Query 015464
Match_columns 406
No_of_seqs 308 out of 1289
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qmx_A Prephenate dehydratase; 100.0 4E-86 1.4E-90 644.7 32.1 268 119-403 6-281 (283)
2 3mwb_A Prephenate dehydratase; 100.0 2.2E-85 7.5E-90 646.9 31.2 273 118-404 5-284 (313)
3 2qmw_A PDT, prephenate dehydra 100.0 9.4E-85 3.2E-89 630.0 29.7 261 118-401 2-267 (267)
4 3luy_A Probable chorismate mut 100.0 5E-82 1.7E-86 626.8 26.2 268 118-404 5-290 (329)
5 1phz_A Protein (phenylalanine 99.8 1.7E-20 5.9E-25 190.1 9.4 83 302-399 28-111 (429)
6 2d8d_A Aroag, phospho-2-dehydr 99.3 1.5E-13 5.2E-18 111.6 -1.9 71 27-106 4-82 (90)
7 1ecm_A Endo-oxabicyclic transi 99.2 2.4E-13 8.1E-18 114.3 -4.0 73 26-107 5-86 (109)
8 3ret_A Salicylate biosynthesis 99.2 6.2E-13 2.1E-17 110.4 -1.9 78 22-108 4-89 (101)
9 3rmi_A Chorismate mutase prote 99.1 2.1E-12 7.1E-17 109.5 -3.3 76 23-107 9-93 (114)
10 3nvt_A 3-deoxy-D-arabino-heptu 99.1 3E-11 1E-15 122.2 1.8 73 27-108 29-109 (385)
11 2gtv_X CM, chorismate mutase; 99.0 3.6E-12 1.2E-16 106.3 -5.1 71 27-106 4-91 (104)
12 2vkl_A RV0948C/MT0975; helical 99.0 4.1E-11 1.4E-15 97.4 -1.5 66 25-101 11-84 (90)
13 1ybz_A Chorismate mutase; cons 98.9 6.6E-11 2.3E-15 96.4 -1.6 62 25-105 16-85 (91)
14 2gbb_A Putative chorismate mut 97.8 6.3E-07 2.2E-11 79.7 -4.5 57 45-107 6-71 (156)
15 2fp1_A Chorismate mutase; alph 97.7 1.5E-06 5E-11 78.1 -3.5 57 45-107 9-74 (166)
16 2ko1_A CTR148A, GTP pyrophosph 96.8 0.0058 2E-07 47.3 8.8 67 307-391 4-70 (88)
17 1zpv_A ACT domain protein; str 96.6 0.016 5.6E-07 45.3 9.9 38 308-345 5-42 (91)
18 2f1f_A Acetolactate synthase i 96.3 0.028 9.5E-07 50.1 10.4 67 309-392 4-70 (164)
19 2pc6_A Probable acetolactate s 96.0 0.042 1.4E-06 49.0 10.1 68 308-392 4-71 (165)
20 2fgc_A Acetolactate synthase, 95.9 0.044 1.5E-06 50.0 10.2 72 308-396 29-100 (193)
21 1y7p_A Hypothetical protein AF 93.5 0.12 4.1E-06 48.0 6.4 67 308-390 4-70 (223)
22 2jhe_A Transcription regulator 92.7 0.63 2.1E-05 39.9 9.6 62 311-393 3-64 (190)
23 1u8s_A Glycine cleavage system 92.0 1.6 5.6E-05 38.6 11.7 37 307-343 92-128 (192)
24 2f06_A Conserved hypothetical 91.4 0.77 2.6E-05 38.8 8.5 35 309-343 7-41 (144)
25 2f06_A Conserved hypothetical 91.2 0.83 2.9E-05 38.6 8.5 35 309-343 72-107 (144)
26 1wdn_A GLNBP, glutamine bindin 89.7 5.9 0.0002 33.9 12.9 99 118-234 108-206 (226)
27 3mpk_A Virulence sensor protei 87.5 1.6 5.5E-05 39.6 8.1 99 118-234 138-237 (267)
28 4f3p_A Glutamine-binding perip 87.4 5.5 0.00019 35.2 11.5 85 118-209 129-213 (249)
29 3h7m_A Sensor protein; histidi 87.3 4.1 0.00014 35.2 10.3 99 118-234 116-214 (234)
30 2nyi_A Unknown protein; protei 86.0 2.8 9.4E-05 37.5 8.5 36 307-342 92-127 (195)
31 3k4u_A Binding component of AB 85.9 2.2 7.6E-05 37.7 7.9 49 119-169 115-163 (245)
32 3kzg_A Arginine 3RD transport 85.4 3.4 0.00012 36.2 8.9 102 118-234 109-214 (237)
33 3lou_A Formyltetrahydrofolate 84.6 5.1 0.00017 38.5 10.2 67 308-389 10-81 (292)
34 1xt8_A Putative amino-acid tra 84.5 6.3 0.00022 36.0 10.6 94 119-234 153-249 (292)
35 3o1l_A Formyltetrahydrofolate 82.6 7.4 0.00025 37.6 10.4 68 307-389 21-91 (302)
36 3obi_A Formyltetrahydrofolate 82.3 7.6 0.00026 37.2 10.3 67 308-389 6-75 (288)
37 3k5p_A D-3-phosphoglycerate de 82.2 8.9 0.0003 38.7 11.2 70 307-395 342-411 (416)
38 4h5g_A Amino acid ABC superfam 81.6 3.1 0.00011 37.2 7.0 49 119-169 123-171 (243)
39 1u8s_A Glycine cleavage system 81.1 3.9 0.00013 36.1 7.4 35 309-343 7-41 (192)
40 1sc6_A PGDH, D-3-phosphoglycer 80.0 5 0.00017 40.2 8.5 64 308-390 331-394 (404)
41 3n0v_A Formyltetrahydrofolate 79.7 6.6 0.00023 37.6 8.9 67 308-389 8-76 (286)
42 3ksx_A Nitrate transport prote 79.6 19 0.00065 33.6 12.1 130 118-255 29-177 (324)
43 3del_B Arginine binding protei 79.6 8.3 0.00029 33.6 9.1 48 119-169 118-165 (242)
44 3nrb_A Formyltetrahydrofolate 79.1 10 0.00034 36.3 10.0 67 308-389 7-74 (287)
45 4i62_A Amino acid ABC transpor 78.0 5 0.00017 35.6 7.1 51 118-170 149-199 (269)
46 1ygy_A PGDH, D-3-phosphoglycer 77.7 8.8 0.0003 39.7 9.8 73 308-397 454-526 (529)
47 2y7i_A STM4351; arginine-bindi 77.3 6.1 0.00021 34.0 7.3 51 118-170 111-161 (229)
48 3mpk_A Virulence sensor protei 76.9 20 0.00067 32.2 10.9 114 142-271 72-193 (267)
