=95.00 E-value=0.015 Score=64.23 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=71.7
Q ss_pred cccccCCccEEEEEEEEEEE------cCCCCCeEEEEEe---cCc--eeEeeecCCCCCCcccceEEEEee-----eCCC
Q 015462 45 RVLNEEDFAGIALLTLISAE------MKFKDKWLACVSL---GEQ--TCRTAISDNTDKPIWNSEKKLLLE-----TNGP 108 (406)
Q Consensus 45 ~~~~~~~~~g~l~v~v~~a~------~~~~~dP~v~vs~---g~k--~~kT~vi~~tLnP~wne~~~~~~e-----~~~~ 108 (406)
.-|+...-.|+|+|-|--|+ -|-..||||+..+ ..+ +-||+++++|.||.+|| .++.. ....
T Consensus 1515 V~LsIsY~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE--~LvY~g~p~~~l~q 1592 (1639)
T KOG0905|consen 1515 VKLSISYNNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNE--MLVYDGFPKEILQQ 1592 (1639)
T ss_pred EEEEEEEcCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhh--heeecCCchhhhhh
Confidence 44566667888888888886 3677799999876 222 35899999999999999 55544 2235
Q ss_pred ceeEEEEeeccccCCCcccCcceeechhc
Q 015462 109 HVARISVFETNRLSKSNLEGYCEVDLLEF 137 (406)
Q Consensus 109 ~~l~fsV~D~D~~s~~D~iG~~~l~L~~l 137 (406)
.+++.+||..+.+..+-++|.+.++|.++
T Consensus 1593 ReLQ~sVls~~~~~en~~lg~v~i~L~~~ 1621 (1639)
T KOG0905|consen 1593 RELQVSVLSNGGLLENVFLGGVNIPLLKV 1621 (1639)
T ss_pred heeeeeeecccceeeeeeeeeeecchhhc
Confidence 67999999999999999999999998775
No 208
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.066 Score=43.91 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=45.0
Q ss_pred HHhchhcccCCCCceeHHHHHHHHHHhcc----------cCcHHHHH----HHHHHhccCCCCCCCHHHHHHH
Q 015462 182 RRILSIVDYNQDGQLSFKEFSDLISAFGN----------QVAANKKE----ELFKAADKNGDGVVSVDELAAL 240 (406)
Q Consensus 182 ~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~----------~~~~eei~----~~F~~~D~d~dG~Is~~E~~~~ 240 (406)
-..|.+.|.|++|.|+=-|+..++..... -.++.++. .+.+.-|.|+||+|+|.||...
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 35799999999999999999999876422 12345544 4455668899999999999764
No 209
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.90 E-value=0.024 Score=54.56 Aligned_cols=102 Identities=11% Similarity=0.097 Sum_probs=73.0
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHh-cccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcccCccccCchhHHH
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAF-GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGE 259 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~l-g~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~ 259 (406)
+..+|..||.+++|.+||.|....+.-+ +...+.+.++-+|+.|+.+.||.+...+|--+++.. ..+..+ .+-.
T Consensus 261 l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l----~v~~ 335 (412)
T KOG4666|consen 261 LAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV-LGVEVL----RVPV 335 (412)
T ss_pred hhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh-cCccee----eccc
Confidence 7889999999999999999999888774 667788999999999999999999998888777542 222221 1222
Q ss_pred hhhhccccCCeeeEeeecccCcccccccCCC
Q 015462 260 TLEVADMVNTMIHLTLCFDEGTGNQVMTGGF 290 (406)
Q Consensus 260 ~l~~~D~~~diih~~ic~def~~~~~~~~~f 290 (406)
.+..+++.++ +.|.+.+|+....+-|.|
T Consensus 336 lf~~i~q~d~---~ki~~~~f~~fa~~~p~~ 363 (412)
T KOG4666|consen 336 LFPSIEQKDD---PKIYASNFRKFAATEPNL 363 (412)
T ss_pred cchhhhcccC---cceeHHHHHHHHHhCchh
Confidence 3445555555 567777763333333333
No 210
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=94.84 E-value=0.026 Score=46.04 Aligned_cols=62 Identities=23% Similarity=0.468 Sum_probs=43.3
Q ss_pred cCCCcch-hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHH
Q 015462 139 TKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 207 (406)
Q Consensus 139 s~~e~~~-~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~ 207 (406)
++.+... ..+|+.+|+ .+|.| ...++..-+. .... +..++...|.|++|.++++||.-+|.-
T Consensus 5 s~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L---~~~~---L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 5 SPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGL---PRDV---LAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTS---SHHH---HHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCC---CHHH---HHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 3444444 789999986 57888 3344444332 2233 788999999999999999999988754
No 211
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=0.063 Score=51.93 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=59.3
Q ss_pred CCccEEEEEEEEEEE------cCCCCCeEEEEEe----c-CceeEeeecCCCCCCcccceEEEEeeeCC----CceeEEE
Q 015462 50 EDFAGIALLTLISAE------MKFKDKWLACVSL----G-EQTCRTAISDNTDKPIWNSEKKLLLETNG----PHVARIS 114 (406)
Q Consensus 50 ~~~~g~l~v~v~~a~------~~~~~dP~v~vs~----g-~k~~kT~vi~~tLnP~wne~~~~~~e~~~----~~~l~fs 114 (406)
..-...+.|+++.|. -.+.+||||.+-+ + +-+.||.+.++++||++|+ .+.++... ...+.++
T Consensus 229 ~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~--~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 229 SSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDE--EFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred CcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccc--cccccCCccchhcceEEEe
Confidence 445666778888863 3566699999865 2 2345788999999999999 55555322 4558899
Q ss_pred EeeccccCCCcccCccee
Q 015462 115 VFETNRLSKSNLEGYCEV 132 (406)
Q Consensus 115 V~D~D~~s~~D~iG~~~l 132 (406)
|+|.+....+|.+|-+.+
T Consensus 307 vgd~~~G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSML 324 (362)
T ss_pred ecccCCCcCccCCCcccc
Confidence 999998878888886644
No 212
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=94.59 E-value=0.026 Score=61.47 Aligned_cols=66 Identities=17% Similarity=0.320 Sum_probs=54.5
Q ss_pred CCCCCeEEEEEecCceeEeeecCCCCCCcccceEEEEeee-----------CCCceeEEEEeeccccCCCcccCcceee
Q 015462 66 KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLET-----------NGPHVARISVFETNRLSKSNLEGYCEVD 133 (406)
Q Consensus 66 ~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~-----------~~~~~l~fsV~D~D~~s~~D~iG~~~l~ 133 (406)
..-+||++.|.+-.+..+|-++..||||.|++ .++|.. .....+.|++||.|+...+|++|.+...
T Consensus 224 ~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq--~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~ 300 (1105)
T KOG1326|consen 224 DDESDPDAAVEFCGQSKETEVVPGTLNPTWDQ--TIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQR 300 (1105)
T ss_pred ccCCCchhhhhcccccceeEeecCcCCCCccc--eeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccc
Confidence 44559999999999999999999999999999 555442 1244578999999999999999988554
No 213
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.58 E-value=0.049 Score=43.23 Aligned_cols=29 Identities=28% Similarity=0.537 Sum_probs=26.6
Q ss_pred HHHHhchhcccCCCCceeHHHHHHHHHHh
Q 015462 180 FARRILSIVDYNQDGQLSFKEFSDLISAF 208 (406)
Q Consensus 180 ~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l 208 (406)
.+..+|+..|.|+||.|+|+||..++..+
T Consensus 49 ~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 49 AVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 38999999999999999999999998765
No 214
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=94.20 E-value=0.045 Score=55.22 Aligned_cols=48 Identities=23% Similarity=0.370 Sum_probs=39.9
Q ss_pred hhhhhccCCCCCcch-hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 207 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I-l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~ 207 (406)
..+|..+|.+++|.| ..+++ . ...+|+.+|.|+||.|+++||..++..
T Consensus 337 ~~aF~~~D~dgdG~Is~~E~~-----------~---~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 337 QEIFRLYDLDGDGFITREEWL-----------G---SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHhCCCCCCcCcHHHHH-----------H---HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 679999999999998 33331 1 467899999999999999999998865
No 215
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=94.11 E-value=0.16 Score=51.90 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=49.6
Q ss_pred hhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhccc---CcHHHHHHHHHHhccCCCCCCCHHHHHHHHH
Q 015462 175 ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQ---VAANKKEELFKAADKNGDGVVSVDELAALLA 242 (406)
Q Consensus 175 e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~---~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~ 242 (406)
..+...+...|...| |++|+|+..|+..++...+.. ...++++++....+.|.+|.|+++||..++-
T Consensus 15 q~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 334344677777888 888888888888888775433 3467888888888888888888888887554
No 216
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=0.013 Score=56.51 Aligned_cols=80 Identities=23% Similarity=0.218 Sum_probs=58.4
Q ss_pred EEEEEEEEE------cCCCCCeEEEEEec-----CceeEeeecCCCCCCcccceEEEEeee--C---CCceeEEEEeecc
Q 015462 56 ALLTLISAE------MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLET--N---GPHVARISVFETN 119 (406)
Q Consensus 56 l~v~v~~a~------~~~~~dP~v~vs~g-----~k~~kT~vi~~tLnP~wne~~~~~~e~--~---~~~~l~fsV~D~D 119 (406)
+..+|..|+ .....|||++..+. ...++|++.++++||+||| ..+.+. . ........|.|.+
T Consensus 95 ~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~e--tev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 95 LDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNE--TEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred cceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceec--cceecccccchhhhhhhheeeccCc
Confidence 445666664 24555999998652 2348999999999999999 444431 1 1345789999999
Q ss_pred ccCCCcccCcceeechhc
Q 015462 120 RLSKSNLEGYCEVDLLEF 137 (406)
Q Consensus 120 ~~s~~D~iG~~~l~L~~l 137 (406)
++..++.+|...+++..+
T Consensus 173 ~~~~~~sqGq~r~~lkKl 190 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKL 190 (362)
T ss_pred ccccccCcccchhhhhcc
Confidence 999999999988776664
No 217
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=93.72 E-value=0.15 Score=47.34 Aligned_cols=95 Identities=21% Similarity=0.292 Sum_probs=66.2
Q ss_pred hhhhhccCCCCCcch-hhhhhccc-C------CCCChhhH-HHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHH
Q 015462 146 SEVFDLLDPSSSNKI-VGKISLSC-S------VEDPIETE-KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANK 216 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I-l~~~l~~l-~------~~~~~e~e-~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~ee 216 (406)
.++...+|.|+|..+ ..+++... | .+...... ..-.++.=+.+|.|.||.++++|+..++..++......+
T Consensus 239 keivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne 318 (362)
T KOG4251|consen 239 KEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNE 318 (362)
T ss_pred HHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHH
Confidence 456667899888776 23322111 0 11111111 111344556779999999999999999887777777888
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHH
Q 015462 217 KEELFKAADKNGDGVVSVDELAAL 240 (406)
Q Consensus 217 i~~~F~~~D~d~dG~Is~~E~~~~ 240 (406)
+..+....|.|++..++.+|+.+.
