BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015464
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QMX|B Chain B, The Crystal Structure Of L-Phe Inhibited Prephenate
Dehydratase From Chlorobium Tepidum Tls
pdb|2QMX|A Chain A, The Crystal Structure Of L-Phe Inhibited Prephenate
Dehydratase From Chlorobium Tepidum Tls
Length = 283
Score = 232 bits (591), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/291 (48%), Positives = 175/291 (60%), Gaps = 25/291 (8%)
Query: 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGS 177
T +AYQG PGAYSE AA + E +PC+ F+ F AV D AV+PIENS+GGS
Sbjct: 5 TNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSLGGS 61
Query: 178 IHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGI 237
IH+NYDLLLR + I+ E + V HCLLGLPG E + SHPQAL QC +
Sbjct: 62 IHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAXSHPQALVQCHNFFATHPQ 121
Query: 238 VRI-SADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAR 296
+R +A DTAG+A+ VA ++ A+AS +A E+YGLDIL E + D++ N+TRF +A
Sbjct: 122 IRAEAAYDTAGSAKXVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFCIAH 181
Query: 297 E--PIIAGTD-RP----YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPL 349
E P I+ RP KTSIVF L G LF+ALA FALR I+LTKIESRP RK
Sbjct: 182 ENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRK--- 238
Query: 350 RVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCY 400
K F+YLFY DF D AL +L+EFAT ++VLG Y
Sbjct: 239 -----------KAFEYLFYADFIGHREDQNVHNALENLREFATXVKVLGSY 278
>pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
pdb|3MWB|B Chain B, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
Length = 313
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 133/292 (45%), Gaps = 25/292 (8%)
Query: 118 TKVRVAYQGLPGAYSEAAARKAYPKCET--VPCDQFEAAFKAVELWLVDKAVLPIENSVG 175
+ V + G G ++EAA + + +PC A + V D A +PIENSV
Sbjct: 5 SAVTYTFLGPQGTFTEAALXQVPGAADATRIPCTNVNTALERVRAGEADAAXVPIENSVE 64
Query: 176 GSIHRNYDLLLR-HRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEM---- 230
G + D + L I+ E + + L+ PGV ++KR+ +H A AQC +
Sbjct: 65 GGVTATLDAIATGQELRIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDE 124
Query: 231 TLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTR 290
L N V S+ A A ++ + A AAE GL++LAE I D+ D VTR
Sbjct: 125 HLPNADYVPGSST-AASAXGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTR 183
Query: 291 FLILAREPIIAGTDRPYKTSIVFTL-EEGPGMLFKALAVFALRDINLTKIESRPQRKRPL 349
F++++R + KT++V L E+ PG L + L FA R +NL++IESRP
Sbjct: 184 FILVSRPGALPERTGADKTTVVVPLPEDHPGALXEILDQFASRGVNLSRIESRP------ 237
Query: 350 RVVDDSNKGSAKYFD-YLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCY 400
+ +Y Y F ID + D R AL L + R LG Y
Sbjct: 238 ---------TGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSY 280
>pdb|2QMW|A Chain A, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|2QMW|B Chain B, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 267
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 13/232 (5%)
Query: 121 RVAYQGLPGAYSEAAARKAYPKCETV--PCDQFEAAFKAVELWLVDKAVLPIENSVGGSI 178
++ Y G G +S A R+ + + E P KAV V+PIENS+ G+I
Sbjct: 5 QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTI 64
Query: 179 HRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIV 238
+ D L + + GE++L +N L G ++K+V+S A++Q T + +
Sbjct: 65 NIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQ---TTNYIHQH 121
Query: 239 RISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREP 298
+ D Q + I E A+A + E YG + I+D NVTRFL++ +
Sbjct: 122 QFDYDYVDSTIQSLTKI-ENGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQ 180
Query: 299 IIAGTDRPYKTSIVFTL---EEGPGMLFKALAVFALRDINLTKIESRPQRKR 347
TS+ F + + PG+L L FAL +INL+ IESRP + +
Sbjct: 181 QFDQN----ATSLXFLITPXHDKPGLLASVLNTFALFNINLSWIESRPLKTQ 228
>pdb|3LUY|A Chain A, Putative Chorismate Mutase From Bifidobacterium
Adolescentis
Length = 329
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 30/247 (12%)
Query: 166 AVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGL--PGVLKEELKRVFSHPQ 223
++ EN+V G + N D L+ + +VG ++ VN G E + +HP
Sbjct: 60 GIVAWENNVEGYVVPNLDALIDAK-DLVGFARVGVNVEFDAYVAQGADPAEARIATAHPH 118
Query: 224 ALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQD 283
LAQC+ ++ + A A A + + GE A A E+Y + + IQD
Sbjct: 119 GLAQCKRFIAEHRLSTQPATSNAAACRDLIP-GEI---AFGPAICGELYDITRIGTAIQD 174
Query: 284 DDDNVTRFLILAREPIIA--------GTDRPYKTSIVFT-LEEGPGMLFKALAVFALRDI 334
T FL+L+ +A + Y++ + L GPG+L L VF +
Sbjct: 175 YQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGL 234
Query: 335 NLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFL 394
N T SRP + R G+ Y F + +A+ + R + AL + E +
Sbjct: 235 NXTSFISRPIKGR---------TGT-----YSFIVTLDAAPWEERFRDALVEIAEHGDWA 280
Query: 395 RVLGCYP 401
+ L YP
Sbjct: 281 KTLAVYP 287
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
Length = 429
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 310 SIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYL 366
S++F+L+E G L K L +F DINLT IESRP R NK ++F YL
Sbjct: 36 SLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSR---------LNKDEYEFFTYL 83
>pdb|2YNZ|A Chain A, Salmonella Enterica Sada 823-947 Fused To A Gcn4 Adaptor
(Sadak5)
pdb|2YNZ|B Chain B, Salmonella Enterica Sada 823-947 Fused To A Gcn4 Adaptor
(Sadak5)
pdb|2YNZ|C Chain C, Salmonella Enterica Sada 823-947 Fused To A Gcn4 Adaptor
(Sadak5)
Length = 154
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 207 LPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASA 266
+ ++ E ++V + A+A +++NLG +S DD GA AS G T + +
Sbjct: 25 IKKLIYETNQKVDQNTSAIADINTSITNLGTDALSWDDEEGA--FSASHGTSGTNKITNV 82
Query: 267 QAAEI 271
A EI
Sbjct: 83 AAGEI 87
>pdb|2NRA|C Chain C, Crystal Structure Of Pi Initiator Protein In Complex With
Iteron Dna
Length = 276
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 200 VNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGER- 258
+NH L LP KRV AL + L + +I A+D A A++ S+ R
Sbjct: 21 LNHTLAQLPL----PAKRVMYMALALIDSKEPLERGRVFKIRAEDLAALAKITPSLAYRQ 76
Query: 259 --DTGAVASAQAAEIYGLDILA 278
+ G + A + G DI+A
Sbjct: 77 LKEGGKLLGASKISLRGDDIIA 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,839,070
Number of Sequences: 62578
Number of extensions: 476430
Number of successful extensions: 1034
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 12
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)