49 1ii5_A SLR1257 protein; membra 76.5 29 0.001 29.5 11.6 117 142-271 45-168 (233)
50 3kbr_A Cyclohexadienyl dehydra 76.3 3.5 0.00012 36.1 5.5 49 119-169 125-173 (239)
51 3i6v_A Periplasmic His/Glu/Gln 74.9 18 0.00063 31.5 10.0 91 121-234 108-201 (232)
52 3qax_A Probable ABC transporte 74.8 14 0.00047 32.6 9.2 48 119-169 139-186 (268)
53 2yjp_A Putative ABC transporte 73.5 6 0.0002 36.4 6.6 50 119-170 164-213 (291)
54 2nyi_A Unknown protein; protei 73.2 12 0.00043 33.1 8.4 35 309-343 6-40 (195)
55 3un6_A Hypothetical protein sa 70.1 57 0.0019 30.6 12.8 138 118-266 52-210 (341)
56 1lst_A Lysine, arginine, ornit 69.5 11 0.00036 32.8 7.0 50 119-170 111-162 (239)
57 3p96_A Phosphoserine phosphata 69.2 14 0.00049 36.2 8.6 36 309-344 13-48 (415)
58 4dz1_A DALS D-alanine transpor 68.9 5.9 0.0002 35.5 5.2 81 119-209 137-225 (259)
59 3mtj_A Homoserine dehydrogenas 68.4 8.5 0.00029 39.1 6.8 65 311-390 362-426 (444)
60 3del_B Arginine binding protei 67.8 18 0.0006 31.4 8.1 114 142-272 51-172 (242)
61 2pvu_A ARTJ; basic amino acid 67.6 9 0.00031 34.5 6.2 50 119-170 147-197 (272)
62 3tql_A Arginine-binding protei 65.8 10 0.00034 32.4 5.9 50 118-169 108-158 (227)
63 2qpq_A Protein BUG27; alpha/be 65.7 13 0.00046 35.3 7.3 43 128-170 138-184 (301)
64 3kzg_A Arginine 3RD transport 65.6 11 0.00037 32.9 6.2 116 142-272 44-165 (237)
65 2f5x_A BUGD; periplasmic bindi 64.4 8.3 0.00029 37.0 5.6 44 128-171 147-194 (312)
66 3uif_A Sulfonate ABC transport 62.9 93 0.0032 29.1 12.8 117 142-268 45-176 (348)
67 3i6v_A Periplasmic His/Glu/Gln 62.7 28 0.00096 30.3 8.4 112 142-271 45-158 (232)
68 4i62_A Amino acid ABC transpor 62.3 27 0.00092 30.6 8.3 114 142-271 82-204 (269)
69 3jv9_A OXYR, transcriptional r 62.0 67 0.0023 26.6 12.3 144 118-271 4-165 (219)
70 2re1_A Aspartokinase, alpha an 61.4 11 0.00036 32.7 5.2 35 308-342 25-60 (167)
71 2q88_A EHUB, putative ABC tran 61.4 11 0.00039 33.2 5.6 49 119-169 124-173 (257)
72 2pyy_A Ionotropic glutamate re 60.9 39 0.0013 28.6 8.8 114 142-271 41-164 (228)
73 1ixc_A CBNR, LYSR-type regulat 60.2 92 0.0031 27.6 12.9 142 118-269 91-247 (294)
74 2ozz_A Hypothetical protein YH 60.2 35 0.0012 31.5 8.8 121 131-264 30-161 (231)
75 2pyy_A Ionotropic glutamate re 60.0 53 0.0018 27.6 9.6 83 118-209 111-193 (228)
76 4ab5_A Transcriptional regulat 57.7 41 0.0014 28.2 8.4 115 139-271 33-163 (222)
77 3tql_A Arginine-binding protei 57.3 47 0.0016 28.0 8.7 114 142-271 42-164 (227)
78 3s1t_A Aspartokinase; ACT doma 56.8 18 0.00062 31.9 6.0 60 314-388 23-82 (181)
79 1ii5_A SLR1257 protein; membra 56.6 25 0.00084 30.0 6.8 49 118-170 115-163 (233)
80 1wdn_A GLNBP, glutamine bindin 55.8 75 0.0026 26.6 9.8 114 142-271 42-163 (226)
81 3qax_A Probable ABC transporte 55.6 56 0.0019 28.4 9.2 114 142-272 71-193 (268)
82 4go7_X Aspartokinase; transfer 55.4 40 0.0014 30.3 8.1 31 314-344 42-72 (200)
83 2pfz_A Putative exported prote 55.0 1.3E+02 0.0046 27.8 12.4 154 120-281 3-198 (301)
84 2vha_A Periplasmic binding tra 54.7 24 0.00081 31.8 6.6 50 119-170 130-183 (287)
85 2x26_A Periplasmic aliphatic s 54.0 85 0.0029 28.5 10.5 118 142-268 33-162 (308)
86 3k4u_A Binding component of AB 53.7 23 0.0008 30.8 6.3 114 142-271 45-169 (245)
87 3ho7_A OXYR; beta-alpha-barrel 53.4 49 0.0017 28.0 8.2 114 139-270 36-167 (232)
88 3hv1_A Polar amino acid ABC up 53.1 8.6 0.00029 34.4 3.3 52 118-171 126-184 (268)
89 3onm_A Transcriptional regulat 52.1 1.1E+02 0.0038 26.1 13.7 132 118-269 27-171 (238)
90 4f3p_A Glutamine-binding perip 51.5 73 0.0025 27.6 9.3 114 142-271 63-184 (249)
91 2dt9_A Aspartokinase; protein- 51.5 24 0.00083 30.3 5.8 29 314-342 23-51 (167)
92 3h7m_A Sensor protein; histidi 50.1 1.1E+02 0.0039 25.6 11.9 113 142-271 51-171 (234)
93 4dz1_A DALS D-alanine transpor 50.0 1.3E+02 0.0045 26.3 11.4 117 142-272 69-198 (259)
94 3kbr_A Cyclohexadienyl dehydra 49.6 10 0.00035 33.0 3.1 115 142-272 55-180 (239)
95 2v25_A Major cell-binding fact 49.5 16 0.00056 31.8 4.5 51 118-170 147-201 (259)
96 3mah_A Aspartokinase; aspartat 49.2 14 0.00047 31.6 3.8 50 316-389 29-78 (157)
97 2pfy_A Putative exported prote 49.1 1.4E+02 0.0048 27.6 11.3 148 120-275 4-193 (301)