T Consensus 319 ~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 319 VNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHHHHhhhccCCCcccCHHHHHHH
Confidence 999999999999999999998754
No 218
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=93.65 E-value=0.072 Score=41.87 Aligned_cols=79 Identities=6% Similarity=0.117 Sum_probs=53.9
Q ss_pred EEEEEEEE-----cCCCCCe--EEE--EEecC-ceeEeeecCCCCCCcccceEEEEee--eCCCceeEEEEeeccccCCC
Q 015462 57 LLTLISAE-----MKFKDKW--LAC--VSLGE-QTCRTAISDNTDKPIWNSEKKLLLE--TNGPHVARISVFETNRLSKS 124 (406)
Q Consensus 57 ~v~v~~a~-----~~~~~dP--~v~--vs~g~-k~~kT~vi~~tLnP~wne~~~~~~e--~~~~~~l~fsV~D~D~~s~~ 124 (406)
-++|++|+ ...-..| |++ +++.+ ..+||++.+...||+++|+|.|.+. .-....+.|+|+. +..+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 36788885 1222234 332 55655 4589999999999999995544222 2224558899998 45688
Q ss_pred cccCcceeechhc
Q 015462 125 NLEGYCEVDLLEF 137 (406)
Q Consensus 125 D~iG~~~l~L~~l 137 (406)
..+|.|++.+...
T Consensus 80 e~iG~~sL~l~s~ 92 (103)
T cd08684 80 RTIGECSLSLRTL 92 (103)
T ss_pred ceeeEEEeecccC
Confidence 8999999988874
No 219
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=0.28 Score=51.35 Aligned_cols=107 Identities=12% Similarity=0.046 Sum_probs=70.7
Q ss_pred EEEEEEEEEEE-----cCCCCCeEEEEEe-------cCceeEeeecCCCCCCcccceEEEEeeeC---CCceeEEEEeec
Q 015462 54 GIALLTLISAE-----MKFKDKWLACVSL-------GEQTCRTAISDNTDKPIWNSEKKLLLETN---GPHVARISVFET 118 (406)
Q Consensus 54 g~l~v~v~~a~-----~~~~~dP~v~vs~-------g~k~~kT~vi~~tLnP~wne~~~~~~e~~---~~~~l~fsV~D~ 118 (406)
-.+.|+|+.|+ ..+---|||.|.+ .+.+|-|+...++-.|.+||+|.|.+-.+ +.++++|.|-|.
T Consensus 1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred ceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence 35778888886 3333369998865 24567888888888899999888877643 367799999886
Q ss_pred cccCCCcccCcceeechhcccCCCcch-hhhhhccCCCCCcch
Q 015462 119 NRLSKSNLEGYCEVDLLEFLTKDSDAD-SEVFDLLDPSSSNKI 160 (406)
Q Consensus 119 D~~s~~D~iG~~~l~L~~lLs~~e~~~-~e~F~~~D~d~dG~I 160 (406)
=--..+-.+|-.-+.+.++..+..-.- ..+-..+-.|..|..
T Consensus 1205 CFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihmDeTGLt 1247 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHMDETGLT 1247 (1283)
T ss_pred eeecccceeeeeeeehhhHhhcCceeEeeeccccccccccchh
Confidence 433344457888888877765443322 233333444555654
No 220
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.23 E-value=0.13 Score=55.50 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=59.7
Q ss_pred ccccccccCC----ccEEEEEEEEEEEc--CCCCCeEEEEEe-------cCceeEeeecC-CCCCCcccceEEEEeeeC-
Q 015462 42 HHNRVLNEED----FAGIALLTLISAEM--KFKDKWLACVSL-------GEQTCRTAISD-NTDKPIWNSEKKLLLETN- 106 (406)
Q Consensus 42 ~~~~~~~~~~----~~g~l~v~v~~a~~--~~~~dP~v~vs~-------g~k~~kT~vi~-~tLnP~wne~~~~~~e~~- 106 (406)
..+.+++... +++.|.|+|++|.+ ..+.--||.|.+ -++.|||+++. +++||+|+|+ -|+|..-
T Consensus 687 r~fdPFse~~VdgvIA~t~sV~VISgqFLSdrkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~ee-pfvF~KVv 765 (1189)
T KOG1265|consen 687 RQFDPFSESPVDGVIAATLSVTVISGQFLSDRKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEE-PFVFRKVV 765 (1189)
T ss_pred cCcCCcccCcccceEEeeEEEEEEeeeeccccccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccC-Ccccceec
Confidence 3445556544 56678999999984 444557888865 24778999875 7799999983 2344421
Q ss_pred --CCceeEEEEeeccccCCCcccCcceeechhc
Q 015462 107 --GPHVARISVFETNRLSKSNLEGYCEVDLLEF 137 (406)
Q Consensus 107 --~~~~l~fsV~D~D~~s~~D~iG~~~l~L~~l 137 (406)
.--.++|.||+... .++|.--+++..+
T Consensus 766 LpeLA~lRiavyeEgg----K~ig~RIlpvd~l 794 (1189)
T KOG1265|consen 766 LPELASLRIAVYEEGG----KFIGQRILPVDGL 794 (1189)
T ss_pred ccchhheeeeeeccCC----ceeeeeccchhcc
Confidence 12347899998754 4555555554443
No 221
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=93.23 E-value=0.099 Score=43.33 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=34.0
Q ss_pred hhhhhccCCCCCcchhhhhhcccCC-CCChhhHHHHHHHhchhcccCCCCceeHHHHHH
Q 015462 146 SEVFDLLDPSSSNKIVGKISLSCSV-EDPIETEKSFARRILSIVDYNQDGQLSFKEFSD 203 (406)
Q Consensus 146 ~e~F~~~D~d~dG~Il~~~l~~l~~-~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~ 203 (406)
.-.|..+|.|+||.+-...+..+.. -.+.+.- ++..++..|.|+||.|+..|+..
T Consensus 57 ~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C---~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 57 HWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHC---ARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGG---HHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHH---HHHHHHHcCCCCCCCCCHHHHcc
Confidence 4469999999999984333333321 0233444 67788999999999999999864
No 222
>PLN02938 phosphatidylserine decarboxylase
Probab=92.90 E-value=0.021 Score=57.90 Aligned_cols=56 Identities=11% Similarity=-0.020 Sum_probs=47.0
Q ss_pred EEEEEeeeeccccCCccchHHHHHHHH-hhHHhhcccCCc---hhhhch-hhHHHhcccCCCCCCCC
Q 015462 345 VMSMRAIYQSKIGLGLMDIGTKELLKS-ISEKQGRKMNSV---ESSKEI-PKFVNFFKFRLVFPSLA 406 (406)
Q Consensus 345 ~~~~~~ly~~~~~~~~~~~~~~~~~~~-~s~~~g~~~~~~---~s~~~i-~~fi~~~~~~i~~~e~~ 406 (406)
+.|+.++|.+..+. ..++.|-++ +|+..|+..+.+ +++.-| +.|++.| +|||+|+.
T Consensus 75 ~~g~~~~~~~~~~~----~ll~lLP~r~iSrl~G~~a~~~~P~~lr~~i~~~fa~~f--~inl~E~~ 135 (428)
T PLN02938 75 EKGIEPEFSPDTKA----SFLRLLPLRSISRLWGSLTSVELPVWMRPYVYKAWARAF--HSNLEEAA 135 (428)
T ss_pred hcCcccccCCHHHH----HHHHHccHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh--CcCHHHhh
Confidence 55999999888765 566666555 999999999997 788888 9999999 99999973
No 223
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=92.65 E-value=0.2 Score=38.71 Aligned_cols=62 Identities=13% Similarity=0.304 Sum_probs=50.9
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHH-hcc-cCcHHHHHHHHHHhccC----CCCCCCHHHHHHHHHh
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISA-FGN-QVAANKKEELFKAADKN----GDGVVSVDELAALLAL 243 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~-lg~-~~~~eei~~~F~~~D~d----~dG~Is~~E~~~~l~~ 243 (406)
++.+|+.+-. +.+.|+.++|..+|.. .+. ..+.+++.+++..|..+ ..+.+|.++|..+|..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 6788888854 6789999999999987 444 46789999999998765 4799999999999954
No 224
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=92.64 E-value=0.15 Score=51.81 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=43.4
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhcc-----------------------------------cCcHHHHHHHHHHhc
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGN-----------------------------------QVAANKKEELFKAAD 225 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~-----------------------------------~~~~eei~~~F~~~D 225 (406)
...+|+.||..++|.++++++.+++..... ....|..+++|+..|
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d 189 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKD 189 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666665544211 112356788999999
Q ss_pred cCCCCCCCHHHHHHHHHhh
Q 015462 226 KNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 226 ~d~dG~Is~~E~~~~l~~~ 244 (406)
+.++|.||.-+|.++|...
