Query 015463
Match_columns 406
No_of_seqs 333 out of 2272
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:32:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 3.4E-57 7.3E-62 419.6 31.6 325 62-406 47-376 (376)
2 PF08450 SGL: SMP-30/Gluconola 99.9 3.9E-25 8.4E-30 204.2 26.3 232 71-394 2-244 (246)
3 COG3386 Gluconolactonase [Carb 99.9 5.8E-23 1.3E-27 192.9 28.7 200 66-313 22-231 (307)
4 PF03088 Str_synth: Strictosid 99.8 6.3E-21 1.4E-25 144.3 7.8 88 180-282 1-89 (89)
5 COG4257 Vgb Streptogramin lyas 99.8 1.9E-17 4E-22 147.0 23.5 240 65-405 58-304 (353)
6 PLN02919 haloacid dehalogenase 99.7 1.7E-14 3.7E-19 156.9 33.6 265 63-405 562-887 (1057)
7 COG4257 Vgb Streptogramin lyas 99.5 3.6E-12 7.8E-17 113.7 22.7 244 58-404 93-345 (353)
8 KOG4499 Ca2+-binding protein R 99.5 8.9E-13 1.9E-17 114.9 17.0 233 72-354 18-267 (310)
9 PLN02919 haloacid dehalogenase 99.4 3.9E-11 8.5E-16 130.9 26.2 209 67-317 622-881 (1057)
10 PF08450 SGL: SMP-30/Gluconola 99.4 8.6E-11 1.9E-15 108.4 21.8 137 133-315 2-155 (246)
11 TIGR02604 Piru_Ver_Nterm putat 99.2 1E-09 2.3E-14 107.2 19.9 171 67-278 12-211 (367)
12 PRK11028 6-phosphogluconolacto 99.2 3.6E-08 7.9E-13 94.9 29.7 191 69-315 35-249 (330)
13 PF10282 Lactonase: Lactonase, 99.1 1.2E-07 2.6E-12 92.0 29.0 207 55-316 25-267 (345)
14 PF10282 Lactonase: Lactonase, 99.1 6.4E-08 1.4E-12 93.9 26.2 216 56-315 75-313 (345)
15 COG3292 Predicted periplasmic 99.1 3.5E-09 7.6E-14 103.3 15.5 147 71-280 167-317 (671)
16 PF03022 MRJP: Major royal jel 99.1 3.4E-08 7.3E-13 92.9 21.1 190 133-395 3-254 (287)
17 COG2706 3-carboxymuconate cycl 99.0 2.2E-07 4.8E-12 86.3 24.7 214 55-315 76-311 (346)
18 PF07995 GSDH: Glucose / Sorbo 99.0 8.4E-08 1.8E-12 92.3 22.1 169 68-272 1-203 (331)
19 COG3386 Gluconolactonase [Carb 98.9 7.5E-08 1.6E-12 91.0 18.7 151 67-271 109-277 (307)
20 PRK11028 6-phosphogluconolacto 98.9 1.2E-06 2.5E-11 84.5 26.3 191 70-313 81-293 (330)
21 COG3292 Predicted periplasmic 98.9 3.9E-08 8.4E-13 96.2 14.4 228 130-405 164-403 (671)
22 COG2706 3-carboxymuconate cycl 98.8 1.4E-05 3.1E-10 74.5 28.6 196 67-317 38-266 (346)
23 TIGR03866 PQQ_ABC_repeats PQQ- 98.8 2.6E-05 5.7E-10 73.0 30.7 171 81-313 2-176 (300)
24 COG3391 Uncharacterized conser 98.7 3.1E-06 6.6E-11 83.2 22.9 186 68-314 73-273 (381)
25 TIGR02604 Piru_Ver_Nterm putat 98.7 6.3E-07 1.4E-11 87.6 16.1 140 130-314 13-203 (367)
26 KOG4659 Uncharacterized conser 98.7 6.7E-06 1.5E-10 87.1 23.1 199 72-315 410-682 (1899)
27 TIGR03606 non_repeat_PQQ dehyd 98.6 2.9E-06 6.4E-11 83.9 19.5 201 64-286 25-267 (454)
28 COG2133 Glucose/sorbosone dehy 98.6 7E-05 1.5E-09 72.6 27.8 188 67-274 65-263 (399)
29 KOG0291 WD40-repeat-containing 98.6 2.6E-05 5.7E-10 78.8 24.1 194 62-315 342-542 (893)
30 TIGR03866 PQQ_ABC_repeats PQQ- 98.6 4.3E-05 9.4E-10 71.5 25.0 181 69-311 73-265 (300)
31 KOG1214 Nidogen and related ba 98.6 2.1E-06 4.7E-11 87.0 16.0 186 70-315 1026-1217(1289)
32 COG3391 Uncharacterized conser 98.5 0.00021 4.6E-09 70.3 27.3 191 70-315 32-228 (381)
33 KOG0315 G-protein beta subunit 98.4 4E-05 8.7E-10 68.1 17.8 190 65-315 80-279 (311)
34 PF06977 SdiA-regulated: SdiA- 98.4 6.6E-05 1.4E-09 68.7 19.9 195 65-313 18-240 (248)
35 PF02239 Cytochrom_D1: Cytochr 98.4 0.00011 2.3E-09 71.8 22.3 157 71-280 39-202 (369)
36 KOG0318 WD40 repeat stress pro 98.4 0.00072 1.6E-08 66.1 26.8 201 61-320 313-513 (603)
37 PRK04922 tolB translocation pr 98.3 0.00041 9E-09 69.5 25.3 175 72-309 207-393 (433)
38 cd00200 WD40 WD40 domain, foun 98.3 0.0014 3.1E-08 59.5 26.8 182 72-313 55-238 (289)
39 cd00200 WD40 WD40 domain, foun 98.3 0.0026 5.7E-08 57.8 27.9 184 69-313 10-197 (289)
40 PRK04792 tolB translocation pr 98.3 0.00074 1.6E-08 67.9 25.9 173 73-307 222-405 (448)
41 KOG4659 Uncharacterized conser 98.2 0.00038 8.2E-09 74.4 22.2 188 67-316 363-614 (1899)
42 KOG1446 Histone H3 (Lys4) meth 98.2 0.0056 1.2E-07 56.4 27.0 186 69-315 15-209 (311)
43 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.00027 5.9E-09 68.0 18.7 103 230-340 27-148 (352)
44 PRK11138 outer membrane biogen 98.1 0.0045 9.8E-08 61.1 28.1 146 82-281 71-224 (394)
45 TIGR03300 assembly_YfgL outer 98.1 0.0051 1.1E-07 60.3 28.3 142 73-280 60-208 (377)
46 PRK02889 tolB translocation pr 98.1 0.0026 5.5E-08 63.7 26.4 174 73-309 200-385 (427)
47 PRK05137 tolB translocation pr 98.1 0.0046 9.9E-08 62.0 28.3 138 133-309 204-348 (435)
48 PF01731 Arylesterase: Arylest 98.1 2.4E-05 5.3E-10 59.0 8.9 53 226-280 32-84 (86)
49 PF03022 MRJP: Major royal jel 98.1 0.00079 1.7E-08 63.4 20.4 194 72-315 4-256 (287)
50 KOG1214 Nidogen and related ba 98.1 0.00012 2.7E-09 74.7 15.5 144 131-313 1025-1176(1289)
51 PRK00178 tolB translocation pr 98.1 0.0035 7.6E-08 62.7 26.3 175 72-309 202-388 (430)
52 TIGR02800 propeller_TolB tol-p 98.0 0.0046 1E-07 61.3 26.5 173 73-307 194-377 (417)
53 PRK11138 outer membrane biogen 98.0 0.0058 1.3E-07 60.4 26.8 179 142-406 205-394 (394)
54 KOG0279 G protein beta subunit 98.0 0.0044 9.6E-08 56.2 22.8 200 55-316 50-254 (315)
55 COG3204 Uncharacterized protei 98.0 0.0056 1.2E-07 56.3 23.6 192 68-314 85-303 (316)
56 KOG4499 Ca2+-binding protein R 98.0 5.8E-05 1.3E-09 66.7 10.5 80 131-242 158-245 (310)
57 PRK05137 tolB translocation pr 98.0 0.0039 8.4E-08 62.5 25.3 174 72-308 205-390 (435)
58 KOG1520 Predicted alkaloid syn 98.0 0.00025 5.3E-09 67.5 15.3 223 6-277 7-292 (376)
59 PF05096 Glu_cyclase_2: Glutam 98.0 0.0013 2.9E-08 60.1 19.4 152 70-279 91-260 (264)
60 PRK03629 tolB translocation pr 98.0 0.0068 1.5E-07 60.6 26.5 137 135-311 247-390 (429)
61 PRK04043 tolB translocation pr 98.0 0.011 2.3E-07 59.0 27.5 171 73-307 192-380 (419)
62 TIGR03300 assembly_YfgL outer 97.9 0.006 1.3E-07 59.8 24.7 62 80-164 105-167 (377)
63 PRK01742 tolB translocation pr 97.8 0.0079 1.7E-07 60.2 24.2 174 71-312 206-389 (429)
64 PRK03629 tolB translocation pr 97.8 0.033 7.1E-07 55.7 28.4 139 133-310 201-346 (429)
65 KOG1273 WD40 repeat protein [G 97.8 0.012 2.5E-07 54.5 21.0 191 64-313 61-268 (405)
66 TIGR03606 non_repeat_PQQ dehyd 97.7 0.0028 6E-08 63.1 18.4 161 130-315 29-250 (454)
67 PRK04922 tolB translocation pr 97.7 0.033 7.1E-07 55.8 26.5 137 134-309 207-350 (433)
68 PF02239 Cytochrom_D1: Cytochr 97.7 0.0094 2E-07 58.3 21.9 176 80-314 5-192 (369)
69 KOG0315 G-protein beta subunit 97.7 0.0051 1.1E-07 55.0 17.6 184 82-323 12-196 (311)
70 PRK02889 tolB translocation pr 97.7 0.052 1.1E-06 54.3 27.4 136 134-308 199-341 (427)
71 PRK04792 tolB translocation pr 97.7 0.053 1.2E-06 54.6 27.2 136 135-309 222-364 (448)
72 PTZ00421 coronin; Provisional 97.7 0.037 8.1E-07 56.2 25.6 167 63-280 70-245 (493)
73 TIGR02658 TTQ_MADH_Hv methylam 97.7 0.0071 1.5E-07 58.3 19.3 116 142-281 206-331 (352)
74 PF07995 GSDH: Glucose / Sorbo 97.7 0.0013 2.8E-08 63.4 14.5 159 131-315 2-202 (331)
75 PF07433 DUF1513: Protein of u 97.6 0.0059 1.3E-07 57.1 17.9 188 74-315 56-277 (305)
76 PF06977 SdiA-regulated: SdiA- 97.6 0.0068 1.5E-07 55.6 17.7 161 65-277 61-247 (248)
77 KOG1446 Histone H3 (Lys4) meth 97.6 0.0072 1.6E-07 55.7 17.4 160 62-280 94-262 (311)
78 KOG0282 mRNA splicing factor [ 97.6 0.0054 1.2E-07 59.5 16.9 194 65-317 255-455 (503)
79 KOG0266 WD40 repeat-containing 97.5 0.014 2.9E-07 59.0 20.6 158 65-280 200-364 (456)
80 PF05787 DUF839: Bacterial pro 97.5 0.0012 2.6E-08 67.3 12.6 127 130-267 349-519 (524)
81 KOG2106 Uncharacterized conser 97.5 0.063 1.4E-06 52.7 23.0 99 70-196 248-348 (626)
82 PRK02888 nitrous-oxide reducta 97.5 0.0078 1.7E-07 61.5 17.8 91 230-320 296-400 (635)
83 KOG2055 WD40 repeat protein [G 97.5 0.036 7.8E-07 53.7 20.7 183 70-314 215-406 (514)
84 KOG0291 WD40-repeat-containing 97.5 0.014 3E-07 59.7 18.8 160 65-280 389-550 (893)
85 KOG0266 WD40 repeat-containing 97.4 0.11 2.3E-06 52.5 25.6 184 72-313 163-353 (456)
86 COG3211 PhoX Predicted phospha 97.4 0.0015 3.3E-08 64.9 10.9 119 130-269 416-573 (616)
87 TIGR03032 conserved hypothetic 97.4 0.034 7.4E-07 52.0 18.8 217 54-316 38-263 (335)
88 TIGR02800 propeller_TolB tol-p 97.4 0.19 4E-06 49.9 27.4 140 134-312 193-339 (417)
89 TIGR03118 PEPCTERM_chp_1 conse 97.4 0.06 1.3E-06 50.1 20.2 151 228-405 108-278 (336)
90 KOG0279 G protein beta subunit 97.4 0.021 4.6E-07 51.9 16.9 163 61-280 98-262 (315)
91 PRK01029 tolB translocation pr 97.3 0.19 4E-06 50.3 25.8 74 231-307 306-383 (428)
92 PF03088 Str_synth: Strictosid 97.3 0.0014 3.1E-08 49.8 8.0 56 135-195 2-76 (89)
93 PF13360 PQQ_2: PQQ-like domai 97.3 0.11 2.5E-06 46.8 25.0 171 78-313 35-220 (238)
94 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.13 2.8E-06 46.7 21.4 74 74-167 99-172 (354)
95 KOG0318 WD40 repeat stress pro 97.3 0.22 4.8E-06 49.2 26.0 220 70-312 192-423 (603)
96 PRK00178 tolB translocation pr 97.3 0.24 5.2E-06 49.4 28.1 136 134-308 202-344 (430)
97 PF13360 PQQ_2: PQQ-like domai 97.3 0.13 2.9E-06 46.4 26.8 100 142-280 36-140 (238)
98 PF07433 DUF1513: Protein of u 97.3 0.14 3E-06 48.1 21.9 107 131-268 5-117 (305)
99 PF14583 Pectate_lyase22: Olig 97.3 0.039 8.3E-07 53.4 18.7 134 135-282 85-226 (386)
100 COG3823 Glutamine cyclotransfe 97.2 0.0053 1.1E-07 53.7 11.3 103 131-268 131-247 (262)
101 COG4946 Uncharacterized protei 97.2 0.015 3.3E-07 56.5 15.0 88 220-312 371-460 (668)
102 PLN00181 protein SPA1-RELATED; 97.2 0.51 1.1E-05 51.2 29.0 160 71-281 486-649 (793)
103 KOG0265 U5 snRNP-specific prot 97.1 0.08 1.7E-06 48.8 18.4 150 73-279 52-203 (338)
104 PF08662 eIF2A: Eukaryotic tra 97.1 0.11 2.4E-06 45.9 19.0 103 131-270 60-164 (194)
105 PF05787 DUF839: Bacterial pro 97.1 0.037 8.1E-07 56.5 17.9 86 173-272 346-457 (524)
106 PF05096 Glu_cyclase_2: Glutam 97.0 0.14 3.1E-06 47.0 19.3 154 177-405 45-202 (264)
107 PTZ00420 coronin; Provisional 97.0 0.51 1.1E-05 48.7 25.1 165 65-280 71-248 (568)
108 PF13449 Phytase-like: Esteras 97.0 0.1 2.2E-06 50.1 19.1 64 132-196 86-167 (326)
109 KOG0263 Transcription initiati 97.0 0.041 8.9E-07 56.5 16.7 184 72-321 455-646 (707)
110 KOG0263 Transcription initiati 97.0 0.077 1.7E-06 54.6 18.5 157 130-325 451-608 (707)
111 KOG0293 WD40 repeat-containing 96.9 0.29 6.4E-06 47.1 20.9 151 133-324 272-425 (519)
112 PRK01742 tolB translocation pr 96.9 0.19 4.1E-06 50.3 21.4 117 153-307 185-304 (429)
113 KOG0289 mRNA splicing factor [ 96.9 0.33 7.1E-06 47.0 21.3 142 133-312 306-450 (506)
114 cd00216 PQQ_DH Dehydrogenases 96.9 0.57 1.2E-05 47.7 26.5 53 352-405 364-423 (488)
115 COG3204 Uncharacterized protei 96.9 0.07 1.5E-06 49.3 16.1 168 63-279 123-311 (316)
116 KOG2106 Uncharacterized conser 96.9 0.16 3.4E-06 50.0 19.2 151 65-281 326-478 (626)
117 PF06433 Me-amine-dh_H: Methyl 96.9 0.15 3.3E-06 48.5 18.7 110 143-281 3-127 (342)
118 PRK04043 tolB translocation pr 96.9 0.58 1.3E-05 46.6 27.7 137 134-311 191-335 (419)
119 KOG0772 Uncharacterized conser 96.8 0.29 6.2E-06 48.4 20.3 202 67-312 213-427 (641)
120 KOG2139 WD40 repeat protein [G 96.8 0.46 1E-05 45.1 23.1 146 134-317 199-368 (445)
121 KOG0772 Uncharacterized conser 96.8 0.098 2.1E-06 51.6 16.9 225 65-341 164-411 (641)
122 KOG0316 Conserved WD40 repeat- 96.8 0.36 7.7E-06 43.2 19.0 174 72-312 21-201 (307)
123 PTZ00421 coronin; Provisional 96.8 0.4 8.6E-06 48.8 22.3 160 70-281 127-291 (493)
124 TIGR03032 conserved hypothetic 96.8 0.44 9.6E-06 44.8 20.3 145 130-315 48-222 (335)
125 KOG0294 WD40 repeat-containing 96.8 0.46 1E-05 44.2 22.5 178 71-314 46-228 (362)
126 cd00216 PQQ_DH Dehydrogenases 96.7 0.33 7.2E-06 49.4 21.5 69 142-243 61-133 (488)
127 KOG4649 PQQ (pyrrolo-quinoline 96.7 0.075 1.6E-06 48.2 14.2 142 80-282 63-219 (354)
128 KOG2055 WD40 repeat protein [G 96.6 0.062 1.3E-06 52.2 14.2 182 70-315 305-504 (514)
129 KOG2048 WD40 repeat protein [G 96.6 1.1 2.3E-05 45.9 23.5 158 71-282 113-277 (691)
130 PF01436 NHL: NHL repeat; Int 96.6 0.005 1.1E-07 35.9 4.1 28 249-277 1-28 (28)
131 KOG1274 WD40 repeat protein [G 96.6 0.81 1.7E-05 48.3 22.5 157 67-281 12-169 (933)
132 COG1520 FOG: WD40-like repeat 96.5 0.97 2.1E-05 44.2 22.5 146 76-280 65-217 (370)
133 KOG0282 mRNA splicing factor [ 96.5 0.11 2.5E-06 50.6 14.8 157 58-277 204-369 (503)
134 PF13449 Phytase-like: Esteras 96.5 0.22 4.7E-06 47.9 17.0 156 131-314 20-234 (326)
135 KOG1407 WD40 repeat protein [F 96.4 0.72 1.6E-05 41.9 21.8 192 62-314 14-209 (313)
136 PF02333 Phytase: Phytase; In 96.3 1.2 2.6E-05 43.4 23.3 30 250-280 208-237 (381)
137 COG2133 Glucose/sorbosone dehy 96.3 0.62 1.3E-05 45.6 19.1 64 251-314 315-386 (399)
138 KOG0278 Serine/threonine kinas 96.3 0.12 2.5E-06 46.6 12.6 137 136-315 149-288 (334)
139 PRK01029 tolB translocation pr 96.3 1.5 3.2E-05 43.9 22.9 119 153-307 166-293 (428)
140 PRK13684 Ycf48-like protein; P 96.2 1.2 2.7E-05 42.8 26.5 82 230-315 152-235 (334)
141 KOG0286 G-protein beta subunit 96.2 1 2.2E-05 41.6 21.1 159 59-278 136-301 (343)
142 KOG0271 Notchless-like WD40 re 96.2 0.28 6.1E-06 46.7 15.3 213 60-315 239-472 (480)
143 PF02333 Phytase: Phytase; In 96.1 1.2 2.6E-05 43.4 19.9 84 231-314 130-228 (381)
144 PF01436 NHL: NHL repeat; Int 96.1 0.016 3.4E-07 33.8 4.4 24 132-156 3-27 (28)
145 KOG0289 mRNA splicing factor [ 96.1 0.24 5.3E-06 47.9 14.6 149 71-277 350-502 (506)
146 smart00135 LY Low-density lipo 96.0 0.025 5.5E-07 36.1 5.7 38 245-282 4-41 (43)
147 KOG2048 WD40 repeat protein [G 96.0 2.2 4.7E-05 43.8 22.9 154 70-280 71-233 (691)
148 KOG1539 WD repeat protein [Gen 96.0 0.36 7.8E-06 50.3 16.1 184 70-315 450-638 (910)
149 KOG0272 U4/U6 small nuclear ri 95.9 1.2 2.6E-05 43.0 18.3 185 69-315 175-366 (459)
150 KOG0272 U4/U6 small nuclear ri 95.9 0.82 1.8E-05 44.2 17.1 186 65-313 214-407 (459)
151 KOG0973 Histone transcription 95.9 0.34 7.4E-06 51.7 15.9 197 73-314 18-239 (942)
152 KOG0278 Serine/threonine kinas 95.8 1.3 2.7E-05 40.2 17.1 128 83-274 158-291 (334)
153 COG1520 FOG: WD40-like repeat 95.8 1.4 3.1E-05 43.0 19.5 70 138-243 65-134 (370)
154 PRK13684 Ycf48-like protein; P 95.7 2.2 4.7E-05 41.2 25.2 58 132-194 133-190 (334)
155 COG4946 Uncharacterized protei 95.6 0.54 1.2E-05 46.2 14.9 107 129-268 400-507 (668)
156 KOG1274 WD40 repeat protein [G 95.6 0.85 1.8E-05 48.2 17.3 137 135-313 101-251 (933)
157 KOG0293 WD40 repeat-containing 95.5 0.81 1.8E-05 44.2 15.6 157 65-280 266-425 (519)
158 KOG0275 Conserved WD40 repeat- 95.3 1.1 2.3E-05 41.9 15.2 164 65-280 210-378 (508)
159 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.2 4.3 9.3E-05 41.8 23.4 124 79-244 69-195 (527)
160 KOG0268 Sof1-like rRNA process 95.2 0.18 3.9E-06 47.7 10.0 185 67-280 65-259 (433)
161 KOG1539 WD repeat protein [Gen 95.1 0.45 9.7E-06 49.7 13.3 150 72-278 497-646 (910)
162 COG3490 Uncharacterized protei 95.1 1.3 2.8E-05 41.0 14.8 20 176-195 225-244 (366)
163 PLN00181 protein SPA1-RELATED; 95.1 6.3 0.00014 42.8 31.1 185 72-315 536-729 (793)
164 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.0 5.2 0.00011 41.2 26.0 17 82-98 122-138 (527)
165 PF08662 eIF2A: Eukaryotic tra 95.0 0.97 2.1E-05 39.9 13.8 120 153-313 40-162 (194)
166 KOG2321 WD40 repeat protein [G 94.8 5.1 0.00011 40.5 19.9 170 72-281 55-259 (703)
167 PF14870 PSII_BNR: Photosynthe 94.7 4.1 8.9E-05 38.6 23.7 183 70-315 18-207 (302)
168 PTZ00420 coronin; Provisional 94.6 6.7 0.00015 40.7 26.4 117 131-280 75-197 (568)
169 PF07494 Reg_prop: Two compone 94.5 0.048 1E-06 30.4 2.8 21 175-195 3-23 (24)
170 KOG4328 WD40 protein [Function 94.5 5.3 0.00011 39.2 18.2 153 72-279 238-398 (498)
171 KOG0283 WD40 repeat-containing 94.5 2.4 5.2E-05 44.3 16.7 112 131-282 370-483 (712)
172 KOG2139 WD40 repeat protein [G 94.5 4.3 9.2E-05 38.8 16.9 97 177-307 196-293 (445)
173 COG3211 PhoX Predicted phospha 94.4 0.34 7.3E-06 48.8 10.1 127 60-195 408-573 (616)
174 KOG0275 Conserved WD40 repeat- 94.4 1 2.2E-05 42.1 12.5 153 70-281 265-424 (508)
175 PF07494 Reg_prop: Two compone 94.3 0.058 1.3E-06 30.1 2.8 15 299-313 9-23 (24)
176 COG3490 Uncharacterized protei 94.3 3.6 7.7E-05 38.2 15.6 144 229-378 139-316 (366)
177 KOG0273 Beta-transducin family 94.1 6.5 0.00014 38.8 20.9 74 69-166 236-312 (524)
178 KOG0271 Notchless-like WD40 re 93.9 3.2 6.9E-05 39.9 15.0 153 70-280 117-276 (480)
179 KOG0643 Translation initiation 93.8 5.2 0.00011 36.7 17.5 185 74-317 16-213 (327)
180 KOG0646 WD40 repeat protein [G 93.8 3.6 7.8E-05 40.4 15.5 179 66-280 121-307 (476)
181 PF14583 Pectate_lyase22: Olig 93.8 1.9 4E-05 42.0 13.7 82 230-314 60-144 (386)
182 PF05694 SBP56: 56kDa selenium 93.7 5.4 0.00012 39.4 16.7 177 130-320 129-338 (461)
183 COG0823 TolB Periplasmic compo 93.6 8.5 0.00019 38.4 21.2 108 137-279 244-357 (425)
184 KOG0303 Actin-binding protein 93.6 2.3 5.1E-05 40.9 13.6 119 132-280 175-294 (472)
185 KOG0319 WD40-repeat-containing 93.6 2.5 5.4E-05 43.8 14.6 152 74-280 25-179 (775)
186 KOG0771 Prolactin regulatory e 93.5 1.6 3.5E-05 42.1 12.5 155 72-280 148-311 (398)
187 KOG0285 Pleiotropic regulator 93.4 7.5 0.00016 37.1 19.6 109 62-195 145-254 (460)
188 KOG0299 U3 snoRNP-associated p 93.2 9.2 0.0002 37.6 17.8 69 72-160 206-274 (479)
189 KOG2096 WD40 repeat protein [G 93.1 7.8 0.00017 36.5 19.7 29 70-98 88-116 (420)
190 PF00930 DPPIV_N: Dipeptidyl p 93.1 4.7 0.0001 39.1 15.7 83 230-315 260-348 (353)
191 PLN00033 photosystem II stabil 92.9 10 0.00022 37.4 25.2 83 230-315 259-348 (398)
192 PLN00033 photosystem II stabil 92.9 9.3 0.0002 37.8 17.3 63 132-195 282-346 (398)
193 KOG0292 Vesicle coat complex C 92.9 16 0.00034 39.3 21.1 70 66-159 248-320 (1202)
194 KOG0313 Microtubule binding pr 92.8 5.3 0.00012 38.3 14.6 177 66-280 191-376 (423)
195 PRK13616 lipoprotein LpqB; Pro 92.8 14 0.00031 38.6 23.5 82 229-314 429-516 (591)
196 KOG0306 WD40-repeat-containing 92.8 14 0.00031 38.7 20.8 191 70-319 375-575 (888)
197 KOG0286 G-protein beta subunit 92.5 9.1 0.0002 35.6 26.1 162 60-280 47-217 (343)
198 PRK02888 nitrous-oxide reducta 92.5 15 0.00033 38.2 21.7 54 257-313 284-339 (635)
199 PF08553 VID27: VID27 cytoplas 92.4 2.4 5.1E-05 45.4 13.1 102 143-279 543-646 (794)
200 KOG0283 WD40 repeat-containing 92.3 5.2 0.00011 41.9 15.1 153 70-281 411-577 (712)
201 KOG3881 Uncharacterized conser 92.3 2.5 5.4E-05 40.6 11.8 92 80-194 216-308 (412)
202 TIGR03118 PEPCTERM_chp_1 conse 92.3 5.6 0.00012 37.4 13.8 76 131-243 189-284 (336)
203 PF14517 Tachylectin: Tachylec 92.3 0.54 1.2E-05 42.3 7.1 124 54-195 66-196 (229)
204 KOG0640 mRNA cleavage stimulat 92.2 2.6 5.7E-05 39.3 11.6 103 72-196 176-281 (430)
205 COG3823 Glutamine cyclotransfe 92.0 5.3 0.00011 35.4 12.6 29 135-165 50-81 (262)
206 KOG0310 Conserved WD40 repeat- 91.9 10 0.00022 37.6 15.7 143 66-269 151-299 (487)
207 PF14269 Arylsulfotran_2: Aryl 91.9 8.1 0.00018 36.6 15.2 37 178-246 145-181 (299)
208 KOG0310 Conserved WD40 repeat- 91.7 15 0.00032 36.4 16.8 222 134-405 30-267 (487)
209 KOG0288 WD40 repeat protein Ti 91.4 6.3 0.00014 38.2 13.4 107 130-268 341-450 (459)
210 PF01731 Arylesterase: Arylest 91.3 1.1 2.3E-05 33.9 6.8 68 69-159 6-83 (86)
211 KOG0285 Pleiotropic regulator 91.1 15 0.00032 35.3 16.2 107 63-195 230-338 (460)
212 KOG0973 Histone transcription 91.1 6.5 0.00014 42.5 14.6 116 67-196 68-191 (942)
213 KOG0308 Conserved WD40 repeat- 90.8 8.9 0.00019 39.4 14.4 188 78-320 35-239 (735)
214 KOG4441 Proteins containing BT 90.7 23 0.00051 36.8 18.5 113 134-280 374-499 (571)
215 PHA02713 hypothetical protein; 90.7 21 0.00046 37.0 18.1 153 142-312 351-519 (557)
216 KOG2321 WD40 repeat protein [G 90.6 6.5 0.00014 39.8 13.2 161 72-280 179-343 (703)
217 KOG0646 WD40 repeat protein [G 90.1 21 0.00045 35.3 18.9 58 134-196 85-143 (476)
218 PF06433 Me-amine-dh_H: Methyl 89.9 19 0.00041 34.6 21.6 121 256-378 190-326 (342)
219 PF14339 DUF4394: Domain of un 89.4 15 0.00032 33.4 13.5 37 131-167 27-63 (236)
220 KOG2315 Predicted translation 89.4 26 0.00057 35.4 17.9 118 231-369 252-372 (566)
221 PF14870 PSII_BNR: Photosynthe 89.2 20 0.00044 33.9 23.5 141 131-315 104-253 (302)
222 KOG0292 Vesicle coat complex C 89.1 36 0.00079 36.7 20.7 153 69-282 10-167 (1202)
223 COG0823 TolB Periplasmic compo 89.0 6.7 0.00015 39.1 12.3 81 230-313 262-344 (425)
224 KOG0645 WD40 repeat protein [G 89.0 19 0.00041 33.2 17.7 108 65-195 58-169 (312)
225 KOG0296 Angio-associated migra 88.6 23 0.00051 33.9 17.2 150 72-280 68-220 (399)
226 KOG0643 Translation initiation 88.6 20 0.00043 33.0 15.7 160 59-278 41-218 (327)
227 PRK13616 lipoprotein LpqB; Pro 88.0 37 0.00081 35.5 19.9 38 246-283 492-530 (591)
228 PF14269 Arylsulfotran_2: Aryl 87.9 17 0.00036 34.5 13.7 123 134-281 147-290 (299)
229 KOG0319 WD40-repeat-containing 87.8 8.2 0.00018 40.2 12.0 152 71-279 65-221 (775)
230 PF00058 Ldl_recept_b: Low-den 87.7 2.7 5.9E-05 26.9 5.8 29 231-259 13-42 (42)
231 KOG1407 WD40 repeat protein [F 87.5 23 0.0005 32.5 18.8 101 70-196 66-167 (313)
232 KOG0650 WD40 repeat nucleolar 87.3 38 0.00082 34.8 17.9 62 252-315 524-588 (733)
233 TIGR03074 PQQ_membr_DH membran 87.2 48 0.001 35.9 22.7 23 142-164 194-216 (764)
234 KOG1036 Mitotic spindle checkp 87.2 26 0.00057 32.8 17.4 109 133-280 16-124 (323)
235 KOG0307 Vesicle coat complex C 87.0 3.4 7.3E-05 44.9 9.1 204 83-342 83-298 (1049)
236 KOG0281 Beta-TrCP (transducin 87.0 9.2 0.0002 36.4 10.9 48 231-280 341-388 (499)
237 KOG0639 Transducin-like enhanc 86.2 16 0.00034 36.6 12.4 111 135-280 470-581 (705)
238 KOG2919 Guanine nucleotide-bin 85.9 21 0.00045 33.8 12.5 144 142-323 122-280 (406)
239 KOG0284 Polyadenylation factor 85.5 14 0.00031 35.8 11.6 179 72-315 100-285 (464)
240 KOG0771 Prolactin regulatory e 85.5 21 0.00046 34.6 12.8 71 176-279 281-353 (398)
241 PF14517 Tachylectin: Tachylec 85.2 9.4 0.0002 34.5 9.7 168 57-279 23-205 (229)
242 KOG2110 Uncharacterized conser 85.1 37 0.00081 32.7 15.1 84 230-315 106-194 (391)
243 KOG4378 Nuclear protein COP1 [ 85.1 45 0.00097 33.5 17.4 83 229-314 186-270 (673)
244 KOG4378 Nuclear protein COP1 [ 85.0 39 0.00086 33.9 14.5 53 229-282 230-282 (673)
245 COG4247 Phy 3-phytase (myo-ino 85.0 31 0.00067 31.7 22.6 96 153-280 127-234 (364)
246 KOG1009 Chromatin assembly com 85.0 13 0.00028 36.1 11.0 34 65-98 120-153 (434)
247 KOG0647 mRNA export protein (c 84.9 34 0.00074 32.1 15.7 80 71-169 30-111 (347)
248 KOG1036 Mitotic spindle checkp 84.9 34 0.00074 32.1 20.6 148 69-280 14-163 (323)
249 KOG0639 Transducin-like enhanc 84.9 10 0.00022 37.9 10.5 36 63-98 546-581 (705)
250 TIGR02276 beta_rpt_yvtn 40-res 84.8 4.5 9.8E-05 25.2 5.8 30 229-258 13-42 (42)
251 PF02897 Peptidase_S9_N: Proly 84.7 43 0.00093 33.0 18.3 119 135-281 128-261 (414)
252 KOG0265 U5 snRNP-specific prot 84.1 25 0.00055 32.9 12.1 116 129-280 46-163 (338)
253 TIGR02276 beta_rpt_yvtn 40-res 83.9 6.4 0.00014 24.5 6.2 42 259-303 1-42 (42)
254 PHA03098 kelch-like protein; P 83.8 55 0.0012 33.6 17.4 77 142-246 389-472 (534)
255 KOG2110 Uncharacterized conser 83.6 40 0.00086 32.5 13.5 111 133-280 129-248 (391)
256 KOG0299 U3 snoRNP-associated p 83.5 49 0.0011 32.7 15.3 119 130-279 327-455 (479)
257 COG5276 Uncharacterized conser 83.4 40 0.00088 31.7 18.6 107 134-282 90-201 (370)
258 PF05694 SBP56: 56kDa selenium 83.3 51 0.0011 32.8 19.4 61 253-313 315-393 (461)
259 KOG2919 Guanine nucleotide-bin 82.9 31 0.00066 32.8 12.2 160 67-281 157-328 (406)
260 KOG0288 WD40 repeat protein Ti 82.9 47 0.001 32.5 13.8 87 230-320 322-413 (459)
261 smart00135 LY Low-density lipo 82.4 3.8 8.2E-05 25.6 4.7 36 63-98 3-39 (43)
262 KOG1538 Uncharacterized conser 82.3 68 0.0015 33.5 17.6 58 133-196 15-73 (1081)
263 KOG0641 WD40 repeat protein [G 82.2 37 0.00081 30.4 16.8 29 253-282 235-263 (350)
264 PF00058 Ldl_recept_b: Low-den 82.1 4.3 9.3E-05 25.9 4.7 39 263-303 2-41 (42)
265 KOG1272 WD40-repeat-containing 82.0 34 0.00073 34.0 12.6 44 55-98 114-159 (545)
266 KOG0649 WD40 repeat protein [G 81.9 32 0.0007 31.3 11.6 108 133-279 117-234 (325)
267 KOG0316 Conserved WD40 repeat- 81.4 42 0.00091 30.5 12.9 100 143-281 156-258 (307)
268 PF00930 DPPIV_N: Dipeptidyl p 81.4 23 0.00051 34.2 11.9 92 143-267 249-345 (353)
269 PF00400 WD40: WD domain, G-be 81.3 4.5 9.7E-05 24.7 4.6 33 64-96 7-39 (39)
270 PF06739 SBBP: Beta-propeller 80.9 1.4 2.9E-05 27.7 2.0 20 177-196 13-32 (38)
271 KOG0296 Angio-associated migra 80.9 55 0.0012 31.5 23.0 77 68-166 148-226 (399)
272 KOG0264 Nucleosome remodeling 80.8 33 0.00072 33.6 12.1 112 135-280 232-347 (422)
273 KOG1445 Tumor-specific antigen 80.3 8.2 0.00018 39.6 8.1 111 133-279 680-797 (1012)
274 PF08553 VID27: VID27 cytoplas 80.2 32 0.0007 37.0 13.0 79 229-314 551-638 (794)
275 KOG4441 Proteins containing BT 79.4 85 0.0018 32.8 20.6 114 134-280 326-452 (571)
276 KOG2111 Uncharacterized conser 79.3 58 0.0013 30.8 18.1 72 178-282 183-258 (346)
277 KOG3881 Uncharacterized conser 78.8 12 0.00026 36.1 8.4 89 226-316 222-312 (412)
278 KOG2395 Protein involved in va 78.6 17 0.00036 36.8 9.5 100 146-280 398-500 (644)
279 KOG1273 WD40 repeat protein [G 78.6 61 0.0013 30.7 18.0 58 133-195 26-84 (405)
280 KOG3914 WD repeat protein WDR4 78.5 48 0.001 32.2 12.3 153 70-281 64-224 (390)
281 KOG1408 WD40 repeat protein [F 78.4 26 0.00056 36.7 11.0 114 133-280 599-713 (1080)
282 KOG0308 Conserved WD40 repeat- 78.2 47 0.001 34.4 12.7 159 70-280 75-243 (735)
283 KOG2096 WD40 repeat protein [G 78.2 27 0.00059 33.0 10.2 130 51-194 259-391 (420)
284 PHA02713 hypothetical protein; 78.1 91 0.002 32.4 23.9 74 142-246 303-383 (557)
285 KOG0640 mRNA cleavage stimulat 77.5 65 0.0014 30.4 13.9 105 69-194 217-323 (430)
286 KOG0295 WD40 repeat-containing 77.5 63 0.0014 31.1 12.6 57 135-196 198-255 (406)
287 PHA03098 kelch-like protein; P 77.3 91 0.002 32.0 20.0 75 142-246 342-422 (534)
288 KOG0274 Cdc4 and related F-box 77.1 74 0.0016 32.9 14.3 147 72-280 335-482 (537)
289 PHA02790 Kelch-like protein; P 77.0 89 0.0019 31.7 20.1 129 142-313 318-454 (480)
290 KOG0284 Polyadenylation factor 76.4 28 0.00062 33.9 10.1 153 70-280 182-337 (464)
291 KOG0322 G-protein beta subunit 75.6 40 0.00088 31.1 10.4 68 178-278 253-321 (323)
292 PHA02790 Kelch-like protein; P 75.2 99 0.0021 31.4 15.6 85 142-268 362-453 (480)
293 KOG1963 WD40 repeat protein [G 74.3 80 0.0017 33.8 13.5 102 72-194 209-310 (792)
294 KOG0645 WD40 repeat protein [G 73.8 76 0.0017 29.4 23.1 118 130-280 14-135 (312)
295 KOG0641 WD40 repeat protein [G 73.6 69 0.0015 28.8 17.2 24 72-95 93-116 (350)
296 KOG0268 Sof1-like rRNA process 72.7 15 0.00033 35.2 7.3 112 130-278 229-345 (433)
297 KOG0301 Phospholipase A2-activ 72.6 1.3E+02 0.0028 31.6 19.9 25 79-103 70-94 (745)
298 KOG4547 WD40 repeat-containing 72.4 1.2E+02 0.0026 31.0 16.6 81 142-260 114-195 (541)
299 COG1770 PtrB Protease II [Amin 72.3 97 0.0021 32.5 13.4 59 231-291 156-219 (682)
300 TIGR03074 PQQ_membr_DH membran 72.1 96 0.0021 33.6 14.1 24 142-165 260-283 (764)
301 PF02897 Peptidase_S9_N: Proly 71.7 1.1E+02 0.0023 30.2 21.4 84 230-315 150-248 (414)
302 KOG0305 Anaphase promoting com 71.1 1.2E+02 0.0027 30.7 20.8 154 69-278 218-373 (484)
303 KOG1215 Low-density lipoprotei 70.7 1.7E+02 0.0038 32.2 16.7 115 132-281 481-599 (877)
304 smart00564 PQQ beta-propeller 68.6 9.5 0.00021 22.3 3.5 23 142-164 6-28 (33)
305 KOG4227 WD40 repeat protein [G 68.3 1.2E+02 0.0027 29.5 20.4 192 71-315 59-265 (609)
306 KOG1063 RNA polymerase II elon 67.7 1.7E+02 0.0036 30.8 15.6 110 66-195 265-380 (764)
307 PF05935 Arylsulfotrans: Aryls 66.9 1.5E+02 0.0033 30.1 14.6 17 178-194 272-289 (477)
308 COG5167 VID27 Protein involved 66.5 40 0.00087 34.1 9.0 50 229-280 582-632 (776)
309 KOG1445 Tumor-specific antigen 65.6 43 0.00093 34.7 9.1 120 130-280 720-844 (1012)
310 KOG0305 Anaphase promoting com 65.1 1.6E+02 0.0036 29.8 15.5 178 72-312 264-449 (484)
311 PF09826 Beta_propel: Beta pro 64.7 1.8E+02 0.0038 30.0 14.7 50 354-406 304-355 (521)
312 KOG0642 Cell-cycle nuclear pro 64.1 1.6E+02 0.0034 30.1 12.6 98 55-163 329-429 (577)
313 PF13570 PQQ_3: PQQ-like domai 63.8 30 0.00064 21.4 5.3 38 363-405 1-38 (40)
314 COG4247 Phy 3-phytase (myo-ino 63.5 1.2E+02 0.0027 27.9 20.3 83 231-313 127-224 (364)
315 KOG0306 WD40-repeat-containing 63.1 2.1E+02 0.0046 30.5 18.6 81 230-313 171-263 (888)
316 KOG1230 Protein containing rep 62.1 1.7E+02 0.0037 29.0 12.3 108 135-268 126-250 (521)
317 KOG0281 Beta-TrCP (transducin 61.8 67 0.0015 30.8 9.1 182 69-320 198-384 (499)
318 PF04053 Coatomer_WDAD: Coatom 61.2 1.9E+02 0.004 29.2 13.8 50 230-280 126-175 (443)
319 KOG4547 WD40 repeat-containing 60.8 2E+02 0.0044 29.4 13.4 85 226-312 76-162 (541)
320 KOG0294 WD40 repeat-containing 60.3 1.6E+02 0.0034 28.0 16.2 60 83-163 100-160 (362)
321 PF09910 DUF2139: Uncharacteri 58.8 1.6E+02 0.0036 27.8 25.6 41 130-170 105-149 (339)
322 PF09826 Beta_propel: Beta pro 58.2 2.3E+02 0.005 29.2 15.4 121 153-302 249-377 (521)
323 PF08309 LVIVD: LVIVD repeat; 58.1 32 0.0007 22.0 4.6 27 133-161 4-30 (42)
324 PF01011 PQQ: PQQ enzyme repea 58.0 16 0.00035 22.5 3.2 22 143-164 1-22 (38)
325 KOG1963 WD40 repeat protein [G 57.4 1.4E+02 0.003 32.0 11.4 64 72-159 255-321 (792)
326 KOG1538 Uncharacterized conser 56.5 2.7E+02 0.0058 29.5 16.0 150 72-280 136-293 (1081)
327 PF15416 DUF4623: Domain of un 54.9 1.8E+02 0.0038 28.0 10.6 58 259-316 141-204 (442)
328 KOG1188 WD40 repeat protein [G 54.6 2E+02 0.0044 27.6 11.2 51 229-280 49-102 (376)
329 smart00284 OLF Olfactomedin-li 53.7 1.8E+02 0.004 26.8 18.9 110 134-280 131-252 (255)
330 KOG4227 WD40 repeat protein [G 53.7 1.6E+02 0.0035 28.8 10.3 72 72-161 109-180 (609)
331 KOG4328 WD40 protein [Function 53.6 1.9E+02 0.0041 28.9 10.9 113 133-280 237-353 (498)
332 KOG4532 WD40-like repeat conta 52.8 2E+02 0.0043 26.8 13.2 45 272-318 138-182 (344)
333 PRK14131 N-acetylneuraminic ac 52.7 2.3E+02 0.005 27.6 15.6 51 142-195 84-147 (376)
334 KOG0276 Vesicle coat complex C 51.3 3.1E+02 0.0068 28.7 18.0 38 61-98 133-171 (794)
335 KOG0647 mRNA export protein (c 50.8 2.2E+02 0.0048 26.9 17.9 110 133-278 30-143 (347)
336 PF02191 OLF: Olfactomedin-lik 50.2 2.1E+02 0.0045 26.3 19.4 166 66-280 67-247 (250)
337 KOG0918 Selenium-binding prote 49.8 1.4E+02 0.003 29.4 9.2 20 250-269 389-408 (476)
338 KOG0301 Phospholipase A2-activ 49.1 3.5E+02 0.0075 28.6 15.7 95 71-195 143-238 (745)
339 KOG3914 WD repeat protein WDR4 48.6 1E+02 0.0023 30.0 8.3 40 240-280 142-181 (390)
340 PF11768 DUF3312: Protein of u 48.3 1.1E+02 0.0023 31.5 8.7 70 70-163 261-332 (545)
341 PRK10115 protease 2; Provision 48.1 3.8E+02 0.0082 28.7 16.0 145 179-394 129-286 (686)
342 TIGR02608 delta_60_rpt delta-6 47.5 64 0.0014 22.0 5.0 22 353-375 28-49 (55)
343 TIGR03803 Gloeo_Verruco Gloeo_ 47.4 57 0.0012 19.8 4.2 17 228-245 15-31 (34)
344 KOG0276 Vesicle coat complex C 47.3 3.6E+02 0.0078 28.3 14.2 49 230-280 444-492 (794)
345 PF04762 IKI3: IKI3 family; I 46.5 4.3E+02 0.0092 29.5 13.8 115 132-280 23-150 (928)
346 KOG0274 Cdc4 and related F-box 45.6 3.7E+02 0.0079 27.9 23.8 153 64-282 245-402 (537)
347 KOG1215 Low-density lipoprotei 45.1 4.6E+02 0.01 28.9 15.1 109 63-196 474-587 (877)
348 KOG1408 WD40 repeat protein [F 44.7 2.3E+02 0.005 30.2 10.4 71 72-164 600-675 (1080)
349 TIGR03548 mutarot_permut cycli 44.1 2.8E+02 0.0061 26.1 19.1 74 142-246 123-202 (323)
350 KOG0302 Ribosome Assembly prot 43.6 2.6E+02 0.0056 27.3 10.0 114 134-281 215-333 (440)
351 TIGR03548 mutarot_permut cycli 43.3 2.9E+02 0.0063 26.1 15.0 54 142-195 171-231 (323)
352 KOG1310 WD40 repeat protein [G 40.1 3.3E+02 0.0072 28.0 10.5 123 61-236 43-176 (758)
353 PF11763 DIPSY: Cell-wall adhe 39.1 2E+02 0.0043 23.0 10.6 19 295-313 82-100 (123)
354 KOG2111 Uncharacterized conser 39.0 2.5E+02 0.0055 26.7 9.0 74 65-160 178-256 (346)
355 COG5276 Uncharacterized conser 37.2 3.7E+02 0.008 25.5 15.3 113 131-283 129-244 (370)
356 PF07676 PD40: WD40-like Beta 36.5 99 0.0021 18.7 4.7 18 253-270 12-29 (39)
357 PF11768 DUF3312: Protein of u 35.5 1.1E+02 0.0024 31.3 6.6 53 226-280 277-329 (545)
358 PF05935 Arylsulfotrans: Aryls 35.4 4.9E+02 0.011 26.4 17.4 121 136-280 153-301 (477)
359 KOG0269 WD40 repeat-containing 35.3 6E+02 0.013 27.4 13.0 53 229-281 109-165 (839)
360 PF13964 Kelch_6: Kelch motif 35.2 77 0.0017 20.5 3.9 18 229-246 27-44 (50)
361 KOG4283 Transcription-coupled 34.3 4.1E+02 0.0089 25.2 11.8 175 69-288 102-284 (397)
362 PF14339 DUF4394: Domain of un 33.6 3.7E+02 0.0081 24.5 17.1 69 79-165 38-108 (236)
363 KOG0650 WD40 repeat nucleolar 33.0 3.7E+02 0.008 28.0 9.7 61 130-195 566-627 (733)
364 COG4222 Uncharacterized protei 32.3 5E+02 0.011 25.6 10.4 30 67-96 67-96 (391)
365 KOG2394 WD40 protein DMR-N9 [G 31.7 97 0.0021 31.5 5.4 57 178-266 292-349 (636)
366 smart00320 WD40 WD40 repeats. 31.4 85 0.0018 17.0 3.5 25 71-95 15-39 (40)
367 KOG0321 WD40 repeat-containing 31.0 6.5E+02 0.014 26.5 16.8 232 77-403 61-345 (720)
368 KOG0295 WD40 repeat-containing 29.2 5.5E+02 0.012 25.0 15.4 54 227-281 311-365 (406)
369 KOG2315 Predicted translation 28.9 6.6E+02 0.014 25.9 17.2 100 131-270 271-375 (566)
370 KOG2114 Vacuolar assembly/sort 28.9 8E+02 0.017 26.9 16.5 191 137-406 30-243 (933)
371 KOG0264 Nucleosome remodeling 27.3 3.3E+02 0.0071 27.0 8.0 53 229-281 249-304 (422)
372 KOG0269 WD40 repeat-containing 27.3 6.5E+02 0.014 27.1 10.5 68 70-160 135-207 (839)
373 PF07250 Glyoxal_oxid_N: Glyox 25.3 5.3E+02 0.012 23.6 13.8 36 155-194 49-84 (243)
374 KOG1517 Guanine nucleotide bin 25.2 1E+03 0.023 26.9 12.1 100 79-195 1220-1323(1387)
375 KOG1034 Transcriptional repres 24.6 6.4E+02 0.014 24.3 11.6 92 228-321 113-208 (385)
376 PF05131 Pep3_Vps18: Pep3/Vps1 24.2 3.4E+02 0.0074 22.7 6.8 32 130-162 74-105 (147)
377 PF10647 Gmad1: Lipoprotein Lp 24.2 5.5E+02 0.012 23.4 19.6 185 69-309 24-232 (253)
378 KOG1009 Chromatin assembly com 23.8 7.2E+02 0.016 24.6 19.5 99 131-263 66-179 (434)
379 KOG0313 Microtubule binding pr 23.4 7.1E+02 0.015 24.4 14.7 77 63-163 255-333 (423)
380 KOG2395 Protein involved in va 22.4 5.8E+02 0.012 26.3 8.8 92 83-196 397-491 (644)
381 KOG3611 Semaphorins [Signal tr 21.8 4.3E+02 0.0093 28.6 8.5 71 72-160 411-492 (737)
382 KOG1272 WD40-repeat-containing 21.8 8.4E+02 0.018 24.7 10.6 32 295-326 294-325 (545)
383 TIGR03547 muta_rot_YjhT mutatr 21.2 7.1E+02 0.015 23.6 15.4 51 142-195 63-126 (346)
384 PF05567 Neisseria_PilC: Neiss 21.0 1.8E+02 0.0039 28.0 5.2 44 153-196 182-230 (335)
385 COG3055 Uncharacterized protei 20.5 8E+02 0.017 23.9 9.5 17 230-246 196-212 (381)
386 KOG3567 Peptidylglycine alpha- 20.4 1.7E+02 0.0037 29.3 4.7 24 173-196 463-486 (501)
387 KOG0322 G-protein beta subunit 20.3 2.3E+02 0.0051 26.3 5.3 31 69-99 252-282 (323)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=3.4e-57 Score=419.63 Aligned_cols=325 Identities=53% Similarity=0.942 Sum_probs=287.5
Q ss_pred eeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEee--cCCCccccCCCCCcccccccCCcCCcceEEE
Q 015463 62 IKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFT--SNNRSELCNPKPIATSYLKNEHICGRPLGLR 137 (406)
Q Consensus 62 ~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~ 137 (406)
.+......|||++.+|+.|.--|++..+|+|.+|... +|..++.. +......|++ .....++.||||+||+
T Consensus 47 l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~-----~~~~~e~~CGRPLGl~ 121 (376)
T KOG1520|consen 47 LIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDP-----GSFETEPLCGRPLGIR 121 (376)
T ss_pred cccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCC-----cceecccccCCcceEE
Confidence 3444456788888888877667888888888888765 77777765 3333343432 1346788899999999
Q ss_pred EeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463 138 FDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL 217 (406)
Q Consensus 138 ~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~ 217 (406)
|+...|+|||||++.||+.+++++++.+.+.+..+|.++.+.|+++++++|.+||||+|++|.++++ +.+++|
T Consensus 122 f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~------~~a~l~- 194 (376)
T KOG1520|consen 122 FDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDF------VFAALE- 194 (376)
T ss_pred eccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhhe------EEeeec-
Confidence 9996669999999999999999999988888889999999999999999999999999999999999 999999
Q ss_pred CCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec-CCCC
Q 015463 218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGY 296 (406)
Q Consensus 218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-l~g~ 296 (406)
+.++||+++||+.|+.++++++++.+|||+++|+|+++++++|+...||.+||++|+++|+.|+|++ +||+
T Consensus 195 --------g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~ 266 (376)
T KOG1520|consen 195 --------GDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGY 266 (376)
T ss_pred --------CCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 9999
Q ss_pred CCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCe
Q 015463 297 PDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKV 376 (406)
Q Consensus 297 pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~ 376 (406)
||||+.+++|++||+++..++.+..++..+|+.|+++.+++........+.-++.+|.+|.+.|.+|+++++++|.+|+.
T Consensus 267 PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~ 346 (376)
T KOG1520|consen 267 PDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKV 346 (376)
T ss_pred CcceeECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCc
Confidence 99999999999999999999999999999999999999997766554444444456677888889999999999999999
Q ss_pred eeceeEEEEeCCEEEEecCCCCeEEEEeCC
Q 015463 377 VKAISEVEEKDGKLWMGSVLMPFVAVYDLS 406 (406)
Q Consensus 377 ~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~~ 406 (406)
+..++.+.|++|+||+||+.++++++++|.
T Consensus 347 ~~~~sev~E~dg~LyiGS~~~p~i~~lkl~ 376 (376)
T KOG1520|consen 347 ITLVSEVGEHDGHLYIGSLFNPYIARLKLP 376 (376)
T ss_pred eEEEEEEeecCCeEEEcccCcceeEEEecC
Confidence 999999999999999999999999999984
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.94 E-value=3.9e-25 Score=204.21 Aligned_cols=232 Identities=31% Similarity=0.502 Sum_probs=176.4
Q ss_pred cceEEEcC-CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463 71 PESMAFDP-LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (406)
Q Consensus 71 pe~i~~d~-~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va 148 (406)
||++++++ +|.++|++..+++|++++.+ ....+.. ...|.|++++..+|.|||+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~------------------------~~~~~G~~~~~~~g~l~v~ 57 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID------------------------LPGPNGMAFDRPDGRLYVA 57 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE------------------------SSSEEEEEEECTTSEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe------------------------cCCCceEEEEccCCEEEEE
Confidence 79999997 78888888999999999987 3322211 1228999999337999999
Q ss_pred eCCCcEEEEeCCCCeEEEcccccCCc-ccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463 149 DAYFGLMKVGPEGGLATSLATEAEGV-PLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227 (406)
Q Consensus 149 d~~~gl~~~d~~~~~~~~l~~~~~~~-~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 227 (406)
+. .++..+|+++++++.+.....+. ++..+|++++|++|++|+|++...... ..
T Consensus 58 ~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~------------------------~~ 112 (246)
T PF08450_consen 58 DS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS------------------------GI 112 (246)
T ss_dssp ET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT------------------------CG
T ss_pred Ec-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc------------------------cc
Confidence 86 57788899999988877664343 788999999999999999986421100 01
Q ss_pred CCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCC--CcceeeeecC---CCCCCceEE
Q 015463 228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK--AGNLEAFAIL---PGYPDNVRT 302 (406)
Q Consensus 228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~--~~~~~~~~~l---~g~pd~i~~ 302 (406)
..|+|++++++ ++.+.+..++..||||++++|++.||++++..++|++|+++.+. ....+++.+. .|.|||+++
T Consensus 113 ~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v 191 (246)
T PF08450_consen 113 DPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV 191 (246)
T ss_dssp GSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE
T ss_pred cccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE
Confidence 11789999999 88888888999999999999999999999999999999997432 3445666543 346999999
Q ss_pred CCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeeeceeE
Q 015463 303 NEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISE 382 (406)
Q Consensus 303 d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~~s~ 382 (406)
|++|+|||+.... +.|.++|++|+.+..+.-+.. .++.
T Consensus 192 D~~G~l~va~~~~--------------------------------------~~I~~~~p~G~~~~~i~~p~~----~~t~ 229 (246)
T PF08450_consen 192 DSDGNLWVADWGG--------------------------------------GRIVVFDPDGKLLREIELPVP----RPTN 229 (246)
T ss_dssp BTTS-EEEEEETT--------------------------------------TEEEEEETTSCEEEEEE-SSS----SEEE
T ss_pred cCCCCEEEEEcCC--------------------------------------CEEEEECCCccEEEEEcCCCC----CEEE
Confidence 9999999998644 138889999999998876622 3444
Q ss_pred EEE---eCCEEEEec
Q 015463 383 VEE---KDGKLWMGS 394 (406)
Q Consensus 383 ~~~---~~g~Ly~Gs 394 (406)
+.. ..++||+.+
T Consensus 230 ~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 230 CAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEESTTSSEEEEEE
T ss_pred EEEECCCCCEEEEEe
Confidence 443 347899976
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=5.8e-23 Score=192.92 Aligned_cols=200 Identities=29% Similarity=0.413 Sum_probs=146.9
Q ss_pred CcccCcceEEEcCCCC-eeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463 66 NQIQGPESMAFDPLGR-GPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT 142 (406)
Q Consensus 66 ~~~~gpe~i~~d~~g~-~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~ 142 (406)
....-.|+..++++.+ ++|++..+++|+++++. ..+.+... ...+.++.++. +
T Consensus 22 ~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p-----------------------~~~~~~~~~d~-~ 77 (307)
T COG3386 22 KGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSP-----------------------GGFSSGALIDA-G 77 (307)
T ss_pred cccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECC-----------------------CCcccceeecC-C
Confidence 3445667777776655 78999999999999986 33333221 23356777887 7
Q ss_pred CcEEEEeCCCcEEEEeCCCCeE-EEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463 143 GDLYIADAYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221 (406)
Q Consensus 143 g~L~Vad~~~gl~~~d~~~~~~-~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 221 (406)
+.|+++.. |+++++++.+.. +.+.....+.+.+.+|++.++++|.+||++.+. +. ...-+
T Consensus 78 g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----------~~~~~----- 138 (307)
T COG3386 78 GRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----------LGKSE----- 138 (307)
T ss_pred CeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----------cCccc-----
Confidence 88888764 677777665655 666666778888999999999999999999762 10 00011
Q ss_pred CCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee---CCCCcce-eeeec-CCC
Q 015463 222 PIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI---GEKAGNL-EAFAI-LPG 295 (406)
Q Consensus 222 ~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~---g~~~~~~-~~~~~-l~g 295 (406)
.+..|.||++||. ++++.+. ..+..+||||+|||++.+|+++|..++|++|+.+ +...+.. .++.+ .+|
T Consensus 139 ----~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G 213 (307)
T COG3386 139 ----ERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPG 213 (307)
T ss_pred ----cCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCC
Confidence 4556889999996 4555554 4499999999999999999999999999999987 3333331 22333 579
Q ss_pred CCCceEECCCCCEEEEEc
Q 015463 296 YPDNVRTNEKGEFWVAIH 313 (406)
Q Consensus 296 ~pd~i~~d~~G~lwv~~~ 313 (406)
.|||+++|.+|++|++..
T Consensus 214 ~PDG~~vDadG~lw~~a~ 231 (307)
T COG3386 214 LPDGMAVDADGNLWVAAV 231 (307)
T ss_pred CCCceEEeCCCCEEEecc
Confidence 999999999999997543
No 4
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.84 E-value=6.3e-21 Score=144.34 Aligned_cols=88 Identities=52% Similarity=0.891 Sum_probs=74.4
Q ss_pred cceEEcCC-CCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEe
Q 015463 180 NDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLS 258 (406)
Q Consensus 180 ~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~ 258 (406)
|+++++++ |.||||++|++|.+++| +.+++| +.++|+|++|||.|++++++++++.+||||+++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~------~~~~le---------~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals 65 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDW------VYDLLE---------GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALS 65 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGH------HHHHHH---------T---EEEEEEETTTTEEEEEEEEESSEEEEEE-
T ss_pred CceeEecCCCEEEEEeCccccCccce------eeeeec---------CCCCcCEEEEECCCCeEEEehhCCCccCeEEEc
Confidence 68999998 99999999999999999 999999 999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCCeEEEEEeeCC
Q 015463 259 KDKSFFVFCEGSVGRLHKYWLIGE 282 (406)
Q Consensus 259 ~d~~~l~v~~t~~~~i~~~~~~g~ 282 (406)
+|+++++|+|+...||+|||++|+
T Consensus 66 ~d~~~vlv~Et~~~Ri~rywl~Gp 89 (89)
T PF03088_consen 66 PDESFVLVAETGRYRILRYWLKGP 89 (89)
T ss_dssp TTSSEEEEEEGGGTEEEEEESSST
T ss_pred CCCCEEEEEeccCceEEEEEEeCC
Confidence 999999999999999999999875
No 5
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.80 E-value=1.9e-17 Score=147.02 Aligned_cols=240 Identities=16% Similarity=0.218 Sum_probs=174.0
Q ss_pred cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT 142 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~ 142 (406)
...-.+|..++.++||..+|++...|-|-++|+. +++.+... .+.+|++|.+++ +
T Consensus 58 vp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg----------------------~Ga~Phgiv~gp-d 114 (353)
T COG4257 58 VPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLG----------------------SGASPHGIVVGP-D 114 (353)
T ss_pred cCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecC----------------------CCCCCceEEECC-C
Confidence 4455689999999999988899999999999987 55555322 246799999999 8
Q ss_pred CcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463 143 GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP 222 (406)
Q Consensus 143 g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 222 (406)
|..||+|...+|.|+|+++.+++.+.-.. .......+...+|++|++||+...
T Consensus 115 g~~Witd~~~aI~R~dpkt~evt~f~lp~-~~a~~nlet~vfD~~G~lWFt~q~-------------------------- 167 (353)
T COG4257 115 GSAWITDTGLAIGRLDPKTLEVTRFPLPL-EHADANLETAVFDPWGNLWFTGQI-------------------------- 167 (353)
T ss_pred CCeeEecCcceeEEecCcccceEEeeccc-ccCCCcccceeeCCCccEEEeecc--------------------------
Confidence 99999999889999999999888765332 122335778899999999999864
Q ss_pred CcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec---CCCCCC
Q 015463 223 IKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---LPGYPD 298 (406)
Q Consensus 223 ~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~---l~g~pd 298 (406)
|---++||.++.++++- ..-..|+||+..+||+ +|+++-..+-|-+++.. .+..+++.. +..-..
T Consensus 168 -------G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiaridp~---~~~aev~p~P~~~~~gsR 236 (353)
T COG4257 168 -------GAYGRLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARIDPF---AGHAEVVPQPNALKAGSR 236 (353)
T ss_pred -------ccceecCcccCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEcccc---cCCcceecCCCccccccc
Confidence 22337899888887774 3445789999999997 78887777888888854 444455532 111133
Q ss_pred ceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeee
Q 015463 299 NVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVK 378 (406)
Q Consensus 299 ~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~ 378 (406)
.|-.|+.|++|+++... +.+.+|||.-+.-..|.-+.-+.
T Consensus 237 riwsdpig~~wittwg~--------------------------------------g~l~rfdPs~~sW~eypLPgs~a-- 276 (353)
T COG4257 237 RIWSDPIGRAWITTWGT--------------------------------------GSLHRFDPSVTSWIEYPLPGSKA-- 276 (353)
T ss_pred ccccCccCcEEEeccCC--------------------------------------ceeeEeCcccccceeeeCCCCCC--
Confidence 46679999999998654 23677888766655554443321
Q ss_pred ceeEEE-EeCCEEEEecCCCCeEEEEeC
Q 015463 379 AISEVE-EKDGKLWMGSVLMPFVAVYDL 405 (406)
Q Consensus 379 ~~s~~~-~~~g~Ly~Gs~~~~~i~~~~~ 405 (406)
...++. +..|.+|+.....+.|.|+|-
T Consensus 277 rpys~rVD~~grVW~sea~agai~rfdp 304 (353)
T COG4257 277 RPYSMRVDRHGRVWLSEADAGAIGRFDP 304 (353)
T ss_pred CcceeeeccCCcEEeeccccCceeecCc
Confidence 223333 445788888888888888773
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.71 E-value=1.7e-14 Score=156.91 Aligned_cols=265 Identities=20% Similarity=0.240 Sum_probs=171.0
Q ss_pred eccCcccCcceEEEcCC-CCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463 63 KFLNQIQGPESMAFDPL-GRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK 140 (406)
Q Consensus 63 ~~~~~~~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~ 140 (406)
+...++..|..+++|+. |+++++.+.+++|.+++.+ .+....... + ..+...+. ......++|.||++++
T Consensus 562 ~~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~-g--~~G~~dG~-----~~~a~f~~P~GIavd~ 633 (1057)
T PLN02919 562 LLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST-G--EEGLRDGS-----FEDATFNRPQGLAYNA 633 (1057)
T ss_pred cccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC-C--CcCCCCCc-----hhccccCCCcEEEEeC
Confidence 33457789999999975 6644556788999999987 333222110 0 00000000 1122367899999998
Q ss_pred CCCcEEEEeCC-CcEEEEeCCCCeEEEcccc------cC-C-----cccccccceEEcC-CCCEEEEeCCCchhhhcccc
Q 015463 141 KTGDLYIADAY-FGLMKVGPEGGLATSLATE------AE-G-----VPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQK 206 (406)
Q Consensus 141 ~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~------~~-~-----~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~ 206 (406)
+++.|||+|.. +.|.++|..++.++.+... .. + ..++.|.++++++ +|.+|++++.
T Consensus 634 ~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~---------- 703 (1057)
T PLN02919 634 KKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG---------- 703 (1057)
T ss_pred CCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC----------
Confidence 44569999987 4688899988887776431 01 1 1366889999998 7899999864
Q ss_pred ccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec---------------ccCCCcceEEEecCCCEEEEEeCCC
Q 015463 207 ENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL---------------RNLQFPNGLSLSKDKSFFVFCEGSV 271 (406)
Q Consensus 207 ~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~---------------~~~~~~ngi~l~~d~~~l~v~~t~~ 271 (406)
.++|+++|+.++.+..+. ..+..|+||++++|++.+|++++.+
T Consensus 704 ----------------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n 761 (1057)
T PLN02919 704 ----------------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES 761 (1057)
T ss_pred ----------------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC
Confidence 256777777766554432 1245789999999999999999999
Q ss_pred CeEEEEEeeCCCCc----ce-------eeeec--------CCCCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhh
Q 015463 272 GRLHKYWLIGEKAG----NL-------EAFAI--------LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHF 332 (406)
Q Consensus 272 ~~i~~~~~~g~~~~----~~-------~~~~~--------l~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~ 332 (406)
++|.++++++.... .. ..|.+ .-..|.++++|++|++||+....+
T Consensus 762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~---------------- 825 (1057)
T PLN02919 762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH---------------- 825 (1057)
T ss_pred CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCC----------------
Confidence 99999997642110 00 00100 112588999999999999986542
Q ss_pred hhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEEC------CCCC----eeeceeEEE-EeCCEEEEecCCCCeEE
Q 015463 333 LLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLED------SKGK----VVKAISEVE-EKDGKLWMGSVLMPFVA 401 (406)
Q Consensus 333 ~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~------~~g~----~~~~~s~~~-~~~g~Ly~Gs~~~~~i~ 401 (406)
.|..+|+++..+..+.. .+|. .+...+.+. ..+|+||+....++.|.
T Consensus 826 ----------------------rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 826 ----------------------KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred ----------------------EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 24455655444433221 0110 112334443 45788999988889888
Q ss_pred EEeC
Q 015463 402 VYDL 405 (406)
Q Consensus 402 ~~~~ 405 (406)
++|+
T Consensus 884 vid~ 887 (1057)
T PLN02919 884 YLDL 887 (1057)
T ss_pred EEEC
Confidence 8876
No 7
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.53 E-value=3.6e-12 Score=113.68 Aligned_cols=244 Identities=16% Similarity=0.219 Sum_probs=167.9
Q ss_pred cccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceE
Q 015463 58 QNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLG 135 (406)
Q Consensus 58 ~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g 135 (406)
-++++...+.-..|..|.+++||..+++.+.. .|.|++++ ++++|....+ +....-..
T Consensus 93 Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~-------------------~a~~nlet 152 (353)
T COG4257 93 GEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLE-------------------HADANLET 152 (353)
T ss_pred CceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccc-------------------cCCCcccc
Confidence 34556666777889999999999955555555 79999997 7777754321 11222345
Q ss_pred EEEeCCCCcEEEEeCCCcEE-EEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463 136 LRFDKKTGDLYIADAYFGLM-KVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC 214 (406)
Q Consensus 136 i~~d~~~g~L~Vad~~~gl~-~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~ 214 (406)
..||+ .|+||.... .|.+ ++||.++.++++... +...+++|++.+||.+|++...
T Consensus 153 ~vfD~-~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP----qG~gpyGi~atpdGsvwyasla------------------ 208 (353)
T COG4257 153 AVFDP-WGNLWFTGQ-IGAYGRLDPARNVISVFPAP----QGGGPYGICATPDGSVWYASLA------------------ 208 (353)
T ss_pred eeeCC-CccEEEeec-cccceecCcccCceeeeccC----CCCCCcceEECCCCcEEEEecc------------------
Confidence 67998 899999865 4444 899998888776544 2346899999999999999742
Q ss_pred ccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc---CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee
Q 015463 215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA 291 (406)
Q Consensus 215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~---~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~ 291 (406)
...|.++||.++..+++... ......+-.++.+ .+|+++....++++|+... .....+
T Consensus 209 --------------gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig-~~wittwg~g~l~rfdPs~---~sW~ey- 269 (353)
T COG4257 209 --------------GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG-RAWITTWGTGSLHRFDPSV---TSWIEY- 269 (353)
T ss_pred --------------ccceEEcccccCCcceecCCCcccccccccccCccC-cEEEeccCCceeeEeCccc---ccceee-
Confidence 24589999999876665321 1222345555555 5888888889999998652 111112
Q ss_pred cCCC---CCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEE
Q 015463 292 ILPG---YPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQV 368 (406)
Q Consensus 292 ~l~g---~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~ 368 (406)
.+|| .|+.+++|..|++|...... +.+.+||++...+.+
T Consensus 270 pLPgs~arpys~rVD~~grVW~sea~a--------------------------------------gai~rfdpeta~ftv 311 (353)
T COG4257 270 PLPGSKARPYSMRVDRHGRVWLSEADA--------------------------------------GAIGRFDPETARFTV 311 (353)
T ss_pred eCCCCCCCcceeeeccCCcEEeecccc--------------------------------------CceeecCcccceEEE
Confidence 2443 47889999999999987543 238899999998988
Q ss_pred EECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEe
Q 015463 369 LEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYD 404 (406)
Q Consensus 369 ~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~ 404 (406)
|..+.-. ...-.+-...|++|++.-.-+.+.++.
T Consensus 312 ~p~pr~n--~gn~ql~gr~ge~W~~e~gvd~lv~~r 345 (353)
T COG4257 312 LPIPRPN--SGNIQLDGRPGELWFTEAGVDALVTTR 345 (353)
T ss_pred ecCCCCC--CCceeccCCCCceeecccCcceeEEEE
Confidence 8654321 122333345789999987767666543
No 8
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.52 E-value=8.9e-13 Score=114.93 Aligned_cols=233 Identities=15% Similarity=0.122 Sum_probs=146.6
Q ss_pred ceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463 72 ESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (406)
Q Consensus 72 e~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va 148 (406)
|++.++. .+.++|+....|.|.|+|-. ++.......+. ..- ...+..++|. .+++
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~-~ag-----------~ilpv~~~~q----------~~~v 75 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP-SAG-----------FILPVEGGPQ----------EFAV 75 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCc-cee-----------EEEEecCCCc----------eEEE
Confidence 5666663 46689999999999999865 22211111000 000 0011122232 3333
Q ss_pred eCCC--cEEEEeCCCCeEEEccc---ccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463 149 DAYF--GLMKVGPEGGLATSLAT---EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI 223 (406)
Q Consensus 149 d~~~--gl~~~d~~~~~~~~l~~---~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 223 (406)
..+. +|..+|-.......+.+ ..+....+..|+--+|++|+.|.++.+. .-+.+|
T Consensus 76 ~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad-------------~~~~le------- 135 (310)
T KOG4499|consen 76 GCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMAD-------------FGDDLE------- 135 (310)
T ss_pred eecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeecc-------------cccccc-------
Confidence 3332 34444422222222222 2233345678899999999999988541 112222
Q ss_pred cccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeE--EEEEeeCCCCcceeeeecC-------C
Q 015463 224 KITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRL--HKYWLIGEKAGNLEAFAIL-------P 294 (406)
Q Consensus 224 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i--~~~~~~g~~~~~~~~~~~l-------~ 294 (406)
.-.|.|+++- ..++++.+...+..+||++++.|.+..|+.++.+..| |.|+..+....+.+++.++ +
T Consensus 136 ---~~~g~Ly~~~-~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~ 211 (310)
T KOG4499|consen 136 ---PIGGELYSWL-AGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES 211 (310)
T ss_pred ---ccccEEEEec-cCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC
Confidence 1134455554 4588998888899999999999999999999999999 5555665544444443332 3
Q ss_pred CCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceE
Q 015463 295 GYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHA 354 (406)
Q Consensus 295 g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 354 (406)
-.|||+++|.+|+|||++.++..++. -+|..++++..+..|......+.++|+...
T Consensus 212 ~~PDGm~ID~eG~L~Va~~ng~~V~~----~dp~tGK~L~eiklPt~qitsccFgGkn~d 267 (310)
T KOG4499|consen 212 LEPDGMTIDTEGNLYVATFNGGTVQK----VDPTTGKILLEIKLPTPQITSCCFGGKNLD 267 (310)
T ss_pred CCCCcceEccCCcEEEEEecCcEEEE----ECCCCCcEEEEEEcCCCceEEEEecCCCcc
Confidence 46999999999999999988765532 378889988888777777788888877544
No 9
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.43 E-value=3.9e-11 Score=130.92 Aligned_cols=209 Identities=15% Similarity=0.203 Sum_probs=139.8
Q ss_pred cccCcceEEEcCCCCeeEE-EecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463 67 QIQGPESMAFDPLGRGPYT-GVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG 143 (406)
Q Consensus 67 ~~~gpe~i~~d~~g~~ly~-g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g 143 (406)
.+..|.+|+++++|+.+|+ .+.+++|.+++.. .++.++..+........+ ........+.|.+++++++++
T Consensus 622 ~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg------~~~~~~~ln~P~gVa~dp~~g 695 (1057)
T PLN02919 622 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGG------KKGTSQVLNSPWDVCFEPVNE 695 (1057)
T ss_pred ccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCC------hhhhHhhcCCCeEEEEecCCC
Confidence 3567999999998876666 5667889999875 444454321100000000 000111246799999998678
Q ss_pred cEEEEeCC-CcEEEEeCCCCeEEEcccc-----cC-----CcccccccceEEcCCCC-EEEEeCCCchhhhccccccccc
Q 015463 144 DLYIADAY-FGLMKVGPEGGLATSLATE-----AE-----GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPL 211 (406)
Q Consensus 144 ~L~Vad~~-~gl~~~d~~~~~~~~l~~~-----~~-----~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~ 211 (406)
.|||++.. +.|+++|+.++.+..+... .. ...+..|++|+++++|. ||++++.
T Consensus 696 ~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--------------- 760 (1057)
T PLN02919 696 KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--------------- 760 (1057)
T ss_pred eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC---------------
Confidence 99999986 5799999988876554321 01 12356799999999986 9999864
Q ss_pred cccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecc----------------------cCCCcceEEEecCCCEEEEEeC
Q 015463 212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR----------------------NLQFPNGLSLSKDKSFFVFCEG 269 (406)
Q Consensus 212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~----------------------~~~~~ngi~l~~d~~~l~v~~t 269 (406)
+++|.+||++++....+.. .+..|.|+++++|++ +||+++
T Consensus 761 -----------------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs 822 (1057)
T PLN02919 761 -----------------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADS 822 (1057)
T ss_pred -----------------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEEC
Confidence 3678888887665433210 134688999999986 899999
Q ss_pred CCCeEEEEEeeCCCCcceeeeec--------------CCCCCCceEECCCCCEEEEEccCCc
Q 015463 270 SVGRLHKYWLIGEKAGNLEAFAI--------------LPGYPDNVRTNEKGEFWVAIHCRRS 317 (406)
Q Consensus 270 ~~~~i~~~~~~g~~~~~~~~~~~--------------l~g~pd~i~~d~~G~lwv~~~~~~~ 317 (406)
.+++|.+++.++... ..+.. .-..|.++++|++|++||+....+.
T Consensus 823 ~N~rIrviD~~tg~v---~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 823 YNHKIKKLDPATKRV---TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred CCCEEEEEECCCCeE---EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 999999999764311 11110 0125889999999999999755443
No 10
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.39 E-value=8.6e-11 Score=108.41 Aligned_cols=137 Identities=24% Similarity=0.385 Sum_probs=101.1
Q ss_pred ceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEc-CCCCEEEEeCCCchhhhcccccccc
Q 015463 133 PLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID-DEGNVYFTDSSTNYQRRQMQKENIP 210 (406)
Q Consensus 133 p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d-~dG~ly~t~~~~~~~~~~~~~~~~~ 210 (406)
|-|.++++.+|+||+.|.. +.|+++++++++.+.+.. ..+++++++ ++|.+|+++.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-------~~~~G~~~~~~~g~l~v~~~--------------- 59 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-------PGPNGMAFDRPDGRLYVADS--------------- 59 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-------SSEEEEEEECTTSEEEEEET---------------
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-------CCCceEEEEccCCEEEEEEc---------------
Confidence 3477888768999999976 569999999987665322 127889998 7899999985
Q ss_pred ccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecc------cCCCcceEEEecCCCEEEEEeCCC--------CeEEE
Q 015463 211 LQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR------NLQFPNGLSLSKDKSFFVFCEGSV--------GRLHK 276 (406)
Q Consensus 211 ~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~------~~~~~ngi~l~~d~~~l~v~~t~~--------~~i~~ 276 (406)
+++..+|+++++++.+.. ....+|.+++++||+ +|+++... ++|++
T Consensus 60 -------------------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 60 -------------------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp -------------------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEE
T ss_pred -------------------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEE
Confidence 346677999998877653 356789999999997 88987654 56888
Q ss_pred EEeeCCCCcceeeeecCCCCCCceEECCCCC-EEEEEccC
Q 015463 277 YWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCR 315 (406)
Q Consensus 277 ~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~-lwv~~~~~ 315 (406)
++.+ ++.+...+.-..|++|+++++|+ ||++....
T Consensus 120 ~~~~----~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 120 IDPD----GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETT----SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ECCC----CeEEEEecCcccccceEECCcchheeeccccc
Confidence 8854 23334443335699999999997 78876544
No 11
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.22 E-value=1e-09 Score=107.18 Aligned_cols=171 Identities=22% Similarity=0.326 Sum_probs=112.7
Q ss_pred cccCcceEEEcCCCCeeEEEec------------CC-EEEEEeCC-------ceeEEEeecCCCccccCCCCCccccccc
Q 015463 67 QIQGPESMAFDPLGRGPYTGVA------------DG-RILFWDGL-------KWTDFAFTSNNRSELCNPKPIATSYLKN 126 (406)
Q Consensus 67 ~~~gpe~i~~d~~g~~ly~g~~------------~g-~I~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (406)
.+..|..|++|++|+ +|++.. .+ +|++++.. +++.|+.
T Consensus 12 ~~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--------------------- 69 (367)
T TIGR02604 12 LLRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--------------------- 69 (367)
T ss_pred ccCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec---------------------
Confidence 578999999999999 787742 23 88888642 1222221
Q ss_pred CCcCCcceEEEEeCCCCcEEEEeCCCcEEEE-eCCC-----CeEEEcccccCCc---ccccccceEEcCCCCEEEEeCCC
Q 015463 127 EHICGRPLGLRFDKKTGDLYIADAYFGLMKV-GPEG-----GLATSLATEAEGV---PLRFTNDLDIDDEGNVYFTDSST 197 (406)
Q Consensus 127 ~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~-d~~~-----~~~~~l~~~~~~~---~~~~~~~l~~d~dG~ly~t~~~~ 197 (406)
....|.||++.+ +| |||++. ..|+++ +.++ ++.+.+.+..... ....++++++++||+||++..+.
T Consensus 70 --~l~~p~Gi~~~~-~G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~ 144 (367)
T TIGR02604 70 --ELSMVTGLAVAV-GG-VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNT 144 (367)
T ss_pred --CCCCccceeEec-CC-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccC
Confidence 135689999987 67 999875 468888 4432 1344444433322 34568999999999999988642
Q ss_pred chhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 015463 198 NYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY 277 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~ 277 (406)
.... ....+ .. ........|++++++|++++++.+..++.+++|++++++++ +|+++.......++
T Consensus 145 ~~~~--~~~~~--~~---------~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i 210 (367)
T TIGR02604 145 LASK--VTRPG--TS---------DESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRV 210 (367)
T ss_pred CCce--eccCC--Cc---------cCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEE
Confidence 1100 00000 00 00002234789999999999999999999999999999886 57877655444444
Q ss_pred E
Q 015463 278 W 278 (406)
Q Consensus 278 ~ 278 (406)
+
T Consensus 211 ~ 211 (367)
T TIGR02604 211 T 211 (367)
T ss_pred c
Confidence 3
No 12
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.21 E-value=3.6e-08 Score=94.94 Aligned_cols=191 Identities=15% Similarity=0.173 Sum_probs=115.6
Q ss_pred cCcceEEEcCCCCeeEEEec-CCEEEEEeC--C-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463 69 QGPESMAFDPLGRGPYTGVA-DGRILFWDG--L-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (406)
Q Consensus 69 ~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~ 144 (406)
.+|..++++++|+.||++.. +++|..|+. + .++..... ...+.|.++++++++..
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~---------------------~~~~~p~~i~~~~~g~~ 93 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES---------------------PLPGSPTHISTDHQGRF 93 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee---------------------cCCCCceEEEECCCCCE
Confidence 47899999999998898764 566755542 2 22222110 11345889999994445
Q ss_pred EEEEeCC-CcEEEEeCCC-CeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCC
Q 015463 145 LYIADAY-FGLMKVGPEG-GLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221 (406)
Q Consensus 145 L~Vad~~-~gl~~~d~~~-~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 221 (406)
||++... +.|..++.+. +..........+ ...|..++++++|+ +|+++..
T Consensus 94 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~------------------------- 146 (330)
T PRK11028 94 LFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLK------------------------- 146 (330)
T ss_pred EEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCC-------------------------
Confidence 8888754 4566676542 211111111111 23477888999985 6666542
Q ss_pred CCcccCCCCeEEEEeCCC-CeEEE------ecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCC
Q 015463 222 PIKITKDTGRVLKYDPTT-KQTTV------LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP 294 (406)
Q Consensus 222 ~~~~~~~~g~l~~~d~~t-~~~~~------~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~ 294 (406)
.+.|..||.++ +.+.. -......|.++++++|++++|++....+.|..|+++.. .+..+....+.
