BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015463
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 154 bits (389), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 110/343 (32%), Positives = 162/343 (47%), Gaps = 58/343 (16%)
Query: 70 GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSN--NRSELCNPKPIATSYLK 125
P S FD +G YT V DGR++ ++G + DFA+ S N++ C A +
Sbjct: 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKA-FCENSTDA----E 74
Query: 126 NEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID 185
+CGR + ++ + LYI D Y+ L VG EGG AT LAT +GVP ++ + +D
Sbjct: 75 KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 134
Query: 186 DE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD-TGRVLKYDPTTKQTT 243
G VYFTD ST Y R +Q+ I T D TGR++KYDP+TK+TT
Sbjct: 135 QRTGIVYFTDVSTLYDDRGVQQ----------------IMDTSDKTGRLIKYDPSTKETT 178
Query: 244 VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 303
+LL+ L P G +S D SF + E ++ KYWL G K G E +P P N++ N
Sbjct: 179 LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN 237
Query: 304 EKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG 363
G FWV S+ ++ GR+ +K+ G
Sbjct: 238 ADGHFWV----------------------------SSSEELDGNMHGRVDPKGIKFDEFG 269
Query: 364 KILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVA--VYD 404
IL+V+ + +++E DG L++G++ V VYD
Sbjct: 270 NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/338 (31%), Positives = 159/338 (47%), Gaps = 54/338 (15%)
Query: 70 GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSNNRSE-LCNPKPIATSYLKN 126
P S FD +G YT V DGR++ ++G + DFA+ S ++ C A +
Sbjct: 11 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDA----EK 66
Query: 127 EHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD 186
+CGR + ++ + LYI D Y+ L VG EGG AT LAT +GVP ++ + +D
Sbjct: 67 RPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQ 126
Query: 187 E-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD-TGRVLKYDPTTKQTTV 244
G VYFTD ST Y R +Q+ I T D TGR++KYDP+TK+TT+
Sbjct: 127 RTGIVYFTDVSTLYDDRGVQQ----------------IMDTSDKTGRLIKYDPSTKETTL 170
Query: 245 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE 304
LL+ L P G +S D SF + E ++ KYWL G K G E +P P N++ N
Sbjct: 171 LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA 229
Query: 305 KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGK 364
G FWV S+ ++ GR+ +K+ G
Sbjct: 230 DGHFWV----------------------------SSSEELDGNMHGRVDPKGIKFDEFGN 261
Query: 365 ILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAV 402
IL+V+ + +++E DG L++G++ V +
Sbjct: 262 ILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGI 299
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 148 bits (373), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 156/343 (45%), Gaps = 58/343 (16%)
Query: 70 GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSN--NRSELCNPKPIATSYLK 125
P S FD +G YT V DGR+ ++G + DFA+ S N++ C A +
Sbjct: 20 APNSFTFDSTNKGFYTSVQDGRVXKYEGPNSGFVDFAYASPYWNKA-FCENSTDA----E 74
Query: 126 NEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID 185
+CGR + ++ + YI D Y+ L VG EGG AT LAT +GVP ++ + +D
Sbjct: 75 KRPLCGRTYDISYNLQNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 134
Query: 186 DE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD-TGRVLKYDPTTKQTT 243
G VYFTD ST Y R +Q+ I T D TGR+ KYDP+TK+TT
Sbjct: 135 QRTGIVYFTDVSTLYDDRGVQQ----------------IXDTSDKTGRLXKYDPSTKETT 178
Query: 244 VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 303
+L + L P G +S D SF + E ++ KYWL G K G E +P P N++ N
Sbjct: 179 LLXKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN 237
Query: 304 EKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG 363
G FWV+ H GR+ +K+ G
Sbjct: 238 ADGHFWVSSSEELDGNXH----------------------------GRVDPKGIKFDEFG 269
Query: 364 KILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVA--VYD 404
IL+V+ + +++E DG L++G++ V VYD
Sbjct: 270 NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312