T Consensus 190 ~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 190 KAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred ccCCCeeeeechHhhhhhh
Confidence 9999999988888877543
No 225
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=92.58 E-value=0.18 Score=35.41 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=28.8
Q ss_pred hhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHh
Q 015462 163 KISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (406)
Q Consensus 163 ~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~l 208 (406)
.++..+.. ...+ ..+..+|+.+|.+++|.++-+||..++..+
T Consensus 9 ~lLk~~NI-~~~~---~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 9 KLLKMMNI-EMDD---EYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHTT-----H---HHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHcc-CcCH---HHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 34455544 2333 338899999999999999999999987653
No 226
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=91.55 E-value=0.091 Score=52.14 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=33.1
Q ss_pred HHHHHHHH-hhHHhhcccCCchhhh----chhhHHHhcccCCCCCCC
Q 015462 364 GTKELLKS-ISEKQGRKMNSVESSK----EIPKFVNFFKFRLVFPSL 405 (406)
Q Consensus 364 ~~~~~~~~-~s~~~g~~~~~~~s~~----~i~~fi~~~~~~i~~~e~ 405 (406)
.++.|-++ +|+..||.++++.++. -|++||++| +|||+|+
T Consensus 56 ~l~llp~~~~Srl~G~~a~~~~p~~lr~~ii~~fik~y--~Inl~E~ 100 (353)
T PTZ00403 56 WARLLFGRTRSRITGSIFNIEIPNTYRLPIYNFLIKYM--GINKEEI 100 (353)
T ss_pred HHHHhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH--CCCHHHh
Confidence 44445455 9999999999987754 789999999 9999997
No 227
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=91.40 E-value=0.035 Score=57.75 Aligned_cols=162 Identities=12% Similarity=0.167 Sum_probs=108.8
Q ss_pred cCCCCCeEEEEEecCceeEeeecCCCCCCcccceEEE-EeeeCCCceeEEEEeeccccCCCcccCcceeechhcccCCCc
Q 015462 65 MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKL-LLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSD 143 (406)
Q Consensus 65 ~~~~~dP~v~vs~g~k~~kT~vi~~tLnP~wne~~~~-~~e~~~~~~l~fsV~D~D~~s~~D~iG~~~l~L~~lLs~~e~ 143 (406)
...++||+.++.+|...+.+.+-.+.++|..++.--+ ++..+....+.|++++.+.+...+.+..+.+++.+.+..-
T Consensus 407 T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k-- 484 (975)
T KOG2419|consen 407 TNYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEK-- 484 (975)
T ss_pred cccccCchhHhhhhhHHhhhhhhccccchhhhhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccc--
Confidence 5789999999999999999999999999988872222 3445567788999999998888888888888887766211
Q ss_pred chhhhhhccCCCCCcchhhhhhcccCCCCChhhHHHHHHHhc-hhcccCCCCceeHHHHHHHHHHh-------cccCcHH
Q 015462 144 ADSEVFDLLDPSSSNKIVGKISLSCSVEDPIETEKSFARRIL-SIVDYNQDGQLSFKEFSDLISAF-------GNQVAAN 215 (406)
Q Consensus 144 ~~~e~F~~~D~d~dG~Il~~~l~~l~~~~~~e~e~~~~~~~f-~~~D~d~dG~I~~~Ef~~~l~~l-------g~~~~~e 215 (406)
.++|..+|.+++...- +.... +...+ -.+=.+..|.++.+|...++... .+.++..
T Consensus 485 --~~~~~~lDl~g~~~~~-----------~~~~~---lYs~vS~~~~~~s~~~vtVDe~v~ll~~~i~~V~~~~er~tq~ 548 (975)
T KOG2419|consen 485 --EELFKALDLNGDPAHA-----------PKQPV---LYSYVSYPFLKKSFGVVTVDELVALLALDIIQVMLYLERLTQQ 548 (975)
T ss_pred --hhheehhhccCCcccC-----------ccccc---hhhhccccccccccCeeEHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4688888887775320 00000 11111 11112334889999998877631 1223334
Q ss_pred HHHHHHHHhccCC--CCCCCHHHHHHHHHhh
Q 015462 216 KKEELFKAADKNG--DGVVSVDELAALLALQ 244 (406)
Q Consensus 216 ei~~~F~~~D~d~--dG~Is~~E~~~~l~~~ 244 (406)
+-..+|.++.+.+ ...|+..|+.+-++.+
T Consensus 549 ~q~p~~n~~n~~~~~~Qs~~r~q~~E~~qs~ 579 (975)
T KOG2419|consen 549 EQEPIINHFNKSAWAGQSITRSQLVEGLQSW 579 (975)
T ss_pred cccchhhcccCCCCCccccchhhhhhhhhcc
Confidence 4456677776654 4578888888776654
No 228
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=89.83 E-value=1.3 Score=39.21 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 214 ANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 214 ~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
.+..+++|..+++.+.+.+|..|+.++++..
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 4779999999999888999999999998653
No 229
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=88.77 E-value=0.48 Score=49.12 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=54.3
Q ss_pred cCCCCCeEEEEEe----c--CceeEeeecCCCCCCcccceEEEEee----eCCCceeEEEEeeccccCCCcccCcceeec
Q 015462 65 MKFKDKWLACVSL----G--EQTCRTAISDNTDKPIWNSEKKLLLE----TNGPHVARISVFETNRLSKSNLEGYCEVDL 134 (406)
Q Consensus 65 ~~~~~dP~v~vs~----g--~k~~kT~vi~~tLnP~wne~~~~~~e----~~~~~~l~fsV~D~D~~s~~D~iG~~~l~L 134 (406)
+..++|||..+.. + ....+|.+++++|||.|.+.. +.+. .+....+++.+||.+.-.++|++|.+.-++
T Consensus 153 ~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~-i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~ 231 (529)
T KOG1327|consen 153 FFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFS-ISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTL 231 (529)
T ss_pred ccccCCcceEEEEecCCCceeeccccceeccCCCCcccccc-cchhhhcccCCCCceEEEEeccCCCCCcCceeEecccH
Confidence 5677799877654 2 245799999999999999822 2111 223566889999999999999999998777
Q ss_pred hhc
Q 015462 135 LEF 137 (406)
Q Consensus 135 ~~l 137 (406)
.++
T Consensus 232 ~~~ 234 (529)
T KOG1327|consen 232 SEL 234 (529)
T ss_pred HHh
Confidence 665
No 230
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=88.53 E-value=0.38 Score=49.36 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=51.6
Q ss_pred cccCCCcch-hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcc
Q 015462 137 FLTKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGN 210 (406)
Q Consensus 137 lLs~~e~~~-~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~ 210 (406)
.+++++..+ .+-|..+| +++|++ +..++...+... .-....+++.++...+.|.+|.|+|+||..++..+..
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 355566656 88999999 999998 555555444311 1112234899999999999999999999998766543
No 231
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=87.85 E-value=1.9 Score=37.73 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=61.5
Q ss_pred cEEEEEEEEEEE-----cC---CCCCe--EEEEEecCceeEeeecCCCCCCcccceEEEEeeeCC-------------Cc
Q 015462 53 AGIALLTLISAE-----MK---FKDKW--LACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNG-------------PH 109 (406)
Q Consensus 53 ~g~l~v~v~~a~-----~~---~~~dP--~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~-------------~~ 109 (406)
.=-|.|+|.+|+ .. +.... .+.+.+++|.|+|+-+.-+-+|.++|.|.|-++.+. ..
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 335788899886 11 22223 344678999999999999999999995555444321 23
Q ss_pred eeEEEEeeccccCCCcccCcceeechhcccCCC
Q 015462 110 VARISVFETNRLSKSNLEGYCEVDLLEFLTKDS 142 (406)
Q Consensus 110 ~l~fsV~D~D~~s~~D~iG~~~l~L~~lLs~~e 142 (406)
.+.+-|.-.|..+...++|...+++..++....
T Consensus 88 pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~ 120 (156)
T PF15627_consen 88 PIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN 120 (156)
T ss_pred ceEEEEEEecCCCceEeeeeceehHHHHhccCC
Confidence 356677767766566778888888877775544
No 232
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.84 E-value=0.84 Score=37.59 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=36.9
Q ss_pred hhhhhccCCCCCcch----hhhhhc------ccCCC-C--ChhhH-HHHHHHhchhcccCCCCceeHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKI----VGKISL------SCSVE-D--PIETE-KSFARRILSIVDYNQDGQLSFKEFSDL 204 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I----l~~~l~------~l~~~-~--~~e~e-~~~~~~~f~~~D~d~dG~I~~~Ef~~~ 204 (406)
...|+..|-|+++.+ +-.++. ..+.+ . +.+.+ ...+..+++.-|.|+||.|+|-||...
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 356888888888877 111111 11221 1 12222 344667778889999999999999764
No 233
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=86.70 E-value=0.75 Score=48.43 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=53.7
Q ss_pred HHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHH
Q 015462 177 EKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDEL 237 (406)
Q Consensus 177 e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~ 237 (406)
...++..+|+..|.+++|.|+|.+|+..|..+......+.+.-+|+.+|.+++ ..+.+|.
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 35668899999999999999999999999988777777889999999999999 8888887
No 234
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=86.49 E-value=0.79 Score=44.70 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=51.9
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
+--||..+|.|.||.++..|+..+-. .-.+.-++.+|...|...||.|+-+|+...+...
T Consensus 252 ~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 252 LGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 77799999999999999999988643 2345669999999999999999999999998654
No 235
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=85.16 E-value=0.81 Score=44.36 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=51.1
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhc-ccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhccc
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFG-NQVAANKKEELFKAADKNGDGVVSVDELAALLALQQEK 247 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg-~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~ 247 (406)
+.-.|..+|.|.++.|+..|...+=..+. ......-.+.+|+..|.|+|-.||++|++..|....+.