T Consensus 147 -------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~ 218 (330)
T PRK11028 147 -------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLD 218 (330)
T ss_pred -------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEe
Confidence 35677777654 33221 11123567899999999999999887899999998631 22222222211
Q ss_pred ---------CCCCceEECCCCC-EEEEEccC
Q 015463 295 ---------GYPDNVRTNEKGE-FWVAIHCR 315 (406)
Q Consensus 295 ---------g~pd~i~~d~~G~-lwv~~~~~ 315 (406)
..+..+.++++|+ +|++....
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~ 249 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTA 249 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCC
Confidence 1233578899998 77775433
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.13 E-value=1.2e-07 Score=92.01 Aligned_cols=207 Identities=19% Similarity=0.217 Sum_probs=123.8
Q ss_pred ccccccceeccCcccCcceEEEcCCCCeeEEEec----CCEEEEE--eCC--ceeEEEeecCCCccccCCCCCccccccc
Q 015463 55 NLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVA----DGRILFW--DGL--KWTDFAFTSNNRSELCNPKPIATSYLKN 126 (406)
Q Consensus 55 ~~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~----~g~I~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (406)
..|....... ....|..++++++++.||+... +|+|..+ +.+ .++.+....
T Consensus 25 g~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~------------------- 83 (345)
T PF10282_consen 25 GTLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP------------------- 83 (345)
T ss_dssp TEEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-------------------
T ss_pred CCceEeeeec--CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-------------------
Confidence 3444444322 4578999999999999999876 4577544 443 333332211
Q ss_pred CCcCCcceEEEEeCCCCcEEEEeCCCc-EEEEeCCC-CeEEEcccc-------c--CCcccccccceEEcCCCC-EEEEe
Q 015463 127 EHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEG-GLATSLATE-------A--EGVPLRFTNDLDIDDEGN-VYFTD 194 (406)
Q Consensus 127 ~~~~~~p~gi~~d~~~g~L~Vad~~~g-l~~~d~~~-~~~~~l~~~-------~--~~~~~~~~~~l~~d~dG~-ly~t~ 194 (406)
..+..|-.+++++++..||++....| +..++.+. +.+...... . .......+..+.+++||+ +|+++
T Consensus 84 -~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 84 -SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp -ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred -cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 12456788999986667899987644 54444432 443322110 0 011234678899999985 77777
Q ss_pred CCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCC--CCeEEE----ecccCCCcceEEEecCCCEEEEEe
Q 015463 195 SSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT--TKQTTV----LLRNLQFPNGLSLSKDKSFFVFCE 268 (406)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~--t~~~~~----~~~~~~~~ngi~l~~d~~~l~v~~ 268 (406)
.. ..+|+.|+.+ ++++.. -......|..+++++|++.+|++.
T Consensus 163 lG--------------------------------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 163 LG--------------------------------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp TT--------------------------------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred cC--------------------------------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec
Confidence 53 2456555554 333433 124446688899999999999999
Q ss_pred CCCCeEEEEEeeCCCCcceeee---ecCC----C--CCCceEECCCCC-EEEEEccCC
Q 015463 269 GSVGRLHKYWLIGEKAGNLEAF---AILP----G--YPDNVRTNEKGE-FWVAIHCRR 316 (406)
Q Consensus 269 t~~~~i~~~~~~g~~~~~~~~~---~~l~----g--~pd~i~~d~~G~-lwv~~~~~~ 316 (406)
...+.|..|++... .+..+.. ..++ + .|..|++++||+ +||+.....
T Consensus 211 e~s~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~ 267 (345)
T PF10282_consen 211 ELSNTVSVFDYDPS-DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN 267 (345)
T ss_dssp TTTTEEEEEEEETT-TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred CCCCcEEEEeeccc-CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence 88899999988722 2222222 1221 1 356789999998 788876543
No 14
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.11 E-value=6.4e-08 Score=93.88 Aligned_cols=216 Identities=17% Similarity=0.207 Sum_probs=126.0
Q ss_pred cccccceeccCcccCcceEEEcCCCCeeEEEec-CCEEEEEe--CC-ceeEEEeecCCCccccCCCCCcccccccCCcCC
Q 015463 56 LLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVA-DGRILFWD--GL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICG 131 (406)
Q Consensus 56 ~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~-~g~I~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (406)
.|........ .-..|-.++++++|+.+|++.+ +|.|..++ .+ .............. .+ ........
T Consensus 75 ~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~--g~-------~~~rq~~~ 144 (345)
T PF10282_consen 75 TLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS--GP-------NPDRQEGP 144 (345)
T ss_dssp EEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE--ES-------STTTTSST
T ss_pred eeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC--CC-------cccccccc
Confidence 3444443332 3358899999999998999875 57775554 33 22222110000000 00 00112246
Q ss_pred cceEEEEeCCCCcEEEEeCC-CcEEEEeCCC--CeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccc
Q 015463 132 RPLGLRFDKKTGDLYIADAY-FGLMKVGPEG--GLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKE 207 (406)
Q Consensus 132 ~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~--~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~ 207 (406)
.|+.+.+++++..+||+|.+ ..|+.++.+. +++..... ..-.+...|..++++++| .+|+...-
T Consensus 145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~-~~~~~G~GPRh~~f~pdg~~~Yv~~e~----------- 212 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS-IKVPPGSGPRHLAFSPDGKYAYVVNEL----------- 212 (345)
T ss_dssp CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE-EECSTTSSEEEEEE-TTSSEEEEEETT-----------
T ss_pred cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec-cccccCCCCcEEEEcCCcCEEEEecCC-----------
Confidence 68999999954569999876 4566666544 33443211 112234578999999998 57777632
Q ss_pred cccccccccCCCCCCCcccCCCCe--EEEEeCCCCeEEEec------c---cCCCcceEEEecCCCEEEEEeCCCCeEEE
Q 015463 208 NIPLQLCSSLNDPSPIKITKDTGR--VLKYDPTTKQTTVLL------R---NLQFPNGLSLSKDKSFFVFCEGSVGRLHK 276 (406)
Q Consensus 208 ~~~~~~~~e~~~~~~~~~~~~~g~--l~~~d~~t~~~~~~~------~---~~~~~ngi~l~~d~~~l~v~~t~~~~i~~ 276 (406)
.+. ++.++..++.++... . +...+.+|+++||+++||++....+.|..
T Consensus 213 ---------------------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 213 ---------------------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp ---------------------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred ---------------------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 233 455554467655432 1 11256789999999999999999999999
Q ss_pred EEeeCCCCcceeeee--c-CCCCCCceEECCCCC-EEEEEccC
Q 015463 277 YWLIGEKAGNLEAFA--I-LPGYPDNVRTNEKGE-FWVAIHCR 315 (406)
Q Consensus 277 ~~~~g~~~~~~~~~~--~-l~g~pd~i~~d~~G~-lwv~~~~~ 315 (406)
|.++.. .+..+... . ....|.+++++++|+ +||+....
T Consensus 272 f~~d~~-~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 272 FDLDPA-TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp EEECTT-TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred EEEecC-CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence 999632 23333322 1 233599999999999 67766543
No 15
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.08 E-value=3.5e-09 Score=103.33 Aligned_cols=147 Identities=20% Similarity=0.246 Sum_probs=91.5
Q ss_pred cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463 71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (406)
Q Consensus 71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~ 150 (406)
-..+.+|.+|+ +|+|+.+| +++++..+-+-+...+. +..-+...+..|. +|+|||++.
T Consensus 167 V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~-------------------~~dk~I~al~~d~-qg~LWVGTd 224 (671)
T COG3292 167 VVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASP-------------------PLDKAINALIADV-QGRLWVGTD 224 (671)
T ss_pred ceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCC-------------------cchhhHHHHHHHh-cCcEEEEec
Confidence 35678888888 99999987 99998762111111110 0001233456676 899999985
Q ss_pred CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463 151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG 230 (406)
Q Consensus 151 ~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g 230 (406)
.|+++.++++.++.. .....+...+.-+..|.+|++|+++..
T Consensus 225 -qGv~~~e~~G~~~sn---~~~~lp~~~I~ll~qD~qG~lWiGTen---------------------------------- 266 (671)
T COG3292 225 -QGVYLQEAEGWRASN---WGPMLPSGNILLLVQDAQGELWIGTEN---------------------------------- 266 (671)
T ss_pred -cceEEEchhhccccc---cCCCCcchheeeeecccCCCEEEeecc----------------------------------
Confidence 699999998744332 222334455677888999999999853
Q ss_pred eEEEEeCCCCeEEEec----ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 231 RVLKYDPTTKQTTVLL----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 231 ~l~~~d~~t~~~~~~~----~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
++.++....+.+.... .+....|++.++.|++ +|+. + .+++++|...
T Consensus 267 Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~-t-~~giv~~~~a 317 (671)
T COG3292 267 GLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVG-T-YGGIVRYLTA 317 (671)
T ss_pred cceeEecCCCCccccccccCCccccccceeeccCCC-Eeee-c-cCceEEEecc
Confidence 3666655544433221 1223346677777775 6554 3 4678887654
No 16
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.06 E-value=3.4e-08 Score=92.89 Aligned_cols=190 Identities=20% Similarity=0.234 Sum_probs=120.0
Q ss_pred ceEEEEeCCCCcEEEEeCCC-------------cEEEEeCCCCeEEEccc-cc-CCcccccccceEEcCC------CCEE
Q 015463 133 PLGLRFDKKTGDLYIADAYF-------------GLMKVGPEGGLATSLAT-EA-EGVPLRFTNDLDIDDE------GNVY 191 (406)
Q Consensus 133 p~gi~~d~~~g~L~Vad~~~-------------gl~~~d~~~~~~~~l~~-~~-~~~~~~~~~~l~~d~d------G~ly 191 (406)
++++.+|. .|+|||-|.+. .|+.+|..++++..... .. .-.+..+.+++++|.. +.+|
T Consensus 3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 56889998 89999999762 49999999987533211 11 1124568899999872 5799
Q ss_pred EEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCC--------------------
Q 015463 192 FTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF-------------------- 251 (406)
Q Consensus 192 ~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~-------------------- 251 (406)
++|++ .++|+.||..+++...+.+....
T Consensus 82 ItD~~--------------------------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg 129 (287)
T PF03022_consen 82 ITDSG--------------------------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDG 129 (287)
T ss_dssp EEETT--------------------------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTS
T ss_pred EeCCC--------------------------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCC
Confidence 99975 24799999999887766433211
Q ss_pred cceEEEec---CCCEEEEEeCCCCeEEEEEeeC---CCCc-------ceeeeecCCCCCCceEECCCCCEEEEEccCCcc
Q 015463 252 PNGLSLSK---DKSFFVFCEGSVGRLHKYWLIG---EKAG-------NLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSL 318 (406)
Q Consensus 252 ~ngi~l~~---d~~~l~v~~t~~~~i~~~~~~g---~~~~-------~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~~~~ 318 (406)
..|+++++ |++.||+.-..+.+++++..+- +... ..+.+.+.++..+++++|++|++|.+....
T Consensus 130 ~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~--- 206 (287)
T PF03022_consen 130 IFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQ--- 206 (287)
T ss_dssp EEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCC---
T ss_pred ccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCC---
Confidence 34678876 8889999988778898887541 1111 122333333456899999999999998654
Q ss_pred hhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCC-----CEEEEEECCCCCeeeceeEEEEe---CCEE
Q 015463 319 YSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG-----KILQVLEDSKGKVVKAISEVEEK---DGKL 390 (406)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g-----~~~~~~~~~~g~~~~~~s~~~~~---~g~L 390 (406)
..|.+.++++ +.-...+++... ....++... +|+|
T Consensus 207 -----------------------------------~aI~~w~~~~~~~~~~~~~l~~d~~~l--~~pd~~~i~~~~~g~L 249 (287)
T PF03022_consen 207 -----------------------------------NAIGCWDPDGPYTPENFEILAQDPRTL--QWPDGLKIDPEGDGYL 249 (287)
T ss_dssp -----------------------------------TEEEEEETTTSB-GCCEEEEEE-CC-G--SSEEEEEE-T--TS-E
T ss_pred -----------------------------------CeEEEEeCCCCcCccchheeEEcCcee--eccceeeeccccCceE
Confidence 2377888887 444455555432 244555443 5999
Q ss_pred EEecC
Q 015463 391 WMGSV 395 (406)
Q Consensus 391 y~Gs~ 395 (406)
|+-+-
T Consensus 250 ~v~sn 254 (287)
T PF03022_consen 250 WVLSN 254 (287)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 99774
No 17
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=2.2e-07 Score=86.35 Aligned_cols=214 Identities=16% Similarity=0.176 Sum_probs=131.8
Q ss_pred ccccccceeccCcccCcceEEEcCCCCeeEEEecCC-EEEEEeC--C-ceeE----EEeecCCCccccCCCCCccccccc
Q 015463 55 NLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADG-RILFWDG--L-KWTD----FAFTSNNRSELCNPKPIATSYLKN 126 (406)
Q Consensus 55 ~~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g-~I~~~~~--~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 126 (406)
++|+...+... ....|-.+++|++|+.+|++.+.. .|.++.. + .... +.....+ + ..
T Consensus 76 G~Lt~ln~~~~-~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~-p-------------~~ 140 (346)
T COG2706 76 GRLTFLNRQTL-PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSG-P-------------HE 140 (346)
T ss_pred CeEEEeecccc-CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCC-C-------------Cc
Confidence 34544433322 235678999999999889887764 4444332 2 1111 1111110 0 00
Q ss_pred CCcCCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcc
Q 015463 127 EHICGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQM 204 (406)
Q Consensus 127 ~~~~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~ 204 (406)
+.....++...+++++..|++.|-+ ..|+.|+.+.|+++..... .-.+...|..|++.++|. .|+..
T Consensus 141 rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~-~v~~G~GPRHi~FHpn~k~aY~v~---------- 209 (346)
T COG2706 141 RQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA-EVKPGAGPRHIVFHPNGKYAYLVN---------- 209 (346)
T ss_pred cccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc-ccCCCCCcceEEEcCCCcEEEEEe----------
Confidence 0011225667788844467888766 5788887777765543221 224556799999999996 45543
Q ss_pred ccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec------ccCCC---cceEEEecCCCEEEEEeCCCCeEE
Q 015463 205 QKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL------RNLQF---PNGLSLSKDKSFFVFCEGSVGRLH 275 (406)
Q Consensus 205 ~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~------~~~~~---~ngi~l~~d~~~l~v~~t~~~~i~ 275 (406)
| ...+=-++.||+..++++.+. +.+.. ...|.+++||++||+++.+.+.|+
T Consensus 210 -----------E---------L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 210 -----------E---------LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred -----------c---------cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 1 111223778888878887663 22222 335789999999999999989999
Q ss_pred EEEeeCCCCcceeeee--cCCCC-CCceEECCCCCEEEEEccC
Q 015463 276 KYWLIGEKAGNLEAFA--ILPGY-PDNVRTNEKGEFWVAIHCR 315 (406)
Q Consensus 276 ~~~~~g~~~~~~~~~~--~l~g~-pd~i~~d~~G~lwv~~~~~ 315 (406)
.|.++ +..+..+.+. ...|. |....+++.|++.++.+..
T Consensus 270 ~f~V~-~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 270 VFSVD-PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred EEEEc-CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence 99887 3334444433 23454 9999999999988887654
No 18
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.01 E-value=8.4e-08 Score=92.34 Aligned_cols=169 Identities=21% Similarity=0.244 Sum_probs=103.3
Q ss_pred ccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ce-eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC---C
Q 015463 68 IQGPESMAFDPLGRGPYTGVADGRILFWDGL-KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK---T 142 (406)
Q Consensus 68 ~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~---~ 142 (406)
+..|.+|++.++|+ +|++...|+|++++.+ .. ..+.... . .........+||+++++ +
T Consensus 1 L~~P~~~a~~pdG~-l~v~e~~G~i~~~~~~g~~~~~v~~~~-~---------------v~~~~~~gllgia~~p~f~~n 63 (331)
T PF07995_consen 1 LNNPRSMAFLPDGR-LLVAERSGRIWVVDKDGSLKTPVADLP-E---------------VFADGERGLLGIAFHPDFASN 63 (331)
T ss_dssp ESSEEEEEEETTSC-EEEEETTTEEEEEETTTEECEEEEE-T-T---------------TBTSTTBSEEEEEE-TTCCCC
T ss_pred CCCceEEEEeCCCc-EEEEeCCceEEEEeCCCcCcceecccc-c---------------ccccccCCcccceeccccCCC
Confidence 35799999999998 7888889999999955 32 3333321 1 01112345799999982 4
Q ss_pred CcEEEEeCC---------CcEEEEeCCCC--e---EEEcccccC--CcccccccceEEcCCCCEEEEeCCCchhhhcccc
Q 015463 143 GDLYIADAY---------FGLMKVGPEGG--L---ATSLATEAE--GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQK 206 (406)
Q Consensus 143 g~L~Vad~~---------~gl~~~d~~~~--~---~~~l~~~~~--~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~ 206 (406)
+.|||+... ..|.|+..+.+ . .+.+..... .........|++++||.||++..+.... +.
T Consensus 64 ~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~--~~-- 139 (331)
T PF07995_consen 64 GYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND--DN-- 139 (331)
T ss_dssp -EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG--GG--
T ss_pred CEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc--cc--
Confidence 889998763 25777765544 2 122222111 1234556679999999999997542110 00
Q ss_pred ccccccccccCCCCCCCcccCCCCeEEEEeCCCC-------------eEEEecccCCCcceEEEecCCCEEEEEeCCCC
Q 015463 207 ENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK-------------QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG 272 (406)
Q Consensus 207 ~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~-------------~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~ 272 (406)
.++. ....|.++|++++.. ..+.+..++.++.++++++....+|+++.+..
T Consensus 140 ----~~~~-----------~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~ 203 (331)
T PF07995_consen 140 ----AQDP-----------NSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPD 203 (331)
T ss_dssp ----GCST-----------TSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SS
T ss_pred ----cccc-----------ccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCC
Confidence 1111 233588999998754 34677889999999999998557888886543
No 19
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=7.5e-08 Score=90.97 Aligned_cols=151 Identities=18% Similarity=0.238 Sum_probs=98.3
Q ss_pred cccCcceEEEcCCCCeeEEEecC------------CEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcc
Q 015463 67 QIQGPESMAFDPLGRGPYTGVAD------------GRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP 133 (406)
Q Consensus 67 ~~~gpe~i~~d~~g~~ly~g~~~------------g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 133 (406)
....|.+..++++|+ +|+++.. |.+||+++. +.+..... ....|
T Consensus 109 ~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~----------------------~~~~~ 165 (307)
T COG3386 109 PLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD----------------------DLTIP 165 (307)
T ss_pred CcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC----------------------cEEec
Confidence 446788999999999 8888665 568999865 33333211 02458
Q ss_pred eEEEEeCCCCcEEEEeCC-CcEEEEeCCC--CeEEEcc-cccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccc
Q 015463 134 LGLRFDKKTGDLYIADAY-FGLMKVGPEG--GLATSLA-TEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENI 209 (406)
Q Consensus 134 ~gi~~d~~~g~L~Vad~~-~gl~~~d~~~--~~~~~l~-~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~ 209 (406)
+||++++++..||++|+. +.|++++.+- +.+..-. .......-..|.++++|.+|++|++...
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~------------- 232 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW------------- 232 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc-------------
Confidence 999999955589999997 6799987652 2111000 0000112246889999999999974321
Q ss_pred cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEe-cCCCEEEEEeCCC
Q 015463 210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLS-KDKSFFVFCEGSV 271 (406)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~-~d~~~l~v~~t~~ 271 (406)
..++|.+|+|+.+....+.-....+..+++. ++.+.|||+....
T Consensus 233 ------------------~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 233 ------------------GGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ------------------CCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 1248999999955555544333455556554 5788999987654
No 20
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.91 E-value=1.2e-06 Score=84.46 Aligned_cols=191 Identities=9% Similarity=0.046 Sum_probs=114.6
Q ss_pred CcceEEEcCCCCeeEEEec-CCEEEEEeCC--c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463 70 GPESMAFDPLGRGPYTGVA-DGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L 145 (406)
.|..++++++|+.+|++.. ++.|..++.+ + ....... . .....|++++++++...+
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-------------------~-~~~~~~~~~~~~p~g~~l 140 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI-------------------I-EGLEGCHSANIDPDNRTL 140 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee-------------------c-cCCCcccEeEeCCCCCEE
Confidence 6899999999998888765 6777766543 1 1110000 0 012347889999944568
Q ss_pred EEEeCC-CcEEEEeCCC-CeEEEcc-cccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCC
Q 015463 146 YIADAY-FGLMKVGPEG-GLATSLA-TEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221 (406)
Q Consensus 146 ~Vad~~-~gl~~~d~~~-~~~~~l~-~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 221 (406)
|+++.. +.|..+|.++ +.+.... ..........|.+++++++|+ +|+++..
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~------------------------- 195 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL------------------------- 195 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-------------------------
Confidence 888876 5577887754 3322110 000111234588999999985 6676532
Q ss_pred CCcccCCCCeEEEEeCC--CCeEEEecc---------cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeee
Q 015463 222 PIKITKDTGRVLKYDPT--TKQTTVLLR---------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF 290 (406)
Q Consensus 222 ~~~~~~~~g~l~~~d~~--t~~~~~~~~---------~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~ 290 (406)
.+.|..|+.+ +++.+.... +...+.+++++||++++|+++...+.|..++++.. .+..+..
T Consensus 196 -------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~-~~~~~~~ 267 (330)
T PRK11028 196 -------NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED-GSVLSFE 267 (330)
T ss_pred -------CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC-CCeEEEe
Confidence 2455555443 444433211 11233468899999999999777788888887522 1222222
Q ss_pred ec--CCCCCCceEECCCCC-EEEEEc
Q 015463 291 AI--LPGYPDNVRTNEKGE-FWVAIH 313 (406)
Q Consensus 291 ~~--l~g~pd~i~~d~~G~-lwv~~~ 313 (406)
.. ....|.++.++++|+ +|++..
T Consensus 268 ~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 268 GHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EEEeccccCCceEECCCCCEEEEEEc
Confidence 22 223588999999998 666653
No 21
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.88 E-value=3.9e-08 Score=96.20 Aligned_cols=228 Identities=18% Similarity=0.228 Sum_probs=122.2
Q ss_pred CCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCccc-ccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463 130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPL-RFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~-~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~ 208 (406)
..+...+.+|. +|+|||++. +||++||..++++-.+... ++ ..++.++.|..|.+|+++..
T Consensus 164 d~~V~aLv~D~-~g~lWvgT~-dGL~~fd~~~gkalql~s~----~~dk~I~al~~d~qg~LWVGTdq------------ 225 (671)
T COG3292 164 DTPVVALVFDA-NGRLWVGTP-DGLSYFDAGRGKALQLASP----PLDKAINALIADVQGRLWVGTDQ------------ 225 (671)
T ss_pred Cccceeeeeec-cCcEEEecC-CcceEEccccceEEEcCCC----cchhhHHHHHHHhcCcEEEEecc------------
Confidence 34456788998 899999975 6999999998877655432 22 45788899999999999853
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCccee
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE 288 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~ 288 (406)
+++++++++.+.......+..-+-..+..|.+.-+|..| .++++++.+.........
T Consensus 226 ----------------------Gv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGT-enGl~r~~l~rq~Lq~~~ 282 (671)
T COG3292 226 ----------------------GVYLQEAEGWRASNWGPMLPSGNILLLVQDAQGELWIGT-ENGLWRTRLPRQGLQIPL 282 (671)
T ss_pred ----------------------ceEEEchhhccccccCCCCcchheeeeecccCCCEEEee-cccceeEecCCCCccccc
Confidence 499998886333322222222222333345444445445 356777776532111110
Q ss_pred eeecCCCC--CCceEECCCCCEEEEEccCCcchhh--hhh---cChh---hhhhhhccCccceeeeeEeecCcceEEEEE
Q 015463 289 AFAILPGY--PDNVRTNEKGEFWVAIHCRRSLYSH--LMA---LYPK---IRHFLLKLPISAKTHYLIHVGGRLHAMAVK 358 (406)
Q Consensus 289 ~~~~l~g~--pd~i~~d~~G~lwv~~~~~~~~~~~--~~~---~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~ 358 (406)
. ....++ ...+..|.+|.+|+++..+...+.. ++. .++. ........+.-.. ...+...+.+-..++
T Consensus 283 ~-~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~--~~v~~~ns~g~L~va 359 (671)
T COG3292 283 S-KMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLS--WGVRQLNSIGELMVA 359 (671)
T ss_pred c-ccCCccccccceeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcc--cceeeccccceEEEe
Confidence 0 001121 2456789999999999875332211 000 0111 1111111110000 001111111112222
Q ss_pred ECCCCCEEEEEECCCCCeeeceeEEE-EeCCEEEEecCCCCeEEEEeC
Q 015463 359 YSPEGKILQVLEDSKGKVVKAISEVE-EKDGKLWMGSVLMPFVAVYDL 405 (406)
Q Consensus 359 ~d~~g~~~~~~~~~~g~~~~~~s~~~-~~~g~Ly~Gs~~~~~i~~~~~ 405 (406)
=+..|.++.+.+..-|. .++.++ ..+|.||+||. ++++.+++.
T Consensus 360 n~stG~~v~sv~q~Rg~---nit~~~~d~~g~lWlgs~-q~GLsrl~n 403 (671)
T COG3292 360 NGSTGELVRSVHQLRGM---NITTTLEDSRGRLWLGSM-QNGLSRLDN 403 (671)
T ss_pred cCCCCcEEEEeeecccc---ccchhhhccCCcEEEEec-ccchhhhcc
Confidence 23346666665443343 344443 34789999998 667887763
No 22
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=1.4e-05 Score=74.53 Aligned_cols=196 Identities=15% Similarity=0.205 Sum_probs=116.8
Q ss_pred cccCcceEEEcCCCCeeEEEecC---CEE--EEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEe
Q 015463 67 QIQGPESMAFDPLGRGPYTGVAD---GRI--LFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD 139 (406)
Q Consensus 67 ~~~gpe~i~~d~~g~~ly~g~~~---g~I--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d 139 (406)
.+..|.-++++++++.||+.... |+| ++||.+ .++.+.... ..+..|--+++|
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~--------------------~~g~~p~yvsvd 97 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT--------------------LPGSPPCYVSVD 97 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc--------------------cCCCCCeEEEEC
Confidence 45789999999999889998665 555 455554 333332111 112234678899
Q ss_pred CCCC-cEEEEeCCCcEEE---EeCCCCeEEEccc----ccCC---c-ccccccceEEcCCCCEEEE-eCCCchhhhcccc
Q 015463 140 KKTG-DLYIADAYFGLMK---VGPEGGLATSLAT----EAEG---V-PLRFTNDLDIDDEGNVYFT-DSSTNYQRRQMQK 206 (406)
Q Consensus 140 ~~~g-~L~Vad~~~gl~~---~d~~~~~~~~l~~----~~~~---~-~~~~~~~l~~d~dG~ly~t-~~~~~~~~~~~~~ 206 (406)
+ +| -|++|....|-+. +..+ |.+..... ...+ . ....+....++++|++.++ |-+
T Consensus 98 ~-~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG---------- 165 (346)
T COG2706 98 E-DGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG---------- 165 (346)
T ss_pred C-CCCEEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC----------
Confidence 8 66 4677766555333 3333 33322211 1111 0 1122556778999965554 432
Q ss_pred ccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec----ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463 207 ENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 282 (406)
Q Consensus 207 ~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~----~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~ 282 (406)
.-+++.|+.+.|.++... ..-..|.-|++.|++++.|+...-++.|..+..++.
T Consensus 166 ----------------------~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 166 ----------------------TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred ----------------------CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 246777777777665432 334567779999999999999887888888877643
Q ss_pred CCcceeeeecCCCCCC---------ceEECCCCCEEEEEccCCc
Q 015463 283 KAGNLEAFAILPGYPD---------NVRTNEKGEFWVAIHCRRS 317 (406)
Q Consensus 283 ~~~~~~~~~~l~g~pd---------~i~~d~~G~lwv~~~~~~~ 317 (406)
.++.+.+..+.-+|. .|.++++|++.-+.+.+..
T Consensus 224 -~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d 266 (346)
T COG2706 224 -VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD 266 (346)
T ss_pred -CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC
Confidence 455444433222332 3678999996666555533
No 23
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.80 E-value=2.6e-05 Score=73.01 Aligned_cols=171 Identities=16% Similarity=0.194 Sum_probs=100.7
Q ss_pred CeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEEeCC-CcEEEEe
Q 015463 81 RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIADAY-FGLMKVG 158 (406)
Q Consensus 81 ~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Vad~~-~gl~~~d 158 (406)
++++++..++.|..|+...-....... ....|.++++++ +|. +|++... +.|..+|
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~---------------------~~~~~~~l~~~~-dg~~l~~~~~~~~~v~~~d 59 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP---------------------VGQRPRGITLSK-DGKLLYVCASDSDTIQVID 59 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE---------------------CCCCCCceEECC-CCCEEEEEECCCCeEEEEE
Confidence 445566778999999875211111100 023466788998 554 6776544 5688999
Q ss_pred CCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeC
Q 015463 159 PEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDP 237 (406)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~ 237 (406)
.++++....... + ..+..++++++|+ +|++... .+.+..+|.
T Consensus 60 ~~~~~~~~~~~~--~---~~~~~~~~~~~g~~l~~~~~~--------------------------------~~~l~~~d~ 102 (300)
T TIGR03866 60 LATGEVIGTLPS--G---PDPELFALHPNGKILYIANED--------------------------------DNLVTVIDI 102 (300)
T ss_pred CCCCcEEEeccC--C---CCccEEEECCCCCEEEEEcCC--------------------------------CCeEEEEEC
Confidence 887765432111 1 1245678889886 5555421 367999999
Q ss_pred CCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC-EEEEEc
Q 015463 238 TTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIH 313 (406)
Q Consensus 238 ~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~-lwv~~~ 313 (406)
++++..........+.++++++|++.++++......+..++... +...........|..+.++++|. +|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT---YEIVDNVLVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC---CeEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence 87654332332345688999999998877765444455556432 11111111233466788888988 445543
No 24
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=3.1e-06 Score=83.19 Aligned_cols=186 Identities=19% Similarity=0.191 Sum_probs=129.4
Q ss_pred ccCcceEEEcCCCCeeEEEecC-CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463 68 IQGPESMAFDPLGRGPYTGVAD-GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (406)
Q Consensus 68 ~~gpe~i~~d~~g~~ly~g~~~-g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~ 144 (406)
...|.++++++.|+.+|+-+.+ +.|..++.. ...+.. .....|.+++++++++.
T Consensus 73 ~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~-----------------------~vG~~P~~~~~~~~~~~ 129 (381)
T COG3391 73 GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI-----------------------PVGLGPVGLAVDPDGKY 129 (381)
T ss_pred CccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe-----------------------eeccCCceEEECCCCCE
Confidence 3778999999988877876644 778888854 222211 11236899999996679
Q ss_pred EEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCC
Q 015463 145 LYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDP 220 (406)
Q Consensus 145 L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~ 220 (406)
+||++.. +.+..+|..+++.... ...|. .|.+++++++|+ +|+++..
T Consensus 130 vYV~n~~~~~~~vsvid~~t~~~~~~--~~vG~---~P~~~a~~p~g~~vyv~~~~------------------------ 180 (381)
T COG3391 130 VYVANAGNGNNTVSVIDAATNKVTAT--IPVGN---TPTGVAVDPDGNKVYVTNSD------------------------ 180 (381)
T ss_pred EEEEecccCCceEEEEeCCCCeEEEE--EecCC---CcceEEECCCCCeEEEEecC------------------------
Confidence 9999994 5689999988765443 11221 457899999997 9999853
Q ss_pred CCCcccCCCCeEEEEeCCCCeEEE-----ecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecC
Q 015463 221 SPIKITKDTGRVLKYDPTTKQTTV-----LLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAIL 293 (406)
Q Consensus 221 ~~~~~~~~~g~l~~~d~~t~~~~~-----~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l 293 (406)
.+.|..+|.++..... .......|.++++++|++.+|+++... +.+.+++...........-...
T Consensus 181 --------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~ 252 (381)
T COG3391 181 --------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS 252 (381)
T ss_pred --------CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc
Confidence 3779999988766653 233456788999999999999999876 5888888653221111111122
Q ss_pred CCCCCceEECCCCCE-EEEEcc
Q 015463 294 PGYPDNVRTNEKGEF-WVAIHC 314 (406)
Q Consensus 294 ~g~pd~i~~d~~G~l-wv~~~~ 314 (406)
. .|.++..+++|.. |++...
T Consensus 253 ~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 253 G-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred C-CCCceeECCCCCEEEEEecC
Confidence 2 5889999999984 555433
No 25
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.68 E-value=6.3e-07 Score=87.64 Aligned_cols=140 Identities=23% Similarity=0.329 Sum_probs=94.5
Q ss_pred CCcceEEEEeCCCCcEEEEeCC-------------CcEEEEeCCC--CeE---EEcccccCCcccccccceEEcCCCCEE
Q 015463 130 CGRPLGLRFDKKTGDLYIADAY-------------FGLMKVGPEG--GLA---TSLATEAEGVPLRFTNDLDIDDEGNVY 191 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~Vad~~-------------~gl~~~d~~~--~~~---~~l~~~~~~~~~~~~~~l~~d~dG~ly 191 (406)
...|.+|++|+ +|+|||++.. ..|++++... |+. +.+.. .+..|+++++.++| +|
T Consensus 13 ~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-----~l~~p~Gi~~~~~G-ly 85 (367)
T TIGR02604 13 LRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-----ELSMVTGLAVAVGG-VY 85 (367)
T ss_pred cCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-----CCCCccceeEecCC-EE
Confidence 46699999998 8999999741 2577776432 222 33322 24578999999999 99
Q ss_pred EEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEE-eCCC-----CeEEEecccC--------CCcceEEE
Q 015463 192 FTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKY-DPTT-----KQTTVLLRNL--------QFPNGLSL 257 (406)
Q Consensus 192 ~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~-d~~t-----~~~~~~~~~~--------~~~ngi~l 257 (406)
+++. .+|++| |.+. ++.+++.+++ ..++++++
T Consensus 86 V~~~----------------------------------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~ 131 (367)
T TIGR02604 86 VATP----------------------------------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAW 131 (367)
T ss_pred EeCC----------------------------------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceE
Confidence 9874 246666 3221 1444444332 34789999
Q ss_pred ecCCCEEEEEeCC-------------------CCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCEEEEEcc
Q 015463 258 SKDKSFFVFCEGS-------------------VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHC 314 (406)
Q Consensus 258 ~~d~~~l~v~~t~-------------------~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~~ 314 (406)
.+||. ||++... .++|++++.++ +..++++.....|.++++|++|++|++.+.
T Consensus 132 gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg---~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 132 GPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG---GKLRVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred CCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCC---CeEEEEecCcCCCccceECCCCCEEEEccC
Confidence 99985 7776542 14688888764 345677653445899999999999998764
No 26
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.65 E-value=6.7e-06 Score=87.07 Aligned_cols=199 Identities=19% Similarity=0.299 Sum_probs=123.0
Q ss_pred ceEEEcC-CCCeeEEE-ecCCEEEEEeCC-------ceeEEEeecCCCccccCCCCCccccccc--CCcCCcceEEEEeC
Q 015463 72 ESMAFDP-LGRGPYTG-VADGRILFWDGL-------KWTDFAFTSNNRSELCNPKPIATSYLKN--EHICGRPLGLRFDK 140 (406)
Q Consensus 72 e~i~~d~-~g~~ly~g-~~~g~I~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~gi~~d~ 140 (406)
--||++| +|. ||++ ....+|+|+..- .+..++. .++.|-+..+.|+.-.. +.....|.||++|+
T Consensus 410 Yy~AvsPvdgt-lyvSdp~s~qv~rv~sl~~~d~~~N~evvaG----~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk 484 (1899)
T KOG4659|consen 410 YYIAVSPVDGT-LYVSDPLSKQVWRVSSLEPQDSRNNYEVVAG----DGEVCLPADESCGDGALAQDAQLIFPKGIAFDK 484 (1899)
T ss_pred eEEEecCcCce-EEecCCCcceEEEeccCCccccccCeeEEec----cCcCccccccccCcchhcccceeccCCceeEcc
Confidence 4678887 676 7765 556789998532 2333432 24556665555543332 33467799999999
Q ss_pred CCCcEEEEeCCCcEEEEeCCCCeEEEcccc---------------cCCcccccccceEEcC-CCCEEEEeCCCchhhhcc
Q 015463 141 KTGDLYIADAYFGLMKVGPEGGLATSLATE---------------AEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQM 204 (406)
Q Consensus 141 ~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~---------------~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~ 204 (406)
+|+||.+|. ..|..+|.. |.+..+... .....+..|.+|+++| |+.+|+-|..
T Consensus 485 -~g~lYfaD~-t~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n-------- 553 (1899)
T KOG4659|consen 485 -MGNLYFADG-TRIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN-------- 553 (1899)
T ss_pred -CCcEEEecc-cEEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc--------
Confidence 899999995 468888864 445544321 1122456899999999 8899998853
Q ss_pred ccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec---------------------ccCCCcceEEEecCCCE
Q 015463 205 QKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL---------------------RNLQFPNGLSLSKDKSF 263 (406)
Q Consensus 205 ~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~---------------------~~~~~~ngi~l~~d~~~ 263 (406)
-+++.++. +++.... ..+..+..|+++++| .
T Consensus 554 --------------------------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G-~ 605 (1899)
T KOG4659|consen 554 --------------------------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDG-A 605 (1899)
T ss_pred --------------------------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCc-e
Confidence 24444433 2222211 123345789999999 4
Q ss_pred EEEEeCCCCeEEEEEeeCCCCcceeeeec--------------------------CCCCCCceEECCCCCEEEEEccC
Q 015463 264 FVFCEGSVGRLHKYWLIGEKAGNLEAFAI--------------------------LPGYPDNVRTNEKGEFWVAIHCR 315 (406)
Q Consensus 264 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~--------------------------l~g~pd~i~~d~~G~lwv~~~~~ 315 (406)
|||+|+.+.+|-++..-+. .++.-+++. .-..|..+++.+||.++||..+.
T Consensus 606 lyvaEsD~rriNrvr~~~t-dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 606 LYVAESDGRRINRVRKLST-DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred EEEEeccchhhhheEEecc-CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc
Confidence 9999998877766543321 011111110 01136678999999999997653
No 27
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.65 E-value=2.9e-06 Score=83.86 Aligned_cols=201 Identities=15% Similarity=0.169 Sum_probs=114.1
Q ss_pred ccCcccCcceEEEcCCCCeeEEEec-CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463 64 FLNQIQGPESMAFDPLGRGPYTGVA-DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK 140 (406)
Q Consensus 64 ~~~~~~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~ 140 (406)
+..++..|.+|++.++|+ +|+.-. .|+|++++.. ..+.+.... .. ......+.++||++++
T Consensus 25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~----~v-----------~~~~ge~GLlglal~P 88 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLP----EI-----------VNDAQHNGLLGLALHP 88 (454)
T ss_pred EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCC----ce-----------eccCCCCceeeEEECC
Confidence 345789999999999998 677666 6999999765 222221111 00 0011246689999986
Q ss_pred C------CCcEEEEeC----------CCcEEEEeCCC--Ce---EEEcccccCCcccccccceEEcCCCCEEEEeCCCch
Q 015463 141 K------TGDLYIADA----------YFGLMKVGPEG--GL---ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNY 199 (406)
Q Consensus 141 ~------~g~L~Vad~----------~~gl~~~d~~~--~~---~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~ 199 (406)
+ ++.|||+-+ ...|.|+..+. .. .+.+.........++-..|++++||.||++......
T Consensus 89 dF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~ 168 (454)
T TIGR03606 89 DFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGR 168 (454)
T ss_pred CccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCC
Confidence 3 346899842 24577776432 11 122222222222345667999999999998754311
Q ss_pred hhh-ccccccccccccccCCCCCCC---cccCCCCeEEEEeCCCC-----------eEEEecccCCCcceEEEecCCCEE
Q 015463 200 QRR-QMQKENIPLQLCSSLNDPSPI---KITKDTGRVLKYDPTTK-----------QTTVLLRNLQFPNGLSLSKDKSFF 264 (406)
Q Consensus 200 ~~~-~~~~~~~~~~~~~e~~~~~~~---~~~~~~g~l~~~d~~t~-----------~~~~~~~~~~~~ngi~l~~d~~~l 264 (406)
... +.... ...+.+ ..++++ ......|.|+|+|++.. +.+.+..++.+|.|++++|++ .|
T Consensus 169 ~~~~n~~~~-~~aQ~~---~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G-~L 243 (454)
T TIGR03606 169 NQGANFFLP-NQAQHT---PTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDG-TL 243 (454)
T ss_pred CCcccccCc-chhccc---cccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCC-CE
Confidence 000 00000 000000 000001 11234688999998743 236778899999999999965 58
Q ss_pred EEEeCCCC---eEEEEEeeCCCCcc
Q 015463 265 VFCEGSVG---RLHKYWLIGEKAGN 286 (406)
Q Consensus 265 ~v~~t~~~---~i~~~~~~g~~~~~ 286 (406)
|++|.+.. .|.++. .|.+.|.
T Consensus 244 w~~e~Gp~~~DEiN~I~-~G~NYGW 267 (454)
T TIGR03606 244 YASEQGPNSDDELNIIV-KGGNYGW 267 (454)
T ss_pred EEEecCCCCCcEEEEec-cCCcCCC
Confidence 89887553 344443 2444443
No 28
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.63 E-value=7e-05 Score=72.58 Aligned_cols=188 Identities=13% Similarity=0.049 Sum_probs=105.1
Q ss_pred cccCcceEEEcCCCCeeEEEecCCEEEEEeCC--------ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463 67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL--------KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF 138 (406)
Q Consensus 67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~ 138 (406)
++..|.+++..++|.++.+....|.+..+... ....+...+.+.. ...............++++++
T Consensus 65 gLe~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gl------l~~al~~~fa~~~~~~~~~a~ 138 (399)
T COG2133 65 GLEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGL------LDIALSPDFAQGRLVYFGISE 138 (399)
T ss_pred cccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCc------cceEecccccccceeeeEEEe
Confidence 48899999999999534444443777766533 1111111110000 000000011222344778877
Q ss_pred eCCCCcEEEEeCCCcEEEEeCCCCeE---EEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463 139 DKKTGDLYIADAYFGLMKVGPEGGLA---TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS 215 (406)
Q Consensus 139 d~~~g~L~Vad~~~gl~~~d~~~~~~---~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~ 215 (406)
. .+.+|+++. ..+.+++....+. +.+....++....+-..|++++||+||++..+.......+ +.
T Consensus 139 ~--~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq--------~~- 206 (399)
T COG2133 139 P--GGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQ--------DN- 206 (399)
T ss_pred e--cCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCccccc--------Cc-
Confidence 6 567888875 3677777221222 1222222332356778899999999999986532111110 00
Q ss_pred cCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeE
Q 015463 216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRL 274 (406)
Q Consensus 216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i 274 (406)
....+++...... .++..|+.+...+++..++.+++|+++.|....||++|.+...+
T Consensus 207 -~~~~Gk~~r~~~a-~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~ 263 (399)
T COG2133 207 -VSLAGKVLRIDRA-GIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL 263 (399)
T ss_pred -cccccceeeeccC-cccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence 0111222212223 36677777777788889999999999999867799998766444
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.58 E-value=2.6e-05 Score=78.75 Aligned_cols=194 Identities=18% Similarity=0.214 Sum_probs=128.6
Q ss_pred eeccCc--ccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463 62 IKFLNQ--IQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF 138 (406)
Q Consensus 62 ~~~~~~--~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~ 138 (406)
.++..| +..-.++++.|||..+-||..||+|..||.. ++-.++.. +|+ ....++.|
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt--------------------eHt-s~Vt~v~f 400 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT--------------------EHT-SGVTAVQF 400 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec--------------------cCC-CceEEEEE
Confidence 444444 5556789999999999999999999999987 43333221 222 23568889
Q ss_pred eCCCCcEEEEeCC-CcEEEEeCCCC-eEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccccc
Q 015463 139 DKKTGDLYIADAY-FGLMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSS 216 (406)
Q Consensus 139 d~~~g~L~Vad~~-~gl~~~d~~~~-~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e 216 (406)
.. .|+..++.+- +.+..+|.... .++.+..+ .....+++++|+.|.+.++.+- +.+
T Consensus 401 ~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P----~p~QfscvavD~sGelV~AG~~----------------d~F- 458 (893)
T KOG0291|consen 401 TA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP----EPIQFSCVAVDPSGELVCAGAQ----------------DSF- 458 (893)
T ss_pred Ee-cCCEEEEeecCCeEEeeeecccceeeeecCC----CceeeeEEEEcCCCCEEEeecc----------------ceE-
Confidence 88 7887777665 45777886533 23333222 2234678999999998887632 222
Q ss_pred CCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCC
Q 015463 217 LNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG 295 (406)
Q Consensus 217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g 295 (406)
.++.++.+||+..-.+.+...| .+++++++++ ++++.++.+.|.++++-.. .++.|.+. ...
T Consensus 459 --------------~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~-i~s 521 (893)
T KOG0291|consen 459 --------------EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS-SGTVETLE-IRS 521 (893)
T ss_pred --------------EEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeecc-CceeeeEe-ecc
Confidence 3899999999987777776666 5889999998 5577778788887776632 23333332 111
Q ss_pred CCCceEECCCCC-EEEEEccC
Q 015463 296 YPDNVRTNEKGE-FWVAIHCR 315 (406)
Q Consensus 296 ~pd~i~~d~~G~-lwv~~~~~ 315 (406)
-.-++.+.++|. +-|++..+
T Consensus 522 dvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 522 DVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred ceeEEEEcCCCCeEEEEEecc
Confidence 123566777777 77777665
No 30
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.58 E-value=4.3e-05 Score=71.52 Aligned_cols=181 Identities=13% Similarity=0.104 Sum_probs=111.2
Q ss_pred cCcceEEEcCCCCeeEEEe-cCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463 69 QGPESMAFDPLGRGPYTGV-ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI 147 (406)
Q Consensus 69 ~gpe~i~~d~~g~~ly~g~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V 147 (406)
..|+.++++++|+.+|+.. .++.|..|+......+.... ....|.++++++ +|.+++
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~---------------------~~~~~~~~~~~~-dg~~l~ 130 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP---------------------VGVEPEGMAVSP-DGKIVV 130 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee---------------------CCCCcceEEECC-CCCEEE
Confidence 3578889999998777764 46888889876222221110 013367899998 676655
Q ss_pred EeCCC--cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEE-EEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463 148 ADAYF--GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVY-FTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK 224 (406)
Q Consensus 148 ad~~~--gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly-~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 224 (406)
..... .+..+|.++++...... . ...+..++++++|..+ ++...
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~s~dg~~l~~~~~~---------------------------- 177 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVL--V---DQRPRFAEFTADGKELWVSSEI---------------------------- 177 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEE--c---CCCccEEEECCCCCEEEEEcCC----------------------------
Confidence 44432 35667887665432111 1 1235678889999744 54321
Q ss_pred ccCCCCeEEEEeCCCCeEEEecc--------cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC
Q 015463 225 ITKDTGRVLKYDPTTKQTTVLLR--------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY 296 (406)
Q Consensus 225 ~~~~~g~l~~~d~~t~~~~~~~~--------~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~ 296 (406)
.|.+..||.++++...... ....+.++++++|++.+|++....+++..+++.. +.........+.
T Consensus 178 ----~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~ 250 (300)
T TIGR03866 178 ----GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT---YEVLDYLLVGQR 250 (300)
T ss_pred ----CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC---CcEEEEEEeCCC
Confidence 3678899998776432111 1123567899999999888766667899888653 221111122345
Q ss_pred CCceEECCCCCEEEE
Q 015463 297 PDNVRTNEKGEFWVA 311 (406)
Q Consensus 297 pd~i~~d~~G~lwv~ 311 (406)
+..++++++|...++
T Consensus 251 ~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 251 VWQLAFTPDEKYLLT 265 (300)
T ss_pred cceEEECCCCCEEEE
Confidence 778889999985443
No 31
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.56 E-value=2.1e-06 Score=87.04 Aligned_cols=186 Identities=18% Similarity=0.179 Sum_probs=119.1
Q ss_pred CcceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463 70 GPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (406)
Q Consensus 70 gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~ 146 (406)
-|-+|.+|- +..++|+......|.+-..+ +-+.+.. ...+.|-||++|....++|
T Consensus 1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n----------------------~~L~SPEGiAVDh~~Rn~y 1083 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN----------------------SGLISPEGIAVDHIRRNMY 1083 (1289)
T ss_pred eeeeeecccccceEEEeecCCCccccccccCCCCceeec----------------------ccCCCccceeeeeccceee
Confidence 455666773 44456777766666554433 2222211 1246799999998677899
Q ss_pred EEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463 147 IADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK 224 (406)
Q Consensus 147 Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 224 (406)
-+|+. ..|-.-..++.+.+.|... -+..|.+|++|+ .|+||++|+..
T Consensus 1084 wtDS~lD~IevA~LdG~~rkvLf~t----dLVNPR~iv~D~~rgnLYwtDWnR--------------------------- 1132 (1289)
T KOG1214|consen 1084 WTDSVLDKIEVALLDGSERKVLFYT----DLVNPRAIVVDPIRGNLYWTDWNR--------------------------- 1132 (1289)
T ss_pred eeccccchhheeecCCceeeEEEee----cccCcceEEeecccCceeeccccc---------------------------
Confidence 88876 3333333345554554432 245688999998 77999999741
Q ss_pred ccCCCCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEEC
Q 015463 225 ITKDTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 303 (406)
Q Consensus 225 ~~~~~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d 303 (406)
.+-.|-+.+.+...-+.+ .+.+.-|||+.+.|-.+.|.|++.+.+|+--...+| +++..++..| .+|-+|.-+
T Consensus 1133 ---enPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g--~gRR~i~~~L-qYPF~itsy 1206 (1289)
T KOG1214|consen 1133 ---ENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDG--TGRRVIQNNL-QYPFSITSY 1206 (1289)
T ss_pred ---cCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCC--Ccchhhhhcc-cCceeeeec
Confidence 122344444443333333 467888999999999999999999999998888765 3444444443 468888877
Q ss_pred CCCCEEEEEccC
Q 015463 304 EKGEFWVAIHCR 315 (406)
Q Consensus 304 ~~G~lwv~~~~~ 315 (406)
.+. ||-+.+..
T Consensus 1207 ~~~-fY~TDWk~ 1217 (1289)
T KOG1214|consen 1207 ADH-FYHTDWKR 1217 (1289)
T ss_pred ccc-ceeecccc
Confidence 665 77766543
No 32
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00021 Score=70.25 Aligned_cols=191 Identities=15% Similarity=0.187 Sum_probs=126.4
Q ss_pred CcceEEEcCCCCeeEEEecC-CEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463 70 GPESMAFDPLGRGPYTGVAD-GRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~-g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va 148 (406)
.|-.++.+++|..+|+.... ..+..++.. ...+... .......|.++++.+...++|+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~-------------------~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQS-------------------LSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeee-------------------ccCCCccccceeeCCCCCeEEEe
Confidence 88999999999656665433 334444432 1111100 00112568899998855569999
Q ss_pred eCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463 149 DAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT 226 (406)
Q Consensus 149 d~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 226 (406)
+.. +.+..+|..+.+..... .-| ..|.+++++++| .+|+++...
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~--~vG---~~P~~~~~~~~~~~vYV~n~~~----------------------------- 137 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSI--PVG---LGPVGLAVDPDGKYVYVANAGN----------------------------- 137 (381)
T ss_pred cCCCCeEEEEcCcccceeeEe--eec---cCCceEEECCCCCEEEEEeccc-----------------------------
Confidence 866 67888886554332211 112 268899999988 899998631
Q ss_pred CCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcc--eeeeecCCCCCCceEECC
Q 015463 227 KDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN--LEAFAILPGYPDNVRTNE 304 (406)
Q Consensus 227 ~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~--~~~~~~l~g~pd~i~~d~ 304 (406)
..+.+..+|..+++.......-..|.+++++++++.+|+++...++|..++..+..... ..........|..+++++
T Consensus 138 -~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~ 216 (381)
T COG3391 138 -GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP 216 (381)
T ss_pred -CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC
Confidence 24679999999887665543333678999999999999999888999999966432211 000122334588999999
Q ss_pred CCC-EEEEEccC
Q 015463 305 KGE-FWVAIHCR 315 (406)
Q Consensus 305 ~G~-lwv~~~~~ 315 (406)
+|. +|++....
T Consensus 217 ~g~~~yV~~~~~ 228 (381)
T COG3391 217 DGNRVYVANDGS 228 (381)
T ss_pred CCCEEEEEeccC
Confidence 999 88887654
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.40 E-value=4e-05 Score=68.09 Aligned_cols=190 Identities=18% Similarity=0.201 Sum_probs=117.5
Q ss_pred cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~ 144 (406)
++.-..--++.|..+|+.+|+|+.||.+..||.... .|+- ...+. .....+...+++++
T Consensus 80 e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~------------~~qR--------~~~~~-spVn~vvlhpnQte 138 (311)
T KOG0315|consen 80 EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL------------SCQR--------NYQHN-SPVNTVVLHPNQTE 138 (311)
T ss_pred eccCCceEEEEEeecCeEEEecCCCceEEEEeccCc------------ccch--------hccCC-CCcceEEecCCcce
Confidence 333344567778889999999999999999986510 0110 01111 22356788887889
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463 145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK 224 (406)
Q Consensus 145 L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 224 (406)
|+++|..+.|..+|.............+ ..++..+.+++||.+.++..+
T Consensus 139 Lis~dqsg~irvWDl~~~~c~~~liPe~---~~~i~sl~v~~dgsml~a~nn---------------------------- 187 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGENSCTHELIPED---DTSIQSLTVMPDGSMLAAANN---------------------------- 187 (311)
T ss_pred EEeecCCCcEEEEEccCCccccccCCCC---CcceeeEEEcCCCcEEEEecC----------------------------
Confidence 9999988889999988765444332222 246788999999988887532
Q ss_pred ccCCCCeEEEEeCCCCeEEEec---ccCCCcc----eEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC-
Q 015463 225 ITKDTGRVLKYDPTTKQTTVLL---RNLQFPN----GLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY- 296 (406)
Q Consensus 225 ~~~~~g~l~~~d~~t~~~~~~~---~~~~~~n----gi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~- 296 (406)
.|+.|+++.-+++..... ..++.-+ -..+|||++.|--+ .....++.++.++- . ..|.. +.|.
T Consensus 188 ----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~-ssdktv~iwn~~~~-~-kle~~--l~gh~ 258 (311)
T KOG0315|consen 188 ----KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC-SSDKTVKIWNTDDF-F-KLELV--LTGHQ 258 (311)
T ss_pred ----CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee-cCCceEEEEecCCc-e-eeEEE--eecCC
Confidence 477888887665443221 1222222 24589999876444 44567777776643 0 11111 2221
Q ss_pred --CCceEECCCCCEEEEEccC
Q 015463 297 --PDNVRTNEKGEFWVAIHCR 315 (406)
Q Consensus 297 --pd~i~~d~~G~lwv~~~~~ 315 (406)
--+-+++.||.+.|+..+.
T Consensus 259 rWvWdc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 259 RWVWDCAFSADGEYLVTASSD 279 (311)
T ss_pred ceEEeeeeccCccEEEecCCC
Confidence 2234567788777665443
No 34
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.39 E-value=6.6e-05 Score=68.75 Aligned_cols=195 Identities=11% Similarity=0.091 Sum_probs=103.1
Q ss_pred cCcccCcceEEEcCCCCeeEEE-ecCCEEEEEeCC-ce-eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463 65 LNQIQGPESMAFDPLGRGPYTG-VADGRILFWDGL-KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK 141 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~g~~ly~g-~~~g~I~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~ 141 (406)
.+-...+.+|+++++.+.||+- -..+.|+.++.+ .+ ..+... ..+.+-||++-.
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~----------------------g~~D~EgI~y~g- 74 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLD----------------------GFGDYEGITYLG- 74 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-S----------------------S-SSEEEEEE-S-
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCC----------------------CCCCceeEEEEC-
Confidence 3334458999999986657764 456889999876 32 222111 135688999886
Q ss_pred CCcEEEEeCC-CcEEEEeC--CCCeE-----EEcccccCCcccccccceEEcCC-CCEEEEeCCCchhhhcccccccccc
Q 015463 142 TGDLYIADAY-FGLMKVGP--EGGLA-----TSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQ 212 (406)
Q Consensus 142 ~g~L~Vad~~-~gl~~~d~--~~~~~-----~~l~~~~~~~~~~~~~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~ 212 (406)
++.+.+++.. +.|+.++. .+..+ +.+.............+|+.|+. +++|++.-
T Consensus 75 ~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE----------------- 137 (248)
T PF06977_consen 75 NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE----------------- 137 (248)
T ss_dssp TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-----------------
T ss_pred CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-----------------
Confidence 7777777754 56777766 22221 11211122222335778999986 46777641
Q ss_pred ccccCCCCCCCcccCCCCeEEEEeC--CCCeEEEec--------ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463 213 LCSSLNDPSPIKITKDTGRVLKYDP--TTKQTTVLL--------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 282 (406)
Q Consensus 213 ~~~e~~~~~~~~~~~~~g~l~~~d~--~t~~~~~~~--------~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~ 282 (406)
....+|+.++. ......... .....+.++++.|....+|+-.....+|..++.+|.
T Consensus 138 --------------~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~ 203 (248)
T PF06977_consen 138 --------------RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR 203 (248)
T ss_dssp --------------SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred --------------CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC
Confidence 11234666664 222222111 123456899999988888888888889999986653
Q ss_pred CCcceeeeecCCC------CCCceEECCCCCEEEEEc
Q 015463 283 KAGNLEAFAILPG------YPDNVRTNEKGEFWVAIH 313 (406)
Q Consensus 283 ~~~~~~~~~~l~g------~pd~i~~d~~G~lwv~~~ 313 (406)
-.+....-....| .|.||++|++|+|||..-
T Consensus 204 ~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 204 VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 1111111111111 378999999999999874
No 35
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.37 E-value=0.00011 Score=71.84 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=93.7
Q ss_pred cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEEe
Q 015463 71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIAD 149 (406)
Q Consensus 71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Vad 149 (406)
+-++++.+||+.+|+...+|.|.++|....+.+... ..+..|.|+++++ +|+ ++++.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i---------------------~~G~~~~~i~~s~-DG~~~~v~n 96 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI---------------------KVGGNPRGIAVSP-DGKYVYVAN 96 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE---------------------E-SSEEEEEEE---TTTEEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE---------------------ecCCCcceEEEcC-CCCEEEEEe
Confidence 455778899999999999999999998732222211 1256689999998 555 67776
Q ss_pred CC-CcEEEEeCCCCeEE-Ecccc-c-CCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463 150 AY-FGLMKVGPEGGLAT-SLATE-A-EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI 225 (406)
Q Consensus 150 ~~-~gl~~~d~~~~~~~-~l~~~-~-~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 225 (406)
.. +.+..+|.++.+.. .+... . ...+-..+..+...+....|+.+
T Consensus 97 ~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~------------------------------- 145 (369)
T PF02239_consen 97 YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN------------------------------- 145 (369)
T ss_dssp EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE-------------------------------
T ss_pred cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE-------------------------------
Confidence 54 67899998776432 22211 0 11122234456666666656554
Q ss_pred cCCCCeEEEEeCCCCe--EEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 226 TKDTGRVLKYDPTTKQ--TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 226 ~~~~g~l~~~d~~t~~--~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
....+.++.+|.++.+ .....+.-.++.+..+++|+++++++....+.|-.++.+
T Consensus 146 lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 146 LKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp ETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred EccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence 2335788888865432 222333446788899999999999987777788888754
No 36
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.36 E-value=0.00072 Score=66.08 Aligned_cols=201 Identities=15% Similarity=0.138 Sum_probs=128.5
Q ss_pred ceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463 61 EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK 140 (406)
Q Consensus 61 ~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~ 140 (406)
..+..|....-.++++.++|..+|+++++|.|..|+...-+..... -+...+...+|+...
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~-------------------g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA-------------------GKGHTNQIKGMAASE 373 (603)
T ss_pred hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccc-------------------cccccceEEEEeecC
Confidence 3445566677789999999999999999999999987511100000 011134466788775
Q ss_pred CCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463 141 KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP 220 (406)
Q Consensus 141 ~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~ 220 (406)
.+.|+.......|.+++...+....-... .-...|-++++.++|.+-+-...
T Consensus 374 -~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~---~lg~QP~~lav~~d~~~avv~~~------------------------ 425 (603)
T KOG0318|consen 374 -SGELFTIGWDDTLRVISLKDNGYTKSEVV---KLGSQPKGLAVLSDGGTAVVACI------------------------ 425 (603)
T ss_pred -CCcEEEEecCCeEEEEecccCccccccee---ecCCCceeEEEcCCCCEEEEEec------------------------
Confidence 68899888888888887754433211000 11234668999988754443321
Q ss_pred CCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCce
Q 015463 221 SPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV 300 (406)
Q Consensus 221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i 300 (406)
..|..+.-.++-.+. .-...+.++|++||++.+.|-.. .+.|+.|.+.|..........+..+-+..+
T Consensus 426 ---------~~iv~l~~~~~~~~~--~~~y~~s~vAv~~~~~~vaVGG~-Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 426 ---------SDIVLLQDQTKVSSI--PIGYESSAVAVSPDGSEVAVGGQ-DGKVHVYSLSGDELKEEAKLLEHRAAITDV 493 (603)
T ss_pred ---------CcEEEEecCCcceee--ccccccceEEEcCCCCEEEEecc-cceEEEEEecCCcccceeeeecccCCceEE
Confidence 235555433332221 12245678999999998877654 467999999975443222333456778889
Q ss_pred EECCCCCEEEEEccCCcchh
Q 015463 301 RTNEKGEFWVAIHCRRSLYS 320 (406)
Q Consensus 301 ~~d~~G~lwv~~~~~~~~~~ 320 (406)
+.++||.+.++....|.+..
T Consensus 494 aySpd~~yla~~Da~rkvv~ 513 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVL 513 (603)
T ss_pred EECCCCcEEEEeccCCcEEE
Confidence 99999999998876655443
No 37
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=0.00041 Score=69.47 Aligned_cols=175 Identities=15% Similarity=0.086 Sum_probs=99.6
Q ss_pred ceEEEcCCCCeeEEEec---CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cE
Q 015463 72 ESMAFDPLGRGPYTGVA---DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DL 145 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~---~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L 145 (406)
.+++++++|+.++.... ...|++++.. ..+.+... .+.....++++ +| .|
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-----------------------~g~~~~~~~Sp-DG~~l 262 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-----------------------RGINGAPSFSP-DGRRL 262 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-----------------------CCCccCceECC-CCCEE
Confidence 35578889885554432 2358888765 22222110 01112457888 55 45
Q ss_pred EEEeCCC---cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCC
Q 015463 146 YIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221 (406)
Q Consensus 146 ~Vad~~~---gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 221 (406)
+++.... .|+.+|.++++.+.+.... .......+.+||+ |+++...
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~-----~~~~~~~~spDG~~l~f~sd~------------------------- 312 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHF-----GIDTEPTWAPDGKSIYFTSDR------------------------- 312 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECccCC-----CCccceEECCCCCEEEEEECC-------------------------
Confidence 5443322 4999999988876654321 1123567888986 5555321
Q ss_pred CCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecCCCCCCc
Q 015463 222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDN 299 (406)
Q Consensus 222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l~g~pd~ 299 (406)
.+...|+.+|.++++.+.+..........+++||++.++++.... .+|+.+++.+. ....+... +....
T Consensus 313 -----~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g---~~~~Lt~~-~~~~~ 383 (433)
T PRK04922 313 -----GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG---SVRTLTPG-SLDES 383 (433)
T ss_pred -----CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC---CeEECCCC-CCCCC
Confidence 112359999988887766543223344688999999988875432 36888887542 22233221 12234
Q ss_pred eEECCCCCEE
Q 015463 300 VRTNEKGEFW 309 (406)
Q Consensus 300 i~~d~~G~lw 309 (406)
...++||+..
T Consensus 384 p~~spdG~~i 393 (433)
T PRK04922 384 PSFAPNGSMV 393 (433)
T ss_pred ceECCCCCEE
Confidence 5678888843
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.28 E-value=0.0014 Score=59.54 Aligned_cols=182 Identities=15% Similarity=0.111 Sum_probs=111.7
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC-
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA- 150 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~- 150 (406)
.++.+.++++.++++..+|.|..|+.......... ......+..+.+.+ +++++++..
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~--------------------~~~~~~i~~~~~~~-~~~~~~~~~~ 113 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTL--------------------TGHTSYVSSVAFSP-DGRILSSSSR 113 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE--------------------eccCCcEEEEEEcC-CCCEEEEecC
Confidence 47788888877899999999999987521111000 01123467788887 567777666
Q ss_pred CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463 151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG 230 (406)
Q Consensus 151 ~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g 230 (406)
.+.+..++..+++....... ....+..+.+++++.++++... +|
T Consensus 114 ~~~i~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~--------------------------------~~ 157 (289)
T cd00200 114 DKTIKVWDVETGKCLTTLRG----HTDWVNSVAFSPDGTFVASSSQ--------------------------------DG 157 (289)
T ss_pred CCeEEEEECCCcEEEEEecc----CCCcEEEEEEcCcCCEEEEEcC--------------------------------CC
Confidence 56788999875543322111 1124678888888877776531 36
Q ss_pred eEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCEE
Q 015463 231 RVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFW 309 (406)
Q Consensus 231 ~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lw 309 (406)
.+..||..+++....... ......++++++++.++++.. .+.+..|++...+ ....+....+....+..++++.++
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGK--CLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred cEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCc--eecchhhcCCceEEEEEcCCCcEE
Confidence 788888876554333222 224567899999987777654 6788888875311 111111112234556777777777
Q ss_pred EEEc
Q 015463 310 VAIH 313 (406)
Q Consensus 310 v~~~ 313 (406)
++..
T Consensus 235 ~~~~ 238 (289)
T cd00200 235 ASGS 238 (289)
T ss_pred EEEc
Confidence 7664
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.26 E-value=0.0026 Score=57.78 Aligned_cols=184 Identities=19% Similarity=0.223 Sum_probs=109.7
Q ss_pred cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cEEE
Q 015463 69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DLYI 147 (406)
Q Consensus 69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L~V 147 (406)
....++.+.++++.++++..+|.|..|+........... ........+.+.+ ++ .+++
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--------------------~~~~~i~~~~~~~-~~~~l~~ 68 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--------------------GHTGPVRDVAASA-DGTYLAS 68 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe--------------------cCCcceeEEEECC-CCCEEEE
Confidence 345688899998888889889999988765111110000 0012234778887 45 5666
Q ss_pred EeCCCcEEEEeCCCCeE-EEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463 148 ADAYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT 226 (406)
Q Consensus 148 ad~~~gl~~~d~~~~~~-~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 226 (406)
+...+.+..++.++++. ..+.. ....+..+...+++.++++...
T Consensus 69 ~~~~~~i~i~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~------------------------------ 113 (289)
T cd00200 69 GSSDKTIRLWDLETGECVRTLTG-----HTSYVSSVAFSPDGRILSSSSR------------------------------ 113 (289)
T ss_pred EcCCCeEEEEEcCcccceEEEec-----cCCcEEEEEEcCCCCEEEEecC------------------------------
Confidence 66667788888876432 22211 1124667888888877777642
Q ss_pred CCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCC
Q 015463 227 KDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK 305 (406)
Q Consensus 227 ~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~ 305 (406)
.|.+..||..+++....... ......+++++++..++.. ...+.|..|++...+. ...+....+....+..+++
T Consensus 114 --~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~ 188 (289)
T cd00200 114 --DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS-SQDGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPD 188 (289)
T ss_pred --CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE-cCCCcEEEEEcccccc--ceeEecCccccceEEECCC
Confidence 37799999886654443332 2345678899987765544 3457888888753211 1122212223456778888
Q ss_pred CC-EEEEEc
Q 015463 306 GE-FWVAIH 313 (406)
Q Consensus 306 G~-lwv~~~ 313 (406)
|+ ++++..
T Consensus 189 ~~~l~~~~~ 197 (289)
T cd00200 189 GEKLLSSSS 197 (289)
T ss_pred cCEEEEecC
Confidence 85 555544
No 40
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=0.00074 Score=67.90 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=97.7
Q ss_pred eEEEcCCCCee-EEEecC--CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463 73 SMAFDPLGRGP-YTGVAD--GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI 147 (406)
Q Consensus 73 ~i~~d~~g~~l-y~g~~~--g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V 147 (406)
+..+++||+.+ |+...+ ..|+.++.. +.+.+... .+.....++++++..|++
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-----------------------~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-----------------------PGINGAPRFSPDGKKLAL 278 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-----------------------CCCcCCeeECCCCCEEEE
Confidence 56788898854 444333 357888765 22222110 011123577883334655
Q ss_pred EeCCC---cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463 148 ADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI 223 (406)
Q Consensus 148 ad~~~---gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 223 (406)
+.... .|+.+|.++++.+.+.... .......+.+||. |+++...
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~~~~lt~~~-----~~~~~p~wSpDG~~I~f~s~~--------------------------- 326 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKALTRITRHR-----AIDTEPSWHPDGKSLIFTSER--------------------------- 326 (448)
T ss_pred EEeCCCCeEEEEEECCCCCeEECccCC-----CCccceEECCCCCEEEEEECC---------------------------
Confidence 43332 4999999988877654321 1234457788885 5555321
Q ss_pred cccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecCCCCCCceE
Q 015463 224 KITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVR 301 (406)
Q Consensus 224 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~ 301 (406)
.+...|+++|.++++.+.+........+.+++||++.++++.... .+|+++++++. ....+.. ........
T Consensus 327 ---~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g---~~~~lt~-~~~d~~ps 399 (448)
T PRK04792 327 ---GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG---AMQVLTS-TRLDESPS 399 (448)
T ss_pred ---CCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC---CeEEccC-CCCCCCce
Confidence 112469999998888776642222334578999999998876533 36777887643 2222221 11112335
Q ss_pred ECCCCC
Q 015463 302 TNEKGE 307 (406)
Q Consensus 302 ~d~~G~ 307 (406)
.+++|+
T Consensus 400 ~spdG~ 405 (448)
T PRK04792 400 VAPNGT 405 (448)
T ss_pred ECCCCC
Confidence 677777
No 41
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.19 E-value=0.00038 Score=74.36 Aligned_cols=188 Identities=18% Similarity=0.266 Sum_probs=119.8
Q ss_pred cccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463 67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (406)
Q Consensus 67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L 145 (406)
.+..|-.+|..+||. +|+|.++- |.|+-++ .+..+....... ...-+-|+++|-+|.|
T Consensus 363 ~L~aPvala~a~DGS-l~VGDfNy-IRRI~~dg~v~tIl~L~~t~-------------------~sh~Yy~AvsPvdgtl 421 (1899)
T KOG4659|consen 363 SLFAPVALAYAPDGS-LIVGDFNY-IRRISQDGQVSTILTLGLTD-------------------TSHSYYIAVSPVDGTL 421 (1899)
T ss_pred eeeceeeEEEcCCCc-EEEccchh-eeeecCCCceEEEEEecCCC-------------------ccceeEEEecCcCceE
Confidence 467899999999999 99998875 8888877 666655432110 1113568899989999
Q ss_pred EEEeCC-CcEEEEeCCCC-----eEEEcccc----------------cCCcccccccceEEcCCCCEEEEeCCCchhhhc
Q 015463 146 YIADAY-FGLMKVGPEGG-----LATSLATE----------------AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQ 203 (406)
Q Consensus 146 ~Vad~~-~gl~~~d~~~~-----~~~~l~~~----------------~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~ 203 (406)
||.|.. +.|+|+.--.. ..+.++.. ....++.+|.+|++|++|+|||+|..
T Consensus 422 yvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t------- 494 (1899)
T KOG4659|consen 422 YVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT------- 494 (1899)
T ss_pred EecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-------
Confidence 999986 67888742111 12222211 11246789999999999999999964
Q ss_pred cccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec--------------------ccCCCcceEEEecCCCE
Q 015463 204 MQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL--------------------RNLQFPNGLSLSKDKSF 263 (406)
Q Consensus 204 ~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--------------------~~~~~~ngi~l~~d~~~ 263 (406)
++-.+|.. |.+..+. -.+..|..+|++|=.+.
T Consensus 495 ---------------------------~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdns 546 (1899)
T KOG4659|consen 495 ---------------------------RIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNS 546 (1899)
T ss_pred ---------------------------EEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCe
Confidence 12222221 2222211 12456788999996667
Q ss_pred EEEEeCCCCeEEEEEeeCCCCcceeeee------cCCC---------------CCCceEECCCCCEEEEEccCC
Q 015463 264 FVFCEGSVGRLHKYWLIGEKAGNLEAFA------ILPG---------------YPDNVRTNEKGEFWVAIHCRR 316 (406)
Q Consensus 264 l~v~~t~~~~i~~~~~~g~~~~~~~~~~------~l~g---------------~pd~i~~d~~G~lwv~~~~~~ 316 (406)
|+|.++ +-|++++..+. ..+.. ++++ .+..|++..+|.|||+-..++
T Consensus 547 l~Vld~--nvvlrit~~~r----V~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~r 614 (1899)
T KOG4659|consen 547 LLVLDT--NVVLRITVVHR----VRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGR 614 (1899)
T ss_pred EEEeec--ceEEEEccCcc----EEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccch
Confidence 889875 56777665431 11111 1111 356789999999999977654
No 42
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.0056 Score=56.37 Aligned_cols=186 Identities=12% Similarity=0.088 Sum_probs=109.1
Q ss_pred cCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463 69 QGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (406)
Q Consensus 69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L 145 (406)
.-++++.++++|..+.+.+.+..|..++.. ....+.... .| +.-+.|-....++
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk----------------------yG-~~~~~Fth~~~~~ 71 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK----------------------YG-VDLACFTHHSNTV 71 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc----------------------cc-ccEEEEecCCceE
Confidence 457899999999988888888888888865 222221110 01 2223333324444
Q ss_pred EEEeC--CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463 146 YIADA--YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI 223 (406)
Q Consensus 146 ~Vad~--~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 223 (406)
.-+.. ...|..++..+.+..++- .|- -..+++|.+.|-+..+++.+-
T Consensus 72 i~sStk~d~tIryLsl~dNkylRYF---~GH-~~~V~sL~~sP~~d~FlS~S~--------------------------- 120 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNKYLRYF---PGH-KKRVNSLSVSPKDDTFLSSSL--------------------------- 120 (311)
T ss_pred EEccCCCCCceEEEEeecCceEEEc---CCC-CceEEEEEecCCCCeEEeccc---------------------------
Confidence 44443 235666666555543332 221 235889999998888888653
Q ss_pred cccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCC--CCce
Q 015463 224 KITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGY--PDNV 300 (406)
Q Consensus 224 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~--pd~i 300 (406)
+..+..+|....+...++.. ..+.-.|++|+|- ++.+...+..|..|++.--..|..+.|. ..+-. =.++
T Consensus 121 -----D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l 193 (311)
T KOG1446|consen 121 -----DKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDL 193 (311)
T ss_pred -----CCeEEeeEecCCCCceEEec-CCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeee
Confidence 34577777775555444432 3344578888774 4444444558999998743344444443 11111 1357
Q ss_pred EECCCCC-EEEEEccC
Q 015463 301 RTNEKGE-FWVAIHCR 315 (406)
Q Consensus 301 ~~d~~G~-lwv~~~~~ 315 (406)
.++++|. +.+++..+
T Consensus 194 ~FS~dGK~iLlsT~~s 209 (311)
T KOG1446|consen 194 EFSPDGKSILLSTNAS 209 (311)
T ss_pred EEcCCCCEEEEEeCCC
Confidence 8899998 66777654
No 43
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.13 E-value=0.00027 Score=67.98 Aligned_cols=103 Identities=13% Similarity=0.106 Sum_probs=71.3
Q ss_pred CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeC---------CCCeEEEEEeeCCCCcceeeeecCCC-----
Q 015463 230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEG---------SVGRLHKYWLIGEKAGNLEAFAILPG----- 295 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t---------~~~~i~~~~~~g~~~~~~~~~~~l~g----- 295 (406)
|+++.+|.+++++.-....-..|+++ +|+|++.+|++++ ....|..++....+.-. ++ .++.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~-~i--~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA-DI--ELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe-EE--ccCCCchhh
Confidence 78999999998876655556788997 9999999999999 67788888876321111 11 1222
Q ss_pred ---CCCceEECCCCC-EEEEEccC-CcchhhhhhcChhhhhhhhccCccc
Q 015463 296 ---YPDNVRTNEKGE-FWVAIHCR-RSLYSHLMALYPKIRHFLLKLPISA 340 (406)
Q Consensus 296 ---~pd~i~~d~~G~-lwv~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (406)
.|..+++++||+ +||+.... ..+-. .+-..++++..++.+.
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V----vD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGV----VDLEGKAFVRMMDVPD 148 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEE----EECCCCcEEEEEeCCC
Confidence 344889999998 88887542 22111 1445778888887765
No 44
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.13 E-value=0.0045 Score=61.15 Aligned_cols=146 Identities=13% Similarity=0.130 Sum_probs=75.4
Q ss_pred eeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcc-eEEEEeCCCCcEEEEeCCCcEEEEeC
Q 015463 82 GPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIADAYFGLMKVGP 159 (406)
Q Consensus 82 ~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~d~~~g~L~Vad~~~gl~~~d~ 159 (406)
.+|+.+.+|.++.+|.+ .-............. ......... -+++++ ++.+|+++..+.|+.+|.
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~-----------~~~~~~~~~~~~~~v~--~~~v~v~~~~g~l~ald~ 137 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGW-----------FSKNKSALLSGGVTVA--GGKVYIGSEKGQVYALNA 137 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccc-----------cccccccccccccEEE--CCEEEEEcCCCEEEEEEC
Confidence 49999999999999976 222222111100000 000000000 123454 689999987778999999
Q ss_pred CCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCC
Q 015463 160 EGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTT 239 (406)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t 239 (406)
++|+.. ......+.... ..++. +|.+|+.+.. |.|+.+|+++
T Consensus 138 ~tG~~~-W~~~~~~~~~s---sP~v~-~~~v~v~~~~---------------------------------g~l~ald~~t 179 (394)
T PRK11138 138 EDGEVA-WQTKVAGEALS---RPVVS-DGLVLVHTSN---------------------------------GMLQALNESD 179 (394)
T ss_pred CCCCCc-ccccCCCceec---CCEEE-CCEEEEECCC---------------------------------CEEEEEEccC
Confidence 888632 11111121111 11232 6788887642 6799999998
Q ss_pred CeEEEecc-cCC-----CcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463 240 KQTTVLLR-NLQ-----FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 240 ~~~~~~~~-~~~-----~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g 281 (406)
|+..--.. ... .....++. +..+++. +..++++.++.+.
T Consensus 180 G~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~-~~~g~v~a~d~~~ 224 (394)
T PRK11138 180 GAVKWTVNLDVPSLTLRGESAPATA--FGGAIVG-GDNGRVSAVLMEQ 224 (394)
T ss_pred CCEeeeecCCCCcccccCCCCCEEE--CCEEEEE-cCCCEEEEEEccC
Confidence 87542211 100 00111222 2345554 3457787777653
No 45
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.12 E-value=0.0051 Score=60.31 Aligned_cols=142 Identities=16% Similarity=0.152 Sum_probs=76.4
Q ss_pred eEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCC
Q 015463 73 SMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY 151 (406)
Q Consensus 73 ~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~ 151 (406)
+++++ ++ .+|+++.+|.++.+|.. +-......... ..... .+.+ ++.+|+++..
T Consensus 60 ~p~v~-~~-~v~v~~~~g~v~a~d~~tG~~~W~~~~~~------------------~~~~~---p~v~--~~~v~v~~~~ 114 (377)
T TIGR03300 60 QPAVA-GG-KVYAADADGTVVALDAETGKRLWRVDLDE------------------RLSGG---VGAD--GGLVFVGTEK 114 (377)
T ss_pred ceEEE-CC-EEEEECCCCeEEEEEccCCcEeeeecCCC------------------Ccccc---eEEc--CCEEEEEcCC
Confidence 44453 34 49999999999999965 22222111100 01122 2344 6889999877
Q ss_pred CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCe
Q 015463 152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGR 231 (406)
Q Consensus 152 ~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~ 231 (406)
+.|+.+|.++|+..- .....+... ...++ .++.+|+... .|.
T Consensus 115 g~l~ald~~tG~~~W-~~~~~~~~~---~~p~v-~~~~v~v~~~---------------------------------~g~ 156 (377)
T TIGR03300 115 GEVIALDAEDGKELW-RAKLSSEVL---SPPLV-ANGLVVVRTN---------------------------------DGR 156 (377)
T ss_pred CEEEEEECCCCcEee-eeccCceee---cCCEE-ECCEEEEECC---------------------------------CCe
Confidence 789999998776432 111112111 11122 2567777653 377
Q ss_pred EEEEeCCCCeEEEecccCCC------cceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 232 VLKYDPTTKQTTVLLRNLQF------PNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 232 l~~~d~~t~~~~~~~~~~~~------~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
|+.+|+++|+..--...... ....++. + +.+|+. +..+++..+++.
T Consensus 157 l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~-~~~g~v~ald~~ 208 (377)
T TIGR03300 157 LTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVG-FAGGKLVALDLQ 208 (377)
T ss_pred EEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEE-CCCCEEEEEEcc
Confidence 99999988875322111000 0111222 3 345444 445788888865
No 46
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.12 E-value=0.0026 Score=63.66 Aligned_cols=174 Identities=14% Similarity=0.125 Sum_probs=96.5
Q ss_pred eEEEcCCCCeeEEEec-C--CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cEE
Q 015463 73 SMAFDPLGRGPYTGVA-D--GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DLY 146 (406)
Q Consensus 73 ~i~~d~~g~~ly~g~~-~--g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L~ 146 (406)
++++.+||+.++..+. + ..|+.++.. ..+.+... .+.....++++ +| .|+
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-----------------------~g~~~~~~~SP-DG~~la 255 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-----------------------KGSNSAPAWSP-DGRTLA 255 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-----------------------CCCccceEECC-CCCEEE
Confidence 5578888875544432 2 357877765 22222110 11223457888 55 455
Q ss_pred EEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463 147 IADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP 222 (406)
Q Consensus 147 Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 222 (406)
++... ..|+.+|.+++..+.+... .+ ........+||+ |+++...
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~----~~~~~~wSpDG~~l~f~s~~-------------------------- 304 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGSGLRRLTQS-SG----IDTEPFFSPDGRSIYFTSDR-------------------------- 304 (427)
T ss_pred EEEccCCCceEEEEECCCCCcEECCCC-CC----CCcCeEEcCCCCEEEEEecC--------------------------
Confidence 44332 2489999887776655332 11 123457889995 5655321
Q ss_pred CcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecCCCCCCce
Q 015463 223 IKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNV 300 (406)
Q Consensus 223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l~g~pd~i 300 (406)
.+.-.|+.++..+++.+.+..........+++|||+.++++.... ..|+.+++.+. ....+... +.....
T Consensus 305 ----~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g---~~~~lt~~-~~~~~p 376 (427)
T PRK02889 305 ----GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG---QVTALTDT-TRDESP 376 (427)
T ss_pred ----CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC---CeEEccCC-CCccCc
Confidence 112358888887776655542222233578999999987765433 36888887643 22222211 123456
Q ss_pred EECCCCCEE
Q 015463 301 RTNEKGEFW 309 (406)
Q Consensus 301 ~~d~~G~lw 309 (406)
..++||+..