98 2yln_A Putative ABC transporte 48.5 34 0.0012 31.0 6.7 49 118-170 163-211 (283)
99 1tdj_A Biosynthetic threonine 48.4 22 0.00077 36.7 5.9 66 308-391 338-403 (514)
100 2dtj_A Aspartokinase; protein- 47.2 20 0.00068 31.3 4.6 34 308-341 15-49 (178)
101 2hxr_A HTH-type transcriptiona 46.3 1.4E+02 0.0046 25.4 14.0 143 118-270 30-185 (238)
102 3oxn_A Putative transcriptiona 46.0 96 0.0033 26.5 9.0 122 139-271 44-173 (241)
103 2y7p_A LYSR-type regulatory pr 45.9 52 0.0018 28.2 7.2 121 139-270 33-162 (218)
104 2pvu_A ARTJ; basic amino acid 44.4 87 0.003 27.7 8.7 114 142-271 81-202 (272)
105 3n5l_A Binding protein compone 43.1 57 0.002 30.6 7.5 82 120-210 117-213 (310)
106 3fzv_A Probable transcriptiona 42.7 96 0.0033 27.6 8.8 131 118-255 95-238 (306)
107 3qsl_A Putative exported prote 42.0 1.1E+02 0.0037 28.0 9.2 115 142-266 65-195 (346)
108 1uth_A LYSR-type regulatory pr 41.3 57 0.0019 29.8 7.1 122 139-271 130-260 (315)
109 3ix1_A N-formyl-4-amino-5-amin 41.3 1E+02 0.0035 28.0 8.8 88 142-236 35-129 (302)
110 2pv7_A T-protein [includes: ch 39.4 18 0.00062 34.0 3.3 67 102-171 2-74 (298)
111 3hv1_A Polar amino acid ABC up 38.9 18 0.00063 32.1 3.1 116 142-271 61-188 (268)
112 2yjp_A Putative ABC transporte 38.8 52 0.0018 29.8 6.3 114 142-271 98-218 (291)
113 2vha_A Periplasmic binding tra 38.2 1.5E+02 0.0052 26.2 9.4 115 143-271 65-188 (287)
114 4eq9_A ABC transporter substra 38.2 91 0.0031 26.6 7.6 50 118-169 114-169 (246)
115 4eq9_A ABC transporter substra 38.0 83 0.0029 26.9 7.3 115 143-271 49-175 (246)
116 3ab4_A Aspartokinase; aspartat 37.4 1.1E+02 0.0038 30.2 8.9 69 307-390 263-332 (421)
117 2v25_A Major cell-binding fact 36.6 97 0.0033 26.6 7.5 117 142-272 82-207 (259)
118 2hpg_A ABC transporter, peripl 36.6 1.5E+02 0.005 28.1 9.3 151 119-275 10-213 (327)
119 2dvz_A BUGE, putative exported 36.1 34 0.0012 32.7 4.7 43 128-170 151-197 (314)
120 2zzv_A ABC transporter, solute 35.7 2.6E+02 0.0089 26.5 11.1 132 119-255 35-210 (361)
121 2h9b_A HTH-type transcriptiona 35.6 2.5E+02 0.0084 25.3 14.1 122 139-270 115-249 (312)
122 2vpn_A Periplasmic substrate b 34.7 2.8E+02 0.0097 25.7 13.8 169 120-296 3-217 (316)
123 2ql3_A Probable transcriptiona 34.6 1.9E+02 0.0065 23.7 12.5 139 118-266 5-156 (209)
124 4ddd_A Immunogenic protein; ss 34.5 42 0.0015 31.8 5.1 51 119-170 146-203 (327)
125 1xt8_A Putative amino-acid tra 34.4 1.5E+02 0.0053 26.4 8.8 114 142-271 87-207 (292)
126 2dtj_A Aspartokinase; protein- 33.6 88 0.003 27.0 6.6 33 308-340 97-130 (178)
127 1zbm_A Hypothetical protein AF 33.2 49 0.0017 29.9 5.1 51 118-170 102-152 (280)
128 4ddd_A Immunogenic protein; ss 32.9 2.3E+02 0.0079 26.5 10.1 112 142-256 67-195 (327)
129 2yln_A Putative ABC transporte 32.5 73 0.0025 28.7 6.2 114 142-271 97-216 (283)
130 3tqw_A Methionine-binding prot 32.3 3E+02 0.01 25.3 10.5 109 119-236 4-125 (240)
131 2y7i_A STM4351; arginine-bindi 32.0 1.3E+02 0.0044 25.3 7.4 114 142-271 46-166 (229)
132 1lst_A Lysine, arginine, ornit 31.9 87 0.003 26.7 6.3 115 142-270 44-166 (239)
133 1xs5_A 29 kDa protein, membran 31.9 28 0.00096 32.0 3.2 88 119-215 4-98 (241)
134 1us5_A Putative GLUR0 ligand b 31.7 2.1E+02 0.0071 25.8 9.3 146 117-265 18-187 (314)
135 3hn0_A Nitrate transport prote 31.5 42 0.0014 31.0 4.4 51 118-169 95-150 (283)
136 2fp1_A Chorismate mutase; alph 31.2 19 0.00066 31.6 1.8 25 24-51 93-117 (166)
137 3qsl_A Putative exported prote 30.9 39 0.0013 31.1 4.1 50 119-169 138-194 (346)
138 3tmg_A Glycine betaine, L-prol 30.2 3.2E+02 0.011 25.0 13.7 132 142-279 45-198 (280)
139 2re1_A Aspartokinase, alpha an 30.1 36 0.0012 29.2 3.4 33 308-340 105-138 (167)
140 3cg4_A Response regulator rece 29.5 1.3E+02 0.0044 23.3 6.6 111 218-330 13-125 (142)
141 2q88_A EHUB, putative ABC tran 28.4 53 0.0018 28.6 4.3 113 143-271 54-179 (257)
142 3tvi_A Aspartokinase; structur 28.2 1.7E+02 0.0057 29.5 8.4 127 236-391 223-363 (446)
143 4esw_A Pyrimidine biosynthesis 27.5 1.3E+02 0.0043 28.2 7.1 87 142-236 39-133 (342)
144 3lte_A Response regulator; str 27.4 51 0.0018 25.4 3.7 58 218-277 12-69 (132)
145 1z7m_E ATP phosphoribosyltrans 27.1 2.5E+02 0.0087 25.3 8.6 111 151-278 51-172 (208)
146 2dt9_A Aspartokinase; protein- 26.8 39 0.0013 28.9 3.0 34 307-340 96-130 (167)