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~~ 402 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKER 402 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcccccc
Confidence 56679999999999998888655433322 12234557889999999999999999999999665543
No 236
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=84.86 E-value=2.4 Score=45.57 Aligned_cols=92 Identities=23% Similarity=0.285 Sum_probs=67.7
Q ss_pred hhhhhccCCCCCcch----hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELF 221 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F 221 (406)
..+|+..|++.+|.+ ...++..+.. .. ....++.+|+..|..+++.+..++|..+...+.... ++..+|
T Consensus 139 ~~~~~~ad~~~~~~~~~~~~~~~~~~~n~-~l---~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f 211 (746)
T KOG0169|consen 139 HSIFQEADKNKNGHMSFDEVLDLLKQLNV-QL---SESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLF 211 (746)
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHH-hh---hHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHH
Confidence 467888899999987 3334444432 22 233378888888888889999999999887765432 788888
Q ss_pred HHhccCCCCCCCHHHHHHHHHhhc
Q 015462 222 KAADKNGDGVVSVDELAALLALQQ 245 (406)
Q Consensus 222 ~~~D~d~dG~Is~~E~~~~l~~~~ 245 (406)
..+-.+ .+.++.++|..+|...+
T Consensus 212 ~~~s~~-~~~ls~~~L~~Fl~~~q 234 (746)
T KOG0169|consen 212 VQYSHG-KEYLSTDDLLRFLEEEQ 234 (746)
T ss_pred HHHhCC-CCccCHHHHHHHHHHhc
Confidence 887644 88999999999998764
No 237
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=83.67 E-value=2.1 Score=43.56 Aligned_cols=79 Identities=9% Similarity=0.197 Sum_probs=54.6
Q ss_pred hchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhcc----CCCCCCCHHHHHHHHHhhcccCccccCchhHHH
Q 015462 184 ILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADK----NGDGVVSVDELAALLALQQEKEPLMNCCPVCGE 259 (406)
Q Consensus 184 ~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~----d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~ 259 (406)
.|-.+|.|.||.|+-+++...-.. .++.--++.+|.+.-. -.+|.+++++|+.++-++-.+..+ |.+.-
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~----~SleY 355 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTP----ASLEY 355 (493)
T ss_pred HHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCc----cchhh
Confidence 377889999999999999876543 3456678999995443 358999999999998776443332 23344
Q ss_pred hhhhccccCC
Q 015462 260 TLEVADMVNT 269 (406)
Q Consensus 260 ~l~~~D~~~d 269 (406)
.++-.|-+++
T Consensus 356 wFrclDld~~ 365 (493)
T KOG2562|consen 356 WFRCLDLDGD 365 (493)
T ss_pred heeeeeccCC
Confidence 4444554444
No 238
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=81.28 E-value=0.89 Score=48.79 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=28.0
Q ss_pred hhHHhhcccCCch---hhhchhhHHHhcccCCCCCCC
Q 015462 372 ISEKQGRKMNSVE---SSKEIPKFVNFFKFRLVFPSL 405 (406)
Q Consensus 372 ~s~~~g~~~~~~~---s~~~i~~fi~~~~~~i~~~e~ 405 (406)
+|+..|+..+++. +..-|++||+.| +|||+|+
T Consensus 341 ~S~~~g~~a~~~~~~~~~~~i~~fi~~y--~i~l~E~ 375 (610)
T PRK09629 341 LSRLAGCVAECRVRWFKNAFTAWFARRY--QVDMSQA 375 (610)
T ss_pred HHHHHHHHHhCccHhhHHHHHHHHHHHh--CCCHHHh
Confidence 8999999977764 666699999999 9999996
No 239
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.81 E-value=4.4 Score=41.52 Aligned_cols=66 Identities=14% Similarity=0.315 Sum_probs=51.2
Q ss_pred hHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHh
Q 015462 176 TEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 243 (406)
Q Consensus 176 ~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~ 243 (406)
..+++...-|+.+..|-.|+|+=.--..++.. ..++-+|+..+++..|.|.||-+++.||+.++.-
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 34445666788888888898887666665543 4567788999999999999999999999988853
No 240
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.79 E-value=2.3 Score=45.78 Aligned_cols=60 Identities=22% Similarity=0.396 Sum_probs=51.1
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHH
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLA 242 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~ 242 (406)
.+.+|...|....|+++=..=+.+|.. ..++...+..++...|.|+||.++.+||+-.|.
T Consensus 197 Y~QlFNa~DktrsG~Lsg~qaR~aL~q--S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 197 YRQLFNALDKTRSGYLSGQQARSALGQ--SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHhhhcccccccccccHHHHHHHHh--cCCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 678999999999999998888777754 456788899999999999999999999986653
No 241
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=78.01 E-value=3.3 Score=43.11 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=45.8
Q ss_pred CceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccc----cCCCcccCcceeechhccc
Q 015462 79 EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNR----LSKSNLEGYCEVDLLEFLT 139 (406)
Q Consensus 79 ~k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~----~s~~D~iG~~~l~L~~lLs 139 (406)
.+..+|.+++..+||.|-+.+.+.+..+..+.++|.++|-+. ++..|++|.+...+..+.+
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhh
Confidence 455689999999999999955443334456678899988664 5678889988888777653
No 242
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=74.32 E-value=13 Score=32.76 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=47.7
Q ss_pred ccEEEEEEEEEEE---cCCCCCeEEEEEe--cCcee----EeeecCCCCCCcccceEEEEeeeC-C--CceeEEEEeecc
Q 015462 52 FAGIALLTLISAE---MKFKDKWLACVSL--GEQTC----RTAISDNTDKPIWNSEKKLLLETN-G--PHVARISVFETN 119 (406)
Q Consensus 52 ~~g~l~v~v~~a~---~~~~~dP~v~vs~--g~k~~----kT~vi~~tLnP~wne~~~~~~e~~-~--~~~l~fsV~D~D 119 (406)
+..-++|+|++|+ +.-.++-||.+.+ |.+.+ .|+.+.- -+|.|||...|.+... . .-.+.|++|+..
T Consensus 6 ~~~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 6 INSNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CCCCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 3446789999986 3333455666543 66555 3443432 5799999665544321 2 334789999865
Q ss_pred ccC--CC--cccCcceeechh
Q 015462 120 RLS--KS--NLEGYCEVDLLE 136 (406)
Q Consensus 120 ~~s--~~--D~iG~~~l~L~~ 136 (406)
.-. +. -.+|.+.+.+.+
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred cccCCCCceEEEEEEEEEEEC
Confidence 311 11 126666665544
No 243
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=73.20 E-value=7.3 Score=33.11 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=48.5
Q ss_pred CeEEEEE--e--cCceeEeeecCCCCCCcccceEEEEee----eCC-----------CceeEEEEeeccccCCCc-----
Q 015462 70 KWLACVS--L--GEQTCRTAISDNTDKPIWNSEKKLLLE----TNG-----------PHVARISVFETNRLSKSN----- 125 (406)
Q Consensus 70 dP~v~vs--~--g~k~~kT~vi~~tLnP~wne~~~~~~e----~~~-----------~~~l~fsV~D~D~~s~~D----- 125 (406)
.+||.+. | .++..+|+++-++-.|+|+.++.|... .+. .-++.|+||-.+.-+..|
T Consensus 34 N~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~ 113 (143)
T cd08683 34 NSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIE 113 (143)
T ss_pred ceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccC
Confidence 5888876 3 556789999999999999998877433 111 234788888765433332
Q ss_pred -----ccCcceeechhccc
Q 015462 126 -----LEGYCEVDLLEFLT 139 (406)
Q Consensus 126 -----~iG~~~l~L~~lLs 139 (406)
++|.+.+++.+++.
T Consensus 114 ~~~DilLG~v~IPl~~Ll~ 132 (143)
T cd08683 114 TSGDILLGTVKIPLRDLLT 132 (143)
T ss_pred cCCcEEEEEEEeeHHHHhh
Confidence 36888888887764
No 244
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=71.58 E-value=14 Score=38.90 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=27.5
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHhhccc
Q 015462 216 KKEELFKAADKNGDGVVSVDELAALLALQQEK 247 (406)
Q Consensus 216 ei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~ 247 (406)
-+..+|..||.|+||.++.+||..++...|..
T Consensus 316 Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~ 347 (625)
T KOG1707|consen 316 FLVDVFEKFDRDNDGALSPEELKDLFSTAPGS 347 (625)
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHhhhCCCC
Confidence 36788999999999999999999999776543
No 245
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=69.79 E-value=6.6 Score=37.94 Aligned_cols=62 Identities=23% Similarity=0.371 Sum_probs=45.4
Q ss_pred HHhchhcccCCCCceeHHHHHHHHHH-h----cccCcHHHH-----------HHHHHHhccCCCCCCCHHHHHHHHHh
Q 015462 182 RRILSIVDYNQDGQLSFKEFSDLISA-F----GNQVAANKK-----------EELFKAADKNGDGVVSVDELAALLAL 243 (406)
Q Consensus 182 ~~~f~~~D~d~dG~I~~~Ef~~~l~~-l----g~~~~~eei-----------~~~F~~~D~d~dG~Is~~E~~~~l~~ 243 (406)
+..|...|.|+||+++-.|+-+++.. + .....++++ +.+++.+|.|.|.-||.+||...-..
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 45788889999999999999988764 2 222222221 23577899999999999999876543
No 246
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.82 E-value=4 Score=44.04 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=41.8
Q ss_pred hhhhhccCCCCCcchhhhhh-cccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKIVGKIS-LSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLIS 206 (406)
Q Consensus 146 ~e~F~~~D~d~dG~Il~~~l-~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~ 206 (406)
.++|+.+|+...|.+.+.-- ..++........ +-.|+..-|.|+||.++.+||.-+|.
T Consensus 198 ~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~---LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 198 RQLFNALDKTRSGYLSGQQARSALGQSGLPQNQ---LAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHhhhcccccccccccHHHHHHHHhcCCchhh---HhhheeeeccCCCCcccHHHHHHHHH
Confidence 78999999999999832211 122222233333 67788899999999999999987654
No 247
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.43 E-value=5.4 Score=39.58 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=57.1
Q ss_pred ccEEEEEEEEEEE-------cCCCCCeEEEEEecCc-----eeEeeecCCCCCCcccceEEEEeeeCC-CceeEEEEee-
Q 015462 52 FAGIALLTLISAE-------MKFKDKWLACVSLGEQ-----TCRTAISDNTDKPIWNSEKKLLLETNG-PHVARISVFE- 117 (406)
Q Consensus 52 ~~g~l~v~v~~a~-------~~~~~dP~v~vs~g~k-----~~kT~vi~~tLnP~wne~~~~~~e~~~-~~~l~fsV~D- 117 (406)
-.|.+.|+|+.|+ -+--.+|||+|.+=.. +.+|+..++|+.|-+-+ .+.|+..- ...++..||-
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq--~l~f~~sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQ--QLSFDQSPPGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhh--hhhhccCCCccEEEEEEecc
Confidence 5689999999996 2335689999986222 35788889999998888 66666432 4567888874
Q ss_pred ccccCCCcccCcceeechhc
Q 015462 118 TNRLSKSNLEGYCEVDLLEF 137 (406)
Q Consensus 118 ~D~~s~~D~iG~~~l~L~~l 137 (406)
.-+.-...++|...+-+.++
T Consensus 345 ygRmd~k~fmg~aqi~l~eL 364 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDEL 364 (405)
T ss_pred ccccchHHHhhHHHHHhhhh
Confidence 22334444577666655554
No 248
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=66.11 E-value=11 Score=39.69 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=59.2
Q ss_pred HHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 015462 179 SFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQ 245 (406)
Q Consensus 179 ~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~ 245 (406)
.+.+..|..+|.|+.|.+...+.+.+|...+...+++.+.+..+..|.+-+|.+...||.+++....
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 3355778899999999999999999999988888999999999999998899999999999987653
No 249
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.04 E-value=6.6 Score=40.29 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=45.9
Q ss_pred ccCCCcch-hhhhhccCCCCCcchh----hhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHH
Q 015462 138 LTKDSDAD-SEVFDLLDPSSSNKIV----GKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 207 (406)
Q Consensus 138 Ls~~e~~~-~e~F~~~D~d~dG~Il----~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~ 207 (406)
+++++.+. ...|..+.+|-.|.|. ++++.+-. ..-.| +..|++..|.|.||-++..||++++.-
T Consensus 225 IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk---lpi~E---LshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 225 ITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK---LPIEE---LSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred cCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc---CchHH---HHHHHhhcccCccccccHHHHHhhHhh
Confidence 44444444 6778888888888883 33443332 22234 788999999999999999999998764
No 250
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=63.16 E-value=6.3 Score=38.43 Aligned_cols=56 Identities=27% Similarity=0.484 Sum_probs=41.4
Q ss_pred hhhhhccCCCCCcch-------hhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKI-------VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 207 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I-------l~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~ 207 (406)
.--|..+|.|+++.| ++.++.... .+ ..=.+.+++..|.|+|..|++.|++..|..