T Consensus 377 ~~spdg~~l 385 (427)
T PRK02889 377 SFAPNGRYI 385 (427)
T ss_pred eECCCCCEE
Confidence 778888743
No 47
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.12 E-value=0.0046 Score=62.00 Aligned_cols=138 Identities=18% Similarity=0.134 Sum_probs=83.2
Q ss_pred ceEEEEeCCCCc-EE-EEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccc
Q 015463 133 PLGLRFDKKTGD-LY-IADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKE 207 (406)
Q Consensus 133 p~gi~~d~~~g~-L~-Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~ 207 (406)
....++.+ +|+ |. +.... ..|+.+|.++++.+.+... .+ ......+.+||+ |.++.+.
T Consensus 204 v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~g----~~~~~~~SPDG~~la~~~~~----------- 266 (435)
T PRK05137 204 VLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNF-PG----MTFAPRFSPDGRKVVMSLSQ----------- 266 (435)
T ss_pred eEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-CC----cccCcEECCCCCEEEEEEec-----------
Confidence 34567888 554 43 33222 3699999998876655322 11 233567889995 5555421
Q ss_pred cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCc
Q 015463 208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAG 285 (406)
Q Consensus 208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~ 285 (406)
.+...|+.+|.++++.+.+..........+++||++.++++... ...|+++++++...
T Consensus 267 -------------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~- 326 (435)
T PRK05137 267 -------------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP- 326 (435)
T ss_pred -------------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-
Confidence 11246999999988887765543334567899999988776543 24788888765322
Q ss_pred ceeeeecCCCCCCceEECCCCCEE
Q 015463 286 NLEAFAILPGYPDNVRTNEKGEFW 309 (406)
Q Consensus 286 ~~~~~~~l~g~pd~i~~d~~G~lw 309 (406)
+.+....+.-.....+++|+..
T Consensus 327 --~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 327 --RRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred --EEeecCCCcccCeEECCCCCEE
Confidence 2222112222345677888743
No 48
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.11 E-value=2.4e-05 Score=59.02 Aligned_cols=53 Identities=25% Similarity=0.419 Sum_probs=46.3
Q ss_pred cCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 226 TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 226 ~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+.+.|.++.||++ +.+++++++.+||||++++|++.+||++..++.|..|...
T Consensus 32 ~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 32 GLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred cCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3445779999985 6788899999999999999999999999999999999764
No 49
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.07 E-value=0.00079 Score=63.40 Aligned_cols=194 Identities=16% Similarity=0.214 Sum_probs=106.3
Q ss_pred ceEEEcCCCCeeEEEecC------------CEEEEEeCC--ce-eEEEeecCCCccccCCCCCcccccccCCcCCcceEE
Q 015463 72 ESMAFDPLGRGPYTGVAD------------GRILFWDGL--KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL 136 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~------------g~I~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 136 (406)
-++.+|+.|++|.+.+.. -+|+.+|.. ++ +.+..... ..........+
T Consensus 4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~-----------------~~~~~s~lndl 66 (287)
T PF03022_consen 4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPD-----------------IAPPDSFLNDL 66 (287)
T ss_dssp EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CC-----------------CS-TCGGEEEE
T ss_pred cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChH-----------------HcccccccceE
Confidence 467888888843344331 378999876 32 33322211 11123445678
Q ss_pred EEeCCC-----CcEEEEeCC-CcEEEEeCCCCeEEEccccc------------CCcccc---cccceEEcC---CC-CEE
Q 015463 137 RFDKKT-----GDLYIADAY-FGLMKVGPEGGLATSLATEA------------EGVPLR---FTNDLDIDD---EG-NVY 191 (406)
Q Consensus 137 ~~d~~~-----g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~------------~~~~~~---~~~~l~~d~---dG-~ly 191 (406)
++|..+ +..||+|.. .||..+|..+++...+.... .+..+. .+.+++..+ +| .+|
T Consensus 67 ~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LY 146 (287)
T PF03022_consen 67 VVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLY 146 (287)
T ss_dssp EEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEE
T ss_pred EEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEE
Confidence 888632 468999997 68999999998876654321 111111 122334332 32 466
Q ss_pred EEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCC-------------CCeEEEecccCCCcceEEEe
Q 015463 192 FTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT-------------TKQTTVLLRNLQFPNGLSLS 258 (406)
Q Consensus 192 ~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~-------------t~~~~~~~~~~~~~ngi~l~ 258 (406)
+...++ ..+|+...+ ..+++.+.+......|++++
T Consensus 147 f~~lss--------------------------------~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 147 FHPLSS--------------------------------RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEETT---------------------------------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred EEeCCC--------------------------------CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 654321 123333211 01122222222355789999
Q ss_pred cCCCEEEEEeCCCCeEEEEEeeCCCC-cceeeee-c-C-CCCCCceEECC--CCCEEEEEccC
Q 015463 259 KDKSFFVFCEGSVGRLHKYWLIGEKA-GNLEAFA-I-L-PGYPDNVRTNE--KGEFWVAIHCR 315 (406)
Q Consensus 259 ~d~~~l~v~~t~~~~i~~~~~~g~~~-~~~~~~~-~-l-~g~pd~i~~d~--~G~lwv~~~~~ 315 (406)
++| .+|+++-..+.|.+++..++-. .+.+++. + . --+|+++.++. +|.||+..+.-
T Consensus 195 ~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl 256 (287)
T PF03022_consen 195 PNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRL 256 (287)
T ss_dssp TTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S-
T ss_pred CCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcc
Confidence 866 6999999999999999876422 2445554 2 1 35799999999 99999998653
No 50
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.07 E-value=0.00012 Score=74.68 Aligned_cols=144 Identities=18% Similarity=0.268 Sum_probs=99.3
Q ss_pred CcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhcccccc
Q 015463 131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~ 208 (406)
.-|.||.||-.+..+|-.|.. ..|-+-..++++-+.+... .+..|.+|++|--+ +||++|+.
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~----~L~SPEGiAVDh~~Rn~ywtDS~------------ 1088 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNS----GLISPEGIAVDHIRRNMYWTDSV------------ 1088 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccccCCCCceeecc----cCCCccceeeeeccceeeeeccc------------
Confidence 337899998745556666654 5577777777665554332 35678999999765 89999973
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEE-ecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCc
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAG 285 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~ 285 (406)
++-+| +-.+|.+ +.++ +.+++-+|.+|++++=+..|||++..+ -.|-+.+++|.
T Consensus 1089 ---lD~Ie---------------vA~LdG~--~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~--- 1145 (1289)
T KOG1214|consen 1089 ---LDKIE---------------VALLDGS--ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGE--- 1145 (1289)
T ss_pred ---cchhh---------------eeecCCc--eeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCc---
Confidence 33333 5555543 3333 357889999999999888999998643 35777777763
Q ss_pred ceeeee-cCCCCCCceEECCCCC--EEEEEc
Q 015463 286 NLEAFA-ILPGYPDNVRTNEKGE--FWVAIH 313 (406)
Q Consensus 286 ~~~~~~-~l~g~pd~i~~d~~G~--lwv~~~ 313 (406)
+.++|+ +.-|+|+|+.+|+.-+ -||-..
T Consensus 1146 NrRilin~DigLPNGLtfdpfs~~LCWvDAG 1176 (1289)
T KOG1214|consen 1146 NRRILINTDIGLPNGLTFDPFSKLLCWVDAG 1176 (1289)
T ss_pred cceEEeecccCCCCCceeCcccceeeEEecC
Confidence 346776 4568999999998776 477543
No 51
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.07 E-value=0.0035 Score=62.67 Aligned_cols=175 Identities=11% Similarity=0.091 Sum_probs=99.5
Q ss_pred ceEEEcCCCCee-EEEecC--CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cE
Q 015463 72 ESMAFDPLGRGP-YTGVAD--GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DL 145 (406)
Q Consensus 72 e~i~~d~~g~~l-y~g~~~--g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L 145 (406)
.+..++++|+.| |+...+ ..|+.++.+ ..+.+... .+......+++ +| .|
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-----------------------~g~~~~~~~Sp-DG~~l 257 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-----------------------EGLNGAPAWSP-DGSKL 257 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-----------------------CCCcCCeEECC-CCCEE
Confidence 556788898855 554333 357777765 22222110 11122357787 55 45
Q ss_pred EEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCC
Q 015463 146 YIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221 (406)
Q Consensus 146 ~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 221 (406)
++.... ..|+.+|.++++.+.+.... + ......+.+||+ |+++...
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~----~~~~~~~spDg~~i~f~s~~------------------------- 307 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHP-A----IDTEPFWGKDGRTLYFTSDR------------------------- 307 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCC-C----CcCCeEECCCCCEEEEEECC-------------------------
Confidence 544332 24999999988876654321 1 123456788885 6666421
Q ss_pred CCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecCCCCCCc
Q 015463 222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDN 299 (406)
Q Consensus 222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l~g~pd~ 299 (406)
.+...|+.+|..+++.+.+..........+++||++.++++.... ..|+.+++++. ..+.+.+. +....
T Consensus 308 -----~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg---~~~~lt~~-~~~~~ 378 (430)
T PRK00178 308 -----GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG---SVRILTDT-SLDES 378 (430)
T ss_pred -----CCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC---CEEEccCC-CCCCC
Confidence 112469999988888766643322333467899999998876533 35778887642 22333221 12233
Q ss_pred eEECCCCCEE
Q 015463 300 VRTNEKGEFW 309 (406)
Q Consensus 300 i~~d~~G~lw 309 (406)
..++++|+..
T Consensus 379 p~~spdg~~i 388 (430)
T PRK00178 379 PSVAPNGTML 388 (430)
T ss_pred ceECCCCCEE
Confidence 4677888743
No 52
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.04 E-value=0.0046 Score=61.35 Aligned_cols=173 Identities=16% Similarity=0.137 Sum_probs=98.6
Q ss_pred eEEEcCCCCeeEEEecC---CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463 73 SMAFDPLGRGPYTGVAD---GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI 147 (406)
Q Consensus 73 ~i~~d~~g~~ly~g~~~---g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V 147 (406)
+..++++|+.++..+.. ..|+.++.. ..+.+... .+....+++.+++..|++
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-----------------------~~~~~~~~~spDg~~l~~ 250 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-----------------------PGMNGAPAFSPDGSKLAV 250 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-----------------------CCCccceEECCCCCEEEE
Confidence 45678888855544432 468888765 22222110 122334678883334665
Q ss_pred EeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463 148 ADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI 223 (406)
Q Consensus 148 ad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 223 (406)
+... ..|+.++.+++..+.+.... + ......+.+||. |+++...
T Consensus 251 ~~~~~~~~~i~~~d~~~~~~~~l~~~~-~----~~~~~~~s~dg~~l~~~s~~--------------------------- 298 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGKQLTRLTNGP-G----IDTEPSWSPDGKSIAFTSDR--------------------------- 298 (417)
T ss_pred EECCCCCccEEEEECCCCCEEECCCCC-C----CCCCEEECCCCCEEEEEECC---------------------------
Confidence 5433 24999999888766654321 1 122346677885 5554321
Q ss_pred cccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecCCCCCCceE
Q 015463 224 KITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVR 301 (406)
Q Consensus 224 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~ 301 (406)
.....|+.+|..+++.+.+.........+++++|++.++++.... .+|+.+++.+ +..+.+.. .+......
T Consensus 299 ---~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~---~~~~~l~~-~~~~~~p~ 371 (417)
T TIGR02800 299 ---GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG---GGERVLTD-TGLDESPS 371 (417)
T ss_pred ---CCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC---CCeEEccC-CCCCCCce
Confidence 112369999998887766654444455678999999888876543 3688888764 22233221 11223345
Q ss_pred ECCCCC
Q 015463 302 TNEKGE 307 (406)
Q Consensus 302 ~d~~G~ 307 (406)
+.++|+
T Consensus 372 ~spdg~ 377 (417)
T TIGR02800 372 FAPNGR 377 (417)
T ss_pred ECCCCC
Confidence 667776
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.03 E-value=0.0058 Score=60.40 Aligned_cols=179 Identities=15% Similarity=0.042 Sum_probs=96.5
Q ss_pred CCcEEEEeCCCcEEEEeCCCCeEEE-c--ccccCCcccccc----cceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463 142 TGDLYIADAYFGLMKVGPEGGLATS-L--ATEAEGVPLRFT----NDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC 214 (406)
Q Consensus 142 ~g~L~Vad~~~gl~~~d~~~~~~~~-l--~~~~~~~~~~~~----~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~ 214 (406)
++.++++...+.++.+|.++|+..- . ........+... ..-++. +|.+|+++..
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~-~~~vy~~~~~------------------ 265 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV-GGVVYALAYN------------------ 265 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE-CCEEEEEEcC------------------
Confidence 4668887766778888888775321 1 000000000000 111222 5788887642
Q ss_pred ccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-c-
Q 015463 215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-I- 292 (406)
Q Consensus 215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~- 292 (406)
|.++.+|+++|+..- ...+..+..+++ +++.+|+... .++++.++.+.. + +++. +
T Consensus 266 ---------------g~l~ald~~tG~~~W-~~~~~~~~~~~~--~~~~vy~~~~-~g~l~ald~~tG---~-~~W~~~~ 322 (394)
T PRK11138 266 ---------------GNLVALDLRSGQIVW-KREYGSVNDFAV--DGGRIYLVDQ-NDRVYALDTRGG---V-ELWSQSD 322 (394)
T ss_pred ---------------CeEEEEECCCCCEEE-eecCCCccCcEE--ECCEEEEEcC-CCeEEEEECCCC---c-EEEcccc
Confidence 789999999986532 222222223333 4556777754 578988887532 1 1221 1
Q ss_pred CCC-CCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECC-CCCEEEEEE
Q 015463 293 LPG-YPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSP-EGKILQVLE 370 (406)
Q Consensus 293 l~g-~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~ 370 (406)
+.+ .....++ .+|.+|++...+ .++++|+ +|+++..+.
T Consensus 323 ~~~~~~~sp~v-~~g~l~v~~~~G---------------------------------------~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 323 LLHRLLTAPVL-YNGYLVVGDSEG---------------------------------------YLHWINREDGRFVAQQK 362 (394)
T ss_pred cCCCcccCCEE-ECCEEEEEeCCC---------------------------------------EEEEEECCCCCEEEEEE
Confidence 111 1111222 357788876544 2666775 588887765
Q ss_pred CCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeCC
Q 015463 371 DSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 406 (406)
Q Consensus 371 ~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~~ 406 (406)
-..+. ..+.-...+++||+++. +..|..++++
T Consensus 363 ~~~~~---~~s~P~~~~~~l~v~t~-~G~l~~~~~~ 394 (394)
T PRK11138 363 VDSSG---FLSEPVVADDKLLIQAR-DGTVYAITRP 394 (394)
T ss_pred cCCCc---ceeCCEEECCEEEEEeC-CceEEEEeCC
Confidence 32222 12233346889999987 5567777653
No 54
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.02 E-value=0.0044 Score=56.23 Aligned_cols=200 Identities=11% Similarity=0.097 Sum_probs=122.0
Q ss_pred ccccccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcce
Q 015463 55 NLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL 134 (406)
Q Consensus 55 ~~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 134 (406)
..+-++.+.+.|.-+.-++++..++|+..+.++.|+.+..||...-+..... | ......+
T Consensus 50 ~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-------~-------------GH~~dVl 109 (315)
T KOG0279|consen 50 IKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-------V-------------GHTKDVL 109 (315)
T ss_pred cccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-------E-------------ecCCceE
Confidence 3444555666666667788899999998888999999999997621111111 1 1123478
Q ss_pred EEEEeCCCCcEEEEeC-CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhcccccccccc
Q 015463 135 GLRFDKKTGDLYIADA-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQ 212 (406)
Q Consensus 135 gi~~d~~~g~L~Vad~-~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~ 212 (406)
+++|++ +.+..|.-+ .+.|..++..+...-.+... + .-..++.+.+.|+- +.++...+
T Consensus 110 sva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~--~-~~~WVscvrfsP~~~~p~Ivs~s---------------- 169 (315)
T KOG0279|consen 110 SVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHED--S-HREWVSCVRFSPNESNPIIVSAS---------------- 169 (315)
T ss_pred EEEecC-CCceeecCCCcceeeeeeecccEEEEEecC--C-CcCcEEEEEEcCCCCCcEEEEcc----------------
Confidence 999999 566555544 46788888876644333222 1 13578889998874 55554432
Q ss_pred ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee
Q 015463 213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA 291 (406)
Q Consensus 213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~ 291 (406)
.++.|-.+|.++-+.+.-. ..-...|-+++||||. +..+.-..+.++.+++...+. .+.
T Consensus 170 ---------------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~----lys 229 (315)
T KOG0279|consen 170 ---------------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN----LYS 229 (315)
T ss_pred ---------------CCceEEEEccCCcchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce----eEe
Confidence 2466777888766554432 2234457899999997 445544456777777763211 111
Q ss_pred cCCC--CCCceEECCCCCEEEEEccCC
Q 015463 292 ILPG--YPDNVRTNEKGEFWVAIHCRR 316 (406)
Q Consensus 292 ~l~g--~pd~i~~d~~G~lwv~~~~~~ 316 (406)
+.+ .-..+++.++ ++|++...+.
T Consensus 230 -l~a~~~v~sl~fspn-rywL~~at~~ 254 (315)
T KOG0279|consen 230 -LEAFDIVNSLCFSPN-RYWLCAATAT 254 (315)
T ss_pred -ccCCCeEeeEEecCC-ceeEeeccCC
Confidence 111 1245677664 6888865543
No 55
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.02 E-value=0.0056 Score=56.33 Aligned_cols=192 Identities=12% Similarity=0.138 Sum_probs=105.8
Q ss_pred ccCcceEEEcCCCCeeEEEecC-CEEEEEeCC-c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463 68 IQGPESMAFDPLGRGPYTGVAD-GRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (406)
Q Consensus 68 ~~gpe~i~~d~~g~~ly~g~~~-g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~ 144 (406)
...-.++.++++-+.||+-+.. -.|+.++.+ . ...+... ....|-+|..-. +|.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~----------------------g~~DpE~Ieyig-~n~ 141 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT----------------------GFSDPETIEYIG-GNQ 141 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc----------------------ccCChhHeEEec-CCE
Confidence 3456889999998878876544 467777665 2 2222111 123466677664 455
Q ss_pred EEEEeCC-CcE--EEEeCCCCeEEEcc----cccCCcccccccceEEcCC-CCEEEEeCCCchhhhcccccccccccccc
Q 015463 145 LYIADAY-FGL--MKVGPEGGLATSLA----TEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQLCSS 216 (406)
Q Consensus 145 L~Vad~~-~gl--~~~d~~~~~~~~l~----~~~~~~~~~~~~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~~e 216 (406)
.-|++.. +.+ +.+|+++.....-. -...........+++.|+. +++|++-.
T Consensus 142 fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE--------------------- 200 (316)
T COG3204 142 FVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE--------------------- 200 (316)
T ss_pred EEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc---------------------
Confidence 5555554 334 45566554322111 0111122445678999985 57888752
Q ss_pred CCCCCCCcccCCCCeEEEEeCCCCeEEEeccc---------CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcce
Q 015463 217 LNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN---------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNL 287 (406)
Q Consensus 217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~---------~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~ 287 (406)
..+ -+|+.++............ +....|+.+.+..+.++|-......+..++.+|.-.+..
T Consensus 201 ---------r~P-~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~l 270 (316)
T COG3204 201 ---------RNP-IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELL 270 (316)
T ss_pred ---------cCC-cEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeE
Confidence 111 2366665433222111100 122346777766677777777777888888876421111
Q ss_pred ee-------eecCCCCCCceEECCCCCEEEEEcc
Q 015463 288 EA-------FAILPGYPDNVRTNEKGEFWVAIHC 314 (406)
Q Consensus 288 ~~-------~~~l~g~pd~i~~d~~G~lwv~~~~ 314 (406)
.. -.+.|+ +.||+.|.+|+|||..-.
T Consensus 271 sL~~g~~gL~~dipq-aEGiamDd~g~lYIvSEP 303 (316)
T COG3204 271 SLTKGNHGLSSDIPQ-AEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred EeccCCCCCcccCCC-cceeEECCCCCEEEEecC
Confidence 11 112233 679999999999998743
No 56
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.01 E-value=5.8e-05 Score=66.67 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=57.3
Q ss_pred CcceEEEEeCCCCcEEEEeCC-CcE--EEEeCCCCeEEE---cccccC--CcccccccceEEcCCCCEEEEeCCCchhhh
Q 015463 131 GRPLGLRFDKKTGDLYIADAY-FGL--MKVGPEGGLATS---LATEAE--GVPLRFTNDLDIDDEGNVYFTDSSTNYQRR 202 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~-~gl--~~~d~~~~~~~~---l~~~~~--~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~ 202 (406)
+-++||+.|.+...+|+.|+. ..+ +.+|..||.+.. +..... ......|.++++|.+|+||+++.+
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n------ 231 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN------ 231 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec------
Confidence 457899999866788988876 467 566677775422 111111 112236899999999999999975
Q ss_pred ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeE
Q 015463 203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQT 242 (406)
Q Consensus 203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~ 242 (406)
.|+++++||.||+.
T Consensus 232 --------------------------g~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 232 --------------------------GGTVQKVDPTTGKI 245 (310)
T ss_pred --------------------------CcEEEEECCCCCcE
Confidence 37899999999975
No 57
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.01 E-value=0.0039 Score=62.53 Aligned_cols=174 Identities=11% Similarity=0.078 Sum_probs=102.1
Q ss_pred ceEEEcCCCCee-EEEec--CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-E
Q 015463 72 ESMAFDPLGRGP-YTGVA--DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-L 145 (406)
Q Consensus 72 e~i~~d~~g~~l-y~g~~--~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L 145 (406)
.++.+.+||+.| |+... +..|+.++.. ..+.+... .+.....++++ +|+ |
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-----------------------~g~~~~~~~SP-DG~~l 260 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-----------------------PGMTFAPRFSP-DGRKV 260 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-----------------------CCcccCcEECC-CCCEE
Confidence 456788999854 44332 3578888865 22222211 11223456787 554 5
Q ss_pred EEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCC
Q 015463 146 YIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221 (406)
Q Consensus 146 ~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 221 (406)
.++... ..|+.+|.+++..+.+.... + ........+||+ |+++...
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-~----~~~~~~~spDG~~i~f~s~~------------------------- 310 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTTRLTDSP-A----IDTSPSYSPDGSQIVFESDR------------------------- 310 (435)
T ss_pred EEEEecCCCceEEEEECCCCceEEccCCC-C----ccCceeEcCCCCEEEEEECC-------------------------
Confidence 444332 34999999988877664321 1 233467888985 6655421
Q ss_pred CCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecCCCCCCc
Q 015463 222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDN 299 (406)
Q Consensus 222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l~g~pd~ 299 (406)
.+...|+.+|.++++.+.+..........+++||++.++++.... .+|+.+++++. ....+.. ......
T Consensus 311 -----~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~---~~~~lt~-~~~~~~ 381 (435)
T PRK05137 311 -----SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS---GERILTS-GFLVEG 381 (435)
T ss_pred -----CCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC---ceEeccC-CCCCCC
Confidence 112469999998887776654322334578999999988775432 46888887542 2222222 122345
Q ss_pred eEECCCCCE
Q 015463 300 VRTNEKGEF 308 (406)
Q Consensus 300 i~~d~~G~l 308 (406)
..+++||+.
T Consensus 382 p~~spDG~~ 390 (435)
T PRK05137 382 PTWAPNGRV 390 (435)
T ss_pred CeECCCCCE
Confidence 677888884
No 58
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.00 E-value=0.00025 Score=67.48 Aligned_cols=223 Identities=23% Similarity=0.288 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHhCcCCCCCCccCCCCCceeeeecCCCCCCCCCCCcccccccccceeccC-cccCcceEEEcCCCCeeE
Q 015463 6 FLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLN-QIQGPESMAFDPLGRGPY 84 (406)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~gpe~i~~d~~g~~ly 84 (406)
++..+++++++++.+..+..+.+...+++. ..+..+..++..+++.+..+|.+..+ +..||+.++.| +..++|
T Consensus 7 ~~~~i~~~~~~~~~l~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~E~~~fd~~~~gp~~~v~d-g~il~~ 80 (376)
T KOG1520|consen 7 LFLFIFLFLAVIILLYLLSGSSIAGSPDDR-----LFSKLPLLGKLIPNNHLTGPESLLFDPQGGGPYTGVVD-GRILKY 80 (376)
T ss_pred hhHHHHHHHHHHHhhhccCcccccCCchhc-----ccCCCCcccccccccccCChhhheecccCCCceEEEEC-CceEEE
Confidence 444444555666666656665554443332 11122233456777767666655544 44555555543 333589
Q ss_pred EEecCCEEEEEeCC------ceeE--EEeecCCCccccCC---------------------------CCCcccccccCCc
Q 015463 85 TGVADGRILFWDGL------KWTD--FAFTSNNRSELCNP---------------------------KPIATSYLKNEHI 129 (406)
Q Consensus 85 ~g~~~g~I~~~~~~------~~~~--~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~ 129 (406)
+|...|.+.+.+.. .... .... ...|.- .+..+.. .....
T Consensus 81 ~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~----e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~-l~~~~ 155 (376)
T KOG1520|consen 81 TGNDDGWVKFADTKDSTNRSQCCDPGSFET----EPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAEL-LADEA 155 (376)
T ss_pred eccCceEEEEEeccccccccccCCCcceec----ccccCCcceEEeccCCCeEEEEecceeeEEECCCCCccee-ccccc
Confidence 99999988887652 0000 0000 001210 0000000 01123
Q ss_pred CCcc----eEEEEeCCCCcEEEEeCC------------------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCC
Q 015463 130 CGRP----LGLRFDKKTGDLYIADAY------------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE 187 (406)
Q Consensus 130 ~~~p----~gi~~d~~~g~L~Vad~~------------------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~d 187 (406)
.|+| .++.+++ +|.+|..|+. +++++||+.++..+++.. .+.++|+++..+|
T Consensus 156 ~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld-----~L~F~NGlaLS~d 229 (376)
T KOG1520|consen 156 EGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD-----GLYFPNGLALSPD 229 (376)
T ss_pred cCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhh-----cccccccccCCCC
Confidence 4555 3677887 8999998753 248888888776666543 3678999999999
Q ss_pred CCEEEE-eCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC---eEEEecccC-CCcceEEEecCCC
Q 015463 188 GNVYFT-DSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK---QTTVLLRNL-QFPNGLSLSKDKS 262 (406)
Q Consensus 188 G~ly~t-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~---~~~~~~~~~-~~~ngi~l~~d~~ 262 (406)
+...+. ..+ ..++.+|-.+.. +.+++.+++ .+|..|..+++|+
T Consensus 230 ~sfvl~~Et~--------------------------------~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~ 277 (376)
T KOG1520|consen 230 GSFVLVAETT--------------------------------TARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGH 277 (376)
T ss_pred CCEEEEEeec--------------------------------cceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCC
Confidence 965544 332 346666655443 347777755 4678888888887
Q ss_pred EEEEEeCCCCeEEEE
Q 015463 263 FFVFCEGSVGRLHKY 277 (406)
Q Consensus 263 ~l~v~~t~~~~i~~~ 277 (406)
+.+-..+.+..++++
T Consensus 278 fWVal~~~~~~~~~~ 292 (376)
T KOG1520|consen 278 FWVALHSKRSTLWRL 292 (376)
T ss_pred EEEEEecccchHHHh
Confidence 543333333334443
No 59
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.99 E-value=0.0013 Score=60.13 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=95.7
Q ss_pred CcceEEEcCCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463 70 GPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va 148 (406)
.-|+|+.-. +. +|.-|+ ++..+.+|.+.++.+.... . .+.-+||+.| +..||++
T Consensus 91 FgEGit~~~-d~-l~qLTWk~~~~f~yd~~tl~~~~~~~------------------y---~~EGWGLt~d--g~~Li~S 145 (264)
T PF05096_consen 91 FGEGITILG-DK-LYQLTWKEGTGFVYDPNTLKKIGTFP------------------Y---PGEGWGLTSD--GKRLIMS 145 (264)
T ss_dssp -EEEEEEET-TE-EEEEESSSSEEEEEETTTTEEEEEEE----------------------SSS--EEEEC--SSCEEEE
T ss_pred cceeEEEEC-CE-EEEEEecCCeEEEEccccceEEEEEe------------------c---CCcceEEEcC--CCEEEEE
Confidence 457887752 33 776655 5777888887443332211 0 1345899976 5789999
Q ss_pred eCCCcEEEEeCCCCeE-EEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463 149 DAYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227 (406)
Q Consensus 149 d~~~gl~~~d~~~~~~-~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 227 (406)
|....|+.+||++-+. +.+.....+.+....|.|..- +|.||.-.+.
T Consensus 146 DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~------------------------------- 193 (264)
T PF05096_consen 146 DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ------------------------------- 193 (264)
T ss_dssp -SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT-------------------------------
T ss_pred CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC-------------------------------
Confidence 9889999999986433 233333467778888888876 7999987653
Q ss_pred CCCeEEEEeCCCCeEEEecc--c--------------CCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463 228 DTGRVLKYDPTTKQTTVLLR--N--------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 279 (406)
Q Consensus 228 ~~g~l~~~d~~t~~~~~~~~--~--------------~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~ 279 (406)
+..|+++||+||++....+ + ..-.||||.+++.+.+|++.-.=..++.+.+
T Consensus 194 -td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 194 -TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp -SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred -CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 2579999999999876531 1 1225899999999999997643345666554
No 60
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.0068 Score=60.64 Aligned_cols=137 Identities=12% Similarity=0.103 Sum_probs=81.9
Q ss_pred EEEEeCCCCc-EEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccc
Q 015463 135 GLRFDKKTGD-LYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENI 209 (406)
Q Consensus 135 gi~~d~~~g~-L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~ 209 (406)
...+++ +|+ |+++... ..|+.+|.++++.+.+.... .........+||+ |+++...
T Consensus 247 ~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-----~~~~~~~wSPDG~~I~f~s~~------------- 307 (429)
T PRK03629 247 APAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-----SNNTEPTWFPDSQNLAYTSDQ------------- 307 (429)
T ss_pred CeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-----CCcCceEECCCCCEEEEEeCC-------------
Confidence 357888 554 5554332 24999999988777654321 1234668889996 5554321
Q ss_pred cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcce
Q 015463 210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNL 287 (406)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~ 287 (406)
.+.-.||.+|.++++.+.+..........+++||++.++++.... ..|+.+++++. ..
T Consensus 308 -----------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g---~~ 367 (429)
T PRK03629 308 -----------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GV 367 (429)
T ss_pred -----------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC---Ce
Confidence 012369999998887766643333344678999999987765432 45777877643 22
Q ss_pred eeeecCCCCCCceEECCCCCEEEE
Q 015463 288 EAFAILPGYPDNVRTNEKGEFWVA 311 (406)
Q Consensus 288 ~~~~~l~g~pd~i~~d~~G~lwv~ 311 (406)
+.+.. ...-.+..+++||+..+.
T Consensus 368 ~~Lt~-~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 368 QVLTD-TFLDETPSIAPNGTMVIY 390 (429)
T ss_pred EEeCC-CCCCCCceECCCCCEEEE
Confidence 33322 111224567788884443
No 61
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.011 Score=58.98 Aligned_cols=171 Identities=11% Similarity=0.077 Sum_probs=97.5
Q ss_pred eEEEcCCCC-eeEE-Eec--CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463 73 SMAFDPLGR-GPYT-GVA--DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (406)
Q Consensus 73 ~i~~d~~g~-~ly~-g~~--~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~ 146 (406)
+..+.++|+ ++|. ... ...|+.++.. +.+.+... .+......+++++..|.
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-----------------------~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-----------------------QGMLVVSDVSKDGSKLL 248 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-----------------------CCcEEeeEECCCCCEEE
Confidence 456788887 3554 333 2468888765 23333211 11122235677333455
Q ss_pred EEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463 147 IADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP 222 (406)
Q Consensus 147 Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 222 (406)
+.... ..|+.++.+++..+.+... .+. -....+.+|| .|+|+...
T Consensus 249 ~~~~~~g~~~Iy~~dl~~g~~~~LT~~-~~~----d~~p~~SPDG~~I~F~Sdr-------------------------- 297 (419)
T PRK04043 249 LTMAPKGQPDIYLYDTNTKTLTQITNY-PGI----DVNGNFVEDDKRIVFVSDR-------------------------- 297 (419)
T ss_pred EEEccCCCcEEEEEECCCCcEEEcccC-CCc----cCccEECCCCCEEEEEECC--------------------------
Confidence 44332 3599999988877766432 111 1123678899 58887632
Q ss_pred CcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--------CeEEEEEeeCCCCcceeeeecCC
Q 015463 223 IKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--------GRLHKYWLIGEKAGNLEAFAILP 294 (406)
Q Consensus 223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--------~~i~~~~~~g~~~~~~~~~~~l~ 294 (406)
.+...||++|.++++.+.+..... .+ .+++||++.+.++.... .+|+.+++++. ..+.+.. .
T Consensus 298 ----~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g---~~~~LT~-~ 367 (419)
T PRK04043 298 ----LGYPNIFMKKLNSGSVEQVVFHGK-NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD---YIRRLTA-N 367 (419)
T ss_pred ----CCCceEEEEECCCCCeEeCccCCC-cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC---CeEECCC-C
Confidence 112469999999998876653211 12 47999999887775432 47888887643 2233322 1
Q ss_pred CCCCceEECCCCC
Q 015463 295 GYPDNVRTNEKGE 307 (406)
Q Consensus 295 g~pd~i~~d~~G~ 307 (406)
+.-.....++||+
T Consensus 368 ~~~~~p~~SPDG~ 380 (419)
T PRK04043 368 GVNQFPRFSSDGG 380 (419)
T ss_pred CCcCCeEECCCCC
Confidence 2222356778887
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.93 E-value=0.006 Score=59.83 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=37.6
Q ss_pred CCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEEe
Q 015463 80 GRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVG 158 (406)
Q Consensus 80 g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d 158 (406)
++.+|+++.+|.++.+|.+ +-......... .....| .+. ++.++++...+.|+.+|
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------------------~~~~~p---~v~--~~~v~v~~~~g~l~a~d 161 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS------------------EVLSPP---LVA--NGLVVVRTNDGRLTALD 161 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCc------------------eeecCC---EEE--CCEEEEECCCCeEEEEE
Confidence 3448999999999999975 21111111000 001112 223 57888887777799999
Q ss_pred CCCCeE
Q 015463 159 PEGGLA 164 (406)
Q Consensus 159 ~~~~~~ 164 (406)
+++|+.
T Consensus 162 ~~tG~~ 167 (377)
T TIGR03300 162 AATGER 167 (377)
T ss_pred cCCCce
Confidence 988764
No 63
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.85 E-value=0.0079 Score=60.19 Aligned_cols=174 Identities=16% Similarity=0.162 Sum_probs=98.6
Q ss_pred cceEEEcCCCCeeEEEecC---CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-
Q 015463 71 PESMAFDPLGRGPYTGVAD---GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD- 144 (406)
Q Consensus 71 pe~i~~d~~g~~ly~g~~~---g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~- 144 (406)
-.++.++++|+.+...+.+ ..|+.++.. ..+.+... .+....+++++ +|+
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-----------------------~g~~~~~~wSP-DG~~ 261 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-----------------------RGHNGAPAFSP-DGSR 261 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-----------------------CCccCceeECC-CCCE
Confidence 3567899999855443332 368888765 22222111 01112457888 564
Q ss_pred EEEEeCCC---cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCC
Q 015463 145 LYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDP 220 (406)
Q Consensus 145 L~Vad~~~---gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~ 220 (406)
|.++.... .|+.+|.+++..+.+... . .........+||. |+++...
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~----~~~~~~~wSpDG~~i~f~s~~------------------------ 312 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQLTSG-A----GNNTEPSWSPDGQSILFTSDR------------------------ 312 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEeeccC-C----CCcCCEEECCCCCEEEEEECC------------------------
Confidence 55543322 388899888876665432 1 1245678899996 6665421
Q ss_pred CCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCce
Q 015463 221 SPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV 300 (406)
Q Consensus 221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i 300 (406)
.+.-.|+.++..++..+.+. ... ...+++||++.++++.. .+++++++.+. ..+.+.. .......
T Consensus 313 ------~g~~~I~~~~~~~~~~~~l~-~~~--~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g---~~~~lt~-~~~~~~~ 377 (429)
T PRK01742 313 ------SGSPQVYRMSASGGGASLVG-GRG--YSAQISADGKTLVMING--DNVVKQDLTSG---STEVLSS-TFLDESP 377 (429)
T ss_pred ------CCCceEEEEECCCCCeEEec-CCC--CCccCCCCCCEEEEEcC--CCEEEEECCCC---CeEEecC-CCCCCCc
Confidence 11236888888766655442 211 34678999998877643 57888887532 2222211 1112345
Q ss_pred EECCCCCEEEEE
Q 015463 301 RTNEKGEFWVAI 312 (406)
Q Consensus 301 ~~d~~G~lwv~~ 312 (406)
.++++|+..+..
T Consensus 378 ~~sPdG~~i~~~ 389 (429)
T PRK01742 378 SISPNGIMIIYS 389 (429)
T ss_pred eECCCCCEEEEE
Confidence 678899865554
No 64
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.84 E-value=0.033 Score=55.75 Aligned_cols=139 Identities=12% Similarity=0.102 Sum_probs=84.6
Q ss_pred ceEEEEeCCCCc-EE-EEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccc
Q 015463 133 PLGLRFDKKTGD-LY-IADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKE 207 (406)
Q Consensus 133 p~gi~~d~~~g~-L~-Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~ 207 (406)
....++++ +|+ |. +.... ..|+.++.++++.+.+... .+ ....+.+.+||+ |+++.+.
T Consensus 201 ~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~----~~~~~~~SPDG~~La~~~~~----------- 263 (429)
T PRK03629 201 LMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR----HNGAPAFSPDGSKLAFALSK----------- 263 (429)
T ss_pred eeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC----CcCCeEECCCCCEEEEEEcC-----------
Confidence 34678888 564 43 33221 3589999988876655432 11 123578899995 6665431
Q ss_pred cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCc
Q 015463 208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAG 285 (406)
Q Consensus 208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~ 285 (406)
.+...|+.+|.++++.+.+..........+++||++.++++.... .+||++++++..
T Consensus 264 -------------------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-- 322 (429)
T PRK03629 264 -------------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-- 322 (429)
T ss_pred -------------------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--
Confidence 112359999999888887765544455788999999886664422 378888876432
Q ss_pred ceeeeecCCCCCCceEECCCCCEEE
Q 015463 286 NLEAFAILPGYPDNVRTNEKGEFWV 310 (406)
Q Consensus 286 ~~~~~~~l~g~pd~i~~d~~G~lwv 310 (406)
.+.+....+.......++||+..+
T Consensus 323 -~~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 323 -PQRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred -eEEeecCCCCccCEEECCCCCEEE
Confidence 222222222234566788887443
No 65
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=0.012 Score=54.52 Aligned_cols=191 Identities=18% Similarity=0.254 Sum_probs=107.9
Q ss_pred ccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463 64 FLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK 140 (406)
Q Consensus 64 ~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~ 140 (406)
+.+....-.|++++++|+.|.+++.|..|..||.. -...+...+ ..++..+.+
T Consensus 61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~s------------------------pv~~~q~hp 116 (405)
T KOG1273|consen 61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDS------------------------PVWGAQWHP 116 (405)
T ss_pred hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccC------------------------ccceeeecc
Confidence 34455556899999999999999999999988854 222332211 124555655
Q ss_pred CCCcEEEEeCCC---cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463 141 KTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL 217 (406)
Q Consensus 141 ~~g~L~Vad~~~---gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~ 217 (406)
.+.|..|+.--. -+..++. ++.+.|....++.....+....+|+.|++.++..
T Consensus 117 ~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt---------------------- 172 (405)
T KOG1273|consen 117 RKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT---------------------- 172 (405)
T ss_pred ccCCeEEEEEecCCcEEEEecC--CceeeccCCCccccccccccccccCCCCEEEEec----------------------
Confidence 566777765432 2344443 3444554444443333455567888886555432
Q ss_pred CCCCCCcccCCCCeEEEEeCCCCeEEEecc--cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC---C-CCcceeee-
Q 015463 218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLR--NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG---E-KAGNLEAF- 290 (406)
Q Consensus 218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g---~-~~~~~~~~- 290 (406)
..|.++.||.+|-+...-.. ....-..|.++..++++.+ ++...-|..|+++. . +.+..+..
T Consensus 173 ----------sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii-NtsDRvIR~ye~~di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 173 ----------SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLII-NTSDRVIRTYEISDIDDEGRDGEVEPEH 241 (405)
T ss_pred ----------CcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEE-ecCCceEEEEehhhhcccCccCCcChhH
Confidence 24889999998765433221 1123345778888887755 45444555576552 1 22222211
Q ss_pred --ecC-CCCC-CceEECCCCCEEEEEc
Q 015463 291 --AIL-PGYP-DNVRTNEKGEFWVAIH 313 (406)
Q Consensus 291 --~~l-~g~p-d~i~~d~~G~lwv~~~ 313 (406)
.++ .-.+ .++.++.+|.+.+|..
T Consensus 242 K~qDvVNk~~Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDGEYVCAGS 268 (405)
T ss_pred HHHHHHhhhhhhheeecCCccEEEecc
Confidence 111 0111 3567888887666654
No 66
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=97.74 E-value=0.0028 Score=63.06 Aligned_cols=161 Identities=16% Similarity=0.254 Sum_probs=94.1
Q ss_pred CCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccc---cCCcccccccceEEcCC-------CCEEEEeCCCc
Q 015463 130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATE---AEGVPLRFTNDLDIDDE-------GNVYFTDSSTN 198 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~---~~~~~~~~~~~l~~d~d-------G~ly~t~~~~~ 198 (406)
...|.+|++.+ +|+|||+... +.|+++++.++..+.+... ........+.+|+++++ +.||++-+...
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 35699999999 8999999873 7799998876544332211 11111345678888754 46898853210
Q ss_pred hhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCC--CC---eEEEecccC-----CCcceEEEecCCCEEEEEe
Q 015463 199 YQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT--TK---QTTVLLRNL-----QFPNGLSLSKDKSFFVFCE 268 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~--t~---~~~~~~~~~-----~~~ngi~l~~d~~~l~v~~ 268 (406)
-. .. .....+|.|+..+ +. ..+++...+ ++...|++.+|+. ||++-
T Consensus 108 ~~-~~----------------------~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~ 163 (454)
T TIGR03606 108 GD-KE----------------------LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTI 163 (454)
T ss_pred CC-CC----------------------ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEE
Confidence 00 00 0012457666543 11 122333322 3344688999986 77742
Q ss_pred CC--------------------------------CCeEEEEEeeCCC--------CcceeeeecCCCCCCceEECCCCCE
Q 015463 269 GS--------------------------------VGRLHKYWLIGEK--------AGNLEAFAILPGYPDNVRTNEKGEF 308 (406)
Q Consensus 269 t~--------------------------------~~~i~~~~~~g~~--------~~~~~~~~~l~g~pd~i~~d~~G~l 308 (406)
-. .+.|+|++.+|.- ....++++-..--|-++++|++|.|
T Consensus 164 GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~L 243 (454)
T TIGR03606 164 GEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTL 243 (454)
T ss_pred CCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCE
Confidence 21 1368888887631 0123566532234788999999999
Q ss_pred EEEEccC
Q 015463 309 WVAIHCR 315 (406)
Q Consensus 309 wv~~~~~ 315 (406)
|++.+..
T Consensus 244 w~~e~Gp 250 (454)
T TIGR03606 244 YASEQGP 250 (454)
T ss_pred EEEecCC
Confidence 9997654
No 67
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.73 E-value=0.033 Score=55.83 Aligned_cols=137 Identities=14% Similarity=0.141 Sum_probs=82.5
Q ss_pred eEEEEeCCCCc-EEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccccc
Q 015463 134 LGLRFDKKTGD-LYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 134 ~gi~~d~~~g~-L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~ 208 (406)
.+.++++ +|+ |+.+... ..|+++|.++++.+.+... .+ ......+.+||+ |+++.+.
T Consensus 207 ~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-~g----~~~~~~~SpDG~~l~~~~s~------------ 268 (433)
T PRK04922 207 LSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVASF-RG----INGAPSFSPDGRRLALTLSR------------ 268 (433)
T ss_pred ccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-CC----CccCceECCCCCEEEEEEeC------------
Confidence 4567777 554 5544332 2499999988876655322 22 123568889995 6665432
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcc
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGN 286 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~ 286 (406)
.+...|+.+|.++++.+.+..........++++|++.++++.... ..|+.+++.+.+
T Consensus 269 ------------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--- 327 (433)
T PRK04922 269 ------------------DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--- 327 (433)
T ss_pred ------------------CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---
Confidence 112469999999888777654433334678999999887765432 358888876432
Q ss_pred eeeeecCCCCCCceEECCCCCEE
Q 015463 287 LEAFAILPGYPDNVRTNEKGEFW 309 (406)
Q Consensus 287 ~~~~~~l~g~pd~i~~d~~G~lw 309 (406)
.+.+............+++|+..
T Consensus 328 ~~~lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 328 AERLTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred eEEeecCCCCccCEEECCCCCEE
Confidence 22221111233356778888743
No 68
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.73 E-value=0.0094 Score=58.27 Aligned_cols=176 Identities=18% Similarity=0.226 Sum_probs=99.2
Q ss_pred CCeeEE-EecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcc-eEEEEeCCCCcEEEEeCCCcEEEE
Q 015463 80 GRGPYT-GVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIADAYFGLMKV 157 (406)
Q Consensus 80 g~~ly~-g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~d~~~g~L~Vad~~~gl~~~ 157 (406)
++++|+ ...+|.|..+|.+..+.+.... ..+.+ .++.+.+++..+||+...+.|..+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~---------------------~~~~~h~~~~~s~Dgr~~yv~~rdg~vsvi 63 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIP---------------------TGGAPHAGLKFSPDGRYLYVANRDGTVSVI 63 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE----------------------STTEEEEEE-TT-SSEEEEEETTSEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEc---------------------CCCCceeEEEecCCCCEEEEEcCCCeEEEE
Confidence 344444 4457889999987322222111 12233 457788833459999877789999
Q ss_pred eCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEe
Q 015463 158 GPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYD 236 (406)
Q Consensus 158 d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d 236 (406)
|+.++++..-. ..| ..+.++++.+||+ +|+++.. .+.+..+|
T Consensus 64 D~~~~~~v~~i--~~G---~~~~~i~~s~DG~~~~v~n~~--------------------------------~~~v~v~D 106 (369)
T PF02239_consen 64 DLATGKVVATI--KVG---GNPRGIAVSPDGKYVYVANYE--------------------------------PGTVSVID 106 (369)
T ss_dssp ETTSSSEEEEE--E-S---SEEEEEEE--TTTEEEEEEEE--------------------------------TTEEEEEE
T ss_pred ECCcccEEEEE--ecC---CCcceEEEcCCCCEEEEEecC--------------------------------CCceeEec
Confidence 99887643211 112 3477899999996 5555421 36799999
Q ss_pred CCCCeEEEeccc--C----C--CcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCE
Q 015463 237 PTTKQTTVLLRN--L----Q--FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEF 308 (406)
Q Consensus 237 ~~t~~~~~~~~~--~----~--~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~l 308 (406)
.+|.+....... . . ...+|.-++.+...+++-...++||.++....+.-. ....+..-+|.+..+|++|++
T Consensus 107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~-~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK-VTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE-EEEEE--TTEEEEEE-TTSSE
T ss_pred cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc-eeeecccccccccccCcccce
Confidence 888765433211 1 1 123666677777666666667899999866432111 122234456888899999996
Q ss_pred E-EEEcc
Q 015463 309 W-VAIHC 314 (406)
Q Consensus 309 w-v~~~~ 314 (406)
+ ++.+.
T Consensus 186 ~~va~~~ 192 (369)
T PF02239_consen 186 FLVAANG 192 (369)
T ss_dssp EEEEEGG
T ss_pred eeecccc
Confidence 5 54443
No 69
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.71 E-value=0.0051 Score=55.02 Aligned_cols=184 Identities=15% Similarity=0.131 Sum_probs=105.1
Q ss_pred eeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEEeCC
Q 015463 82 GPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPE 160 (406)
Q Consensus 82 ~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~ 160 (406)
+|.++.+|..|..|... +. |.. ...+..+..+.+.+.+ ++....+....-|..||..
T Consensus 12 iLvsA~YDhTIRfWqa~tG~-------------C~r--------Tiqh~dsqVNrLeiTp-dk~~LAaa~~qhvRlyD~~ 69 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGI-------------CSR--------TIQHPDSQVNRLEITP-DKKDLAAAGNQHVRLYDLN 69 (311)
T ss_pred EEEeccCcceeeeeehhcCe-------------EEE--------EEecCccceeeEEEcC-CcchhhhccCCeeEEEEcc
Confidence 46667888888888754 21 211 1222334456677787 5555555455668888877
Q ss_pred CCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC
Q 015463 161 GGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK 240 (406)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~ 240 (406)
++.-..+.+ +++ .-+.+..+.+..||+.-.+.+ ++|.+-.+|...-
T Consensus 70 S~np~Pv~t-~e~-h~kNVtaVgF~~dgrWMyTgs--------------------------------eDgt~kIWdlR~~ 115 (311)
T KOG0315|consen 70 SNNPNPVAT-FEG-HTKNVTAVGFQCDGRWMYTGS--------------------------------EDGTVKIWDLRSL 115 (311)
T ss_pred CCCCCceeE-Eec-cCCceEEEEEeecCeEEEecC--------------------------------CCceEEEEeccCc
Confidence 664322211 122 123456677777886444432 2576777777654
Q ss_pred eEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCEEEEEccCCcchh
Q 015463 241 QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYS 320 (406)
Q Consensus 241 ~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~~~~~~ 320 (406)
+...........|.|.+.|++.-|++++ ..+.|+.+++... .-..+..-+..-.-..+.+++||...+|.++...-+.
T Consensus 116 ~~qR~~~~~spVn~vvlhpnQteLis~d-qsg~irvWDl~~~-~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyv 193 (311)
T KOG0315|consen 116 SCQRNYQHNSPVNTVVLHPNQTELISGD-QSGNIRVWDLGEN-SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYV 193 (311)
T ss_pred ccchhccCCCCcceEEecCCcceEEeec-CCCcEEEEEccCC-ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEE
Confidence 4333333334558899999887776665 4688999998632 1111222111111245677888988888776655555
Q ss_pred hhh
Q 015463 321 HLM 323 (406)
Q Consensus 321 ~~~ 323 (406)
+.+
T Consensus 194 W~l 196 (311)
T KOG0315|consen 194 WRL 196 (311)
T ss_pred EEc
Confidence 433
No 70
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.70 E-value=0.052 Score=54.28 Aligned_cols=136 Identities=11% Similarity=0.095 Sum_probs=79.3
Q ss_pred eEEEEeCCCC-cEEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccccc
Q 015463 134 LGLRFDKKTG-DLYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 134 ~gi~~d~~~g-~L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~ 208 (406)
...++++ +| .|+.+... ..|+.+|..+++.+.+... .+ .....++.+||+ |+++...
T Consensus 199 ~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~g----~~~~~~~SPDG~~la~~~~~------------ 260 (427)
T PRK02889 199 ISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-KG----SNSAPAWSPDGRTLAVALSR------------ 260 (427)
T ss_pred ccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-CC----CccceEECCCCCEEEEEEcc------------
Confidence 3567888 55 45444432 2499999998876655322 12 223568889995 6665421
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCcc
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGN 286 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~~ 286 (406)
.+.-.||.+|.+++..+.+..........++++|++.++++... ...|+.+++.+..
T Consensus 261 ------------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--- 319 (427)
T PRK02889 261 ------------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--- 319 (427)
T ss_pred ------------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc---
Confidence 11246999998877766664433233457799999988766432 3367777765432
Q ss_pred eeeeecCCCCCCceEECCCCCE
Q 015463 287 LEAFAILPGYPDNVRTNEKGEF 308 (406)
Q Consensus 287 ~~~~~~l~g~pd~i~~d~~G~l 308 (406)
.+......+......++++|+.
T Consensus 320 ~~~lt~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 320 AQRVTFTGSYNTSPRISPDGKL 341 (427)
T ss_pred eEEEecCCCCcCceEECCCCCE
Confidence 2222111122234567888874
No 71
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.68 E-value=0.053 Score=54.57 Aligned_cols=136 Identities=12% Similarity=0.073 Sum_probs=81.0
Q ss_pred EEEEeCCCCc-EEEE-eCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccc
Q 015463 135 GLRFDKKTGD-LYIA-DAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENI 209 (406)
Q Consensus 135 gi~~d~~~g~-L~Va-d~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~ 209 (406)
...+++ +|+ |+.+ ... ..|+.+|..+++.+.+... .+ .....++.+||+ |+++...
T Consensus 222 ~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g----~~~~~~wSPDG~~La~~~~~------------- 282 (448)
T PRK04792 222 SPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PG----INGAPRFSPDGKKLALVLSK------------- 282 (448)
T ss_pred CceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CC----CcCCeeECCCCCEEEEEEeC-------------
Confidence 457888 554 4433 322 2599999988876655322 11 123567889996 6665321
Q ss_pred cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCcce
Q 015463 210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNL 287 (406)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~~~ 287 (406)
.+...|+.+|.++++.+.+..........++++|++.++++... ...|+++++++.+ .
T Consensus 283 -----------------~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---~ 342 (448)
T PRK04792 283 -----------------DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---V 342 (448)
T ss_pred -----------------CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---E
Confidence 11235999999988887765543344567899999988776543 2468888876432 2
Q ss_pred eeeecCCCCCCceEECCCCCEE
Q 015463 288 EAFAILPGYPDNVRTNEKGEFW 309 (406)
Q Consensus 288 ~~~~~l~g~pd~i~~d~~G~lw 309 (406)
+.+............++||+..
T Consensus 343 ~~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 343 SRLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEecCCCCCcCeeECCCCCEE
Confidence 2221111112235677888743
No 72
>PTZ00421 coronin; Provisional
Probab=97.65 E-value=0.037 Score=56.21 Aligned_cols=167 Identities=16% Similarity=0.098 Sum_probs=97.1
Q ss_pred eccCcccCcceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEe
Q 015463 63 KFLNQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD 139 (406)
Q Consensus 63 ~~~~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d 139 (406)
++.+.-....++++++ +++.|.+++.||.|..|+.. ....- .. . ... ...........+++.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--~~-~--~l~----------~L~gH~~~V~~l~f~ 134 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--IS-D--PIV----------HLQGHTKKVGIVSFH 134 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--cC-c--ceE----------EecCCCCcEEEEEeC
Confidence 3344434457889988 77778999999999999854 11000 00 0 000 011112445678898
Q ss_pred CCCCcE-EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCC
Q 015463 140 KKTGDL-YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLN 218 (406)
Q Consensus 140 ~~~g~L-~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~ 218 (406)
+..+++ ..+...+.|..+|.++++........ ...+.++++.++|.+.++.+.
T Consensus 135 P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h----~~~V~sla~spdG~lLatgs~---------------------- 188 (493)
T PTZ00421 135 PSAMNVLASAGADMVVNVWDVERGKAVEVIKCH----SDQITSLEWNLDGSLLCTTSK---------------------- 188 (493)
T ss_pred cCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC----CCceEEEEEECCCCEEEEecC----------------------
Confidence 833344 44555566889998877543221111 124778999999988777543
Q ss_pred CCCCCcccCCCCeEEEEeCCCCeEEEecccCCC--cceEEEecCCCEEEEEeC---CCCeEEEEEee
Q 015463 219 DPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF--PNGLSLSKDKSFFVFCEG---SVGRLHKYWLI 280 (406)
Q Consensus 219 ~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~--~ngi~l~~d~~~l~v~~t---~~~~i~~~~~~ 280 (406)
++.|..||+.+++...-...... ...+.+.+++..++.+.. ..+.|..+++.
T Consensus 189 ----------Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 189 ----------DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred ----------CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 47799999988765332222221 234556677766654432 23567777764
No 73
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.65 E-value=0.0071 Score=58.32 Aligned_cols=116 Identities=10% Similarity=0.023 Sum_probs=73.4
Q ss_pred CCcEEEEeCCCcEEEEeCCCCeEEEccc-----cc---CCcccccccceEEcCCC-CEEEEeCCCchhhhcccccccccc
Q 015463 142 TGDLYIADAYFGLMKVGPEGGLATSLAT-----EA---EGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQ 212 (406)
Q Consensus 142 ~g~L~Vad~~~gl~~~d~~~~~~~~l~~-----~~---~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~ 212 (406)
+..+||+.. +.|+.+|..+........ .. ++-......-++++++| ++|+.......+ .+
T Consensus 206 g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~--th-------- 274 (352)
T TIGR02658 206 GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW--TH-------- 274 (352)
T ss_pred CcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc--cc--------
Confidence 456777765 779999965543322211 00 11111122238999886 788854221000 00
Q ss_pred ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCC-EEEEEeCCCCeEEEEEeeC
Q 015463 213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKS-FFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~-~l~v~~t~~~~i~~~~~~g 281 (406)
..+.+.|..+|.++++......--..+.++++++|++ .+|++....+.|..++...
T Consensus 275 -------------k~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 275 -------------KTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred -------------cCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 1234579999999998776655556889999999999 8888876677899998653
No 74
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.65 E-value=0.0013 Score=63.39 Aligned_cols=159 Identities=19% Similarity=0.255 Sum_probs=91.9
Q ss_pred CcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEccc--ccCCcccccccceEEcCC----CCEEEEeCCCchhhhcc
Q 015463 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLAT--EAEGVPLRFTNDLDIDDE----GNVYFTDSSTNYQRRQM 204 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~--~~~~~~~~~~~~l~~d~d----G~ly~t~~~~~~~~~~~ 204 (406)
.+|.+|++.+ +|+|||++..+.|++++.++.....+.. .........+.+++++++ +.+|+..+.... ..
T Consensus 2 ~~P~~~a~~p-dG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~---~~ 77 (331)
T PF07995_consen 2 NNPRSMAFLP-DGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE---DG 77 (331)
T ss_dssp SSEEEEEEET-TSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T---SS
T ss_pred CCceEEEEeC-CCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccC---CC
Confidence 3589999999 7999999987779999855443122221 111122345678999984 899998642100 00
Q ss_pred ccccccccccccCCCCCCCcccCCCCeEEEEeCCCC--e---EEEecc-------cCCCcceEEEecCCCEEEEEeCC--
Q 015463 205 QKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK--Q---TTVLLR-------NLQFPNGLSLSKDKSFFVFCEGS-- 270 (406)
Q Consensus 205 ~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~--~---~~~~~~-------~~~~~ngi~l~~d~~~l~v~~t~-- 270 (406)
.....+|.++..+.+ . .+.+.. ..+...++++.||+ .||++--.
T Consensus 78 ---------------------~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~ 135 (331)
T PF07995_consen 78 ---------------------GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGG 135 (331)
T ss_dssp ---------------------SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TT
T ss_pred ---------------------CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCC
Confidence 011235666655433 1 222322 22334579999999 68887321
Q ss_pred -----------CCeEEEEEeeCCC----------CcceeeeecCCCCCCceEECCC-CCEEEEEccC
Q 015463 271 -----------VGRLHKYWLIGEK----------AGNLEAFAILPGYPDNVRTNEK-GEFWVAIHCR 315 (406)
Q Consensus 271 -----------~~~i~~~~~~g~~----------~~~~~~~~~l~g~pd~i~~d~~-G~lwv~~~~~ 315 (406)
.+.|+|++.+|.- ....++|+..--.|-++++|+. |+||++.+..
T Consensus 136 ~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 136 NDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp TGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred CcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence 3679999877631 1134555532223667899998 9999997643
No 75
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.64 E-value=0.0059 Score=57.13 Aligned_cols=188 Identities=19% Similarity=0.189 Sum_probs=104.1
Q ss_pred EEEcCCCCeeEEE-----ecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cEE
Q 015463 74 MAFDPLGRGPYTG-----VADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DLY 146 (406)
Q Consensus 74 i~~d~~g~~ly~g-----~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L~ 146 (406)
-++++||+.||+. +..|.|-.+|.. .++.+.... ..+-.|+-|.+.+ +| +|.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~--------------------s~GIGPHel~l~p-DG~tLv 114 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP--------------------SHGIGPHELLLMP-DGETLV 114 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec--------------------CCCcChhhEEEcC-CCCEEE
Confidence 3567899988875 334888888876 555543222 2234588899998 56 899
Q ss_pred EEeCC------C------------cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463 147 IADAY------F------------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 147 Vad~~------~------------gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~ 208 (406)
||..+ . .|..+|..+|++..-..........++..|+++.+|.+|++-...+-.
T Consensus 115 VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~-------- 186 (305)
T PF07433_consen 115 VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP-------- 186 (305)
T ss_pred EEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCC--------
Confidence 98642 0 255555555543221111112233468899999999999997431100
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec------ccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL------RNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~------~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g 281 (406)
....--|..++.. +..+.+. ..+ .+.-.|+++.|+..+.++....+++..++...
T Consensus 187 -----------------~~~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 187 -----------------GDAPPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred -----------------CccCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 0001113333332 2222221 111 23346999999988888877777777776542
Q ss_pred CCCcceeeeecCCCCCC--ceEECCCCCEEEEEccC
Q 015463 282 EKAGNLEAFAILPGYPD--NVRTNEKGEFWVAIHCR 315 (406)
Q Consensus 282 ~~~~~~~~~~~l~g~pd--~i~~d~~G~lwv~~~~~ 315 (406)
+. +....-+|| +++...+| +.++...+
T Consensus 249 ---g~---~~~~~~l~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 249 ---GR---LLGSVPLPDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred ---CC---EeeccccCceeeeeecCCc-eEEeCCCc
Confidence 22 221122355 45665555 55555444
No 76
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.61 E-value=0.0068 Score=55.60 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=82.5
Q ss_pred cCcccCcceEEEcCCCCeeEEEe-cCCEEEEEeCC---c---eeEEEeecCCCccccCCCCCcccccccCC-cCCcceEE
Q 015463 65 LNQIQGPESMAFDPLGRGPYTGV-ADGRILFWDGL---K---WTDFAFTSNNRSELCNPKPIATSYLKNEH-ICGRPLGL 136 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~g~~ly~g~-~~g~I~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gi 136 (406)
..++.-||+|++-.+|. +.+.. .+++|+.++.+ + ...+....-+ ... .....-||
T Consensus 61 l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~----------------~~~~~N~G~EGl 123 (248)
T PF06977_consen 61 LDGFGDYEGITYLGNGR-YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLG----------------FPNKGNKGFEGL 123 (248)
T ss_dssp -SS-SSEEEEEE-STTE-EEEEETTTTEEEEEEE----TT--EEEEEEEE-------------------S---SS--EEE
T ss_pred CCCCCCceeEEEECCCE-EEEEEcCCCcEEEEEEeccccccchhhceEEecc----------------cccCCCcceEEE
Confidence 34466799999986665 44444 36888887652 1 1111111000 000 01225699
Q ss_pred EEeCCCCcEEEEeCC--CcEEEEeC--CCCeEEEcc--ccc-CCcccccccceEEcC-CCCEEEEeCCCchhhhcccccc
Q 015463 137 RFDKKTGDLYIADAY--FGLMKVGP--EGGLATSLA--TEA-EGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 137 ~~d~~~g~L~Vad~~--~gl~~~d~--~~~~~~~l~--~~~-~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~ 208 (406)
++|+.+++|+++... .+|+.++. ......... ... .......+.++.+++ .|++|+-+..
T Consensus 124 a~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e------------ 191 (248)
T PF06977_consen 124 AYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE------------ 191 (248)
T ss_dssp EEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT------------
T ss_pred EEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC------------
Confidence 999977899999765 46888875 222222111 101 122334578899887 5788887643
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEE-e--cc-------cCCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTV-L--LR-------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKY 277 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~--~~-------~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~ 277 (406)
..+|+.+|.+ |+... + .. .+..|.|||+++||+ +|++.. .+..+++
T Consensus 192 --------------------s~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 192 --------------------SRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE-PNLFYRF 247 (248)
T ss_dssp --------------------TTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET-TTEEEEE
T ss_pred --------------------CCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC-CceEEEe
Confidence 2578888876 44322 2 22 245789999999985 666654 5688776
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0072 Score=55.67 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=98.5
Q ss_pred eeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463 62 IKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK 141 (406)
Q Consensus 62 ~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~ 141 (406)
+.|.|.-.-.-+|.+.|-++.+..++.|..|+.||... ..|.+ .-+..++|. .++|+
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~------------~~cqg---------~l~~~~~pi-~AfDp- 150 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV------------KKCQG---------LLNLSGRPI-AAFDP- 150 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC------------CCCce---------EEecCCCcc-eeECC-
Confidence 45566666667888888777566677788888888641 11221 112234454 58998
Q ss_pred CCcEEEEeCCC-cEEEEeCCC---CeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccccccccccccc
Q 015463 142 TGDLYIADAYF-GLMKVGPEG---GLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSS 216 (406)
Q Consensus 142 ~g~L~Vad~~~-gl~~~d~~~---~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e 216 (406)
+|-++.+.... .|..+|.+. |-++.+.-. .......++|.+.+||. |.+++..
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~--~~~~~ew~~l~FS~dGK~iLlsT~~-------------------- 208 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSIT--DNDEAEWTDLEFSPDGKSILLSTNA-------------------- 208 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccC--CCCccceeeeEEcCCCCEEEEEeCC--------------------
Confidence 77766655543 677777642 223332211 12234567889999995 5566542
Q ss_pred CCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCC----cceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 217 LNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF----PNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~----~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+-++.+|.-+|.+..-...... +-.-+++||+++++..+ ..++|..|+++
T Consensus 209 -------------s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs-~dg~i~vw~~~ 262 (311)
T KOG1446|consen 209 -------------SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS-DDGTIHVWNLE 262 (311)
T ss_pred -------------CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec-CCCcEEEEEcC
Confidence 4577777777765443333333 33667889999887765 46899999875
No 78
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.57 E-value=0.0054 Score=59.48 Aligned_cols=194 Identities=12% Similarity=0.156 Sum_probs=121.7
Q ss_pred cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG 143 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g 143 (406)
.+.-....++.+..+|..+.+++.|..|..||.+ +....... ..-.|..+.+.+++.
T Consensus 255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----------------------~~~~~~cvkf~pd~~ 312 (503)
T KOG0282|consen 255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----------------------LDKVPTCVKFHPDNQ 312 (503)
T ss_pred hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe----------------------cCCCceeeecCCCCC
Confidence 3444455778888888888888999988888877 32222111 123356677887553
Q ss_pred cEE-EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463 144 DLY-IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP 222 (406)
Q Consensus 144 ~L~-Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 222 (406)
+++ ++...+.|..+|..++++.. ..+..+..++++.+-++|.-+++++.
T Consensus 313 n~fl~G~sd~ki~~wDiRs~kvvq----eYd~hLg~i~~i~F~~~g~rFissSD-------------------------- 362 (503)
T KOG0282|consen 313 NIFLVGGSDKKIRQWDIRSGKVVQ----EYDRHLGAILDITFVDEGRRFISSSD-------------------------- 362 (503)
T ss_pred cEEEEecCCCcEEEEeccchHHHH----HHHhhhhheeeeEEccCCceEeeecc--------------------------
Confidence 554 55555789999998886321 12234556888999889988888753
Q ss_pred CcccCCCCeEEEEeCCCCeEEEec--ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC-CCcceeeee--cCCCCC
Q 015463 223 IKITKDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE-KAGNLEAFA--ILPGYP 297 (406)
Q Consensus 223 ~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~-~~~~~~~~~--~l~g~p 297 (406)
.+.+..++-.......+. ......-.+++.|.++. +.+++-.++|..|.+.-+ +....+.|. ..+|++
T Consensus 363 ------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~-~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 363 ------DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW-FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred ------CccEEEEEcCCCccchhhcchhhccCcceecCCCCCe-ehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 234555554433222111 11122236888888874 467777788888876532 223334454 257888
Q ss_pred CceEECCCCCEEEEEccCCc
Q 015463 298 DNVRTNEKGEFWVAIHCRRS 317 (406)
Q Consensus 298 d~i~~d~~G~lwv~~~~~~~ 317 (406)
-.+.+++||++.++..+...
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred eeEEEcCCCCeEEeecCCcc
Confidence 89999999998877654433
No 79
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.014 Score=58.98 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=104.8
Q ss_pred cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG 143 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g 143 (406)
.+.-.+..++++.++|..+.+++.|+.|..|+.. ....+.... ........++|.+ +|
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~--------------------gH~~~v~~~~f~p-~g 258 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK--------------------GHSTYVTSVAFSP-DG 258 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec--------------------CCCCceEEEEecC-CC
Confidence 4555677899999999988889999999999873 211111110 0123357899999 66
Q ss_pred cEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463 144 DLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP 222 (406)
Q Consensus 144 ~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 222 (406)
++.+.... .-+..+|.++++........ ...++.+++.++|++.++.+.
T Consensus 259 ~~i~Sgs~D~tvriWd~~~~~~~~~l~~h----s~~is~~~f~~d~~~l~s~s~-------------------------- 308 (456)
T KOG0266|consen 259 NLLVSGSDDGTVRIWDVRTGECVRKLKGH----SDGISGLAFSPDGNLLVSASY-------------------------- 308 (456)
T ss_pred CEEEEecCCCcEEEEeccCCeEEEeeecc----CCceEEEEECCCCCEEEEcCC--------------------------
Confidence 66665544 56888999886544322211 124778899999988887642
Q ss_pred CcccCCCCeEEEEeCCCCeEE--EecccCCCc---ceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 223 IKITKDTGRVLKYDPTTKQTT--VLLRNLQFP---NGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 223 ~~~~~~~g~l~~~d~~t~~~~--~~~~~~~~~---ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+|.+..||..+++.. ....+...+ .-+++++++++++.... .+.+..+++.
T Consensus 309 ------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~-d~~~~~w~l~ 364 (456)
T KOG0266|consen 309 ------DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL-DRTLKLWDLR 364 (456)
T ss_pred ------CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC-CCeEEEEEcc
Confidence 478999999998832 333333333 67889999998877643 4455555554
No 80
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.51 E-value=0.0012 Score=67.26 Aligned_cols=127 Identities=17% Similarity=0.328 Sum_probs=78.8
Q ss_pred CCcceEEEEeCCCCcEEEEeCC-C-------------------cEEEEeCCCC-------eEEEccccc-----------
Q 015463 130 CGRPLGLRFDKKTGDLYIADAY-F-------------------GLMKVGPEGG-------LATSLATEA----------- 171 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~Vad~~-~-------------------gl~~~d~~~~-------~~~~l~~~~----------- 171 (406)
..||-+|.+++.++.+|++.+. . .|++++++++ ....+....
T Consensus 349 f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~ 428 (524)
T PF05787_consen 349 FDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSN 428 (524)
T ss_pred ccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccC
Confidence 5789999999988999998643 1 4999998766 333332211
Q ss_pred --CCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc-ccCCCC-eEEEEeCCCCeEEEecc
Q 015463 172 --EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK-ITKDTG-RVLKYDPTTKQTTVLLR 247 (406)
Q Consensus 172 --~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~g-~l~~~d~~t~~~~~~~~ 247 (406)
....+..|..|++|++|+|||.+........ +......+.++ +....| .+..+++.+++++.+..
T Consensus 429 ~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~-----------l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~ 497 (524)
T PF05787_consen 429 KCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNN-----------LPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLV 497 (524)
T ss_pred cccCCCcCCCCceEECCCCCEEEEeCCCCCCcc-----------cccccccCceeeeeecccceeeeccccccceeeecc
Confidence 1235778999999999999999754221100 00000000000 000111 15667788888888764
Q ss_pred cC--CCcceEEEecCCCEEEEE
Q 015463 248 NL--QFPNGLSLSKDKSFFVFC 267 (406)
Q Consensus 248 ~~--~~~ngi~l~~d~~~l~v~ 267 (406)
.- ....|++++||++++|+.
T Consensus 498 ~P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 498 GPNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred CCCCcccccceECCCCCEEEEE
Confidence 43 334689999999999885
No 81
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.49 E-value=0.063 Score=52.73 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=61.2
Q ss_pred CcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463 70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI 147 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V 147 (406)
.--++++.++|+ ..||..+|.|..|+.. +++.-.. .+ .+...++..-. +|.|.-
T Consensus 248 ~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~---------------------aH-~ggv~~L~~lr-~GtllS 303 (626)
T KOG2106|consen 248 FVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH---------------------AH-DGGVFSLCMLR-DGTLLS 303 (626)
T ss_pred EEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee---------------------ec-CCceEEEEEec-CccEee
Confidence 446888989998 8999999999999886 2222111 11 34467777777 888887
Q ss_pred EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463 148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS 196 (406)
Q Consensus 148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~ 196 (406)
+.-++.|..+|-. .+.+....-...+..+..++... +.||++++.
T Consensus 304 GgKDRki~~Wd~~---y~k~r~~elPe~~G~iRtv~e~~-~di~vGTtr 348 (626)
T KOG2106|consen 304 GGKDRKIILWDDN---YRKLRETELPEQFGPIRTVAEGK-GDILVGTTR 348 (626)
T ss_pred cCccceEEecccc---ccccccccCchhcCCeeEEecCC-CcEEEeecc
Confidence 5555678888733 22222111111234566666554 349999864
No 82
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.49 E-value=0.0078 Score=61.46 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=63.9
Q ss_pred CeEEEEeCCC-----CeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCC------Cc-ceeeeec--CCC
Q 015463 230 GRVLKYDPTT-----KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK------AG-NLEAFAI--LPG 295 (406)
Q Consensus 230 g~l~~~d~~t-----~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~------~~-~~~~~~~--l~g 295 (406)
++|-.+|..+ .++..+..--..|.|++++|||+.+|++......+..+++..-+ .. +..+..+ +.-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 5688899887 34555555567899999999999999998888899999976421 11 0112222 222
Q ss_pred CCCceEECCCCCEEEEEccCCcchh
Q 015463 296 YPDNVRTNEKGEFWVAIHCRRSLYS 320 (406)
Q Consensus 296 ~pd~i~~d~~G~lwv~~~~~~~~~~ 320 (406)
-|--.++|.+|+.|+++.-...+..
T Consensus 376 GPLHTaFDg~G~aytslf~dsqv~k 400 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFLDSQIVK 400 (635)
T ss_pred CcceEEECCCCCEEEeEeecceeEE
Confidence 3778899999999999875544433
No 83
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.036 Score=53.73 Aligned_cols=183 Identities=17% Similarity=0.208 Sum_probs=107.5
Q ss_pred CcceEEEcCCCCeeEEEecCCEE--EEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcce-EEEEeCCCC
Q 015463 70 GPESMAFDPLGRGPYTGVADGRI--LFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL-GLRFDKKTG 143 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-gi~~d~~~g 143 (406)
+..++.+-+.-.++.++..++.+ +.+|.+ .++.+.. ...|. ..+|.+ +|
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l------------------------~~fPi~~a~f~p-~G 269 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL------------------------EKFPIQKAEFAP-NG 269 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee------------------------ccCccceeeecC-CC
Confidence 34677887777778888788755 444543 1221110 12233 345666 66
Q ss_pred c--EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463 144 D--LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221 (406)
Q Consensus 144 ~--L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 221 (406)
. ++.+....=+|.||..+.++..+... .|.+-.+...+.+.+++++......
T Consensus 270 ~~~i~~s~rrky~ysyDle~ak~~k~~~~-~g~e~~~~e~FeVShd~~fia~~G~------------------------- 323 (514)
T KOG2055|consen 270 HSVIFTSGRRKYLYSYDLETAKVTKLKPP-YGVEEKSMERFEVSHDSNFIAIAGN------------------------- 323 (514)
T ss_pred ceEEEecccceEEEEeeccccccccccCC-CCcccchhheeEecCCCCeEEEccc-------------------------
Confidence 5 33333334488999998887765432 3434456777888888885554322
Q ss_pred CCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCC-CCCce
Q 015463 222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG-YPDNV 300 (406)
Q Consensus 222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g-~pd~i 300 (406)
.|-|+.+...|+++..-..--....+++++.|++.+|++.. .+.||.+++... .-...|.+-.+ .-..+
T Consensus 324 -------~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~-~GeV~v~nl~~~--~~~~rf~D~G~v~gts~ 393 (514)
T KOG2055|consen 324 -------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGG-TGEVYVWNLRQN--SCLHRFVDDGSVHGTSL 393 (514)
T ss_pred -------CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcC-CceEEEEecCCc--ceEEEEeecCccceeee
Confidence 36688887777764322211123457889999998888754 469999998643 22233443222 12346
Q ss_pred EECCCCCEEEEEcc
Q 015463 301 RTNEKGEFWVAIHC 314 (406)
Q Consensus 301 ~~d~~G~lwv~~~~ 314 (406)
+.+.+|. |+|+.+
T Consensus 394 ~~S~ng~-ylA~GS 406 (514)
T KOG2055|consen 394 CISLNGS-YLATGS 406 (514)
T ss_pred eecCCCc-eEEecc
Confidence 6677887 555543
No 84
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.45 E-value=0.014 Score=59.75 Aligned_cols=160 Identities=17% Similarity=0.206 Sum_probs=104.5
Q ss_pred cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~ 144 (406)
...-.+-..+.+...|+.++..+-||++.-||....+-|...... ++ -.-..+++|+ .|.
T Consensus 389 teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-----------------~p--~QfscvavD~-sGe 448 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-----------------EP--IQFSCVAVDP-SGE 448 (893)
T ss_pred ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-----------------Cc--eeeeEEEEcC-CCC
Confidence 344456677788888998999999999999998743333221100 00 0123578898 788
Q ss_pred EEEEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463 145 LYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP 222 (406)
Q Consensus 145 L~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 222 (406)
|.+|.+. ..|+.++.++|+........+|+ +.++.++++|.+.++.+-.
T Consensus 449 lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~~LaS~SWD------------------------- 499 (893)
T KOG0291|consen 449 LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGSLLASGSWD------------------------- 499 (893)
T ss_pred EEEeeccceEEEEEEEeecCeeeehhcCCCCc----ceeeEEccccCeEEecccc-------------------------
Confidence 8777654 46999999999876655554443 5678999999887775421
Q ss_pred CcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 223 IKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
.+=+++-.-...++++.+. --..+-++++.|||+-+.|+. -.+.|..|+.+
T Consensus 500 -----kTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaT-ldgqItf~d~~ 550 (893)
T KOG0291|consen 500 -----KTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVAT-LDGQITFFDIK 550 (893)
T ss_pred -----ceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEE-ecceEEEEEhh
Confidence 0123433323334555543 123456789999999998875 45777777765
No 85
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.11 Score=52.53 Aligned_cols=184 Identities=17% Similarity=0.211 Sum_probs=108.8
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCCceeE-EEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTD-FAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~ 150 (406)
-++.+.++|+.+..++.++.+..++...... ... ..........+++|.+ ++...++.+
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~-d~~~l~s~s 222 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSP-DGSYLLSGS 222 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECC-CCcEEEEec
Confidence 4456778998766677777666665531110 000 0000112356789998 776555544
Q ss_pred C-CcEEEEeC-CCCe-EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463 151 Y-FGLMKVGP-EGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227 (406)
Q Consensus 151 ~-~gl~~~d~-~~~~-~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 227 (406)
. ..|..+|. +.+. ++.+... ...++++++.++|++.++.+.
T Consensus 223 ~D~tiriwd~~~~~~~~~~l~gH-----~~~v~~~~f~p~g~~i~Sgs~------------------------------- 266 (456)
T KOG0266|consen 223 DDKTLRIWDLKDDGRNLKTLKGH-----STYVTSVAFSPDGNLLVSGSD------------------------------- 266 (456)
T ss_pred CCceEEEeeccCCCeEEEEecCC-----CCceEEEEecCCCCEEEEecC-------------------------------
Confidence 3 56778887 3322 2333211 245789999999988887643
Q ss_pred CCCeEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecC--CCCCCceEECC
Q 015463 228 DTGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--PGYPDNVRTNE 304 (406)
Q Consensus 228 ~~g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l--~g~pd~i~~d~ 304 (406)
++.+..+|..+++......+. ...+++++++|+..++.+ ...+.|..|++.+....-.+.+... +..-..+.+++
T Consensus 267 -D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp 344 (456)
T KOG0266|consen 267 -DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP 344 (456)
T ss_pred -CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC
Confidence 467888999987766554443 355789999999877665 5577888888764321101122211 11124566788
Q ss_pred CCCEEEEEc
Q 015463 305 KGEFWVAIH 313 (406)
Q Consensus 305 ~G~lwv~~~ 313 (406)
+|.+.+...
T Consensus 345 ~~~~ll~~~ 353 (456)
T KOG0266|consen 345 NGKYLLSAS 353 (456)
T ss_pred CCcEEEEec
Confidence 888544443
No 86
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.38 E-value=0.0015 Score=64.93 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=76.9
Q ss_pred CCcceEEEEeCCCCcEEEEeCCC-----------------cEEEEeCCCC-------eEEEcccccCC------------
Q 015463 130 CGRPLGLRFDKKTGDLYIADAYF-----------------GLMKVGPEGG-------LATSLATEAEG------------ 173 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~Vad~~~-----------------gl~~~d~~~~-------~~~~l~~~~~~------------ 173 (406)
-.||-+|++.+..|++|++...+ .|+++-+.++ +...+....+.
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~ 495 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN 495 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence 46889999998778899986542 4899988775 33333221111
Q ss_pred -cccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC--C
Q 015463 174 -VPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL--Q 250 (406)
Q Consensus 174 -~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--~ 250 (406)
.-+..|..|++|+.|+||+.+..+....++. ..+-..+..=++++++++.+..+- .
T Consensus 496 ~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~---------------------~~G~~~m~~~~p~~g~~~rf~t~P~g~ 554 (616)
T COG3211 496 ANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNR---------------------FRGVTQMLTPDPKTGTIKRFLTGPIGC 554 (616)
T ss_pred cccccCCCceEECCCCCEEEEecCCCCccCcc---------------------cccccccccCCCccceeeeeccCCCcc
Confidence 1245699999999999999875422111110 011123555577778877766443 3
Q ss_pred CcceEEEecCCCEEEEEeC
Q 015463 251 FPNGLSLSKDKSFFVFCEG 269 (406)
Q Consensus 251 ~~ngi~l~~d~~~l~v~~t 269 (406)
...|.+++||+++++|.-.
T Consensus 555 E~tG~~FspD~~TlFV~vQ 573 (616)
T COG3211 555 EFTGPCFSPDGKTLFVNVQ 573 (616)
T ss_pred eeecceeCCCCceEEEEec
Confidence 4568999999999988743
No 87
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.36 E-value=0.034 Score=51.97 Aligned_cols=217 Identities=16% Similarity=0.183 Sum_probs=123.4
Q ss_pred cccccccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcC--
Q 015463 54 KNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHIC-- 130 (406)
Q Consensus 54 ~~~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 130 (406)
+..|...++. +..|=+++..++ .||.++.. +|+++... ..-.-.....+ -..|- .+ ...+..
T Consensus 38 ~g~l~~~~r~----F~r~MGl~~~~~--~l~~~t~~-qiw~f~~~~n~l~~~~~~~~-~D~~y---vP----r~~~~TGd 102 (335)
T TIGR03032 38 NGELDVFERT----FPRPMGLAVSPQ--SLTLGTRY-QLWRFANVDNLLPAGQTHPG-YDRLY---VP----RASYVTGD 102 (335)
T ss_pred CCcEEEEeec----cCccceeeeeCC--eEEEEEcc-eeEEcccccccccccccCCC-CCeEE---ee----eeeeeccC
Confidence 4455555555 456777777543 38998875 48888211 00000000000 00000 00 011111
Q ss_pred CcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccC----CcccccccceEEcCCCCEEEEeCCCchhhhccc
Q 015463 131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAE----GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQ 205 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~----~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~ 205 (406)
-..+.|++. ++.+|+.... .-|..+++.-.-+......+- ..---..|+++.....--|+|.-+..-...-|.