147 1p99_A Hypothetical protein PG 26.2 40 0.0014 31.9 3.3 88 118-215 39-134 (295)
148 1sw5_A Osmoprotection protein 24.8 1.2E+02 0.0041 27.7 6.2 138 142-280 35-207 (275)
149 2esn_A Probable transcriptiona 24.3 3.7E+02 0.013 23.7 11.4 122 139-271 126-259 (310)
150 2x7q_A Ca3427, possible thiami 23.9 4.2E+02 0.014 24.2 11.7 130 118-255 15-165 (321)
151 3uif_A Sulfonate ABC transport 23.7 80 0.0027 29.6 4.9 49 118-169 118-173 (348)
152 3grc_A Sensor protein, kinase; 23.5 49 0.0017 26.0 2.8 78 218-297 12-89 (140)
153 4gvo_A LMO2349 protein; struct 23.4 1.7E+02 0.0058 25.4 6.8 81 118-209 117-205 (243)
154 3mst_A Putative nitrate transp 23.3 87 0.003 29.1 4.7 51 118-172 88-140 (244)
155 3kht_A Response regulator; PSI 23.2 80 0.0027 24.8 4.2 79 218-298 11-91 (144)
156 3i42_A Response regulator rece 23.2 46 0.0016 25.6 2.6 78 219-298 10-87 (127)
157 3fxq_A LYSR type regulator of 22.3 4.1E+02 0.014 23.5 12.0 120 139-270 117-248 (305)
158 2xwv_A Sialic acid-binding per 21.9 4.8E+02 0.016 24.2 14.3 172 120-296 5-220 (312)
159 3gl9_A Response regulator; bet 21.5 52 0.0018 25.4 2.6 76 219-296 9-84 (122)
160 2gbb_A Putative chorismate mut 21.4 34 0.0012 29.6 1.6 27 25-56 90-116 (156)
161 3eod_A Protein HNR; response r 21.2 92 0.0031 23.9 4.0 77 217-297 12-88 (130)
162 1tdj_A Biosynthetic threonine 21.0 91 0.0031 32.1 4.9 35 311-346 436-470 (514)
163 2ozz_A Hypothetical protein YH 20.9 1.3E+02 0.0043 27.7 5.4 47 120-168 113-161 (231)
164 2b4a_A BH3024; flavodoxin-like 20.7 2E+02 0.0068 22.2 6.1 106 217-328 20-127 (138)
165 3ksx_A Nitrate transport prote 20.6 1E+02 0.0035 28.4 4.9 49 118-169 130-185 (324)
166 1ve4_A ATP phosphoribosyltrans 20.5 4.7E+02 0.016 23.5 9.1 108 152-278 55-170 (206)
No 1
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=100.00 E-value=4e-86 Score=644.68 Aligned_cols=268 Identities=50% Similarity=0.760 Sum_probs=255.4
Q ss_pred ccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEE
Q 015464 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQL 198 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l 198 (406)
.++||||||+|||||+||+++| +.++|.||++||++|++|++||||||||||++|+|.+|||+|.+++++|+||+.+
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~l 82 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRFG---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETFV 82 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHh---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhcCCcEEEEEEEE
Confidence 4689999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEeecCCCCCccCccEEEechHHHHHHHHHHhh-cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCcee
Q 015464 199 VVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN-LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDIL 277 (406)
Q Consensus 199 ~I~h~L~~~~g~~l~~I~~VySHpqal~QC~~~L~~-~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ygL~il 277 (406)
||+|||++++|.++++|++||||||||+||++||++ |+++.+++.|||+||++|+++++++.|||||+.||++|||+||
T Consensus 83 ~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~~p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~AA~~ygL~il 162 (283)
T 2qmx_A 83 KVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDIL 162 (283)
T ss_dssp ECCCEEEECSSCCTTTCCEEEECHHHHHHTHHHHHHCTTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHTTCEEE
T ss_pred eeeeeEecCCCCChhhCCEEEEeHHHHHHHHHHHHHCCCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHHHHHcCCcee
Confidence 999999999999999999999999999999999999 5999999999999999999987788999999999999999999
Q ss_pred ecCccCCCCCeeEEEEEecCCCCC-------CCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCc
Q 015464 278 AEKIQDDDDNVTRFLILAREPIIA-------GTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLR 350 (406)
Q Consensus 278 ~~~I~d~~~N~TRF~vi~~~~~~~-------~~~~~~ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~ 350 (406)
++||||+++|+|||+||+|++... ..++.+||||+|+++|+||+|+++|++|+.+|||||||||||+++++
T Consensus 163 ~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~~~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~-- 240 (283)
T 2qmx_A 163 KENLADEEWNITRFFCIAHENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKA-- 240 (283)