T Consensus 336 ~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~----rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 336 HWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KP----RKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeecccccCccchhhcchHHHHHHhhc--cH----HHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 346899999999887 444443332 12 222578999999999999999999998765
No 251
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=61.66 E-value=58 Score=25.76 Aligned_cols=62 Identities=11% Similarity=0.228 Sum_probs=39.8
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHh-------ccc----CcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAF-------GNQ----VAANKKEELFKAADKNGDGVVSVDELAALLALQQ 245 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~l-------g~~----~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~ 245 (406)
.+-+|+.+ .|.+|.++..-|..+|..+ |+. -.+..++..|... ...-.|+.++|.+.|...+
T Consensus 5 yRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 5 YRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--
T ss_pred HHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCC
Confidence 56788888 7778999999998887653 322 2456788889886 3456799999999997653
No 252
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=61.56 E-value=26 Score=31.90 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=27.9
Q ss_pred ceeEeeecCCCCCCcccceEEEEeeeCC--CceeEEEEee
Q 015462 80 QTCRTAISDNTDKPIWNSEKKLLLETNG--PHVARISVFE 117 (406)
Q Consensus 80 k~~kT~vi~~tLnP~wne~~~~~~e~~~--~~~l~fsV~D 117 (406)
..++|.|..|+-+|.|+|++++.+..+. ..=+.|+++-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH 92 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKH 92 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEe
Confidence 4689999999999999999988665332 3336666643
No 253
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=61.26 E-value=27 Score=30.45 Aligned_cols=56 Identities=13% Similarity=0.270 Sum_probs=41.2
Q ss_pred cCCCCceeHHHHHHHHHHh---cccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 015462 190 YNQDGQLSFKEFSDLISAF---GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQ 245 (406)
Q Consensus 190 ~d~dG~I~~~Ef~~~l~~l---g~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~ 245 (406)
..+...++-..|..++... +..++...++-+|..+-..+...|++++|..+|..+.
T Consensus 13 ~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 13 KKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp TSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 4444678889999988873 4557888899999998666667799999999987654
No 254
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=61.02 E-value=35 Score=30.36 Aligned_cols=69 Identities=13% Similarity=0.207 Sum_probs=39.2
Q ss_pred ccEEEEEEEEEEE-cCC-C--CCeEEEEE--ecCcee----EeeecCCCCCCcccceEEEEeee-CC--CceeEEEEeec
Q 015462 52 FAGIALLTLISAE-MKF-K--DKWLACVS--LGEQTC----RTAISDNTDKPIWNSEKKLLLET-NG--PHVARISVFET 118 (406)
Q Consensus 52 ~~g~l~v~v~~a~-~~~-~--~dP~v~vs--~g~k~~----kT~vi~~tLnP~wne~~~~~~e~-~~--~~~l~fsV~D~ 118 (406)
+.-.++|+|++++ +.. . .+=+|.+. .|.+.+ .|+.+.-.-.|.|||.+.|.+.. +. .-.+.|++|+.
T Consensus 6 ~~~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 6 IEEKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred cCCCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 3446788888886 333 2 22344432 366655 45444434569999955553332 12 23378999986
Q ss_pred cc
Q 015462 119 NR 120 (406)
Q Consensus 119 D~ 120 (406)
..
T Consensus 86 ~~ 87 (173)
T cd08693 86 SK 87 (173)
T ss_pred cc
Confidence 53
No 255
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=60.00 E-value=15 Score=32.90 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=29.4
Q ss_pred ceeEeeecCCCCCCcccceEEEEeeeCC--CceeEEEEeeccccCCC---cccCcceeechh
Q 015462 80 QTCRTAISDNTDKPIWNSEKKLLLETNG--PHVARISVFETNRLSKS---NLEGYCEVDLLE 136 (406)
Q Consensus 80 k~~kT~vi~~tLnP~wne~~~~~~e~~~--~~~l~fsV~D~D~~s~~---D~iG~~~l~L~~ 136 (406)
..+.|.+..|+.+|.|+|++++-+-.+. .+-+.|+++....-... ..+|.+-++|.+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4578888899999999998887655333 45578888875542222 346666665544
No 256
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=59.73 E-value=7.3 Score=38.26 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=46.4
Q ss_pred hhhhhccCCCCCcchhhhhhcccCCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhc
Q 015462 146 SEVFDLLDPSSSNKIVGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG 209 (406)
Q Consensus 146 ~e~F~~~D~d~dG~Il~~~l~~l~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg 209 (406)
.-||+.+|.|.||.+-...+..+.. ...+.- ++.+|...|...||.|+-.|....+..-.
T Consensus 253 gWMFnklD~N~Dl~Ld~sEl~~I~l-dknE~C---ikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 253 GWMFNKLDTNYDLLLDQSELRAIEL-DKNEAC---IKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhccccccccccCHHHhhhhhc-cCchhH---HHHHHhhhcccccCccccchhhhhhccCC
Confidence 4589999999999986666665544 233334 78899999999999999999988776543
No 257
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=59.47 E-value=15 Score=42.28 Aligned_cols=59 Identities=12% Similarity=0.254 Sum_probs=49.7
Q ss_pred HhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHH
Q 015462 183 RILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLA 242 (406)
Q Consensus 183 ~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~ 242 (406)
..|+.+|+|+.|.|+..+|..+|... ...+..+++-+......|.+...+++||+.-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 35678999999999999999998652 345778899999999999999999999987664
No 258
>PLN02952 phosphoinositide phospholipase C
Probab=59.01 E-value=22 Score=37.96 Aligned_cols=53 Identities=23% Similarity=0.398 Sum_probs=40.4
Q ss_pred CCCceeHHHHHHHHHHhcc--cCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 015462 192 QDGQLSFKEFSDLISAFGN--QVAANKKEELFKAADKNGDGVVSVDELAALLALQQ 245 (406)
Q Consensus 192 ~dG~I~~~Ef~~~l~~lg~--~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~ 245 (406)
+.|.++|+||..+...+.. ..+..++..+|..+-. +++.++.++|..+|....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQ 67 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhC
Confidence 3589999999877666532 2356889999999864 446899999999998754
No 259
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=58.78 E-value=23 Score=31.13 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=30.9
Q ss_pred CCCCcccceEEEEeeeC-C--CceeEEEEeeccccCCCcccCcceeechh
Q 015462 90 TDKPIWNSEKKLLLETN-G--PHVARISVFETNRLSKSNLEGYCEVDLLE 136 (406)
Q Consensus 90 tLnP~wne~~~~~~e~~-~--~~~l~fsV~D~D~~s~~D~iG~~~l~L~~ 136 (406)
+..+.|||...|.+... . .-.+.|++||.+.-...-.+|.+.+++.+
T Consensus 57 ~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 57 KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 45688999776655432 2 33489999998754444567777776655
No 260
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=56.55 E-value=20 Score=39.83 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=52.8
Q ss_pred HHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcH--HHHHHHHH---HhccCCCCCCCHHHHHHHHHhhc
Q 015462 178 KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAA--NKKEELFK---AADKNGDGVVSVDELAALLALQQ 245 (406)
Q Consensus 178 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~--eei~~~F~---~~D~d~dG~Is~~E~~~~l~~~~ 245 (406)
...++.+|..+|....|..++++|+..+..+|....+ +-+.++|. ..|.++-|.+++.|+.+.|....
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 3448899999999999999999999999998876553 22444444 45666679999999999887643
No 261
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=56.28 E-value=16 Score=35.46 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=43.8
Q ss_pred hhhhhccCCCCCcch----hh----hhhcccCCCCChhh----------HHHHHHHhchhcccCCCCceeHHHHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKI----VG----KISLSCSVEDPIET----------EKSFARRILSIVDYNQDGQLSFKEFSDLISA 207 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I----l~----~~l~~l~~~~~~e~----------e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~ 207 (406)
.-.|.+.|.|+||.+ +. ..+..+- ++... ...+-..+++.+|.|.|..|+.+||+.....
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvY--dpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVY--DPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhc--CCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 567888999999987 21 2222221 22211 1222345788999999999999999998776
Q ss_pred hcccCcHHHH
Q 015462 208 FGNQVAANKK 217 (406)
Q Consensus 208 lg~~~~~eei 217 (406)
-....+.+++
T Consensus 325 kef~~p~e~W 334 (442)
T KOG3866|consen 325 KEFNPPKEEW 334 (442)
T ss_pred cccCCcchhh
Confidence 4433343333
No 262
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=55.76 E-value=14 Score=37.25 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=52.0
Q ss_pred ecCceeEeeecCCCCCCcccceEEEEeeeC-----------CCceeEEEEeeccccC-CCcccCcceeechhcccCCCcc
Q 015462 77 LGEQTCRTAISDNTDKPIWNSEKKLLLETN-----------GPHVARISVFETNRLS-KSNLEGYCEVDLLEFLTKDSDA 144 (406)
Q Consensus 77 ~g~k~~kT~vi~~tLnP~wne~~~~~~e~~-----------~~~~l~fsV~D~D~~s-~~D~iG~~~l~L~~lLs~~e~~ 144 (406)
...++.+|.+++.+-.|++.|.|++.+... ....+.|++|-+-.|. .|.++|.|.+.+.-+-+.-++
T Consensus 401 D~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei- 479 (523)
T KOG3837|consen 401 DSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEI- 479 (523)
T ss_pred cccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccch-
Confidence 356888999999999999999666654420 0233789999888765 455689998887765433333
Q ss_pred hhhhhhccCC
Q 015462 145 DSEVFDLLDP 154 (406)
Q Consensus 145 ~~e~F~~~D~ 154 (406)
.+.+.+.|-
T Consensus 480 -~e~~~l~DG 488 (523)
T KOG3837|consen 480 -CEYLPLKDG 488 (523)
T ss_pred -hhceecccc
Confidence 445555543
No 263
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=55.75 E-value=34 Score=30.45 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=47.0
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhccc-------CcHHHHHHHHHHhccCCCCCCCHHHHHHHH
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQ-------VAANKKEELFKAADKNGDGVVSVDELAALL 241 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~-------~~~eei~~~F~~~D~d~dG~Is~~E~~~~l 241 (406)
.+++|..++..+.+.+++.|+..++....+. .+.-|+..++... +|.+|.+..|+++.+.