T Consensus 103 idiHdia~~--~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR 180 (335)
T TIGR03032 103 IDAHDLALG--AGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWR 180 (335)
T ss_pred cchhheeec--CCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCccccc
Confidence 224677883 5677766554 557788776443222221111 111125788998754467877643211111120
Q ss_pred cccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCc
Q 015463 206 KENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAG 285 (406)
Q Consensus 206 ~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~ 285 (406)
-.+.+|+++ +|-.+++ ++.+++.+|.+..+. |+ .||+++...+.+.+++.+ .|
T Consensus 181 -------------------~~~~~gG~v-idv~s~e--vl~~GLsmPhSPRWh-dg-rLwvldsgtGev~~vD~~---~G 233 (335)
T TIGR03032 181 -------------------EGRRDGGCV-IDIPSGE--VVASGLSMPHSPRWY-QG-KLWLLNSGRGELGYVDPQ---AG 233 (335)
T ss_pred -------------------ccccCCeEE-EEeCCCC--EEEcCccCCcCCcEe-CC-eEEEEECCCCEEEEEcCC---CC
Confidence 023345554 6776664 578999999988775 44 499999999999999854 46
Q ss_pred ceeeeecCCCCCCceEECCCCC-EEEEEccCC
Q 015463 286 NLEAFAILPGYPDNVRTNEKGE-FWVAIHCRR 316 (406)
Q Consensus 286 ~~~~~~~l~g~pd~i~~d~~G~-lwv~~~~~~ 316 (406)
+.+.+..+||+|.|+.+. |+ ++|++...|
T Consensus 234 ~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R 263 (335)
T TIGR03032 234 KFQPVAFLPGFTRGLAFA--GDFAFVGLSKLR 263 (335)
T ss_pred cEEEEEECCCCCccccee--CCEEEEEecccc
Confidence 778888999999999997 77 567776654
No 88
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.36 E-value=0.19 Score=49.85 Aligned_cols=140 Identities=15% Similarity=0.134 Sum_probs=81.2
Q ss_pred eEEEEeCCCCc-EEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccccc
Q 015463 134 LGLRFDKKTGD-LYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 134 ~gi~~d~~~g~-L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~ 208 (406)
...++++ +|+ |+.+... ..|+.+|.++++.+.+... .+ .....++.+||+ |+++...
T Consensus 193 ~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~~----~~~~~~~spDg~~l~~~~~~------------ 254 (417)
T TIGR02800 193 LSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASF-PG----MNGAPAFSPDGSKLAVSLSK------------ 254 (417)
T ss_pred ecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-CC----CccceEECCCCCEEEEEECC------------
Confidence 3456777 454 4444332 3589999988865554321 11 233467888985 6666432
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCcc
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGN 286 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~~ 286 (406)
.....|+.+|..+++.+.+..........++++|++.++++... ...|+.+++.+.+
T Consensus 255 ------------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--- 313 (417)
T TIGR02800 255 ------------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--- 313 (417)
T ss_pred ------------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---
Confidence 11245999999888777665433223356789999988766432 2368888876432
Q ss_pred eeeeecCCCCCCceEECCCCCEEEEE
Q 015463 287 LEAFAILPGYPDNVRTNEKGEFWVAI 312 (406)
Q Consensus 287 ~~~~~~l~g~pd~i~~d~~G~lwv~~ 312 (406)
...+............+++|+..+.+
T Consensus 314 ~~~l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 314 VRRLTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred EEEeecCCCCccCeEECCCCCEEEEE
Confidence 22222112233456778888744443
No 89
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.36 E-value=0.06 Score=50.06 Aligned_cols=151 Identities=18% Similarity=0.224 Sum_probs=87.1
Q ss_pred CCCeEEEEeCCCCeE------EEecccC--CCcceEEEecC--CCEEEEEeCCCCeEEEEEeeCCCCcceeeeec--CC-
Q 015463 228 DTGRVLKYDPTTKQT------TVLLRNL--QFPNGLSLSKD--KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LP- 294 (406)
Q Consensus 228 ~~g~l~~~d~~t~~~------~~~~~~~--~~~ngi~l~~d--~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~--l~- 294 (406)
++|.|--|+|.-+.. .++.... .--.|+|+... +++||.++..+++|.+|+-.=.+.....-|.+ +|
T Consensus 108 EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPa 187 (336)
T TIGR03118 108 EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPA 187 (336)
T ss_pred CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCC
Confidence 356677777643332 1221111 11247777743 67899999988999999743111111122332 22
Q ss_pred C-CCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCC
Q 015463 295 G-YPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSK 373 (406)
Q Consensus 295 g-~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~ 373 (406)
| -|-||.- -.|++||+....... .. --+.+...+.|-.||.+|+.++.+.. .
T Consensus 188 gyAPFnIqn-ig~~lyVtYA~qd~~----------~~---------------d~v~G~G~G~VdvFd~~G~l~~r~as-~ 240 (336)
T TIGR03118 188 GYAPFNVQN-LGGTLYVTYAQQDAD----------RN---------------DEVAGAGLGYVNVFTLNGQLLRRVAS-S 240 (336)
T ss_pred CCCCcceEE-ECCeEEEEEEecCCc----------cc---------------ccccCCCcceEEEEcCCCcEEEEecc-C
Confidence 1 2556654 468899997543110 00 01223556789999999999999854 3
Q ss_pred CCeeeceeEEE------EeCCEEEEecCCCCeEEEEeC
Q 015463 374 GKVVKAISEVE------EKDGKLWMGSVLMPFVAVYDL 405 (406)
Q Consensus 374 g~~~~~~s~~~------~~~g~Ly~Gs~~~~~i~~~~~ 405 (406)
|......-.+. ...|.|.+|.+....|..+|.
T Consensus 241 g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 241 GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDP 278 (336)
T ss_pred CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence 32221111111 236899999999999988874
No 90
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.35 E-value=0.021 Score=51.94 Aligned_cols=163 Identities=15% Similarity=0.240 Sum_probs=106.9
Q ss_pred ceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463 61 EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK 140 (406)
Q Consensus 61 ~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~ 140 (406)
.+.+.+.-..--++++++|++.+.+|+.|..|..|+..+...+...... + -+-...++|.|
T Consensus 98 t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~-----------------~--~~WVscvrfsP 158 (315)
T KOG0279|consen 98 TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDS-----------------H--REWVSCVRFSP 158 (315)
T ss_pred EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCC-----------------C--cCcEEEEEEcC
Confidence 3455666666788999999988999999999999986633333322110 0 12345688998
Q ss_pred CCCcEEEEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCC
Q 015463 141 KTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLN 218 (406)
Q Consensus 141 ~~g~L~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~ 218 (406)
...+.+|..+. +-+-.+|.++-+++. ...| ...+++.+++.+||.+-.+.
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~---~~~g-h~~~v~t~~vSpDGslcasG------------------------ 210 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQLRT---TFIG-HSGYVNTVTVSPDGSLCASG------------------------ 210 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcchhh---cccc-ccccEEEEEECCCCCEEecC------------------------
Confidence 44465555543 557778877654332 2223 23468899999999987763
Q ss_pred CCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 219 DPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 219 ~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
..+|.++.+|.+.++--...+.....+.++++|.. ..+.+.+ ...|..++++
T Consensus 211 --------gkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr-ywL~~at-~~sIkIwdl~ 262 (315)
T KOG0279|consen 211 --------GKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR-YWLCAAT-ATSIKIWDLE 262 (315)
T ss_pred --------CCCceEEEEEccCCceeEeccCCCeEeeEEecCCc-eeEeecc-CCceEEEecc
Confidence 33577888888877665556666677889999865 3334434 4567777765
No 91
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.34 E-value=0.19 Score=50.32 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=43.4
Q ss_pred eEEEEeCC--CCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCC
Q 015463 231 RVLKYDPT--TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG 306 (406)
Q Consensus 231 ~l~~~d~~--t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G 306 (406)
.|+.++.. ++..+.+..........+++||++.++++... ..+|+++++++. ..+.+...++...+....+||
T Consensus 306 ~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g---~~~~Lt~~~~~~~~p~wSpDG 382 (428)
T PRK01029 306 RIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG---RDYQLTTSPENKESPSWAIDS 382 (428)
T ss_pred eEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC---CeEEccCCCCCccceEECCCC
Confidence 57777653 23344443332333457899999988877543 247888887643 233333222334556777888
Q ss_pred C
Q 015463 307 E 307 (406)
Q Consensus 307 ~ 307 (406)
+
T Consensus 383 ~ 383 (428)
T PRK01029 383 L 383 (428)
T ss_pred C
Confidence 7
No 92
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.34 E-value=0.0014 Score=49.82 Aligned_cols=56 Identities=25% Similarity=0.432 Sum_probs=40.8
Q ss_pred EEEEeCCCCcEEEEeCC------------------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeC
Q 015463 135 GLRFDKKTGDLYIADAY------------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDS 195 (406)
Q Consensus 135 gi~~d~~~g~L~Vad~~------------------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~ 195 (406)
++.++.++|.+|++++. ++|+++||.+++.+.+... +.+||++++++|+. +.|+..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-----L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-----LYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-----ESSEEEEEE-TTSSEEEEEEG
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-----CCccCeEEEcCCCCEEEEEec
Confidence 56778734999999863 2499999999998887654 67899999999996 777764
No 93
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.33 E-value=0.11 Score=46.82 Aligned_cols=171 Identities=21% Similarity=0.267 Sum_probs=89.0
Q ss_pred CCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEE
Q 015463 78 PLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMK 156 (406)
Q Consensus 78 ~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~ 156 (406)
.++. +|+++.++.|+.++.. +-......... .....| ..+ ++.+|++...+.|+.
T Consensus 35 ~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~------------------~~~~~~---~~~--~~~v~v~~~~~~l~~ 90 (238)
T PF13360_consen 35 DGGR-VYVASGDGNLYALDAKTGKVLWRFDLPG------------------PISGAP---VVD--GGRVYVGTSDGSLYA 90 (238)
T ss_dssp ETTE-EEEEETTSEEEEEETTTSEEEEEEECSS------------------CGGSGE---EEE--TTEEEEEETTSEEEE
T ss_pred eCCE-EEEEcCCCEEEEEECCCCCEEEEeeccc------------------ccccee---eec--ccccccccceeeeEe
Confidence 3454 9999999999999975 32222211110 001112 233 688999987778999
Q ss_pred EeCCCCeEEEc--ccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEE
Q 015463 157 VGPEGGLATSL--ATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLK 234 (406)
Q Consensus 157 ~d~~~~~~~~l--~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~ 234 (406)
+|.++|+..-- ....+..........+++ ++.+|++..+ |.|+.
T Consensus 91 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------------------------------g~l~~ 136 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSS---------------------------------GKLVA 136 (238)
T ss_dssp EETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETC---------------------------------SEEEE
T ss_pred cccCCcceeeeeccccccccccccccCceEe-cCEEEEEecc---------------------------------CcEEE
Confidence 99777765322 111111112223334444 4567777643 78999
Q ss_pred EeCCCCeEEEecccCCCc------------ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEE
Q 015463 235 YDPTTKQTTVLLRNLQFP------------NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT 302 (406)
Q Consensus 235 ~d~~t~~~~~~~~~~~~~------------ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~ 302 (406)
+|+++|+..--... ..+ ++-.+..++ .+|++.. .+++..+++.. ++ ..+....+.+..+..
T Consensus 137 ~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~g~~~~~d~~t---g~-~~w~~~~~~~~~~~~ 209 (238)
T PF13360_consen 137 LDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDG-RVYVSSG-DGRVVAVDLAT---GE-KLWSKPISGIYSLPS 209 (238)
T ss_dssp EETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTT-EEEEECC-TSSEEEEETTT---TE-EEEEECSS-ECECEE
T ss_pred EecCCCcEEEEeec-CCCCCCcceeeecccccceEEECC-EEEEEcC-CCeEEEEECCC---CC-EEEEecCCCccCCce
Confidence 99999976332211 111 122232334 6777654 44566666543 22 123211121223233
Q ss_pred CCCCCEEEEEc
Q 015463 303 NEKGEFWVAIH 313 (406)
Q Consensus 303 d~~G~lwv~~~ 313 (406)
..++.+|++..
T Consensus 210 ~~~~~l~~~~~ 220 (238)
T PF13360_consen 210 VDGGTLYVTSS 220 (238)
T ss_dssp CCCTEEEEEET
T ss_pred eeCCEEEEEeC
Confidence 45566888773
No 94
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.30 E-value=0.13 Score=46.73 Aligned_cols=74 Identities=19% Similarity=0.113 Sum_probs=48.6
Q ss_pred EEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCc
Q 015463 74 MAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG 153 (406)
Q Consensus 74 i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~g 153 (406)
-..|.++.++|.|++|+..+.+|.....-+-. ..|.+.+ .. +=++++.++.||++...+.
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVyk------skcgG~~-----------f~---sP~i~~g~~sly~a~t~G~ 158 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK------SKCGGGT-----------FV---SPVIAPGDGSLYAAITAGA 158 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEe------cccCCce-----------ec---cceecCCCceEEEEeccce
Confidence 35677888999999999999999872221111 1232211 11 2245554789999998888
Q ss_pred EEEEeCCCCeEEEc
Q 015463 154 LMKVGPEGGLATSL 167 (406)
Q Consensus 154 l~~~d~~~~~~~~l 167 (406)
+.+++++......+
T Consensus 159 vlavt~~~~~~~~~ 172 (354)
T KOG4649|consen 159 VLAVTKNPYSSTEF 172 (354)
T ss_pred EEEEccCCCCccee
Confidence 99999887654443
No 95
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.29 E-value=0.22 Score=49.24 Aligned_cols=220 Identities=15% Similarity=0.148 Sum_probs=113.1
Q ss_pred CcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463 70 GPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~ 146 (406)
.-.++.+.|||..+-+...||+|+.+|.. .+.++.. .....|...+|...|+...+.
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~--------------------~~aHkGsIfalsWsPDs~~~~ 251 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED--------------------SDAHKGSIFALSWSPDSTQFL 251 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC--------------------CCCccccEEEEEECCCCceEE
Confidence 45788899999955566789999999987 2222211 112246688899998545566
Q ss_pred EEeCCCcEEEEeCCCCeEE-Ecccc--cCCcccc--cccc--eEEcCCCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463 147 IADAYFGLMKVGPEGGLAT-SLATE--AEGVPLR--FTND--LDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND 219 (406)
Q Consensus 147 Vad~~~gl~~~d~~~~~~~-~l~~~--~~~~~~~--~~~~--l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~ 219 (406)
-+.+++.+-.+|..++++. .+... .+..+.. ..++ |.+.-+|.|=+-+.+..-..+..+-++.++..+--+.+
T Consensus 252 T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 252 TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD 331 (603)
T ss_pred EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence 6666666777776655432 22111 1111000 0111 12222333222221110011111101111111111122
Q ss_pred CCCCcccCCCCeEEEEeCCCCeEEEecccCC--CcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCC
Q 015463 220 PSPIKITKDTGRVLKYDPTTKQTTVLLRNLQ--FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP 297 (406)
Q Consensus 220 ~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~--~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~p 297 (406)
...|.-+..+|.+..++..++....+..... .-.+++.+..++ ++-+ .....|++..+++......++ .++...|
T Consensus 332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~-g~Dd~l~~~~~~~~~~t~~~~-~~lg~QP 408 (603)
T KOG0318|consen 332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTI-GWDDTLRVISLKDNGYTKSEV-VKLGSQP 408 (603)
T ss_pred CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEE-ecCCeEEEEecccCcccccce-eecCCCc
Confidence 2334445557889999988876655532222 234666654343 4343 345789998887544333333 3455668
Q ss_pred CceEECCCCCEEEEE
Q 015463 298 DNVRTNEKGEFWVAI 312 (406)
Q Consensus 298 d~i~~d~~G~lwv~~ 312 (406)
-+++..++|.+-+..
T Consensus 409 ~~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 409 KGLAVLSDGGTAVVA 423 (603)
T ss_pred eeEEEcCCCCEEEEE
Confidence 899999888654443
No 96
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.28 E-value=0.24 Score=49.44 Aligned_cols=136 Identities=15% Similarity=0.220 Sum_probs=80.9
Q ss_pred eEEEEeCCCCc-E-EEEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccccc
Q 015463 134 LGLRFDKKTGD-L-YIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 134 ~gi~~d~~~g~-L-~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~ 208 (406)
....+++ +|+ | |+.... ..|++++.++++.+.+... .+ ......+.+||+ |+++...
T Consensus 202 ~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~g----~~~~~~~SpDG~~la~~~~~------------ 263 (430)
T PRK00178 202 LSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-EG----LNGAPAWSPDGSKLAFVLSK------------ 263 (430)
T ss_pred eeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-CC----CcCCeEECCCCCEEEEEEcc------------
Confidence 4567888 554 5 444332 2599999998877665422 11 123467888985 6655432
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCcc
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGN 286 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~~ 286 (406)
.+...|+.+|.++++.+.+..........++++|++.++++... ...|+++++.+.+
T Consensus 264 ------------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~--- 322 (430)
T PRK00178 264 ------------------DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR--- 322 (430)
T ss_pred ------------------CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---
Confidence 11246999999988877665433334457799999988776532 2468888876432
Q ss_pred eeeeecCCCCCCceEECCCCCE
Q 015463 287 LEAFAILPGYPDNVRTNEKGEF 308 (406)
Q Consensus 287 ~~~~~~l~g~pd~i~~d~~G~l 308 (406)
.+.+............+++|+.
T Consensus 323 ~~~lt~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 323 AERVTFVGNYNARPRLSADGKT 344 (430)
T ss_pred EEEeecCCCCccceEECCCCCE
Confidence 2222211112234566788873
No 97
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.27 E-value=0.13 Score=46.37 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=60.3
Q ss_pred CCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463 142 TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221 (406)
Q Consensus 142 ~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 221 (406)
++.+|+++..+.|+.+|..+|+..--... .+. ...+ . ...++.+|+.+..
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~-~~~~--~-~~~~~~v~v~~~~------------------------- 85 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDL-PGP-ISGA--P-VVDGGRVYVGTSD------------------------- 85 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEEC-SSC-GGSG--E-EEETTEEEEEETT-------------------------
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeec-ccc-ccce--e-eecccccccccce-------------------------
Confidence 78999998888999999988864321111 111 1111 2 3346788888743
Q ss_pred CCcccCCCCeEEEEeCCCCeEEEec-c-c---CCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 222 PIKITKDTGRVLKYDPTTKQTTVLL-R-N---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 222 ~~~~~~~~g~l~~~d~~t~~~~~~~-~-~---~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+.|+.+|..+|+..--. . . ...........+++.+++... .+.|..++++
T Consensus 86 --------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~ 140 (238)
T PF13360_consen 86 --------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPK 140 (238)
T ss_dssp --------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETT
T ss_pred --------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecC
Confidence 58999998888764331 1 1 111112223334667777664 5788888865
No 98
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.26 E-value=0.14 Score=48.08 Aligned_cols=107 Identities=17% Similarity=0.116 Sum_probs=66.2
Q ss_pred CcceEEEEeCCCCcEEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccc
Q 015463 131 GRPLGLRFDKKTGDLYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKE 207 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~ 207 (406)
.|.++++.++ .....|+-+. .=++.+|+.+++........++. .|--.-++++||++.+++.+ ++
T Consensus 5 ~RgH~~a~~p-~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEn------d~--- 72 (305)
T PF07433_consen 5 ARGHGVAAHP-TRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEN------DY--- 72 (305)
T ss_pred ccccceeeCC-CCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEecc------cc---
Confidence 4566777776 3333333222 23788899888765443333333 23335678899977776643 11
Q ss_pred cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEE---ecccCCCcceEEEecCCCEEEEEe
Q 015463 208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTV---LLRNLQFPNGLSLSKDKSFFVFCE 268 (406)
Q Consensus 208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~---~~~~~~~~ngi~l~~d~~~l~v~~ 268 (406)
....|.|-+||.. ..++. +...--.|.-+.+.+|+++|.|++
T Consensus 73 ------------------~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 73 ------------------ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred ------------------CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 3446889999998 33333 334445678899999999998885
No 99
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.26 E-value=0.039 Score=53.38 Aligned_cols=134 Identities=11% Similarity=0.098 Sum_probs=69.2
Q ss_pred EEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccc--ccccccc
Q 015463 135 GLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQ--KENIPLQ 212 (406)
Q Consensus 135 gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~--~~~~~~~ 212 (406)
|..+.+++..+|-....+.|.++|.++.+.+.+....++-. .-.....+.|++.+++....+. ++. ..-..+.
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~--g~gt~v~n~d~t~~~g~e~~~~---d~~~l~~~~~f~ 159 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK--GYGTWVANSDCTKLVGIEISRE---DWKPLTKWKGFR 159 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEE--EEEEEEE-TTSSEEEEEEEEGG---G-----SHHHHH
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccc--cccceeeCCCccEEEEEEEeeh---hccCccccHHHH
Confidence 44555645565433345789999999988766554332211 1122345668888776532111 110 0001245
Q ss_pred ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEec-CCCEEEEEeCC-----CCeEEEEEeeCC
Q 015463 213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK-DKSFFVFCEGS-----VGRLHKYWLIGE 282 (406)
Q Consensus 213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~-d~~~l~v~~t~-----~~~i~~~~~~g~ 282 (406)
++++ ..+..+|+.+|.+||+.+++.+.-...+=+.++| |...+-+|..+ ..|||.++.+|.
T Consensus 160 e~~~---------a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 160 EFYE---------ARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp HHHH---------C---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred HHHh---------hCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence 5555 6677899999999999998876555555566776 33344444332 258999987764
No 100
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0053 Score=53.65 Aligned_cols=103 Identities=21% Similarity=0.341 Sum_probs=69.5
Q ss_pred CcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCe-EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccc
Q 015463 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENI 209 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~-~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~ 209 (406)
|.=+|++-| +.+||.+|...-|..-||++=. ...+....+|.|....|.+..- ||.+|.-.+-
T Consensus 131 GeGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~------------- 194 (262)
T COG3823 131 GEGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQ------------- 194 (262)
T ss_pred CcceeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeee-------------
Confidence 445788877 5679999876778888887521 1122233467777777777654 6777765432
Q ss_pred cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecc--c-----------CCCcceEEEecCCCEEEEEe
Q 015463 210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR--N-----------LQFPNGLSLSKDKSFFVFCE 268 (406)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--~-----------~~~~ngi~l~~d~~~l~v~~ 268 (406)
+.++.+++|++|++....+ + ..-.||||..++++.+|++.
T Consensus 195 -------------------t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 195 -------------------TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred -------------------ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 2469999999998866531 1 12368999999998888864
No 101
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.19 E-value=0.015 Score=56.50 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=61.0
Q ss_pred CCCCcccCCCC-eEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCC
Q 015463 220 PSPIKITKDTG-RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYP 297 (406)
Q Consensus 220 ~~~~~~~~~~g-~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~p 297 (406)
++...++..+| .|-.||..+++.++....+.....+.+++||+.+.+++. +..||.++++.. +.+... ...|+.
T Consensus 371 ~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd-r~el~vididng---nv~~idkS~~~lI 446 (668)
T COG4946 371 PEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND-RFELWVIDIDNG---NVRLIDKSEYGLI 446 (668)
T ss_pred CcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC-ceEEEEEEecCC---CeeEeccccccee
Confidence 33444566666 788999999999999888888888999999999888764 678999999853 222222 123444
Q ss_pred CceEECCCCCEEEEE
Q 015463 298 DNVRTNEKGEFWVAI 312 (406)
Q Consensus 298 d~i~~d~~G~lwv~~ 312 (406)
.++...+++ -|+|.
T Consensus 447 tdf~~~~ns-r~iAY 460 (668)
T COG4946 447 TDFDWHPNS-RWIAY 460 (668)
T ss_pred EEEEEcCCc-eeEEE
Confidence 455555544 35554
No 102
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.18 E-value=0.51 Score=51.19 Aligned_cols=160 Identities=9% Similarity=-0.017 Sum_probs=90.9
Q ss_pred cceEEEcCCCCeeEEEecCCEEEEEeCCc-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEE
Q 015463 71 PESMAFDPLGRGPYTGVADGRILFWDGLK-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIA 148 (406)
Q Consensus 71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Va 148 (406)
..+++++++|+.+.++..++.|..|+... ...-. ...... . .... .....++++.+..+. |..+
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~--~~~~~~-~----------~~~~-~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR--DIHYPV-V----------ELAS-RSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCccccccc--ccccce-E----------Eecc-cCceeeEEeccCCCCEEEEE
Confidence 46788999999888899999999998541 00000 000000 0 0000 122456777653344 4444
Q ss_pred eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463 149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227 (406)
Q Consensus 149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 227 (406)
+..+.|..+|..+++........ ...+.++++++ +|.++++.+.
T Consensus 552 ~~Dg~v~lWd~~~~~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sgs~------------------------------- 596 (793)
T PLN00181 552 NFEGVVQVWDVARSQLVTEMKEH----EKRVWSIDYSSADPTLLASGSD------------------------------- 596 (793)
T ss_pred eCCCeEEEEECCCCeEEEEecCC----CCCEEEEEEcCCCCCEEEEEcC-------------------------------
Confidence 44456778898766533211111 13477888885 7777777543
Q ss_pred CCCeEEEEeCCCCeEEEecccCCCcceEEEec-CCCEEEEEeCCCCeEEEEEeeC
Q 015463 228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~-d~~~l~v~~t~~~~i~~~~~~g 281 (406)
+|.+..||..+++.............+++.+ ++..+ ++....+.|..|++..
T Consensus 597 -Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~l-atgs~dg~I~iwD~~~ 649 (793)
T PLN00181 597 -DGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSL-AFGSADHKVYYYDLRN 649 (793)
T ss_pred -CCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEE-EEEeCCCeEEEEECCC
Confidence 4678888887765433222222334566644 56554 4455567888888753
No 103
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=97.15 E-value=0.08 Score=48.79 Aligned_cols=150 Identities=17% Similarity=0.212 Sum_probs=86.0
Q ss_pred eEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEEeC
Q 015463 73 SMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIADA 150 (406)
Q Consensus 73 ~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Vad~ 150 (406)
.+.+.|+|..+-+|..|..|+.|+.. .-.-+.... ...+-..++.+.+ +++ |+-+..
T Consensus 52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk--------------------gHsgAVM~l~~~~-d~s~i~S~gt 110 (338)
T KOG0265|consen 52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK--------------------GHSGAVMELHGMR-DGSHILSCGT 110 (338)
T ss_pred EEEECCCCCeEeecCCcceEEEEeccccccceeeec--------------------cccceeEeeeecc-CCCEEEEecC
Confidence 34588999977788899999999743 111111110 1124467788887 555 555555
Q ss_pred CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463 151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG 230 (406)
Q Consensus 151 ~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g 230 (406)
++.++.+|.++|+...-... -..++|.+...+.|-..+.+. ..++
T Consensus 111 Dk~v~~wD~~tG~~~rk~k~----h~~~vNs~~p~rrg~~lv~Sg-------------------------------sdD~ 155 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIRKHKG----HTSFVNSLDPSRRGPQLVCSG-------------------------------SDDG 155 (338)
T ss_pred CceEEEEecccceeeehhcc----ccceeeecCccccCCeEEEec-------------------------------CCCc
Confidence 68899999999875432111 124677777777776666553 3457
Q ss_pred eEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463 231 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 279 (406)
Q Consensus 231 ~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~ 279 (406)
.+-.||..++......+.-.....+++..+.+-+ ++.--.+.|..+++
T Consensus 156 t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv-~sggIdn~ikvWd~ 203 (338)
T KOG0265|consen 156 TLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV-ISGGIDNDIKVWDL 203 (338)
T ss_pred eEEEEeecccchhhccccceeEEEEEecccccce-eeccccCceeeecc
Confidence 7888888755433222222222345555444433 33222345555554
No 104
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.10 E-value=0.11 Score=45.90 Aligned_cols=103 Identities=11% Similarity=0.097 Sum_probs=65.7
Q ss_pred CcceEEEEeCCCCcEEEEeC--CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463 131 GRPLGLRFDKKTGDLYIADA--YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~--~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~ 208 (406)
+....+++.|++..+.|... ...+..+|.++..+..+. -...|.+...|+|++.+....
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-------~~~~n~i~wsP~G~~l~~~g~------------ 120 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-------TQPRNTISWSPDGRFLVLAGF------------ 120 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-------CCCceEEEECCCCCEEEEEEc------------
Confidence 33678999994344545432 246888888754444332 124578999999987776532
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS 270 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~ 270 (406)
+...|.|..||.++.+..... .......++++|||+++..+.+.
T Consensus 121 -----------------~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 121 -----------------GNLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred -----------------cCCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEec
Confidence 222477889998855443222 23345789999999998877653
No 105
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.09 E-value=0.037 Score=56.47 Aligned_cols=86 Identities=20% Similarity=0.405 Sum_probs=52.9
Q ss_pred CcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC-------eEEE
Q 015463 173 GVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK-------QTTV 244 (406)
Q Consensus 173 ~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~-------~~~~ 244 (406)
..++..+.++.+++ +|.+||+.++..- +.. .. .+..+.......|.|++|++..+ +++.
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~-r~~--------~~----~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~ 412 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSG-RGE--------SD----VDAANPRAGNGYGQIYRYDPDGNDHAATTFTWEL 412 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCC-Ccc--------cc----cccCCcccCCcccEEEEecccCCccccceeEEEE
Confidence 35678899999987 5899999764320 000 00 00111112445689999998866 3433
Q ss_pred ecc------------------cCCCcceEEEecCCCEEEEEeCCCC
Q 015463 245 LLR------------------NLQFPNGLSLSKDKSFFVFCEGSVG 272 (406)
Q Consensus 245 ~~~------------------~~~~~ngi~l~~d~~~l~v~~t~~~ 272 (406)
+.. .+..|.+|+++++++ ||++|....
T Consensus 413 ~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~ 457 (524)
T PF05787_consen 413 FLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGG 457 (524)
T ss_pred EEEecCcccccccccCcccCCCcCCCCceEECCCCC-EEEEeCCCC
Confidence 321 245678899999987 777776544
No 106
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.04 E-value=0.14 Score=47.02 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=95.6
Q ss_pred ccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEe--cccCCCcce
Q 015463 177 RFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL--LRNLQFPNG 254 (406)
Q Consensus 177 ~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~--~~~~~~~ng 254 (406)
.|..++.+..+|.+|-++.-. +...|.++|++|+++... ...-.|..|
T Consensus 45 aFTQGL~~~~~g~LyESTG~y------------------------------G~S~l~~~d~~tg~~~~~~~l~~~~FgEG 94 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLY------------------------------GQSSLRKVDLETGKVLQSVPLPPRYFGEG 94 (264)
T ss_dssp -EEEEEEEEETTEEEEEECST------------------------------TEEEEEEEETTTSSEEEEEE-TTT--EEE
T ss_pred ccCccEEecCCCEEEEeCCCC------------------------------CcEEEEEEECCCCcEEEEEECCcccccee
Confidence 466788887799999998531 124699999999986432 455568889
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhh
Q 015463 255 LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLL 334 (406)
Q Consensus 255 i~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~ 334 (406)
+++..| .+|.-.-.++..++|+.+. ......| ..+|-.-|++.|. ..||++..+.+
T Consensus 95 it~~~d--~l~qLTWk~~~~f~yd~~t--l~~~~~~-~y~~EGWGLt~dg-~~Li~SDGS~~------------------ 150 (264)
T PF05096_consen 95 ITILGD--KLYQLTWKEGTGFVYDPNT--LKKIGTF-PYPGEGWGLTSDG-KRLIMSDGSSR------------------ 150 (264)
T ss_dssp EEEETT--EEEEEESSSSEEEEEETTT--TEEEEEE-E-SSS--EEEECS-SCEEEE-SSSE------------------
T ss_pred EEEECC--EEEEEEecCCeEEEEcccc--ceEEEEE-ecCCcceEEEcCC-CEEEEECCccc------------------
Confidence 999744 4777666667888898652 1122222 2334445788763 46888886541
Q ss_pred ccCccceeeeeEeecCcceEEEEEECCCC-CEEEEEE-CCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463 335 KLPISAKTHYLIHVGGRLHAMAVKYSPEG-KILQVLE-DSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405 (406)
Q Consensus 335 ~l~~~~~~~~~~~~~~~~~~~v~~~d~~g-~~~~~~~-~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~ 405 (406)
+..+||+. +...... ..+|..+..+..+.-.+|+||---+..+.|.++|.
T Consensus 151 ---------------------L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 151 ---------------------LYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp ---------------------EEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred ---------------------eEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence 44556642 2332222 12566666677776779999999999999999985
No 107
>PTZ00420 coronin; Provisional
Probab=97.00 E-value=0.51 Score=48.73 Aligned_cols=165 Identities=11% Similarity=0.029 Sum_probs=94.0
Q ss_pred cCcccCcceEEEcCC-CCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463 65 LNQIQGPESMAFDPL-GRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT 142 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~ 142 (406)
.+.-....++++.++ ++.+.+++.+|.|..|+.. .-....... . ..| ...........+++.+ +
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~-~--p~~----------~L~gH~~~V~sVaf~P-~ 136 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK-D--PQC----------ILKGHKKKISIIDWNP-M 136 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-c--ceE----------EeecCCCcEEEEEECC-C
Confidence 344445678899886 6778899999999999864 110000000 0 000 0111124466889998 5
Q ss_pred Cc-EEE-EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463 143 GD-LYI-ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP 220 (406)
Q Consensus 143 g~-L~V-ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~ 220 (406)
+. +.+ +...+.|..+|..+++...-.. . ...+.+++++++|.+.++.+.
T Consensus 137 g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~----~~~V~SlswspdG~lLat~s~------------------------ 187 (568)
T PTZ00420 137 NYYIMCSSGFDSFVNIWDIENEKRAFQIN-M----PKKLSSLKWNIKGNLLSGTCV------------------------ 187 (568)
T ss_pred CCeEEEEEeCCCeEEEEECCCCcEEEEEe-c----CCcEEEEEECCCCCEEEEEec------------------------
Confidence 54 433 3344668889988775322111 1 124678899999998877542
Q ss_pred CCCcccCCCCeEEEEeCCCCeEEEecccCCCc-ce--E---EEecCCCEEEEEeCCC---CeEEEEEee
Q 015463 221 SPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP-NG--L---SLSKDKSFFVFCEGSV---GRLHKYWLI 280 (406)
Q Consensus 221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~-ng--i---~l~~d~~~l~v~~t~~---~~i~~~~~~ 280 (406)
++.|..||+.+++...-..+.... +. + .+++|++.++.+.... ..|..+++.
T Consensus 188 --------D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 188 --------GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred --------CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 367899999887654322222111 11 1 2346777665554433 247777765
No 108
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.99 E-value=0.1 Score=50.14 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=43.8
Q ss_pred cceEEEEeCCCCcEEEEeCCC-------cEEEEeCCCCeEEEcc--ccc-------CC-cccccccceEEcCCCC-EEEE
Q 015463 132 RPLGLRFDKKTGDLYIADAYF-------GLMKVGPEGGLATSLA--TEA-------EG-VPLRFTNDLDIDDEGN-VYFT 193 (406)
Q Consensus 132 ~p~gi~~d~~~g~L~Vad~~~-------gl~~~d~~~~~~~~l~--~~~-------~~-~~~~~~~~l~~d~dG~-ly~t 193 (406)
.+-||++.+ +|.+||++.+. .|++++.++...+.+. ... .+ .....+.+|++.+||. ||+.
T Consensus 86 D~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 355899966 89999999865 5999998854434331 111 11 2334577899999998 8888
Q ss_pred eCC
Q 015463 194 DSS 196 (406)
Q Consensus 194 ~~~ 196 (406)
..+
T Consensus 165 ~E~ 167 (326)
T PF13449_consen 165 MES 167 (326)
T ss_pred ECc
Confidence 654
No 109
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.99 E-value=0.041 Score=56.50 Aligned_cols=184 Identities=15% Similarity=0.160 Sum_probs=107.2
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcc-eEEEEeCCCCcEEEEeC
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIADA 150 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~d~~~g~L~Vad~ 150 (406)
-+..+.|+.+.|..++.|+.+..|..+.++....-... ..| ..+.|.| .|..++..+
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH---------------------~~PVwdV~F~P-~GyYFatas 512 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH---------------------LAPVWDVQFAP-RGYYFATAS 512 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEEEecCC---------------------CcceeeEEecC-CceEEEecC
Confidence 44557788887777888898888887754433221110 113 3456776 554443333
Q ss_pred CC---cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463 151 YF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227 (406)
Q Consensus 151 ~~---gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 227 (406)
+. .||..|.. .-.+.++. .+..+.++.++|+.+.-+|.++
T Consensus 513 ~D~tArLWs~d~~-~PlRifag-----hlsDV~cv~FHPNs~Y~aTGSs------------------------------- 555 (707)
T KOG0263|consen 513 HDQTARLWSTDHN-KPLRIFAG-----HLSDVDCVSFHPNSNYVATGSS------------------------------- 555 (707)
T ss_pred CCceeeeeecccC-Cchhhhcc-----cccccceEEECCcccccccCCC-------------------------------
Confidence 33 24444331 11222221 2456778899999877666543
Q ss_pred CCCeEEEEeCCCCeEEEecccCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecC---CCCCCceEEC
Q 015463 228 DTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL---PGYPDNVRTN 303 (406)
Q Consensus 228 ~~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l---~g~pd~i~~d 303 (406)
+-.+-.+|-.+|....+..+...+ ..+++||+|++| .+....+.|..+++.+. +.+..+ .+.-..+.++
T Consensus 556 -D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~-----~~v~~l~~Ht~ti~SlsFS 628 (707)
T KOG0263|consen 556 -DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-ASGDEDGLIKIWDLANG-----SLVKQLKGHTGTIYSLSFS 628 (707)
T ss_pred -CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-eecccCCcEEEEEcCCC-----cchhhhhcccCceeEEEEe
Confidence 223555666666555555444333 578999999876 55555677777777542 112111 2334557788
Q ss_pred CCCCEEEEEccCCcchhh
Q 015463 304 EKGEFWVAIHCRRSLYSH 321 (406)
Q Consensus 304 ~~G~lwv~~~~~~~~~~~ 321 (406)
.+|++.|+.....++.+|
T Consensus 629 ~dg~vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 629 RDGNVLASGGADNSVRLW 646 (707)
T ss_pred cCCCEEEecCCCCeEEEE
Confidence 999999998777666554
No 110
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.97 E-value=0.077 Score=54.58 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=92.4
Q ss_pred CCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463 130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~ 208 (406)
+|..+|..|.| +.++.+..+. ..+..+..++....+.... ...-+.++.+.|.| +||++.+
T Consensus 451 ~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~G----H~~PVwdV~F~P~G-yYFatas------------ 512 (707)
T KOG0263|consen 451 SGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKG----HLAPVWDVQFAPRG-YYFATAS------------ 512 (707)
T ss_pred CCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecC----CCcceeeEEecCCc-eEEEecC------------
Confidence 56568999999 6777766554 4444455444433222221 11225667788887 5666554
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCccee
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE 288 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~ 288 (406)
+..+.+||..|-. .-.+.++..+....++.+.|+..++ .++.....+..++... ....+
T Consensus 513 -----------------~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~-aTGSsD~tVRlWDv~~--G~~VR 571 (707)
T KOG0263|consen 513 -----------------HDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYV-ATGSSDRTVRLWDVST--GNSVR 571 (707)
T ss_pred -----------------CCceeeeeecccC-CchhhhcccccccceEEECCccccc-ccCCCCceEEEEEcCC--CcEEE
Confidence 3445678887763 5556667777777889999987643 4444444455555432 23456
Q ss_pred eeecCCCCCCceEECCCCCEEEEEccCCcchhhhhhc
Q 015463 289 AFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMAL 325 (406)
Q Consensus 289 ~~~~l~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~ 325 (406)
+|..-.+--..+++++.|+..++....+.+..|.+..
T Consensus 572 iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 572 IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 6643222234577889997666665555555544443
No 111
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.94 E-value=0.29 Score=47.06 Aligned_cols=151 Identities=8% Similarity=-0.029 Sum_probs=89.1
Q ss_pred ceEEEEeCCCCcEEEEe-CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccc
Q 015463 133 PLGLRFDKKTGDLYIAD-AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPL 211 (406)
Q Consensus 133 p~gi~~d~~~g~L~Vad-~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~ 211 (406)
..-|.++| +++..++. ...-+..+|.++|......... -...+.+.+.-+||.=+++.+
T Consensus 272 V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~---~~~S~~sc~W~pDg~~~V~Gs---------------- 331 (519)
T KOG0293|consen 272 VSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYPSG---LGFSVSSCAWCPDGFRFVTGS---------------- 331 (519)
T ss_pred eEEEEECC-CCCeEEecCchHheeeccCCcchhhhhcccC---cCCCcceeEEccCCceeEecC----------------
Confidence 34678999 55544443 3345888899888765443221 123456677788886666643
Q ss_pred cccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC--CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceee
Q 015463 212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEA 289 (406)
Q Consensus 212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~ 289 (406)
+++.++.+|.+......+ ++. +....+++++||+.++.... ..+|..|+.... ...-
T Consensus 332 ----------------~dr~i~~wdlDgn~~~~W-~gvr~~~v~dlait~Dgk~vl~v~~-d~~i~l~~~e~~---~dr~ 390 (519)
T KOG0293|consen 332 ----------------PDRTIIMWDLDGNILGNW-EGVRDPKVHDLAITYDGKYVLLVTV-DKKIRLYNREAR---VDRG 390 (519)
T ss_pred ----------------CCCcEEEecCCcchhhcc-cccccceeEEEEEcCCCcEEEEEec-ccceeeechhhh---hhhc
Confidence 245677788775433222 222 23457899999999988764 578888876531 0010
Q ss_pred eecCCCCCCceEECCCCCEEEEEccCCcchhhhhh
Q 015463 290 FAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMA 324 (406)
Q Consensus 290 ~~~l~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~ 324 (406)
.+.....-..+.++.+|++.+..-.......+.+.
T Consensus 391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred cccccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 11111113456678899987776655555554444
No 112
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.94 E-value=0.19 Score=50.27 Aligned_cols=117 Identities=9% Similarity=0.022 Sum_probs=66.1
Q ss_pred cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCe
Q 015463 153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGR 231 (406)
Q Consensus 153 gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~ 231 (406)
.|+.+|.++...+.+... . ....+....+||+ |.++.. ......
T Consensus 185 ~i~i~d~dg~~~~~lt~~-~----~~v~~p~wSPDG~~la~~s~------------------------------~~~~~~ 229 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRS-S----QPLMSPAWSPDGSKLAYVSF------------------------------ENKKSQ 229 (429)
T ss_pred EEEEECCCCCCceEeccC-C----CccccceEcCCCCEEEEEEe------------------------------cCCCcE
Confidence 466777766554443221 1 1345678899995 433321 111246
Q ss_pred EEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC
Q 015463 232 VLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE 307 (406)
Q Consensus 232 l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~ 307 (406)
|+.+|..+++.+.+...-.....++++||++.++++.... -.||.+++++.. ...+....+.......++||+
T Consensus 230 i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~ 304 (429)
T PRK01742 230 LVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---PSQLTSGAGNNTEPSWSPDGQ 304 (429)
T ss_pred EEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---eEeeccCCCCcCCEEECCCCC
Confidence 9999998887655543222334688999999888765323 357777765432 222222222233456677777
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.94 E-value=0.33 Score=47.01 Aligned_cols=142 Identities=13% Similarity=0.208 Sum_probs=80.1
Q ss_pred ceEEEEeCCCCcEEEEeCCCcEEEE-eCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccc
Q 015463 133 PLGLRFDKKTGDLYIADAYFGLMKV-GPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPL 211 (406)
Q Consensus 133 p~gi~~d~~~g~L~Vad~~~gl~~~-d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~ 211 (406)
..++...+ .|..++..+..|-+.| |.+++..-..... + ...-.....++++||.|+.+-.
T Consensus 306 V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-~-~s~v~~ts~~fHpDgLifgtgt---------------- 366 (506)
T KOG0289|consen 306 VTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSD-E-TSDVEYTSAAFHPDGLIFGTGT---------------- 366 (506)
T ss_pred ceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEee-c-cccceeEEeeEcCCceEEeccC----------------
Confidence 45778888 7887777777666655 4444432221111 1 1122356789999998877643
Q ss_pred cccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeee
Q 015463 212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF 290 (406)
Q Consensus 212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~ 290 (406)
.+|.|-.||.+.+....-..+...+ ..|+++.+| +.+++++..+.|..+++.- ......|
T Consensus 367 ----------------~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRK--l~n~kt~ 427 (506)
T KOG0289|consen 367 ----------------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRK--LKNFKTI 427 (506)
T ss_pred ----------------CCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehh--hccccee
Confidence 3566777777654421112222222 458888666 4556666666788888752 2233333
Q ss_pred ecCCCC-CCceEECCCCCEEEEE
Q 015463 291 AILPGY-PDNVRTNEKGEFWVAI 312 (406)
Q Consensus 291 ~~l~g~-pd~i~~d~~G~lwv~~ 312 (406)
..-... ...+.+|..|.+.+..
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred eccccccceeEEEcCCCCeEEee
Confidence 211111 2346789999877665
No 114
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.94 E-value=0.57 Score=47.71 Aligned_cols=53 Identities=9% Similarity=0.120 Sum_probs=31.9
Q ss_pred ceEEEEEECC-CCCEEEEEECCCCCe------eeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463 352 LHAMAVKYSP-EGKILQVLEDSKGKV------VKAISEVEEKDGKLWMGSVLMPFVAVYDL 405 (406)
Q Consensus 352 ~~~~v~~~d~-~g~~~~~~~~~~g~~------~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~ 405 (406)
..+.+.++|. +|+++.......... ....+.+...++.||+|+. ...|.-+|.
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~-dG~l~ald~ 423 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAA-DGYFRAFDA 423 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECC-CCeEEEEEC
Confidence 3456888884 588888875431110 0112344556789999985 566666664
No 115
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.07 Score=49.27 Aligned_cols=168 Identities=13% Similarity=0.168 Sum_probs=85.2
Q ss_pred eccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCC--cCCcceEEE
Q 015463 63 KFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEH--ICGRPLGLR 137 (406)
Q Consensus 63 ~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~gi~ 137 (406)
+....+.-||+|.+-.+|+...+.=.+.+++.+.-+ .+...... . ... .... .+| --|++
T Consensus 123 iPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~--~----i~L--------~~~~k~N~G-fEGlA 187 (316)
T COG3204 123 IPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQ--K----IPL--------GTTNKKNKG-FEGLA 187 (316)
T ss_pred ecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccce--E----Eec--------cccCCCCcC-ceeee
Confidence 334456778888887666522333345666666433 21111110 0 000 0000 122 35899
Q ss_pred EeCCCCcEEEEeCCC--cEEEEeCCCCeEEEcccccCC----cccccccceEEcC-CCCEEEEeCCCchhhhcccccccc
Q 015463 138 FDKKTGDLYIADAYF--GLMKVGPEGGLATSLATEAEG----VPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIP 210 (406)
Q Consensus 138 ~d~~~g~L~Vad~~~--gl~~~d~~~~~~~~l~~~~~~----~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~ 210 (406)
.|+.+++||++-..+ +|+.++........-...... .-...+.++.+++ .|++++=.
T Consensus 188 ~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS---------------- 251 (316)
T COG3204 188 WDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLS---------------- 251 (316)
T ss_pred cCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEe----------------
Confidence 999889999998764 677776322111110000000 0122344455553 34444432
Q ss_pred ccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEe---------cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463 211 LQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL---------LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 279 (406)
Q Consensus 211 ~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~---------~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~ 279 (406)
.+...|..+|.+..-...+ ...++.+.||+++++|....++| .+..+++..
T Consensus 252 ----------------~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE--Pnlfy~F~~ 311 (316)
T COG3204 252 ----------------DESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE--PNLFYRFTP 311 (316)
T ss_pred ----------------cCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec--CCcceeccc
Confidence 2235677777664323222 23456788999998887555555 357777764
No 116
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.91 E-value=0.16 Score=50.02 Aligned_cols=151 Identities=15% Similarity=0.068 Sum_probs=95.2
Q ss_pred cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG 143 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g 143 (406)
..++-.|..|+.. .+. +|+|+..+.|++=+-+ .++..... + ...-+|++..+ ..
T Consensus 326 Pe~~G~iRtv~e~-~~d-i~vGTtrN~iL~Gt~~~~f~~~v~g---------------------h-~delwgla~hp-s~ 380 (626)
T KOG2106|consen 326 PEQFGPIRTVAEG-KGD-ILVGTTRNFILQGTLENGFTLTVQG---------------------H-GDELWGLATHP-SK 380 (626)
T ss_pred chhcCCeeEEecC-CCc-EEEeeccceEEEeeecCCceEEEEe---------------------c-ccceeeEEcCC-Ch
Confidence 3444456666664 345 9999988878766544 33333221 1 12357899998 67
Q ss_pred cEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463 144 DLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP 222 (406)
Q Consensus 144 ~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 222 (406)
++++.... +-+..++ + .+. .+..... ....++++++.|.+-+++.
T Consensus 381 ~q~~T~gqdk~v~lW~-~-~k~-~wt~~~~----d~~~~~~fhpsg~va~Gt~--------------------------- 426 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN-D-HKL-EWTKIIE----DPAECADFHPSGVVAVGTA--------------------------- 426 (626)
T ss_pred hheeeccCcceEEEcc-C-Cce-eEEEEec----CceeEeeccCcceEEEeec---------------------------
Confidence 77776655 4455565 2 221 1111111 1245678889886666654
Q ss_pred CcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463 223 IKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g 281 (406)
.|+.+.+|.++.....+...-..-+.+.++|||.++-+.. -.+.|+.|.++.
T Consensus 427 ------~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 427 ------TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS-HDNHIYIYRVSA 478 (626)
T ss_pred ------cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec-CCCeEEEEEECC
Confidence 3899999999876665554444557899999999887764 467888888763
No 117
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.89 E-value=0.15 Score=48.45 Aligned_cols=110 Identities=17% Similarity=0.266 Sum_probs=64.8
Q ss_pred CcEEEEeCC-----CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhcccccccccccccc
Q 015463 143 GDLYIADAY-----FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSS 216 (406)
Q Consensus 143 g~L~Vad~~-----~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e 216 (406)
.++||.|.. .+++.+|.+++++.=... ..+.-.+++++|| .+|++++- +.|..+
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~------~g~~~~~~~spdgk~~y~a~T~--~sR~~r------------ 62 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMID------TGFLGNVALSPDGKTIYVAETF--YSRGTR------------ 62 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEE------EESSEEEEE-TTSSEEEEEEEE--EEETTE------------
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEee------cccCCceeECCCCCEEEEEEEE--Eecccc------------
Confidence 567777763 368899988876432111 1233347788888 57776532 111111
Q ss_pred CCCCCCCcccCCCCeEEEEeCCCCeEEE--ecc------cCCCcceEEEecCCCEEEEEeCC-CCeEEEEEeeC
Q 015463 217 LNDPSPIKITKDTGRVLKYDPTTKQTTV--LLR------NLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLIG 281 (406)
Q Consensus 217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~--~~~------~~~~~ngi~l~~d~~~l~v~~t~-~~~i~~~~~~g 281 (406)
+..+--|-.||.+|-+.+. .+. .....+-.+++.|++++||.+.+ ...|.++++..
T Consensus 63 ---------G~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~ 127 (342)
T PF06433_consen 63 ---------GERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA 127 (342)
T ss_dssp ---------EEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT
T ss_pred ---------ccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCC
Confidence 3333447889998875432 221 13456778999999999998754 35788888763
No 118
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.86 E-value=0.58 Score=46.63 Aligned_cols=137 Identities=17% Similarity=0.193 Sum_probs=82.8
Q ss_pred eEEEEeCCCCc--EEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccc
Q 015463 134 LGLRFDKKTGD--LYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKE 207 (406)
Q Consensus 134 ~gi~~d~~~g~--L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~ 207 (406)
..-.+++ +|+ +++.... ..|+.+|..+++.+.+... .+. .....+.+|| .+.++.+.
T Consensus 191 ~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~g~----~~~~~~SPDG~~la~~~~~----------- 253 (419)
T PRK04043 191 IFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-QGM----LVVSDVSKDGSKLLLTMAP----------- 253 (419)
T ss_pred EeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-CCc----EEeeEECCCCCEEEEEEcc-----------
Confidence 3456787 554 5654433 2499999999987776532 221 1124578888 46666532
Q ss_pred cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCc
Q 015463 208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAG 285 (406)
Q Consensus 208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~ 285 (406)
.+...|+.+|.++++.+.+...-.......++|||+.++++.... ..|+++++++.+.
T Consensus 254 -------------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~- 313 (419)
T PRK04043 254 -------------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV- 313 (419)
T ss_pred -------------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe-
Confidence 123579999998888777654322223456999999888876432 3788888875332
Q ss_pred ceeeeecCCCCCCceEECCCCCEEEE
Q 015463 286 NLEAFAILPGYPDNVRTNEKGEFWVA 311 (406)
Q Consensus 286 ~~~~~~~l~g~pd~i~~d~~G~lwv~ 311 (406)
+.+... |. .+...++||+..+-
T Consensus 314 --~rlt~~-g~-~~~~~SPDG~~Ia~ 335 (419)
T PRK04043 314 --EQVVFH-GK-NNSSVSTYKNYIVY 335 (419)
T ss_pred --EeCccC-CC-cCceECCCCCEEEE
Confidence 222111 21 23467888884433
No 119
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.84 E-value=0.29 Score=48.41 Aligned_cols=202 Identities=14% Similarity=0.143 Sum_probs=105.3
Q ss_pred cccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463 67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (406)
Q Consensus 67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~ 144 (406)
+-+.-.++.+.+.|+.+.+-+.+.....+|.+ .+.++.........+.+.+++.+ +.+| -.+.|.+.+
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia-----~lt~-----g~whP~~k~ 282 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIA-----ELTC-----GCWHPDNKE 282 (641)
T ss_pred cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCcee-----eeec-----cccccCccc
Confidence 34455678888888877777777777778877 55555544433222222222211 1111 134444455
Q ss_pred EEEEeCCCc-EEEEeCC--CCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463 145 LYIADAYFG-LMKVGPE--GGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221 (406)
Q Consensus 145 L~Vad~~~g-l~~~d~~--~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 221 (406)
.++..++.| +..++.. ..+.+++.....+..-..+..-+.++||+++.+
T Consensus 283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa---------------------------- 334 (641)
T KOG0772|consen 283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAA---------------------------- 334 (641)
T ss_pred ceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhh----------------------------
Confidence 565555533 4444443 233444433323322234555678889988444
Q ss_pred CCcccCCCCeEEEEeCCCCeEE--Eec----ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCC
Q 015463 222 PIKITKDTGRVLKYDPTTKQTT--VLL----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG 295 (406)
Q Consensus 222 ~~~~~~~~g~l~~~d~~t~~~~--~~~----~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g 295 (406)
+..+|.|-.++.....+. ... ........|++|.||+.| .+-.....+..+++...+.. ..++.+++.
T Consensus 335 ----gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~kkp-L~~~tgL~t 408 (641)
T KOG0772|consen 335 ----GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL-LSRGFDDTLKVWDLRQFKKP-LNVRTGLPT 408 (641)
T ss_pred ----cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh-hhccCCCceeeeeccccccc-hhhhcCCCc
Confidence 233566777764322111 111 112234679999999866 44445567777777643211 112223321
Q ss_pred -CC-CceEECCCCCEEEEE
Q 015463 296 -YP-DNVRTNEKGEFWVAI 312 (406)
Q Consensus 296 -~p-d~i~~d~~G~lwv~~ 312 (406)
+| .+.+++++-.|.++.
T Consensus 409 ~~~~tdc~FSPd~kli~TG 427 (641)
T KOG0772|consen 409 PFPGTDCCFSPDDKLILTG 427 (641)
T ss_pred cCCCCccccCCCceEEEec
Confidence 22 356788888876664
No 120
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.83 E-value=0.46 Score=45.06 Aligned_cols=146 Identities=18% Similarity=0.238 Sum_probs=92.4
Q ss_pred eEEEEeCCCCcEEEEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccc
Q 015463 134 LGLRFDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPL 211 (406)
Q Consensus 134 ~gi~~d~~~g~L~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~ 211 (406)
..|...+ +|..|+..+. ..|..+|++++....+.... +....-+-..+||...|+.+-
T Consensus 199 tsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g----lgg~slLkwSPdgd~lfaAt~--------------- 258 (445)
T KOG2139|consen 199 TSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKG----LGGFSLLKWSPDGDVLFAATC--------------- 258 (445)
T ss_pred eEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccC----CCceeeEEEcCCCCEEEEecc---------------
Confidence 4678887 7888887665 45999999998776654211 123445678999988887642
Q ss_pred cccccCCCCCCCcccCCCCeEEEEeCCCCe--EEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCC-----C
Q 015463 212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQ--TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK-----A 284 (406)
Q Consensus 212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~--~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~-----~ 284 (406)
+ +++++=..+.. .+...-+-....+-+.+|+|++++++-...-+|+.....+.. .
T Consensus 259 -----------------d-avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~ 320 (445)
T KOG2139|consen 259 -----------------D-AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRP 320 (445)
T ss_pred -----------------c-ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCc
Confidence 1 24443322222 222222222556778999999999998888899998776531 1
Q ss_pred c---ceeeeecC------------CCCCCceEECCCCCEEEEEccCCc
Q 015463 285 G---NLEAFAIL------------PGYPDNVRTNEKGEFWVAIHCRRS 317 (406)
Q Consensus 285 ~---~~~~~~~l------------~g~pd~i~~d~~G~lwv~~~~~~~ 317 (406)
+ ...+.+++ .|-+..++.|+.|...+.+..+..
T Consensus 321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 1 11122232 244667899999998888877644
No 121
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.80 E-value=0.098 Score=51.55 Aligned_cols=225 Identities=15% Similarity=0.153 Sum_probs=116.0
Q ss_pred cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC----ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK 140 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~ 140 (406)
.++-....++++|+.|-.+++|+.|-.|..||-. ....|.... .|+ +.....+.+.+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-----P~E--------------~h~i~sl~ys~ 224 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-----PCE--------------THQINSLQYSV 224 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC-----ccc--------------ccccceeeecC
Confidence 3444455788999999889999999999888854 233332211 121 23345677777
Q ss_pred CCCc-EEEEeCCCcEEEEeCCCCeEEEcccccC------Cc--ccccccceEEcCCC-CEEEEeCCCchhhhcccccccc
Q 015463 141 KTGD-LYIADAYFGLMKVGPEGGLATSLATEAE------GV--PLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIP 210 (406)
Q Consensus 141 ~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~------~~--~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~ 210 (406)
.|+ |.|.........+|.++-++..+..... .. -.-.+++.+..++. ..++|.+.
T Consensus 225 -Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~-------------- 289 (641)
T KOG0772|consen 225 -TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY-------------- 289 (641)
T ss_pred -CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC--------------
Confidence 554 4444433456677777654433221100 00 00122333344432 34444321
Q ss_pred ccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC-----CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCc
Q 015463 211 LQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL-----QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAG 285 (406)
Q Consensus 211 ~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-----~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~ 285 (406)
.++-|+|-++....+..++.... -.+...++++|++. +.+....+.|-.++. +...-
T Consensus 290 ----------------DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~-~~~~v 351 (641)
T KOG0772|consen 290 ----------------DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDK-GSRTV 351 (641)
T ss_pred ----------------CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeec-CCccc
Confidence 11223444444334555553222 12456779999975 455555555555543 33333
Q ss_pred ceeeee---cCCCC-CCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccce
Q 015463 286 NLEAFA---ILPGY-PDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAK 341 (406)
Q Consensus 286 ~~~~~~---~l~g~-pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (406)
+..... +.+|. ...|.++.+|++.++-......-+|.|..+...-.....|+.+..
T Consensus 352 ~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~ 411 (641)
T KOG0772|consen 352 RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP 411 (641)
T ss_pred ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence 322222 23321 346788999998887655555555555555444444445555444
No 122
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.80 E-value=0.36 Score=43.24 Aligned_cols=174 Identities=13% Similarity=0.111 Sum_probs=96.3
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va 148 (406)
..+-+.-+|+.-.+...+..|..|++. -++++... +...+..+...++-.+--+
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-----------------------G~EVlD~~~s~Dnskf~s~ 77 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-----------------------GHEVLDAALSSDNSKFASC 77 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC-----------------------CceeeeccccccccccccC
Confidence 445567789955555566677777876 23333211 2224444444422233333
Q ss_pred eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463 149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD 228 (406)
Q Consensus 149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 228 (406)
...+-+..+|..+|++..-.... ...+|.+.+..+-.+.++.+-
T Consensus 78 GgDk~v~vwDV~TGkv~Rr~rgH----~aqVNtV~fNeesSVv~Sgsf-------------------------------- 121 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVDRRFRGH----LAQVNTVRFNEESSVVASGSF-------------------------------- 121 (307)
T ss_pred CCCceEEEEEcccCeeeeecccc----cceeeEEEecCcceEEEeccc--------------------------------
Confidence 33356999999998764322221 234788888877777776542
Q ss_pred CCeEEEEeCCCCeEEEec---ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCC-ceEECC
Q 015463 229 TGRVLKYDPTTKQTTVLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPD-NVRTNE 304 (406)
Q Consensus 229 ~g~l~~~d~~t~~~~~~~---~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd-~i~~d~ 304 (406)
+..+..+|=.....+.+. +.......|.++ +..+++.+..+++..|++.- | ..+.+.-|.|- .+.+.+
T Consensus 122 D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~---G--~l~sDy~g~pit~vs~s~ 193 (307)
T KOG0316|consen 122 DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRK---G--TLSSDYFGHPITSVSFSK 193 (307)
T ss_pred cceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeec---c--eeehhhcCCcceeEEecC
Confidence 234666666555554432 111122233332 23557777778999999762 2 23334445554 467889
Q ss_pred CCCEEEEE
Q 015463 305 KGEFWVAI 312 (406)
Q Consensus 305 ~G~lwv~~ 312 (406)
+|+.-++.
T Consensus 194 d~nc~La~ 201 (307)
T KOG0316|consen 194 DGNCSLAS 201 (307)
T ss_pred CCCEEEEe
Confidence 99955443
No 123
>PTZ00421 coronin; Provisional
Probab=96.79 E-value=0.4 Score=48.84 Aligned_cols=160 Identities=12% Similarity=0.113 Sum_probs=89.6
Q ss_pred CcceEEEcCCC-CeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463 70 GPESMAFDPLG-RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (406)
Q Consensus 70 gpe~i~~d~~g-~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va 148 (406)
...++++.+++ +.+.+++.|+.|..||...-....... .......++++.+ +|.+.++
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~--------------------~h~~~V~sla~sp-dG~lLat 185 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK--------------------CHSDQITSLEWNL-DGSLLCT 185 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc--------------------CCCCceEEEEEEC-CCCEEEE
Confidence 44678888864 568889999999999976211111110 0123356889998 6776554
Q ss_pred eC-CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463 149 DA-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227 (406)
Q Consensus 149 d~-~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 227 (406)
.. .+.|..+|+.+++...-.....+ .....+...+++...++...+ ..
T Consensus 186 gs~Dg~IrIwD~rsg~~v~tl~~H~~---~~~~~~~w~~~~~~ivt~G~s----------------------------~s 234 (493)
T PTZ00421 186 TSKDKKLNIIDPRDGTIVSSVEAHAS---AKSQRCLWAKRKDLIITLGCS----------------------------KS 234 (493)
T ss_pred ecCCCEEEEEECCCCcEEEEEecCCC---CcceEEEEcCCCCeEEEEecC----------------------------CC
Confidence 44 45688999887754221111111 112234455566566654211 11
Q ss_pred CCCeEEEEeCCCCeEEEecccCCC---cceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463 228 DTGRVLKYDPTTKQTTVLLRNLQF---PNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 228 ~~g~l~~~d~~t~~~~~~~~~~~~---~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g 281 (406)
.++.+..||..+.........+.. .....+++|++.++++..+.+.|..|++..
T Consensus 235 ~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 235 QQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred CCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 246688888764321111111111 122357789988887765567788888764
No 124
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.78 E-value=0.44 Score=44.75 Aligned_cols=145 Identities=19% Similarity=0.196 Sum_probs=75.8
Q ss_pred CCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEE----------Ec-ccc--cCCcccccccceEEcCCCCEEEEeCC
Q 015463 130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLAT----------SL-ATE--AEGVPLRFTNDLDIDDEGNVYFTDSS 196 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~----------~l-~~~--~~~~~~~~~~~l~~d~dG~ly~t~~~ 196 (406)
..+|.|++.. .+.||+++. ..|+++-....... .+ ... ..| .-.+.++++ .++.+||.++-
T Consensus 48 F~r~MGl~~~--~~~l~~~t~-~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TG--didiHdia~-~~~~l~fVNT~ 121 (335)
T TIGR03032 48 FPRPMGLAVS--PQSLTLGTR-YQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTG--DIDAHDLAL-GAGRLLFVNTL 121 (335)
T ss_pred cCccceeeee--CCeEEEEEc-ceeEEcccccccccccccCCCCCeEEeeeeeeecc--Ccchhheee-cCCcEEEEECc
Confidence 5679999987 478999986 47888821111110 00 000 011 124567888 57788887642
Q ss_pred CchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEe----------cccCCCcceEEEecCCCEEEE
Q 015463 197 TNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL----------LRNLQFPNGLSLSKDKSFFVF 266 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~----------~~~~~~~ngi~l~~d~~~l~v 266 (406)
-..|..+++. -.+... .+.-..-||+|+. |++--||
T Consensus 122 --------------------------------fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yV 167 (335)
T TIGR03032 122 --------------------------------FSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYV 167 (335)
T ss_pred --------------------------------ceeEEEECCC-CccccccCCccccccCccCceeecceeee-CCeEEEE
Confidence 1346666654 333222 1223456999995 7878887
Q ss_pred EeCCCC---eEEEEEee-CC---CCcceeeeecCCCCCCceEECCCCCEEEEEccC
Q 015463 267 CEGSVG---RLHKYWLI-GE---KAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR 315 (406)
Q Consensus 267 ~~t~~~---~i~~~~~~-g~---~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~ 315 (406)
+.-+.. .-||=... |. ...+-+++.+.-.+|.+-+. -+|++|+.....
T Consensus 168 Ta~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRW-hdgrLwvldsgt 222 (335)
T TIGR03032 168 TALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRW-YQGKLWLLNSGR 222 (335)
T ss_pred EEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcE-eCCeEEEEECCC
Confidence 754332 22221111 00 00111233322234555555 478999988654
No 125
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.78 E-value=0.46 Score=44.23 Aligned_cols=178 Identities=15% Similarity=0.084 Sum_probs=103.0
Q ss_pred cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC---cEEE
Q 015463 71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG---DLYI 147 (406)
Q Consensus 71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g---~L~V 147 (406)
--++|+ +|..+-.|+.|.+|..||.....+... ..+..++...+.|++ .- .|.-
T Consensus 46 itavAV--s~~~~aSGssDetI~IYDm~k~~qlg~--------------------ll~HagsitaL~F~~-~~S~shLlS 102 (362)
T KOG0294|consen 46 ITALAV--SGPYVASGSSDETIHIYDMRKRKQLGI--------------------LLSHAGSITALKFYP-PLSKSHLLS 102 (362)
T ss_pred eeEEEe--cceeEeccCCCCcEEEEeccchhhhcc--------------------eeccccceEEEEecC-Ccchhheee
Confidence 356666 455455677889999998762222111 111146667777776 33 5666
Q ss_pred EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463 148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227 (406)
Q Consensus 148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 227 (406)
|...+.|..++.. ....+... .+-. ..+++|++.|.|.|-++...
T Consensus 103 ~sdDG~i~iw~~~--~W~~~~sl-K~H~-~~Vt~lsiHPS~KLALsVg~------------------------------- 147 (362)
T KOG0294|consen 103 GSDDGHIIIWRVG--SWELLKSL-KAHK-GQVTDLSIHPSGKLALSVGG------------------------------- 147 (362)
T ss_pred ecCCCcEEEEEcC--CeEEeeee-cccc-cccceeEecCCCceEEEEcC-------------------------------
Confidence 6655667777754 33333222 1211 23899999999999888643
Q ss_pred CCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec--CCCCCCceEECCC
Q 015463 228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPGYPDNVRTNEK 305 (406)
Q Consensus 228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~--l~g~pd~i~~d~~ 305 (406)
++.|--+|.-+|+......--..+.-|.+++.|+..++.- +++|..|.++.. .+|.. .+--+-++.++..
T Consensus 148 -D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A-----~v~~~i~~~~r~l~~~~l~~ 219 (362)
T KOG0294|consen 148 -DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNA-----SVFREIENPKRILCATFLDG 219 (362)
T ss_pred -CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe--ccEEEEEecccH-----hHhhhhhccccceeeeecCC
Confidence 2345556666565444433334455688999999777764 568888876532 22221 1222334455555
Q ss_pred CCEEEEEcc
Q 015463 306 GEFWVAIHC 314 (406)
Q Consensus 306 G~lwv~~~~ 314 (406)
+.+.||...
T Consensus 220 ~~L~vG~d~ 228 (362)
T KOG0294|consen 220 SELLVGGDN 228 (362)
T ss_pred ceEEEecCC
Confidence 666666543
No 126
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.73 E-value=0.33 Score=49.42 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=42.8
Q ss_pred CCcEEEEeCCCcEEEEeCCCCeEE-EcccccC---CcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463 142 TGDLYIADAYFGLMKVGPEGGLAT-SLATEAE---GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL 217 (406)
Q Consensus 142 ~g~L~Vad~~~gl~~~d~~~~~~~-~l~~~~~---~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~ 217 (406)
++.+|+++....|+.+|.++|+.. ....... ..+......+++..++.+|+++..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~--------------------- 119 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFD--------------------- 119 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCC---------------------
Confidence 689999988888999999888642 1111100 000001122334334789998743
Q ss_pred CCCCCCcccCCCCeEEEEeCCCCeEE
Q 015463 218 NDPSPIKITKDTGRVLKYDPTTKQTT 243 (406)
Q Consensus 218 ~~~~~~~~~~~~g~l~~~d~~t~~~~ 243 (406)
|.|+.+|.+||+..
T Consensus 120 ------------g~v~AlD~~TG~~~ 133 (488)
T cd00216 120 ------------GRLVALDAETGKQV 133 (488)
T ss_pred ------------CeEEEEECCCCCEe
Confidence 78999999988754
No 127
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.70 E-value=0.075 Score=48.18 Aligned_cols=142 Identities=17% Similarity=0.172 Sum_probs=84.6
Q ss_pred CCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEE
Q 015463 80 GRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMK 156 (406)
Q Consensus 80 g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~ 156 (406)
|+.+.+|.++|++|.++-+ +.-.+... +...-+| ..|.+.|-+|.++.++.++.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--------------------~~vk~~a---~~d~~~glIycgshd~~~ya 119 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--------------------ETVKVRA---QCDFDGGLIYCGSHDGNFYA 119 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeeh--------------------hhhccce---EEcCCCceEEEecCCCcEEE
Confidence 4558889999999998765 21122111 1111222 23444688899998888999
Q ss_pred EeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEE
Q 015463 157 VGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKY 235 (406)
Q Consensus 157 ~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~ 235 (406)
+|+.+... .+...-.|..+..| ++++ +|.||++..+ |+|++.
T Consensus 120 lD~~~~~c-VykskcgG~~f~sP---~i~~g~~sly~a~t~---------------------------------G~vlav 162 (354)
T KOG4649|consen 120 LDPKTYGC-VYKSKCGGGTFVSP---VIAPGDGSLYAAITA---------------------------------GAVLAV 162 (354)
T ss_pred ecccccce-EEecccCCceeccc---eecCCCceEEEEecc---------------------------------ceEEEE
Confidence 99986532 22233334333333 6666 8899999864 889999
Q ss_pred eCCCCeEEEec-c---c--CCCcc----eEEE-ecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463 236 DPTTKQTTVLL-R---N--LQFPN----GLSL-SKDKSFFVFCEGSVGRLHKYWLIGE 282 (406)
Q Consensus 236 d~~t~~~~~~~-~---~--~~~~n----gi~l-~~d~~~l~v~~t~~~~i~~~~~~g~ 282 (406)
++++.....+. . + +..|. .+.+ .-||..+-+.+. +..|||+..+|+
T Consensus 163 t~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~s-G~qvwr~~t~Gp 219 (354)
T KOG4649|consen 163 TKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDES-GRQVWRPATKGP 219 (354)
T ss_pred ccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCC-CcEEEeecCCCc
Confidence 99887555442 1 1 11221 1211 136766656544 467888877664
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.65 E-value=0.062 Score=52.16 Aligned_cols=182 Identities=15% Similarity=0.171 Sum_probs=105.8
Q ss_pred CcceEEEcCCCCeeEEEecCCEEEEEeCC--c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463 70 GPESMAFDPLGRGPYTGVADGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~ 146 (406)
+-|.+.+.++++.|.+...+|.|+.+... . ++.+. ..|...+++|+.+...||
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K------------------------ieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK------------------------IEGVVSDFTFSSDSKELL 360 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee------------------------eccEEeeEEEecCCcEEE
Confidence 34677788888866677778888887654 1 11111 135677889988455677
Q ss_pred EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463 147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT 226 (406)
Q Consensus 147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 226 (406)
++..++.++.+|.....+...-.. +|. ..-..++...+|. |+++.
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D-~G~--v~gts~~~S~ng~-ylA~G------------------------------- 405 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVD-DGS--VHGTSLCISLNGS-YLATG------------------------------- 405 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEee-cCc--cceeeeeecCCCc-eEEec-------------------------------
Confidence 776667899999887654332221 121 1234567777887 55552
Q ss_pred CCCCeEEEEeCCCCeE----EEe--cccC-CCcceEEEecCCCEEEEEeCCC-CeEEEEEeeCCCCcceeeeecCC----
Q 015463 227 KDTGRVLKYDPTTKQT----TVL--LRNL-QFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFAILP---- 294 (406)
Q Consensus 227 ~~~g~l~~~d~~t~~~----~~~--~~~~-~~~ngi~l~~d~~~l~v~~t~~-~~i~~~~~~g~~~~~~~~~~~l~---- 294 (406)
...|-|-.||.++-.. +.+ ...+ ...+.+++++|.+.|-++.... +.+..+.+ ....+|.+.|
T Consensus 406 S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-----PS~TVFsNfP~~n~ 480 (514)
T KOG2055|consen 406 SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-----PSCTVFSNFPTSNT 480 (514)
T ss_pred cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-----cceeeeccCCCCCC
Confidence 2347777887553211 111 1222 2235688999998887775543 23433433 2234454422
Q ss_pred --CCCCceEECCCCCEE-EEEccC
Q 015463 295 --GYPDNVRTNEKGEFW-VAIHCR 315 (406)
Q Consensus 295 --g~pd~i~~d~~G~lw-v~~~~~ 315 (406)
|++..+++++.|.+. +|.-.+
T Consensus 481 ~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 481 KVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred cccceEEEEecCCCceEEeecCCC
Confidence 456678899877644 444444
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.58 E-value=1.1 Score=45.88 Aligned_cols=158 Identities=13% Similarity=0.036 Sum_probs=101.4
Q ss_pred cceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEE
Q 015463 71 PESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIA 148 (406)
Q Consensus 71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Va 148 (406)
-++|+..+.+..+-+|+.+|-++.+... ..-++... ..-..+|.+.+.+++ ++. |..+
T Consensus 113 IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~-------------------l~rq~sRvLslsw~~-~~~~i~~G 172 (691)
T KOG2048|consen 113 IWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS-------------------LMRQKSRVLSLSWNP-TGTKIAGG 172 (691)
T ss_pred eeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-------------------cccccceEEEEEecC-CccEEEec
Confidence 4888888888878889999966666544 22222111 111148899999999 666 7777
Q ss_pred eCCCcEEEEeCCCCeEEEccc-ccCCc---ccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463 149 DAYFGLMKVGPEGGLATSLAT-EAEGV---PLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK 224 (406)
Q Consensus 149 d~~~gl~~~d~~~~~~~~l~~-~~~~~---~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 224 (406)
..++-|..+|...+....+.+ ..++. ....+-++.+-+++.|--+|+.
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~---------------------------- 224 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSA---------------------------- 224 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCC----------------------------
Confidence 655448888987765433221 11111 2234566666688888777764
Q ss_pred ccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463 225 ITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 282 (406)
Q Consensus 225 ~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~ 282 (406)
|.|-.+|++.+....-. -.......++.+++++.++.+.. ..+|..|...+.
T Consensus 225 -----G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGv-d~~ii~~~~~~~ 277 (691)
T KOG2048|consen 225 -----GTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGV-DPKIIQYSLTTN 277 (691)
T ss_pred -----ceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccC-CCceEEEEecCC
Confidence 88999999877542211 11234457788888888877654 678999988764
No 130
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.57 E-value=0.005 Score=35.93 Aligned_cols=28 Identities=14% Similarity=0.483 Sum_probs=23.6
Q ss_pred CCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 015463 249 LQFPNGLSLSKDKSFFVFCEGSVGRLHKY 277 (406)
Q Consensus 249 ~~~~ngi~l~~d~~~l~v~~t~~~~i~~~ 277 (406)
+..|.|++++++| .+||+++.++||++|
T Consensus 1 f~~P~gvav~~~g-~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDG-NIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCC-CEEEEECCCCEEEEC
Confidence 3578999999666 599999999999875
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.57 E-value=0.81 Score=48.34 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=95.3
Q ss_pred cccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463 67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (406)
Q Consensus 67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~ 146 (406)
...|--.|++|++|.-+++...+|-|.+|+...-.+ ....+| ..+....+++.. .+.+.
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------~P~ti~-------------~~g~~v~~ia~~--s~~f~ 70 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------EPETID-------------ISGELVSSIACY--SNHFL 70 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------CCchhh-------------ccCceeEEEeec--ccceE
Confidence 345677899999999888888899888886541000 000011 011223456655 34666
Q ss_pred EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463 147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT 226 (406)
Q Consensus 147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 226 (406)
.++..+-+.++....++...+...+. .-+++++++.+|+..++.++
T Consensus 71 ~~s~~~tv~~y~fps~~~~~iL~Rft----lp~r~~~v~g~g~~iaagsd------------------------------ 116 (933)
T KOG1274|consen 71 TGSEQNTVLRYKFPSGEEDTILARFT----LPIRDLAVSGSGKMIAAGSD------------------------------ 116 (933)
T ss_pred EeeccceEEEeeCCCCCccceeeeee----ccceEEEEecCCcEEEeecC------------------------------
Confidence 77666777777766555443322211 12567899999977776543
Q ss_pred CCCCeEEEEeCCCCeEEEecccCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463 227 KDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 227 ~~~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i~~~~~~g 281 (406)
+-.|-..+..+...+....+...+ -++.++|.+++|-++.. .+.|..|++..
T Consensus 117 --D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-dG~v~iw~~~~ 169 (933)
T KOG1274|consen 117 --DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-DGKVQIWDLQD 169 (933)
T ss_pred --ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec-CceEEEEEccc
Confidence 112555555544444444454444 47889999998877755 68888888763
No 132
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.47 E-value=0.97 Score=44.16 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=79.0
Q ss_pred EcCCCCeeEEEecCCEEEEEeCCcee-EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcE
Q 015463 76 FDPLGRGPYTGVADGRILFWDGLKWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL 154 (406)
Q Consensus 76 ~d~~g~~ly~g~~~g~I~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl 154 (406)
.+.+|+ +|+++.+|.|+-++.+... ......... ...++.|. . .. +|++|+++....+
T Consensus 65 ~~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~----------------~~~~~~~~--~-~~-~G~i~~g~~~g~~ 123 (370)
T COG1520 65 ADGDGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGA----------------VAQLSGPI--L-GS-DGKIYVGSWDGKL 123 (370)
T ss_pred EeeCCe-EEEecCCCcEEEEeCCCCcEEecccCcCc----------------ceeccCce--E-Ee-CCeEEEecccceE
Confidence 445777 9999999999999988222 221111000 01122232 2 22 6899999876559
Q ss_pred EEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEE
Q 015463 155 MKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLK 234 (406)
Q Consensus 155 ~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~ 234 (406)
+.+|.++|+..-... ..+. .. ...-++-.+|.+|+.+. +|.++.
T Consensus 124 y~ld~~~G~~~W~~~-~~~~-~~-~~~~~v~~~~~v~~~s~---------------------------------~g~~~a 167 (370)
T COG1520 124 YALDASTGTLVWSRN-VGGS-PY-YASPPVVGDGTVYVGTD---------------------------------DGHLYA 167 (370)
T ss_pred EEEECCCCcEEEEEe-cCCC-eE-EecCcEEcCcEEEEecC---------------------------------CCeEEE
Confidence 999996665322111 1121 11 11223445788888852 277999
Q ss_pred EeCCCCeEEEecc-----cCCCcceEEEecCCCEEEEEeCC-CCeEEEEEee
Q 015463 235 YDPTTKQTTVLLR-----NLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLI 280 (406)
Q Consensus 235 ~d~~t~~~~~~~~-----~~~~~ngi~l~~d~~~l~v~~t~-~~~i~~~~~~ 280 (406)
+|.++|+..--.+ ......... ..++ .+|+.... ...++.++..
T Consensus 168 l~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~-~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 168 LNADTGTLKWTYETPAPLSLSIYGSPA-IASG-TVYVGSDGYDGILYALNAE 217 (370)
T ss_pred EEccCCcEEEEEecCCccccccccCce-eecc-eEEEecCCCcceEEEEEcc
Confidence 9999886533211 111112222 2233 46665442 3478888874
No 133
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.47 E-value=0.11 Score=50.61 Aligned_cols=157 Identities=13% Similarity=0.209 Sum_probs=98.7
Q ss_pred cccceeccCcccCcceEEEcC-CCCeeEEEecCCEEEEEeCC----ceeEEEeecCCCccccCCCCCcccccccCCcCCc
Q 015463 58 QNSEIKFLNQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGR 132 (406)
Q Consensus 58 ~~~~~~~~~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (406)
.+....+.|.-.|..++.+-+ .+.++..+..++.|+.|+.- -+++|... ..
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH------------------------~k 259 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH------------------------RK 259 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc------------------------hh
Confidence 344456778888888888887 78877788889999988743 22222111 11
Q ss_pred -ceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccc
Q 015463 133 -PLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENI 209 (406)
Q Consensus 133 -p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~ 209 (406)
...+++.. +|.-+.+.+. .-|-.+|.++|+...-... ..-|.++-+.+|+ +++++-.+
T Consensus 260 ~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-----~~~~~cvkf~pd~~n~fl~G~s------------- 320 (503)
T KOG0282|consen 260 PVRDASFNN-CGTSFLSASFDRFLKLWDTETGQVLSRFHL-----DKVPTCVKFHPDNQNIFLVGGS------------- 320 (503)
T ss_pred hhhhhhccc-cCCeeeeeecceeeeeeccccceEEEEEec-----CCCceeeecCCCCCcEEEEecC-------------
Confidence 23456665 5554444444 5578899999976542221 1246677788877 78777433
Q ss_pred cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEE-ecccCCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 015463 210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY 277 (406)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~ 277 (406)
+++|..+|..++++.. +...+...+.|.+-++++.. ++.+....+..+
T Consensus 321 -------------------d~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF-issSDdks~riW 369 (503)
T KOG0282|consen 321 -------------------DKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF-ISSSDDKSVRIW 369 (503)
T ss_pred -------------------CCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE-eeeccCccEEEE
Confidence 5889999998887422 23445666778887777654 444444444333
No 134
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.45 E-value=0.22 Score=47.93 Aligned_cols=156 Identities=16% Similarity=0.207 Sum_probs=82.2
Q ss_pred CcceEEEEeCCCCcEEEEeCCCc------EEEEeCCC-----CeEEEcc----cccCCcccc----cccceEEcCCCCEE
Q 015463 131 GRPLGLRFDKKTGDLYIADAYFG------LMKVGPEG-----GLATSLA----TEAEGVPLR----FTNDLDIDDEGNVY 191 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~~g------l~~~d~~~-----~~~~~l~----~~~~~~~~~----~~~~l~~d~dG~ly 191 (406)
|.--||.++++++.+|....... ++.++... +.++... ....|.++. .+.+|++.++|.+|
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 33468899864677665544444 56555432 1121111 112233332 56689998899999
Q ss_pred EEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeE-EEe-c-ccC-------------CCcceE
Q 015463 192 FTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQT-TVL-L-RNL-------------QFPNGL 255 (406)
Q Consensus 192 ~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~-~-~~~-------------~~~ngi 255 (406)
+++-.... .....+|++|+++ |+. +.+ . ..+ ....++
T Consensus 100 is~E~~~~--------------------------~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~l 152 (326)
T PF13449_consen 100 ISSEGGRT--------------------------GGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGL 152 (326)
T ss_pred EEeCCccC--------------------------CCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEE
Confidence 99843100 0112568899887 443 322 1 111 122479
Q ss_pred EEecCCCEEEEEeCCC---------------CeEEEEEeeCCCCcceeeee-cCC--------CCCCceEECCCCCEEEE
Q 015463 256 SLSKDKSFFVFCEGSV---------------GRLHKYWLIGEKAGNLEAFA-ILP--------GYPDNVRTNEKGEFWVA 311 (406)
Q Consensus 256 ~l~~d~~~l~v~~t~~---------------~~i~~~~~~g~~~~~~~~~~-~l~--------g~pd~i~~d~~G~lwv~ 311 (406)
++++|++.+|++.... .||++|+...+... ...|. .+. .-+..+..-++|+|+|-
T Consensus 153 a~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~-~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 153 AVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP-VAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred EECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCcc-ceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 9999999777764332 36777776531111 12222 221 11233455567888886
Q ss_pred Ecc
Q 015463 312 IHC 314 (406)
Q Consensus 312 ~~~ 314 (406)
-..