>pdb|3HLH|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|B Chain B, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|C Chain C, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|D Chain D, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
Length = 314
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
+ T + E P +S+ + I G++++ D
Sbjct: 131 WITAPAG---------EVAPADATASMQEKFGSIYCFTTDGQMIQVDTA----------F 171
Query: 250 QFPNGLSL 257
QFPNG+++
Sbjct: 172 QFPNGIAV 179
>pdb|3HLI|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|B Chain B, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|C Chain C, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|D Chain D, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
Length = 314
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
+ T + E P +S+ + I G++++ D
Sbjct: 131 WITAPAG---------EVAPADATASMQEKFGSIYCFTTDGQMIQVDTA----------F 171
Query: 250 QFPNGLSL 257
QFPNG+++
Sbjct: 172 QFPNGIAV 179
>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant
Length = 312
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
+ T + E P S+ + I G++++ D
Sbjct: 129 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 169
Query: 250 QFPNGLSL 257
QFPNG+++
Sbjct: 170 QFPNGIAV 177
>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant
Length = 312
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
+ T + E P S+ + I G++++ D
Sbjct: 129 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 169
Query: 250 QFPNGLSL 257
QFPNG+++
Sbjct: 170 QFPNGIAV 177
>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris
pdb|1PJX|A Chain A, 0.85 Angstrom Structure Of Squid Ganglion Dfpase
pdb|2GVV|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase) In
Complex With Dicyclopentylphosphoroamidate (Dcppa)
pdb|2GVW|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase)
Holoenzyme (Rt)
pdb|3BYC|A Chain A, Joint Neutron And X-Ray Structure Of Diisopropyl
Fluorophosphatase. Deuterium Occupancies Are 1-Q, Where
Q Is Occupancy Of H
pdb|3KGG|A Chain A, X-Ray Structure Of Perdeuterated Diisopropyl
Fluorophosphata (Dfpase): Perdeuteration Of Proteins For
Neutron Diffractio
pdb|3O4P|A Chain A, Dfpase At 0.85 Angstrom Resolution (H Atoms Included)
Length = 314
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
+ T + E P S+ + I G++++ D
Sbjct: 131 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 171
Query: 250 QFPNGLSL 257
QFPNG+++
Sbjct: 172 QFPNGIAV 179
>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant
Length = 312
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
+ T + E P S+ + I G++++ D
Sbjct: 129 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 169
Query: 250 QFPNGLSL 257
QFPNG+++
Sbjct: 170 QFPNGIAV 177
>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant
Length = 312
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
+ T + E P S+ + I G++++ D
Sbjct: 129 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 169
Query: 250 QFPNGLSL 257
QFPNG+++
Sbjct: 170 QFPNGIAV 177
>pdb|2IAR|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244h Mutant
Length = 312
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
+ T + E P S+ + I G++++ D
Sbjct: 129 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 169
Query: 250 QFPNGLSL 257
QFPNG+++
Sbjct: 170 QFPNGIAV 177
>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant
Length = 312
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
+ T + E P S+ + I G++++ D
Sbjct: 129 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 169
Query: 250 QFPNGLSL 257
QFPNG+++
Sbjct: 170 QFPNGIAV 177
>pdb|2IAV|A Chain A, Crystal Structure Of Squid Ganglion Dfpase H287a Mutant
Length = 312
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
+ T + E P S+ + I G++++ D
Sbjct: 129 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 169
Query: 250 QFPNGLSL 257
QFPNG+++
Sbjct: 170 QFPNGIAV 177