T Consensus 98 Fe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 98 FEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 7889999999888999999999999874332 2345666667665 5778999999998775
No 264
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=54.93 E-value=25 Score=31.89 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=26.7
Q ss_pred ceeEeeecCCCCCCcccceEEEEeeeCC--CceeEEEEe
Q 015462 80 QTCRTAISDNTDKPIWNSEKKLLLETNG--PHVARISVF 116 (406)
Q Consensus 80 k~~kT~vi~~tLnP~wne~~~~~~e~~~--~~~l~fsV~ 116 (406)
..++|.|..|+-+|.|+|++++.+..+. ..-+.|+.+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~Ftfr 91 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFR 91 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEE
Confidence 3578999999999999999988665332 333556443
No 265
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=54.33 E-value=10 Score=28.48 Aligned_cols=29 Identities=31% Similarity=0.412 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHhccCCCCCCCHHHHHHHH
Q 015462 212 VAANKKEELFKAADKNGDGVVSVDELAALL 241 (406)
Q Consensus 212 ~~~eei~~~F~~~D~d~dG~Is~~E~~~~l 241 (406)
.+.+++.++|+.+ .++.++||.+||.+.|
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 3568899999999 7888999999999987
No 266
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=51.17 E-value=66 Score=25.67 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=35.7
Q ss_pred CCeEEEEEecC-ceeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeeccc
Q 015462 69 DKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNR 120 (406)
Q Consensus 69 ~dP~v~vs~g~-k~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D~ 120 (406)
++-.+++.+.+ .+-.|.+... -+..|++ +|.++.+-..++.+.||-+|-
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ--~Fti~LdRsRELEI~VywrD~ 58 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQ--SFTLELERSRELEIAVYWRDW 58 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccc--eeEEEeecccEEEEEEEEecc
Confidence 44555666655 5567877764 5899999 777776677889999998764
No 267
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=47.86 E-value=77 Score=28.60 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=42.1
Q ss_pred cCCccEEEEEEEEEEEcCCCCCeEEEEEecC-----ceeEeeecCCCCCCcccceEEEEeeeCC--CceeEEEEeecc
Q 015462 49 EEDFAGIALLTLISAEMKFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLLETNG--PHVARISVFETN 119 (406)
Q Consensus 49 ~~~~~g~l~v~v~~a~~~~~~dP~v~vs~g~-----k~~kT~vi~~tLnP~wne~~~~~~e~~~--~~~l~fsV~D~D 119 (406)
++++. +.|++.... +-..+|..+|..|. ..+.|.|..|+-+|.|++++++.+-.+. .+=+.|+.+.-+
T Consensus 23 aRNI~--V~V~lrd~D-~~~~~~l~~I~~g~g~~~~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 23 ARNIA--VCIEFRDSD-EEDAKPLKCIYYGPGGGFTTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred cccEE--EEEEEEeCC-CCcCccceEEecCCCCCcceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 44544 555555443 11235555664432 3568888999999999998888655332 344777777654
No 268
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=47.24 E-value=73 Score=28.29 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=26.3
Q ss_pred eeEeeecCCCCCCcccceEEEEeeeCC--CceeEEEEeeccc
Q 015462 81 TCRTAISDNTDKPIWNSEKKLLLETNG--PHVARISVFETNR 120 (406)
Q Consensus 81 ~~kT~vi~~tLnP~wne~~~~~~e~~~--~~~l~fsV~D~D~ 120 (406)
.++|.+..+ -+|.|++++++.+-.+. .+-+.|++++.+.
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~ 94 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSS 94 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEcccc
Confidence 344544444 89999998888665433 4557888887653
No 269
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=46.64 E-value=63 Score=27.87 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=44.4
Q ss_pred cEEEEEEEEEEEc-C----CCCCeEEEEEe--cCcee----EeeecCCCCCCcccceEEEEeee-CC--CceeEEEEeec
Q 015462 53 AGIALLTLISAEM-K----FKDKWLACVSL--GEQTC----RTAISDNTDKPIWNSEKKLLLET-NG--PHVARISVFET 118 (406)
Q Consensus 53 ~g~l~v~v~~a~~-~----~~~dP~v~vs~--g~k~~----kT~vi~~tLnP~wne~~~~~~e~-~~--~~~l~fsV~D~ 118 (406)
...++|+|.+..- . ...+-+|.+.+ |.+.. .|.......++.|||...|.+.. +. .-.+.|++|+.
T Consensus 7 ~~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 7 NFNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 3455666666642 1 12233444432 44422 33333333679999955553322 12 23478999987
Q ss_pred cccC--CCcccCcceeechh
Q 015462 119 NRLS--KSNLEGYCEVDLLE 136 (406)
Q Consensus 119 D~~s--~~D~iG~~~l~L~~ 136 (406)
+.-. ....+|.+.+++.+
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred ecCCCCcceEEEEEeEEeEc
Confidence 6533 33457777776655
No 270
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=46.57 E-value=38 Score=37.74 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=64.5
Q ss_pred hhhhhccCCCCCcch----hhhhhcccCCCCCh-hhHHHHHHHhchhcccCCCCceeHHHHHHHHHHhcc-cCcHHHHHH
Q 015462 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPI-ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGN-QVAANKKEE 219 (406)
Q Consensus 146 ~e~F~~~D~d~dG~I----l~~~l~~l~~~~~~-e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~-~~~~eei~~ 219 (406)
+.+|+.+|....|.. +...+..+++.... +.-...|..++...|.+..|.+++.+|...|..-.. ..++..+..
T Consensus 750 rAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r~i~ 829 (890)
T KOG0035|consen 750 RALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELRAIL 829 (890)
T ss_pred HHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHHHHH
Confidence 567777777666655 44455566653222 111344788888889999999999999999887433 334566777
Q ss_pred HHHHhccCCCCCCCHHHHHH
Q 015462 220 LFKAADKNGDGVVSVDELAA 239 (406)
Q Consensus 220 ~F~~~D~d~dG~Is~~E~~~ 239 (406)
.|..+=++.. +|..+||+.
T Consensus 830 s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 830 AFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHcchh-HHHHHHHHh
Confidence 8887765554 789999887
No 271
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=46.37 E-value=91 Score=27.96 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=35.9
Q ss_pred cEEEEEEEEEEE---cCCCCCeEEEEE----ecCcee---EeeecCCCCCCcccceEEEEeee-CC--CceeEEEEeec
Q 015462 53 AGIALLTLISAE---MKFKDKWLACVS----LGEQTC---RTAISDNTDKPIWNSEKKLLLET-NG--PHVARISVFET 118 (406)
Q Consensus 53 ~g~l~v~v~~a~---~~~~~dP~v~vs----~g~k~~---kT~vi~~tLnP~wne~~~~~~e~-~~--~~~l~fsV~D~ 118 (406)
..-++|+|.+++ .....++.+.|. -|.+.+ +|....-+-+|.|||...|.+.. +. .-.+.|++||.
T Consensus 9 ~~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 9 DRKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CCCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 334566666665 222223333332 244443 55555556679999965554332 12 33478999985
No 272
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=45.36 E-value=29 Score=26.08 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=32.3
Q ss_pred CceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 194 GQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 194 G~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
-.++|..+..++... ++.+.+..+...|+.=..+.|+.+||++.|+..
T Consensus 7 p~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356777777766653 344445555555554457899999999999764
No 273
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=43.89 E-value=70 Score=28.23 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=48.0
Q ss_pred CccEEEEEEEEEEE---cC---CCCCeEEEEEe--cCceeE----eeecC----CCCCCcccceEEEEeee-CC--Ccee
Q 015462 51 DFAGIALLTLISAE---MK---FKDKWLACVSL--GEQTCR----TAISD----NTDKPIWNSEKKLLLET-NG--PHVA 111 (406)
Q Consensus 51 ~~~g~l~v~v~~a~---~~---~~~dP~v~vs~--g~k~~k----T~vi~----~tLnP~wne~~~~~~e~-~~--~~~l 111 (406)
.+...++|+|.+++ .. -.++-|+.+.+ |.+.++ |+... ..-.+.|||...|.+.. +. .-.+
T Consensus 5 ~v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL 84 (171)
T cd04012 5 TVTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRL 84 (171)
T ss_pred cccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEE
Confidence 45667889988886 12 23567777644 666553 32211 12357799955543332 12 2337
Q ss_pred EEEEeeccccC---------CCcccCcceeechh
Q 015462 112 RISVFETNRLS---------KSNLEGYCEVDLLE 136 (406)
Q Consensus 112 ~fsV~D~D~~s---------~~D~iG~~~l~L~~ 136 (406)
.|++|+...-. ....+|.+.+++.+
T Consensus 85 ~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 85 VLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 89999876533 22346666555544
No 274
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=42.15 E-value=31 Score=26.25 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=31.5
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHhhcccCccccCchhHHHhhhhc
Q 015462 216 KKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVA 264 (406)
Q Consensus 216 ei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~~~~~~~cp~~~~~l~~~ 264 (406)
+|..+|..+-. +.+.||.++|..+|......... +-..|.+++...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~--~~~~~~~li~~~ 46 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRL--TDEQAKELIEKF 46 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTS--SHHHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccC--cHHHHHHHHHHH
Confidence 57899999955 78999999999999765433111 112466666554
No 275
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=40.88 E-value=1.2e+02 Score=30.05 Aligned_cols=99 Identities=17% Similarity=0.317 Sum_probs=66.1
Q ss_pred EEEEEEEEE-cCCC-CCe-EEEEEecCceeEeeecCCCCCCcccceEEEEeeeCC---------CceeEEEEeecc-ccC
Q 015462 56 ALLTLISAE-MKFK-DKW-LACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNG---------PHVARISVFETN-RLS 122 (406)
Q Consensus 56 l~v~v~~a~-~~~~-~dP-~v~vs~g~k~~kT~vi~~tLnP~wne~~~~~~e~~~---------~~~l~fsV~D~D-~~s 122 (406)
+-|.|++|+ +... .-| ++..++....+-|--+.++-.|.||. .++-|.+. ...+.+.+|--| .-+
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~t--eL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~ 79 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNT--ELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG 79 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeec--ceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence 568899996 4333 334 45568899999999999999999999 77666322 222555555554 335
Q ss_pred CCcccCcceeechhc-ccCCCc-ch-hhhhhccCCCC
Q 015462 123 KSNLEGYCEVDLLEF-LTKDSD-AD-SEVFDLLDPSS 156 (406)
Q Consensus 123 ~~D~iG~~~l~L~~l-Ls~~e~-~~-~e~F~~~D~d~ 156 (406)
..+.+|++-+++... +++... .. ..||.++-..+
T Consensus 80 ~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~ 116 (340)
T PF12416_consen 80 KRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS 116 (340)
T ss_pred cceeccEEEEEccccccccccccccCCCeeEcccccc
Confidence 668899999998876 222221 12 67888876643
No 276
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=40.80 E-value=68 Score=25.17 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=30.9
Q ss_pred eEEEeeCcccchhhhhc-cceeEEEEEeeeeccccCCccchHHHHHHH----HhhHHhhc
Q 015462 324 HILVFDRRTKRLVEELI-DVKIVMSMRAIYQSKIGLGLMDIGTKELLK----SISEKQGR 378 (406)
Q Consensus 324 ~i~~~dr~tg~~~~E~~-~~~~~~~~~~ly~~~~~~~~~~~~~~~~~~----~~s~~~g~ 378 (406)
++.++|..+| |++ ++.+.+.+|+.|++..+ .+.+..+..+.. .+..+.|.