T Consensus 232 ER~ 234 (326)
T PF13449_consen 232 ERD 234 (326)
T ss_pred Ecc
Confidence 543
No 135
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.41 E-value=0.72 Score=41.94 Aligned_cols=192 Identities=16% Similarity=0.165 Sum_probs=103.3
Q ss_pred eeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463 62 IKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK 141 (406)
Q Consensus 62 ~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~ 141 (406)
+...++..--.++++..+|..+-.|+.++.+..++.+.. .+...-..++ ..+..-.++.++.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~g-----------------h~~svdql~w~~~ 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRG-----------------HTDSVDQLCWDPK 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccC-----------------CCcchhhheeCCC
Confidence 334556667789999999998888999988888776521 1111100000 0112233455553
Q ss_pred CCcEE-EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463 142 TGDLY-IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP 220 (406)
Q Consensus 142 ~g~L~-Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~ 220 (406)
...++ .+.+++.+.++|...++...-... .+. -..+...++|+..+..
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i~~-~~e----ni~i~wsp~g~~~~~~-------------------------- 124 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARIET-KGE----NINITWSPDGEYIAVG-------------------------- 124 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEeec-cCc----ceEEEEcCCCCEEEEe--------------------------
Confidence 44444 444456788888776654322111 111 0123444555332221
Q ss_pred CCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCc-
Q 015463 221 SPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN- 299 (406)
Q Consensus 221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~- 299 (406)
..+..|-.+|..+.+...-.+...+.|-+++..+++ +++.+++.+.|..+.-- ..+.+..+...|.|
T Consensus 125 ------~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyp-----sLkpv~si~AH~snC 192 (313)
T KOG1407|consen 125 ------NKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND-LFFLTNGLGCVEILSYP-----SLKPVQSIKAHPSNC 192 (313)
T ss_pred ------cCcccEEEEEecccceeehhcccceeeeeeecCCCC-EEEEecCCceEEEEecc-----ccccccccccCCcce
Confidence 123457777766544433333344567788886676 55666666766554321 22333334445665
Q ss_pred --eEECCCCCEEEEEcc
Q 015463 300 --VRTNEKGEFWVAIHC 314 (406)
Q Consensus 300 --i~~d~~G~lwv~~~~ 314 (406)
|.+|++|+.+.....
T Consensus 193 icI~f~p~GryfA~GsA 209 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSA 209 (313)
T ss_pred EEEEECCCCceEeeccc
Confidence 568999997765443
No 136
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.31 E-value=1.2 Score=43.42 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=25.4
Q ss_pred CCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 250 QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 250 ~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
..+.|++.+.....||++|. ...||+|..+
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Ae 237 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEE-DVGIWRYDAE 237 (381)
T ss_dssp S-EEEEEEETTTTEEEEEET-TTEEEEEESS
T ss_pred CcceEEEEecccCCEEEecC-ccEEEEEecC
Confidence 46789999988889999997 4799999977
No 137
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.31 E-value=0.62 Score=45.63 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=41.9
Q ss_pred CcceEEEecCC------CEEEEEeCCCCeEEEEEeeCCCCcceeeee--cCCCCCCceEECCCCCEEEEEcc
Q 015463 251 FPNGLSLSKDK------SFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--ILPGYPDNVRTNEKGEFWVAIHC 314 (406)
Q Consensus 251 ~~ngi~l~~d~------~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~--~l~g~pd~i~~d~~G~lwv~~~~ 314 (406)
.|.|+++.... +.++|.......+.+...+|...-..+-|. +..|-|-++++.+||.|++++..
T Consensus 315 ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~ 386 (399)
T COG2133 315 APSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ 386 (399)
T ss_pred ccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC
Confidence 45788887431 357888776655666665543111222222 34578999999999999999865
No 138
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=96.27 E-value=0.12 Score=46.63 Aligned_cols=137 Identities=12% Similarity=0.064 Sum_probs=77.3
Q ss_pred EEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463 136 LRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS 215 (406)
Q Consensus 136 i~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~ 215 (406)
+.+...+..+.-+...+.+..+|..+++...-... ...++++.+..||.|......
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-----~s~VtSlEvs~dG~ilTia~g------------------- 204 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-----NSPVTSLEVSQDGRILTIAYG------------------- 204 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcEEEEEec-----CCCCcceeeccCCCEEEEecC-------------------
Confidence 44555355565554457888899888754321111 134778899999988766532
Q ss_pred cCCCCCCCcccCCCCeEEEEeCCCCeEEEec--ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-c
Q 015463 216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-I 292 (406)
Q Consensus 216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~ 292 (406)
+.|..+|+++ +..+. +--...+.-.|.|+. .+||+.-....+++|+-.... ..+.+. .
T Consensus 205 --------------ssV~Fwdaks--f~~lKs~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge--Ei~~~nkg 265 (334)
T KOG0278|consen 205 --------------SSVKFWDAKS--FGLLKSYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE--EIGSYNKG 265 (334)
T ss_pred --------------ceeEEecccc--ccceeeccCccccccccccCCC-ceEEecCcceEEEEEeccCCc--eeeecccC
Confidence 4577777754 33322 111223445588877 467877666778888865321 111221 1
Q ss_pred CCCCCCceEECCCCCEEEEEccC
Q 015463 293 LPGYPDNVRTNEKGEFWVAIHCR 315 (406)
Q Consensus 293 l~g~pd~i~~d~~G~lwv~~~~~ 315 (406)
-+|---.+++.++|.+|.+....
T Consensus 266 h~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 266 HFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred CCCceEEEEECCCCceeeccCCC
Confidence 12222345667777777665443
No 139
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.25 E-value=1.5 Score=43.91 Aligned_cols=119 Identities=14% Similarity=0.029 Sum_probs=66.0
Q ss_pred cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC---E-EEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463 153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN---V-YFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD 228 (406)
Q Consensus 153 gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~---l-y~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 228 (406)
.|+.+|.+++..+.+... .... ..-...+||+ + |++.. .+
T Consensus 166 ~l~~~d~dG~~~~~lt~~--~~~~---~sP~wSPDG~~~~~~y~S~~-------------------------------~g 209 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQE--HSLS---ITPTWMHIGSGFPYLYVSYK-------------------------------LG 209 (428)
T ss_pred eEEEEcCCCCCceEcccC--CCCc---ccceEccCCCceEEEEEEcc-------------------------------CC
Confidence 588888887766665432 1111 2237788884 3 23331 12
Q ss_pred CCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEE--EeeCCCCcceeeeec-CCCCCCceEEC
Q 015463 229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKY--WLIGEKAGNLEAFAI-LPGYPDNVRTN 303 (406)
Q Consensus 229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~--~~~g~~~~~~~~~~~-l~g~pd~i~~d 303 (406)
...|+.++.++++.+.+...-......+++|||+.+.++... ...++.. ++.....+..+.+.. ..+.....+.+
T Consensus 210 ~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 210 VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 346999999988777665422223357899999988877642 2245553 443221222222222 12223346778
Q ss_pred CCCC
Q 015463 304 EKGE 307 (406)
Q Consensus 304 ~~G~ 307 (406)
+||+
T Consensus 290 PDG~ 293 (428)
T PRK01029 290 PDGT 293 (428)
T ss_pred CCCC
Confidence 8887
No 140
>PRK13684 Ycf48-like protein; Provisional
Probab=96.23 E-value=1.2 Score=42.84 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=38.3
Q ss_pred CeEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCCCceEECCCCC
Q 015463 230 GRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGE 307 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~pd~i~~d~~G~ 307 (406)
|.|++=+-.....+.+.... ...+++++.+++..+ ++. ..+.+++-..++. .+.+... .......++.+.++|+
T Consensus 152 G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v-~~g-~~G~i~~s~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~ 227 (334)
T PRK13684 152 GAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYV-AVS-SRGNFYSTWEPGQ--TAWTPHQRNSSRRLQSMGFQPDGN 227 (334)
T ss_pred ceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEE-EEe-CCceEEEEcCCCC--CeEEEeeCCCcccceeeeEcCCCC
Confidence 55666554434444443222 223567777777544 332 2456655422221 1111111 1111234566667788
Q ss_pred EEEEEccC
Q 015463 308 FWVAIHCR 315 (406)
Q Consensus 308 lwv~~~~~ 315 (406)
+|+....+
T Consensus 228 ~~~vg~~G 235 (334)
T PRK13684 228 LWMLARGG 235 (334)
T ss_pred EEEEecCC
Confidence 88765544
No 141
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.19 E-value=1 Score=41.58 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=98.0
Q ss_pred ccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceE
Q 015463 59 NSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLG 135 (406)
Q Consensus 59 ~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g 135 (406)
+..+.+.+.--.-.+..+-+|++ |.|++.|.....||-+ +.+.|. . ..+...+
T Consensus 136 ~v~r~l~gHtgylScC~f~dD~~-ilT~SGD~TCalWDie~g~~~~~f~---G--------------------H~gDV~s 191 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFLDDNH-ILTGSGDMTCALWDIETGQQTQVFH---G--------------------HTGDVMS 191 (343)
T ss_pred eeeeeecCccceeEEEEEcCCCc-eEecCCCceEEEEEcccceEEEEec---C--------------------CcccEEE
Confidence 34444455444445555656787 9999999999999977 222221 0 1356788
Q ss_pred EEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463 136 LRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC 214 (406)
Q Consensus 136 i~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~ 214 (406)
|.+.|.+++.||.-.- .--..+|...+....- +.|- -..+|.+.+-|+|.-+.+-+.
T Consensus 192 lsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt---F~gh-esDINsv~ffP~G~afatGSD------------------ 249 (343)
T KOG0286|consen 192 LSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT---FEGH-ESDINSVRFFPSGDAFATGSD------------------ 249 (343)
T ss_pred EecCCCCCCeEEecccccceeeeeccCcceeEe---eccc-ccccceEEEccCCCeeeecCC------------------
Confidence 8888867888887543 3456677665543221 1221 235889999999988887543
Q ss_pred ccCCCCCCCcccCCCCeEEEEeCCCC-eEEEecc--cCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 015463 215 SSLNDPSPIKITKDTGRVLKYDPTTK-QTTVLLR--NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 278 (406)
Q Consensus 215 ~e~~~~~~~~~~~~~g~l~~~d~~t~-~~~~~~~--~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~ 278 (406)
++..-.||.... ++..+.. .....+.+++|..|+.|+.. .....+.+++
T Consensus 250 --------------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfag-y~d~~c~vWD 301 (343)
T KOG0286|consen 250 --------------DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAG-YDDFTCNVWD 301 (343)
T ss_pred --------------CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEee-ecCCceeEee
Confidence 244444565543 3444432 13345789999999866554 4456777766
No 142
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.19 E-value=0.28 Score=46.74 Aligned_cols=213 Identities=15% Similarity=0.140 Sum_probs=113.4
Q ss_pred cceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcc--ccCCCCCcccccccCCcCCcceE
Q 015463 60 SEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSE--LCNPKPIATSYLKNEHICGRPLG 135 (406)
Q Consensus 60 ~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~g 135 (406)
..+...+......++.+..+|- +|+|+.|++|..|+.. ..-........+-. .|..... -..-..+++...|..
T Consensus 239 ~~~~lsgHT~~VTCvrwGG~gl-iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~-LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 239 CVRTLSGHTASVTCVRWGGEGL-IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV-LRTGAFDHTGRKPKS 316 (480)
T ss_pred EEEEeccCccceEEEEEcCCce-EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh-hhccccccccccCCC
Confidence 3444455555667888876774 9999999999888755 11110000000000 0100000 000001111111111
Q ss_pred E------------EEeCCCCcEEE-EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhh
Q 015463 136 L------------RFDKKTGDLYI-ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRR 202 (406)
Q Consensus 136 i------------~~d~~~g~L~V-ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~ 202 (406)
. +..++.++-.| +..+..++.+++...+ +.+.. ..| -...+|.+.+.|||++..+.+-
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-kpi~r-mtg-Hq~lVn~V~fSPd~r~IASaSF------ 387 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-KPITR-MTG-HQALVNHVSFSPDGRYIASASF------ 387 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-cchhh-hhc-hhhheeeEEECCCccEEEEeec------
Confidence 0 00011233344 4334678888875332 11111 111 1235899999999976665432
Q ss_pred ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463 203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g 281 (406)
+..+-.+|..+|++..-..+ .....-++++.|.+ |+|+.+....+..+++..
T Consensus 388 --------------------------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 388 --------------------------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred --------------------------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeee
Confidence 23466777788876443333 33345789999885 668877667777777653
Q ss_pred CCCcceeeeecCCCCCCceE---ECCCCCEEEEEccC
Q 015463 282 EKAGNLEAFAILPGYPDNVR---TNEKGEFWVAIHCR 315 (406)
Q Consensus 282 ~~~~~~~~~~~l~g~pd~i~---~d~~G~lwv~~~~~ 315 (406)
.++..++||..|.+. ..+||..-++....
T Consensus 441 -----kKl~~DLpGh~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 441 -----KKLKQDLPGHADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred -----eeecccCCCCCceEEEEEecCCCceeecCCCc
Confidence 234557898888754 35888877766543
No 143
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.13 E-value=1.2 Score=43.35 Aligned_cols=84 Identities=25% Similarity=0.470 Sum_probs=49.5
Q ss_pred eEEEEeCCCCeEEEec-------ccCCCcceEEEec---CCCEEEEEeCCCCeEEEEEeeCCCCcc--eeeee--cCCCC
Q 015463 231 RVLKYDPTTKQTTVLL-------RNLQFPNGLSLSK---DKSFFVFCEGSVGRLHKYWLIGEKAGN--LEAFA--ILPGY 296 (406)
Q Consensus 231 ~l~~~d~~t~~~~~~~-------~~~~~~ngi~l~~---d~~~l~v~~t~~~~i~~~~~~g~~~~~--~~~~~--~l~g~ 296 (406)
++|++|+.++.++.+. ..+..+.|+|+.. +++...+.....+.+..|.+.....+. .+.+. .++..
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ 209 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQ 209 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCc
Confidence 4889999888776653 2334567999864 355444444445788888886332332 12222 35556
Q ss_pred CCceEEC-CCCCEEEEEcc
Q 015463 297 PDNVRTN-EKGEFWVAIHC 314 (406)
Q Consensus 297 pd~i~~d-~~G~lwv~~~~ 314 (406)
+.++++| ..|.||++--.
T Consensus 210 ~EGCVVDDe~g~LYvgEE~ 228 (381)
T PF02333_consen 210 PEGCVVDDETGRLYVGEED 228 (381)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred ceEEEEecccCCEEEecCc
Confidence 7888886 45789998743
No 144
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.09 E-value=0.016 Score=33.78 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=19.4
Q ss_pred cceEEEEeCCCCcEEEEeCCC-cEEE
Q 015463 132 RPLGLRFDKKTGDLYIADAYF-GLMK 156 (406)
Q Consensus 132 ~p~gi~~d~~~g~L~Vad~~~-gl~~ 156 (406)
.|.||++++ +|+|||+|..+ .|.+
T Consensus 3 ~P~gvav~~-~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 3 YPHGVAVDS-DGNIYVADSGNHRVQV 27 (28)
T ss_dssp SEEEEEEET-TSEEEEEECCCTEEEE
T ss_pred CCcEEEEeC-CCCEEEEECCCCEEEE
Confidence 599999997 99999999874 3443
No 145
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.08 E-value=0.24 Score=47.88 Aligned_cols=149 Identities=20% Similarity=0.161 Sum_probs=89.0
Q ss_pred cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463 71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (406)
Q Consensus 71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~ 150 (406)
-.+.++.|||.++-+|+.+|.+..||.......+..+. ..+....|.|.. +|...+..+
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg--------------------ht~~vk~i~FsE-NGY~Lat~a 408 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG--------------------HTGPVKAISFSE-NGYWLATAA 408 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC--------------------CCCceeEEEecc-CceEEEEEe
Confidence 45778889998666789999888888762223322221 124456789986 665444444
Q ss_pred CCc-EEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463 151 YFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT 229 (406)
Q Consensus 151 ~~g-l~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 229 (406)
..+ +..+|...- +.+.+- .-.....++++.+|..|.......+ +
T Consensus 409 dd~~V~lwDLRKl--~n~kt~-~l~~~~~v~s~~fD~SGt~L~~~g~--------------------------------~ 453 (506)
T KOG0289|consen 409 DDGSVKLWDLRKL--KNFKTI-QLDEKKEVNSLSFDQSGTYLGIAGS--------------------------------D 453 (506)
T ss_pred cCCeEEEEEehhh--ccccee-eccccccceeEEEcCCCCeEEeecc--------------------------------e
Confidence 455 889997532 222111 1111235789999999976555432 1
Q ss_pred CeEEEEeCCCCeEEEec---ccCCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 015463 230 GRVLKYDPTTKQTTVLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY 277 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~~---~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~ 277 (406)
=.+|.++..+++++... ......+|+.+..+- .|++.++..++.++
T Consensus 454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a--q~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA--QYLASTSMDAILRL 502 (506)
T ss_pred eEEEEEecccccceeeehhhhcccccceeeecccc--eEEeeccchhheEE
Confidence 35888888887766543 222356788776544 34455555666543
No 146
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.03 E-value=0.025 Score=36.13 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=33.1
Q ss_pred ecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463 245 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 282 (406)
Q Consensus 245 ~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~ 282 (406)
+..++..|+|+++++.++.+|+++.....|.+++++|.
T Consensus 4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 34567889999999999999999999999999998753
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.03 E-value=2.2 Score=43.76 Aligned_cols=154 Identities=18% Similarity=0.080 Sum_probs=89.4
Q ss_pred CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad 149 (406)
.-|++++.+.|+ ||....+|.|..||........ ..+..++..+.|+..+.+..+-|+.
T Consensus 71 sIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~--------------------~~d~~gg~IWsiai~p~~~~l~Igc 129 (691)
T KOG2048|consen 71 SIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKY--------------------NIDSNGGAIWSIAINPENTILAIGC 129 (691)
T ss_pred ceeeEEEccCCe-EEeecCCceEEEEecccCceeE--------------------EecCCCcceeEEEeCCccceEEeec
Confidence 348999986666 9999999999999986322221 1223356678899988666677874
Q ss_pred CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463 150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT 229 (406)
Q Consensus 150 ~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 229 (406)
..+-++.++...++++.-... +.+-..+-++..+++|.=.++.+ .+
T Consensus 130 ddGvl~~~s~~p~~I~~~r~l--~rq~sRvLslsw~~~~~~i~~Gs--------------------------------~D 175 (691)
T KOG2048|consen 130 DDGVLYDFSIGPDKITYKRSL--MRQKSRVLSLSWNPTGTKIAGGS--------------------------------ID 175 (691)
T ss_pred CCceEEEEecCCceEEEEeec--ccccceEEEEEecCCccEEEecc--------------------------------cC
Confidence 433355555555554432111 11223455778888886333322 24
Q ss_pred CeEEEEeCCCCeEEEe----cccCCC-----cceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 230 GRVLKYDPTTKQTTVL----LRNLQF-----PNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~----~~~~~~-----~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
|.+..+|..+++.-.+ .+++.. ..++.+-.|+ .+++....+.|.-++.+
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSI 233 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEccc
Confidence 7788888887765442 122222 2344444555 34555556667666643
No 148
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.96 E-value=0.36 Score=50.34 Aligned_cols=184 Identities=15% Similarity=0.146 Sum_probs=105.1
Q ss_pred CcceEEEcCCCCeeEEEecCCEEEEEeCC-cee--EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463 70 GPESMAFDPLGRGPYTGVADGRILFWDGL-KWT--DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~ 146 (406)
..-+++++.=||-.++|+..|.|-+++.. +.. .|.... ...+...|++.|. -+++.
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~--------------------ah~~~V~gla~D~-~n~~~ 508 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP--------------------AHKGEVTGLAVDG-TNRLL 508 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc--------------------cccCceeEEEecC-CCceE
Confidence 44677888889988999999999999987 332 231110 1134457999997 77888
Q ss_pred EEeCCCcEEEE-eCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463 147 IADAYFGLMKV-GPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI 225 (406)
Q Consensus 147 Vad~~~gl~~~-d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 225 (406)
|+....|+..+ |.+++....-... +. .+.. .+|.-.+. +..+
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~l~l--~~---~~~~-------iv~hr~s~--------------l~a~----------- 551 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKSLRL--GS---SITG-------IVYHRVSD--------------LLAI----------- 551 (910)
T ss_pred EEccCcceEEEEecCCcceeeeecc--CC---Ccce-------eeeeehhh--------------hhhh-----------
Confidence 88777786654 5443321110000 10 1112 22222211 1110
Q ss_pred cCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECC
Q 015463 226 TKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE 304 (406)
Q Consensus 226 ~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~ 304 (406)
...+=.+..||..|.++..-..+ -..-+.+++|+||+.+..+.. .+.|..|++-.. .-...+. .+.-+-++.+++
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm-D~tIr~wDlpt~--~lID~~~-vd~~~~sls~SP 627 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM-DSTIRTWDLPTG--TLIDGLL-VDSPCTSLSFSP 627 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec-CCcEEEEeccCc--ceeeeEe-cCCcceeeEECC
Confidence 01122488889877654332222 234578999999998876654 467888887421 1111121 122245778889
Q ss_pred CCCEEEEEccC
Q 015463 305 KGEFWVAIHCR 315 (406)
Q Consensus 305 ~G~lwv~~~~~ 315 (406)
+|.+.++.+.+
T Consensus 628 ngD~LAT~Hvd 638 (910)
T KOG1539|consen 628 NGDFLATVHVD 638 (910)
T ss_pred CCCEEEEEEec
Confidence 99988887654
No 149
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=95.91 E-value=1.2 Score=43.04 Aligned_cols=185 Identities=20% Similarity=0.153 Sum_probs=98.0
Q ss_pred cCcceE-EEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC-C-cE
Q 015463 69 QGPESM-AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT-G-DL 145 (406)
Q Consensus 69 ~gpe~i-~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~-g-~L 145 (406)
..|-+. .+..+++.+.||+.+|.+..|+........... .+ ..+.-++.|.|.. + +|
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~-------------------gH-~~~v~~~~fhP~~~~~~l 234 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR-------------------GH-TSRVGAAVFHPVDSDLNL 234 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEe-------------------cc-ccceeeEEEccCCCccce
Confidence 456444 456788889999999988888765211111110 01 2345567888741 2 45
Q ss_pred EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463 146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI 225 (406)
Q Consensus 146 ~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 225 (406)
.-|..++.+..++.++. +.+.. ..+- ...+..+++.|+|.+..|.+.. .
T Consensus 235 at~s~Dgtvklw~~~~e--~~l~~-l~gH-~~RVs~VafHPsG~~L~TasfD-~-------------------------- 283 (459)
T KOG0272|consen 235 ATASADGTVKLWKLSQE--TPLQD-LEGH-LARVSRVAFHPSGKFLGTASFD-S-------------------------- 283 (459)
T ss_pred eeeccCCceeeeccCCC--cchhh-hhcc-hhhheeeeecCCCceeeecccc-c--------------------------
Confidence 55555554555554442 22221 1221 2457789999999988886531 1
Q ss_pred cCCCCeEEEEeCCCCeEEEecccCC-CcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCC---CceE
Q 015463 226 TKDTGRVLKYDPTTKQTTVLLRNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP---DNVR 301 (406)
Q Consensus 226 ~~~~g~l~~~d~~t~~~~~~~~~~~-~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~p---d~i~ 301 (406)
+-+| ||..|++.-.+.++.. ...++++.+||. |..+ .+...+-|+|- -++++...|.+ |.. -++.
T Consensus 284 ---tWRl--WD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~t-GGlD~~~RvWD--lRtgr~im~L~--gH~k~I~~V~ 352 (459)
T KOG0272|consen 284 ---TWRL--WDLETKSELLLQEGHSKGVFSIAFQPDGS-LAAT-GGLDSLGRVWD--LRTGRCIMFLA--GHIKEILSVA 352 (459)
T ss_pred ---chhh--cccccchhhHhhcccccccceeEecCCCc-eeec-cCccchhheee--cccCcEEEEec--ccccceeeEe
Confidence 1233 3555544333334432 345788999996 3333 22334444441 13455555532 322 3567
Q ss_pred ECCCCCEEEEEccC
Q 015463 302 TNEKGEFWVAIHCR 315 (406)
Q Consensus 302 ~d~~G~lwv~~~~~ 315 (406)
++++|-..++....
T Consensus 353 fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 353 FSPNGYHLATGSSD 366 (459)
T ss_pred ECCCceEEeecCCC
Confidence 88888544444333
No 150
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=95.90 E-value=0.82 Score=44.17 Aligned_cols=186 Identities=18% Similarity=0.202 Sum_probs=103.4
Q ss_pred cCcccCcceEEEcCC--CCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463 65 LNQIQGPESMAFDPL--GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT 142 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~--g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~ 142 (406)
.+.....-++.+.|. +.-+-++..||.+..|+.+.-+.+. ..+....|.--++|.| +
T Consensus 214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~--------------------~l~gH~~RVs~VafHP-s 272 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ--------------------DLEGHLARVSRVAFHP-S 272 (459)
T ss_pred eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh--------------------hhhcchhhheeeeecC-C
Confidence 344334445555553 3348889999988777654212221 1222235566789999 7
Q ss_pred CcEEEEeCCC-cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463 143 GDLYIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221 (406)
Q Consensus 143 g~L~Vad~~~-gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 221 (406)
|......++. .=..+|..++. +.+.. .|- ...+.++++.+||.+-.|..-
T Consensus 273 G~~L~TasfD~tWRlWD~~tk~-ElL~Q--EGH-s~~v~~iaf~~DGSL~~tGGl------------------------- 323 (459)
T KOG0272|consen 273 GKFLGTASFDSTWRLWDLETKS-ELLLQ--EGH-SKGVFSIAFQPDGSLAATGGL------------------------- 323 (459)
T ss_pred Cceeeecccccchhhcccccch-hhHhh--ccc-ccccceeEecCCCceeeccCc-------------------------
Confidence 8766665553 33345666553 22221 121 235778999999999877531
Q ss_pred CCcccCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC---C
Q 015463 222 PIKITKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY---P 297 (406)
Q Consensus 222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~---p 297 (406)
...|+| +|..+|+...++.+ .....+|+++|+| +.+.+....+.+.++++... .+.+ .+|+. -
T Consensus 324 -----D~~~Rv--WDlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r----~~ly-~ipAH~nlV 390 (459)
T KOG0272|consen 324 -----DSLGRV--WDLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMR----SELY-TIPAHSNLV 390 (459)
T ss_pred -----cchhhe--eecccCcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccc----ccce-ecccccchh
Confidence 112555 46667766555544 3344689999988 45455555555555565432 1121 23332 3
Q ss_pred CceEECCC-CCEEEEEc
Q 015463 298 DNVRTNEK-GEFWVAIH 313 (406)
Q Consensus 298 d~i~~d~~-G~lwv~~~ 313 (406)
..+.++++ |.+.++..
T Consensus 391 S~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTAS 407 (459)
T ss_pred hheEecccCCeEEEEcc
Confidence 45677774 54555443
No 151
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.87 E-value=0.34 Score=51.75 Aligned_cols=197 Identities=17% Similarity=0.180 Sum_probs=100.8
Q ss_pred eEEEcCCCCeeEEEe--cCCEEEEEeCCcee-EEEeecCC-CccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463 73 SMAFDPLGRGPYTGV--ADGRILFWDGLKWT-DFAFTSNN-RSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (406)
Q Consensus 73 ~i~~d~~g~~ly~g~--~~g~I~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va 148 (406)
+|.+.++|..+-+|. .||++..|+.+.+- +....... ....|. +....+....++|.++...|++|
T Consensus 18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~----------m~~h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCT----------MDDHDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhhee----------eccccCceeEEEECCCCCeEeec
Confidence 566778887555666 56777777655111 11001110 011232 22224556678899844456666
Q ss_pred eCCCcEEEEeCCC-CeEEEccc--------------ccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccc
Q 015463 149 DAYFGLMKVGPEG-GLATSLAT--------------EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQL 213 (406)
Q Consensus 149 d~~~gl~~~d~~~-~~~~~l~~--------------~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~ 213 (406)
..++-+.++.... +.-..+.. ...+ .-..+.+++.++++.+.++-+-
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~----------------- 149 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSL----------------- 149 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecc-----------------
Confidence 5544444444431 00000000 0001 1234667888888887777542
Q ss_pred cccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC---CCcceee
Q 015463 214 CSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE---KAGNLEA 289 (406)
Q Consensus 214 ~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~---~~~~~~~ 289 (406)
++.+..||..+.+..... ......-|++++|-|+++ .+.+ ..|..++|.... ...-.+.
T Consensus 150 ---------------DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~-ASqs-dDrtikvwrt~dw~i~k~It~p 212 (942)
T KOG0973|consen 150 ---------------DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYF-ASQS-DDRTLKVWRTSDWGIEKSITKP 212 (942)
T ss_pred ---------------cceEEEEccccceeeeeeecccccccceEECCccCee-eeec-CCceEEEEEcccceeeEeeccc
Confidence 467999998876543333 334567899999999854 3444 445444443211 0111223
Q ss_pred eecCCCCCC--ceEECCCCCEEEEEcc
Q 015463 290 FAILPGYPD--NVRTNEKGEFWVAIHC 314 (406)
Q Consensus 290 ~~~l~g~pd--~i~~d~~G~lwv~~~~ 314 (406)
|.+.++.+- -+..++||.+.++.++
T Consensus 213 f~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 213 FEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred hhhCCCcceeeecccCCCcCeecchhh
Confidence 333333222 2334788888877654
No 152
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=95.85 E-value=1.3 Score=40.18 Aligned_cols=128 Identities=12% Similarity=0.110 Sum_probs=76.8
Q ss_pred eEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEEeC
Q 015463 83 PYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP 159 (406)
Q Consensus 83 ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~ 159 (406)
+..++.++.|..||-. .++.+.. ...+..+-+.. +|++.....+.+|..+|+
T Consensus 158 iLSSadd~tVRLWD~rTgt~v~sL~~------------------------~s~VtSlEvs~-dG~ilTia~gssV~Fwda 212 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRTGTEVQSLEF------------------------NSPVTSLEVSQ-DGRILTIAYGSSVKFWDA 212 (334)
T ss_pred EEeeccCCceEEEEeccCcEEEEEec------------------------CCCCcceeecc-CCCEEEEecCceeEEecc
Confidence 5666778888888865 2222211 12245677776 788776666678888888
Q ss_pred CCCe-EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCC
Q 015463 160 EGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT 238 (406)
Q Consensus 160 ~~~~-~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~ 238 (406)
++=. ++.+... ..+++-...|+-.+|++- ..+..+++||-.
T Consensus 213 ksf~~lKs~k~P------~nV~SASL~P~k~~fVaG--------------------------------ged~~~~kfDy~ 254 (334)
T KOG0278|consen 213 KSFGLLKSYKMP------CNVESASLHPKKEFFVAG--------------------------------GEDFKVYKFDYN 254 (334)
T ss_pred ccccceeeccCc------cccccccccCCCceEEec--------------------------------CcceEEEEEecc
Confidence 6422 1211110 123333455666788874 234679999999
Q ss_pred CCeEEEe-cccCCCc-ceEEEecCCCEEEEEeCCCCeE
Q 015463 239 TKQTTVL-LRNLQFP-NGLSLSKDKSFFVFCEGSVGRL 274 (406)
Q Consensus 239 t~~~~~~-~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i 274 (406)
|++-... ..+...| ..+.++|||. +|.+.+..+.|
T Consensus 255 TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTi 291 (334)
T KOG0278|consen 255 TGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTI 291 (334)
T ss_pred CCceeeecccCCCCceEEEEECCCCc-eeeccCCCceE
Confidence 8865444 3444444 6889999997 66665544433
No 153
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.80 E-value=1.4 Score=42.99 Aligned_cols=70 Identities=17% Similarity=0.338 Sum_probs=45.3
Q ss_pred EeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463 138 FDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL 217 (406)
Q Consensus 138 ~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~ 217 (406)
.+. +|++|++...+.|+.+|+++++.. ......+ .....+.-.+..+|+||+++..
T Consensus 65 ~~~-dg~v~~~~~~G~i~A~d~~~g~~~-W~~~~~~-~~~~~~~~~~~~~G~i~~g~~~--------------------- 120 (370)
T COG1520 65 ADG-DGTVYVGTRDGNIFALNPDTGLVK-WSYPLLG-AVAQLSGPILGSDGKIYVGSWD--------------------- 120 (370)
T ss_pred Eee-CCeEEEecCCCcEEEEeCCCCcEE-ecccCcC-cceeccCceEEeCCeEEEeccc---------------------
Confidence 344 789999966667999999998742 1111111 0122333344449999999854
Q ss_pred CCCCCCcccCCCCeEEEEeCCCCeEE
Q 015463 218 NDPSPIKITKDTGRVLKYDPTTKQTT 243 (406)
Q Consensus 218 ~~~~~~~~~~~~g~l~~~d~~t~~~~ 243 (406)
|.++++|..+|+..
T Consensus 121 ------------g~~y~ld~~~G~~~ 134 (370)
T COG1520 121 ------------GKLYALDASTGTLV 134 (370)
T ss_pred ------------ceEEEEECCCCcEE
Confidence 57999999777654
No 154
>PRK13684 Ycf48-like protein; Provisional
Probab=95.69 E-value=2.2 Score=41.19 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=33.0
Q ss_pred cceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEe
Q 015463 132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTD 194 (406)
Q Consensus 132 ~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~ 194 (406)
.+..+.... ++.+|++....+|++-+-.+...+.+.... ...++++..+++|.+++..
T Consensus 133 ~~~~i~~~~-~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~----~g~~~~i~~~~~g~~v~~g 190 (334)
T PRK13684 133 SPYLITALG-PGTAEMATNVGAIYRTTDGGKNWEALVEDA----AGVVRNLRRSPDGKYVAVS 190 (334)
T ss_pred CceEEEEEC-CCcceeeeccceEEEECCCCCCceeCcCCC----cceEEEEEECCCCeEEEEe
Confidence 455555444 566777766556766654444444443322 2346778888887666554
No 155
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.62 E-value=0.54 Score=46.17 Aligned_cols=107 Identities=12% Similarity=0.180 Sum_probs=67.1
Q ss_pred cCCcceEEEEeCCCCc-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccc
Q 015463 129 ICGRPLGLRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKE 207 (406)
Q Consensus 129 ~~~~p~gi~~d~~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~ 207 (406)
..++...+..++ +|. +.++.....|+.+|.++|.++.+..... ..+.+++.+++++. ++=+ ++. .|
T Consensus 400 ~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~----~lItdf~~~~nsr~-iAYa---fP~-gy--- 466 (668)
T COG4946 400 DLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEY----GLITDFDWHPNSRW-IAYA---FPE-GY--- 466 (668)
T ss_pred CccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEeccccc----ceeEEEEEcCCcee-EEEe---cCc-ce---
Confidence 356677888888 666 6777666789999999998876543322 34667888887753 3321 110 01
Q ss_pred cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEe
Q 015463 208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCE 268 (406)
Q Consensus 208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~ 268 (406)
-+..+-.||..+++.-.+...-...-.-|+++|++.||+-.
T Consensus 467 --------------------~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 467 --------------------YTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred --------------------eeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 11246667777665544433333334567889999998865
No 156
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=95.61 E-value=0.85 Score=48.18 Aligned_cols=137 Identities=14% Similarity=0.122 Sum_probs=80.2
Q ss_pred EEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccc
Q 015463 135 GLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQL 213 (406)
Q Consensus 135 gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~ 213 (406)
.++++. +|++.++.+. .+|-.++......+......++ -+-+|..+++|++....+.
T Consensus 101 ~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a----pVl~l~~~p~~~fLAvss~----------------- 158 (933)
T KOG1274|consen 101 DLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA----PVLQLSYDPKGNFLAVSSC----------------- 158 (933)
T ss_pred EEEEec-CCcEEEeecCceeEEEEeccccchheeecccCC----ceeeeeEcCCCCEEEEEec-----------------
Confidence 467877 6766655444 5666666544332222222222 2457889999988877543
Q ss_pred cccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCc---------ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCC
Q 015463 214 CSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP---------NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA 284 (406)
Q Consensus 214 ~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~---------ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~ 284 (406)
+|.|..||.+++.....+.++... +-++++|++..+.+.-. .+.|..|+.++-
T Consensus 159 ---------------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy~r~~w-- 220 (933)
T KOG1274|consen 159 ---------------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-DNTVKVYSRKGW-- 220 (933)
T ss_pred ---------------CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc-CCeEEEEccCCc--
Confidence 588999999988765544443222 34679999666666544 578999987642
Q ss_pred cceeeee---cC-CCCCCceEECCCCCEEEEEc
Q 015463 285 GNLEAFA---IL-PGYPDNVRTNEKGEFWVAIH 313 (406)
Q Consensus 285 ~~~~~~~---~l-~g~pd~i~~d~~G~lwv~~~ 313 (406)
...|. +. ..--..+..++.|.+.++..
T Consensus 221 --e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 221 --ELQFKLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred --eeheeecccccccceEEEEEcCCCcEEeeec
Confidence 22222 00 00012345677876655544
No 157
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.55 E-value=0.81 Score=44.15 Aligned_cols=157 Identities=14% Similarity=0.091 Sum_probs=92.3
Q ss_pred cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK 141 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~ 141 (406)
++...+..-|.++||.+.+.+...+.-+..||.+ ....+... .+..+...+..++
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~----------------------~~~S~~sc~W~pD 323 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG----------------------LGFSVSSCAWCPD 323 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC----------------------cCCCcceeEEccC
Confidence 4455556777888888856655555556667655 11112110 1233455667773
Q ss_pred CCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463 142 TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221 (406)
Q Consensus 142 ~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 221 (406)
.-.+.++...++++.+|.++....... +.....+.++++..||.-.++...
T Consensus 324 g~~~V~Gs~dr~i~~wdlDgn~~~~W~----gvr~~~v~dlait~Dgk~vl~v~~------------------------- 374 (519)
T KOG0293|consen 324 GFRFVTGSPDRTIIMWDLDGNILGNWE----GVRDPKVHDLAITYDGKYVLLVTV------------------------- 374 (519)
T ss_pred CceeEecCCCCcEEEecCCcchhhccc----ccccceeEEEEEcCCCcEEEEEec-------------------------
Confidence 334555555678999999877543332 222345789999999954433211
Q ss_pred CCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+..+..|+.++..-+-+...-..-..+++|.|++..++.- ..+.+..++++
T Consensus 375 -------d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL-~~qei~LWDl~ 425 (519)
T KOG0293|consen 375 -------DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL-QDQEIHLWDLE 425 (519)
T ss_pred -------ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc-ccCeeEEeecc
Confidence 1346666666543322333333445688999999877764 45778888776
No 158
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=95.30 E-value=1.1 Score=41.93 Aligned_cols=164 Identities=14% Similarity=0.161 Sum_probs=85.0
Q ss_pred cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--cee-EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK 141 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~ 141 (406)
-++-.-+|+-.++|||+.+.+|+-||-|-.|+-. +++ .+.....+ ..-......+.|.|+.
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd---------------~fMMmd~aVlci~FSR- 273 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD---------------NFMMMDDAVLCISFSR- 273 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc---------------ceeecccceEEEeecc-
Confidence 3455679999999999988899999988888643 111 11100000 0001123356778887
Q ss_pred CCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463 142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP 220 (406)
Q Consensus 142 ~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~ 220 (406)
+.++....+. +.|-.+...+|.... .++..--..+.++.+.+|+.-..+.+.
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~SqiLS~sf------------------------ 326 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDNSQILSASF------------------------ 326 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCcchhhcccc------------------------
Confidence 4444433333 334444444554211 111111234667777777644343321
Q ss_pred CCCcccCCCCeEEEEeCCCCeE-EEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 221 SPIKITKDTGRVLKYDPTTKQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 221 ~~~~~~~~~g~l~~~d~~t~~~-~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+-.+..--.++|+. +.+...-.+.|-..+++||..++-+ +..+.|..++.+
T Consensus 327 --------D~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa-SsDgtvkvW~~K 378 (508)
T KOG0275|consen 327 --------DQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA-SSDGTVKVWHGK 378 (508)
T ss_pred --------cceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe-cCCccEEEecCc
Confidence 01111111222322 2222333566778899999877554 445677777655
No 159
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.25 E-value=4.3 Score=41.80 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=65.7
Q ss_pred CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCC-cceEEEEeCCCCcEEEEeCCCcEEE
Q 015463 79 LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICG-RPLGLRFDKKTGDLYIADAYFGLMK 156 (406)
Q Consensus 79 ~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~gi~~d~~~g~L~Vad~~~gl~~ 156 (406)
+| .+|+++.++.|+.+|.. .............. . .....|. ...++++. ++.+|+++....|+.
T Consensus 69 ~g-~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~-~----------~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~A 134 (527)
T TIGR03075 69 DG-VMYVTTSYSRVYALDAKTGKELWKYDPKLPDD-V----------IPVMCCDVVNRGVALY--DGKVFFGTLDARLVA 134 (527)
T ss_pred CC-EEEEECCCCcEEEEECCCCceeeEecCCCCcc-c----------ccccccccccccceEE--CCEEEEEcCCCEEEE
Confidence 44 49999989999999976 22222211100000 0 0000010 01234555 578999988888999
Q ss_pred EeCCCCeEEEcccccCCc-ccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEE
Q 015463 157 VGPEGGLATSLATEAEGV-PLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKY 235 (406)
Q Consensus 157 ~d~~~~~~~~l~~~~~~~-~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~ 235 (406)
+|.++|+..=-....+-. .......-++. +|.+|++.++..+ ...|.|+.|
T Consensus 135 LDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~---------------------------~~~G~v~Al 186 (527)
T TIGR03075 135 LDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEF---------------------------GVRGYVTAY 186 (527)
T ss_pred EECCCCCEEeecccccccccccccCCcEEE-CCEEEEeeccccc---------------------------CCCcEEEEE
Confidence 999988753111110000 00011112222 6789988653111 124789999
Q ss_pred eCCCCeEEE
Q 015463 236 DPTTKQTTV 244 (406)
Q Consensus 236 d~~t~~~~~ 244 (406)
|.+||+..-
T Consensus 187 D~~TG~~lW 195 (527)
T TIGR03075 187 DAKTGKLVW 195 (527)
T ss_pred ECCCCceeE
Confidence 999997643
No 160
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.23 E-value=0.18 Score=47.72 Aligned_cols=185 Identities=12% Similarity=0.087 Sum_probs=91.6
Q ss_pred cccCcceEEEcCCC-CeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463 67 QIQGPESMAFDPLG-RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (406)
Q Consensus 67 ~~~gpe~i~~d~~g-~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L 145 (406)
.-.|..++|-.+.- ..+.+|+.||.|..||..+...+.. .+...|-..||+++. +..+
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~--------------------f~AH~G~V~Gi~v~~-~~~~ 123 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT--------------------FKAHEGLVRGICVTQ-TSFF 123 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe--------------------eecccCceeeEEecc-cceE
Confidence 33456777777654 3478999999999999762111111 111135567999986 5667
Q ss_pred EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeC--------CCchhhhccccccccccccccC
Q 015463 146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS--------STNYQRRQMQKENIPLQLCSSL 217 (406)
Q Consensus 146 ~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~--------~~~~~~~~~~~~~~~~~~~~e~ 217 (406)
.+++. +.+-++-.++..+..+.... ...+|.-...++++.|.. ....+.+++.+.-+.+..+--.
T Consensus 124 tvgdD-KtvK~wk~~~~p~~tilg~s------~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 124 TVGDD-KTVKQWKIDGPPLHTILGKS------VYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred EecCC-cceeeeeccCCcceeeeccc------cccccccccccccccccCceeeecccccCCccceeecCCCceeEEecC
Confidence 77764 44444433332223222110 011122211222222211 1111111111100000000000
Q ss_pred CCCCCCcc-cCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 218 NDPSPIKI-TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 218 ~~~~~~~~-~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
...+.|.. ...++.++.||..+++...-...-..+|+|++.| +.+.+++......++.|+..
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhh
Confidence 01111221 2246779999988765432222234679999999 77888888778899999865
No 161
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.11 E-value=0.45 Score=49.68 Aligned_cols=150 Identities=19% Similarity=0.111 Sum_probs=91.7
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCC
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY 151 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~ 151 (406)
-++++|.-++.+.+++.+|-+..|+-++........ ....+.++......+-+.++...
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~---------------------l~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR---------------------LGSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCCcceeeeec---------------------cCCCcceeeeeehhhhhhhhcCc
Confidence 578898888878888888877777765222111110 01123345544423444444445
Q ss_pred CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCe
Q 015463 152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGR 231 (406)
Q Consensus 152 ~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~ 231 (406)
..|..+|..+.++.. .+.|- .+.++++++.+||+-.++.+. ++.
T Consensus 556 f~I~vvD~~t~kvvR---~f~gh-~nritd~~FS~DgrWlisasm--------------------------------D~t 599 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVR---EFWGH-GNRITDMTFSPDGRWLISASM--------------------------------DST 599 (910)
T ss_pred eeEEEEEchhhhhhH---Hhhcc-ccceeeeEeCCCCcEEEEeec--------------------------------CCc
Confidence 688999987654322 22221 246899999999986666542 366
Q ss_pred EEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 015463 232 VLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 278 (406)
Q Consensus 232 l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~ 278 (406)
+..||.-|+...-...--.-+..+.++|.+++|-.+..+...|+.+.
T Consensus 600 Ir~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 600 IRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 88888877754221111122346889999999888877767777654
No 162
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.10 E-value=1.3 Score=41.02 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=16.8
Q ss_pred cccccceEEcCCCCEEEEeC
Q 015463 176 LRFTNDLDIDDEGNVYFTDS 195 (406)
Q Consensus 176 ~~~~~~l~~d~dG~ly~t~~ 195 (406)
...+..++.++||++|++..
T Consensus 225 ~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred hcceeeeeeCCCCcEEEEEE
Confidence 34678899999999999974
No 163
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.07 E-value=6.3 Score=42.78 Aligned_cols=185 Identities=11% Similarity=0.086 Sum_probs=98.0
Q ss_pred ceEEEcC-CCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE-Ee
Q 015463 72 ESMAFDP-LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI-AD 149 (406)
Q Consensus 72 e~i~~d~-~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V-ad 149 (406)
.++++.+ .++.+.++..+|.|..|+....+.+.... ...+...++++++.++++++ +.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~--------------------~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK--------------------EHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec--------------------CCCCCEEEEEEcCCCCCEEEEEc
Confidence 5667765 35668888999999999876222221111 11244678889863566554 44
Q ss_pred CCCcEEEEeCCCCeEEEcccccCCcccccccceEE-cCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463 150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI-DDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD 228 (406)
Q Consensus 150 ~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~-d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 228 (406)
..+.|..+|..++........ ...+..+.+ .++|.+.++.+.
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~-----~~~v~~v~~~~~~g~~latgs~-------------------------------- 638 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKT-----KANICCVQFPSESGRSLAFGSA-------------------------------- 638 (793)
T ss_pred CCCEEEEEECCCCcEEEEEec-----CCCeEEEEEeCCCCCEEEEEeC--------------------------------
Confidence 445688888876543211111 112445555 346766665432
Q ss_pred CCeEEEEeCCCCeE--EEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCc-ceeeeecCCCC---CCceEE
Q 015463 229 TGRVLKYDPTTKQT--TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAG-NLEAFAILPGY---PDNVRT 302 (406)
Q Consensus 229 ~g~l~~~d~~t~~~--~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~-~~~~~~~l~g~---pd~i~~ 302 (406)
+|.+..||..+.+. ..+.........+++. ++..++ +....+.|..+++.....+ ....+..+.|. ...+.+
T Consensus 639 dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv-s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~ 716 (793)
T PLN00181 639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV-SSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL 716 (793)
T ss_pred CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE-EEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence 47799999875532 2222111223456675 566554 4444567777776421111 01111122222 334667
Q ss_pred CCCCCEEEEEccC
Q 015463 303 NEKGEFWVAIHCR 315 (406)
Q Consensus 303 d~~G~lwv~~~~~ 315 (406)
+++|.+.++....
T Consensus 717 s~~~~~lasgs~D 729 (793)
T PLN00181 717 SVSDGYIATGSET 729 (793)
T ss_pred cCCCCEEEEEeCC
Confidence 8888766655443
No 164
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.96 E-value=5.2 Score=41.21 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.9
Q ss_pred eeEEEecCCEEEEEeCC
Q 015463 82 GPYTGVADGRILFWDGL 98 (406)
Q Consensus 82 ~ly~g~~~g~I~~~~~~ 98 (406)
.+|+++.+++|+.+|..
T Consensus 122 ~v~v~t~dg~l~ALDa~ 138 (527)
T TIGR03075 122 KVFFGTLDARLVALDAK 138 (527)
T ss_pred EEEEEcCCCEEEEEECC
Confidence 38999999999999976
No 165
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=94.95 E-value=0.97 Score=39.88 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=71.3
Q ss_pred cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeE
Q 015463 153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRV 232 (406)
Q Consensus 153 gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l 232 (406)
.|++++..+.....+.....+ .+.+++..|+|+-++.-.+ .....+
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~----~I~~~~WsP~g~~favi~g------------------------------~~~~~v 85 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEG----PIHDVAWSPNGNEFAVIYG------------------------------SMPAKV 85 (194)
T ss_pred EEEEEecCCCccceeeccCCC----ceEEEEECcCCCEEEEEEc------------------------------cCCccc
Confidence 578887665544443222111 2778999999965433211 112357
Q ss_pred EEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCcceeeeec-CCCCCCceEECCCCCEE
Q 015463 233 LKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFW 309 (406)
Q Consensus 233 ~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~-l~g~pd~i~~d~~G~lw 309 (406)
..||.+...+..+. -...|.|.++|+|+++.++... .+.|..++... .+.+.. -......++.+++|++.
T Consensus 86 ~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 86 TLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYL 158 (194)
T ss_pred EEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-----CEEeeccccCcEEEEEEcCCCCEE
Confidence 77887644444433 2356789999999999887643 34577777651 222221 11224567789999987
Q ss_pred EEEc
Q 015463 310 VAIH 313 (406)
Q Consensus 310 v~~~ 313 (406)
++..
T Consensus 159 ~ta~ 162 (194)
T PF08662_consen 159 ATAT 162 (194)
T ss_pred EEEE
Confidence 7654
No 166
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.83 E-value=5.1 Score=40.52 Aligned_cols=170 Identities=21% Similarity=0.221 Sum_probs=90.9
Q ss_pred ceEEEcCCCCeeE-EEecCCEEEEEeCC------------ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEE--
Q 015463 72 ESMAFDPLGRGPY-TGVADGRILFWDGL------------KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL-- 136 (406)
Q Consensus 72 e~i~~d~~g~~ly-~g~~~g~I~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi-- 136 (406)
-.|-+.+||..++ +|++.-+|..++.. ..+.|...+.+++..|-. ....+++.....|+-+++
T Consensus 55 t~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L--~~DR~IefHak~G~hy~~RI 132 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFL--QNDRTIEFHAKYGRHYRTRI 132 (703)
T ss_pred ceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEe--ecCceeeehhhcCeeeeeec
Confidence 4677889999555 47777778777643 223343344444432210 001111222223333333
Q ss_pred -------EEeCCCCcEEEEeCCCcEEEEeCCCCeEEE-cccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463 137 -------RFDKKTGDLYIADAYFGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 137 -------~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~-l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~ 208 (406)
+.+.-.-.||++.++.-|||++.+.|.+.. +... ...+|.+.+.+...|..+
T Consensus 133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~-----~~~lN~v~in~~hgLla~--------------- 192 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETD-----SGELNVVSINEEHGLLAC--------------- 192 (703)
T ss_pred CcCCccccccCCCccEEEeecCcceEEEEccccccccccccc-----cccceeeeecCccceEEe---------------
Confidence 333223458888888889999998775422 2111 112444455443333322
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec------------ccCCCcceEEEecCCCEEEEEeCCCCeEEE
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL------------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHK 276 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~------------~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~ 276 (406)
+..+|.+-.+||.+++....+ +....+..+.++.||= -+-+.|..+.++.
T Consensus 193 -----------------Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~i 254 (703)
T KOG2321|consen 193 -----------------GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLI 254 (703)
T ss_pred -----------------cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEE
Confidence 333577888888876432211 1112244566766653 4455677899999
Q ss_pred EEeeC
Q 015463 277 YWLIG 281 (406)
Q Consensus 277 ~~~~g 281 (406)
|++..
T Consensus 255 yDLRa 259 (703)
T KOG2321|consen 255 YDLRA 259 (703)
T ss_pred EEccc
Confidence 99863
No 167
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.66 E-value=4.1 Score=38.60 Aligned_cols=183 Identities=15% Similarity=0.215 Sum_probs=79.0
Q ss_pred CcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463 70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI 147 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V 147 (406)
...+|++..+.+.+.+|. .|.|++=... .|+........ ...-+-..|.+. +++.||
T Consensus 18 ~l~dV~F~d~~~G~~VG~-~g~il~T~DGG~tW~~~~~~~~~------------------~~~~~l~~I~f~--~~~g~i 76 (302)
T PF14870_consen 18 PLLDVAFVDPNHGWAVGA-YGTILKTTDGGKTWQPVSLDLDN------------------PFDYHLNSISFD--GNEGWI 76 (302)
T ss_dssp -EEEEEESSSS-EEEEET-TTEEEEESSTTSS-EE-----S-----------------------EEEEEEEE--TTEEEE
T ss_pred ceEEEEEecCCEEEEEec-CCEEEEECCCCccccccccCCCc------------------cceeeEEEEEec--CCceEE
Confidence 345677765556455554 5667766443 56655321100 001123467776 356777
Q ss_pred EeCCCcEEEEeCCCCe-EEEcc--cccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463 148 ADAYFGLMKVGPEGGL-ATSLA--TEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK 224 (406)
Q Consensus 148 ad~~~gl~~~d~~~~~-~~~l~--~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 224 (406)
+.. .|++....++|+ .+.+. ...++. +..+....++.+++...
T Consensus 77 vG~-~g~ll~T~DgG~tW~~v~l~~~lpgs----~~~i~~l~~~~~~l~~~----------------------------- 122 (302)
T PF14870_consen 77 VGE-PGLLLHTTDGGKTWERVPLSSKLPGS----PFGITALGDGSAELAGD----------------------------- 122 (302)
T ss_dssp EEE-TTEEEEESSTTSS-EE----TT-SS-----EEEEEEEETTEEEEEET-----------------------------
T ss_pred EcC-CceEEEecCCCCCcEEeecCCCCCCC----eeEEEEcCCCcEEEEcC-----------------------------
Confidence 654 355555555554 33332 112222 22333333445554432
Q ss_pred ccCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCCCceEE
Q 015463 225 ITKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRT 302 (406)
Q Consensus 225 ~~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~pd~i~~ 302 (406)
.|.+|+=.-.....+.+... ....+.+..++|++.+.++. .+.+++-+-.|.. ..+.+. .....-.++.+
T Consensus 123 ----~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~--~G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf 194 (302)
T PF14870_consen 123 ----RGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSS--RGNFYSSWDPGQT--TWQPHNRNSSRRIQSMGF 194 (302)
T ss_dssp ----T--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEET--TSSEEEEE-TT-S--S-EEEE--SSS-EEEEEE
T ss_pred ----CCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEEC--cccEEEEecCCCc--cceEEccCccceehhcee
Confidence 14566554443444443322 22334566778888666653 5677765533321 111221 11122356778
Q ss_pred CCCCCEEEEEccC
Q 015463 303 NEKGEFWVAIHCR 315 (406)
Q Consensus 303 d~~G~lwv~~~~~ 315 (406)
+++|++|+....+
T Consensus 195 ~~~~~lw~~~~Gg 207 (302)
T PF14870_consen 195 SPDGNLWMLARGG 207 (302)
T ss_dssp -TTS-EEEEETTT
T ss_pred cCCCCEEEEeCCc
Confidence 8999999988665
No 168
>PTZ00420 coronin; Provisional
Probab=94.56 E-value=6.7 Score=40.66 Aligned_cols=117 Identities=9% Similarity=-0.010 Sum_probs=67.9
Q ss_pred CcceEEEEeCCCCcEE-EEeCCCcEEEEeCCCCe--EEEccc---ccCCcccccccceEEcCCCCEEEEeCCCchhhhcc
Q 015463 131 GRPLGLRFDKKTGDLY-IADAYFGLMKVGPEGGL--ATSLAT---EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQM 204 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~-Vad~~~gl~~~d~~~~~--~~~l~~---~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~ 204 (406)
+....+++.+.+++++ .+...+.|..+|..++. ...+.. ...+ ....++.+++++++...+.+.+
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSgS-------- 145 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSSG-------- 145 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEEe--------
Confidence 4467899988435544 44444667788865431 111000 0111 1235778899998865443321
Q ss_pred ccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 205 QKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 205 ~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
.++.|..||..+++.............+++++|++.+. +....+.|..|++.
T Consensus 146 -----------------------~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLa-t~s~D~~IrIwD~R 197 (568)
T PTZ00420 146 -----------------------FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLS-GTCVGKHMHIIDPR 197 (568)
T ss_pred -----------------------CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEE-EEecCCEEEEEECC
Confidence 14678889988776433222223356788999998664 44445678888865
No 169
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=94.55 E-value=0.048 Score=30.45 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=16.6
Q ss_pred ccccccceEEcCCCCEEEEeC
Q 015463 175 PLRFTNDLDIDDEGNVYFTDS 195 (406)
Q Consensus 175 ~~~~~~~l~~d~dG~ly~t~~ 195 (406)
+.+.+.+++.|++|+||+++.
T Consensus 3 ~~n~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 3 PNNNIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp SSSCEEEEEE-TTSCEEEEET
T ss_pred CCCeEEEEEEcCCcCEEEEeC
Confidence 345688999999999999973
No 170
>KOG4328 consensus WD40 protein [Function unknown]
Probab=94.51 E-value=5.3 Score=39.24 Aligned_cols=153 Identities=10% Similarity=0.061 Sum_probs=79.9
Q ss_pred ceEEEcCCC-CeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463 72 ESMAFDPLG-RGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (406)
Q Consensus 72 e~i~~d~~g-~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va 148 (406)
.+|.+.+.+ ..+|..++||.|...|-+ ...++......+.. -.++.+..+++.++++
T Consensus 238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~--------------------fs~~d~~~e~~~vl~~ 297 (498)
T KOG4328|consen 238 SGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIW--------------------FSSLDFSAESRSVLFG 297 (498)
T ss_pred cceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCcccee--------------------eeeccccCCCccEEEe
Confidence 566676543 247888888888777655 22222221111000 1233444456778888
Q ss_pred eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463 149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD 228 (406)
Q Consensus 149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 228 (406)
+..+-+..+|..++..+...-... -..++.+++.+-..-++++++.+
T Consensus 298 ~~~G~f~~iD~R~~~s~~~~~~lh---~kKI~sv~~NP~~p~~laT~s~D------------------------------ 344 (498)
T KOG4328|consen 298 DNVGNFNVIDLRTDGSEYENLRLH---KKKITSVALNPVCPWFLATASLD------------------------------ 344 (498)
T ss_pred ecccceEEEEeecCCccchhhhhh---hcccceeecCCCCchheeecccC------------------------------
Confidence 876555667765543222111111 12577888888766666665421
Q ss_pred CCeEEEEeCCCC--eEEEec---ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463 229 TGRVLKYDPTTK--QTTVLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 279 (406)
Q Consensus 229 ~g~l~~~d~~t~--~~~~~~---~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~ 279 (406)
+.+..||...- +...++ ..-...+...+||++..| ++....+.|..|+.
T Consensus 345 -~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl-~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 345 -QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTL-LTTCQDNEIRVFDS 398 (498)
T ss_pred -cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCce-EeeccCCceEEeec
Confidence 22333333211 110111 111234667899988874 55556678888875
No 171
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.47 E-value=2.4 Score=44.28 Aligned_cols=112 Identities=14% Similarity=0.069 Sum_probs=73.4
Q ss_pred CcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeE-EEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhcccccc
Q 015463 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~-~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~ 208 (406)
+..+.|...+ ++-|.-+..++.+-.+++..... ..+.. ..++.++++.| |.+.+++-+
T Consensus 370 ~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~H------ndfVTcVaFnPvDDryFiSGS------------- 429 (712)
T KOG0283|consen 370 ADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSH------NDFVTCVAFNPVDDRYFISGS------------- 429 (712)
T ss_pred hhheeccccc-CCeeEeccccccEEeecCCCcceeeEEec------CCeeEEEEecccCCCcEeecc-------------
Confidence 4456677776 66677776677777777665432 22221 25788999988 456666543
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 282 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~ 282 (406)
-+|++-.++....++..+.+--.....++++|||+..+| .+..+.+..|+..+-
T Consensus 430 -------------------LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avI-Gt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 430 -------------------LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVI-GTFNGYCRFYDTEGL 483 (712)
T ss_pred -------------------cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEE-EEeccEEEEEEccCC
Confidence 246677777766666555444444567999999998755 466788888887764
No 172
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=94.46 E-value=4.3 Score=38.80 Aligned_cols=97 Identities=16% Similarity=0.241 Sum_probs=62.5
Q ss_pred ccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceE
Q 015463 177 RFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGL 255 (406)
Q Consensus 177 ~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi 255 (406)
..+..+...+||.+|++.+- ++..+..+|+++++...+. .++....-+
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~-------------------------------gsssi~iWdpdtg~~~pL~~~glgg~slL 244 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASF-------------------------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLL 244 (445)
T ss_pred ceeeEEEEcCCCCEEeeccc-------------------------------CcceEEEEcCCCCCcccccccCCCceeeE
Confidence 34566777889999998753 1345889999999877765 444444457
Q ss_pred EEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC
Q 015463 256 SLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE 307 (406)
Q Consensus 256 ~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~ 307 (406)
-+|||++.++.+.. .++.++|-.. +.-+.|...-.+|.-..-+.++.|+
T Consensus 245 kwSPdgd~lfaAt~--davfrlw~e~-q~wt~erw~lgsgrvqtacWspcGs 293 (445)
T KOG2139|consen 245 KWSPDGDVLFAATC--DAVFRLWQEN-QSWTKERWILGSGRVQTACWSPCGS 293 (445)
T ss_pred EEcCCCCEEEEecc--cceeeeehhc-ccceecceeccCCceeeeeecCCCC
Confidence 79999998766543 4666666221 1122333443455555556688887
No 173
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=94.38 E-value=0.34 Score=48.81 Aligned_cols=127 Identities=20% Similarity=0.281 Sum_probs=72.6
Q ss_pred cceeccCcccCcceEEEcCCCCeeEEEecC-----------------CEEEEEeCC---------ceeEEEeecCCCccc
Q 015463 60 SEIKFLNQIQGPESMAFDPLGRGPYTGVAD-----------------GRILFWDGL---------KWTDFAFTSNNRSEL 113 (406)
Q Consensus 60 ~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~-----------------g~I~~~~~~---------~~~~~~~~~~~~~~~ 113 (406)
+..+....+..||.|++.+....+|+...+ |+|+||-+. +|..|...+.....
T Consensus 408 A~~lGAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~- 486 (616)
T COG3211 408 ADKLGATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVL- 486 (616)
T ss_pred HHHhCCccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccc-
Confidence 344555678899999999754336665332 468998654 34455443221100
Q ss_pred cCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCC---------cEEEE---eCCCCeEEEcccccCCcccccccc
Q 015463 114 CNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF---------GLMKV---GPEGGLATSLATEAEGVPLRFTND 181 (406)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~---------gl~~~---d~~~~~~~~l~~~~~~~~~~~~~~ 181 (406)
+...++ . -.....+.|-+|+||+ .|+|||++... |+..+ ++++++++.+.....+ ..+.+
T Consensus 487 -~~~~~~--~-~~~~~f~~PDnl~fD~-~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g---~E~tG 558 (616)
T COG3211 487 -EGGASA--N-INANWFNSPDNLAFDP-WGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIG---CEFTG 558 (616)
T ss_pred -cccccc--C-cccccccCCCceEECC-CCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCc---ceeec
Confidence 000000 0 0112356699999999 89999997642 34433 3445555555433222 23557
Q ss_pred eEEcCCC-CEEEEeC
Q 015463 182 LDIDDEG-NVYFTDS 195 (406)
Q Consensus 182 l~~d~dG-~ly~t~~ 195 (406)
.++.+|| ++|++-.
T Consensus 559 ~~FspD~~TlFV~vQ 573 (616)
T COG3211 559 PCFSPDGKTLFVNVQ 573 (616)
T ss_pred ceeCCCCceEEEEec
Confidence 7899998 6777754
No 174
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=94.35 E-value=1 Score=42.06 Aligned_cols=153 Identities=20% Similarity=0.268 Sum_probs=83.2
Q ss_pred CcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463 70 GPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~ 146 (406)
..-+|.++.|..++-+|..||+|..|.-. -.+.|. ..++.| ...+.|++++..+.
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd---------------------rAHtkG-vt~l~FSrD~SqiL 322 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD---------------------RAHTKG-VTCLSFSRDNSQIL 322 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh---------------------hhhccC-eeEEEEccCcchhh
Confidence 34677788888878889999988766432 111111 111112 44577887333344
Q ss_pred EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463 147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT 226 (406)
Q Consensus 147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 226 (406)
-+.....+..-..++|+. ...+.|- ..++|...+.+||+-.++.++
T Consensus 323 S~sfD~tvRiHGlKSGK~---LKEfrGH-sSyvn~a~ft~dG~~iisaSs------------------------------ 368 (508)
T KOG0275|consen 323 SASFDQTVRIHGLKSGKC---LKEFRGH-SSYVNEATFTDDGHHIISASS------------------------------ 368 (508)
T ss_pred cccccceEEEeccccchh---HHHhcCc-cccccceEEcCCCCeEEEecC------------------------------
Confidence 443333333333344432 1122222 357899999999988888765
Q ss_pred CCCCeEEEEeCCCCeEEEecccC---CCcceEEEec-CCCEEEEEeCCCCeEEEEEeeC
Q 015463 227 KDTGRVLKYDPTTKQTTVLLRNL---QFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 227 ~~~g~l~~~d~~t~~~~~~~~~~---~~~ngi~l~~-d~~~l~v~~t~~~~i~~~~~~g 281 (406)
+|.+-.++.+|.+...-...+ ...|.+.+-| +-..++|++. .+.++..++.|
T Consensus 369 --DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr-sntv~imn~qG 424 (508)
T KOG0275|consen 369 --DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR-SNTVYIMNMQG 424 (508)
T ss_pred --CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC-CCeEEEEeccc
Confidence 367777887766532211111 1224444444 3334555554 46788888765
No 175
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=94.28 E-value=0.058 Score=30.11 Aligned_cols=15 Identities=13% Similarity=0.656 Sum_probs=11.8
Q ss_pred ceEECCCCCEEEEEc
Q 015463 299 NVRTNEKGEFWVAIH 313 (406)
Q Consensus 299 ~i~~d~~G~lwv~~~ 313 (406)
.|..|++|++|+|+.
T Consensus 9 ~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 9 SIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEE-TTSCEEEEET
T ss_pred EEEEcCCcCEEEEeC
Confidence 467899999999985
No 176
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.28 E-value=3.6 Score=38.21 Aligned_cols=144 Identities=17% Similarity=0.175 Sum_probs=68.5
Q ss_pred CCeEEEEeCCCCeEEEe---cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC------CCcceeeeec-C-----
Q 015463 229 TGRVLKYDPTTKQTTVL---LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE------KAGNLEAFAI-L----- 293 (406)
Q Consensus 229 ~g~l~~~d~~t~~~~~~---~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~------~~~~~~~~~~-l----- 293 (406)
.|-|-.||... .+... ...--.|.-+.+.+||+.+.+++ +.|....-.|. .-..+-++.+ .
T Consensus 139 rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DGrtlvvan---GGIethpdfgR~~lNldsMePSlvlld~atG~li 214 (366)
T COG3490 139 RGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN---GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred CceEEEEeccc-ccceecccccCCcCcceeEEecCCcEEEEeC---CceecccccCccccchhhcCccEEEEeccccchh
Confidence 46677787763 33322 22234577899999999988874 33433311111 0000111111 1
Q ss_pred --CCCC--------CceEECCCCCEEEEEccCC--cchhhhhhcChhhhhhhhccCcccee-------eeeEeecCcceE
Q 015463 294 --PGYP--------DNVRTNEKGEFWVAIHCRR--SLYSHLMALYPKIRHFLLKLPISAKT-------HYLIHVGGRLHA 354 (406)
Q Consensus 294 --~g~p--------d~i~~d~~G~lwv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~ 354 (406)
.-+| .-+..+.||++|.+..... .-.-.++.. -..++-+.-++.++.. ...+.+. ...+
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~-~~~g~~l~~~~~pee~~~~~anYigsiA~n-~~~g 292 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGH-FRKGEPLEFLDLPEEQTAAFANYIGSIAAN-RRDG 292 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceee-ccCCCcCcccCCCHHHHHHHHhhhhheeec-ccCC
Confidence 1133 2356789999999975321 111111111 1111222222222211 1111111 2344
Q ss_pred EEEEECCCCCEEEEEECCCCCeee
Q 015463 355 MAVKYSPEGKILQVLEDSKGKVVK 378 (406)
Q Consensus 355 ~v~~~d~~g~~~~~~~~~~g~~~~ 378 (406)
.|..-+|.|+....+....|.+..
T Consensus 293 lV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 293 LVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred eEEEecCCCCeEEEEEcCCCcEEe
Confidence 555567889988888777787643
No 177
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=94.12 E-value=6.5 Score=38.77 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=50.8
Q ss_pred cCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463 69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (406)
Q Consensus 69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~ 146 (406)
..--++++..+|+.|-+|..+|.+..|+.+ ....+.. ..+....+...+ +|+.+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~-----------------------HkgPI~slKWnk-~G~yi 291 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQ-----------------------HKGPIFSLKWNK-KGTYI 291 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhc-----------------------cCCceEEEEEcC-CCCEE
Confidence 345788999999999999999999888876 2222211 123356788887 66644
Q ss_pred EE-eCCCcEEEEeCCCCeEEE
Q 015463 147 IA-DAYFGLMKVGPEGGLATS 166 (406)
Q Consensus 147 Va-d~~~gl~~~d~~~~~~~~ 166 (406)
++ +..+.+..+|..+++...
T Consensus 292 lS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 292 LSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred EeccCCccEEEEeccCceEEE
Confidence 44 334678889988777654
No 178
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=93.91 E-value=3.2 Score=39.86 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=88.2
Q ss_pred CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad 149 (406)
..-++.+.|+|..|.+|+.|-.+..||.+.-++... |.+ ..+-.+.++..| +|..+...
T Consensus 117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t--------~Kg------------H~~WVlcvawsP-Dgk~iASG 175 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT--------CKG------------HKNWVLCVAWSP-DGKKIASG 175 (480)
T ss_pred cEEEEEecCCCceEEecCCCceEEeeccCCCCccee--------ecC------------CccEEEEEEECC-Ccchhhcc
Confidence 345778889999899999999999998873222211 110 124467888999 66644433
Q ss_pred C-CCcEEEEeCCCCeEEEcccccCCcccccccceEEc-----CCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463 150 A-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID-----DEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI 223 (406)
Q Consensus 150 ~-~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d-----~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 223 (406)
. .+.|..+||++|+.. .....|- -..+++|+.. +..+...+.+
T Consensus 176 ~~dg~I~lwdpktg~~~--g~~l~gH-~K~It~Lawep~hl~p~~r~las~s---------------------------- 224 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQI--GRALRGH-KKWITALAWEPLHLVPPCRRLASSS---------------------------- 224 (480)
T ss_pred ccCCeEEEecCCCCCcc--cccccCc-ccceeEEeecccccCCCccceeccc----------------------------
Confidence 3 356999999987532 1111111 1234555543 3444333322
Q ss_pred cccCCCCeEEEEeCCCCeEEEecccCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 224 KITKDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 224 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
.+|.+..+|...++......+...+ ..+.. -|+.++++.+...+|..+...
T Consensus 225 ----kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw--GG~gliySgS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 225 ----KDGSVRIWDTKLGTCVRTLSGHTASVTCVRW--GGEGLIYSGSQDRTIKVWRAL 276 (480)
T ss_pred ----CCCCEEEEEccCceEEEEeccCccceEEEEE--cCCceEEecCCCceEEEEEcc
Confidence 2577888888766665555554333 23433 345566666655666666543
No 179
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=93.85 E-value=5.2 Score=36.69 Aligned_cols=185 Identities=9% Similarity=0.015 Sum_probs=104.1
Q ss_pred EEEcCCCCeeEEEecCCEEEEEeC---CceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463 74 MAFDPLGRGPYTGVADGRILFWDG---LKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (406)
Q Consensus 74 i~~d~~g~~ly~g~~~g~I~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~ 150 (406)
|-+..+|++||+...|.....|-. +++-++. ...|..+.+.+|.+...|..+.+
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-----------------------GHtGavW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-----------------------GHTGAVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeec-----------------------CCCceEEEEEecCCcceeeeccc
Confidence 446678998888877765544432 1222221 11345677777774556666666
Q ss_pred CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463 151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG 230 (406)
Q Consensus 151 ~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g 230 (406)
.+.+..+|.++|+....... + .-+..+.++.+|++........ ....+
T Consensus 73 D~t~kLWDv~tGk~la~~k~--~---~~Vk~~~F~~~gn~~l~~tD~~---------------------------mg~~~ 120 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKT--N---SPVKRVDFSFGGNLILASTDKQ---------------------------MGYTC 120 (327)
T ss_pred cceeEEEEcCCCcEEEEeec--C---CeeEEEeeccCCcEEEEEehhh---------------------------cCcce
Confidence 77788889888865432211 1 1245677888888666543210 11234
Q ss_pred eEEEEeCCC-------Ce-EEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cC-CCCCCce
Q 015463 231 RVLKYDPTT-------KQ-TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-IL-PGYPDNV 300 (406)
Q Consensus 231 ~l~~~d~~t-------~~-~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l-~g~pd~i 300 (406)
-|..||... .+ +.++...-..++...+++-++++ ++....+.|.+|++... ..-+-. +. ..-.+++
T Consensus 121 ~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i-i~Ghe~G~is~~da~~g---~~~v~s~~~h~~~Ind~ 196 (327)
T KOG0643|consen 121 FVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI-IAGHEDGSISIYDARTG---KELVDSDEEHSSKINDL 196 (327)
T ss_pred EEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE-EEecCCCcEEEEEcccC---ceeeechhhhccccccc
Confidence 455555542 12 22232223445556677888876 44556789999997632 110000 11 1135678
Q ss_pred EECCCCCEEEEEccCCc
Q 015463 301 RTNEKGEFWVAIHCRRS 317 (406)
Q Consensus 301 ~~d~~G~lwv~~~~~~~ 317 (406)
...++..++|+.....+
T Consensus 197 q~s~d~T~FiT~s~Dtt 213 (327)
T KOG0643|consen 197 QFSRDRTYFITGSKDTT 213 (327)
T ss_pred cccCCcceEEecccCcc
Confidence 88899999988655433
No 180
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.83 E-value=3.6 Score=40.38 Aligned_cols=179 Identities=17% Similarity=0.180 Sum_probs=92.2
Q ss_pred CcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCC-Ccc-ccCCCCCcccccccCCcCCcceEEEEeC--C
Q 015463 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNN-RSE-LCNPKPIATSYLKNEHICGRPLGLRFDK--K 141 (406)
Q Consensus 66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~p~gi~~d~--~ 141 (406)
..++.--++.+..||..+++|+.||.|..|..- ........ ... .|. ...| .-....|.++. -
T Consensus 121 aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~---~lv~a~~~~~~~p~~~---------f~~H-tlsITDl~ig~Gg~ 187 (476)
T KOG0646|consen 121 AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT---DLVSADNDHSVKPLHI---------FSDH-TLSITDLQIGSGGT 187 (476)
T ss_pred hhccceeEEEEeCCCcEEEecCCCccEEEEEEE---eecccccCCCccceee---------eccC-cceeEEEEecCCCc
Confidence 345666888898899989999999999988632 11111110 000 010 0011 11123444443 1
Q ss_pred CCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccCCCC
Q 015463 142 TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP 220 (406)
Q Consensus 142 ~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~ 220 (406)
+.+||-+..++-+..+|...+.+- .+..- ...++.+++|+-+ .+|+++....+-...+ ..+.
T Consensus 188 ~~rl~TaS~D~t~k~wdlS~g~LL--lti~f---p~si~av~lDpae~~~yiGt~~G~I~~~~~----------~~~~-- 250 (476)
T KOG0646|consen 188 NARLYTASEDRTIKLWDLSLGVLL--LTITF---PSSIKAVALDPAERVVYIGTEEGKIFQNLL----------FKLS-- 250 (476)
T ss_pred cceEEEecCCceEEEEEeccceee--EEEec---CCcceeEEEcccccEEEecCCcceEEeeeh----------hcCC--
Confidence 356888877778888888877432 11110 1246788999866 6888775422211100 0000
Q ss_pred CCCcccCCCCe-EEEEeCCCCeEEEecccCC--CcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 221 SPIKITKDTGR-VLKYDPTTKQTTVLLRNLQ--FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 221 ~~~~~~~~~g~-l~~~d~~t~~~~~~~~~~~--~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+...|- .-.++...-+...+...-. .-..++++-|+. ++++....+.+-.+++.
T Consensus 251 -----~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 251 -----GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIY 307 (476)
T ss_pred -----cccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecc
Confidence 000110 1112222223333332222 345789999996 55666656666666654
No 181
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.81 E-value=1.9 Score=42.02 Aligned_cols=82 Identities=16% Similarity=0.068 Sum_probs=46.0
Q ss_pred CeEEEEeCCCCeEEEecccCC-CcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCC--CceEECCCC
Q 015463 230 GRVLKYDPTTKQTTVLLRNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP--DNVRTNEKG 306 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~~~~~~-~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~p--d~i~~d~~G 306 (406)
..++.+|.++++.+++.++-. ...|..++++.+.+|+... ..+|+++++++.+ ...++.--.++- .....++++
T Consensus 60 ~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e--~~~vy~~p~~~~g~gt~v~n~d~ 136 (386)
T PF14583_consen 60 RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLE--ERVVYEVPDDWKGYGTWVANSDC 136 (386)
T ss_dssp -EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT----EEEEEE--TTEEEEEEEEE-TTS
T ss_pred cceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCc--EEEEEECCcccccccceeeCCCc
Confidence 469999999999999876542 2347788898888876654 4689999987532 223333111111 123357789
Q ss_pred CEEEEEcc
Q 015463 307 EFWVAIHC 314 (406)
Q Consensus 307 ~lwv~~~~ 314 (406)
+..++...
T Consensus 137 t~~~g~e~ 144 (386)
T PF14583_consen 137 TKLVGIEI 144 (386)
T ss_dssp SEEEEEEE
T ss_pred cEEEEEEE
Confidence 98888643
No 182
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.69 E-value=5.4 Score=39.40 Aligned_cols=177 Identities=12% Similarity=0.097 Sum_probs=74.4
Q ss_pred CCcceEEEEeCCCCcEEEEeCC-------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhh
Q 015463 130 CGRPLGLRFDKKTGDLYIADAY-------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRR 202 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~Vad~~-------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~ 202 (406)
..+|+.+.--+ +|+++|...+ .|++.+|.+|-++.-.-.. +.....+-.++-..+.-++-+|+. |+..
T Consensus 129 ~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~-~~~~~~~gYDfw~qpr~nvMiSSe---Wg~P 203 (461)
T PF05694_consen 129 LSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEK-DRGPQPFGYDFWYQPRHNVMISSE---WGAP 203 (461)
T ss_dssp EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--S-B-TT------EEEETTTTEEEE-B------H
T ss_pred CCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceecc-CCCCCCCCCCeEEcCCCCEEEEec---cCCh
Confidence 46688777777 7888886432 4799999886544322111 112234667788888888888863 2221
Q ss_pred ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC---CCcceEEEe--cCCCEEEEEeCCCCeEEEE
Q 015463 203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL---QFPNGLSLS--KDKSFFVFCEGSVGRLHKY 277 (406)
Q Consensus 203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~---~~~ngi~l~--~d~~~l~v~~t~~~~i~~~ 277 (406)
.....|-...++.. +.-..+|..+|..+++..+..+-- ..|--|.+. |+...=|+.-.-...||++
T Consensus 204 ~~~~~Gf~~~d~~~---------~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 204 SMFEKGFNPEDLEA---------GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp HHHTT---TTTHHH---------H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred hhcccCCChhHhhc---------ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEE
Confidence 11111211222222 333456999999988776543221 112223232 3344444444445678887
Q ss_pred EeeCCCCcceeee--------------------ecCCCCCCceEECCCCC-EEEEEccCCcchh
Q 015463 278 WLIGEKAGNLEAF--------------------AILPGYPDNVRTNEKGE-FWVAIHCRRSLYS 320 (406)
Q Consensus 278 ~~~g~~~~~~~~~--------------------~~l~g~pd~i~~d~~G~-lwv~~~~~~~~~~ 320 (406)
..+....=..+.+ ...|+++..|.++-|.+ |||++........
T Consensus 275 ~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdvrq 338 (461)
T PF05694_consen 275 YKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQ 338 (461)
T ss_dssp EE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEE
T ss_pred EEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEE
Confidence 6531100001111 11267788888887777 8999876544433
No 183
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.62 E-value=8.5 Score=38.41 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=62.8
Q ss_pred EEeCCCCcEEEEeCCC---cEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhcccccccccc
Q 015463 137 RFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQ 212 (406)
Q Consensus 137 ~~d~~~g~L~Vad~~~---gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~ 212 (406)
+|.++...|.++.... .||.+|..++....+... .+..- .=...+|| .|+|+....
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi~~----~Ps~spdG~~ivf~Sdr~--------------- 303 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGINT----SPSWSPDGSKIVFTSDRG--------------- 303 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-Ccccc----CccCCCCCCEEEEEeCCC---------------
Confidence 5566333444444433 489999988876554332 11100 12456788 566664321
Q ss_pred ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCe--EEEEEe
Q 015463 213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR--LHKYWL 279 (406)
Q Consensus 213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~--i~~~~~ 279 (406)
+ .-.|+++|+++++.+.+.........-.++|||+.+.+.....+. |..+++
T Consensus 304 -------------G--~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 304 -------------G--RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred -------------C--CcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence 1 226999999988887776554444455688999988777633333 444443
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=93.60 E-value=2.3 Score=40.90 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=64.9
Q ss_pred cceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccc
Q 015463 132 RPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIP 210 (406)
Q Consensus 132 ~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~ 210 (406)
..+.+.|.. +|.+++++.. +.|..+|+.++++..-.....|. .+....+-.+|.+ +|+..++...+++.