>pdb|2IAS|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244f Mutant
Length = 312
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
+ T + E P S+ + I G++++ D
Sbjct: 129 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 169
Query: 250 QFPNGLSL 257
QFPNG+++
Sbjct: 170 QFPNGIAV 177
>pdb|2IAT|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244l Mutant
Length = 312
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
+ T + E P S+ + I G++++ D
Sbjct: 129 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 169
Query: 250 QFPNGLSL 257
QFPNG+++
Sbjct: 170 QFPNGIAV 177
>pdb|2GVX|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase),
Mutant D229n N175D
Length = 314
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFTD-----SSTNYQRRQMQK 206
+ T + +Y R +K
Sbjct: 131 WITAPAGEVAPADYTRSMQEK 151
>pdb|2IAW|A Chain A, Crystal Structure Of Squid Ganglion Dfpase N175d Mutant
Length = 312
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTD-----SSTNYQRRQMQK 206
+ T + +Y R +K
Sbjct: 129 WITAPAGEVAPADYTRSMQEK 149
>pdb|3LI3|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), D121e Mutant
Length = 314
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ N+ D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNECAFDYEGNL 130
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
+ T + E P S+ + I G++++ D
Sbjct: 131 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 171
Query: 250 QFPNGLSL 257
QFPNG+++
Sbjct: 172 QFPNGIAV 179
>pdb|2GVU|A Chain A, Crystal Structure Of Diisopropyl Fluorophosphatase
(Dfpase), Mutant D229n N120D
Length = 314
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ +D D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
+ T + E P S+ + I G++++ D
Sbjct: 131 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 171
Query: 250 QFPNGLSL 257
QFPNG+++
Sbjct: 172 QFPNGIAV 179
>pdb|3LI4|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), N120d,N175d,D229n
Mutant
Length = 314
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ +D D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNL 130
Query: 191 YFTD-----SSTNYQRRQMQK 206
+ T + +Y R +K
Sbjct: 131 WITAPAGEVAPADYTRSMQEK 151
>pdb|3LI5|A Chain A, Diisopropyl Fluorophosphatase (Dfpase),
E21q,N120d,N175d,D229n Mutant
Length = 314
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ +D D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNL 130
Query: 191 YFTD-----SSTNYQRRQMQK 206
+ T + +Y R +K
Sbjct: 131 WITAPAGEVAPADYTRSMQEK 151
>pdb|3U0S|A Chain A, Crystal Structure Of An Enzyme Redesigned Through
Multiplayer Online Gaming: Ce6
pdb|3U0S|B Chain B, Crystal Structure Of An Enzyme Redesigned Through
Multiplayer Online Gaming: Ce6
Length = 337
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P+G + D+ L++AD GL+ V +G ++EG ++ D EGN+
Sbjct: 84 GSPIGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCAYCAFDYEGNL 143
Query: 191 YFT 193
+ T
Sbjct: 144 WIT 146
>pdb|3I1C|A Chain A, Crystal Structure Of A Novel Engineered Diels-Alderase:
Da_20_00_a74i
Length = 324
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P+G + D+ L++AD GL+ V +G ++EG ++ D EGN+
Sbjct: 71 GIPIGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCAYCAFDYEGNL 130
Query: 191 YFT 193
+ T
Sbjct: 131 WIT 133
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 38/143 (26%)
Query: 180 NDLDIDDEGNVYFTD---SSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYD 236
ND+ D +G YFTD STN PL G V
Sbjct: 138 NDMVFDSKGGFYFTDFRGYSTN-----------PL------------------GGVYYVS 168
Query: 237 PTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY 296
P + T +++N+ NG++LS D+ E + RLH+ L + A +P Y
Sbjct: 169 PDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY 228
Query: 297 ------PDNVRTNEKGEFWVAIH 313
PD+ + +VA++
Sbjct: 229 FTGHEGPDSCCIDSDDNLYVAMY 251
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 226 TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAG 285