T ss_dssp ESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCEEEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSST--
T ss_pred cccCcCCCCCeeeEEEEecCccccccccccCCCCCCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCC--
Confidence 999999999999999999986430 12236899999999999999999999999999999999999999875
Q ss_pred cccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHHHHcCCceEEEccccCC
Q 015464 351 VVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYPMD 403 (406)
Q Consensus 351 ~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L~~~~~~vrvLGsYp~~ 403 (406)
|+|.|||||+||.+|++++++|++|++.+.++|+|||||..
T Consensus 241 ------------~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~ 281 (283)
T 2qmx_A 241 ------------FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGVV 281 (283)
T ss_dssp ------------TEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEEEEEEEEE
T ss_pred ------------cceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEEeeeeeCC
Confidence 99999999999999999999999999999999999999965
No 2
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=100.00 E-value=2.2e-85 Score=646.88 Aligned_cols=273 Identities=30% Similarity=0.460 Sum_probs=257.9
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCC--CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccC-CeEEEE
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYP--KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRH-RLHIVG 194 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~--~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~-~l~I~g 194 (406)
...+|+||||+|||||+||+++|+ +.+.++|.||++||++|++|++||||||||||++|+|.+|||+|.++ +++|+|
T Consensus 5 ~~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Ivg 84 (313)
T 3mwb_A 5 SAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIR 84 (313)
T ss_dssp --CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSSCCEEEE
T ss_pred cccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHhhCCCCeEEEE
Confidence 357899999999999999999884 57899999999999999999999999999999999999999999985 899999
Q ss_pred EEEEeeeeEeecCCCCCccCccEEEechHHHHHHHHHHhh--cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHc
Q 015464 195 EVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 272 (406)
Q Consensus 195 E~~l~I~h~L~~~~g~~l~~I~~VySHpqal~QC~~~L~~--~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~y 272 (406)
|+.+||+|||++++|.++++|++||||||||+||++||++ ++++.+++.|||+||++|+++++++.|||||+.||++|
T Consensus 85 E~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIas~~AA~~Y 164 (313)
T 3mwb_A 85 EALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQ 164 (313)
T ss_dssp EEEEECCCEEEECTTCCGGGCSEEEECHHHHTTSHHHHHHHCTTCEEEECSCHHHHHHHTTSTTCSCSEEEECHHHHHHC
T ss_pred EEEEeeeEEEEcCCCCCcccCcEEEEEhHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHhCCCCCccccCcHHHHHHc
Confidence 9999999999999999999999999999999999999987 58999999999999999998877789999999999999
Q ss_pred C-CceeecCccCCCCCeeEEEEEecCCCCCCCCCCceEEEEEEeC-CCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCc
Q 015464 273 G-LDILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLE-EGPGMLFKALAVFALRDINLTKIESRPQRKRPLR 350 (406)
Q Consensus 273 g-L~il~~~I~d~~~N~TRF~vi~~~~~~~~~~~~~ktsi~f~~~-~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~ 350 (406)
| |+||+++|||+++|+|||+||++++..+..++.+||||+|+++ |+||+|+++|++|+.+|||||||||||+++++
T Consensus 165 g~L~il~~~I~D~~~N~TRFlvl~~~~~~~~~~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~-- 242 (313)
T 3mwb_A 165 PGLNVLAEDIGDNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYL-- 242 (313)
T ss_dssp TTCEEEESCCCSCTTCEEEEEEEECSCCCCCCCSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSST--
T ss_pred CChhhhhhcccCCCcceeEEEEEecCCCCCCCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCC--
Confidence 9 9999999999999999999999987545556789999999997 99999999999999999999999999999875
Q ss_pred cccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHHHHcCCceEEEccccCCC
Q 015464 351 VVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYPMDT 404 (406)
Q Consensus 351 ~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L~~~~~~vrvLGsYp~~~ 404 (406)
|+|.||||++||.+|++++++|++|++.|.++|+|||||+..