T Consensus 175 ~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~---k~~Raifl~~g~i-~tTGfsr~seRq~a----- 244 (472)
T KOG0303|consen 175 MVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA---KPARAIFLASGKI-FTTGFSRMSERQIA----- 244 (472)
T ss_pred eEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCC---CcceeEEeccCce-eeecccccccccee-----
Confidence 357888988 8999888876 67999999988754332222232 2444555667874 44432333222210
Q ss_pred ccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 211 LQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 211 ~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+. ++.++. . .+.+.-+|..+|-+-. -+++|.+.+|++.-+.+.|.-|.+.
T Consensus 245 Lw------dp~nl~--e-P~~~~elDtSnGvl~P-----------FyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 245 LW------DPNNLE--E-PIALQELDTSNGVLLP-----------FYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred cc------Cccccc--C-cceeEEeccCCceEEe-----------eecCCCCEEEEEecCCcceEEEEec
Confidence 00 000000 0 1223334433332211 1457888899998877777666655
No 185
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.57 E-value=2.5 Score=43.76 Aligned_cols=152 Identities=16% Similarity=0.095 Sum_probs=89.1
Q ss_pred EEEcCCCCeeEEEecCCEEEEEeCCceeE-EEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCC
Q 015463 74 MAFDPLGRGPYTGVADGRILFWDGLKWTD-FAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF 152 (406)
Q Consensus 74 i~~d~~g~~ly~g~~~g~I~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~ 152 (406)
++++++|..||+...+ +|..++...... +.... ..| ......+++++++..|+.+....
T Consensus 25 ~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~----~ed---------------~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGS----NED---------------EDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCCEEEEecCc-eEEEEEccCCceecccCC----ccc---------------hhhhheeeecCCccEEEEeeccc
Confidence 8999999988887654 577776551111 11111 011 12234677888444455554434
Q ss_pred cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeE
Q 015463 153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRV 232 (406)
Q Consensus 153 gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l 232 (406)
-+-.++.+++++...-......| +.-+++++.|.+..+- ..+|++
T Consensus 85 llrv~~L~tgk~irswKa~He~P---vi~ma~~~~g~LlAtg--------------------------------gaD~~v 129 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIRSWKAIHEAP---VITMAFDPTGTLLATG--------------------------------GADGRV 129 (775)
T ss_pred eEEEEEcccchHhHhHhhccCCC---eEEEEEcCCCceEEec--------------------------------cccceE
Confidence 45567777775432211111112 3457888888665543 235788
Q ss_pred EEEeCCCCeEEEecccCCCc-ceEEEecCCCE-EEEEeCCCCeEEEEEee
Q 015463 233 LKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSF-FVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 233 ~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~-l~v~~t~~~~i~~~~~~ 280 (406)
..+|-+.+.......++..+ ..+.+.|+... ++++....+.+..|++.
T Consensus 130 ~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 130 KVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLN 179 (775)
T ss_pred EEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcc
Confidence 88998888887777775554 34566666543 44555556788888876
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=1.6 Score=42.10 Aligned_cols=155 Identities=16% Similarity=0.140 Sum_probs=83.9
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEe-CCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWD-GLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~ 150 (406)
-.+++..+|..+=++..||.+..|+ +. ..++... .+ ..+....|.|.+ +|.+.+.-.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e-------------------~~-~~~eV~DL~FS~-dgk~lasig 205 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEE-------------------IA-HHAEVKDLDFSP-DGKFLASIG 205 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhh-------------------Hh-hcCccccceeCC-CCcEEEEec
Confidence 4667888888788888899888888 43 1111110 01 124466789998 887776665
Q ss_pred CCcEEEEeCCCCeEEEcccccCC-cccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463 151 YFGLMKVGPEGGLATSLATEAEG-VPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD 228 (406)
Q Consensus 151 ~~gl~~~d~~~~~~~~l~~~~~~-~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 228 (406)
......++.+++......+.... ..+..++ .-.|+++ .+++.+.- .+
T Consensus 206 ~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cR-F~~d~~~~~l~laa~~------------------------------~~ 254 (398)
T KOG0771|consen 206 ADSARVWSVNTGAALARKTPFSKDEMFSSCR-FSVDNAQETLRLAASQ------------------------------FP 254 (398)
T ss_pred CCceEEEEeccCchhhhcCCcccchhhhhce-ecccCCCceEEEEEec------------------------------CC
Confidence 56777788777732111111111 1111111 2233322 66766532 12
Q ss_pred CCeEEEEeCCC--C----eEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 229 TGRVLKYDPTT--K----QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 229 ~g~l~~~d~~t--~----~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
.+++..++... + +.+...........++++.||+++-+. |..+.|..|...
T Consensus 255 ~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG-T~dGsVai~~~~ 311 (398)
T KOG0771|consen 255 GGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG-TMDGSVAIYDAK 311 (398)
T ss_pred CCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe-ccCCcEEEEEec
Confidence 23343333221 1 222223333445678899999987665 557788888754
No 187
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=93.42 E-value=7.5 Score=37.13 Aligned_cols=109 Identities=22% Similarity=0.138 Sum_probs=67.1
Q ss_pred eeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463 62 IKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK 140 (406)
Q Consensus 62 ~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~ 140 (406)
++..+.+-...++++||-+..+-+|+.|+.|-.||.. +.-.....+ + ....-|+++++
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG--------------------h-i~~vr~vavS~ 203 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG--------------------H-IETVRGVAVSK 203 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc--------------------h-hheeeeeeecc
Confidence 3445677788999999977634457888888888876 322222111 0 11234678876
Q ss_pred CCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeC
Q 015463 141 KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS 195 (406)
Q Consensus 141 ~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~ 195 (406)
..-.|+-+..++.+-.+|.+..++..- ..| -+..+.+|+..+.-.+.++.+
T Consensus 204 rHpYlFs~gedk~VKCwDLe~nkvIR~---YhG-HlS~V~~L~lhPTldvl~t~g 254 (460)
T KOG0285|consen 204 RHPYLFSAGEDKQVKCWDLEYNKVIRH---YHG-HLSGVYCLDLHPTLDVLVTGG 254 (460)
T ss_pred cCceEEEecCCCeeEEEechhhhhHHH---hcc-ccceeEEEeccccceeEEecC
Confidence 444566665566788899886654221 112 245677788887766777753
No 188
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=93.24 E-value=9.2 Score=37.61 Aligned_cols=69 Identities=23% Similarity=0.224 Sum_probs=47.2
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCC
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY 151 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~ 151 (406)
-++++.+||..+-+|..+..|..|+.+...++... ....+...+++|-....+||.+...
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~--------------------~ghr~~V~~L~fr~gt~~lys~s~D 265 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF--------------------KGHRGAVSSLAFRKGTSELYSASAD 265 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecCcccchhhcc--------------------cccccceeeeeeecCccceeeeecC
Confidence 35688899997777777777778887632222111 1124556788887656789999988
Q ss_pred CcEEEEeCC
Q 015463 152 FGLMKVGPE 160 (406)
Q Consensus 152 ~gl~~~d~~ 160 (406)
+++-.++.+
T Consensus 266 rsvkvw~~~ 274 (479)
T KOG0299|consen 266 RSVKVWSID 274 (479)
T ss_pred CceEEEehh
Confidence 888777765
No 189
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=93.11 E-value=7.8 Score=36.47 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=24.1
Q ss_pred CcceEEEcCCCCeeEEEecCCEEEEEeCC
Q 015463 70 GPESMAFDPLGRGPYTGVADGRILFWDGL 98 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~ 98 (406)
...++++.+||..|-+.+.|+.|..|+.+
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~ 116 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVR 116 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecc
Confidence 45789999999977788889988888765
No 190
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.08 E-value=4.7 Score=39.13 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=54.9
Q ss_pred CeEEEEeCCCCeEEEecccCCCcc-eEEEecCCCEEEEEeCC----CCeEEEEEeeCCCCcceeeeecCCCCCC-ceEEC
Q 015463 230 GRVLKYDPTTKQTTVLLRNLQFPN-GLSLSKDKSFFVFCEGS----VGRLHKYWLIGEKAGNLEAFAILPGYPD-NVRTN 303 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~~~~~~~~n-gi~l~~d~~~l~v~~t~----~~~i~~~~~~g~~~~~~~~~~~l~g~pd-~i~~d 303 (406)
..|+.++.+++..+.+..+-...+ -+.++++++.+|+..+. ...|++++++ ..+..+.+....+ .. .+.++
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~--~~~~~~~LT~~~~-~~~~~~~S 336 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD--SGGEPKCLTCEDG-DHYSASFS 336 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT--ETTEEEESSTTSS-TTEEEEE-
T ss_pred cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC--CCCCeEeccCCCC-CceEEEEC
Confidence 579999999888777666554443 46688899999998775 3478888876 1233333332222 23 67889
Q ss_pred CCCCEEEEEccC
Q 015463 304 EKGEFWVAIHCR 315 (406)
Q Consensus 304 ~~G~lwv~~~~~ 315 (406)
++|+++|-...+
T Consensus 337 pdg~y~v~~~s~ 348 (353)
T PF00930_consen 337 PDGKYYVDTYSG 348 (353)
T ss_dssp TTSSEEEEEEES
T ss_pred CCCCEEEEEEcC
Confidence 999988877654
No 191
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.95 E-value=10 Score=37.45 Aligned_cols=83 Identities=14% Similarity=0.016 Sum_probs=39.3
Q ss_pred CeEEEEeCCCCeE-EEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCC----C-CCCceEE
Q 015463 230 GRVLKYDPTTKQT-TVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP----G-YPDNVRT 302 (406)
Q Consensus 230 g~l~~~d~~t~~~-~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~----g-~pd~i~~ 302 (406)
|.+++-+...+.. +.+. .......++++.+|+..+++.+ .+.+++-...|. ......|...+ + ...++..
T Consensus 259 G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~--~G~l~~S~d~G~-~~~~~~f~~~~~~~~~~~l~~v~~ 335 (398)
T PLN00033 259 GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTR--GGGLYVSKGTGL-TEEDFDFEEADIKSRGFGILDVGY 335 (398)
T ss_pred ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeC--CceEEEecCCCC-cccccceeecccCCCCcceEEEEE
Confidence 5566544433332 3322 2222335677777877554443 356655443321 11111222211 1 1234566
Q ss_pred CCCCCEEEEEccC
Q 015463 303 NEKGEFWVAIHCR 315 (406)
Q Consensus 303 d~~G~lwv~~~~~ 315 (406)
.+++.+|++...+
T Consensus 336 ~~d~~~~a~G~~G 348 (398)
T PLN00033 336 RSKKEAWAAGGSG 348 (398)
T ss_pred cCCCcEEEEECCC
Confidence 6788899988665
No 192
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.87 E-value=9.3 Score=37.79 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=36.7
Q ss_pred cceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEE--EcccccCCcccccccceEEcCCCCEEEEeC
Q 015463 132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLAT--SLATEAEGVPLRFTNDLDIDDEGNVYFTDS 195 (406)
Q Consensus 132 ~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~--~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~ 195 (406)
+..++.+.. +|.+|++...+++++-+-.+...+ .+...........+.++...+++++|++-.
T Consensus 282 ~l~~v~~~~-dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~ 346 (398)
T PLN00033 282 RIQNMGWRA-DGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG 346 (398)
T ss_pred ceeeeeEcC-CCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEEC
Confidence 345777877 899999987767666543332110 111110011112466788888899998864
No 193
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.85 E-value=16 Score=39.25 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=50.0
Q ss_pred CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT 142 (406)
Q Consensus 66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~ 142 (406)
|......|+.+++..+++...+.|+.|..||.. .++.|... ..|=+-++..| .
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre-----------------------ndRFW~laahP-~ 303 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE-----------------------NDRFWILAAHP-E 303 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc-----------------------CCeEEEEEecC-C
Confidence 455667899999888867777889999999876 33333221 24556678888 7
Q ss_pred CcEEEEeCCCcEEEEeC
Q 015463 143 GDLYIADAYFGLMKVGP 159 (406)
Q Consensus 143 g~L~Vad~~~gl~~~d~ 159 (406)
.|||.|.++.|+..|-.
T Consensus 304 lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 304 LNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred cceeeeecCCceEEEEE
Confidence 89998888778665543
No 194
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=92.80 E-value=5.3 Score=38.32 Aligned_cols=177 Identities=14% Similarity=0.123 Sum_probs=105.0
Q ss_pred CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcc--ccCCCCCcccc-cccCCcCCcceEEEEeC
Q 015463 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSE--LCNPKPIATSY-LKNEHICGRPLGLRFDK 140 (406)
Q Consensus 66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~p~gi~~d~ 140 (406)
|.-..-+++.++++|..+..|+.|..|-.|+.. ...++-.....+.. .-.....++.. ...+..-.....+.++.
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 555567999999999988889999989888722 11111110000000 00000000000 00011111133567776
Q ss_pred CCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463 141 KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP 220 (406)
Q Consensus 141 ~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~ 220 (406)
.+.+|-+..++.|..+|.+++....-. ..+ ...+++...+.-++.++.++
T Consensus 271 -~~v~yS~SwDHTIk~WDletg~~~~~~--~~~---ksl~~i~~~~~~~Ll~~gss------------------------ 320 (423)
T KOG0313|consen 271 -ATVIYSVSWDHTIKVWDLETGGLKSTL--TTN---KSLNCISYSPLSKLLASGSS------------------------ 320 (423)
T ss_pred -CCceEeecccceEEEEEeecccceeee--ecC---cceeEeecccccceeeecCC------------------------
Confidence 788998888899999999887543211 111 23567777777777777654
Q ss_pred CCCcccCCCCeEEEEeCCCCeEEEecccC----CCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 221 SPIKITKDTGRVLKYDPTTKQTTVLLRNL----QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~----~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+-.+..|||.++.-......+ ....++-.+|-+.+.+++....+.+..++..
T Consensus 321 --------dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 321 --------DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred --------CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 234777899887654433222 2345778889888999998888888888765
No 195
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.80 E-value=14 Score=38.58 Aligned_cols=82 Identities=15% Similarity=0.060 Sum_probs=45.1
Q ss_pred CCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceee-----ee-cCCCCCCceEE
Q 015463 229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEA-----FA-ILPGYPDNVRT 302 (406)
Q Consensus 229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~-----~~-~l~g~pd~i~~ 302 (406)
.+.++..+.++++... ..-.....+.+|+||+.+.+.-. ++|+.--+.....|..++ +. .+...+..+..
T Consensus 429 ~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 429 TGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG--GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC--CEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 4567766666555443 11123567899999999887653 577774333222222222 11 22222345666
Q ss_pred CCCCCEEEEEcc
Q 015463 303 NEKGEFWVAIHC 314 (406)
Q Consensus 303 d~~G~lwv~~~~ 314 (406)
-.++.|.|+...
T Consensus 505 ~~~~~L~V~~~~ 516 (591)
T PRK13616 505 RTGDSLVVGRSD 516 (591)
T ss_pred ecCCEEEEEecC
Confidence 667777777543
No 196
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.79 E-value=14 Score=38.67 Aligned_cols=191 Identities=15% Similarity=0.132 Sum_probs=98.1
Q ss_pred CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad 149 (406)
-..++++..+.. +..+..++.|..|+.+..+-+... .|+..++-.|-|.+..+.+|.
T Consensus 375 dVRsl~vS~d~~-~~~Sga~~SikiWn~~t~kciRTi----------------------~~~y~l~~~Fvpgd~~Iv~G~ 431 (888)
T KOG0306|consen 375 DVRSLCVSSDSI-LLASGAGESIKIWNRDTLKCIRTI----------------------TCGYILASKFVPGDRYIVLGT 431 (888)
T ss_pred heeEEEeecCce-eeeecCCCcEEEEEccCcceeEEe----------------------ccccEEEEEecCCCceEEEec
Confidence 346777876665 444445667888887633322211 155567777887333344444
Q ss_pred CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463 150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT 229 (406)
Q Consensus 150 ~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 229 (406)
-.+.|..||......-......+| .+.+++..+||.=++|.+..+ ..+-| +
T Consensus 432 k~Gel~vfdlaS~~l~Eti~AHdg----aIWsi~~~pD~~g~vT~saDk-tVkfW--------d---------------- 482 (888)
T KOG0306|consen 432 KNGELQVFDLASASLVETIRAHDG----AIWSISLSPDNKGFVTGSADK-TVKFW--------D---------------- 482 (888)
T ss_pred cCCceEEEEeehhhhhhhhhcccc----ceeeeeecCCCCceEEecCCc-EEEEE--------e----------------
Confidence 334477777654422111111112 355677777776666654210 01111 0
Q ss_pred CeEEEEe-CCCC-eEEEec--ccCC---CcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC--C-Cc
Q 015463 230 GRVLKYD-PTTK-QTTVLL--RNLQ---FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY--P-DN 299 (406)
Q Consensus 230 g~l~~~d-~~t~-~~~~~~--~~~~---~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~--p-d~ 299 (406)
-.+..+ |.|. ++-.+. ..+. ..-.+.+|||+++|.++-- .+.+..|.++. ...|..+.|. | -.
T Consensus 483 -f~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL-dnTVkVyflDt-----lKFflsLYGHkLPV~s 555 (888)
T KOG0306|consen 483 -FKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL-DNTVKVYFLDT-----LKFFLSLYGHKLPVLS 555 (888)
T ss_pred -EEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec-cCeEEEEEecc-----eeeeeeecccccceeE
Confidence 011111 1111 100010 1111 2346789999998877754 57888888763 3445555443 3 23
Q ss_pred eEECCCCCEEEEEccCCcch
Q 015463 300 VRTNEKGEFWVAIHCRRSLY 319 (406)
Q Consensus 300 i~~d~~G~lwv~~~~~~~~~ 319 (406)
+.+++|+.+.|+....+++-
T Consensus 556 mDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 556 MDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred EeccCCcCeEEeccCCCceE
Confidence 44567778888776665543
No 197
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=92.48 E-value=9.1 Score=35.61 Aligned_cols=162 Identities=14% Similarity=0.135 Sum_probs=89.7
Q ss_pred cceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEE
Q 015463 60 SEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL 136 (406)
Q Consensus 60 ~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 136 (406)
.++.+.|.+.-.-++.+.+|.+.+..++.||++..||.- +..-+.. .+.-....
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-----------------------~s~WVMtC 103 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-----------------------PSSWVMTC 103 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-----------------------CceeEEEE
Confidence 346777888788899999999989999999999999975 2211111 02224556
Q ss_pred EEeCCCCcEEEEeCC-CcEEEEeCCCCeEE---EcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccc
Q 015463 137 RFDKKTGDLYIADAY-FGLMKVGPEGGLAT---SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQ 212 (406)
Q Consensus 137 ~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~---~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~ 212 (406)
++.| .|++..+..- +-.-.|+..+...+ .......+- -.++.+..+-+|+.|.-+.
T Consensus 104 A~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH-tgylScC~f~dD~~ilT~S------------------ 163 (343)
T KOG0286|consen 104 AYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH-TGYLSCCRFLDDNHILTGS------------------ 163 (343)
T ss_pred EECC-CCCeEEecCcCceeEEEecccccccccceeeeeecCc-cceeEEEEEcCCCceEecC------------------
Confidence 7888 7776554322 22333443322111 111111111 1234444444465554332
Q ss_pred ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC-CCcceEEEec-CCCEEEEEeCCCCeEEEEEee
Q 015463 213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~-d~~~l~v~~t~~~~i~~~~~~ 280 (406)
++..-..+|.++++......+. ...-+++++| +++ .|++......-+.+++.
T Consensus 164 ---------------GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-tFvSg~cD~~aklWD~R 217 (343)
T KOG0286|consen 164 ---------------GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-TFVSGGCDKSAKLWDVR 217 (343)
T ss_pred ---------------CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC-eEEecccccceeeeecc
Confidence 2345667788888765544332 2334677888 665 56765544444455543
No 198
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.46 E-value=15 Score=38.17 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=34.2
Q ss_pred EecCCCEEEEEeCCCCeEEEEEeeCC-CCc-ceeeeecCCCCCCceEECCCCCEEEEEc
Q 015463 257 LSKDKSFFVFCEGSVGRLHKYWLIGE-KAG-NLEAFAILPGYPDNVRTNEKGEFWVAIH 313 (406)
Q Consensus 257 l~~d~~~l~v~~t~~~~i~~~~~~g~-~~~-~~~~~~~l~g~pd~i~~d~~G~lwv~~~ 313 (406)
+.+||++.++. .++|..++.... +.+ ...-++..+-.|-|+.+++||...+.++
T Consensus 284 ~vkdGK~~~V~---gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVan 339 (635)
T PRK02888 284 AVKAGKFKTIG---GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANG 339 (635)
T ss_pred hhhCCCEEEEC---CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeC
Confidence 44688888773 468888885420 112 2222334566799999999999555543
No 199
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.37 E-value=2.4 Score=45.37 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=67.0
Q ss_pred CcEEEEeCCCcEEEEeCCCCeEEEcccc-cCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463 143 GDLYIADAYFGLMKVGPEGGLATSLATE-AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221 (406)
Q Consensus 143 g~L~Vad~~~gl~~~d~~~~~~~~l~~~-~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 221 (406)
..-++|-..++|+++||.-..-+.+... ..-...+...+++.+.+|.|-+++.
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~-------------------------- 596 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN-------------------------- 596 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeC--------------------------
Confidence 3578888889999999974321111111 0112233466788899999988874
Q ss_pred CCcccCCCCeEEEEeCCCCeEEEecccCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463 222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWL 279 (406)
Q Consensus 222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i~~~~~ 279 (406)
.|.|-.||.-+.+.+....++..| -||.++.||++++.+ ....|..++.
T Consensus 597 -------~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaT--c~tyLlLi~t 646 (794)
T PF08553_consen 597 -------KGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILAT--CKTYLLLIDT 646 (794)
T ss_pred -------CCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEe--ecceEEEEEE
Confidence 377777887655556666666666 589999999977553 3556777664
No 200
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.32 E-value=5.2 Score=41.88 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=85.3
Q ss_pred CcceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE-
Q 015463 70 GPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL- 145 (406)
Q Consensus 70 gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L- 145 (406)
.--+|++.| |.+.+..|+-||++..|.-. ++..+.... .-...+++.| +|..
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-----------------------~lITAvcy~P-dGk~a 466 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-----------------------DLITAVCYSP-DGKGA 466 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-----------------------hhheeEEecc-CCceE
Confidence 346778886 44545568999999999754 444443211 2245678888 5654
Q ss_pred EEEeCCCcE-EEEeCCCCeEEEc----ccccCCcccccccceEEcCCC--CEEEEeCCCchhhhccccccccccccccCC
Q 015463 146 YIADAYFGL-MKVGPEGGLATSL----ATEAEGVPLRFTNDLDIDDEG--NVYFTDSSTNYQRRQMQKENIPLQLCSSLN 218 (406)
Q Consensus 146 ~Vad~~~gl-~~~d~~~~~~~~l----~~~~~~~~~~~~~~l~~d~dG--~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~ 218 (406)
.||+ .+|. ..|+..+-++..- .......+...+.++-+.+-. .+.+|+.
T Consensus 467 vIGt-~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn----------------------- 522 (712)
T KOG0283|consen 467 VIGT-FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN----------------------- 522 (712)
T ss_pred EEEE-eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecC-----------------------
Confidence 5555 4554 4555554433211 000001111234555544321 4777653
Q ss_pred CCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcc---eEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463 219 DPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPN---GLSLSKDKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 219 ~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~n---gi~l~~d~~~l~v~~t~~~~i~~~~~~g 281 (406)
+.+|-.||..+..+.....+....+ --.++.||+.++.+. ....|+.+..+.
T Consensus 523 ----------DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s-eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 523 ----------DSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS-EDSWVYIWKNDS 577 (712)
T ss_pred ----------CCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee-cCceEEEEeCCC
Confidence 3578888886555544444544433 345788999876554 567777777643
No 201
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.31 E-value=2.5 Score=40.58 Aligned_cols=92 Identities=12% Similarity=-0.003 Sum_probs=58.6
Q ss_pred CCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEEe
Q 015463 80 GRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVG 158 (406)
Q Consensus 80 g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d 158 (406)
...+.+.|.-+.+..||.. +.++++...- .| .....+...+....+|+++....|..||
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-----------------~E---~~is~~~l~p~gn~Iy~gn~~g~l~~FD 275 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDF-----------------LE---NPISSTGLTPSGNFIYTGNTKGQLAKFD 275 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEecc-----------------cc---CcceeeeecCCCcEEEEecccchhheec
Confidence 4457888999999999987 5556654321 11 1123455666345588998888899999
Q ss_pred CCCCeEEEcccccCCcccccccceEEcCCCCEEEEe
Q 015463 159 PEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTD 194 (406)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~ 194 (406)
..+++..-. ...|. -..+.+|..++.+.+..+.
T Consensus 276 ~r~~kl~g~--~~kg~-tGsirsih~hp~~~~las~ 308 (412)
T KOG3881|consen 276 LRGGKLLGC--GLKGI-TGSIRSIHCHPTHPVLASC 308 (412)
T ss_pred ccCceeecc--ccCCc-cCCcceEEEcCCCceEEee
Confidence 987754321 11221 2347788888877776654
No 202
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.28 E-value=5.6 Score=37.35 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=54.1
Q ss_pred CcceEEEEeCCCCcEEEEeCC-------------Cc-EEEEeCCCCeEEEcccccCCcccccccceEEcC------CCCE
Q 015463 131 GRPLGLRFDKKTGDLYIADAY-------------FG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD------EGNV 190 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~-------------~g-l~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~------dG~l 190 (406)
--|.+|.-- +++|||.-+. .| |-.+|+++..++++.+ +..++.|.+|++.+ .|.|
T Consensus 189 yAPFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as---~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 189 YAPFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS---SGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCcceEEE--CCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEecc---CCcccCCceeeeChhhhCCCCCCe
Confidence 347777654 6889987432 12 6788888877776643 34588999999876 3678
Q ss_pred EEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEE
Q 015463 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTT 243 (406)
Q Consensus 191 y~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~ 243 (406)
.+++.. +|+|-.||+.+++..
T Consensus 264 LVGNFG--------------------------------DG~InaFD~~sG~~~ 284 (336)
T TIGR03118 264 LVGNFG--------------------------------DGTINAYDPQSGAQL 284 (336)
T ss_pred EEeecC--------------------------------CceeEEecCCCCcee
Confidence 887643 689999999888753
No 203
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=92.25 E-value=0.54 Score=42.30 Aligned_cols=124 Identities=17% Similarity=0.092 Sum_probs=57.7
Q ss_pred cccccccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCccccccc-CCcC
Q 015463 54 KNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKN-EHIC 130 (406)
Q Consensus 54 ~~~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 130 (406)
++.....++|..++...=..|++++.|- ||+-+.+|.|+|.... .-..+.... .+ .. ....
T Consensus 66 ~~~~~~~~~Ig~g~W~~F~~i~~d~~G~-LYaV~~~G~lyR~~~~~~~~~~W~~~~---~~------------~iG~~GW 129 (229)
T PF14517_consen 66 NTWDSGSKQIGDGGWNSFKFIFFDPTGV-LYAVTPDGKLYRHPRPTNGSDNWIGGS---GK------------KIGGTGW 129 (229)
T ss_dssp --HHHH-EEEE-S-GGG-SEEEE-TTS--EEEEETT-EEEEES---STT--HHH-H---SE------------EEE-SSG
T ss_pred ccccccCcccccCcccceeEEEecCCcc-EEEeccccceeeccCCCccCcchhhcc---ce------------ecccCCC
Confidence 3444666777776333334899999997 9998999999988643 111110000 00 01 1112
Q ss_pred CcceEEEEeCCCCcEEEEeCCCcEEEE-eCCCCeEEEccc---ccCCcccccccceEEcCCCCEEEEeC
Q 015463 131 GRPLGLRFDKKTGDLYIADAYFGLMKV-GPEGGLATSLAT---EAEGVPLRFTNDLDIDDEGNVYFTDS 195 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~-d~~~~~~~~l~~---~~~~~~~~~~~~l~~d~dG~ly~t~~ 195 (406)
+....+.+++ +|.||+-+..+.+++. .+..+. ..... ...+........|...++|+||..++
T Consensus 130 ~~f~~vfa~~-~GvLY~i~~dg~~~~~~~p~~~~-~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~ 196 (229)
T PF14517_consen 130 NDFDAVFAGP-NGVLYAITPDGRLYRRYRPDGGS-DRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS 196 (229)
T ss_dssp GGEEEEEE-T-TS-EEEEETTE-EEEE---SSTT---HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E
T ss_pred ccceEEEeCC-CccEEEEcCCCceEEeCCCCCCC-CccccccceeccCCcccceEEeeCCCCcEEEEec
Confidence 3355678888 8999999866557776 343321 11111 11111122345577888999998854
No 204
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=92.24 E-value=2.6 Score=39.33 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=60.4
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEE
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIA 148 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Va 148 (406)
..+.+.|...+|..|+.|+.|..+|-. ..+. .......+-....|.|.| .|+ |.|+
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--------------------A~K~~qd~~~vrsiSfHP-sGefllvg 234 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--------------------AFKVFQDTEPVRSISFHP-SGEFLLVG 234 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecccHHHHH--------------------HHHHhhccceeeeEeecC-CCceEEEe
Confidence 456677777767777888877777643 1100 000001122245788998 555 6777
Q ss_pred eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463 149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS 196 (406)
Q Consensus 149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~ 196 (406)
+...-+..||..+-+.-.-... +..--..++++--.+.|+||+|.+.
T Consensus 235 TdHp~~rlYdv~T~QcfvsanP-d~qht~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 235 TDHPTLRLYDVNTYQCFVSANP-DDQHTGAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred cCCCceeEEeccceeEeeecCc-ccccccceeEEEecCCccEEEEecc
Confidence 7666677778776543222221 1122235777888899999999764
No 205
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=5.3 Score=35.43 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=20.2
Q ss_pred EEEEeCCCCcEEEEeCCC---cEEEEeCCCCeEE
Q 015463 135 GLRFDKKTGDLYIADAYF---GLMKVGPEGGLAT 165 (406)
Q Consensus 135 gi~~d~~~g~L~Vad~~~---gl~~~d~~~~~~~ 165 (406)
|+..+ +|.++.++... .|.+.|..+++..
T Consensus 50 GL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~ 81 (262)
T COG3823 50 GLEYL--DGHILESTGLYGFSKIRVSDLTTGQEI 81 (262)
T ss_pred ceeee--CCEEEEeccccccceeEEEeccCceEE
Confidence 56666 56888877543 4888888887653
No 206
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.93 E-value=10 Score=37.56 Aligned_cols=143 Identities=16% Similarity=0.181 Sum_probs=84.5
Q ss_pred CcccCcceEEEcCC-CCeeEEEecCCEEEEEeCCce-eEEEeecCCCccccCCCCCcccccccCCcCCcce-EEEEeCCC
Q 015463 66 NQIQGPESMAFDPL-GRGPYTGVADGRILFWDGLKW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL-GLRFDKKT 142 (406)
Q Consensus 66 ~~~~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-gi~~d~~~ 142 (406)
+.-..-.+.++.+. +.++++|++||.|.-||.... ..+. +..++.|. .+.+-+ .
T Consensus 151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~----------------------elnhg~pVe~vl~lp-s 207 (487)
T KOG0310|consen 151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV----------------------ELNHGCPVESVLALP-S 207 (487)
T ss_pred CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE----------------------EecCCCceeeEEEcC-C
Confidence 33344556666654 447899999999999987621 2211 11234443 456666 6
Q ss_pred CcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463 143 GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP 222 (406)
Q Consensus 143 g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 222 (406)
|.+++...++.+-.+|..+|.... .... .-...+.+|....++.-.++.+
T Consensus 208 gs~iasAgGn~vkVWDl~~G~qll-~~~~--~H~KtVTcL~l~s~~~rLlS~s--------------------------- 257 (487)
T KOG0310|consen 208 GSLIASAGGNSVKVWDLTTGGQLL-TSMF--NHNKTVTCLRLASDSTRLLSGS--------------------------- 257 (487)
T ss_pred CCEEEEcCCCeEEEEEecCCceeh-hhhh--cccceEEEEEeecCCceEeecc---------------------------
Confidence 788887777788889987543221 1111 1123577888877774444432
Q ss_pred CcccCCCCeEEEEeCCCCeEEEecccCCCcc---eEEEecCCCEEEEEeC
Q 015463 223 IKITKDTGRVLKYDPTTKQTTVLLRNLQFPN---GLSLSKDKSFFVFCEG 269 (406)
Q Consensus 223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~n---gi~l~~d~~~l~v~~t 269 (406)
-++.+-.||.. ..++ ..+..+|. .+++++|++.+++--+
T Consensus 258 -----LD~~VKVfd~t--~~Kv-v~s~~~~~pvLsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 258 -----LDRHVKVFDTT--NYKV-VHSWKYPGPVLSIAVSPDDQTVVIGMS 299 (487)
T ss_pred -----cccceEEEEcc--ceEE-EEeeecccceeeEEecCCCceEEEecc
Confidence 24678888843 3332 22334443 5789999888866543
No 207
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=91.93 E-value=8.1 Score=36.61 Aligned_cols=37 Identities=30% Similarity=0.492 Sum_probs=27.8
Q ss_pred cccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec
Q 015463 178 FTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL 246 (406)
Q Consensus 178 ~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~ 246 (406)
.+|+|..+++|++.++... ...|+++|+++|++.-.+
T Consensus 145 HiNsV~~~~~G~yLiS~R~--------------------------------~~~i~~I~~~tG~I~W~l 181 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRN--------------------------------TSTIYKIDPSTGKIIWRL 181 (299)
T ss_pred EeeeeeecCCccEEEEecc--------------------------------cCEEEEEECCCCcEEEEe
Confidence 4788999999998887532 356888998888765444
No 208
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.69 E-value=15 Score=36.41 Aligned_cols=222 Identities=15% Similarity=0.165 Sum_probs=109.6
Q ss_pred eEEEEeCCC-CcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccc
Q 015463 134 LGLRFDKKT-GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQ 212 (406)
Q Consensus 134 ~gi~~d~~~-g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~ 212 (406)
..|+|.|.. .++-|+ +..++..|+..+.........+. .-+.++.+-.||.+..+..
T Consensus 30 ssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~~srFk----~~v~s~~fR~DG~LlaaGD----------------- 87 (487)
T KOG0310|consen 30 SSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKTFSRFK----DVVYSVDFRSDGRLLAAGD----------------- 87 (487)
T ss_pred eeEecCCCCCCceEEe-cccEEEEEecchhhhhhhHHhhc----cceeEEEeecCCeEEEccC-----------------
Confidence 345666522 234444 34577777766543322111111 2356778888998887632
Q ss_pred ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCC-cceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee
Q 015463 213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF-PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA 291 (406)
Q Consensus 213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~-~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~ 291 (406)
..|.+-.||.++...-........ .+-+.++++.+.++++.. ..++.+||.... ..+..
T Consensus 88 ---------------~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s-Dd~v~k~~d~s~----a~v~~ 147 (487)
T KOG0310|consen 88 ---------------ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGS-DDKVVKYWDLST----AYVQA 147 (487)
T ss_pred ---------------CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecC-CCceEEEEEcCC----cEEEE
Confidence 247788888554222111222233 356778888888888765 467777764321 12344
Q ss_pred cCCCCCCceEE----CCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEE
Q 015463 292 ILPGYPDNVRT----NEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQ 367 (406)
Q Consensus 292 ~l~g~pd~i~~----d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~ 367 (406)
++.|.-|-++. +.++.+.++....+.+..+...... ..+..+.-..+....++.++.. +++ ...|+.+.
T Consensus 148 ~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg~pVe~vl~lpsgs---~ia-sAgGn~vk 220 (487)
T KOG0310|consen 148 ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHGCPVESVLALPSGS---LIA-SAGGNSVK 220 (487)
T ss_pred EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCCCceeeEEEcCCCC---EEE-EcCCCeEE
Confidence 56666665543 3445566665444433332211110 1122222222222233332111 221 34555555
Q ss_pred EEECCCCC--------eeeceeEEEEe--CCEEEEecCCCCeEEEEeC
Q 015463 368 VLEDSKGK--------VVKAISEVEEK--DGKLWMGSVLMPFVAVYDL 405 (406)
Q Consensus 368 ~~~~~~g~--------~~~~~s~~~~~--~g~Ly~Gs~~~~~i~~~~~ 405 (406)
+..--.|. ....++++... +-.|+-|++ ...+-+|++
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL-D~~VKVfd~ 267 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL-DRHVKVFDT 267 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCceEeeccc-ccceEEEEc
Confidence 54322221 22356666532 357888888 455666663
No 209
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=91.38 E-value=6.3 Score=38.24 Aligned_cols=107 Identities=13% Similarity=-0.003 Sum_probs=65.8
Q ss_pred CCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccc
Q 015463 130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENI 209 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~ 209 (406)
.|+...+...++.-.|..+...+-+-.+|..+..+........-.-....+.+++.|+|.+..+.+.
T Consensus 341 gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~------------- 407 (459)
T KOG0288|consen 341 GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA------------- 407 (459)
T ss_pred CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC-------------
Confidence 4556666666633346666555678888888776655433211111223667788888866555433
Q ss_pred cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCC---cceEEEecCCCEEEEEe
Q 015463 210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF---PNGLSLSKDKSFFVFCE 268 (406)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~---~ngi~l~~d~~~l~v~~ 268 (406)
+|.|+.++..+++++.....-.. -..+++++-|+.++-++
T Consensus 408 -------------------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 408 -------------------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred -------------------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 58899999999998876543322 24566777776665443
No 210
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=91.33 E-value=1.1 Score=33.94 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=42.4
Q ss_pred cCcceEEEcCCCC---------eeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEe
Q 015463 69 QGPESMAFDPLGR---------GPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD 139 (406)
Q Consensus 69 ~gpe~i~~d~~g~---------~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d 139 (406)
.||+++++..|+- ..|++..-+.++.+++++++..+. ....|.||.++
T Consensus 6 vG~~sFy~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~~~~~~va~-----------------------g~~~aNGI~~s 62 (86)
T PF01731_consen 6 VGPDSFYVTNDHYFTDPFLRLLETYLGLPWGNVVYYDGKEVKVVAS-----------------------GFSFANGIAIS 62 (86)
T ss_pred ECcCcEEEECchhhCcHHHHHHHHHhcCCCceEEEEeCCEeEEeec-----------------------cCCCCceEEEc
Confidence 4677777765531 013444556777777764433321 13458999999
Q ss_pred CCCCcEEEEeCC-CcEEEEeC
Q 015463 140 KKTGDLYIADAY-FGLMKVGP 159 (406)
Q Consensus 140 ~~~g~L~Vad~~-~gl~~~d~ 159 (406)
+++..|||++.. ..|..+..
T Consensus 63 ~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 63 PDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred CCCCEEEEEeccCCeEEEEEe
Confidence 866789999976 45666643
No 211
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=91.14 E-value=15 Score=35.25 Aligned_cols=107 Identities=12% Similarity=0.142 Sum_probs=67.2
Q ss_pred eccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463 63 KFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK 141 (406)
Q Consensus 63 ~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~ 141 (406)
-.-|.+.+..++..-|.-+.|+++..|-.+..||.. +.......+ . .+....+.+.+-
T Consensus 230 ~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G-H--------------------~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 230 HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG-H--------------------TNPVASVMCQPT 288 (460)
T ss_pred HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC-C--------------------CCcceeEEeecC
Confidence 345677788888887766779999999988889876 222221111 0 111233445444
Q ss_pred CCcEEEEeCCCcEEEEeCCCCeEE-EcccccCCcccccccceEEcCCCCEEEEeC
Q 015463 142 TGDLYIADAYFGLMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDS 195 (406)
Q Consensus 142 ~g~L~Vad~~~gl~~~d~~~~~~~-~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~ 195 (406)
++.++-+..+..|..+|...|+.. .+... ...+..++..++-+++.+.+
T Consensus 289 dpqvit~S~D~tvrlWDl~agkt~~tlt~h-----kksvral~lhP~e~~fASas 338 (460)
T KOG0285|consen 289 DPQVITGSHDSTVRLWDLRAGKTMITLTHH-----KKSVRALCLHPKENLFASAS 338 (460)
T ss_pred CCceEEecCCceEEEeeeccCceeEeeecc-----cceeeEEecCCchhhhhccC
Confidence 677888887778888998766432 22111 23467788888877777654
No 212
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.10 E-value=6.5 Score=42.46 Aligned_cols=116 Identities=10% Similarity=0.123 Sum_probs=67.1
Q ss_pred cccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCC--c-----ccccccCCcCCcceEEEEe
Q 015463 67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPI--A-----TSYLKNEHICGRPLGLRFD 139 (406)
Q Consensus 67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~p~gi~~d 139 (406)
+...-.++.+.+||..++.|+.+.-|..|..... ..+..|...+. . +.+ ......+....+..+
T Consensus 68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~--------~~~~~fgs~g~~~~vE~wk~~~-~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI--------GSGTVFGSTGGAKNVESWKVVS-ILRGHDSDVLDVNWS 138 (942)
T ss_pred ccCceeEEEECCCCCeEeeccCcceEEEeeeccc--------CCcccccccccccccceeeEEE-EEecCCCccceeccC
Confidence 3334467779999998888988877666754410 00111211000 0 000 011123556778888
Q ss_pred CCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463 140 KKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS 196 (406)
Q Consensus 140 ~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~ 196 (406)
+ ++.+.+.-.. +.+..++..+-+...... + ....+-++.+||-|..+.+.+.
T Consensus 139 p-~~~~lvS~s~DnsViiwn~~tF~~~~vl~---~-H~s~VKGvs~DP~Gky~ASqsd 191 (942)
T KOG0973|consen 139 P-DDSLLVSVSLDNSVIIWNAKTFELLKVLR---G-HQSLVKGVSWDPIGKYFASQSD 191 (942)
T ss_pred C-CccEEEEecccceEEEEccccceeeeeee---c-ccccccceEECCccCeeeeecC
Confidence 8 7777766554 678999877653222111 1 1235778999999988777654
No 213
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.76 E-value=8.9 Score=39.42 Aligned_cols=188 Identities=18% Similarity=0.183 Sum_probs=93.1
Q ss_pred CCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cEEEEeCCCcEEE
Q 015463 78 PLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DLYIADAYFGLMK 156 (406)
Q Consensus 78 ~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L~Vad~~~gl~~ 156 (406)
+.++.||+|..||.|..|+-.+..... +..|.. .+++...-...|+... ++ +|+-+.+...+-.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~------s~~~~a--------sme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEP------STPYIA--------SMEHHSDWVNDIILCG-NGKTLISASSDTTVKV 99 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCc------ccchhh--------hhhhhHhHHhhHHhhc-CCCceEEecCCceEEE
Confidence 356679999999999998754111100 000110 1222223344555554 44 4555555556666
Q ss_pred EeCCCCeEEEcccccCCcccccccceEE-cCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEE
Q 015463 157 VGPEGGLATSLATEAEGVPLRFTNDLDI-DDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKY 235 (406)
Q Consensus 157 ~d~~~~~~~~l~~~~~~~~~~~~~~l~~-d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~ 235 (406)
++...+. . .-...-+.--.++.+|+. .++..+.++. .-+++++.|
T Consensus 100 W~~~~~~-~-~c~stir~H~DYVkcla~~ak~~~lvaSg--------------------------------GLD~~IflW 145 (735)
T KOG0308|consen 100 WNAHKDN-T-FCMSTIRTHKDYVKCLAYIAKNNELVASG--------------------------------GLDRKIFLW 145 (735)
T ss_pred eecccCc-c-hhHhhhhcccchheeeeecccCceeEEec--------------------------------CCCccEEEE
Confidence 6654332 0 000001112235677777 5555555543 123568888
Q ss_pred eCCCCeEEEec-------ccCC-Cc----ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceE--
Q 015463 236 DPTTKQTTVLL-------RNLQ-FP----NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVR-- 301 (406)
Q Consensus 236 d~~t~~~~~~~-------~~~~-~~----ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~-- 301 (406)
|-+++..+.+. ..+. .+ ..+|..+.+ +++++....+.|..|+.. +. +....+.|.-||++
T Consensus 146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDpr---t~--~kimkLrGHTdNVr~l 219 (735)
T KOG0308|consen 146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPR---TC--KKIMKLRGHTDNVRVL 219 (735)
T ss_pred EccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccc---cc--cceeeeeccccceEEE
Confidence 88766321111 0111 11 234443333 577776655555555533 22 22334557788865
Q ss_pred -ECCCCCEEEEEccCCcchh
Q 015463 302 -TNEKGEFWVAIHCRRSLYS 320 (406)
Q Consensus 302 -~d~~G~lwv~~~~~~~~~~ 320 (406)
++.||+-.++..+...+-+
T Consensus 220 l~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 220 LVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred EEcCCCCeEeecCCCceEEe
Confidence 5788876666555444433
No 214
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.69 E-value=23 Score=36.83 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=63.6
Q ss_pred eEEEEeCCCCcEEEEeCCC------cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccc
Q 015463 134 LGLRFDKKTGDLYIADAYF------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKE 207 (406)
Q Consensus 134 ~gi~~d~~~g~L~Vad~~~------gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~ 207 (406)
.|++.- +|.||+.-... .+-+||+.+.+.+........ ..-.+++ .-+|.||+.-.....
T Consensus 374 ~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~---r~~~gv~-~~~g~iYi~GG~~~~-------- 439 (571)
T KOG4441|consen 374 FGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR---RSGHGVA-VLGGKLYIIGGGDGS-------- 439 (571)
T ss_pred ceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc---eeeeEEE-EECCEEEEEcCcCCC--------
Confidence 455555 68888765433 388999998877665432111 1111222 338899998642110
Q ss_pred cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc--CCCcceEEEecCCCEEEEEeCCC-----CeEEEEEee
Q 015463 208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSV-----GRLHKYWLI 280 (406)
Q Consensus 208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~~ngi~l~~d~~~l~v~~t~~-----~~i~~~~~~ 280 (406)
...-..+.+|||.+++++....- -..-.|++.. ++.+|+..... ..+.+|+..
T Consensus 440 ------------------~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 440 ------------------SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred ------------------ccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCC
Confidence 00124699999999988765422 2223455543 34577775422 236667754
No 215
>PHA02713 hypothetical protein; Provisional
Probab=90.67 E-value=21 Score=37.00 Aligned_cols=153 Identities=8% Similarity=-0.016 Sum_probs=69.8
Q ss_pred CCcEEEEeCCC------cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463 142 TGDLYIADAYF------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS 215 (406)
Q Consensus 142 ~g~L~Vad~~~------gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~ 215 (406)
+|.||+..... .+.+||+.+++.+.+...... .... .++ .-+|.||+........ .+.. ...+..+-
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~--r~~~-~~~-~~~g~IYviGG~~~~~--~~~~-~~~~~~~~ 423 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA--LSSY-GMC-VLDQYIYIIGGRTEHI--DYTS-VHHMNSID 423 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc--cccc-cEE-EECCEEEEEeCCCccc--cccc-cccccccc
Confidence 67888864432 378899998877655432111 1111 222 2378999864321000 0000 00000000
Q ss_pred cCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc--CCCcceEEEecCCCEEEEEeCCC------CeEEEEEeeCCCCcce
Q 015463 216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSV------GRLHKYWLIGEKAGNL 287 (406)
Q Consensus 216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~~ngi~l~~d~~~l~v~~t~~------~~i~~~~~~g~~~~~~ 287 (406)
. . .-......+.+|||++++++.+..- .....+++.. ++ .+|+..... ..+.+|++.. ..+.
T Consensus 424 ~---~---~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~--~~~W 493 (557)
T PHA02713 424 M---E---EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNT--YNGW 493 (557)
T ss_pred c---c---ccccccceEEEECCCCCeEeecCCCCcccccCcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCC--CCCe
Confidence 0 0 0000124699999999988765421 1112244433 34 477764321 2467777542 0233
Q ss_pred eeeecCCC--CCCceEECCCCCEEEEE
Q 015463 288 EAFAILPG--YPDNVRTNEKGEFWVAI 312 (406)
Q Consensus 288 ~~~~~l~g--~pd~i~~d~~G~lwv~~ 312 (406)
+....++- .--+++. -+|.||+..
T Consensus 494 ~~~~~m~~~r~~~~~~~-~~~~iyv~G 519 (557)
T PHA02713 494 ELITTTESRLSALHTIL-HDNTIMMLH 519 (557)
T ss_pred eEccccCcccccceeEE-ECCEEEEEe
Confidence 33333321 1123333 367888854
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=90.59 E-value=6.5 Score=39.82 Aligned_cols=161 Identities=13% Similarity=0.198 Sum_probs=89.7
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cEEE
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DLYI 147 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L~V 147 (406)
.++-+.+...++-+|+.+|.+-.||+. .+..+-... .... . .-......+..+.|+. +| .+-|
T Consensus 179 N~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~-~v~s--~---------pg~~~~~svTal~F~d-~gL~~aV 245 (703)
T KOG2321|consen 179 NVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS-SVNS--H---------PGGDAAPSVTALKFRD-DGLHVAV 245 (703)
T ss_pred eeeeecCccceEEecccCceEEEecchhhhhheeeeccc-ccCC--C---------ccccccCcceEEEecC-CceeEEe
Confidence 556666666767889999999999876 222221110 0000 0 0001122366788875 44 5677
Q ss_pred EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463 148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227 (406)
Q Consensus 148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 227 (406)
+++.+.++.+|..+.+-..........+...+.-+..|....++-.|.
T Consensus 246 Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk-------------------------------- 293 (703)
T KOG2321|consen 246 GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK-------------------------------- 293 (703)
T ss_pred eccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecch--------------------------------
Confidence 887777999998876533333332333332222222221223333332
Q ss_pred CCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
..+-.||+.+|+.-...+.....|-+|+-++...++.+.. ...+..|.+-
T Consensus 294 --~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane-~~~m~~yyiP 343 (703)
T KOG2321|consen 294 --RILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE-SSKMHTYYIP 343 (703)
T ss_pred --HHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC-CCcceeEEcc
Confidence 1244567788877777777777888998888766655543 4566666543
No 217
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=90.14 E-value=21 Score=35.31 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=39.7
Q ss_pred eEEEEeCCCCcEEEEe-CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463 134 LGLRFDKKTGDLYIAD-AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS 196 (406)
Q Consensus 134 ~gi~~d~~~g~L~Vad-~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~ 196 (406)
..++-++ .|.+.++. -.+.||.+...+|.+-..... -...+..|.+..||.++||.+.
T Consensus 85 ~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~a----HYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 85 HALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSA----HYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred eeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHh----hccceeEEEEeCCCcEEEecCC
Confidence 4667676 78877776 446799999998865332211 1234677888889999998654
No 218
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.92 E-value=19 Score=34.57 Aligned_cols=121 Identities=18% Similarity=0.198 Sum_probs=61.0
Q ss_pred EEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeee---ec-------CCCCCCceEEC-CCCCEEEEEccCCcchhh---
Q 015463 256 SLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF---AI-------LPGYPDNVRTN-EKGEFWVAIHCRRSLYSH--- 321 (406)
Q Consensus 256 ~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~---~~-------l~g~pd~i~~d-~~G~lwv~~~~~~~~~~~--- 321 (406)
+++.++..+|+. +.++.|+..++.+....-...+ .+ .||-=.-++++ ..|+|||-++.+..--..
T Consensus 190 ~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpg 268 (342)
T PF06433_consen 190 AYSRDGGRLYFV-SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPG 268 (342)
T ss_dssp EEETTTTEEEEE-BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-E
T ss_pred ceECCCCeEEEE-ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCc
Confidence 344555566665 5678999999987643222222 11 12222235664 567899988754321111
Q ss_pred --hhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeee
Q 015463 322 --LMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVK 378 (406)
Q Consensus 322 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~ 378 (406)
...-+...++.++|++.... ...+.+-......++.++.....+.+|...+|+...
T Consensus 269 teVWv~D~~t~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLEHP-IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEEEE-ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred eEEEEEECCCCeEEEEEeCCCc-cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 11114556777777766433 223444334444566666655566666666665443
No 219
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=89.40 E-value=15 Score=33.35 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=31.3
Q ss_pred CcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEc
Q 015463 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL 167 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l 167 (406)
.+..||.+-+.+|.||--....+||.+|+.++..+.+
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~v 63 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPV 63 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEe
Confidence 4467999998899999887778999999999987665
No 220
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=89.38 E-value=26 Score=35.44 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=65.1
Q ss_pred eEEEEeCCCCeEEEecccCCCcceEEEecCCCEE-EEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCc-eEECCCCCE
Q 015463 231 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFF-VFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN-VRTNEKGEF 308 (406)
Q Consensus 231 ~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l-~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~-i~~d~~G~l 308 (406)
.|+.++.++....+-+..-.-.+.++++++++-. .|..---..+..|++++ .++.+++--|.| +.+++.|++
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~~v~df~egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------KPVFDFPEGPRNTAFFNPHGNI 325 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC------CEeEeCCCCCccceEECCCCCE
Confidence 4888887744444434433344678888887543 33333345788888764 233344333666 667999995
Q ss_pred E-EEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEE
Q 015463 309 W-VAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVL 369 (406)
Q Consensus 309 w-v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~ 369 (406)
. +|..+....-..+. +-..++.+.++... +..++.+.|+|+.+..-
T Consensus 326 i~lAGFGNL~G~mEvw--Dv~n~K~i~~~~a~-------------~tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVW--DVPNRKLIAKFKAA-------------NTTVFEWSPDGEYFLTA 372 (566)
T ss_pred EEEeecCCCCCceEEE--eccchhhccccccC-------------CceEEEEcCCCcEEEEE
Confidence 4 44332211100000 12236666665433 23478888999877654
No 221
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.18 E-value=20 Score=33.93 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=64.4
Q ss_pred CcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccc
Q 015463 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIP 210 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~ 210 (406)
+.|.++.... ++..+++.....||+=.-.+...+.+..... ..++++...+||.+....+.
T Consensus 104 gs~~~i~~l~-~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~----gs~~~~~r~~dG~~vavs~~-------------- 164 (302)
T PF14870_consen 104 GSPFGITALG-DGSAELAGDRGAIYRTTDGGKTWQAVVSETS----GSINDITRSSDGRYVAVSSR-------------- 164 (302)
T ss_dssp S-EEEEEEEE-TTEEEEEETT--EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETT--------------
T ss_pred CCeeEEEEcC-CCcEEEEcCCCcEEEeCCCCCCeeEcccCCc----ceeEeEEECCCCcEEEEECc--------------
Confidence 5577776554 5677777766667766544444444433222 34566777788875544432
Q ss_pred ccccccCCCCCCCcccCCCCeEE-EEeCCCCeEEEecc-cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCccee
Q 015463 211 LQLCSSLNDPSPIKITKDTGRVL-KYDPTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE 288 (406)
Q Consensus 211 ~~~~~e~~~~~~~~~~~~~g~l~-~~d~~t~~~~~~~~-~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~ 288 (406)
|.++ ..|+.....+.... .-..-+.+.+++|+. +|+.. .++.|..-+ .. ...+
T Consensus 165 -------------------G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~-~~---~~~~ 219 (302)
T PF14870_consen 165 -------------------GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSD-DP---DDGE 219 (302)
T ss_dssp -------------------SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE--T---TEEE
T ss_pred -------------------ccEEEEecCCCccceEEccCccceehhceecCCCC-EEEEe-CCcEEEEcc-CC---CCcc
Confidence 4454 34553223333332 223445678888875 55554 334554443 11 1122
Q ss_pred eeec----C--CCC-CCceEECCCCCEEEEEccC
Q 015463 289 AFAI----L--PGY-PDNVRTNEKGEFWVAIHCR 315 (406)
Q Consensus 289 ~~~~----l--~g~-pd~i~~d~~G~lwv~~~~~ 315 (406)
.+.. . .++ --.++..+++.+|++..++
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 2221 1 111 1234667788899988765
No 222
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.08 E-value=36 Score=36.67 Aligned_cols=153 Identities=16% Similarity=0.241 Sum_probs=92.1
Q ss_pred cCcceEEEcCCCCeeEEEecCCEEEEEeCC--c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463 69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (406)
Q Consensus 69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L 145 (406)
...-++.+.|.-=.+.++.++|.|--||-. . +..| .+| .|..-|+.|.+ .+-|
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF----------------------deH-dGpVRgv~FH~-~qpl 65 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF----------------------DEH-DGPVRGVDFHP-TQPL 65 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh----------------------hcc-CCccceeeecC-CCCe
Confidence 344566777765556778999999888865 1 1111 112 35567999999 8899
Q ss_pred EEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463 146 YIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK 224 (406)
Q Consensus 146 ~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 224 (406)
+|...+ ..|-.++-++.+. +.+. -| -+.++..+.++.+ .=|+-..|
T Consensus 66 FVSGGDDykIkVWnYk~rrc--lftL-~G-HlDYVRt~~FHhe-yPWIlSAS---------------------------- 112 (1202)
T KOG0292|consen 66 FVSGGDDYKIKVWNYKTRRC--LFTL-LG-HLDYVRTVFFHHE-YPWILSAS---------------------------- 112 (1202)
T ss_pred EEecCCccEEEEEeccccee--hhhh-cc-ccceeEEeeccCC-CceEEEcc----------------------------
Confidence 998654 4566666655432 2111 11 1345666666654 34554433
Q ss_pred ccCCCCeEEEEeCCCCeEEEecccCC-CcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463 225 ITKDTGRVLKYDPTTKQTTVLLRNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 282 (406)
Q Consensus 225 ~~~~~g~l~~~d~~t~~~~~~~~~~~-~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~ 282 (406)
.+..+..+|-+++.....+++.. +.-+-++.|-++ ++|+.+-...|.+++++|-
T Consensus 113 ---DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 113 ---DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred ---CCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecch
Confidence 12346667777776665555532 223445777665 5577777788888888874
No 223
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=89.03 E-value=6.7 Score=39.14 Aligned_cols=81 Identities=21% Similarity=0.156 Sum_probs=49.2
Q ss_pred CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCC--eEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC
Q 015463 230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG--RLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE 307 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~--~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~ 307 (406)
-.||.+|..+++...+.+.......-.++|||+.++++....+ .|++++++|... ..+..-.+...+-..++||.
T Consensus 262 ~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 262 PDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred ccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCCCCCC
Confidence 3589999988886665544333334568999999988865444 588888876432 22221112222445567787
Q ss_pred EEEEEc
Q 015463 308 FWVAIH 313 (406)
Q Consensus 308 lwv~~~ 313 (406)
..+-..
T Consensus 339 ~i~~~~ 344 (425)
T COG0823 339 KIVFES 344 (425)
T ss_pred EEEEEe
Confidence 555443
No 224
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=89.00 E-value=19 Score=33.25 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=65.9
Q ss_pred cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT 142 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~ 142 (406)
++.-....++|+.|.|+.|-+++.+..+..+... .+.-++.. |...+...++++.. +
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l--------------------EGHEnEVK~Vaws~-s 116 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL--------------------EGHENEVKCVAWSA-S 116 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee--------------------eccccceeEEEEcC-C
Confidence 3444667899999999988889999988888654 44444322 22245577899998 6
Q ss_pred CcEEE-EeCCCcEEEEeCC-CCeEEEcccccCCcccccccceEEcCCCCEEEEeC
Q 015463 143 GDLYI-ADAYFGLMKVGPE-GGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS 195 (406)
Q Consensus 143 g~L~V-ad~~~gl~~~d~~-~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~ 195 (406)
|++.. +..++.++.+..+ .+++....-..+ -...+-.+..+|.-.|.|+-+
T Consensus 117 G~~LATCSRDKSVWiWe~deddEfec~aVL~~--HtqDVK~V~WHPt~dlL~S~S 169 (312)
T KOG0645|consen 117 GNYLATCSRDKSVWIWEIDEDDEFECIAVLQE--HTQDVKHVIWHPTEDLLFSCS 169 (312)
T ss_pred CCEEEEeeCCCeEEEEEecCCCcEEEEeeecc--ccccccEEEEcCCcceeEEec
Confidence 66544 4334555555433 344544322111 112345567777667777764
No 225
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=88.64 E-value=23 Score=33.92 Aligned_cols=150 Identities=15% Similarity=0.084 Sum_probs=80.3
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE-eC
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA-DA 150 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va-d~ 150 (406)
=+++..|+.++.-+|..|..-+.|+...-. ++.. | .++ ......+.|.. +|.+... +.
T Consensus 68 Favsl~P~~~l~aTGGgDD~AflW~~~~ge-~~~e-------l-----------tgH-KDSVt~~~Fsh-dgtlLATGdm 126 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGDDLAFLWDISTGE-FAGE-------L-----------TGH-KDSVTCCSFSH-DGTLLATGDM 126 (399)
T ss_pred EEEEeCCCCceEEecCCCceEEEEEccCCc-ceeE-------e-----------cCC-CCceEEEEEcc-CceEEEecCC
Confidence 355566777766677777777777654100 1100 0 111 12345667876 5654433 33
Q ss_pred CCcEEEEeCCCCeEEE-cccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463 151 YFGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT 229 (406)
Q Consensus 151 ~~gl~~~d~~~~~~~~-l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 229 (406)
.+.|..+..+++..+. +... ...+.=+..++.+.+.++-+ .+
T Consensus 127 sG~v~v~~~stg~~~~~~~~e-----~~dieWl~WHp~a~illAG~--------------------------------~D 169 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLDQE-----VEDIEWLKWHPRAHILLAGS--------------------------------TD 169 (399)
T ss_pred CccEEEEEcccCceEEEeecc-----cCceEEEEecccccEEEeec--------------------------------CC
Confidence 3446666665554332 2111 11122234566666666533 35
Q ss_pred CeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 230 GRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
|.++.|....+....+..+ -...+.=.+.|||+.++...+ .+.|.+++++
T Consensus 170 GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-dgti~~Wn~k 220 (399)
T KOG0296|consen 170 GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-DGTIIVWNPK 220 (399)
T ss_pred CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-CceEEEEecC
Confidence 7898888776433333333 222334457899998876655 5778888866
No 226
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=88.55 E-value=20 Score=33.04 Aligned_cols=160 Identities=16% Similarity=0.057 Sum_probs=85.7
Q ss_pred ccceecc--CcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEE
Q 015463 59 NSEIKFL--NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL 136 (406)
Q Consensus 59 ~~~~~~~--~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 136 (406)
+.|++.. |.--..+++.+|.+-..+.+|+.|..+..||-+.-+.++... .......+
T Consensus 41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k---------------------~~~~Vk~~ 99 (327)
T KOG0643|consen 41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK---------------------TNSPVKRV 99 (327)
T ss_pred CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee---------------------cCCeeEEE
Confidence 4455543 333345888888777779999999988888866212222110 01113466
Q ss_pred EEeCCCCcEEEEeCCC------cEEEEeCCCCe--------EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhh
Q 015463 137 RFDKKTGDLYIADAYF------GLMKVGPEGGL--------ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRR 202 (406)
Q Consensus 137 ~~d~~~g~L~Vad~~~------gl~~~d~~~~~--------~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~ 202 (406)
-|+. +|++.++...+ -|..+|..... +..+... -..++....++-|...++
T Consensus 100 ~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-----~skit~a~Wg~l~~~ii~--------- 164 (327)
T KOG0643|consen 100 DFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-----DSKITSALWGPLGETIIA--------- 164 (327)
T ss_pred eecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-----ccceeeeeecccCCEEEE---------
Confidence 7887 78876665432 14444433111 1111110 122334444444444443
Q ss_pred ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc--CCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 015463 203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 278 (406)
Q Consensus 203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~ 278 (406)
+..+|.|-+||..+|+..+-... -..-|.+++++|.. .+++.+....-..++
T Consensus 165 -----------------------Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 165 -----------------------GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVD 218 (327)
T ss_pred -----------------------ecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceeee
Confidence 33468899999998754333211 23457789999985 445544333333344
No 227
>PRK13616 lipoprotein LpqB; Provisional
Probab=88.00 E-value=37 Score=35.49 Aligned_cols=38 Identities=16% Similarity=-0.039 Sum_probs=23.1
Q ss_pred cccCCC-cceEEEecCCCEEEEEeCCCCeEEEEEeeCCC
Q 015463 246 LRNLQF-PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK 283 (406)
Q Consensus 246 ~~~~~~-~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~ 283 (406)
...+.. +..+++..|+..+...+.....++++.++|..
T Consensus 492 ~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 492 GPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred ecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc
Confidence 334443 35677887776443333334569999998753
No 228
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=87.89 E-value=17 Score=34.51 Aligned_cols=123 Identities=19% Similarity=0.294 Sum_probs=64.8
Q ss_pred eEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccC-------CcccccccceEEc----CCCCEEEEeCC-Cchh
Q 015463 134 LGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAE-------GVPLRFTNDLDID----DEGNVYFTDSS-TNYQ 200 (406)
Q Consensus 134 ~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~-------~~~~~~~~~l~~d----~dG~ly~t~~~-~~~~ 200 (406)
++|..+. +|+++|+... ..|+++++++|++.=...... +..+..-.+..+- .+++|-+=|-. ...
T Consensus 147 NsV~~~~-~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~- 224 (299)
T PF14269_consen 147 NSVDKDD-DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDF- 224 (299)
T ss_pred eeeeecC-CccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCC-
Confidence 4677776 7888887654 679999998887643222110 1112233333333 34444443321 000
Q ss_pred hhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcc--------eEEEecCCCEEEEEeCCCC
Q 015463 201 RRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPN--------GLSLSKDKSFFVFCEGSVG 272 (406)
Q Consensus 201 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~n--------gi~l~~d~~~l~v~~t~~~ 272 (406)
-......++++.+|+++.+.+.+......+. .+..-++|+ +++.+...+
T Consensus 225 ----------------------~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g 281 (299)
T PF14269_consen 225 ----------------------NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNG 281 (299)
T ss_pred ----------------------CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCc
Confidence 0003346889999999776655432210111 234445565 446666666
Q ss_pred eEEEEEeeC
Q 015463 273 RLHKYWLIG 281 (406)
Q Consensus 273 ~i~~~~~~g 281 (406)
++.-|+.+|
T Consensus 282 ~~~E~~~~G 290 (299)
T PF14269_consen 282 RISEFTPDG 290 (299)
T ss_pred eEEEECCCC
Confidence 676666443
No 229
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.84 E-value=8.2 Score=40.15 Aligned_cols=152 Identities=18% Similarity=0.127 Sum_probs=86.2
Q ss_pred cceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE-EE
Q 015463 71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YI 147 (406)
Q Consensus 71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L-~V 147 (406)
-.++++++|+..|++....+-+..|... .+...- ...+ .+....|+|++ .+.| -.
T Consensus 65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irsw--------------------Ka~H-e~Pvi~ma~~~-~g~LlAt 122 (775)
T KOG0319|consen 65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSW--------------------KAIH-EAPVITMAFDP-TGTLLAT 122 (775)
T ss_pred hheeeecCCccEEEEeeccceEEEEEcccchHhHhH--------------------hhcc-CCCeEEEEEcC-CCceEEe
Confidence 3567888888888888877766556544 111000 0001 23346899998 5533 34
Q ss_pred EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463 148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227 (406)
Q Consensus 148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 227 (406)
+++.+.+..+|.+.+..+......+| -+..+.+.++-+.|+--+ +.
T Consensus 123 ggaD~~v~VWdi~~~~~th~fkG~gG----vVssl~F~~~~~~~lL~s------------------------------g~ 168 (775)
T KOG0319|consen 123 GGADGRVKVWDIKNGYCTHSFKGHGG----VVSSLLFHPHWNRWLLAS------------------------------GA 168 (775)
T ss_pred ccccceEEEEEeeCCEEEEEecCCCc----eEEEEEeCCccchhheee------------------------------cC
Confidence 44446678888887776654433333 245566666544332221 34
Q ss_pred CCCeEEEEeCCCCeEE--EecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463 228 DTGRVLKYDPTTKQTT--VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 279 (406)
Q Consensus 228 ~~g~l~~~d~~t~~~~--~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~ 279 (406)
.++.+..||..++... .+........++++++|+..++... ...-+..+++
T Consensus 169 ~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~-RDkvi~vwd~ 221 (775)
T KOG0319|consen 169 TDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVG-RDKVIIVWDL 221 (775)
T ss_pred CCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEec-cCcEEEEeeh
Confidence 4678888998866541 1122234456899999977664443 2334555555
No 230
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=87.71 E-value=2.7 Score=26.87 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=20.2
Q ss_pred eEEEEeCCCCeEE-EecccCCCcceEEEec
Q 015463 231 RVLKYDPTTKQTT-VLLRNLQFPNGLSLSK 259 (406)
Q Consensus 231 ~l~~~d~~t~~~~-~~~~~~~~~ngi~l~~ 259 (406)
.+.+-+.++...+ .+.+.+..|+||++++
T Consensus 13 ~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 13 SIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 5666666655544 4457789999999864
No 231
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=87.49 E-value=23 Score=32.53 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=58.8
Q ss_pred CcceEEEcCC-CCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463 70 GPESMAFDPL-GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (406)
Q Consensus 70 gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va 148 (406)
..|.+++++. .+++.+.+.+..|.+|+...-+..... +.. +.-.-+...|+++.+.++
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i--------------------~~~-~eni~i~wsp~g~~~~~~ 124 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI--------------------ETK-GENINITWSPDGEYIAVG 124 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe--------------------ecc-CcceEEEEcCCCCEEEEe
Confidence 4577788864 445667777888888886522222111 111 112345677744555666
Q ss_pred eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463 149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS 196 (406)
Q Consensus 149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~ 196 (406)
+....|..+|..+.++.. . .....+.|.+....+++++|-+.+
T Consensus 125 ~kdD~it~id~r~~~~~~--~---~~~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 125 NKDDRITFIDARTYKIVN--E---EQFKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred cCcccEEEEEecccceee--h---hcccceeeeeeecCCCCEEEEecC
Confidence 655678888866543321 1 112346778888878888887753
No 232
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=87.32 E-value=38 Score=34.79 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=36.2
Q ss_pred cceEEEecCCCEEEEEe--CCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCC-CCEEEEEccC
Q 015463 252 PNGLSLSKDKSFFVFCE--GSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK-GEFWVAIHCR 315 (406)
Q Consensus 252 ~ngi~l~~d~~~l~v~~--t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~-G~lwv~~~~~ 315 (406)
.+.+.+..+|+++-.+. ..+.+|..+.++..+.. ..|....|.+..+.+-+. -.++|++...
T Consensus 524 i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ--~PF~kskG~vq~v~FHPs~p~lfVaTq~~ 588 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ--SPFRKSKGLVQRVKFHPSKPYLFVATQRS 588 (733)
T ss_pred cceeeeecCCceEEEeccCCCcceEEEEeccccccc--CchhhcCCceeEEEecCCCceEEEEeccc
Confidence 34567777887764442 23467888888733222 345444566666666443 3477877543
No 233
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.23 E-value=48 Score=35.86 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=20.2
Q ss_pred CCcEEEEeCCCcEEEEeCCCCeE
Q 015463 142 TGDLYIADAYFGLMKVGPEGGLA 164 (406)
Q Consensus 142 ~g~L~Vad~~~gl~~~d~~~~~~ 164 (406)
+|.||+++..+.|+.+|.++|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~ 216 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKE 216 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcE
Confidence 68999999888899999998864
No 234
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=87.17 E-value=26 Score=32.81 Aligned_cols=109 Identities=15% Similarity=0.059 Sum_probs=72.6
Q ss_pred ceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccc
Q 015463 133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQ 212 (406)
Q Consensus 133 p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~ 212 (406)
...|.|++..+.|.|+.+.+.|..|+......+.... .+.| +-+-++.++-.+|+++.
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~p---lL~c~F~d~~~~~~G~~----------------- 73 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAP---LLDCAFADESTIVTGGL----------------- 73 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCc---eeeeeccCCceEEEecc-----------------
Confidence 3467888767889999887777777765543322111 1222 22445555667888764
Q ss_pred ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+|.|.+||..++....+...-....+|..++ +...+++..+..+|..++..
T Consensus 74 ----------------dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 74 ----------------DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred ----------------CceEEEEEecCCcceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecc
Confidence 3789999999998877765555556777765 33466888888888888754
No 235
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.02 E-value=3.4 Score=44.86 Aligned_cols=204 Identities=16% Similarity=0.177 Sum_probs=95.5
Q ss_pred eEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCC
Q 015463 83 PYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEG 161 (406)
Q Consensus 83 ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~ 161 (406)
|-.|..||.|..|++..+ +.... .+... ......|...|+.|.+..+++..+.+. +.|+.+|...
T Consensus 83 IaGG~edG~I~ly~p~~~--~~~~~---~~~la---------~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn 148 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASI--IANAS---EEVLA---------TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNK 148 (1049)
T ss_pred eeccccCCceEEecchhh--ccCcc---hHHHh---------hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCC
Confidence 566788999999987632 00000 00000 001113667899999856666655444 4599999764
Q ss_pred CeEEEcccccCCcccccccceEEcCC-CCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC
Q 015463 162 GLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK 240 (406)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~ 240 (406)
-+ +.+... .......+..|...+. -.|+.+ +..+|+...+|.+.+
T Consensus 149 ~~-tP~~~~-~~~~~~eI~~lsWNrkvqhILAS--------------------------------~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 149 PE-TPFTPG-SQAPPSEIKCLSWNRKVSHILAS--------------------------------GSPSGRAVIWDLRKK 194 (1049)
T ss_pred cC-CCCCCC-CCCCcccceEeccchhhhHHhhc--------------------------------cCCCCCceeccccCC
Confidence 21 111100 0001112222222221 122222 334578888888754
Q ss_pred eE-EEeccc--CCCcceEEEecCCCEEEEEeCCCCe---EEEEEeeCCCCcceeeeecCCCCCCceE---EC-CCCCEEE
Q 015463 241 QT-TVLLRN--LQFPNGLSLSKDKSFFVFCEGSVGR---LHKYWLIGEKAGNLEAFAILPGYPDNVR---TN-EKGEFWV 310 (406)
Q Consensus 241 ~~-~~~~~~--~~~~ngi~l~~d~~~l~v~~t~~~~---i~~~~~~g~~~~~~~~~~~l~g~pd~i~---~d-~~G~lwv 310 (406)
+- ..+.+. -...+++++.||..+-+++.+...+ |..+++.-.. ...+++ .++-.||. .. .|-++.+
T Consensus 195 ~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-sP~k~~---~~H~~GilslsWc~~D~~lll 270 (1049)
T KOG0307|consen 195 KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-SPLKIL---EGHQRGILSLSWCPQDPRLLL 270 (1049)
T ss_pred CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-Cchhhh---cccccceeeeccCCCCchhhh
Confidence 22 122211 1335689999987765555554433 3333332110 111111 23333332 12 2224555
Q ss_pred EEccCCcchhhhhhcChhhhhhhhccCcccee
Q 015463 311 AIHCRRSLYSHLMALYPKIRHFLLKLPISAKT 342 (406)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (406)
+......++.+ .+..++++..+|....+
T Consensus 271 SsgkD~~ii~w----N~~tgEvl~~~p~~~nW 298 (1049)
T KOG0307|consen 271 SSGKDNRIICW----NPNTGEVLGELPAQGNW 298 (1049)
T ss_pred cccCCCCeeEe----cCCCceEeeecCCCCcc
Confidence 55444333222 45567777777775443
No 236
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=86.98 E-value=9.2 Score=36.39 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=32.1
Q ss_pred eEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 231 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 231 ~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
.+-.++..|.++.....+ .-.|||-..=...+.|+.+..+.|..+++.
T Consensus 341 TikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred eEEEEeccceeeehhhhc--ccccceehhccCeEEEecCCCceEEEEecc
Confidence 467778877776554433 335676555455678888887888888766
No 237
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=86.16 E-value=16 Score=36.57 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=68.1
Q ss_pred EEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463 135 GLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC 214 (406)
Q Consensus 135 gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~ 214 (406)
...+.++...|+|+.....|-++|......+.-.. ... .......|++.+|-++-|+..+
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTprikae-lts-sapaCyALa~spDakvcFsccs------------------ 529 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE-LTS-SAPACYALAISPDAKVCFSCCS------------------ 529 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcchhhh-cCC-cchhhhhhhcCCccceeeeecc------------------
Confidence 34455534568887666678888876543222111 111 1123566888899999998754
Q ss_pred ccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+|.|..||..+..+..-..+ -..+..|.+++||..|| +.--.+.|..+++.
T Consensus 530 --------------dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlr 581 (705)
T KOG0639|consen 530 --------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLR 581 (705)
T ss_pred --------------CCcEEEEEcccceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhh
Confidence 47899999886543332222 23467799999998765 43334677777765
No 238
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=85.89 E-value=21 Score=33.84 Aligned_cols=144 Identities=12% Similarity=0.106 Sum_probs=78.2
Q ss_pred CCcEEEEeCC-CcEEEEeCCCCeEEEcccccC-CcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463 142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAE-GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND 219 (406)
Q Consensus 142 ~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~-~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~ 219 (406)
+-+||.+++. .-|..+|.-+|+.+.-....+ -.......+|++.+||.-.|+-..
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk----------------------- 178 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK----------------------- 178 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-----------------------
Confidence 4567777665 458888887777653222111 112345668999999965554321
Q ss_pred CCCCcccCCCCeEEEEeC-CCCeE-EEe---ccc----CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeee
Q 015463 220 PSPIKITKDTGRVLKYDP-TTKQT-TVL---LRN----LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF 290 (406)
Q Consensus 220 ~~~~~~~~~~g~l~~~d~-~t~~~-~~~---~~~----~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~ 290 (406)
..|..||. ..|+. .++ ..+ ...-..++++|-....+...+..+++-.|.-.+. +..
T Consensus 179 ----------rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-----~pl 243 (406)
T KOG2919|consen 179 ----------RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-----RPL 243 (406)
T ss_pred ----------ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-----Cce
Confidence 23555554 22322 111 111 1112356788876667777777788888875532 122
Q ss_pred ecCCCCCCce---EECCCCC-EEEEEccCCcchhhhh
Q 015463 291 AILPGYPDNV---RTNEKGE-FWVAIHCRRSLYSHLM 323 (406)
Q Consensus 291 ~~l~g~pd~i---~~d~~G~-lwv~~~~~~~~~~~~~ 323 (406)
.-+.|.-.|| ..-++|+ ||.+....-.+..+.|
T Consensus 244 ~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 244 QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred eeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 2222334444 4567777 7777665544444433
No 239
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=85.52 E-value=14 Score=35.83 Aligned_cols=179 Identities=16% Similarity=0.235 Sum_probs=98.7
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCCc--eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad 149 (406)
-.+.+.++|+.|.+|+..|..-.|+... ++.+. .++ ..-.-++.... +|+-.|..
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtil---------------------QaH-Ds~Vr~m~ws~-~g~wmiSg 156 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETIL---------------------QAH-DSPVRTMKWSH-NGTWMISG 156 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHHh---------------------hhh-cccceeEEEcc-CCCEEEEc
Confidence 5677889999999999999888887641 11111 111 12234677777 56554544
Q ss_pred CCCcEE-EEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463 150 AYFGLM-KVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD 228 (406)
Q Consensus 150 ~~~gl~-~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 228 (406)
..+|.. .+++.-..++.+. ...-..+.++++.++...++|.+.
T Consensus 157 D~gG~iKyWqpnmnnVk~~~----ahh~eaIRdlafSpnDskF~t~Sd-------------------------------- 200 (464)
T KOG0284|consen 157 DKGGMIKYWQPNMNNVKIIQ----AHHAEAIRDLAFSPNDSKFLTCSD-------------------------------- 200 (464)
T ss_pred CCCceEEecccchhhhHHhh----HhhhhhhheeccCCCCceeEEecC--------------------------------
Confidence 344544 3455433222221 111235778999988888887653
Q ss_pred CCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCC---CceEECC
Q 015463 229 TGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP---DNVRTNE 304 (406)
Q Consensus 229 ~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~p---d~i~~d~ 304 (406)
+|.+..+|..-.+-+..+.+ ...+..+++.|.. .++++....+-|..++. +.++ .+..+.+.- -.+.+.+
T Consensus 201 Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDp---rSg~--cl~tlh~HKntVl~~~f~~ 274 (464)
T KOG0284|consen 201 DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDP---RSGS--CLATLHGHKNTVLAVKFNP 274 (464)
T ss_pred CCeEEEEeccCCchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecC---CCcc--hhhhhhhccceEEEEEEcC
Confidence 46777777654433333332 3445678888855 46566554454444443 3332 222232322 2355678
Q ss_pred CCCEEEEEccC
Q 015463 305 KGEFWVAIHCR 315 (406)
Q Consensus 305 ~G~lwv~~~~~ 315 (406)
+|++.++....
T Consensus 275 n~N~Llt~skD 285 (464)
T KOG0284|consen 275 NGNWLLTGSKD 285 (464)
T ss_pred CCCeeEEccCC
Confidence 88766665443
No 240
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.51 E-value=21 Score=34.63 Aligned_cols=71 Identities=23% Similarity=0.347 Sum_probs=43.0
Q ss_pred cccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc--CCCcc
Q 015463 176 LRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN--LQFPN 253 (406)
Q Consensus 176 ~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~~n 253 (406)
++.+.+++++.||++..-.+ -+|.|..|+..+-+.-.+... ..+..
T Consensus 281 ~~siSsl~VS~dGkf~AlGT--------------------------------~dGsVai~~~~~lq~~~~vk~aH~~~VT 328 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGT--------------------------------MDGSVAIYDAKSLQRLQYVKEAHLGFVT 328 (398)
T ss_pred cCcceeEEEcCCCcEEEEec--------------------------------cCCcEEEEEeceeeeeEeehhhheeeee
Confidence 45688999999998655332 147788888765554444322 22557
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463 254 GLSLSKDKSFFVFCEGSVGRLHKYWL 279 (406)
Q Consensus 254 gi~l~~d~~~l~v~~t~~~~i~~~~~ 279 (406)
+++++||.+.+. +-....+.....+
T Consensus 329 ~ltF~Pdsr~~~-svSs~~~~~v~~l 353 (398)
T KOG0771|consen 329 GLTFSPDSRYLA-SVSSDNEAAVTKL 353 (398)
T ss_pred eEEEcCCcCccc-ccccCCceeEEEE
Confidence 899999987542 2233344444443
No 241
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=85.16 E-value=9.4 Score=34.46 Aligned_cols=168 Identities=15% Similarity=0.031 Sum_probs=75.5
Q ss_pred ccccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCc-CCcc
Q 015463 57 LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHI-CGRP 133 (406)
Q Consensus 57 l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p 133 (406)
+..+..+-. ...+=..|+..++|. +|.-. ++.+++..+. ......... . .+... =++=
T Consensus 23 ~~~a~~iG~-gw~~~~~i~~~P~g~-lY~I~-~~~lY~~~~~~~~~~~~~~~~----~------------~Ig~g~W~~F 83 (229)
T PF14517_consen 23 SDRAITIGS-GWNNFRDIAAGPNGR-LYAIR-NDGLYRGSPSSSGGNTWDSGS----K------------QIGDGGWNSF 83 (229)
T ss_dssp HHHSEEEES-S-TT-SEEEE-TTS--EEEEE-TTEEEEES---STT--HHHH-----E------------EEE-S-GGG-
T ss_pred cchhhhcCc-cccccceEEEcCCce-EEEEE-CCceEEecCCccCcccccccC----c------------ccccCcccce
Confidence 445555544 245566788888887 56544 4578877322 100000000 0 00000 0122
Q ss_pred eEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEccc----ccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccc
Q 015463 134 LGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLAT----EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENI 209 (406)
Q Consensus 134 ~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~----~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~ 209 (406)
..|.+++ +|.||..+....|++..+.+..-..... ...+.--+....|..+++|.||.-+..
T Consensus 84 ~~i~~d~-~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~d------------- 149 (229)
T PF14517_consen 84 KFIFFDP-TGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPD------------- 149 (229)
T ss_dssp SEEEE-T-TS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETT-------------
T ss_pred eEEEecC-CccEEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCC-------------
Confidence 3688898 8999988877678888764332222211 111122334566888999999988753
Q ss_pred cccccccCCCCCCCcccCCCCeEEEE-eCCCCeE-----EEe--cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463 210 PLQLCSSLNDPSPIKITKDTGRVLKY-DPTTKQT-----TVL--LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 279 (406)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~g~l~~~-d~~t~~~-----~~~--~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~ 279 (406)
|++++. .|..+.- ..+ ..+-....-|..++++. ||.+ ..++.|+|+..