T Consensus 37 ~v~l~D~y~~----~~l~~g~kS~~~rl~~~~~~~-TLt~~ev~~~~~~i~~~l~~~~~~ 91 (94)
T PF03147_consen 37 SVELFDVYRG----EKLPEGKKSLTYRLTYQSPDR-TLTDEEVNEIHDKIIKALEKKLGA 91 (94)
T ss_dssp EEEEEEEEES----TTSGTTEEEEEEEEEE--SSS----HHHHHHHHHHHHHHHHHTCT-
T ss_pred EEEEEEEEcC----CCCCCCcEEEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHhCc
Confidence 7889999998 444 37888999999998754 675554444444 45555554
No 277
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=39.90 E-value=73 Score=35.47 Aligned_cols=82 Identities=12% Similarity=0.091 Sum_probs=50.3
Q ss_pred eeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhccc------CccccCchhHHHhhhhccccCC
Q 015462 196 LSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQEK------EPLMNCCPVCGETLEVADMVNT 269 (406)
Q Consensus 196 I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~e~------~~~~~~cp~~~~~l~~~D~~~d 269 (406)
.+++.|..++..+. +..+++++|..+.-+..-++|.++|..+|....-. ..+...-..+..+|.+...+.+
T Consensus 205 f~~e~f~~~l~klc---pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~ 281 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLC---PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSD 281 (1189)
T ss_pred ccHHHHHHHHHhcC---CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchh
Confidence 34555566665543 33679999999998888999999999999875311 1111111134555655544444
Q ss_pred ee-eEeeecccC
Q 015462 270 MI-HLTLCFDEG 280 (406)
Q Consensus 270 ii-h~~ic~def 280 (406)
.. .+.++.|+|
T Consensus 282 ~a~~gqms~dgf 293 (1189)
T KOG1265|consen 282 NAEKGQMSTDGF 293 (1189)
T ss_pred hhhccccchhhh
Confidence 33 456666665
No 278
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.75 E-value=12 Score=41.74 Aligned_cols=62 Identities=26% Similarity=0.366 Sum_probs=54.0
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
...+|...|.+.+|.|+..++...+.. ..++...+...+...|.++.|.|+++|+.-.+..+
T Consensus 285 ~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 285 YSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 566899999999999999999998877 55678889999999999999999999987666543
No 279
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=35.81 E-value=54 Score=27.84 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=33.7
Q ss_pred EeeecCCC-CCCcccceEEEEeee-CC--CceeEEEEeeccccCCC----cccCcceeechhc
Q 015462 83 RTAISDNT-DKPIWNSEKKLLLET-NG--PHVARISVFETNRLSKS----NLEGYCEVDLLEF 137 (406)
Q Consensus 83 kT~vi~~t-LnP~wne~~~~~~e~-~~--~~~l~fsV~D~D~~s~~----D~iG~~~l~L~~l 137 (406)
.|+....+ .+|.|||...|.+.. +. .-.+.|++|+.+.-... ..+|.+.+++.+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 34444444 789999966665442 12 33478999987764443 4678887776654
No 280
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=35.56 E-value=51 Score=28.28 Aligned_cols=37 Identities=11% Similarity=0.281 Sum_probs=25.1
Q ss_pred CCCceeHHHHHHHHHH-hcccCcHHHHHHHHHHhccCC
Q 015462 192 QDGQLSFKEFSDLISA-FGNQVAANKKEELFKAADKNG 228 (406)
Q Consensus 192 ~dG~I~~~Ef~~~l~~-lg~~~~~eei~~~F~~~D~d~ 228 (406)
..+.|+|+.|..+|.. +..+++++-.+.+|..|-...
T Consensus 45 ~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp ETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 3568999999999998 677788888999999886554
No 281
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=33.73 E-value=14 Score=33.54 Aligned_cols=53 Identities=25% Similarity=0.413 Sum_probs=38.5
Q ss_pred hhccc-CCCCceeHHHHHHHHHHhcccCc-HHHHHHHHHHhccCCCCCCCHHHHHHHH
Q 015462 186 SIVDY-NQDGQLSFKEFSDLISAFGNQVA-ANKKEELFKAADKNGDGVVSVDELAALL 241 (406)
Q Consensus 186 ~~~D~-d~dG~I~~~Ef~~~l~~lg~~~~-~eei~~~F~~~D~d~dG~Is~~E~~~~l 241 (406)
-++|. ..||+++-.|+.-+-..+ ++ +.-+..+|.-.|.|+||+|+.+|+...+
T Consensus 194 ~qld~~p~d~~~sh~el~pl~ap~---ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 194 GQLDQHPIDGYLSHTELAPLRAPL---IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccCCCccccccccccccccCCc---ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 34453 457899988886654322 22 2347789999999999999999998776
No 282
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=32.71 E-value=72 Score=28.64 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=28.9
Q ss_pred ceeEeeecCCCCCCcccceEEEEeeeCC--CceeEEEEeecc
Q 015462 80 QTCRTAISDNTDKPIWNSEKKLLLETNG--PHVARISVFETN 119 (406)
Q Consensus 80 k~~kT~vi~~tLnP~wne~~~~~~e~~~--~~~l~fsV~D~D 119 (406)
..+.|.|..|+-+|.|++++++.+-.+. .+=+.|+.+.-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 4568889999999999998888654332 344677777644
No 283
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=29.89 E-value=99 Score=24.93 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=38.7
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccC---CCCCCCHHHHHHHHHhh
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKN---GDGVVSVDELAALLALQ 244 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d---~dG~Is~~E~~~~l~~~ 244 (406)
++.-|..+-. ||.+....|-..+ |...+.+-..++|..+-.- ..+.|+.+||.++-.++
T Consensus 32 VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 32 VEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 4444555544 7999999998876 5556777788888876432 25789999999887654
No 284
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=29.69 E-value=65 Score=18.25 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=5.4
Q ss_pred cCCCCceeHHHH
Q 015462 190 YNQDGQLSFKEF 201 (406)
Q Consensus 190 ~d~dG~I~~~Ef 201 (406)
.|+||.|+--++
T Consensus 2 vN~DG~vna~D~ 13 (21)
T PF00404_consen 2 VNGDGKVNAIDL 13 (21)
T ss_dssp TTSSSSSSHHHH
T ss_pred CCCCCcCCHHHH
Confidence 344444444444
No 285
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=28.82 E-value=1.2e+02 Score=29.71 Aligned_cols=76 Identities=13% Similarity=0.157 Sum_probs=49.3
Q ss_pred cCCccEEEEEEEEEEE---c-----CCCCCeEEEEEecCc-eeEeeecCCCCCCcccceEEEEeeeCCCceeEEEEeecc
Q 015462 49 EEDFAGIALLTLISAE---M-----KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETN 119 (406)
Q Consensus 49 ~~~~~g~l~v~v~~a~---~-----~~~~dP~v~vs~g~k-~~kT~vi~~tLnP~wne~~~~~~e~~~~~~l~fsV~D~D 119 (406)
.-...|+|.+++++|+ + +..-+-|+++-...+ ..||.+....+--.|.| .|-.+......+.+-||-|+
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e--~F~~Dvv~~~vl~~lvySW~ 123 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAE--DFKHDVVNIEVLHYLVYSWP 123 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchh--hceeecccceeeeEEEeecC
Confidence 3447899999999996 2 333456666665554 45666666666678999 44444444566778888887
Q ss_pred ccCCCcc
Q 015462 120 RLSKSNL 126 (406)
Q Consensus 120 ~~s~~D~ 126 (406)
-=.+|.+
T Consensus 124 pq~RHKL 130 (442)
T KOG1452|consen 124 PQRRHKL 130 (442)
T ss_pred chhhccc
Confidence 6444443
No 286
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=27.09 E-value=2.6e+02 Score=22.90 Aligned_cols=45 Identities=11% Similarity=0.298 Sum_probs=31.8
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 015462 201 FSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQ 245 (406)
Q Consensus 201 f~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~~ 245 (406)
+..++.-+...++.+|-..+.+..+.=.+|.|+...+..+|+.+-
T Consensus 55 l~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~ 99 (117)
T PF08349_consen 55 LQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLA 99 (117)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 334444455667777777777777777788888888888876653
No 287
>PLN02228 Phosphoinositide phospholipase C
Probab=25.82 E-value=2e+02 Score=30.72 Aligned_cols=61 Identities=16% Similarity=0.398 Sum_probs=46.0
Q ss_pred HHHhchhcccCCCCceeHHHHHHHHHHhc-cc-CcHHHHHHHHHHhccC----CCCCCCHHHHHHHHHh
Q 015462 181 ARRILSIVDYNQDGQLSFKEFSDLISAFG-NQ-VAANKKEELFKAADKN----GDGVVSVDELAALLAL 243 (406)
Q Consensus 181 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg-~~-~~~eei~~~F~~~D~d----~dG~Is~~E~~~~l~~ 243 (406)
+..+|..+-. ++.++.++|..+|.... .. .+.+.+.++|..+... ..|.++.+.|..+|..