T Consensus 243 ------------~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~~ 284 (313)
T 3mwb_A 243 ------------GHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYARAD 284 (313)
T ss_dssp ------------TSEEEEEEEESCTTSHHHHHHHHHHHHHCTTCEEEEEEECTT
T ss_pred ------------ccEEEEEEEeCCCCcHHHHHHHHHHHHhcCcEEEEeeeecCc
Confidence 999999999999999999999999999999999999999854
No 3
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=100.00 E-value=9.4e-85 Score=630.01 Aligned_cols=261 Identities=27% Similarity=0.389 Sum_probs=249.7
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCCCC--ceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEE
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYPKC--ETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGE 195 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~~~--~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE 195 (406)
.+++||||||+|||||+||+++|+.. ++++|.||++||++|++|++||||||||||++|+|.+|||+|.+++++|+||
T Consensus 2 ~~~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE 81 (267)
T 2qmw_A 2 NAMQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGE 81 (267)
T ss_dssp --CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEEEEE
T ss_pred CccEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhcCCcEEEEE
Confidence 35789999999999999999999864 4999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeEeecCCCCCccCccEEEechHHHHHHHHHHhhcCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCc
Q 015464 196 VQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLD 275 (406)
Q Consensus 196 ~~l~I~h~L~~~~g~~l~~I~~VySHpqal~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ygL~ 275 (406)
+.+||+|||++++|.++++|++||||||||+||++||++++++.++++|||+||++|++ + .|||||+.||++|||+
T Consensus 82 ~~l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~p~~~~~~~~sTA~AA~~v~~---~-~AAIas~~AA~~ygL~ 157 (267)
T 2qmw_A 82 IRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVDSTIQSLTKIEN---G-VAAIAPLGSGEAYGFT 157 (267)
T ss_dssp EEEECCEEEECCSSCCSTTCCEEEECHHHHHHSHHHHHHTTCEEEECSSHHHHHHTCBT---T-EEEEEETTTSGGGTCC
T ss_pred EEEEeeeEEEecCCCCHhhCCEEEEEhHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHcC---C-CcEECCHHHHHHCCCc
Confidence 99999999999999999999999999999999999999999999999999999999986 3 9999999999999999
Q ss_pred eeecCccCCCCCeeEEEEEecCCCCCCCCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccc
Q 015464 276 ILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTL---EEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVV 352 (406)
Q Consensus 276 il~~~I~d~~~N~TRF~vi~~~~~~~~~~~~~ktsi~f~~---~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~ 352 (406)
||+++|||+++|+|||+||++++ .+ + .+||||+|++ +|+||+|+++|++|+.+|||||||||||+++++
T Consensus 158 il~~~I~D~~~N~TRF~vl~~~~-~~--~-~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~---- 229 (267)
T 2qmw_A 158 PIDTHIEDYPHNVTRFLVIKNQQ-QF--D-QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL---- 229 (267)
T ss_dssp EEEECCCSCSCCEEEEEEEESCC-CC--C-SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSST----
T ss_pred EeeccccCCCCCceEEEEEecCC-CC--C-CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCC----
Confidence 99999999999999999999987 33 3 7899999999 899999999999999999999999999999875
Q ss_pred cCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHHHHcCCceEEEcccc
Q 015464 353 DDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYP 401 (406)
Q Consensus 353 ~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L~~~~~~vrvLGsYp 401 (406)
|+|.||||++ |.+|++++++|++|++.+.++|+|||||
T Consensus 230 ----------~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~kiLGsY~ 267 (267)
T 2qmw_A 230 ----------GMYRFFVQAD-SAITTDIKKVIAILETLDFKVEMIGAFN 267 (267)
T ss_dssp ----------TCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred ----------ccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEEEEeeeC
Confidence 9999999999 9999999999999999999999999997
No 4
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=100.00 E-value=5e-82 Score=626.78 Aligned_cols=268 Identities=24% Similarity=0.334 Sum_probs=248.2
Q ss_pred CccEEEEEcCCCcHHHHHHHHHC--------CCCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccC-
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAY--------PKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRH- 188 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f--------~~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~- 188 (406)
.+++||||||+|||||+||+++| ++++.++|.||++||++|++|+ ||||||||||++|+|.+|||+|.++
T Consensus 5 ~~~~VaylGp~GtfS~~Aa~~~~~~~~~f~~~~~~~~p~~s~~~vf~aV~~g~-d~gVVPIENS~eG~V~~tlDlL~~~~ 83 (329)
T 3luy_A 5 SARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDALIDAK 83 (329)
T ss_dssp CCEEEEEESSTTSHHHHHHHHHHHHTGGGCTTCEEEEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHHHTCS
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhccccCCCCceEEeCCCHHHHHHHHHcCC-CEEEEEEcccCCCchHHHHHHhhccC
Confidence 56799999999999999999875 2568999999999999999999 9999999999999999999999875
Q ss_pred CeEEEEEEEEeeeeEeecCCCCCccCccEEEechHHHHHHHHHHhhcCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHh
Q 015464 189 RLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQA 268 (406)
Q Consensus 189 ~l~I~gE~~l~I~h~L~~~~g~~l~~I~~VySHpqal~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~a 268 (406)
+++|+||+.+||+|||++.+|.++++|++||||||||+||++||++++++.+++.|||+||+.+++ +.|||||+.|
T Consensus 84 ~l~I~gE~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~~~~v~~~STA~AA~~v~~----~~AAIas~~A 159 (329)
T 3luy_A 84 DLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHGLAQCKRFIAEHRLSTQPATSNAAACRDLIP----GEIAFGPAIC 159 (329)
T ss_dssp SCEEEEEEEEECCCEEEEETTCCGGGCCEEEECHHHHHHTHHHHHHTTCEEEECSSHHHHHHTCCT----TEEEEECTTH
T ss_pred CcEEEEEEEEEeeeeeecCCCCCcccCcEEEEcHHHHHHHHHHHHHcCCeEEeccCHHHHHHHhCC----CCceeCCHHH
Confidence 899999999999999999999999999999999999999999999999999999999999998753 5899999999
Q ss_pred HHHcCCceeecCccCCCCCeeEEEEEecCCCC-------CCCCCCceEEEEEEeC--CCcchHHHHHHHHHhCCceeeee
Q 015464 269 AEIYGLDILAEKIQDDDDNVTRFLILAREPII-------AGTDRPYKTSIVFTLE--EGPGMLFKALAVFALRDINLTKI 339 (406)
Q Consensus 269 A~~ygL~il~~~I~d~~~N~TRF~vi~~~~~~-------~~~~~~~ktsi~f~~~--~~pGaL~~~L~~Fa~~~INLtkI 339 (406)
|++|||+||+++|||+++|+|||+||+|++.. ....+.+|||++|.++ |+||+|+++|++|+.+|||||||
T Consensus 160 AelYgL~iLa~~I~D~~~N~TRFlvl~~~~~~~~~~~~~~~~~~~~kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkI 239 (329)
T 3luy_A 160 GELYDITRIGTAIQDYQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSF 239 (329)
T ss_dssp HHHSSEEEEESSCCSCSCCEEEEEEEECHHHHHHHTHHHHHTTCCCEEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEE
T ss_pred HHHcCCccccccccCCCcceeEEEEEeccccccccccCCCCCCCCCceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEE
Confidence 99999999999999999999999999997532 1112347888888776 58999999999999999999999
Q ss_pred EeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHHHHcCCceEEEccccCCC
Q 015464 340 ESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYPMDT 404 (406)
Q Consensus 340 ESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L~~~~~~vrvLGsYp~~~ 404 (406)
||||+++++ |+|.|||||+||.+|++++++|++|++.|.++|+|||||+..