T Consensus 150 --------------------g~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V-~~~G~lyr~~~ 205 (229)
T PF14517_consen 150 --------------------GRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAV-KSNGKLYRGRP 205 (229)
T ss_dssp --------------------E-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES-
T ss_pred --------------------CceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCc-EEEE-ecCCEEeccCC
Confidence 567776 4443211 111 12222344577778775 5555 34678887653
No 242
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=85.14 E-value=37 Score=32.66 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=45.0
Q ss_pred CeEEEEeCCCCeEEEeccc-CCCcceE-EEecCCCEEEEE---eCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECC
Q 015463 230 GRVLKYDPTTKQTTVLLRN-LQFPNGL-SLSKDKSFFVFC---EGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE 304 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~~~~-~~~~ngi-~l~~d~~~l~v~---~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~ 304 (406)
..+|.||.++-+.-.-.+. -..+.|+ |+++.....|++ .++.+.|..|+...- .....+.-=.|--.-+++++
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I~aH~~~lAalafs~ 183 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTINAHKGPLAALAFSP 183 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEEEecCCceeEEEECC
Confidence 4599999976543222222 2456654 577766544443 334577888886532 11111111112234567889
Q ss_pred CCCEEEEEccC
Q 015463 305 KGEFWVAIHCR 315 (406)
Q Consensus 305 ~G~lwv~~~~~ 315 (406)
+|++.++....
T Consensus 184 ~G~llATASeK 194 (391)
T KOG2110|consen 184 DGTLLATASEK 194 (391)
T ss_pred CCCEEEEeccC
Confidence 99877665433
No 243
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=85.06 E-value=45 Score=33.51 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=50.9
Q ss_pred CCeEEEEeCCCCeEEEe-cccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCC
Q 015463 229 TGRVLKYDPTTKQTTVL-LRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG 306 (406)
Q Consensus 229 ~g~l~~~d~~t~~~~~~-~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G 306 (406)
.|.|-.||..+.....- .... .-..||+++|.+..|+++--...+|+.|+....+... .+..+-| -..+++.++|
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~-~l~y~~P--lstvaf~~~G 262 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD-RLTYSHP--LSTVAFSECG 262 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc-eeeecCC--cceeeecCCc
Confidence 57788888764332211 1222 2346999999999999987777899999976322222 2211111 2356778888
Q ss_pred CEEEEEcc
Q 015463 307 EFWVAIHC 314 (406)
Q Consensus 307 ~lwv~~~~ 314 (406)
.+.++...
T Consensus 263 ~~L~aG~s 270 (673)
T KOG4378|consen 263 TYLCAGNS 270 (673)
T ss_pred eEEEeecC
Confidence 86666543
No 244
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=85.03 E-value=39 Score=33.87 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=35.4
Q ss_pred CCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463 229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 282 (406)
Q Consensus 229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~ 282 (406)
+.+|+.||...++...-+..-.--..++++++|-+ +++.+.+++|+.|++.+.
T Consensus 230 Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~-L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTY-LCAGNSKGELIAYDMRST 282 (673)
T ss_pred cceEEEeecccccccceeeecCCcceeeecCCceE-EEeecCCceEEEEecccC
Confidence 35799999875543221111122246899998864 567788999999999864
No 245
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=85.03 E-value=31 Score=31.67 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=52.5
Q ss_pred cEEEEeCCCCeEEEcccc--cCCcccccccceEEcC--C-CCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463 153 GLMKVGPEGGLATSLATE--AEGVPLRFTNDLDIDD--E-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227 (406)
Q Consensus 153 gl~~~d~~~~~~~~l~~~--~~~~~~~~~~~l~~d~--d-G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 227 (406)
-+|.+|++.+.++.+... ......+.+.+++..+ . |.+|+-...
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~------------------------------- 175 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNR------------------------------- 175 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEec-------------------------------
Confidence 378899988777766543 2233455677776543 2 656654321
Q ss_pred CCCeEEEE---eCCCCeEE-EecccCC---CcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 228 DTGRVLKY---DPTTKQTT-VLLRNLQ---FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 228 ~~g~l~~~---d~~t~~~~-~~~~~~~---~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
..|-+-.| |...|++. .+.+.+. ...|+..+..-.+||++|. .-.||+|..+
T Consensus 176 ~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeE-dvaiWK~~Ae 234 (364)
T COG4247 176 RQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEE-DVAIWKYEAE 234 (364)
T ss_pred CCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeec-cceeeecccC
Confidence 11222222 22223221 1122222 3457766666667999886 4789999876
No 246
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=84.96 E-value=13 Score=36.10 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=26.0
Q ss_pred cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC
Q 015463 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL 98 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~ 98 (406)
-+.-.-+-.+++.++++.+.+++.+..++.||..
T Consensus 120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~ 153 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH 153 (434)
T ss_pred cccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence 3344556778898999878888888888888866
No 247
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=84.93 E-value=34 Score=32.08 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=52.8
Q ss_pred cceEEEcC-CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463 71 PESMAFDP-LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (406)
Q Consensus 71 pe~i~~d~-~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va 148 (406)
..+++++| ..+++-+|++||.|..|+-. .-.... . ......+.++.+++..+...++.+
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-k------------------a~~~~~~PvL~v~WsddgskVf~g 90 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-K------------------AQQSHDGPVLDVCWSDDGSKVFSG 90 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccc-h------------------hhhccCCCeEEEEEccCCceEEee
Confidence 35677777 45545589999998888643 100000 0 112224557899998744457888
Q ss_pred eCCCcEEEEeCCCCeEEEccc
Q 015463 149 DAYFGLMKVGPEGGLATSLAT 169 (406)
Q Consensus 149 d~~~gl~~~d~~~~~~~~l~~ 169 (406)
...+.+-.+|..+++...+..
T Consensus 91 ~~Dk~~k~wDL~S~Q~~~v~~ 111 (347)
T KOG0647|consen 91 GCDKQAKLWDLASGQVSQVAA 111 (347)
T ss_pred ccCCceEEEEccCCCeeeeee
Confidence 888889999999998776643
No 248
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=84.92 E-value=34 Score=32.07 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=84.3
Q ss_pred cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcc-eEEEEeCCCCcEEE
Q 015463 69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYI 147 (406)
Q Consensus 69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~d~~~g~L~V 147 (406)
.+-.++-+++.++.|.++++||.+..++..... . ..+...+.| +..+|.. +..+|+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~-l---------------------~~~~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS-L---------------------KLKFKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchh-h---------------------hhheecCCceeeeeccC-CceEEE
Confidence 345677777766668999999998888765110 0 000011223 4667775 678999
Q ss_pred EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463 148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227 (406)
Q Consensus 148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 227 (406)
++..+.|.++|..++....+.+...+ +.+|.....-+..++.+ |
T Consensus 71 G~~dg~vr~~Dln~~~~~~igth~~~-----i~ci~~~~~~~~vIsgs--------W----------------------- 114 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQIGTHDEG-----IRCIEYSYEVGCVISGS--------W----------------------- 114 (323)
T ss_pred eccCceEEEEEecCCcceeeccCCCc-----eEEEEeeccCCeEEEcc--------c-----------------------
Confidence 99888899999998876555433221 23333333222333332 1
Q ss_pred CCCeEEEEeCCCCeEEEecccCCCcc-eEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 228 DTGRVLKYDPTTKQTTVLLRNLQFPN-GLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 228 ~~g~l~~~d~~t~~~~~~~~~~~~~n-gi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
++.+-.+|+.... .......++ --+++-.++.|+|. +...++..|++.
T Consensus 115 -D~~ik~wD~R~~~---~~~~~d~~kkVy~~~v~g~~LvVg-~~~r~v~iyDLR 163 (323)
T KOG1036|consen 115 -DKTIKFWDPRNKV---VVGTFDQGKKVYCMDVSGNRLVVG-TSDRKVLIYDLR 163 (323)
T ss_pred -CccEEEEeccccc---cccccccCceEEEEeccCCEEEEe-ecCceEEEEEcc
Confidence 3567777876421 111111222 12344456666664 446788888876
No 249
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=84.86 E-value=10 Score=37.87 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=31.3
Q ss_pred eccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC
Q 015463 63 KFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL 98 (406)
Q Consensus 63 ~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~ 98 (406)
-+.|.-.|..+|.+.++|..||+|.-|..+..||..
T Consensus 546 qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlr 581 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR 581 (705)
T ss_pred cccCCCCCceeEEecCCCceeecCCCccceeehhhh
Confidence 345666788999999999999999999999999876
No 250
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.75 E-value=4.5 Score=25.23 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=20.2
Q ss_pred CCeEEEEeCCCCeEEEecccCCCcceEEEe
Q 015463 229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLS 258 (406)
Q Consensus 229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~ 258 (406)
.+.|..+|+.+++...-..-...|.+++++
T Consensus 13 ~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 367999999887665444444667777653
No 251
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=84.71 E-value=43 Score=33.02 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=59.9
Q ss_pred EEEEeCCCCc-EEEE-eCCC----cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCE-EEEeCCCchhhhccccc
Q 015463 135 GLRFDKKTGD-LYIA-DAYF----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV-YFTDSSTNYQRRQMQKE 207 (406)
Q Consensus 135 gi~~d~~~g~-L~Va-d~~~----gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~l-y~t~~~~~~~~~~~~~~ 207 (406)
++.+++ +|+ +.++ +..+ .|+.+|.++|+... ..... .....+...+||+. |.+...... +..
T Consensus 128 ~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~-~~~---- 196 (414)
T PF02897_consen 128 GFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--DGIEN---PKFSSVSWSDDGKGFFYTRFDEDQ-RTS---- 196 (414)
T ss_dssp EEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEE--EEEEE---EESEEEEECTTSSEEEEEECSTTT-SS-----
T ss_pred eeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcC--Ccccc---cccceEEEeCCCCEEEEEEeCccc-ccc----
Confidence 466777 555 3333 2222 38899998885432 22111 11223788888754 344322100 000
Q ss_pred cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEE--EecccCCC---cceEEEecCCCEEEEEeCCC---CeEEEEEe
Q 015463 208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTT--VLLRNLQF---PNGLSLSKDKSFFVFCEGSV---GRLHKYWL 279 (406)
Q Consensus 208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~--~~~~~~~~---~ngi~l~~d~~~l~v~~t~~---~~i~~~~~ 279 (406)
+ ....-.|+++...+...+ .+.+.... .-++..++|++++++..... ..++.+++
T Consensus 197 --------~---------~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~ 259 (414)
T PF02897_consen 197 --------D---------SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL 259 (414)
T ss_dssp --------C---------CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred --------c---------CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence 0 001235888887766433 33322222 33678899999988764432 45777776
Q ss_pred eC
Q 015463 280 IG 281 (406)
Q Consensus 280 ~g 281 (406)
..
T Consensus 260 ~~ 261 (414)
T PF02897_consen 260 DD 261 (414)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 252
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=84.09 E-value=25 Score=32.86 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=74.4
Q ss_pred cCCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccc
Q 015463 129 ICGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKE 207 (406)
Q Consensus 129 ~~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~ 207 (406)
..|..+-+.|+| +|..++.... +.|+.++..+. .+.+... .+ -...+.++...+||+..++.+.
T Consensus 46 h~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~l-kg-HsgAVM~l~~~~d~s~i~S~gt----------- 110 (338)
T KOG0265|consen 46 HKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGD-CENFWVL-KG-HSGAVMELHGMRDGSHILSCGT----------- 110 (338)
T ss_pred CcceEEEEEECC-CCCeEeecCCcceEEEEecccc-ccceeee-cc-ccceeEeeeeccCCCEEEEecC-----------
Confidence 356678889999 8887776544 56777775433 2222111 01 1134678888899988887653
Q ss_pred cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+-++..+|.++|+...-. ..-.+.|.++-+.-|-.++.+....+.+..++..
T Consensus 111 ---------------------Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 111 ---------------------DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred ---------------------CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 357999999999765433 2334556666555566677776666777777765
No 253
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.93 E-value=6.4 Score=24.50 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=27.3
Q ss_pred cCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEEC
Q 015463 259 KDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 303 (406)
Q Consensus 259 ~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d 303 (406)
||++.+|+++...+.|..++... +...........|.+++++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~---~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT---NKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC---CeEEEEEECCCCCceEEeC
Confidence 57889999998889999988642 2211122334457777653
No 254
>PHA03098 kelch-like protein; Provisional
Probab=83.82 E-value=55 Score=33.58 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=42.5
Q ss_pred CCcEEEEeCC-------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463 142 TGDLYIADAY-------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC 214 (406)
Q Consensus 142 ~g~L~Vad~~-------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~ 214 (406)
++.+||.... +.+.++|+.+++.+.+...... . .-.. ++.-+|.||+.........
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~--r-~~~~-~~~~~~~iyv~GG~~~~~~------------- 451 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS--H-YGGC-AIYHDGKIYVIGGISYIDN------------- 451 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc--c-cCce-EEEECCEEEEECCccCCCC-------------
Confidence 6788886431 2488999998877654322111 1 1112 2233678888653210000
Q ss_pred ccCCCCCCCcccCCCCeEEEEeCCCCeEEEec
Q 015463 215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL 246 (406)
Q Consensus 215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~ 246 (406)
......+++||+.+++++.+.
T Consensus 452 -----------~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 452 -----------IKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred -----------CcccceEEEecCCCCceeeCC
Confidence 001134999999998887654
No 255
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=83.61 E-value=40 Score=32.47 Aligned_cols=111 Identities=18% Similarity=0.206 Sum_probs=62.5
Q ss_pred ceEE-EEeCCCCcEEEEeCC----CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccc
Q 015463 133 PLGL-RFDKKTGDLYIADAY----FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKE 207 (406)
Q Consensus 133 p~gi-~~d~~~g~L~Vad~~----~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~ 207 (406)
|.|+ ++.+..++-|+|-.. +-|+.+|..+=+-........ ..+..|+++++|++..|.+.
T Consensus 129 ~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~----~~lAalafs~~G~llATASe----------- 193 (391)
T KOG2110|consen 129 PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHK----GPLAALAFSPDGTLLATASE----------- 193 (391)
T ss_pred ccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecC----CceeEEEECCCCCEEEEecc-----------
Confidence 4443 455534455555332 347777765322111111111 23567999999999888754
Q ss_pred cccccccccCCCCCCCcccCCCCeEEE-EeCCCCe-EEEecccCCCc--ceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 208 NIPLQLCSSLNDPSPIKITKDTGRVLK-YDPTTKQ-TTVLLRNLQFP--NGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~-~d~~t~~-~~~~~~~~~~~--ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
.|.|.| |...+|+ +..+..+.... ..+++++|+++|-++ .....|+.+.++
T Consensus 194 ---------------------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s-S~TeTVHiFKL~ 248 (391)
T KOG2110|consen 194 ---------------------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS-SNTETVHIFKLE 248 (391)
T ss_pred ---------------------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe-cCCCeEEEEEec
Confidence 355544 3434443 34444444322 368899999977665 445788888776
No 256
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=83.47 E-value=49 Score=32.74 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=61.9
Q ss_pred CCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCC-----cccc---cccceEEcCCCCEEEEeCCCchhh
Q 015463 130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEG-----VPLR---FTNDLDIDDEGNVYFTDSSTNYQR 201 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~-----~~~~---~~~~l~~d~dG~ly~t~~~~~~~~ 201 (406)
++.+-.++|-. +..+..+...+.|+.++....+.........+ .+.+ .+++|++-+.-++..+.+.+
T Consensus 327 ~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~---- 401 (479)
T KOG0299|consen 327 EGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS---- 401 (479)
T ss_pred CCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC----
Confidence 34556666664 45566665555577777654432111111111 1111 56667766655666654421
Q ss_pred hccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec--ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463 202 RQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 279 (406)
Q Consensus 202 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~ 279 (406)
+.=+|+.....-.++..+. .-..+.|.++++.+++++++.---..|+-|++.
T Consensus 402 --------------------------G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 402 --------------------------GCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred --------------------------CceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 1123454444322333331 122456899999999988776444456666654
No 257
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=83.37 E-value=40 Score=31.67 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=62.6
Q ss_pred eEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCccc-ccccceEEcCCCCEEEEeCCCchhhhcccccccccc
Q 015463 134 LGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPL-RFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQ 212 (406)
Q Consensus 134 ~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~-~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~ 212 (406)
..+.+. +...|+++...||..+|..+-...++.... +. ....++.+. -.-.|+++..
T Consensus 90 ~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~l---nt~gyaygv~vs-Gn~aYVadld---------------- 147 (370)
T COG5276 90 ADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFL---NTDGYAYGVYVS-GNYAYVADLD---------------- 147 (370)
T ss_pred heeEec--ccEEEEEcCCCceEEEeccCCCCcceeccc---cCCceEEEEEec-CCEEEEeecc----------------
Confidence 345555 568999999999999997764322221110 11 223334443 1257888743
Q ss_pred ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCc----ceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463 213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP----NGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 282 (406)
Q Consensus 213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~----ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~ 282 (406)
.+++.+|..+-+.-++......+ .-+++| |++-|++.. .+++...++..+
T Consensus 148 -----------------dgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~-d~GL~ivDVSnp 201 (370)
T COG5276 148 -----------------DGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWR-DGGLTIVDVSNP 201 (370)
T ss_pred -----------------CcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEe-CCCeEEEEccCC
Confidence 34777877655444443333333 345665 777888854 578888888754
No 258
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=83.28 E-value=51 Score=32.80 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=35.1
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcc--eeeee---------------cCCCCCCceEECCCCC-EEEEEc
Q 015463 253 NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN--LEAFA---------------ILPGYPDNVRTNEKGE-FWVAIH 313 (406)
Q Consensus 253 ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~--~~~~~---------------~l~g~pd~i~~d~~G~-lwv~~~ 313 (406)
.-|.+|-|.++||++....+.|..|++..+...+ .+++. .+.|-|.-+.++-||+ +||++.
T Consensus 315 tDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp --EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 4678999999999999999999999998753221 11221 1345577888888997 999874
No 259
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=82.91 E-value=31 Score=32.75 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=81.8
Q ss_pred cccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ce-eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463 67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT 142 (406)
Q Consensus 67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~ 142 (406)
.+.+..|+++.+||..||+|- +.-|..++.. .. ..++.... ..+...+-...+++.|.+
T Consensus 157 e~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~----------------~k~gq~giisc~a~sP~~ 219 (406)
T KOG2919|consen 157 EYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK----------------GKFGQKGIISCFAFSPMD 219 (406)
T ss_pred hhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhc----------------ccccccceeeeeeccCCC
Confidence 567889999999999888875 3457667652 11 11110000 000111223346677633
Q ss_pred -CcEEEEeCCC--cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463 143 -GDLYIADAYF--GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND 219 (406)
Q Consensus 143 -g~L~Vad~~~--gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~ 219 (406)
+.+-++...+ ||+.-+.. +-...+.. ....+..|...++|+-+|+.+
T Consensus 220 ~~~~a~gsY~q~~giy~~~~~-~pl~llgg-----h~gGvThL~~~edGn~lfsGa------------------------ 269 (406)
T KOG2919|consen 220 SKTLAVGSYGQRVGIYNDDGR-RPLQLLGG-----HGGGVTHLQWCEDGNKLFSGA------------------------ 269 (406)
T ss_pred CcceeeecccceeeeEecCCC-Cceeeecc-----cCCCeeeEEeccCcCeecccc------------------------
Confidence 3556666554 55555432 11222221 123567888899997555432
Q ss_pred CCCCcccCCCCeEEEEeCCCCeEEEe-c-ccCCCcc-eE--EEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463 220 PSPIKITKDTGRVLKYDPTTKQTTVL-L-RNLQFPN-GL--SLSKDKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 220 ~~~~~~~~~~g~l~~~d~~t~~~~~~-~-~~~~~~n-gi--~l~~d~~~l~v~~t~~~~i~~~~~~g 281 (406)
+..-.|+++|...-.--++ + ......| -| .++|++++| .+....+.|.++++++
T Consensus 270 -------Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~L-asG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 270 -------RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEIL-ASGDTDGSVRVWDLKD 328 (406)
T ss_pred -------cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCcee-eccCCCccEEEEecCC
Confidence 1134588888752211111 1 1111122 23 345667654 5554567888888764
No 260
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=82.90 E-value=47 Score=32.48 Aligned_cols=87 Identities=18% Similarity=0.121 Sum_probs=46.6
Q ss_pred CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCC-----CceEECC
Q 015463 230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP-----DNVRTNE 304 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~p-----d~i~~d~ 304 (406)
+.|-.||..+.....-.........+.++.++..++.+ +-...+..+++.+.. -...|. -+|+- .-+.+++
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~e--I~~~~s-A~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKE--IRQTFS-AEGFKCASDWTRVVFSP 397 (459)
T ss_pred cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeeccccc--EEEEee-ccccccccccceeEECC
Confidence 45777775555444333333345567788888887776 445677777765321 111221 12221 1245677
Q ss_pred CCCEEEEEccCCcchh
Q 015463 305 KGEFWVAIHCRRSLYS 320 (406)
Q Consensus 305 ~G~lwv~~~~~~~~~~ 320 (406)
+|.+-.+....+.++.
T Consensus 398 d~~YvaAGS~dgsv~i 413 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYI 413 (459)
T ss_pred CCceeeeccCCCcEEE
Confidence 7776555554444443
No 261
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=82.40 E-value=3.8 Score=25.57 Aligned_cols=36 Identities=14% Similarity=-0.037 Sum_probs=27.1
Q ss_pred eccCcccCcceEEEcCCCC-eeEEEecCCEEEEEeCC
Q 015463 63 KFLNQIQGPESMAFDPLGR-GPYTGVADGRILFWDGL 98 (406)
Q Consensus 63 ~~~~~~~gpe~i~~d~~g~-~ly~g~~~g~I~~~~~~ 98 (406)
+...++..|.++++|+.++ ++|+....+.|.+.+.+
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~ 39 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLD 39 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence 4455788999999998755 56778877888777643
No 262
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=82.27 E-value=68 Score=33.52 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=39.9
Q ss_pred ceEEEEeCCCCcEEEEeCCCcEEEEeCCCCe-EEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463 133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS 196 (406)
Q Consensus 133 p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~-~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~ 196 (406)
.+.++|.| +|.-.+-.+++.++.+|+..|. +.++... ...++.++..+||..+.+.++
T Consensus 15 i~d~afkP-DGsqL~lAAg~rlliyD~ndG~llqtLKgH-----KDtVycVAys~dGkrFASG~a 73 (1081)
T KOG1538|consen 15 INDIAFKP-DGTQLILAAGSRLLVYDTSDGTLLQPLKGH-----KDTVYCVAYAKDGKRFASGSA 73 (1081)
T ss_pred hheeEECC-CCceEEEecCCEEEEEeCCCcccccccccc-----cceEEEEEEccCCceeccCCC
Confidence 56789999 6654444467899999987663 2333211 235788999999999887654
No 263
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=82.15 E-value=37 Score=30.42 Aligned_cols=29 Identities=7% Similarity=0.068 Sum_probs=22.1
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463 253 NGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 282 (406)
Q Consensus 253 ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~ 282 (406)
..++++|.|+ |+++.........|++.|.
T Consensus 235 aav~vdpsgr-ll~sg~~dssc~lydirg~ 263 (350)
T KOG0641|consen 235 AAVAVDPSGR-LLASGHADSSCMLYDIRGG 263 (350)
T ss_pred EEEEECCCcc-eeeeccCCCceEEEEeeCC
Confidence 3578888886 6677776778889998864
No 264
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=82.08 E-value=4.3 Score=25.93 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=28.5
Q ss_pred EEEEEeCCCC-eEEEEEeeCCCCcceeeeecCCCCCCceEEC
Q 015463 263 FFVFCEGSVG-RLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 303 (406)
Q Consensus 263 ~l~v~~t~~~-~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d 303 (406)
.+||++.... .|.+.+++|.. ...++.+.-..|.+|++|
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~--~~~vi~~~l~~P~giaVD 41 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN--RRTVISDDLQHPEGIAVD 41 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS--EEEEEESSTSSEEEEEEE
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCCCcCEEEEC
Confidence 5899999999 99999988743 333444444569999887
No 265
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=82.02 E-value=34 Score=34.01 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=32.5
Q ss_pred ccccccceeccCcc--cCcceEEEcCCCCeeEEEecCCEEEEEeCC
Q 015463 55 NLLQNSEIKFLNQI--QGPESMAFDPLGRGPYTGVADGRILFWDGL 98 (406)
Q Consensus 55 ~~l~~~~~~~~~~~--~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~ 98 (406)
-.+..++.-+.-.+ +||-.+-...+|+.+.+|...|.|.-+|..
T Consensus 114 Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~ 159 (545)
T KOG1272|consen 114 VDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWV 159 (545)
T ss_pred ccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecc
Confidence 33444444443333 799999999999989999999999888865
No 266
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=81.90 E-value=32 Score=31.31 Aligned_cols=108 Identities=17% Similarity=0.266 Sum_probs=63.9
Q ss_pred ceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEE-cCCCCEEEEeCCCchhhhccccccccc
Q 015463 133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI-DDEGNVYFTDSSTNYQRRQMQKENIPL 211 (406)
Q Consensus 133 p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~-d~dG~ly~t~~~~~~~~~~~~~~~~~~ 211 (406)
.+.|-+||..+.++.|..+.-++.+|.++|+++...... -.++..++- .+++.|.-
T Consensus 117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGH----tDYvH~vv~R~~~~qils------------------- 173 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGH----TDYVHSVVGRNANGQILS------------------- 173 (325)
T ss_pred cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCC----cceeeeeeecccCcceee-------------------
Confidence 467889986788888875566999999999887543221 123444443 33444433
Q ss_pred cccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCc------ce---EEEecCCCEEEEEeCCCCeEEEEEe
Q 015463 212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP------NG---LSLSKDKSFFVFCEGSVGRLHKYWL 279 (406)
Q Consensus 212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~------ng---i~l~~d~~~l~v~~t~~~~i~~~~~ 279 (406)
+..+|.+..+|.+|++-....+....+ +| .|++-+++.++ +.. +..+..+++
T Consensus 174 --------------G~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlv-CGg-Gp~lslwhL 234 (325)
T KOG0649|consen 174 --------------GAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLV-CGG-GPKLSLWHL 234 (325)
T ss_pred --------------cCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEE-ecC-CCceeEEec
Confidence 445688888999888755544332222 22 45666676554 332 234444444
No 267
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.37 E-value=42 Score=30.47 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=54.2
Q ss_pred CcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463 143 GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP 222 (406)
Q Consensus 143 g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 222 (406)
..+..+...+.+..||...|.... ..-|. -++++.+.+||+.-...+-
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~s---Dy~g~---pit~vs~s~d~nc~La~~l-------------------------- 203 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSS---DYFGH---PITSVSFSKDGNCSLASSL-------------------------- 203 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeeh---hhcCC---cceeEEecCCCCEEEEeec--------------------------
Confidence 344444444567788877664321 11122 3678899999986665431
Q ss_pred CcccCCCCeEEEEeCCCCeEEEecccCCCc---ceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463 223 IKITKDTGRVLKYDPTTKQTTVLLRNLQFP---NGLSLSKDKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~---ngi~l~~d~~~l~v~~t~~~~i~~~~~~g 281 (406)
++.|..+|.+||++-..-.+.... --.++.. .....++.+..+.++.|++..
T Consensus 204 ------~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q-sdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 204 ------DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred ------cceeeecccchhHHHHHhcccccceeeeeeeecc-cceeEEeccCCceEEEEEecc
Confidence 245666788877643222222111 1233332 334556666667788887753
No 268
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=81.35 E-value=23 Score=34.21 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=56.8
Q ss_pred CcEEEEeCC--CcEEEEeCCCCeEEEcccccCCcccccccc-eEEcCC-CCEEEEeCCCchhhhccccccccccccccCC
Q 015463 143 GDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTND-LDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLN 218 (406)
Q Consensus 143 g~L~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~-l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~ 218 (406)
+-||+.... ..|+.++.+++..+.+.... . .+.. +.+|.+ +.|||+....
T Consensus 249 ~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~----~-~V~~i~~~d~~~~~iyf~a~~~--------------------- 302 (353)
T PF00930_consen 249 EFLWISERDGYRHLYLYDLDGGKPRQLTSGD----W-EVTSILGWDEDNNRIYFTANGD--------------------- 302 (353)
T ss_dssp EEEEEEETTSSEEEEEEETTSSEEEESS-SS----S--EEEEEEEECTSSEEEEEESSG---------------------
T ss_pred EEEEEEEcCCCcEEEEEcccccceeccccCc----e-eecccceEcCCCCEEEEEecCC---------------------
Confidence 346777632 35999999988766554321 1 1223 456665 4788886531
Q ss_pred CCCCCcccCCCCeEEEEeCC-CCeEEEecccCCCcceEEEecCCCEEEEE
Q 015463 219 DPSPIKITKDTGRVLKYDPT-TKQTTVLLRNLQFPNGLSLSKDKSFFVFC 267 (406)
Q Consensus 219 ~~~~~~~~~~~g~l~~~d~~-t~~~~~~~~~~~~~ngi~l~~d~~~l~v~ 267 (406)
....-.||+++.+ +++.+.+.........+++|||++.+...
T Consensus 303 -------~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 303 -------NPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp -------GTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred -------CCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 1112359999999 88887776543333479999999876544
No 269
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=81.30 E-value=4.5 Score=24.67 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=26.7
Q ss_pred ccCcccCcceEEEcCCCCeeEEEecCCEEEEEe
Q 015463 64 FLNQIQGPESMAFDPLGRGPYTGVADGRILFWD 96 (406)
Q Consensus 64 ~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~ 96 (406)
+.+.-....++++.++++.+.++..|+.|..|+
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 344555678999999999889999999988775
No 270
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=80.93 E-value=1.4 Score=27.65 Aligned_cols=20 Identities=30% Similarity=0.715 Sum_probs=16.8
Q ss_pred ccccceEEcCCCCEEEEeCC
Q 015463 177 RFTNDLDIDDEGNVYFTDSS 196 (406)
Q Consensus 177 ~~~~~l~~d~dG~ly~t~~~ 196 (406)
..+++|++|++|++|++-.+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEECCCCCEEEEEee
Confidence 35889999999999998643
No 271
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=80.89 E-value=55 Score=31.51 Aligned_cols=77 Identities=16% Similarity=0.318 Sum_probs=47.9
Q ss_pred ccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463 68 IQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (406)
Q Consensus 68 ~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L 145 (406)
...-|-+.+-|.+..+.+|+.+|.++-|... ....+. .+ .+..|+ +| .|-++..++
T Consensus 148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~-~G--h~~~ct--------------~G-----~f~pdGKr~ 205 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM-SG--HNSPCT--------------CG-----EFIPDGKRI 205 (399)
T ss_pred cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe-cC--CCCCcc--------------cc-----cccCCCceE
Confidence 3445666778889989999999999988755 221111 11 111121 23 244534567
Q ss_pred EEEeCCCcEEEEeCCCCeEEE
Q 015463 146 YIADAYFGLMKVGPEGGLATS 166 (406)
Q Consensus 146 ~Vad~~~gl~~~d~~~~~~~~ 166 (406)
..+.....|..+++++++...
T Consensus 206 ~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 206 LTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred EEEecCceEEEEecCCCceeE
Confidence 777666678999999986543
No 272
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=80.75 E-value=33 Score=33.64 Aligned_cols=112 Identities=13% Similarity=0.043 Sum_probs=64.5
Q ss_pred EEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhcccccccccc
Q 015463 135 GLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQ 212 (406)
Q Consensus 135 gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~ 212 (406)
.+++.+....|+.+-.. ..|..+|..++. ........ .--..++++++.+-+ .|..|.++
T Consensus 232 DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~-~~~~~~~~-ah~~~vn~~~fnp~~~~ilAT~S~---------------- 293 (422)
T KOG0264|consen 232 DVAWHPLHEDLFGSVGDDGKLMIWDTRSNT-SKPSHSVK-AHSAEVNCVAFNPFNEFILATGSA---------------- 293 (422)
T ss_pred hhhccccchhhheeecCCCeEEEEEcCCCC-CCCccccc-ccCCceeEEEeCCCCCceEEeccC----------------
Confidence 34455434556654443 457788876431 11111111 112347888988855 44444332
Q ss_pred ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEe-ccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL-LRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+++|..+|+..-..... ..+ -.....|.+||+.+.++.+....+|+.++++.
T Consensus 294 ----------------D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 294 ----------------DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred ----------------CCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 47898898864322111 111 12235788999999999888778899999876
No 273
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=80.30 E-value=8.2 Score=39.62 Aligned_cols=111 Identities=13% Similarity=0.041 Sum_probs=62.7
Q ss_pred ceEEEEeCCC-CcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccc
Q 015463 133 PLGLRFDKKT-GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPL 211 (406)
Q Consensus 133 p~gi~~d~~~-g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~ 211 (406)
...|+|.+-. +-|.++.+...|-.+|..+.+...-..... ..+-+++..+||+...+...
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHt----dqIf~~AWSpdGr~~AtVcK--------------- 740 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHT----DQIFGIAWSPDGRRIATVCK--------------- 740 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCc----CceeEEEECCCCcceeeeec---------------
Confidence 4556666532 335556555678888877654322111111 23568899999988877543
Q ss_pred cccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc-CCCcc--eEEEecCCCEEEEEeCCC---CeEEEEEe
Q 015463 212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN-LQFPN--GLSLSKDKSFFVFCEGSV---GRLHKYWL 279 (406)
Q Consensus 212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~~n--gi~l~~d~~~l~v~~t~~---~~i~~~~~ 279 (406)
+|+|..|+|..++..+.... ..... -|.+.=|++.++++...+ ..|..|+.
T Consensus 741 -----------------Dg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 741 -----------------DGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred -----------------CceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence 58999999987765443211 11111 244555777666665432 23555553
No 274
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=80.18 E-value=32 Score=37.04 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=43.4
Q ss_pred CCeEEEEeCCCCeEEEec-ccCC-----CcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCC---c
Q 015463 229 TGRVLKYDPTTKQTTVLL-RNLQ-----FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPD---N 299 (406)
Q Consensus 229 ~g~l~~~d~~t~~~~~~~-~~~~-----~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd---~ 299 (406)
..+|+++||.-..-+.+. .... .-.++|-+.+|.. +..+..+.|..|+..|.++.+ .+||+-+ +
T Consensus 551 ~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~i--avgs~~G~IRLyd~~g~~AKT-----~lp~lG~pI~~ 623 (794)
T PF08553_consen 551 DNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYI--AVGSNKGDIRLYDRLGKRAKT-----ALPGLGDPIIG 623 (794)
T ss_pred CCceEEeccCCCCCceeeccccccccCCCceEEEecCCceE--EEEeCCCcEEeecccchhhhh-----cCCCCCCCeeE
Confidence 367999999753211111 1111 1235666666643 333456788888755433222 1455433 5
Q ss_pred eEECCCCCEEEEEcc
Q 015463 300 VRTNEKGEFWVAIHC 314 (406)
Q Consensus 300 i~~d~~G~lwv~~~~ 314 (406)
|.+..||+..+|+..
T Consensus 624 iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 624 IDVTADGKWILATCK 638 (794)
T ss_pred EEecCCCcEEEEeec
Confidence 678899987677644
No 275
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=79.38 E-value=85 Score=32.76 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=61.9
Q ss_pred eEEEEeCCCCcEEEEeCCC-------cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccc
Q 015463 134 LGLRFDKKTGDLYIADAYF-------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQK 206 (406)
Q Consensus 134 ~gi~~d~~~g~L~Vad~~~-------gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~ 206 (406)
.|+++- +|.|||.-... -+.+||+.+++...++...... .--++++- +|.||+.-...+
T Consensus 326 ~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R---~~~~v~~l-~g~iYavGG~dg-------- 391 (571)
T KOG4441|consen 326 VGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR---SDFGVAVL-DGKLYAVGGFDG-------- 391 (571)
T ss_pred ccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc---ccceeEEE-CCEEEEEecccc--------
Confidence 456665 57888875544 3789999988866543321111 11123322 788998753210
Q ss_pred ccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC------CCeEEEEEee
Q 015463 207 ENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS------VGRLHKYWLI 280 (406)
Q Consensus 207 ~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~------~~~i~~~~~~ 280 (406)
......+-+|||.+.+++....-...-.+.+...=+..+|++.-. -..+.+|+..
T Consensus 392 -------------------~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 392 -------------------EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred -------------------ccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC
Confidence 111245999999999887765332222222222223457776431 1345666643
No 276
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=79.30 E-value=58 Score=30.81 Aligned_cols=72 Identities=18% Similarity=0.294 Sum_probs=51.4
Q ss_pred cccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEE-EeCCCCeEE-EecccCCCc--c
Q 015463 178 FTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLK-YDPTTKQTT-VLLRNLQFP--N 253 (406)
Q Consensus 178 ~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~-~d~~t~~~~-~~~~~~~~~--n 253 (406)
.+..++...+|.+..|.+. .|.|.| ||..+|+.. .+..+...+ .
T Consensus 183 ~Iacv~Ln~~Gt~vATaSt--------------------------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATAST--------------------------------KGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred ceeEEEEcCCccEEEEecc--------------------------------CcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 4567888889999888654 366655 688877543 344554444 4
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463 254 GLSLSKDKSFFVFCEGSVGRLHKYWLIGE 282 (406)
Q Consensus 254 gi~l~~d~~~l~v~~t~~~~i~~~~~~g~ 282 (406)
.+++|||...|-++ +.++.|..+.+.+.
T Consensus 231 ~iaFSp~~s~Lavs-SdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVS-SDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEE-cCCCeEEEEEeecC
Confidence 79999999877666 55789999998864
No 277
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.80 E-value=12 Score=36.07 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=58.7
Q ss_pred cCCCCeEEEEeCCCCeEEEecccC--CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEEC
Q 015463 226 TKDTGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 303 (406)
Q Consensus 226 ~~~~g~l~~~d~~t~~~~~~~~~~--~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d 303 (406)
.+..+.|-.||+..++--+..-.+ .....+++.|+++++|+.++ .+.+..+++.+.+... ..|....|.+..|.+.
T Consensus 222 ~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g-~~~kg~tGsirsih~h 299 (412)
T KOG3881|consen 222 ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLG-CGLKGITGSIRSIHCH 299 (412)
T ss_pred EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCceeec-cccCCccCCcceEEEc
Confidence 455678999999866543322111 11245778899999998876 6789999977543221 1133456778889998
Q ss_pred CCCCEEEEEccCC
Q 015463 304 EKGEFWVAIHCRR 316 (406)
Q Consensus 304 ~~G~lwv~~~~~~ 316 (406)
+.+.+...+.-.|
T Consensus 300 p~~~~las~GLDR 312 (412)
T KOG3881|consen 300 PTHPVLASCGLDR 312 (412)
T ss_pred CCCceEEeeccce
Confidence 8888877765444
No 278
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.63 E-value=17 Score=36.78 Aligned_cols=100 Identities=11% Similarity=0.108 Sum_probs=59.4
Q ss_pred EEEeCCCcEEEEeCCCCeEEEcc-cc-cCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463 146 YIADAYFGLMKVGPEGGLATSLA-TE-AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI 223 (406)
Q Consensus 146 ~Vad~~~gl~~~d~~~~~~~~l~-~~-~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 223 (406)
+|+-+.++|+++||.-.....+. .. ..-..-+..++++...+|.|-++.-
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~---------------------------- 449 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSL---------------------------- 449 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeec----------------------------
Confidence 45556678888888622111111 11 0111123456777777887777653
Q ss_pred cccCCCCeEEEEeCCCCeEEEecccCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 224 KITKDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 224 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
.|.|-.||.-..+.+....++..+ ..|.++.||++++.+ ...-|..++..
T Consensus 450 -----~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~T--c~tyLlLi~t~ 500 (644)
T KOG2395|consen 450 -----KGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILAT--CKTYLLLIDTL 500 (644)
T ss_pred -----CCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEe--cccEEEEEEEe
Confidence 367888887655666666666555 578899999977553 34566666544
No 279
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=78.61 E-value=61 Score=30.71 Aligned_cols=58 Identities=17% Similarity=0.112 Sum_probs=38.7
Q ss_pred ceEEEEeCCCCc-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeC
Q 015463 133 PLGLRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS 195 (406)
Q Consensus 133 p~gi~~d~~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~ 195 (406)
...+.|.+ -|. |-++-..+.+.++|..|-.+.... +.-..-+.+++..+||+..+|.+
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~l----saH~~pi~sl~WS~dgr~LltsS 84 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARML----SAHVRPITSLCWSRDGRKLLTSS 84 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhh----hccccceeEEEecCCCCEeeeec
Confidence 44677887 454 567766678999998775432221 11123467899999999999875
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=78.48 E-value=48 Score=32.16 Aligned_cols=153 Identities=15% Similarity=0.180 Sum_probs=82.2
Q ss_pred CcceEEEcCCCCeeEEEecCCEEEEEeCC---c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463 70 GPESMAFDPLGRGPYTGVADGRILFWDGL---K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L 145 (406)
.+..+...++++++++++.+.+.+.++-. + ++... .....-+|..+.+..++-..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~---------------------~~~v~~~~~ai~~~~~~~sv 122 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLD---------------------VSCVPKRPTAISFIREDTSV 122 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeee---------------------EeecccCcceeeeeeccceE
Confidence 45555666678877777777665444322 1 11110 01123457778887756677
Q ss_pred EEEeCCCcEEEEeCCC---CeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463 146 YIADAYFGLMKVGPEG---GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP 222 (406)
Q Consensus 146 ~Vad~~~gl~~~d~~~---~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 222 (406)
.|++..+-.+.+|.-. +..+... | ....+.++++.+|+...++..- .++
T Consensus 123 ~v~dkagD~~~~di~s~~~~~~~~~l----G-hvSml~dVavS~D~~~IitaDR-----------------------DEk 174 (390)
T KOG3914|consen 123 LVADKAGDVYSFDILSADSGRCEPIL----G-HVSMLLDVAVSPDDQFIITADR-----------------------DEK 174 (390)
T ss_pred EEEeecCCceeeeeecccccCcchhh----h-hhhhhheeeecCCCCEEEEecC-----------------------Cce
Confidence 7887665566655322 2222111 1 1345778889888877766421 111
Q ss_pred CcccCCCCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463 223 IKITKDTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 223 ~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g 281 (406)
=++.+|.. +-..+.+ ...-.|...+++.++. ++++..+.+.|+.+++..
T Consensus 175 -------IRvs~ypa-~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 175 -------IRVSRYPA-TFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRLWDITS 224 (390)
T ss_pred -------EEEEecCc-ccchhhhccccHhheeeeeeccCc--eeeecCCCCcEEEEeccc
Confidence 23444432 2222222 1222455678876543 467777777888877663
No 281
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=78.38 E-value=26 Score=36.74 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=67.9
Q ss_pred ceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccc
Q 015463 133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQ 212 (406)
Q Consensus 133 p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~ 212 (406)
.+.|++|+.-+.+.++-.++.|.+|+.+.++.........+. -..+-.+..|+.| +|++++-
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~-eG~lIKv~lDPSg-iY~atSc---------------- 660 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH-EGDLIKVILDPSG-IYLATSC---------------- 660 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC-CCceEEEEECCCc-cEEEEee----------------
Confidence 456777773344444444567888888877654332221111 1124456788887 5555432
Q ss_pred ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCC-cceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF-PNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~-~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
.+..|..||-.+|+...-+.+... ..|+-+.+|=+.| ++-.+.++|+++.+.
T Consensus 661 ---------------sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHl-ISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 661 ---------------SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHL-ISVSGDGCIFVWKLP 713 (1080)
T ss_pred ---------------cCCceEEEEeccchhhhhhcCcchheeeeeecccchhh-eeecCCceEEEEECc
Confidence 124588888888887554444333 4688888888766 555667788777654
No 282
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.23 E-value=47 Score=34.43 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=84.1
Q ss_pred CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad 149 (406)
...+|+.-.+|+.+...+.|-.|..|+...--.+ |-.-. -+| ......++.-..+..+ |++
T Consensus 75 WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~----------c~sti-------r~H-~DYVkcla~~ak~~~l-vaS 135 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF----------CMSTI-------RTH-KDYVKCLAYIAKNNEL-VAS 135 (735)
T ss_pred HHhhHHhhcCCCceEEecCCceEEEeecccCcch----------hHhhh-------hcc-cchheeeeecccCcee-EEe
Confidence 3445555556765777788888888876511011 11000 001 1223445552214444 444
Q ss_pred CC--CcEEEEeCCCCeEEEcccc-------cCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463 150 AY--FGLMKVGPEGGLATSLATE-------AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP 220 (406)
Q Consensus 150 ~~--~gl~~~d~~~~~~~~l~~~-------~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~ 220 (406)
.+ +.|+.+|.+++..+.+.+. ....+...+.+++..+.|.+.++...
T Consensus 136 gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt------------------------ 191 (735)
T KOG0308|consen 136 GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT------------------------ 191 (735)
T ss_pred cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc------------------------
Confidence 43 5799999887743221110 11123445677888888878776532
Q ss_pred CCCcccCCCCeEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 221 SPIKITKDTGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
.+-|..|||.+++...-+.+. .+...+.+++||..++-+ ...+.|..+++.
T Consensus 192 --------ek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~-sSDgtIrlWdLg 243 (735)
T KOG0308|consen 192 --------EKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSA-SSDGTIRLWDLG 243 (735)
T ss_pred --------ccceEEeccccccceeeeeccccceEEEEEcCCCCeEeec-CCCceEEeeecc
Confidence 255888899887543222222 233456778888776443 444555555543
No 283
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=78.23 E-value=27 Score=33.01 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=80.1
Q ss_pred Ccccccccccceecc--CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccC
Q 015463 51 KDDKNLLQNSEIKFL--NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNE 127 (406)
Q Consensus 51 ~~~~~~l~~~~~~~~--~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (406)
+......+.+.+.++ |.-.+-.+.+++++.+.+.+.+.||.+..||.+ +... .++. . .-........
T Consensus 259 f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~----~qDp-k-----~Lk~g~~pl~ 328 (420)
T KOG2096|consen 259 FTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA----GQDP-K-----ILKEGSAPLH 328 (420)
T ss_pred eccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec----CCCc-h-----HhhcCCcchh
Confidence 445566777777665 333455778898887778999999999988876 2211 0000 0 0000000223
Q ss_pred CcCCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEe
Q 015463 128 HICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTD 194 (406)
Q Consensus 128 ~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~ 194 (406)
..++.|.-+.++| +|.++.+..+..|-.+..++|+...-..... -..+.+|..+++|+..+|.
T Consensus 329 aag~~p~RL~lsP-~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h---~~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 329 AAGSEPVRLELSP-SGDSLAVSFGSDLKVFASEDGKDYPELEDIH---STTISSISYSSDGKYIATC 391 (420)
T ss_pred hcCCCceEEEeCC-CCcEEEeecCCceEEEEcccCccchhHHHhh---cCceeeEEecCCCcEEeee
Confidence 3456788889999 7888777777778888877665432111111 1246678899999877765
No 284
>PHA02713 hypothetical protein; Provisional
Probab=78.08 E-value=91 Score=32.39 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=42.0
Q ss_pred CCcEEEEeCC-------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463 142 TGDLYIADAY-------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC 214 (406)
Q Consensus 142 ~g~L~Vad~~-------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~ 214 (406)
++.|||.-.. ..++++|+.++....+...... .... . ++.-+|.||+-....+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~--R~~~-~-~~~~~g~IYviGG~~~---------------- 362 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN--RCRF-S-LAVIDDTIYAIGGQNG---------------- 362 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch--hhce-e-EEEECCEEEEECCcCC----------------
Confidence 5788887432 2378999988876554322111 1111 2 2233788998653210
Q ss_pred ccCCCCCCCcccCCCCeEEEEeCCCCeEEEec
Q 015463 215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL 246 (406)
Q Consensus 215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~ 246 (406)
......+.+|||.++++..+.
T Consensus 363 -----------~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 363 -----------TNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred -----------CCCCceEEEEECCCCeEEECC
Confidence 011235999999998877653
No 285
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=77.54 E-value=65 Score=30.44 Aligned_cols=105 Identities=16% Similarity=0.274 Sum_probs=63.8
Q ss_pred cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463 69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (406)
Q Consensus 69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va 148 (406)
.--.+|-+.|.|..+.+|+.-..+..+|-+..+-|....+ ..++ .+....+...+ .|+|||.
T Consensus 217 ~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP----------------d~qh-t~ai~~V~Ys~-t~~lYvT 278 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP----------------DDQH-TGAITQVRYSS-TGSLYVT 278 (430)
T ss_pred ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc----------------cccc-ccceeEEEecC-CccEEEE
Confidence 4457888889999888888777666666664444432211 1112 23355677887 8999999
Q ss_pred eCCCc-EEEEeCCCCe-EEEcccccCCcccccccceEEcCCCCEEEEe
Q 015463 149 DAYFG-LMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTD 194 (406)
Q Consensus 149 d~~~g-l~~~d~~~~~-~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~ 194 (406)
.+..| |-.+|--+++ ++.+....+|. .+.+..+.++|+...+.
T Consensus 279 aSkDG~IklwDGVS~rCv~t~~~AH~gs---evcSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 279 ASKDGAIKLWDGVSNRCVRTIGNAHGGS---EVCSAVFTKNGKYILSS 323 (430)
T ss_pred eccCCcEEeeccccHHHHHHHHhhcCCc---eeeeEEEccCCeEEeec
Confidence 88765 6666643332 22222222222 35567788898877764
No 286
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.51 E-value=63 Score=31.14 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=32.4
Q ss_pred EEEEeCCCCc-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463 135 GLRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS 196 (406)
Q Consensus 135 gi~~d~~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~ 196 (406)
.++|-+ .|+ +.-+...+.|..++.+++-...-. .+. ...+.-+.+..||+|..+-+.
T Consensus 198 ~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~---~~h-~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 198 SVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTF---PGH-SEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eEEEEe-cCCeeeecccccceeEEecccceeEEec---cCc-hHhEEEEEecCCeeEEEecCC
Confidence 456666 343 333333367888888877432211 111 125666788889998887653
No 287
>PHA03098 kelch-like protein; Provisional
Probab=77.33 E-value=91 Score=31.99 Aligned_cols=75 Identities=7% Similarity=-0.010 Sum_probs=41.9
Q ss_pred CCcEEEEeCC------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463 142 TGDLYIADAY------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS 215 (406)
Q Consensus 142 ~g~L~Vad~~------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~ 215 (406)
++.|||.... .-+.++|+.+++.+........ . .-... ..-+|.||+.......
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~--r-~~~~~-~~~~~~iYv~GG~~~~---------------- 401 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP--R-YNPCV-VNVNNLIYVIGGISKN---------------- 401 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC--C-ccceE-EEECCEEEEECCcCCC----------------
Confidence 5788876432 2378899988876654322111 1 11122 2236789986431000
Q ss_pred cCCCCCCCcccCCCCeEEEEeCCCCeEEEec
Q 015463 216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLL 246 (406)
Q Consensus 216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~ 246 (406)
......+.+||+.+++++.+.
T Consensus 402 ----------~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 402 ----------DELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred ----------CcccceEEEEeCCCCeeeecC
Confidence 111246899999998877653
No 288
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=77.11 E-value=74 Score=32.87 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=81.1
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCC
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY 151 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~ 151 (406)
.++..+ +++++.|+.+|.|..|+....+-+... ....++...+.++. ...++-+...
T Consensus 335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl--------------------~gH~~~V~sl~~~~-~~~~~Sgs~D 391 (537)
T KOG0274|consen 335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL--------------------SGHTGRVYSLIVDS-ENRLLSGSLD 391 (537)
T ss_pred EEEEec--CCEEEEEecCceEEEEEhhhceeeeee--------------------cCCcceEEEEEecC-cceEEeeeec
Confidence 445554 667999999999999987632222211 11246678888875 3667777666
Q ss_pred CcEEEEeCCCC-eEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463 152 FGLMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG 230 (406)
Q Consensus 152 ~gl~~~d~~~~-~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g 230 (406)
..|..+|..+. +...... +. ...++++.. .++++++.+. +|
T Consensus 392 ~~IkvWdl~~~~~c~~tl~---~h-~~~v~~l~~--~~~~Lvs~~a--------------------------------D~ 433 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQ---GH-TSLVSSLLL--RDNFLVSSSA--------------------------------DG 433 (537)
T ss_pred cceEeecCCchhhhhhhhc---CC-ccccccccc--ccceeEeccc--------------------------------cc
Confidence 67899998876 2211111 10 111233332 4566666542 35
Q ss_pred eEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 231 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 231 ~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
.+..+|.++++......+. .-.++..-..++-.+++....+.+..+++.
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGR-HVGGVSALALGKEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred cEEEeecccCceeeeeccC-CcccEEEeecCcceEEEEecCCeeEEEecc
Confidence 6777888877765554442 112222222222233444556677777765
No 289
>PHA02790 Kelch-like protein; Provisional
Probab=76.96 E-value=89 Score=31.72 Aligned_cols=129 Identities=7% Similarity=-0.022 Sum_probs=66.4
Q ss_pred CCcEEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCC
Q 015463 142 TGDLYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLN 218 (406)
Q Consensus 142 ~g~L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~ 218 (406)
+|.||+.-.. ..+.++|+.+++...+..... +. ...-++.-+|.||+.-...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~--~r--~~~~~~~~~g~IYviGG~~--------------------- 372 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK--PR--CNPAVASINNVIYVIGGHS--------------------- 372 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC--CC--cccEEEEECCEEEEecCcC---------------------
Confidence 6889887542 347888888776655432211 11 1112233478999875320
Q ss_pred CCCCCcccCCCCeEEEEeCCCCeEEEecccCCCc---ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCC
Q 015463 219 DPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP---NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG 295 (406)
Q Consensus 219 ~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~---ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g 295 (406)
. ....+.+|||++++.+... .+..+ .+++ .-++ .+|+.. +...+|+.+ ..+.+....++.
T Consensus 373 -------~-~~~~ve~ydp~~~~W~~~~-~m~~~r~~~~~~-~~~~-~IYv~G---G~~e~ydp~---~~~W~~~~~m~~ 435 (480)
T PHA02790 373 -------E-TDTTTEYLLPNHDQWQFGP-STYYPHYKSCAL-VFGR-RLFLVG---RNAEFYCES---SNTWTLIDDPIY 435 (480)
T ss_pred -------C-CCccEEEEeCCCCEEEeCC-CCCCccccceEE-EECC-EEEEEC---CceEEecCC---CCcEeEcCCCCC
Confidence 0 1134788999988876643 22222 1222 2234 577764 346667753 334443333321
Q ss_pred --CCCceEECCCCCEEEEEc
Q 015463 296 --YPDNVRTNEKGEFWVAIH 313 (406)
Q Consensus 296 --~pd~i~~d~~G~lwv~~~ 313 (406)
.--++++ -+|.|||...
T Consensus 436 ~r~~~~~~v-~~~~IYviGG 454 (480)
T PHA02790 436 PRDNPELII-VDNKLLLIGG 454 (480)
T ss_pred CccccEEEE-ECCEEEEECC
Confidence 1113333 3567777653
No 290
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=76.42 E-value=28 Score=33.90 Aligned_cols=153 Identities=18% Similarity=0.110 Sum_probs=85.1
Q ss_pred CcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463 70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI 147 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V 147 (406)
...++++.++...+.+.+.||.|..||.. .-..+. ...+-.+..+...+..+.+..
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL----------------------~GHgwdVksvdWHP~kgLias 239 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL----------------------RGHGWDVKSVDWHPTKGLIAS 239 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCCchhhee----------------------ccCCCCcceeccCCccceeEE
Confidence 44677888766656677888988888754 111110 001233556677774555555
Q ss_pred EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463 148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227 (406)
Q Consensus 148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 227 (406)
+.-.+-+-.+|++++.. +.+... -.+.+..+.+.++|+...|-+.
T Consensus 240 gskDnlVKlWDprSg~c--l~tlh~--HKntVl~~~f~~n~N~Llt~sk------------------------------- 284 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGSC--LATLHG--HKNTVLAVKFNPNGNWLLTGSK------------------------------- 284 (464)
T ss_pred ccCCceeEeecCCCcch--hhhhhh--ccceEEEEEEcCCCCeeEEccC-------------------------------
Confidence 54446567789988753 222111 1134667778888877776542
Q ss_pred CCCeEEEEeCCC-CeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 228 DTGRVLKYDPTT-KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 228 ~~g~l~~~d~~t-~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+-.+-.||-.+ +++..+...-.....++.+|=...++.+....+.|..+.+.
T Consensus 285 -D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 285 -DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred -CceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 12345555542 12222221223345566677666777776666777666554
No 291
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=75.62 E-value=40 Score=31.07 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=41.8
Q ss_pred cccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEE-ecccCCCcceEE
Q 015463 178 FTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTV-LLRNLQFPNGLS 256 (406)
Q Consensus 178 ~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~~~~~~~~ngi~ 256 (406)
.++++.+-+||.|..|.. | ++|+..|+-++.+.-. +...-...|.+|
T Consensus 253 Gv~gvrIRpD~KIlATAG--------W------------------------D~RiRVyswrtl~pLAVLkyHsagvn~vA 300 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAG--------W------------------------DHRIRVYSWRTLNPLAVLKYHSAGVNAVA 300 (323)
T ss_pred CccceEEccCCcEEeecc--------c------------------------CCcEEEEEeccCCchhhhhhhhcceeEEE
Confidence 467888999999988863 2 3666666656554332 222234568899
Q ss_pred EecCCCEEEEEeCCCCeEEEEE
Q 015463 257 LSKDKSFFVFCEGSVGRLHKYW 278 (406)
Q Consensus 257 l~~d~~~l~v~~t~~~~i~~~~ 278 (406)
++||-. +..+.....+|-.+.
T Consensus 301 fspd~~-lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 301 FSPDCE-LMAAASKDARISLWK 321 (323)
T ss_pred eCCCCc-hhhhccCCceEEeee
Confidence 999854 334434445655443
No 292
>PHA02790 Kelch-like protein; Provisional
Probab=75.21 E-value=99 Score=31.38 Aligned_cols=85 Identities=8% Similarity=0.002 Sum_probs=48.1
Q ss_pred CCcEEEEeCC----CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463 142 TGDLYIADAY----FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL 217 (406)
Q Consensus 142 ~g~L~Vad~~----~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~ 217 (406)
+|.|||.-.. ..+.++||++++.+....... +.... . ++.-+|.||+..
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~--~r~~~-~-~~~~~~~IYv~G----------------------- 414 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY--PHYKS-C-ALVFGRRLFLVG----------------------- 414 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC--ccccc-e-EEEECCEEEEEC-----------------------
Confidence 6889986432 236788998887665432211 11111 2 223367888863
Q ss_pred CCCCCCcccCCCCeEEEEeCCCCeEEEecccCCC---cceEEEecCCCEEEEEe
Q 015463 218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF---PNGLSLSKDKSFFVFCE 268 (406)
Q Consensus 218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~---~ngi~l~~d~~~l~v~~ 268 (406)
|..-+|||++++.+.+.. +.. ..|++.. ++ .+|+..
T Consensus 415 ------------G~~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~-~~-~IYviG 453 (480)
T PHA02790 415 ------------RNAEFYCESSNTWTLIDD-PIYPRDNPELIIV-DN-KLLLIG 453 (480)
T ss_pred ------------CceEEecCCCCcEeEcCC-CCCCccccEEEEE-CC-EEEEEC
Confidence 347789999988876542 222 2344443 34 466653
No 293
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=74.31 E-value=80 Score=33.75 Aligned_cols=102 Identities=22% Similarity=0.218 Sum_probs=58.2
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCC
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY 151 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~ 151 (406)
.+.++.+.++.+-++..+|+|..|..-+. .+..+.|+. ..+- -....++.|..+...||-|-.-
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------~~~~~t~t~-------lHWH--~~~V~~L~fS~~G~~LlSGG~E 272 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGS-------SDDSETCTL-------LHWH--HDEVNSLSFSSDGAYLLSGGRE 272 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEecccc-------ccccccceE-------EEec--ccccceeEEecCCceEeecccc
Confidence 45677788886777778899988854210 000011110 0111 1335678898844456655433
Q ss_pred CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEe
Q 015463 152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTD 194 (406)
Q Consensus 152 ~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~ 194 (406)
.=+.++..++++.+.|... .+ -+-++.+.+|+++|...
T Consensus 273 ~VLv~Wq~~T~~kqfLPRL-gs----~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 273 GVLVLWQLETGKKQFLPRL-GS----PILHIVVSPDSDLYSLV 310 (792)
T ss_pred eEEEEEeecCCCccccccc-CC----eeEEEEEcCCCCeEEEE
Confidence 3366788788774444322 22 24577888899888764
No 294
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=73.83 E-value=76 Score=29.42 Aligned_cols=118 Identities=8% Similarity=0.050 Sum_probs=69.5
Q ss_pred CCcceEEEEeCCCCcEEE-EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463 130 CGRPLGLRFDKKTGDLYI-ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~V-ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~ 208 (406)
.+|...+++.+..|+++. +...+.|..++..++.--...+..++.-...+..++..|.|++..+.+-
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF------------ 81 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF------------ 81 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec------------
Confidence 357888999983366443 3333567777765322111111122223456888999999995444331
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec--ccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL--RNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
++.+..+....++++.+. ++. ...-+++++++|++|--+ +....+|.+.++
T Consensus 82 --------------------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATC-SRDKSVWiWe~d 135 (312)
T KOG0645|consen 82 --------------------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATC-SRDKSVWIWEID 135 (312)
T ss_pred --------------------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEe-eCCCeEEEEEec
Confidence 244555555566666542 332 234589999999876544 345678888776
No 295
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=73.61 E-value=69 Score=28.80 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=18.1
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEE
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFW 95 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~ 95 (406)
-+.++.+.|.++-+|+.+..|..+
T Consensus 93 yc~~ws~~geliatgsndk~ik~l 116 (350)
T KOG0641|consen 93 YCTAWSPCGELIATGSNDKTIKVL 116 (350)
T ss_pred EEEEecCccCeEEecCCCceEEEE
Confidence 577899999977788887766444
No 296
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=72.71 E-value=15 Score=35.16 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=59.6
Q ss_pred CCcceEEEEeCCCCc-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463 130 CGRPLGLRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~ 208 (406)
.-++++|++.| ++- .-+|+.+..||.+|...=+ +.+. ...+ -.+.+.++++.+.|.=+++.+.
T Consensus 229 ~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~-~p~~-v~~d-hvsAV~dVdfsptG~Efvsgsy------------ 292 (433)
T KOG0268|consen 229 TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS-RPLN-VHKD-HVSAVMDVDFSPTGQEFVSGSY------------ 292 (433)
T ss_pred eccccceecCc-cccceeeccccccceehhhhhhc-ccch-hhcc-cceeEEEeccCCCcchhccccc------------
Confidence 35677888888 444 4455555778888854211 1111 0001 1234667888888877777542
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEE-e-cccCCCcceEEEecCCCEEEEEeCCCC--eEEEEE
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTV-L-LRNLQFPNGLSLSKDKSFFVFCEGSVG--RLHKYW 278 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~-~~~~~~~ngi~l~~d~~~l~v~~t~~~--~i~~~~ 278 (406)
+-.+-.|....+..+- + ....+..-++.+|-|.+++ ++.+... |+|+-+
T Consensus 293 --------------------DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi-~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 293 --------------------DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYI-ISGSDDGNVRLWKAK 345 (433)
T ss_pred --------------------cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEE-EecCCCcceeeeecc
Confidence 1223333333333222 2 2334555678899998866 4444433 455543
No 297
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=72.55 E-value=1.3e+02 Score=31.56 Aligned_cols=25 Identities=12% Similarity=-0.009 Sum_probs=17.1
Q ss_pred CCCeeEEEecCCEEEEEeCCceeEE
Q 015463 79 LGRGPYTGVADGRILFWDGLKWTDF 103 (406)
Q Consensus 79 ~g~~ly~g~~~g~I~~~~~~~~~~~ 103 (406)
++..+.+|..|+.|.++...+..++
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~ 94 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPL 94 (745)
T ss_pred cCcceEeecccceEEEEecCCCCch
Confidence 4333888988988888876644443
No 298
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=72.36 E-value=1.2e+02 Score=31.00 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=52.2
Q ss_pred CCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463 142 TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221 (406)
Q Consensus 142 ~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 221 (406)
-+.||-+++...+..++++.+......... ...+..+++.+||.+..+.+
T Consensus 114 ~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~----~~~~~sl~is~D~~~l~~as-------------------------- 163 (541)
T KOG4547|consen 114 LGCIYSVGADLKVVYILEKEKVIIRIWKEQ----KPLVSSLCISPDGKILLTAS-------------------------- 163 (541)
T ss_pred cCceEecCCceeEEEEecccceeeeeeccC----CCccceEEEcCCCCEEEecc--------------------------
Confidence 356777766677888888776554332221 12467889999998887654
Q ss_pred CCcccCCCCeEEEEeCCCCeEEEecccCCCc-ceEEEecC
Q 015463 222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKD 260 (406)
Q Consensus 222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d 260 (406)
+.|-.||.+++++-...++...+ +.+++..+
T Consensus 164 --------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 164 --------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred --------ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence 45888888888776666665544 34444433
No 299
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=72.26 E-value=97 Score=32.52 Aligned_cols=59 Identities=8% Similarity=0.070 Sum_probs=36.5
Q ss_pred eEEEEeCCCCeEEEecccCCC-cceEEEecCCCEEEEEeCCC----CeEEEEEeeCCCCcceeeee
Q 015463 231 RVLKYDPTTKQTTVLLRNLQF-PNGLSLSKDKSFFVFCEGSV----GRLHKYWLIGEKAGNLEAFA 291 (406)
Q Consensus 231 ~l~~~d~~t~~~~~~~~~~~~-~ngi~l~~d~~~l~v~~t~~----~~i~~~~~~g~~~~~~~~~~ 291 (406)
.|...|..|++. +.+.+.. ..++++++|++++|++.... .++++..+.++......+|.
T Consensus 156 ~lr~kdL~tg~~--~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvye 219 (682)
T COG1770 156 TLRFKDLATGEE--LPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYE 219 (682)
T ss_pred EEEEEecccccc--cchhhcccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEE
Confidence 466777777753 2333333 45788999999998886544 35777777654344433443
No 300
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=72.07 E-value=96 Score=33.58 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=19.8
Q ss_pred CCcEEEEeCCCcEEEEeCCCCeEE
Q 015463 142 TGDLYIADAYFGLMKVGPEGGLAT 165 (406)
Q Consensus 142 ~g~L~Vad~~~gl~~~d~~~~~~~ 165 (406)
++++|+++....|+.+|.++|+..
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLC 283 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEE
Confidence 468999988888999999988653
No 301
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=71.70 E-value=1.1e+02 Score=30.18 Aligned_cols=84 Identities=12% Similarity=0.093 Sum_probs=46.7
Q ss_pred CeEEEEeCCCCeEEEecccCCC--cceEEEecCCCEEEEEeCCC----------CeEEEEEeeCCCCcceeeeecCC-CC
Q 015463 230 GRVLKYDPTTKQTTVLLRNLQF--PNGLSLSKDKSFFVFCEGSV----------GRLHKYWLIGEKAGNLEAFAILP-GY 296 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~~~~~~~--~ngi~l~~d~~~l~v~~t~~----------~~i~~~~~~g~~~~~~~~~~~l~-g~ 296 (406)
-.|+.+|.++|+... +.+.. ..++++.+|++.+|++.... .+|+++.+..+......+|.... .+
T Consensus 150 ~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~ 227 (414)
T PF02897_consen 150 YTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPF 227 (414)
T ss_dssp EEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT
T ss_pred EEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCc
Confidence 459999999986532 22222 22389999999888876433 34777776543333334554321 11
Q ss_pred -CCceEECCCCCE-EEEEccC
Q 015463 297 -PDNVRTNEKGEF-WVAIHCR 315 (406)
Q Consensus 297 -pd~i~~d~~G~l-wv~~~~~ 315 (406)
--++..+++|++ .+.....
T Consensus 228 ~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 228 WFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp SEEEEEE-TTSSEEEEEEESS
T ss_pred EEEEEEecCcccEEEEEEEcc
Confidence 224567788884 4444433
No 302
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=71.05 E-value=1.2e+02 Score=30.69 Aligned_cols=154 Identities=15% Similarity=0.175 Sum_probs=80.8
Q ss_pred cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463 69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (406)
Q Consensus 69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va 148 (406)
..+-++.+.++|+.|-+|+.+|.+..||........... .+...|.-.++.. ...+-.+
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~-------------------~~h~~rvg~laW~--~~~lssG 276 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR-------------------GSHASRVGSLAWN--SSVLSSG 276 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc-------------------CCcCceeEEEecc--CceEEEe
Confidence 566788899999988999999999999976222211110 0012333333332 2333333
Q ss_pred eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463 149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD 228 (406)
Q Consensus 149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 228 (406)
...+-|..+|....+. ......+ --..+.++...+||+...+-. .
T Consensus 277 sr~~~I~~~dvR~~~~--~~~~~~~-H~qeVCgLkws~d~~~lASGg--------------------------------n 321 (484)
T KOG0305|consen 277 SRDGKILNHDVRISQH--VVSTLQG-HRQEVCGLKWSPDGNQLASGG--------------------------------N 321 (484)
T ss_pred cCCCcEEEEEEecchh--hhhhhhc-ccceeeeeEECCCCCeeccCC--------------------------------C
Confidence 3334566666543321 1110000 112466778888887665532 2
Q ss_pred CCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCC-CCeEEEEE
Q 015463 229 TGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYW 278 (406)
Q Consensus 229 ~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~-~~~i~~~~ 278 (406)
+++++.+|..+.+.... .+.....-.++++|=...++.+..+ ..+.+++|
T Consensus 322 DN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred ccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 45677777643332222 2222233457788876667666432 23455554
No 303
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=70.72 E-value=1.7e+02 Score=32.21 Aligned_cols=115 Identities=18% Similarity=0.325 Sum_probs=70.6
Q ss_pred cceEEEEeCCCCcEEEEeCCC-cEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccc
Q 015463 132 RPLGLRFDKKTGDLYIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENI 209 (406)
Q Consensus 132 ~p~gi~~d~~~g~L~Vad~~~-gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~ 209 (406)
.|-+++.|.-.+++|-+|... .+...+.++.....+... .+..+..+++++ .|.+|+++++. .
T Consensus 481 ~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~----~l~~~r~~~v~p~~g~~~wtd~~~-~---------- 545 (877)
T KOG1215|consen 481 IPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSK----DLDLPRSIAVDPEKGLMFWTDWGQ-P---------- 545 (877)
T ss_pred ccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEec----CCCCccceeeccccCeeEEecCCC-C----------
Confidence 367899998778898888764 344444444432333222 123577889988 67899998652 1
Q ss_pred cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCCCC-eEEEEEeeC
Q 015463 210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVG-RLHKYWLIG 281 (406)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~~-~i~~~~~~g 281 (406)
. ++.+-..+.-....+ ..++..|+|++++--.+.+|+.+.... .+.+.+..|
T Consensus 546 -------------------~-~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g 599 (877)
T KOG1215|consen 546 -------------------P-RIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDG 599 (877)
T ss_pred -------------------c-hhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCC
Confidence 0 222222221222222 344678999999887788999987665 577777665
No 304
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=68.63 E-value=9.5 Score=22.32 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=19.1
Q ss_pred CCcEEEEeCCCcEEEEeCCCCeE
Q 015463 142 TGDLYIADAYFGLMKVGPEGGLA 164 (406)
Q Consensus 142 ~g~L~Vad~~~gl~~~d~~~~~~ 164 (406)
+|.+|+++..+.|+.+|.++|+.
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcE
Confidence 57899998878899999987764
No 305
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=68.29 E-value=1.2e+02 Score=29.54 Aligned_cols=192 Identities=13% Similarity=0.083 Sum_probs=95.3
Q ss_pred cceEEEcCCCCeeEEEecCCEEEEEeCCc--eeEEEeecCCCccccCCCCCccccccc-CCcCCcceEEEEeCCCCcEEE
Q 015463 71 PESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSNNRSELCNPKPIATSYLKN-EHICGRPLGLRFDKKTGDLYI 147 (406)
Q Consensus 71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gi~~d~~~g~L~V 147 (406)
...|.+..+|+.|..|..+-++..|+.++ +........ .+ ++.-.....++|+..+..||-
T Consensus 59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~----------------~~~~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG----------------VMEHPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce----------------eccCccccceEEEEEccCCeeEec
Confidence 35677877887555566666666666541 111100000 11 112244668899874444666
Q ss_pred EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463 148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227 (406)
Q Consensus 148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 227 (406)
+.....+.+-|.++.+...+....+ .-..+.++.+.+-.++++..+.
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~~~~--~~~~VY~m~~~P~DN~~~~~t~------------------------------- 169 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVANENN--NRGDVYHMDQHPTDNTLIVVTR------------------------------- 169 (609)
T ss_pred CCCcceeEeeecccceeeeeecccC--cccceeecccCCCCceEEEEec-------------------------------
Confidence 6555668888887765433332211 1124566777776666665432
Q ss_pred CCCeEEEEeCCCCe----EEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee--cCCCCCC---
Q 015463 228 DTGRVLKYDPTTKQ----TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--ILPGYPD--- 298 (406)
Q Consensus 228 ~~g~l~~~d~~t~~----~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~--~l~g~pd--- 298 (406)
.++|..+|....+ ...++..-..-..+.+.|..-.|+.+....+++-.+++.-+ ...++. -..|+|.
T Consensus 170 -~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~---~~~~~~~~~~~~L~~~~~ 245 (609)
T KOG4227|consen 170 -AKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ---ARPVYQRSMFKGLPQENT 245 (609)
T ss_pred -CceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc---cchHHhhhccccCcccch
Confidence 3566666654332 11112111222344566655556555555555555554311 111211 1123443
Q ss_pred ---ceEECCCCCEEEEEccC
Q 015463 299 ---NVRTNEKGEFWVAIHCR 315 (406)
Q Consensus 299 ---~i~~d~~G~lwv~~~~~ 315 (406)
+....+.|+-+.++..+
T Consensus 246 ~~M~~~~~~~G~Q~msiRR~ 265 (609)
T KOG4227|consen 246 EWMGSLWSPSGNQFMSIRRG 265 (609)
T ss_pred hhhheeeCCCCCeehhhhcc
Confidence 34567777766666544
No 306
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=67.67 E-value=1.7e+02 Score=30.84 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=68.8
Q ss_pred CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-c---eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-K---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK 141 (406)
Q Consensus 66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~ 141 (406)
|.-..-.++.+.+.+..|.+++.|..+..|.++ . |......+. +....+.=+|-.+.+
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe-----------------~gg~a~GF~g~lw~~- 326 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE-----------------VGGSAGGFWGGLWSP- 326 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeec-----------------ccccccceeeEEEcC-
Confidence 444455677888888668999999999999877 2 554443321 111122245667787
Q ss_pred CCcEEEEeCCC-cEEEEe-CCCCeEEEcccccCCcccccccceEEcCCCCEEEEeC
Q 015463 142 TGDLYIADAYF-GLMKVG-PEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS 195 (406)
Q Consensus 142 ~g~L~Vad~~~-gl~~~d-~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~ 195 (406)
+++.+|+..+. |...+- .+....... ...+.-...+.+++-++.|.++++.+
T Consensus 327 n~~~ii~~g~~Gg~hlWkt~d~~~w~~~--~~iSGH~~~V~dv~W~psGeflLsvs 380 (764)
T KOG1063|consen 327 NSNVIIAHGRTGGFHLWKTKDKTFWTQE--PVISGHVDGVKDVDWDPSGEFLLSVS 380 (764)
T ss_pred CCCEEEEecccCcEEEEeccCccceeec--cccccccccceeeeecCCCCEEEEec
Confidence 78899998774 455554 222222211 11222345688999999999999875
No 307
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=66.87 E-value=1.5e+02 Score=30.07 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=12.4
Q ss_pred cccceEEcC-CCCEEEEe
Q 015463 178 FTNDLDIDD-EGNVYFTD 194 (406)
Q Consensus 178 ~~~~l~~d~-dG~ly~t~ 194 (406)
..|++..++ ++.|.++.
T Consensus 272 H~Nsi~yd~~dd~iivSs 289 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSS 289 (477)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred ccCccEEeCCCCeEEEEc
Confidence 468888887 67787775
No 308
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=66.54 E-value=40 Score=34.08 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=33.8
Q ss_pred CCeEEEEeCCCCeEEEecccCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 229 TGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 229 ~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
.|-+-.||.-+.+.+..+.++..+ -+|.++.+|++++.+ ...-|...++.
T Consensus 582 kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaT--Ck~yllL~d~~ 632 (776)
T COG5167 582 KGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILAT--CKNYLLLTDVP 632 (776)
T ss_pred CCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEe--ecceEEEEecc
Confidence 466777887766666666555443 578899999987653 35677777655
No 309
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=65.63 E-value=43 Score=34.70 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=62.3
Q ss_pred CCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463 130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN 208 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~ 208 (406)
.+..++++.++ +|++...-.. +.|..++|..++-... .. .|.....--.|...-||++.+...-.+..
T Consensus 720 tdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~-Eg-~gpvgtRgARi~wacdgr~viv~Gfdk~S-------- 788 (1012)
T KOG1445|consen 720 TDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVY-EG-KGPVGTRGARILWACDGRIVIVVGFDKSS-------- 788 (1012)
T ss_pred cCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccc-cC-CCCccCcceeEEEEecCcEEEEecccccc--------
Confidence 35588999999 7876644443 4588888876643222 11 12111222345555677766654221110
Q ss_pred ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEe----cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL----LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~----~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
.-.|..||.++-....+ ++-...+---.+++|.+.++++.-+...|+.|.+-
T Consensus 789 --------------------eRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 789 --------------------ERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred --------------------hhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 11244455443221111 11111111122556888888888777788888765
No 310
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=65.06 E-value=1.6e+02 Score=29.83 Aligned_cols=178 Identities=17% Similarity=0.051 Sum_probs=88.8
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE-EeC
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI-ADA 150 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V-ad~ 150 (406)
-++++. +..+-+|+.++.|...+.....+.... +.......-|+.+.+ +++... +..
T Consensus 264 g~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~-------------------~~~H~qeVCgLkws~-d~~~lASGgn 321 (484)
T KOG0305|consen 264 GSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST-------------------LQGHRQEVCGLKWSP-DGNQLASGGN 321 (484)
T ss_pred EEEecc--CceEEEecCCCcEEEEEEecchhhhhh-------------------hhcccceeeeeEECC-CCCeeccCCC
Confidence 455554 444777888888888775411111000 000112234678887 555443 333
Q ss_pred CCcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463 151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT 229 (406)
Q Consensus 151 ~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 229 (406)
++.++.+|............. ...+-.++..+ ...|..+.. +..+
T Consensus 322 DN~~~Iwd~~~~~p~~~~~~H----~aAVKA~awcP~q~~lLAsGG------------------------------Gs~D 367 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFTFTEH----TAAVKALAWCPWQSGLLATGG------------------------------GSAD 367 (484)
T ss_pred ccceEeccCCCccccEEEecc----ceeeeEeeeCCCccCceEEcC------------------------------CCcc
Confidence 367888886332211111111 11244556665 234444432 4446
Q ss_pred CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEe-CCCC--eEEEEEeeCCCCcceeeeecCCCCCCc---eEEC
Q 015463 230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCE-GSVG--RLHKYWLIGEKAGNLEAFAILPGYPDN---VRTN 303 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~-t~~~--~i~~~~~~g~~~~~~~~~~~l~g~pd~---i~~d 303 (406)
+.+..+|..+++...-.+.-...-.+.+++..+-++.+. ...+ .||+|.. ......+.|...- ++..
T Consensus 368 ~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-------~~~~~~l~gH~~RVl~la~S 440 (484)
T KOG0305|consen 368 RCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-------MKLVAELLGHTSRVLYLALS 440 (484)
T ss_pred cEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-------cceeeeecCCcceeEEEEEC
Confidence 778888888876654444444455678888775554443 2233 4555532 1222233443332 4567
Q ss_pred CCCCEEEEE
Q 015463 304 EKGEFWVAI 312 (406)
Q Consensus 304 ~~G~lwv~~ 312 (406)
+||...+..
T Consensus 441 Pdg~~i~t~ 449 (484)
T KOG0305|consen 441 PDGETIVTG 449 (484)
T ss_pred CCCCEEEEe
Confidence 777744443
No 311
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=64.67 E-value=1.8e+02 Score=30.04 Aligned_cols=50 Identities=22% Similarity=0.184 Sum_probs=36.0
Q ss_pred EEEEEECCCCCEEEEEEC-CCCCeeeceeEEEEeCCEEEEecCCC-CeEEEEeCC
Q 015463 354 AMAVKYSPEGKILQVLED-SKGKVVKAISEVEEKDGKLWMGSVLM-PFVAVYDLS 406 (406)
Q Consensus 354 ~~v~~~d~~g~~~~~~~~-~~g~~~~~~s~~~~~~g~Ly~Gs~~~-~~i~~~~~~ 406 (406)
..+.-+|++-+++-.+.+ ..|. .+.++...+++.|+-++.. +-+..+||+
T Consensus 304 N~lyVLD~~L~~vG~l~~la~gE---~IysvRF~Gd~~Y~VTFrqvDPLfviDLs 355 (521)
T PF09826_consen 304 NNLYVLDEDLKIVGSLEGLAPGE---RIYSVRFMGDRAYLVTFRQVDPLFVIDLS 355 (521)
T ss_pred EEEEEECCCCcEeEEccccCCCc---eEEEEEEeCCeEEEEEEeecCceEEEECC
Confidence 346667888777777654 3333 5788888889999998876 667777764
No 312
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=64.13 E-value=1.6e+02 Score=30.13 Aligned_cols=98 Identities=13% Similarity=0.016 Sum_probs=55.3
Q ss_pred ccccccceeccC-cccCc-ceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCC
Q 015463 55 NLLQNSEIKFLN-QIQGP-ESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICG 131 (406)
Q Consensus 55 ~~l~~~~~~~~~-~~~gp-e~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (406)
+.-...+.++.- .-.|| -++++.+++...|+|++||.|..|+.. ...++-.-.+....- .......
T Consensus 329 s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~-----------~l~Ghtd 397 (577)
T KOG0642|consen 329 SAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG-----------TLLGHTD 397 (577)
T ss_pred ccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc-----------ceecccc
Confidence 333344444442 33566 566777888889999999999999532 111110000000000 0011123
Q ss_pred cceEEEEeCCCCcEEEEeCCCcEEEEeCCCCe
Q 015463 132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGL 163 (406)
Q Consensus 132 ~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~ 163 (406)
..++++++....+|..+++.+.++.+++....
T Consensus 398 avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 398 AVWLLALSSTKDRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred ceeeeeecccccceeeecCCceEEeeccCCcC
Confidence 35688888756788888887778888776543
No 313
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=63.80 E-value=30 Score=21.43 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463 363 GKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405 (406)
Q Consensus 363 g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~ 405 (406)
|+++..+... +. ..++....+|.||+++. +..+..+|.
T Consensus 1 G~~~W~~~~~-~~---~~~~~~v~~g~vyv~~~-dg~l~ald~ 38 (40)
T PF13570_consen 1 GKVLWSYDTG-GP---IWSSPAVAGGRVYVGTG-DGNLYALDA 38 (40)
T ss_dssp S-EEEEEE-S-S------S--EECTSEEEEE-T-TSEEEEEET
T ss_pred CceeEEEECC-CC---cCcCCEEECCEEEEEcC-CCEEEEEeC
Confidence 4556665432 21 22444567899999998 667777775
No 314
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=63.48 E-value=1.2e+02 Score=27.90 Aligned_cols=83 Identities=20% Similarity=0.405 Sum_probs=48.5
Q ss_pred eEEEEeCCCCeEEEecc-------cCCCcceEEEecCCC---EEEEEeCCCCeEEEEEeeCCCCcce--eeee--cCCCC
Q 015463 231 RVLKYDPTTKQTTVLLR-------NLQFPNGLSLSKDKS---FFVFCEGSVGRLHKYWLIGEKAGNL--EAFA--ILPGY 296 (406)
Q Consensus 231 ~l~~~d~~t~~~~~~~~-------~~~~~ngi~l~~d~~---~l~v~~t~~~~i~~~~~~g~~~~~~--~~~~--~l~g~ 296 (406)
.+|.+||+++.++.+.+ ++..+.|+++..+.+ +..+.....+-+..|.+.....|.. +.+. .++-.