T G V P + T +++N+ NG++LS D+ E + RLH+ L +
Sbjct: 158 TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT 217
Query: 286 NLEAFAILPGY------PDNVRTNEKGEFWVAIH 313
A +P Y PD+ + +VA++
Sbjct: 218 IQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY 251
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 226 TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAG 285
T G V P + T +++N+ NG++LS D+ E + RLH+ L +
Sbjct: 158 TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT 217
Query: 286 NLEAFAILPGY------PDNVRTNEKGEFWVAIH 313
A +P Y PD+ + +VA +
Sbjct: 218 IQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAXY 251
>pdb|1YHP|A Chain A, Solution Structure Of Ca2+-Free Ddcad-1
pdb|2B1O|A Chain A, Solution Structure Of Ca2+-Bound Ddcad-1
Length = 212
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 233 LKYDPTTKQTTVLLRNLQFPNGLSLSK-DKSFFVF 266
KY PTT Q TV+ ++ FP +++++ D + F+F
Sbjct: 172 FKYSPTTGQVTVIKKDETFPKNMTVTQDDNTSFIF 206
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
Query: 133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLD---IDDEGN 189
P GL D + G +Y+AD G +V LA T+ +P ND D +D+ GN
Sbjct: 110 PEGLAVDTQ-GAVYVADR--GNNRVVK---LAAGSKTQTV-LPFTGLNDPDGVAVDNSGN 162
Query: 190 VYFTDSSTNYQRRQMQKEN----IPLQLCS-----SLNDPSPIKITK-DTGRVLKYDPTT 239
VY TD+ N + + N +P + ++++ + +T+ +T +V+K +
Sbjct: 163 VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222
Query: 240 KQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGS 270
+TVL L P +++ D++ +V G+
Sbjct: 223 TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN 254
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 221 SPIKITKDTGRVLKYDPTT-KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 279
+ I+ T+ +GR+ ++ + V L+ FP ++ D S F +GS R+ W
Sbjct: 493 AEIRRTRVSGRMDNHERRVGTEWVVTLQGADFPVTIAADHDGSTVSFDDGSSMRVTSDWT 552
Query: 280 IGEKAGNLEAFAILPGYPDNVRTNE-KGEFWV-------AIHCRRSLYSHLMALYPK 328
G++ NL ++ G P ++ + G F + +H R + L L P+
Sbjct: 553 PGDQLANL----MVDGAPLVLKVGKISGGFRIRTRGADLKVHVRTPRQAELARLMPE 605
>pdb|3DR2|A Chain A, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
pdb|3DR2|B Chain B, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
Length = 305
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 55/154 (35%), Gaps = 22/154 (14%)
Query: 162 GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221
G A L G L NDL + +G ++FTD ++ P Q C P+
Sbjct: 116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRK--------PSQGC-----PA 162
Query: 222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCE------GSVGRLH 275
++ + L D + Q + +L PNGL+ S D+ + GSV
Sbjct: 163 DPELAHHSVYRLPPDGSPLQR---MADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITA 219
Query: 276 KYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFW 309
W G ++ G PD + G W
Sbjct: 220 FAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW 253
>pdb|3TAZ|A Chain A, Crystal Structure Of Nura Bound To Damp And Manganese
pdb|3TAZ|B Chain B, Crystal Structure Of Nura Bound To Damp And Manganese
Length = 471
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 356 AVKYSPEGKILQVLEDSKGKVV-KAISEVEEKDGKLWMG 393
A+ YSP ++VLE S+GK V + + E++E+ +L++G
Sbjct: 244 ALGYSPRVIPIEVLESSRGKSVDELLQELDEEKVELYLG 282
>pdb|3TAI|A Chain A, Crystal Structure Of Nura
pdb|3TAI|B Chain B, Crystal Structure Of Nura
pdb|3TAL|A Chain A, Crystal Structure Of Nura With Manganese
pdb|3TAL|B Chain B, Crystal Structure Of Nura With Manganese
Length = 471
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 356 AVKYSPEGKILQVLEDSKGKVV-KAISEVEEKDGKLWMG 393
A+ YSP ++VLE S+GK V + + E++E+ +L++G
Sbjct: 244 ALGYSPRVIPIEVLESSRGKSVDELLQELDEEKVELYLG 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,983,117
Number of Sequences: 62578
Number of extensions: 567569
Number of successful extensions: 1406
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1368
Number of HSP's gapped (non-prelim): 33
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)