T Consensus 26 i~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 26 IKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 7888887753 36899999999998743 32 3456788888888643 3478999999999854
No 288
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=24.48 E-value=1.7e+02 Score=24.54 Aligned_cols=62 Identities=19% Similarity=0.190 Sum_probs=39.8
Q ss_pred HHHhchhcccCC--CCceeHHHHHHHHHHhcc-------cCc-----------HHHHHHHHHHhccCCCCCCCHHHHHHH
Q 015462 181 ARRILSIVDYNQ--DGQLSFKEFSDLISAFGN-------QVA-----------ANKKEELFKAADKNGDGVVSVDELAAL 240 (406)
Q Consensus 181 ~~~~f~~~D~d~--dG~I~~~Ef~~~l~~lg~-------~~~-----------~eei~~~F~~~D~d~dG~Is~~E~~~~ 240 (406)
+.++|+....+. |..|+..|+..++..+.. ... +--+..++..||.+++|.|+.-.|...
T Consensus 43 v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~Kva 122 (127)
T PF09068_consen 43 VIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVA 122 (127)
T ss_dssp HHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHH
T ss_pred HHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHH
Confidence 556666655544 367999999998887531 111 112566788999999999999999877
Q ss_pred HH
Q 015462 241 LA 242 (406)
Q Consensus 241 l~ 242 (406)
|.
T Consensus 123 L~ 124 (127)
T PF09068_consen 123 LI 124 (127)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 289
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=24.46 E-value=2.8e+02 Score=24.11 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=25.8
Q ss_pred HHHHHHhchhcccCCCCceeHHHHHHHHHH-hcc
Q 015462 178 KSFARRILSIVDYNQDGQLSFKEFSDLISA-FGN 210 (406)
Q Consensus 178 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~-lg~ 210 (406)
..|+..++..-|.+.+|.|++..|...|.. +|.
T Consensus 82 ~s~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGd 115 (175)
T PF04876_consen 82 HSFLEHLLGGEDDSTNGLIDIGKFFDILQPKLGD 115 (175)
T ss_pred HHHHHHHhcCCcCCcccceeHHHHHHHHHHHhhh
Confidence 456777777766667899999999999876 554
No 290
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=24.02 E-value=2.3e+02 Score=20.46 Aligned_cols=40 Identities=20% Similarity=0.407 Sum_probs=27.2
Q ss_pred HHHHHhcccCcHHHHHHHHHHh--ccCCCCCCCHHHHHHHHHhh
Q 015462 203 DLISAFGNQVAANKKEELFKAA--DKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 203 ~~l~~lg~~~~~eei~~~F~~~--D~d~dG~Is~~E~~~~l~~~ 244 (406)
.+|..++. ++-+.+..+++.+ +. +.-.+|.+|+.++|...
T Consensus 4 gMLtN~gs-l~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~l 45 (60)
T PF08672_consen 4 GMLTNLGS-LPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRL 45 (60)
T ss_dssp HHHHHH-S-EEHHHHHHHHHHH-GGG---TT--HHHHHHHHHHH
T ss_pred HHhhcCCC-CCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHH
Confidence 45566666 7888899999988 43 45679999999999765
No 291
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=22.57 E-value=47 Score=22.64 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=11.6
Q ss_pred eEEEeeCcccchh
Q 015462 324 HILVFDRRTKRLV 336 (406)
Q Consensus 324 ~i~~~dr~tg~~~ 336 (406)
.|.|++|+||++.
T Consensus 5 rV~vi~~~tG~~l 17 (45)
T smart00592 5 RVPVINRETGKKL 17 (45)
T ss_pred eeEeeccCCccEe
Confidence 7899999999876
No 292
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=22.01 E-value=2.8e+02 Score=21.72 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=42.6
Q ss_pred HHHHHHhchhcccCCCCceeHHHHHHHHHHhcccCcHHHHHHHHHHhccCCCCCCCHHHHHHHHH
Q 015462 178 KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLA 242 (406)
Q Consensus 178 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d~dG~Is~~E~~~~l~ 242 (406)
..||+.-|. ..-.|.+.+|...|..........+..++=..+|.-.+|+||.=||--+.+
T Consensus 10 ~~FW~~~Fg-----~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 10 AEFWKTSFG-----KRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp HHHHHHHHT-----T-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCC-----CCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 467877663 235799999999999865555555566666678999999999988876554
No 293
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.62 E-value=5.7e+02 Score=22.59 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=46.9
Q ss_pred EEEEEEcCCCCCeEEEEEe-cCcee------------EeeecCCCCCC-cccceEEEEeeeCCCce---eEEEEeecccc
Q 015462 59 TLISAEMKFKDKWLACVSL-GEQTC------------RTAISDNTDKP-IWNSEKKLLLETNGPHV---ARISVFETNRL 121 (406)
Q Consensus 59 ~v~~a~~~~~~dP~v~vs~-g~k~~------------kT~vi~~tLnP-~wne~~~~~~e~~~~~~---l~fsV~D~D~~ 121 (406)
.|.+|++.-.+|-|++.++ ....+ -|.-.++--|| +||-.+...+....++- +.+.||.+|.+
T Consensus 16 qv~sa~FPe~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~ 95 (187)
T KOG4027|consen 16 QVRSAEFPEESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHS 95 (187)
T ss_pred eEEEeecCCCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcC
Confidence 4677888777787776654 11111 11112233444 56664444454433443 78999999999
Q ss_pred CCCcccCcceeech
Q 015462 122 SKSNLEGYCEVDLL 135 (406)
Q Consensus 122 s~~D~iG~~~l~L~ 135 (406)
+++-..|+..+.+-
T Consensus 96 G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 96 GKDCVTGYGMLHIP 109 (187)
T ss_pred CcceeeeeeeEecC
Confidence 99888898876644
No 294
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=21.60 E-value=2e+02 Score=24.71 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=34.3
Q ss_pred CceeHHHHHHHHHHhcccCcHHHHHHHHHHhccC-------CCCCCCHHHHHHHHHhhccc-CccccCchhHHHhhhh
Q 015462 194 GQLSFKEFSDLISAFGNQVAANKKEELFKAADKN-------GDGVVSVDELAALLALQQEK-EPLMNCCPVCGETLEV 263 (406)
Q Consensus 194 G~I~~~Ef~~~l~~lg~~~~~eei~~~F~~~D~d-------~dG~Is~~E~~~~l~~~~e~-~~~~~~cp~~~~~l~~ 263 (406)
+.|+..||.++=.... .+...++.+.+.|..+ .++.|+++-|+.+|+..-+. +|+ +.|...+..
T Consensus 6 ~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~----~lc~hLF~s 77 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPE----DLCQHLFLS 77 (138)
T ss_dssp S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--H----HHHHHHHHH
T ss_pred eccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCH----HHHHHHHHH
Confidence 5788888877543321 1233566666666433 36799999999999875432 333 367776543
No 295
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=21.43 E-value=1e+02 Score=33.07 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh
Q 015462 213 AANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (406)
Q Consensus 213 ~~eei~~~F~~~D~d~dG~Is~~E~~~~l~~~ 244 (406)
+..-+..+|...|.+++|.|++.+|+..|..+
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l 584 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSIL 584 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHH
Confidence 34557889999999999999999999888764
No 296
>KOG3490 consensus Transcription elongation factor SPT4 [Transcription]
Probab=21.18 E-value=67 Score=26.09 Aligned_cols=77 Identities=18% Similarity=0.310 Sum_probs=42.8
Q ss_pred ccCchhHHHhhhhccccCCeeeEeeecccCcccccccCCCcCchhhhhhhHhhhhhcccccccccccCCCCceeEEEeeC
Q 015462 251 MNCCPVCGETLEVADMVNTMIHLTLCFDEGTGNQVMTGGFLTDKQASNVWMFKLSEWGHFSSYDVGLNSGSRAHILVFDR 330 (406)
Q Consensus 251 ~~~cp~~~~~l~~~D~~~diih~~ic~def~~~~~~~~~fvt~~~a~~~w~~k~~~k~~~~~y~~g~~~~~~~~i~~~dr 330 (406)
-.-||.|. +++...+..++...+-...++ ...+|. .++-|..| |...|.+.-| .|-=+
T Consensus 25 ~dGC~Nc~-~l~mkgn~e~V~ecTS~nF~G-iIa~m~--------Pt~SWVak---Wqri~~f~~G---------~YAi~ 82 (111)
T KOG3490|consen 25 KDGCENCP-MLNMKGNVENVYECTSPNFDG-IIAMMS--------PTESWVAK---WQRIGRFTPG---------MYAIS 82 (111)
T ss_pred hcCCCCch-hhhhccCcceeEEecCCCccc-eeeeeC--------ccHHHHHH---HHhhccccCc---------eEEEE
Confidence 34577787 766654433332111111121 233443 35668777 5777777777 45555
Q ss_pred cccchhhhhccceeEEEEE
Q 015462 331 RTKRLVEELIDVKIVMSMR 349 (406)
Q Consensus 331 ~tg~~~~E~~~~~~~~~~~ 349 (406)
-+|.+-+|-+......|++
T Consensus 83 VsG~Lpe~~v~~l~~~g~~ 101 (111)
T KOG3490|consen 83 VSGVLPEEVVESLKSRGVH 101 (111)
T ss_pred ecccCCHHHHHHHHhccee
Confidence 5788888777665555554
No 297
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=20.22 E-value=51 Score=22.58 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=10.2
Q ss_pred eeEEEeeCcccchh
Q 015462 323 AHILVFDRRTKRLV 336 (406)
Q Consensus 323 ~~i~~~dr~tg~~~ 336 (406)
..|.|++|.||++.
T Consensus 6 erV~Vi~~~tGk~l 19 (46)
T PF07533_consen 6 ERVPVINRKTGKRL 19 (46)
T ss_dssp SB--EEETTTTEEE
T ss_pred ceeEeEECCCCCCc
Confidence 47899999999875
No 298
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=20.13 E-value=99 Score=36.28 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=39.5
Q ss_pred hhhhhccCCCCCcchh-hhhhccc-CCCCChhhHHHHHHHhchhcccCCCCceeHHHHHHHHH
Q 015462 146 SEVFDLLDPSSSNKIV-GKISLSC-SVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLIS 206 (406)
Q Consensus 146 ~e~F~~~D~d~dG~Il-~~~l~~l-~~~~~~e~e~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~ 206 (406)
...|+.+|+|+.|.|. +++..++ +...++..+ +.-++.-...|.+..++|+||+.-+.
T Consensus 4060 sdtfkeydpdgkgiiskkdf~kame~~k~ytqse---~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4060 SDTFKEYDPDGKGIISKKDFHKAMEGHKHYTQSE---IDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cccchhcCCCCCccccHHHHHHHHhccccchhHH---HHHHHHhhccCccccccHHHHHHHhc
Confidence 3567888999999882 2232222 233566666 56666677788889999999987543
Done!