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQ 206 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQ 206 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCc
Confidence 37888998877776543 355678999887644 3333333456777787663222221 1111 23333
Q ss_pred CCceEE-CCCCCEEEEEc
Q 015463 297 PDNVRT-NEKGEFWVAIH 313 (406)
Q Consensus 297 pd~i~~-d~~G~lwv~~~ 313 (406)
..|+.. |..|.+||+--
T Consensus 207 TEG~VaDdEtG~LYIaeE 224 (364)
T COG4247 207 TEGMVADDETGFLYIAEE 224 (364)
T ss_pred ccceeeccccceEEEeec
Confidence 456655 46688999853
No 315
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=63.11 E-value=2.1e+02 Score=30.47 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=44.5
Q ss_pred CeEEEEeCCCCeEE-EecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee--CCC--------Ccceeeee-cCCCCC
Q 015463 230 GRVLKYDPTTKQTT-VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI--GEK--------AGNLEAFA-ILPGYP 297 (406)
Q Consensus 230 g~l~~~d~~t~~~~-~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~--g~~--------~~~~~~~~-~l~g~p 297 (406)
+.+-.+|.++.... +....-....++++.+ + +.++......+..|++. .++ ......|. ...|.+
T Consensus 171 s~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~-~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~ 247 (888)
T KOG0306|consen 171 SMIKFWDLETQHCFETHVDHRGEIWALVLDE--K-LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGRE 247 (888)
T ss_pred ceEEEEecccceeeeEEecccceEEEEEEec--c-eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCce
Confidence 55777788877643 3333334456777765 3 34444445555555553 211 11112232 234568
Q ss_pred CceEECCCCCEEEEEc
Q 015463 298 DNVRTNEKGEFWVAIH 313 (406)
Q Consensus 298 d~i~~d~~G~lwv~~~ 313 (406)
.+++.|.++++.+.-.
T Consensus 248 i~l~~d~s~r~~~c~g 263 (888)
T KOG0306|consen 248 INLVTDFSDRFLVCQG 263 (888)
T ss_pred eEEeecCcccEEEEec
Confidence 8899999888666643
No 316
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=62.08 E-value=1.7e+02 Score=28.98 Aligned_cols=108 Identities=16% Similarity=0.100 Sum_probs=59.0
Q ss_pred EEEEeCCCCcEEEEeC------------CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhh
Q 015463 135 GLRFDKKTGDLYIADA------------YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRR 202 (406)
Q Consensus 135 gi~~d~~~g~L~Vad~------------~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~ 202 (406)
.++.-+ .|.||+-.. +.-++.++..+.+.+.+... .+.....-..++.-+.--|.|+-.... .+
T Consensus 126 q~va~~-s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~-g~PS~RSGHRMvawK~~lilFGGFhd~--nr 201 (521)
T KOG1230|consen 126 QAVAVP-SNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG-GGPSPRSGHRMVAWKRQLILFGGFHDS--NR 201 (521)
T ss_pred eeEEec-cCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC-CCCCCCccceeEEeeeeEEEEcceecC--CC
Confidence 344444 567777431 23488899888887776433 232233344456555656667643211 11
Q ss_pred ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCc---ce--EEEecCCCEEEEEe
Q 015463 203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP---NG--LSLSKDKSFFVFCE 268 (406)
Q Consensus 203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~---ng--i~l~~d~~~l~v~~ 268 (406)
+| ++ -+-||+||.++=+...+...-..| .| ++.+|++..+++-.
T Consensus 202 ~y------------------~Y----yNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 202 DY------------------IY----YNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred ce------------------EE----eeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence 11 00 145999999987776664433222 23 55667777655543
No 317
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=61.80 E-value=67 Score=30.81 Aligned_cols=182 Identities=15% Similarity=0.190 Sum_probs=90.5
Q ss_pred cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463 69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (406)
Q Consensus 69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va 148 (406)
.|.-++..| |+. +..|..|..|-.||.+... |- +....+ .|..+.+.+|. ++.|.
T Consensus 198 kgVYClQYD-D~k-iVSGlrDnTikiWD~n~~~------------c~-------~~L~GH-tGSVLCLqyd~---rviis 252 (499)
T KOG0281|consen 198 KGVYCLQYD-DEK-IVSGLRDNTIKIWDKNSLE------------CL-------KILTGH-TGSVLCLQYDE---RVIVS 252 (499)
T ss_pred CceEEEEec-chh-hhcccccCceEEeccccHH------------HH-------HhhhcC-CCcEEeeeccc---eEEEe
Confidence 455566665 344 7888889988888876111 10 001112 35566666653 46665
Q ss_pred eC-CCcEEEEeCCCCeEEE-cccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463 149 DA-YFGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT 226 (406)
Q Consensus 149 d~-~~gl~~~d~~~~~~~~-l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 226 (406)
.+ ...+..+|.++|+... +...- . .+-.+.+. +| +.++.+..
T Consensus 253 GSSDsTvrvWDv~tge~l~tlihHc-e----aVLhlrf~-ng-~mvtcSkD----------------------------- 296 (499)
T KOG0281|consen 253 GSSDSTVRVWDVNTGEPLNTLIHHC-E----AVLHLRFS-NG-YMVTCSKD----------------------------- 296 (499)
T ss_pred cCCCceEEEEeccCCchhhHHhhhc-c----eeEEEEEe-CC-EEEEecCC-----------------------------
Confidence 44 4678889988886321 11100 0 12233332 33 44444321
Q ss_pred CCCCeEEEEeCCCCe-EE-EecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEEC-
Q 015463 227 KDTGRVLKYDPTTKQ-TT-VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN- 303 (406)
Q Consensus 227 ~~~g~l~~~d~~t~~-~~-~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d- 303 (406)
..-+++..+..+.. .+ ++.......|.+.++ .+ +.|+.++...|..++.. +.+.+..+.|.-.||+.-
T Consensus 297 -rsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~k-yIVsASgDRTikvW~~s-----t~efvRtl~gHkRGIAClQ 367 (499)
T KOG0281|consen 297 -RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGDRTIKVWSTS-----TCEFVRTLNGHKRGIACLQ 367 (499)
T ss_pred -ceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cc-eEEEecCCceEEEEecc-----ceeeehhhhcccccceehh
Confidence 11234443322211 11 122333445666664 44 44555544444444432 223333577888899864
Q ss_pred CCCCEEEEEccCCcchh
Q 015463 304 EKGEFWVAIHCRRSLYS 320 (406)
Q Consensus 304 ~~G~lwv~~~~~~~~~~ 320 (406)
-+|++-|+..+..+...
T Consensus 368 Yr~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 368 YRDRLVVSGSSDNTIRL 384 (499)
T ss_pred ccCeEEEecCCCceEEE
Confidence 35778887766655433
No 318
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=61.19 E-value=1.9e+02 Score=29.16 Aligned_cols=50 Identities=16% Similarity=0.057 Sum_probs=26.0
Q ss_pred CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+.|..||.++++...-.+ ......|.++++++.+.+.....--|.+++.+
T Consensus 126 ~~i~~yDw~~~~~i~~i~-v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 126 DFICFYDWETGKLIRRID-VSAVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp TEEEEE-TTT--EEEEES-S-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred CCEEEEEhhHcceeeEEe-cCCCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 459999998876543332 11236788999998877764433345555544
No 319
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=60.83 E-value=2e+02 Score=29.42 Aligned_cols=85 Identities=11% Similarity=0.087 Sum_probs=41.5
Q ss_pred cCCCCeEEEEeCCCCeEEEecccCCCcceEE--EecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEEC
Q 015463 226 TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLS--LSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 303 (406)
Q Consensus 226 ~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~--l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d 303 (406)
+++.|.++.|+...|+++.....-..++++. ++.+.-..+.+-....++-.+..+.. .-..++...+-.+.++++.
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--~~~~~~~~~~~~~~sl~is 153 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--VIIRIWKEQKPLVSSLCIS 153 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc--eeeeeeccCCCccceEEEc
Confidence 5667889999999998877654333332221 22222222222222223333332210 0111121122346788888
Q ss_pred CCCCEEEEE
Q 015463 304 EKGEFWVAI 312 (406)
Q Consensus 304 ~~G~lwv~~ 312 (406)
+||.+.+..
T Consensus 154 ~D~~~l~~a 162 (541)
T KOG4547|consen 154 PDGKILLTA 162 (541)
T ss_pred CCCCEEEec
Confidence 888866643
No 320
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=60.31 E-value=1.6e+02 Score=28.03 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=40.7
Q ss_pred eEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCc-EEEEeCCC
Q 015463 83 PYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEG 161 (406)
Q Consensus 83 ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~g-l~~~d~~~ 161 (406)
|..+..||.|..|+.+.|..+...- ...++..+|++.| .|.|-++-.+.+ |..+|.-.
T Consensus 100 LlS~sdDG~i~iw~~~~W~~~~slK--------------------~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSWELLKSLK--------------------AHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred eeeecCCCcEEEEEcCCeEEeeeec--------------------ccccccceeEecC-CCceEEEEcCCceeeeehhhc
Confidence 8889999999999988665442211 1135578899999 888887766544 44556554
Q ss_pred Ce
Q 015463 162 GL 163 (406)
Q Consensus 162 ~~ 163 (406)
|+
T Consensus 159 Gr 160 (362)
T KOG0294|consen 159 GR 160 (362)
T ss_pred Cc
Confidence 44
No 321
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.79 E-value=1.6e+02 Score=27.76 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=32.7
Q ss_pred CCcceEEEEeCCCCcEEEEeCC----CcEEEEeCCCCeEEEcccc
Q 015463 130 CGRPLGLRFDKKTGDLYIADAY----FGLMKVGPEGGLATSLATE 170 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~Vad~~----~gl~~~d~~~~~~~~l~~~ 170 (406)
.|....|..|+-+++|++|-.+ -||+++|.++++.+.+...
T Consensus 105 aGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ 149 (339)
T PF09910_consen 105 AGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSN 149 (339)
T ss_pred ccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCC
Confidence 4556678888888899998765 3899999999998887543
No 322
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=58.16 E-value=2.3e+02 Score=29.22 Aligned_cols=121 Identities=16% Similarity=0.224 Sum_probs=62.7
Q ss_pred cEEEEeCCCCeEEEccc-ccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463 153 GLMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG 230 (406)
Q Consensus 153 gl~~~d~~~~~~~~l~~-~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g 230 (406)
.|++|+.++++++.... ..+|. ..|...+|. +|.+=+++....+-.. . + ....+
T Consensus 249 ~I~kf~~~~~~~~y~~sg~V~G~---llnqFsmdE~~G~LRvaTT~~~~~~~-~-----------~---------~~s~N 304 (521)
T PF09826_consen 249 TIYKFALDGGKIEYVGSGSVPGY---LLNQFSMDEYDGYLRVATTSGNWWWD-S-----------E---------DTSSN 304 (521)
T ss_pred EEEEEEccCCcEEEEEEEEECcE---EcccccEeccCCEEEEEEecCccccc-C-----------C---------CCceE
Confidence 37777777776665432 23332 356667776 6777777654221000 0 0 22346
Q ss_pred eEEEEeCCCCeEEEecccCCCc---ceEEEecCCCEEEEEeCC-CCeEEEEEeeCCCCcceeeee--cCCCCCCceEE
Q 015463 231 RVLKYDPTTKQTTVLLRNLQFP---NGLSLSKDKSFFVFCEGS-VGRLHKYWLIGEKAGNLEAFA--ILPGYPDNVRT 302 (406)
Q Consensus 231 ~l~~~d~~t~~~~~~~~~~~~~---ngi~l~~d~~~l~v~~t~-~~~i~~~~~~g~~~~~~~~~~--~l~g~pd~i~~ 302 (406)
.|+.+|.+-+.+-. .+++..- .++.+- |+..|++.-. -.-++.++++.++. .++.. ..||+.+=+..
T Consensus 305 ~lyVLD~~L~~vG~-l~~la~gE~IysvRF~--Gd~~Y~VTFrqvDPLfviDLsdP~~--P~vlGeLKIPGfS~YLHP 377 (521)
T PF09826_consen 305 NLYVLDEDLKIVGS-LEGLAPGERIYSVRFM--GDRAYLVTFRQVDPLFVIDLSDPAN--PKVLGELKIPGFSDYLHP 377 (521)
T ss_pred EEEEECCCCcEeEE-ccccCCCceEEEEEEe--CCeEEEEEEeecCceEEEECCCCCC--CceeeEEECccchhceeE
Confidence 79999854333222 2333211 233332 4445555321 24688888886643 33443 46887665554
No 323
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=58.14 E-value=32 Score=21.99 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCcEEEEeCCCcEEEEeCCC
Q 015463 133 PLGLRFDKKTGDLYIADAYFGLMKVGPEG 161 (406)
Q Consensus 133 p~gi~~d~~~g~L~Vad~~~gl~~~d~~~ 161 (406)
..++.+. ++.+||++...||..+|...
T Consensus 4 a~~v~v~--g~yaYva~~~~Gl~IvDISn 30 (42)
T PF08309_consen 4 ARDVAVS--GNYAYVADGNNGLVIVDISN 30 (42)
T ss_pred EEEEEEE--CCEEEEEeCCCCEEEEECCC
Confidence 4566666 57899999889999999764
No 324
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=58.04 E-value=16 Score=22.50 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=16.2
Q ss_pred CcEEEEeCCCcEEEEeCCCCeE
Q 015463 143 GDLYIADAYFGLMKVGPEGGLA 164 (406)
Q Consensus 143 g~L~Vad~~~gl~~~d~~~~~~ 164 (406)
|.+|+++..+.|+.+|.++|++
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~ 22 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKV 22 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSE
T ss_pred CEEEEeCCCCEEEEEECCCCCE
Confidence 4577776666788888888864
No 325
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=57.41 E-value=1.4e+02 Score=32.05 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=42.0
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCc-ceEEEEeCCCCcEE-EE
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGR-PLGLRFDKKTGDLY-IA 148 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~d~~~g~L~-Va 148 (406)
-++++.++|..||.|.+++-+++|..+ .-++|. +..+. ..++.+.+ ++++| +.
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfL-----------------------PRLgs~I~~i~vS~-ds~~~sl~ 310 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFL-----------------------PRLGSPILHIVVSP-DSDLYSLV 310 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCCcccc-----------------------cccCCeeEEEEEcC-CCCeEEEE
Confidence 467788899889999999988888765 222221 11233 46889998 67665 34
Q ss_pred eCCCcEEEEeC
Q 015463 149 DAYFGLMKVGP 159 (406)
Q Consensus 149 d~~~gl~~~d~ 159 (406)
..++.|..+..
T Consensus 311 ~~DNqI~li~~ 321 (792)
T KOG1963|consen 311 LEDNQIHLIKA 321 (792)
T ss_pred ecCceEEEEec
Confidence 44566666654
No 326
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=56.54 E-value=2.7e+02 Score=29.46 Aligned_cols=150 Identities=11% Similarity=0.014 Sum_probs=78.8
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCCc--eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC-----CCc
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-----TGD 144 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~-----~g~ 144 (406)
-+-++..||..+-.|..+|.|-.-+..+ -..+-..+.. ....++|++.+. ++.
T Consensus 136 ~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~--------------------Nspiwsi~~~p~sg~G~~di 195 (1081)
T KOG1538|consen 136 ICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGS--------------------NSPIWSICWNPSSGEGRNDI 195 (1081)
T ss_pred EEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCC--------------------CCCceEEEecCCCCCCccce
Confidence 3556778999777889999886655441 1111111100 111357777653 235
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEcccccCCccc-ccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463 145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPL-RFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI 223 (406)
Q Consensus 145 L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~-~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 223 (406)
+-|+|+...|..+..++..+.. ...+ ..|..+.--.+|....-
T Consensus 196 ~aV~DW~qTLSFy~LsG~~Igk------~r~L~FdP~CisYf~NGEy~Li------------------------------ 239 (1081)
T KOG1538|consen 196 LAVADWGQTLSFYQLSGKQIGK------DRALNFDPCCISYFTNGEYILL------------------------------ 239 (1081)
T ss_pred EEEEeccceeEEEEecceeecc------cccCCCCchhheeccCCcEEEE------------------------------
Confidence 7888887777777766543321 0111 12444444455543222
Q ss_pred cccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 224 KITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 224 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+..++.|-.|..++-.+-.+.+.-..-..+++.|+++++.+. .-.+.|-.|++.
T Consensus 240 --GGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~G-CqDGTiACyNl~ 293 (1081)
T KOG1538|consen 240 --GGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVG-CQDGTIACYNLI 293 (1081)
T ss_pred --ccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEE-EccCeeehhhhH
Confidence 222455666666543333333322334567777877765443 344666666654
No 327
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=54.92 E-value=1.8e+02 Score=28.01 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=33.9
Q ss_pred cCCCEEEEEeCCCCeEEEEEeeCCCCcceeee-ecCCC-----CCCceEECCCCCEEEEEccCC
Q 015463 259 KDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF-AILPG-----YPDNVRTNEKGEFWVAIHCRR 316 (406)
Q Consensus 259 ~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~-~~l~g-----~pd~i~~d~~G~lwv~~~~~~ 316 (406)
-||+.+++........+.+.++.-+.|..... .++.| ++-|+..-.+|++|++.-++.
T Consensus 141 fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~ 204 (442)
T PF15416_consen 141 FDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGG 204 (442)
T ss_pred CCCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCC
Confidence 37888777765443444444443334433222 23332 566777678999999987664
No 328
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=54.64 E-value=2e+02 Score=27.57 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=32.0
Q ss_pred CCeEEEEeCCCCeEEE-ecccCCCcceEEEecC--CCEEEEEeCCCCeEEEEEee
Q 015463 229 TGRVLKYDPTTKQTTV-LLRNLQFPNGLSLSKD--KSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 229 ~g~l~~~d~~t~~~~~-~~~~~~~~ngi~l~~d--~~~l~v~~t~~~~i~~~~~~ 280 (406)
+|.+-.||+.|++.-. +...-...||+.+..+ ...++.+ +..+.|..|++.
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~-ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISC-SSDGTVRLWDIR 102 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEe-ccCCeEEEEEee
Confidence 4789999999875422 2222334578887763 3444444 456788888865
No 329
>smart00284 OLF Olfactomedin-like domains.
Probab=53.74 E-value=1.8e+02 Score=26.78 Aligned_cols=110 Identities=20% Similarity=0.226 Sum_probs=61.1
Q ss_pred eEEEEeCCCCcEEEEeCC---Cc---EEEEeCCCCeEEE-cccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccc
Q 015463 134 LGLRFDKKTGDLYIADAY---FG---LMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQK 206 (406)
Q Consensus 134 ~gi~~d~~~g~L~Vad~~---~g---l~~~d~~~~~~~~-l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~ 206 (406)
..+++| +.-|||.-+. .| |.++|+++=.++. ..+...- -..-+.+.+ -|.||++++.
T Consensus 131 iDlAvD--E~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k--~sa~naFmv--CGvLY~~~s~---------- 194 (255)
T smart00284 131 IDLAVD--ENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNK--RSASNAFMI--CGILYVTRSL---------- 194 (255)
T ss_pred EEEEEc--CCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCc--ccccccEEE--eeEEEEEccC----------
Confidence 356666 4568887332 23 4588887654432 2222111 112233333 5899999852
Q ss_pred ccccccccccCCCCCCCcccCCCCe-EEEEeCCCCeEEEecccC----CCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 207 ENIPLQLCSSLNDPSPIKITKDTGR-VLKYDPTTKQTTVLLRNL----QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 207 ~~~~~~~~~e~~~~~~~~~~~~~g~-l~~~d~~t~~~~~~~~~~----~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
.....+ -+.||..+++.+...-.+ .....|...|-.+.||+-+ ++.+..|++.
T Consensus 195 -------------------~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd--ng~~l~Y~v~ 252 (255)
T smart00284 195 -------------------GSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN--NGHLVHYDIA 252 (255)
T ss_pred -------------------CCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe--CCeEEEEEEE
Confidence 112233 578999887654432111 2233577788888888876 4577777764
No 330
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=53.67 E-value=1.6e+02 Score=28.79 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=43.3
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCC
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY 151 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~ 151 (406)
-+++++..++.+|.|-..|.+.+-+-..-+.+.... -+..-|..++|...|-++.+.+.+..
T Consensus 109 F~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~------------------~~~~~~~VY~m~~~P~DN~~~~~t~~ 170 (609)
T KOG4227|consen 109 FSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVAN------------------ENNNRGDVYHMDQHPTDNTLIVVTRA 170 (609)
T ss_pred EEEEEccCCeeEecCCCcceeEeeecccceeeeeec------------------ccCcccceeecccCCCCceEEEEecC
Confidence 478888888889999989988887765212211110 01123557888888843344444444
Q ss_pred CcEEEEeCCC
Q 015463 152 FGLMKVGPEG 161 (406)
Q Consensus 152 ~gl~~~d~~~ 161 (406)
+.+..+|...
T Consensus 171 ~~V~~~D~Rd 180 (609)
T KOG4227|consen 171 KLVSFIDNRD 180 (609)
T ss_pred ceEEEEeccC
Confidence 5567777543
No 331
>KOG4328 consensus WD40 protein [Function unknown]
Probab=53.64 E-value=1.9e+02 Score=28.88 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=56.8
Q ss_pred ceEEEEeCCCCcEEEEeCCCc-EEEEeCCCCeEEEcccccCCcccccccceEEc-CCCCEEEEeCCCchhhhcccccccc
Q 015463 133 PLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDID-DEGNVYFTDSSTNYQRRQMQKENIP 210 (406)
Q Consensus 133 p~gi~~d~~~g~L~Vad~~~g-l~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d-~dG~ly~t~~~~~~~~~~~~~~~~~ 210 (406)
..+|.|.+.+-.-+.+.++.| |...|.++...+.+.+..+.. ....++.+. .++.+++++.
T Consensus 237 Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~--~~fs~~d~~~e~~~vl~~~~--------------- 299 (498)
T KOG4328|consen 237 VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN--IWFSSLDFSAESRSVLFGDN--------------- 299 (498)
T ss_pred ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccc--eeeeeccccCCCccEEEeec---------------
Confidence 457888885444444445545 555677766555444331111 112233332 2456666652
Q ss_pred ccccccCCCCCCCcccCCCCeEEEEeCCCCeEEE--ecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 211 LQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTV--LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 211 ~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~--~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
-|.+-.+|..++..+. +.-.-...+++++.|-...++.+....+....|++.
T Consensus 300 ------------------~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 300 ------------------VGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred ------------------ccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehh
Confidence 1445556655554322 211112457888888777666655444444445543
No 332
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=52.85 E-value=2e+02 Score=26.85 Aligned_cols=45 Identities=7% Similarity=-0.001 Sum_probs=22.5
Q ss_pred CeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCEEEEEccCCcc
Q 015463 272 GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSL 318 (406)
Q Consensus 272 ~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~~~~ 318 (406)
..+..+.+++...+....+.++. -+...++.|+++-+.....+.+
T Consensus 138 ht~k~~~~~~~s~~~~~h~~~~~--~ns~~~snd~~~~~~Vgds~~V 182 (344)
T KOG4532|consen 138 HTGKTMVVSGDSNKFAVHNQNLT--QNSLHYSNDPSWGSSVGDSRRV 182 (344)
T ss_pred cceeEEEEecCcccceeeccccc--eeeeEEcCCCceEEEecCCCcc
Confidence 44555555544333222221111 2346678888877766655443
No 333
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=52.72 E-value=2.3e+02 Score=27.57 Aligned_cols=51 Identities=22% Similarity=0.437 Sum_probs=28.6
Q ss_pred CCcEEEEeCC------------CcEEEEeCCCCeEEEcccccCCcccccccceEEc-CCCCEEEEeC
Q 015463 142 TGDLYIADAY------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID-DEGNVYFTDS 195 (406)
Q Consensus 142 ~g~L~Vad~~------------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d-~dG~ly~t~~ 195 (406)
++.|||.-.. ..+++||+.+.+.+.+.... +.......++. -++.||+--.
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~---p~~~~~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS---PVGLAGHVAVSLHNGKAYITGG 147 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC---CCcccceEEEEeeCCEEEEECC
Confidence 5788886432 23889999888777654311 11111112222 4789998753
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.29 E-value=3.1e+02 Score=28.70 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=26.1
Q ss_pred ceeccCcccCcceEEEcCC-CCeeEEEecCCEEEEEeCC
Q 015463 61 EIKFLNQIQGPESMAFDPL-GRGPYTGVADGRILFWDGL 98 (406)
Q Consensus 61 ~~~~~~~~~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~ 98 (406)
+..++|.-+..-.+++.|+ .+.+-.++-|..|..|...
T Consensus 133 ~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg 171 (794)
T KOG0276|consen 133 EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG 171 (794)
T ss_pred eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcC
Confidence 4566666666677888864 4545567888888888754
No 335
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=50.83 E-value=2.2e+02 Score=26.89 Aligned_cols=110 Identities=13% Similarity=0.070 Sum_probs=56.9
Q ss_pred ceEEEEeCCCCcEEEEeCC-CcEEEEeCCC-CeEEEcc-cccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccc
Q 015463 133 PLGLRFDKKTGDLYIADAY-FGLMKVGPEG-GLATSLA-TEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENI 209 (406)
Q Consensus 133 p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~-~~~~~l~-~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~ 209 (406)
.-.|+|++..+++.+|.+. +.+..++.+. |....-. ...++. +-+++...||+.-|+...
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~P----vL~v~WsddgskVf~g~~------------- 92 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGP----VLDVCWSDDGSKVFSGGC------------- 92 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCC----eEEEEEccCCceEEeecc-------------
Confidence 3468888866777767665 4454454432 2221101 111222 346778888854444321
Q ss_pred cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCC-CEEEEEeCCCCeEEEEE
Q 015463 210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDK-SFFVFCEGSVGRLHKYW 278 (406)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~-~~l~v~~t~~~~i~~~~ 278 (406)
++.+-.+|..++++..+...-.....+.+-+.. -.++++.+....|.-++
T Consensus 93 -------------------Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 93 -------------------DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred -------------------CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 366888899988887764222222233332222 23556666655554444
No 336
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=50.23 E-value=2.1e+02 Score=26.34 Aligned_cols=166 Identities=16% Similarity=0.082 Sum_probs=85.3
Q ss_pred CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--cee-EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT 142 (406)
Q Consensus 66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~ 142 (406)
-...|+-.++. +|.++|---....|+|+|.. .+. ............. ........=..+++| +
T Consensus 67 ~~~~GtG~vVY--ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~----------~y~~~~~t~iD~AvD--E 132 (250)
T PF02191_consen 67 YPWQGTGHVVY--NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRF----------PYYWSGYTDIDFAVD--E 132 (250)
T ss_pred ceeccCCeEEE--CCcEEEEecCCceEEEEECcCCcEEEEEECCcccccccc----------ceecCCCceEEEEEc--C
Confidence 34566666665 46645555556789999977 222 1111111100000 000001111356666 4
Q ss_pred CcEEEEeCC---Cc---EEEEeCCCCeEEE-cccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463 143 GDLYIADAY---FG---LMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS 215 (406)
Q Consensus 143 g~L~Vad~~---~g---l~~~d~~~~~~~~-l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~ 215 (406)
.-|||.-+. .| |.++|+++=.++. ..+.... ...-+.+. --|.||++++..
T Consensus 133 ~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k--~~~~naFm--vCGvLY~~~s~~------------------ 190 (250)
T PF02191_consen 133 NGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPK--RSAGNAFM--VCGVLYATDSYD------------------ 190 (250)
T ss_pred CCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCc--hhhcceee--EeeEEEEEEECC------------------
Confidence 568886332 33 5678887654432 2222111 11222222 358999998642
Q ss_pred cCCCCCCCcccCCCCe-EEEEeCCCCeEEEecccC----CCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 216 SLNDPSPIKITKDTGR-VLKYDPTTKQTTVLLRNL----QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 216 e~~~~~~~~~~~~~g~-l~~~d~~t~~~~~~~~~~----~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
....+ -+.||..+++.+...-.+ .....|...|-.+.||+-+. +.+..|++.
T Consensus 191 -----------~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~--G~~v~Y~v~ 247 (250)
T PF02191_consen 191 -----------TRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDN--GYQVTYDVR 247 (250)
T ss_pred -----------CCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEEC--CeEEEEEEE
Confidence 11133 478999888765432222 22345778888888988774 566777653
No 337
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=49.84 E-value=1.4e+02 Score=29.41 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=16.6
Q ss_pred CCcceEEEecCCCEEEEEeC
Q 015463 250 QFPNGLSLSKDKSFFVFCEG 269 (406)
Q Consensus 250 ~~~ngi~l~~d~~~l~v~~t 269 (406)
..|+-+++|-||+.|||+.+
T Consensus 389 GGPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 389 GGPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred CCceeEEeccCCcEEEEEch
Confidence 35777999999999999864
No 338
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=49.06 E-value=3.5e+02 Score=28.60 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=55.0
Q ss_pred cceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463 71 PESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (406)
Q Consensus 71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad 149 (406)
-++++.-+++. +.+|+.|..|..|..+ ..+.|.. | ..-.-|+++-+ +..+.-++
T Consensus 143 VWAv~~l~e~~-~vTgsaDKtIklWk~~~~l~tf~g----------------------H-tD~VRgL~vl~-~~~flScs 197 (745)
T KOG0301|consen 143 VWAVASLPENT-YVTGSADKTIKLWKGGTLLKTFSG----------------------H-TDCVRGLAVLD-DSHFLSCS 197 (745)
T ss_pred eeeeeecCCCc-EEeccCcceeeeccCCchhhhhcc----------------------c-hhheeeeEEec-CCCeEeec
Confidence 35555556664 8888888888888766 3333311 1 01134677665 55666665
Q ss_pred CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeC
Q 015463 150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS 195 (406)
Q Consensus 150 ~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~ 195 (406)
..+-|..++.++..+..+... -+++.++....++.+.+++.
T Consensus 198 NDg~Ir~w~~~ge~l~~~~gh-----tn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 198 NDGSIRLWDLDGEVLLEMHGH-----TNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred CCceEEEEeccCceeeeeecc-----ceEEEEEEecCCCCeEEEec
Confidence 544566777765544433221 24566677555666777764
No 339
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=48.64 E-value=1e+02 Score=29.96 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=26.3
Q ss_pred CeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 240 KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 240 ~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+..+..+..+..-..|++++|.++++.++.. ..|+..+..
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRD-EkIRvs~yp 181 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRD-EKIRVSRYP 181 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCC-ceEEEEecC
Confidence 4444445555566679999999998877654 456555543
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=48.27 E-value=1.1e+02 Score=31.50 Aligned_cols=70 Identities=17% Similarity=0.071 Sum_probs=49.9
Q ss_pred CcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE-EE
Q 015463 70 GPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YI 147 (406)
Q Consensus 70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L-~V 147 (406)
.+-+.+.+++...+.+|+.||.|..+|.. +.+..+.. .-.|.-++..+ +|.+ .|
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka-----------------------~~~P~~iaWHp-~gai~~V 316 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKA-----------------------EFIPTLIAWHP-DGAIFVV 316 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeee-----------------------cccceEEEEcC-CCcEEEE
Confidence 45677888888889999999999999987 55555432 12377889998 5655 45
Q ss_pred EeCCCcEEEEeCCCCe
Q 015463 148 ADAYFGLMKVGPEGGL 163 (406)
Q Consensus 148 ad~~~gl~~~d~~~~~ 163 (406)
++..+.|..||..-+.
T Consensus 317 ~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 317 GSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCceEEEEEeecCc
Confidence 5544568888865443
No 341
>PRK10115 protease 2; Provisional
Probab=48.09 E-value=3.8e+02 Score=28.72 Aligned_cols=145 Identities=7% Similarity=0.026 Sum_probs=0.0
Q ss_pred ccceEEcCCCC--EEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCe--EEEecccCCCcce
Q 015463 179 TNDLDIDDEGN--VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQ--TTVLLRNLQFPNG 254 (406)
Q Consensus 179 ~~~l~~d~dG~--ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~--~~~~~~~~~~~ng 254 (406)
+..+.+.+||+ .|..+.+ +...-.|+..|..+|. .+.+...- .+
T Consensus 129 l~~~~~Spdg~~la~~~d~~-----------------------------G~E~~~l~v~d~~tg~~l~~~i~~~~---~~ 176 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFL-----------------------------SRRQYGIRFRNLETGNWYPELLDNVE---PS 176 (686)
T ss_pred EeEEEECCCCCEEEEEecCC-----------------------------CcEEEEEEEEECCCCCCCCccccCcc---eE
Q ss_pred EEEecCCCEEEEEeCCCC-----eEEEEEeeCCCCcceeeeecCCCCCC-ceEECCCCCEEEEEccCCcchhhhhhcChh
Q 015463 255 LSLSKDKSFFVFCEGSVG-----RLHKYWLIGEKAGNLEAFAILPGYPD-NVRTNEKGEFWVAIHCRRSLYSHLMALYPK 328 (406)
Q Consensus 255 i~l~~d~~~l~v~~t~~~-----~i~~~~~~g~~~~~~~~~~~l~g~pd-~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~ 328 (406)
+++++|++.++++..... .||++++..+......+|.+..+... ......+|...+-....
T Consensus 177 ~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~------------- 243 (686)
T PRK10115 177 FVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS------------- 243 (686)
T ss_pred EEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC-------------
Q ss_pred hhhhhhccCccceeeeeEeecCcceEEEEEEC---CCCCEEEEEECCCCCeeeceeEEEEeCCEEEEec
Q 015463 329 IRHFLLKLPISAKTHYLIHVGGRLHAMAVKYS---PEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGS 394 (406)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d---~~g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs 394 (406)
....-+..++ ++++....+....+ ....+...++.+|+-+
T Consensus 244 ----------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ly~~t 286 (686)
T PRK10115 244 ----------------------ATTSEVLLLDAELADAEPFVFLPRRKD----HEYSLDHYQHRFYLRS 286 (686)
T ss_pred ----------------------CccccEEEEECcCCCCCceEEEECCCC----CEEEEEeCCCEEEEEE
No 342
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=47.52 E-value=64 Score=22.02 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=16.4
Q ss_pred eEEEEEECCCCCEEEEEECCCCC
Q 015463 353 HAMAVKYSPEGKILQVLEDSKGK 375 (406)
Q Consensus 353 ~~~v~~~d~~g~~~~~~~~~~g~ 375 (406)
...++|++++|.+-.+|. .+|.
T Consensus 28 ~~~l~Rln~DGsLDttFg-~~G~ 49 (55)
T TIGR02608 28 DFVLARLNADGSLDTTFG-TGGK 49 (55)
T ss_pred cEEEEEECCCCCccCCcC-CCcE
Confidence 346999999999988773 4554
No 343
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=47.44 E-value=57 Score=19.85 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=11.8
Q ss_pred CCCeEEEEeCCCCeEEEe
Q 015463 228 DTGRVLKYDPTTKQTTVL 245 (406)
Q Consensus 228 ~~g~l~~~d~~t~~~~~~ 245 (406)
..|.|+++++.++- .++
T Consensus 15 ~~GTvf~~~~~g~~-t~L 31 (34)
T TIGR03803 15 GFGTLYRLSTAGGT-TVL 31 (34)
T ss_pred CceeEEEEcCCCCe-EEE
Confidence 35889999998543 443
No 344
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.28 E-value=3.6e+02 Score=28.26 Aligned_cols=49 Identities=8% Similarity=-0.021 Sum_probs=32.8
Q ss_pred CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+.++.||-+++++..-.+ ..+..+.++.+|+.+.++.+...-|++|+.+
T Consensus 444 ~~~~fydW~~~~lVrrI~--v~~k~v~w~d~g~lVai~~d~Sfyil~~n~d 492 (794)
T KOG0276|consen 444 DFLCFYDWESGELVRRIE--VTSKHVYWSDNGELVAIAGDDSFYILKFNAD 492 (794)
T ss_pred CeEEEEEcccceEEEEEe--eccceeEEecCCCEEEEEecCceeEEEecHH
Confidence 567778877676543322 2455688888888887777666667777754
No 345
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=46.51 E-value=4.3e+02 Score=29.52 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred cceEEEEeCCCCcEEEEeCCCcE-----EEEeCCCCeEEEcccccCC---cccccccceEEcCCC-CEEEEeCCCchhhh
Q 015463 132 RPLGLRFDKKTGDLYIADAYFGL-----MKVGPEGGLATSLATEAEG---VPLRFTNDLDIDDEG-NVYFTDSSTNYQRR 202 (406)
Q Consensus 132 ~p~gi~~d~~~g~L~Vad~~~gl-----~~~d~~~~~~~~l~~~~~~---~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~ 202 (406)
...+.++|...+.++++...... ..-.......+.+.+-... .+...+-++..-.|. .+++...+
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~------ 96 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALAS------ 96 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECC------
Q ss_pred ccccccccccccccCCCCCCCcccCCCCeEEEE----eCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 015463 203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKY----DPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 278 (406)
Q Consensus 203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~----d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~ 278 (406)
|.++.+ ++.+.+++.+..--..-...++|||++.+.++ |+.+.+....
T Consensus 97 ---------------------------Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~v-T~~~~l~~mt 148 (928)
T PF04762_consen 97 ---------------------------GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALV-TGEGNLLLMT 148 (928)
T ss_pred ---------------------------ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEE-eCCCEEEEEe
Q ss_pred ee
Q 015463 279 LI 280 (406)
Q Consensus 279 ~~ 280 (406)
.+
T Consensus 149 ~~ 150 (928)
T PF04762_consen 149 RD 150 (928)
T ss_pred cc
No 346
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=45.61 E-value=3.7e+02 Score=27.87 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=85.3
Q ss_pred ccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCccccCCCCCcccccccCCcCCcc-eEEEEeC
Q 015463 64 FLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDK 140 (406)
Q Consensus 64 ~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~d~ 140 (406)
++|...+-.++++..-++.+++|+.|..+..||.. + -+.... +.. .+..++.
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-------------------------gh~stv~~~~~ 299 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ-------------------------GHTSSVRCLTI 299 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec-------------------------CCCceEEEEEc
Confidence 45666677888887656678999999999999855 2 111111 111 1223333
Q ss_pred CCCcEEEE-eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463 141 KTGDLYIA-DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND 219 (406)
Q Consensus 141 ~~g~L~Va-d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~ 219 (406)
.+.+.++ .....|..++.+++....+... ....++.+..+ +.+.|+.+.
T Consensus 300 -~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~----h~~~V~~v~~~--~~~lvsgs~----------------------- 349 (537)
T KOG0274|consen 300 -DPFLLVSGSRDNTVKVWDVTNGACLNLLRG----HTGPVNCVQLD--EPLLVSGSY----------------------- 349 (537)
T ss_pred -cCceEeeccCCceEEEEeccCcceEEEecc----ccccEEEEEec--CCEEEEEec-----------------------
Confidence 3333333 3446788888877765444332 12346667766 445554332
Q ss_pred CCCCcccCCCCeEEEEeCCCCeEEEecccCCC-cceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463 220 PSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF-PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 282 (406)
Q Consensus 220 ~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~-~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~ 282 (406)
+|.+..||+.+++......+... ...+.++.. +.+ ++......|..+++.+.
T Consensus 350 ---------d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~-~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 350 ---------DGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRL-LSGSLDTTIKVWDLRTK 402 (537)
T ss_pred ---------CceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceE-EeeeeccceEeecCCch
Confidence 36788888887776555444221 223444322 434 44444466777777643
No 347
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=45.06 E-value=4.6e+02 Score=28.90 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=66.4
Q ss_pred eccCcccCcceEEEcC-CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463 63 KFLNQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK 140 (406)
Q Consensus 63 ~~~~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~ 140 (406)
+...+...|+++++|- .++..|+......+...+.+ ..+.+.... . ...|-.+++++
T Consensus 474 ~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~--------------------~-l~~~r~~~v~p 532 (877)
T KOG1215|consen 474 LCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSK--------------------D-LDLPRSIAVDP 532 (877)
T ss_pred EeccCccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEec--------------------C-CCCccceeecc
Confidence 3455678999999994 45557777777666666543 222221110 1 13466788888
Q ss_pred CCCcEEEEeCCC--cEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCC
Q 015463 141 KTGDLYIADAYF--GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSS 196 (406)
Q Consensus 141 ~~g~L~Vad~~~--gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~ 196 (406)
..|-++..+.+. .+.+-..++.....+... ....+++++.|- +..+|..+..
T Consensus 533 ~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~----~~~~p~glt~d~~~~~~yw~d~~ 587 (877)
T KOG1215|consen 533 EKGLMFWTDWGQPPRIERASLDGSERAVLVTN----GILWPNGLTIDYETDRLYWADAK 587 (877)
T ss_pred ccCeeEEecCCCCchhhhhcCCCCCceEEEeC----CccCCCcceEEeecceeEEEccc
Confidence 778888887763 344544554444443322 145788999876 5689998853
No 348
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=44.74 E-value=2.3e+02 Score=30.16 Aligned_cols=71 Identities=25% Similarity=0.239 Sum_probs=47.5
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463 72 ESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (406)
Q Consensus 72 e~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va 148 (406)
-++++|+.-..+.++..|..|..++-. +.+.|.. + ....|.+.-+..|| .| +|++
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg-s-------------------~~~eG~lIKv~lDP-Sg-iY~a 657 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG-S-------------------RDHEGDLIKVILDP-SG-IYLA 657 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecc-c-------------------ccCCCceEEEEECC-Cc-cEEE
Confidence 578888887778888888888888765 2333321 1 11136677788888 55 5666
Q ss_pred eCC--CcEEEEeCCCCeE
Q 015463 149 DAY--FGLMKVGPEGGLA 164 (406)
Q Consensus 149 d~~--~gl~~~d~~~~~~ 164 (406)
++. +.|..+|--+|+.
T Consensus 658 tScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 658 TSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred EeecCCceEEEEeccchh
Confidence 553 6789999877753
No 349
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=44.07 E-value=2.8e+02 Score=26.13 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=43.0
Q ss_pred CCcEEEEeCC------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463 142 TGDLYIADAY------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS 215 (406)
Q Consensus 142 ~g~L~Vad~~------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~ 215 (406)
++.|||.-.. +.++++|+++.+.+.+... ...+ .....++.-++.||+-....
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~~--r~~~~~~~~~~~iYv~GG~~------------------ 181 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDF-PGEP--RVQPVCVKLQNELYVFGGGS------------------ 181 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCC-CCCC--CCcceEEEECCEEEEEcCCC------------------
Confidence 5788886432 3589999998877665422 1111 11223333467899864310
Q ss_pred cCCCCCCCcccCCCCeEEEEeCCCCeEEEec
Q 015463 216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLL 246 (406)
Q Consensus 216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~ 246 (406)
......+++||+++++.+.+.
T Consensus 182 ----------~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 182 ----------NIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred ----------CccccceEEEecCCCeeEECC
Confidence 000123789999998887664
No 350
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=43.64 E-value=2.6e+02 Score=27.30 Aligned_cols=114 Identities=20% Similarity=0.216 Sum_probs=67.4
Q ss_pred eEEEEeC-CCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCC-CCEEEEeCCCchhhhccccccccc
Q 015463 134 LGLRFDK-KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPL 211 (406)
Q Consensus 134 ~gi~~d~-~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~ 211 (406)
+||.+++ ..|.|.-+|..++|+...+.+|....=...+.+ --..+.+|.-.+. .+++++.+-
T Consensus 215 y~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~--------------- 278 (440)
T KOG0302|consen 215 YGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSC--------------- 278 (440)
T ss_pred eeeecccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeec---------------
Confidence 5666665 257788888888899988888765542222222 2235677877664 356666432
Q ss_pred cccccCCCCCCCcccCCCCeEEEEeCCCCeEEE--ec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463 212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTV--LL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~--~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g 281 (406)
+|.+-.+|...+..+. .. ..-...|-|.++.+.. ++.+....+.+..+++..
T Consensus 279 -----------------DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~ 333 (440)
T KOG0302|consen 279 -----------------DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQ 333 (440)
T ss_pred -----------------CceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhh
Confidence 3556667766552211 11 1112457788877665 666666666666666653
No 351
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=43.30 E-value=2.9e+02 Score=26.05 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=28.7
Q ss_pred CCcEEEEeCC-----CcEEEEeCCCCeEEEcccccCC-cccccc-cceEEcCCCCEEEEeC
Q 015463 142 TGDLYIADAY-----FGLMKVGPEGGLATSLATEAEG-VPLRFT-NDLDIDDEGNVYFTDS 195 (406)
Q Consensus 142 ~g~L~Vad~~-----~gl~~~d~~~~~~~~l~~~~~~-~~~~~~-~~l~~d~dG~ly~t~~ 195 (406)
++.|||.... .-++++|+++.+.+.+.....+ .+.... ...++-.++.||+.-.
T Consensus 171 ~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 171 QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGG 231 (323)
T ss_pred CCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Confidence 5788886432 1367899998887765432111 111111 1112233678888643
No 352
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=40.11 E-value=3.3e+02 Score=28.04 Aligned_cols=123 Identities=14% Similarity=0.234 Sum_probs=0.0
Q ss_pred ceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463 61 EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF 138 (406)
Q Consensus 61 ~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~ 138 (406)
|..++|.--=..++.+..+|.+|..|+.|-++..||.- +..+...++.- .......|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt---------------------aNIFsvKF 101 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT---------------------ANIFSVKF 101 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc---------------------cceeEEee
Q ss_pred eCCCCcEEEEeCC--CcEEEEeCCCCeEEEcccccCCc------ccccccceEEcCCC-CEEEEeCCCchhhhccccccc
Q 015463 139 DKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGV------PLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENI 209 (406)
Q Consensus 139 d~~~g~L~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~------~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~ 209 (406)
-|..++=.|.+.. .-|..+|.+..+-.-........ ....+-.|+..++| +.+++.+.
T Consensus 102 vP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE------------- 168 (758)
T KOG1310|consen 102 VPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE------------- 168 (758)
T ss_pred eccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC-------------
Q ss_pred cccccccCCCCCCCcccCCCCeEEEEe
Q 015463 210 PLQLCSSLNDPSPIKITKDTGRVLKYD 236 (406)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d 236 (406)
+|.+..||
T Consensus 169 -------------------DGtirQyD 176 (758)
T KOG1310|consen 169 -------------------DGTIRQYD 176 (758)
T ss_pred -------------------Ccceeeec
No 353
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=39.12 E-value=2e+02 Score=22.95 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=15.2
Q ss_pred CCCCceEECCCCCEEEEEc
Q 015463 295 GYPDNVRTNEKGEFWVAIH 313 (406)
Q Consensus 295 g~pd~i~~d~~G~lwv~~~ 313 (406)
+.|--+.++.+|++|+...
T Consensus 82 ~ep~~l~~l~dgri~~ts~ 100 (123)
T PF11763_consen 82 SEPLDLHTLSDGRIWFTSN 100 (123)
T ss_pred CCcEEEEEecCCcEEEEcc
Confidence 3466778889999999974
No 354
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=38.98 E-value=2.5e+02 Score=26.70 Aligned_cols=74 Identities=9% Similarity=-0.000 Sum_probs=44.2
Q ss_pred cCcccCcceEEEcCCCCeeEEEecCCEEEEE-eCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFW-DGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK 140 (406)
Q Consensus 65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~ 140 (406)
...-..-.+++...+|.++-+++..|.+.|+ |.. .+.++..... ......|+|++
T Consensus 178 ~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d---------------------~A~iy~iaFSp 236 (346)
T KOG2111|consen 178 NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD---------------------RADIYCIAFSP 236 (346)
T ss_pred EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc---------------------hheEEEEEeCC
Confidence 3334455788888899988888999999887 333 3444432211 12256789998
Q ss_pred CCCcEEEEeCCC-cEEEEeCC
Q 015463 141 KTGDLYIADAYF-GLMKVGPE 160 (406)
Q Consensus 141 ~~g~L~Vad~~~-gl~~~d~~ 160 (406)
+..+..+.+.+ .|..+...
T Consensus 237 -~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 237 -NSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred -CccEEEEEcCCCeEEEEEee
Confidence 44433333444 45555543
No 355
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=37.23 E-value=3.7e+02 Score=25.53 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=60.1
Q ss_pred CcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccc
Q 015463 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIP 210 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~ 210 (406)
+-..|+.+. .+.+||+|...|++.+|..+.+...+...... +.....++++.. ..-|++...
T Consensus 129 gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~-~~~d~~~v~ISG-n~AYvA~~d-------------- 190 (370)
T COG5276 129 GYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PGGDTHDVAISG-NYAYVAWRD-------------- 190 (370)
T ss_pred ceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeecc-CCCCceeEEEec-CeEEEEEeC--------------
Confidence 445677776 56899999889999999776544333322111 111123455542 245665432
Q ss_pred ccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC---CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCC
Q 015463 211 LQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL---QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK 283 (406)
Q Consensus 211 ~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~---~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~ 283 (406)
++|..+|-..-.--++.... ....++..+++. .|++.- ...+...+.++++
T Consensus 191 -------------------~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr--~y~vvy-~egvlivd~s~~s 244 (370)
T COG5276 191 -------------------GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR--AYLVVY-DEGVLIVDVSGPS 244 (370)
T ss_pred -------------------CCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe--eEEEEc-ccceEEEecCCCC
Confidence 45777766544333332211 133455555443 444433 3467777776653
No 356
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=36.49 E-value=99 Score=18.69 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=12.8
Q ss_pred ceEEEecCCCEEEEEeCC
Q 015463 253 NGLSLSKDKSFFVFCEGS 270 (406)
Q Consensus 253 ngi~l~~d~~~l~v~~t~ 270 (406)
...++||||+.++++...
T Consensus 12 ~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp EEEEE-TTSSEEEEEEEC
T ss_pred cCEEEecCCCEEEEEecC
Confidence 357799999998887643
No 357
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.50 E-value=1.1e+02 Score=31.31 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=39.7
Q ss_pred cCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463 226 TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 280 (406)
Q Consensus 226 ~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~ 280 (406)
+..+|.|..||..++.+. +......|+-+++.|++..+.|++ .++.+..+|..
T Consensus 277 GC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s-~qGelQ~FD~A 329 (545)
T PF11768_consen 277 GCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGS-EQGELQCFDMA 329 (545)
T ss_pred EecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEc-CCceEEEEEee
Confidence 455789999999866443 444445688899999998776664 57889999875
No 358
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=35.42 E-value=4.9e+02 Score=26.39 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=58.9
Q ss_pred EEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463 136 LRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS 215 (406)
Q Consensus 136 i~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~ 215 (406)
+..-+ +|+|+++.. ..+..+|..|..+..+.- ++....+=.++...++|++.+........+. ..-....
T Consensus 153 ~~~l~-nG~ll~~~~-~~~~e~D~~G~v~~~~~l--~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~------~~~~~~~ 222 (477)
T PF05935_consen 153 FKQLP-NGNLLIGSG-NRLYEIDLLGKVIWEYDL--PGGYYDFHHDIDELPNGNLLILASETKYVDE------DKDVDTV 222 (477)
T ss_dssp EEE-T-TS-EEEEEB-TEEEEE-TT--EEEEEE----TTEE-B-S-EEE-TTS-EEEEEEETTEE-T------S-EE---
T ss_pred eeEcC-CCCEEEecC-CceEEEcCCCCEEEeeec--CCcccccccccEECCCCCEEEEEeecccccC------CCCccEe
Confidence 44555 899988875 789999998765444321 2211223467889999987776531110000 0011111
Q ss_pred cCCCCCCCcccCCCCeEEEEeCCCCeEEEe---cccC-------------------------CCcceEEEecCCCEEEEE
Q 015463 216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVL---LRNL-------------------------QFPNGLSLSKDKSFFVFC 267 (406)
Q Consensus 216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~---~~~~-------------------------~~~ngi~l~~d~~~l~v~ 267 (406)
+ -.|+.+| .+|++... .+-+ .+.|++.+.+..+.++++
T Consensus 223 ~-------------D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivS 288 (477)
T PF05935_consen 223 E-------------DVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVS 288 (477)
T ss_dssp S--------------EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEE
T ss_pred c-------------CEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEE
Confidence 1 3477888 45654322 1111 124788888867788888
Q ss_pred eCCCCeEEEEEee
Q 015463 268 EGSVGRLHKYWLI 280 (406)
Q Consensus 268 ~t~~~~i~~~~~~ 280 (406)
....+.|++++..
T Consensus 289 sR~~s~V~~Id~~ 301 (477)
T PF05935_consen 289 SRHQSAVIKIDYR 301 (477)
T ss_dssp ETTT-EEEEEE-T
T ss_pred cCcceEEEEEECC
Confidence 8777789998843
No 359
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=35.25 E-value=6e+02 Score=27.35 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=37.1
Q ss_pred CCeEEEEeCCC----CeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463 229 TGRVLKYDPTT----KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 229 ~g~l~~~d~~t----~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g 281 (406)
.|.|..||... ++..++.+.-...+.+.+.+-+-.++++..-.+.|..|++.-
T Consensus 109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence 47788888763 112233344456788888888888889888778888888863
No 360
>PF13964 Kelch_6: Kelch motif
Probab=35.18 E-value=77 Score=20.50 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCCeEEEec
Q 015463 229 TGRVLKYDPTTKQTTVLL 246 (406)
Q Consensus 229 ~g~l~~~d~~t~~~~~~~ 246 (406)
...+++||+++++.+.+.
T Consensus 27 ~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLP 44 (50)
T ss_pred cccEEEEcCCCCcEEECC
Confidence 357999999999887653
No 361
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=34.26 E-value=4.1e+02 Score=25.16 Aligned_cols=175 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred cCcceEEEcCCCCeeEE-EecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463 69 QGPESMAFDPLGRGPYT-GVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (406)
Q Consensus 69 ~gpe~i~~d~~g~~ly~-g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~ 144 (406)
.+.++..+-|-.+.+|+ ++.|..+..||.+ ....|.... ..-...-.|..+.-.-
T Consensus 102 y~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~-----------------~VYshamSp~a~sHcL---- 160 (397)
T KOG4283|consen 102 YAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG-----------------KVYSHAMSPMAMSHCL---- 160 (397)
T ss_pred eeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCc-----------------eeehhhcChhhhcceE----
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463 145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK 224 (406)
Q Consensus 145 L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 224 (406)
+-+++.+-.+...|...|..........+. +-.+...+.-....++.+..-..+-| +
T Consensus 161 iA~gtr~~~VrLCDi~SGs~sH~LsGHr~~----vlaV~Wsp~~e~vLatgsaDg~irlW-------------------D 217 (397)
T KOG4283|consen 161 IAAGTRDVQVRLCDIASGSFSHTLSGHRDG----VLAVEWSPSSEWVLATGSADGAIRLW-------------------D 217 (397)
T ss_pred EEEecCCCcEEEEeccCCcceeeeccccCc----eEEEEeccCceeEEEecCCCceEEEE-------------------E
Q ss_pred ccCCCCeEEEEeCCCCeEEEecc----cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCccee
Q 015463 225 ITKDTGRVLKYDPTTKQTTVLLR----NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE 288 (406)
Q Consensus 225 ~~~~~g~l~~~d~~t~~~~~~~~----~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~ 288 (406)
+.+..|.+...|...++.-...+ .....||+|++.|+..++-+.+ ..|+..++.........+
T Consensus 218 iRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt-d~r~r~wn~~~G~ntl~~ 284 (397)
T KOG4283|consen 218 IRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT-DDRIRVWNMESGRNTLRE 284 (397)
T ss_pred eecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC-ccceEEeecccCcccccc
No 362
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=33.58 E-value=3.7e+02 Score=24.47 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=46.6
Q ss_pred CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEE
Q 015463 79 LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMK 156 (406)
Q Consensus 79 ~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~ 156 (406)
+|. ||.-+..|+||.+++. ..+.+.... ......+.+.|+.|.|--++|-|......-+|
T Consensus 38 ~G~-LYgl~~~g~lYtIn~~tG~aT~vg~s~-----------------~~~al~g~~~gvDFNP~aDRlRvvs~~GqNlR 99 (236)
T PF14339_consen 38 NGQ-LYGLGSTGRLYTINPATGAATPVGASP-----------------LTVALSGTAFGVDFNPAADRLRVVSNTGQNLR 99 (236)
T ss_pred CCC-EEEEeCCCcEEEEECCCCeEEEeeccc-----------------ccccccCceEEEecCcccCcEEEEccCCcEEE
Confidence 566 8888888999999987 333331110 00111344788888886688887766667899
Q ss_pred EeCCCCeEE
Q 015463 157 VGPEGGLAT 165 (406)
Q Consensus 157 ~d~~~~~~~ 165 (406)
+++++|.+.
T Consensus 100 ~npdtGav~ 108 (236)
T PF14339_consen 100 LNPDTGAVT 108 (236)
T ss_pred ECCCCCCce
Confidence 999988643
No 363
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=33.03 E-value=3.7e+02 Score=28.00 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=39.9
Q ss_pred CCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeC
Q 015463 130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDS 195 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~ 195 (406)
.|.|..+.|.+..-.|+||+. +-|..||.....+. .....+ ...+..+++++.| +|.+++.
T Consensus 566 kG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelv--KkL~tg--~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 566 KGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELV--KKLLTG--SKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred CCceeEEEecCCCceEEEEec-cceEEEehhHHHHH--HHHhcC--CeeeeeeeecCCCCeEEEecC
Confidence 466888889886678999985 46777776543211 111122 2357788999987 7777753
No 364
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.30 E-value=5e+02 Score=25.62 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=20.7
Q ss_pred cccCcceEEEcCCCCeeEEEecCCEEEEEe
Q 015463 67 QIQGPESMAFDPLGRGPYTGVADGRILFWD 96 (406)
Q Consensus 67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~ 96 (406)
.+.|-+++.++++|+.+|+-+.+|+--|.+
T Consensus 67 p~~G~Sgi~~d~~~~~f~~lSDng~g~K~n 96 (391)
T COG4222 67 PVGGFSGITYDPQGDGYWALSDNGRGSKLN 96 (391)
T ss_pred CCCceeeeEEccCCCeEEEEeCCCcccccC
Confidence 455668888888887677777776544443
No 365
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=31.69 E-value=97 Score=31.53 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=33.7
Q ss_pred cccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEE
Q 015463 178 FTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLS 256 (406)
Q Consensus 178 ~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~ 256 (406)
.+|.+++.+||....+.+. +|-|-.||-.+.++.-++ ..+..--.++
T Consensus 292 ~in~f~FS~DG~~LA~VSq--------------------------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvc 339 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ--------------------------------DGFLRIFDFDTQELLGVMKSYFGGLLCVC 339 (636)
T ss_pred cccceeEcCCCceEEEEec--------------------------------CceEEEeeccHHHHHHHHHhhccceEEEE
Confidence 4677788788877666543 354555555544432222 2223345789
Q ss_pred EecCCCEEEE
Q 015463 257 LSKDKSFFVF 266 (406)
Q Consensus 257 l~~d~~~l~v 266 (406)
+|||++++..
T Consensus 340 WSPDGKyIvt 349 (636)
T KOG2394|consen 340 WSPDGKYIVT 349 (636)
T ss_pred EcCCccEEEe
Confidence 9999987643
No 366
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=31.43 E-value=85 Score=16.98 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=17.4
Q ss_pred cceEEEcCCCCeeEEEecCCEEEEE
Q 015463 71 PESMAFDPLGRGPYTGVADGRILFW 95 (406)
Q Consensus 71 pe~i~~d~~g~~ly~g~~~g~I~~~ 95 (406)
..++.+.++++.+.++..++.+..+
T Consensus 15 i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 15 VTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred eeEEEECCCCCEEEEecCCCeEEEc
Confidence 4566777766767777778877654
No 367
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=30.98 E-value=6.5e+02 Score=26.47 Aligned_cols=232 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred cCCCCeeEEEecCCEEEEEeCC-ceeE-----EEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463 77 DPLGRGPYTGVADGRILFWDGL-KWTD-----FAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (406)
Q Consensus 77 d~~g~~ly~g~~~g~I~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~ 150 (406)
....++||++..+|.|..++.. .... +...... .+-...+..-+ ...++|...
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH--------------------~nAifDl~wap-ge~~lVsas 119 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAH--------------------KNAIFDLKWAP-GESLLVSAS 119 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhhcccccc--------------------cceeEeeccCC-CceeEEEcc
Q ss_pred C-CcEEEEeCCCCeEEEc--ccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463 151 Y-FGLMKVGPEGGLATSL--ATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227 (406)
Q Consensus 151 ~-~gl~~~d~~~~~~~~l--~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 227 (406)
+ ..+..+|.++++..-. .-...+. +-.+++.+....-|.+ +.
T Consensus 120 GDsT~r~Wdvk~s~l~G~~~~~GH~~S----vkS~cf~~~n~~vF~t-------------------------------Gg 164 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGRLNLGHTGS----VKSECFMPTNPAVFCT-------------------------------GG 164 (720)
T ss_pred CCceeeeeeeccceeecceeecccccc----cchhhhccCCCcceee-------------------------------cc
Q ss_pred CCCeEEEEeCCCCeEEEecccCCCc----ce---------------------------EEEecCCCEEEEEeCCCCeEEE
Q 015463 228 DTGRVLKYDPTTKQTTVLLRNLQFP----NG---------------------------LSLSKDKSFFVFCEGSVGRLHK 276 (406)
Q Consensus 228 ~~g~l~~~d~~t~~~~~~~~~~~~~----ng---------------------------i~l~~d~~~l~v~~t~~~~i~~ 276 (406)
.+|.++.+|..-.....+...-... ++ +.+..|+..|.-+....+.|.+
T Consensus 165 RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKV 244 (720)
T KOG0321|consen 165 RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKV 244 (720)
T ss_pred CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEE
Q ss_pred EEeeCCCCcceeeeecCCCCCC---------ceEECCCCC-EEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeE
Q 015463 277 YWLIGEKAGNLEAFAILPGYPD---------NVRTNEKGE-FWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLI 346 (406)
Q Consensus 277 ~~~~g~~~~~~~~~~~l~g~pd---------~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 346 (406)
+++..........-....++|. ++..|..|+ +++......
T Consensus 245 WDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s------------------------------ 294 (720)
T KOG0321|consen 245 WDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS------------------------------ 294 (720)
T ss_pred EeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc------------------------------
Q ss_pred eecCcceEEEEEECCCCCEEEEEECCCCCeeeceeEEEE---eCCEEEEecCCCCeEEEE
Q 015463 347 HVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEE---KDGKLWMGSVLMPFVAVY 403 (406)
Q Consensus 347 ~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~~s~~~~---~~g~Ly~Gs~~~~~i~~~ 403 (406)
|+.||-.+.-+.-..-..|.....+..-.+ ++-.|.=|+.....+.++
T Consensus 295 ---------Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 295 ---------IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred ---------EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
No 368
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.21 E-value=5.5e+02 Score=25.03 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=35.4
Q ss_pred CCCCeEEEEeCCCCeEEE-ecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463 227 KDTGRVLKYDPTTKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 227 ~~~g~l~~~d~~t~~~~~-~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g 281 (406)
..++.+-.+|..++..-. +........+++++|.|++++-+. ..+.+..++++.
T Consensus 311 SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca-DDktlrvwdl~~ 365 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA-DDKTLRVWDLKN 365 (406)
T ss_pred cccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe-cCCcEEEEEecc
Confidence 345667777888875432 233334567899999999876554 456777777763
No 369
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=28.88 E-value=6.6e+02 Score=25.87 Aligned_cols=100 Identities=13% Similarity=0.180 Sum_probs=57.6
Q ss_pred CcceEEEEeCCCCcEEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccc
Q 015463 131 GRPLGLRFDKKTGDLYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKE 207 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~ 207 (406)
|-.+.+.+.+ .++=+..-++ ..+-.+|+++.-+-.+. +|. =|.+.+.+.|+|.+-..-
T Consensus 271 GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~~v~df~---egp----RN~~~fnp~g~ii~lAGF----------- 331 (566)
T KOG2315|consen 271 GPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGKPVFDFP---EGP----RNTAFFNPHGNIILLAGF----------- 331 (566)
T ss_pred CCceEEEECC-CCCEEEEEEecccceEEEEcCCCCEeEeCC---CCC----ccceEECCCCCEEEEeec-----------
Confidence 4456788887 5654433332 35777777765433322 121 256778888876654311
Q ss_pred cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC--CCcceEEEecCCCEEEEEeCC
Q 015463 208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFVFCEGS 270 (406)
Q Consensus 208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--~~~ngi~l~~d~~~l~v~~t~ 270 (406)
+.-.|.+-.+|..+.+. +..+ ....-..++|||++++.+.|.
T Consensus 332 ------------------GNL~G~mEvwDv~n~K~---i~~~~a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 332 ------------------GNLPGDMEVWDVPNRKL---IAKFKAANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred ------------------CCCCCceEEEeccchhh---ccccccCCceEEEEcCCCcEEEEEecc
Confidence 22247788888765321 2222 233456799999999888765
No 370
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.87 E-value=8e+02 Score=26.86 Aligned_cols=191 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred EEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccccc
Q 015463 137 RFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSS 216 (406)
Q Consensus 137 ~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e 216 (406)
.+++..|.+++++..++|+.++.. ..+...+..-+...+..+..+.+-++.++.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv---------------------- 83 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFLYILNKQNFLFSV---------------------- 83 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc----ceeeehheecchhhhhHhhcccCceEEEEE----------------------
Q ss_pred CCCCCCCcccCCCC----eEEEEeCCCCeEEE--------ecccCCCcc------eEEEecCCCEEEEEeCCCCeEEEE-
Q 015463 217 LNDPSPIKITKDTG----RVLKYDPTTKQTTV--------LLRNLQFPN------GLSLSKDKSFFVFCEGSVGRLHKY- 277 (406)
Q Consensus 217 ~~~~~~~~~~~~~g----~l~~~d~~t~~~~~--------~~~~~~~~n------gi~l~~d~~~l~v~~t~~~~i~~~- 277 (406)
+...+ -|-.|+++.-+-.. ....+.+|+ .++++.|-+.+ ++.-.++.|..|
T Consensus 84 ---------~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~I-v~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 84 ---------GEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTI-VCGFTNGLVICYK 153 (933)
T ss_pred ---------eecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEE-EEEecCcEEEEEc
Q ss_pred -EeeCCCCcceeeeecCCCCCCceEECCCCCE--EEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceE
Q 015463 278 -WLIGEKAGNLEAFAILPGYPDNVRTNEKGEF--WVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHA 354 (406)
Q Consensus 278 -~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~l--wv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 354 (406)
++..++..+........+--.|++.-.+|.. +|+|...
T Consensus 154 GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~--------------------------------------- 194 (933)
T KOG2114|consen 154 GDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQ--------------------------------------- 194 (933)
T ss_pred CcchhccccceeeeccCCCCceeeEEecCCceeEEEEecce---------------------------------------
Q ss_pred EEEEECCCCCE-EEEEECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeCC
Q 015463 355 MAVKYSPEGKI-LQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 406 (406)
Q Consensus 355 ~v~~~d~~g~~-~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~~ 406 (406)
|..|+-+|+. .....|..|...+..+.-.... ++-.++ ..++..|+.+
T Consensus 195 -V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~-qfIca~--~e~l~fY~sd 243 (933)
T KOG2114|consen 195 -VMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY-QFICAG--SEFLYFYDSD 243 (933)
T ss_pred -eEEEEecCCCcceeeeccCCccceeeecCCCCc-cEEEec--CceEEEEcCC
No 371
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=27.31 E-value=3.3e+02 Score=26.99 Aligned_cols=53 Identities=9% Similarity=0.158 Sum_probs=36.7
Q ss_pred CCeEEEEeCCCC--eEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463 229 TGRVLKYDPTTK--QTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 281 (406)
Q Consensus 229 ~g~l~~~d~~t~--~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g 281 (406)
++.|..+|..++ +....... -...|.+++.|-+.+++.+....++|..+++..
T Consensus 249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 478889998753 21111222 233578999998888888877788999999764
No 372
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.29 E-value=6.5e+02 Score=27.11 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=41.2
Q ss_pred CcceEEEcC-CCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463 70 GPESMAFDP-LGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (406)
Q Consensus 70 gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L 145 (406)
....+.+.+ .-++|.+|+.||.|..||.. ....+.. .+-..-.+.|.+..++.
T Consensus 135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-----------------------nSESiRDV~fsp~~~~~ 191 (839)
T KOG0269|consen 135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-----------------------NSESIRDVKFSPGYGNK 191 (839)
T ss_pred ceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-----------------------cchhhhceeeccCCCce
Confidence 334444443 34568889999999888865 1111110 01123456788767888
Q ss_pred EEEeCCCc-EEEEeCC
Q 015463 146 YIADAYFG-LMKVGPE 160 (406)
Q Consensus 146 ~Vad~~~g-l~~~d~~ 160 (406)
+++....| |..+|..
T Consensus 192 F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 192 FASIHDSGYLQLWDLR 207 (839)
T ss_pred EEEecCCceEEEeecc
Confidence 88877766 5567765
No 373
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=25.27 E-value=5.3e+02 Score=23.59 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=24.6
Q ss_pred EEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEe
Q 015463 155 MKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTD 194 (406)
Q Consensus 155 ~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~ 194 (406)
..+|+.+++++.+... ...+..+-++.+||++.++-
T Consensus 49 ~~yD~~tn~~rpl~v~----td~FCSgg~~L~dG~ll~tG 84 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQ----TDTFCSGGAFLPDGRLLQTG 84 (243)
T ss_pred EEEecCCCcEEeccCC----CCCcccCcCCCCCCCEEEeC
Confidence 5678888888776432 22356666777899988764
No 374
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.15 E-value=1e+03 Score=26.94 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=52.7
Q ss_pred CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCC-cceEEEEeCC-CCcEEEEeCCCcEE
Q 015463 79 LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICG-RPLGLRFDKK-TGDLYIADAYFGLM 155 (406)
Q Consensus 79 ~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~gi~~d~~-~g~L~Vad~~~gl~ 155 (406)
.|+++.+|..||.|..+|.. .-.. ...|.. .++..- ...++.+.+. -+.|.-+...+.|.
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~d--------s~v~~~---------R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPD--------SLVCVY---------REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCcc--------ccceee---------cccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence 47888899999999999865 1000 001111 011101 1455666551 23466665556688
Q ss_pred EEeCCCCeEEEcccccCCcc-cccccceEEcCCCCEEEEeC
Q 015463 156 KVGPEGGLATSLATEAEGVP-LRFTNDLDIDDEGNVYFTDS 195 (406)
Q Consensus 156 ~~d~~~~~~~~l~~~~~~~~-~~~~~~l~~d~dG~ly~t~~ 195 (406)
.+|+.....+.+.+...... ......+.++++-.|+.+.+
T Consensus 1283 ~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1283 LLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred EEecccCcccccceeeeccccCccceeeeeccCCCeeeecC
Confidence 88887643333322211000 11256778887777777653
No 375
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=24.56 E-value=6.4e+02 Score=24.28 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=53.2
Q ss_pred CCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCc---eEEC
Q 015463 228 DTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN---VRTN 303 (406)
Q Consensus 228 ~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~---i~~d 303 (406)
..|-+..+|+.+++......+ ...-|-|-..|+.-.++++.+....|..+++.... =.-+|....|.-|- +.++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe--EEEEecccccccCcEEEEEEc
Confidence 346678889988776543322 23346677778877777777766777777765321 11233344454443 3456
Q ss_pred CCCCEEEEEccCCcchhh
Q 015463 304 EKGEFWVAIHCRRSLYSH 321 (406)
Q Consensus 304 ~~G~lwv~~~~~~~~~~~ 321 (406)
.+|...++..-.++...+
T Consensus 191 ~~gd~i~ScGmDhslk~W 208 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLW 208 (385)
T ss_pred CCCCeeeccCCcceEEEE
Confidence 777766655444444443
No 376
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=24.22 E-value=3.4e+02 Score=22.66 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=25.6
Q ss_pred CCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCC
Q 015463 130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGG 162 (406)
Q Consensus 130 ~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~ 162 (406)
.++.+||+.|+..++.|+-+. ..|+++..+..
T Consensus 74 ~~~~~gl~~D~~~~t~W~ys~-~~I~ei~i~~E 105 (147)
T PF05131_consen 74 GGKILGLCRDPSSNTFWLYSS-NSIFEIVINNE 105 (147)
T ss_pred CcceeeEEEcCCCCeEEEEeC-CeeEEEEcCcc
Confidence 577899999997889999875 57888876543
No 377
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=24.19 E-value=5.5e+02 Score=23.38 Aligned_cols=185 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred cCcceEEEcCCCCeeEEEe---cCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463 69 QGPESMAFDPLGRGPYTGV---ADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (406)
Q Consensus 69 ~gpe~i~~d~~g~~ly~g~---~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~ 144 (406)
..+++.++.++|+.+.+-. ....++....+ ....... ......-.+++ +|.
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~------------------------g~~l~~PS~d~-~g~ 78 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT------------------------GGSLTRPSWDP-DGW 78 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc------------------------CCccccccccC-CCC
Q ss_pred EEEEeCCCcEEEEe--CCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463 145 LYIADAYFGLMKVG--PEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS 221 (406)
Q Consensus 145 L~Vad~~~gl~~~d--~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 221 (406)
+|+.+......++- ...+......-......- .+..|.+.+|| ++-+-..
T Consensus 79 ~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~-~I~~l~vSpDG~RvA~v~~-------------------------- 131 (253)
T PF10647_consen 79 VWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRG-RITALRVSPDGTRVAVVVE-------------------------- 131 (253)
T ss_pred EEEEEcCCCceEEEEecCCCcceeEEecccccCC-ceEEEEECCCCcEEEEEEe--------------------------
Q ss_pred CCcccCCCCeEEEE----eCCC------CeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEE-EEeeCCCCcce---
Q 015463 222 PIKITKDTGRVLKY----DPTT------KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHK-YWLIGEKAGNL--- 287 (406)
Q Consensus 222 ~~~~~~~~g~l~~~----d~~t------~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~-~~~~g~~~~~~--- 287 (406)
....++|+.- +... ...+...........+++..+...++........++. +..+|......
T Consensus 132 ----~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~ 207 (253)
T PF10647_consen 132 ----DGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPSTPLPSV 207 (253)
T ss_pred ----cCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCcccccCCC
Q ss_pred ---eeeecCCCCCCceEECCCCCEE
Q 015463 288 ---EAFAILPGYPDNVRTNEKGEFW 309 (406)
Q Consensus 288 ---~~~~~l~g~pd~i~~d~~G~lw 309 (406)
-......+.+..+....++.+|
T Consensus 208 ~~~~~v~a~~~~~~~~~~t~~~~~~ 232 (253)
T PF10647_consen 208 NLGVPVVAVAASPSTVYVTDDGGVL 232 (253)
T ss_pred CCCcceEEeeCCCcEEEEECCCcEE
No 378
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=23.79 E-value=7.2e+02 Score=24.58 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=55.6
Q ss_pred CcceEEEEeCCCCcEEEEeCCCc-EEEEeCC--------C-----CeEEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463 131 GRPLGLRFDKKTGDLYIADAYFG-LMKVGPE--------G-----GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS 196 (406)
Q Consensus 131 ~~p~gi~~d~~~g~L~Vad~~~g-l~~~d~~--------~-----~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~ 196 (406)
...+.++|++ +|+|.......| ++.+-.. + .+........ ..-...+.+++..+|++..++.+
T Consensus 66 ~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~l-r~h~~diydL~Ws~d~~~l~s~s- 142 (434)
T KOG1009|consen 66 RAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVL-RGHRDDIYDLAWSPDSNFLVSGS- 142 (434)
T ss_pred ceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEe-cccccchhhhhccCCCceeeeee-
Confidence 3467899999 788776655444 4444332 1 0000000000 00122456677777776655543
Q ss_pred CchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCE
Q 015463 197 TNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSF 263 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~ 263 (406)
-+..++.+|...|++.... +.-...+|++++|-+++
T Consensus 143 -------------------------------~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy 179 (434)
T KOG1009|consen 143 -------------------------------VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY 179 (434)
T ss_pred -------------------------------ccceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence 2355778888888876654 33467889998886653
No 379
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=23.39 E-value=7.1e+02 Score=24.41 Aligned_cols=77 Identities=12% Similarity=0.061 Sum_probs=47.5
Q ss_pred eccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcc-eEEEEeCC
Q 015463 63 KFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKK 141 (406)
Q Consensus 63 ~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~d~~ 141 (406)
..+|...--+++.+.+.+. +|..+.|..|.+||...-... ....++.+ +.+...+
T Consensus 255 tl~GHt~~Vs~V~w~d~~v-~yS~SwDHTIk~WDletg~~~----------------------~~~~~~ksl~~i~~~~- 310 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSDATV-IYSVSWDHTIKVWDLETGGLK----------------------STLTTNKSLNCISYSP- 310 (423)
T ss_pred EecccccceeeEEEcCCCc-eEeecccceEEEEEeecccce----------------------eeeecCcceeEeeccc-
Confidence 3455655668888887555 999999999999997611000 00112223 3555666
Q ss_pred CCcEEEEeCC-CcEEEEeCCCCe
Q 015463 142 TGDLYIADAY-FGLMKVGPEGGL 163 (406)
Q Consensus 142 ~g~L~Vad~~-~gl~~~d~~~~~ 163 (406)
.-+|.++... .-|..+||.++.
T Consensus 311 ~~~Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 311 LSKLLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred ccceeeecCCCCceeecCCCCCC
Confidence 4556655443 567788998764
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.40 E-value=5.8e+02 Score=26.33 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=49.2
Q ss_pred eEEEecCCEEEEEeCC--ceeEEEe-ecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEEeC
Q 015463 83 PYTGVADGRILFWDGL--KWTDFAF-TSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP 159 (406)
Q Consensus 83 ly~g~~~g~I~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~ 159 (406)
-++|..+.+|.|||+. ....++- .+.+ -.....-..++-.. +|.+.||...+-|..||.
T Consensus 397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kq-----------------y~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ-----------------YSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR 458 (644)
T ss_pred cEEeecCCceEEecccccCcceeeeeeccc-----------------cccccccceeeecC-CceEEEeecCCcEEeehh
Confidence 4788889999999987 1111110 0000 00011112233333 788888877666888876
Q ss_pred CCCeEEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463 160 EGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS 196 (406)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~ 196 (406)
-+...++.... -|. .+..+.+..||.-.+++..
T Consensus 459 i~~~AKTAlPg-LG~---~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 459 IGRRAKTALPG-LGD---AIKHVDVTADGKWILATCK 491 (644)
T ss_pred hhhhhhhcccc-cCC---ceeeEEeeccCcEEEEecc
Confidence 43333222111 122 2456788889987777653
No 381
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=21.84 E-value=4.3e+02 Score=28.56 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=41.0
Q ss_pred ceEEEc----CCCC--eeEEEecCCEEEEEeCC-c---eeE-EEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463 72 ESMAFD----PLGR--GPYTGVADGRILFWDGL-K---WTD-FAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK 140 (406)
Q Consensus 72 e~i~~d----~~g~--~ly~g~~~g~I~~~~~~-~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~ 140 (406)
.-|++| .+++ .+|+||..|.|+|+-.- . ... +.... ...........|.++.
T Consensus 411 t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEEl-----------------qvf~~~~pI~~m~Ls~ 473 (737)
T KOG3611|consen 411 TQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEEL-----------------QVFPDAEPIRSMQLSS 473 (737)
T ss_pred EEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEE-----------------eecCCCCceeEEEecc
Confidence 345565 3343 68999999999988532 1 111 11000 0001111245788888
Q ss_pred CCCcEEEEeCCCcEEEEeCC
Q 015463 141 KTGDLYIADAYFGLMKVGPE 160 (406)
Q Consensus 141 ~~g~L~Vad~~~gl~~~d~~ 160 (406)
..+.|||+.. .||.++...
T Consensus 474 ~~~~LyVgs~-~gV~qvpl~ 492 (737)
T KOG3611|consen 474 KRGSLYVGSR-SGVVQVPLA 492 (737)
T ss_pred cCCeEEEEcc-CcEEEeehh
Confidence 6778999975 588888653
No 382
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.75 E-value=8.4e+02 Score=24.66 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=23.0
Q ss_pred CCCCceEECCCCCEEEEEccCCcchhhhhhcC
Q 015463 295 GYPDNVRTNEKGEFWVAIHCRRSLYSHLMALY 326 (406)
Q Consensus 295 g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~ 326 (406)
|--..|++|++|++.+++...+..-.|.+..+
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeeccc
Confidence 33467899999999988887776655545443
No 383
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=21.24 E-value=7.1e+02 Score=23.58 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=28.6
Q ss_pred CCcEEEEeCC------------CcEEEEeCCCCeEEEcccccCCcccccccceEE-cCCCCEEEEeC
Q 015463 142 TGDLYIADAY------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI-DDEGNVYFTDS 195 (406)
Q Consensus 142 ~g~L~Vad~~------------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~-d~dG~ly~t~~ 195 (406)
++.|||.-.. ..+++||+.+.+.+.+.... +.......++ .-+|.||+...
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~---p~~~~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRS---PVGLLGASGFSLHNGQAYFTGG 126 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCC---CCcccceeEEEEeCCEEEEEcC
Confidence 5788886542 23788999888776654211 1111111122 34789998753
No 384
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=20.99 E-value=1.8e+02 Score=27.98 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=20.2
Q ss_pred cEEEEeCCC-CeEE-EcccccCCcccccccceEEcCCC---CEEEEeCC
Q 015463 153 GLMKVGPEG-GLAT-SLATEAEGVPLRFTNDLDIDDEG---NVYFTDSS 196 (406)
Q Consensus 153 gl~~~d~~~-~~~~-~l~~~~~~~~~~~~~~l~~d~dG---~ly~t~~~ 196 (406)
.|+.+|.++ |... .+.......-+..|.-+..+.|| .+|++|..
T Consensus 182 ~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~ 230 (335)
T PF05567_consen 182 ALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLG 230 (335)
T ss_dssp EEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETT
T ss_pred EEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCC
Confidence 589999998 6543 22211111112233333345566 58888753
No 385
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.53 E-value=8e+02 Score=23.92 Aligned_cols=17 Identities=47% Similarity=0.552 Sum_probs=12.2
Q ss_pred CeEEEEeCCCCeEEEec
Q 015463 230 GRVLKYDPTTKQTTVLL 246 (406)
Q Consensus 230 g~l~~~d~~t~~~~~~~ 246 (406)
-.++.|+|++.+.+.+-
T Consensus 196 ~ev~sy~p~~n~W~~~G 212 (381)
T COG3055 196 KEVLSYDPSTNQWRNLG 212 (381)
T ss_pred ccccccccccchhhhcC
Confidence 34889999877666543
No 386
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=20.36 E-value=1.7e+02 Score=29.34 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.0
Q ss_pred CcccccccceEEcCCCCEEEEeCC
Q 015463 173 GVPLRFTNDLDIDDEGNVYFTDSS 196 (406)
Q Consensus 173 ~~~~~~~~~l~~d~dG~ly~t~~~ 196 (406)
+..+..+..|.+|+||..|+++..
T Consensus 463 ~~~fylphgl~~dkdgf~~~tdva 486 (501)
T KOG3567|consen 463 KNLFYLPHGLSIDKDGFYWVTDVA 486 (501)
T ss_pred CCceecCCcceecCCCcEEeeccc
Confidence 345778999999999999999854
No 387
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=20.31 E-value=2.3e+02 Score=26.29 Aligned_cols=31 Identities=23% Similarity=0.166 Sum_probs=24.7
Q ss_pred cCcceEEEcCCCCeeEEEecCCEEEEEeCCc
Q 015463 69 QGPESMAFDPLGRGPYTGVADGRILFWDGLK 99 (406)
Q Consensus 69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~ 99 (406)
.|-..+.+-+|+.++-++.+||||..+.-..
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrt 282 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRT 282 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEecc
Confidence 4557788889999777889999998887653
Done!