T Consensus 240 ESRP~~~~~--------------~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~kiLGsYp~~~ 290 (329)
T 3luy_A 240 ISRPIKGRT--------------GTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKTLAVYPRRE 290 (329)
T ss_dssp EEEEETTEE--------------EEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEEEEEEECCC
T ss_pred EeeECCCCC--------------ccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEEEeeccCCC
Confidence 999999865 999999999999999999999999999999999999999865
No 5
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=99.82 E-value=1.7e-20 Score=190.06 Aligned_cols=83 Identities=30% Similarity=0.436 Sum_probs=78.5
Q ss_pred CCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHH
Q 015464 302 GTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQ 381 (406)
Q Consensus 302 ~~~~~~ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~ 381 (406)
..++.+||||+|+++|+||+|+++|++|+.+|||||||||||+++++ |+|.|||||+ |.++++++
T Consensus 28 ~~tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~--------------~eY~FfVD~e-h~~d~~v~ 92 (429)
T 1phz_A 28 NSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNK--------------DEYEFFTYLD-KRTKPVLG 92 (429)
T ss_dssp CCCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCT--------------TEEEEEECBC-GGGHHHHH
T ss_pred CCCCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCC--------------ccEEEEEEEe-eCCCHHHH
Confidence 34567899999999999999999999999999999999999999865 9999999999 99999999
Q ss_pred HHHHHHHHc-CCceEEEcc
Q 015464 382 FALGHLQEF-ATFLRVLGC 399 (406)
Q Consensus 382 ~al~~L~~~-~~~vrvLGs 399 (406)
++|++|+.. +.++|+||+
T Consensus 93 ~AL~eL~~~~~~~vkiLGs 111 (429)
T 1phz_A 93 SIIKSLRNDIGATVHELSR 111 (429)
T ss_dssp HHHHHHHHTTCCCEEEEET
T ss_pred HHHHHHHhhccceEEECCC
Confidence 999999999 999999999
No 6
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=99.28 E-value=1.5e-13 Score=111.60 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=65.2
Q ss_pred CchhhhhHHhhhcccchHHHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhccCCCCccccccccchhc
Q 015464 27 NRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDSQSSGFHKDLNLLPTLVY 98 (406)
Q Consensus 27 ~l~~lR~~ID~iD~~~~~l~~Ll~~~~R~~~~~~v~--K-----~-~~P~RE~a~i~~rl~~~~~~~l~~d~i~l~~~I~ 98 (406)
+|.+||.+||+||.+ |++||++ |+.++.+|| | | |+|+|| +.+++++.+...++++++.++ .||
T Consensus 4 ~L~~lR~~ID~iD~~---l~~Ll~~--R~~~~~~i~~~K~~~~~~i~dp~RE-~~vl~~~~~~~~~~l~~~~i~---~if 74 (90)
T 2d8d_A 4 RIQALRKEVDRVNRE---ILRLLSE--RGRLVQEIGRLQTELGLPHYDPKRE-EEMLAYLTAENPGPFPDETIR---KLF 74 (90)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHHTCCSCCHHHH-HHHHHHHHHHCCSSSCHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHCCCCCcCHHHH-HHHHHHHHHHccCCCCHHHHH---HHH
Confidence 589999999999999 9999999 999999999 4 6 999999 888899888789999999999 999
Q ss_pred cccccccc
Q 015464 99 GQIAEPLS 106 (406)
Q Consensus 99 ReImr~~~ 106 (406)
+.||..|.
T Consensus 75 ~~ii~~s~ 82 (90)
T 2d8d_A 75 KEIFKASL 82 (90)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHH
Confidence 99976553
No 7
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=99.22 E-value=2.4e-13 Score=114.28 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=65.7
Q ss_pred CCchhhhhHHhhhcccchHHHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhh-ccCCCCccccccccch
Q 015464 26 PNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQD-SQSSGFHKDLNLLPTL 96 (406)
Q Consensus 26 ~~l~~lR~~ID~iD~~~~~l~~Ll~~~~R~~~~~~v~--K-----~-~~P~RE~a~i~~rl~~-~~~~~l~~d~i~l~~~ 96 (406)
.+|.+||.+||+||.+ |++||++ |+.++.+|| | | |+|+|| +.+++++.+ ++.++++++.++ .
T Consensus 5 ~~L~~lR~~ID~iD~~---L~~LL~~--R~~~~~~v~~~K~~~~~~i~dp~RE-~~vl~~~~~~a~~~~l~~~~i~---~ 75 (109)
T 1ecm_A 5 NPLLALREKISALDEK---LLALLAE--RRELAVEVGKAKLLSHRPVRDIDRE-RDLLERLITLGKAHHLDAHYIT---R 75 (109)
T ss_dssp CHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHTTCCSCCHHHH-HHHHHHHHHHHHHHTCCHHHHH---H
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHcCCCCCCHHHH-HHHHHHHHHHhHhCCCCHHHHH---H
Confidence 3699999999999999 9999999 999999999 4 6 999999 788888877 488899999999 9
Q ss_pred hcccccccccc
Q 015464 97 VYGQIAEPLSI 107 (406)
Q Consensus 97 I~ReImr~~~~ 107 (406)
||+.||..+..
T Consensus 76 if~~ii~~s~~ 86 (109)
T 1ecm_A 76 LFQLIIEDSVL 86 (109)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999877553
No 8
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=99.21 E-value=6.2e-13 Score=110.36 Aligned_cols=78 Identities=10% Similarity=0.057 Sum_probs=68.6
Q ss_pred CCCCCCchhhhhHHhhhcccchHHHHHhhhhcccccccccC--C----C-CCCchhhHHHHHhhhh-ccCCCCccccccc
Q 015464 22 PDLVPNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R----P-YTPDVQSSEANERSQD-SQSSGFHKDLNLL 93 (406)
Q Consensus 22 ~~~~~~l~~lR~~ID~iD~~~~~l~~Ll~~~~R~~~~~~v~--K----~-~~P~RE~a~i~~rl~~-~~~~~l~~d~i~l 93 (406)
|....+|.+||.+||+||.+ |++||++ |+.++.+|| | | |+|+|| +.+++++.. ++.++|+++.++
T Consensus 4 p~~~~~L~~lR~~ID~iD~~---il~LL~~--R~~~~~~i~~~K~~~~~i~dp~RE-~~vl~~~~~~a~~~~l~~~~i~- 76 (101)
T 3ret_A 4 PEDCTGLADIREAIDRIDLD---IVQALGR--RMDYVKAASRFEASEAAIPAPERV-AAMLPERARWAEENGLDAPFVE- 76 (101)
T ss_dssp GGGCCSHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHGGGCSSGGGTTCHHHH-HHHHHHHHHHHHHTTSCHHHHH-
T ss_pred chhhhhHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHhhcCCCCCCHHHH-HHHHHHHHHHhhhCCCCHHHHH-
Confidence 45567899999999999999 9999999 999999999 5 5 999999 778888777 567899999999
Q ss_pred cchhccccccccccc
Q 015464 94 PTLVYGQIAEPLSIM 108 (406)
Q Consensus 94 ~~~I~ReImr~~~~~ 108 (406)
.||+.||..|...
T Consensus 77 --~if~~ii~~s~~~ 89 (101)
T 3ret_A 77 --GLFAQIIHWYIAE 89 (101)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 9999998776543
No 9
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=99.11 E-value=2.1e-12 Score=109.51 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=66.9
Q ss_pred CCCCCchhhhhHHhhhcccchHHHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhc-cCCCCccccccc
Q 015464 23 DLVPNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDS-QSSGFHKDLNLL 93 (406)
Q Consensus 23 ~~~~~l~~lR~~ID~iD~~~~~l~~Ll~~~~R~~~~~~v~--K-----~-~~P~RE~a~i~~rl~~~-~~~~l~~d~i~l 93 (406)
....+|.+||.+||+||.+ |++||++ |+.++.+|| | | |+|+|| +.+++++... ..++|+++.++
T Consensus 9 ~~~~~L~~lR~~ID~ID~~---il~LL~~--R~~~~~~I~~~K~~~~~~i~dp~RE-~~vl~~~~~~a~~~~l~~~~i~- 81 (114)
T 3rmi_A 9 KILSELAYLRQSIDNFDIT---LIHILAE--RFRCTQAIGRLKARYNLPAVDPLRE-QYQIKRLRKLAIDTHFDPDFAE- 81 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHTTCCSCCHHHH-HHHHHHHHHHHHHTTCCHHHHH-
T ss_pred cchhHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHCCCCCcCHHHH-HHHHHHHHHHHHhCCCCHHHHH-
Confidence 3345799999999999999 9999999 999999999 4 6 999999 7788887775 68999999999
Q ss_pred cchhcccccccccc
Q 015464 94 PTLVYGQIAEPLSI 107 (406)
Q Consensus 94 ~~~I~ReImr~~~~ 107 (406)
.||+.||..+..
T Consensus 82 --~if~~Ii~~S~~ 93 (114)
T 3rmi_A 82 --KFLKFIIKEVVH 93 (114)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 999999877653
No 10
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=99.05 E-value=3e-11 Score=122.18 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=63.9
Q ss_pred CchhhhhHHhhhcccchHHHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhccCCCCccccccccchhc
Q 015464 27 NRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDSQSSGFHKDLNLLPTLVY 98 (406)
Q Consensus 27 ~l~~lR~~ID~iD~~~~~l~~Ll~~~~R~~~~~~v~--K-----~-~~P~RE~a~i~~rl~~~~~~~l~~d~i~l~~~I~ 98 (406)
+|.+||.+||+||.+ |++||++ |++++.+|| | | |+|+|| +++++|+.+...++++++.++ .||
T Consensus 29 ~L~~lR~~ID~ID~~---il~LL~e--R~~~~~~Va~~K~~~g~~i~dp~RE-~~vl~~~~~~~~~~l~~~~i~---~if 99 (385)
T 3nvt_A 29 NLEELRTQVDQLNID---LLELISK--RANLVQEIGKIKGTQGSLRFDPLRE-REMLNTILAANEGPFEDSTVQ---KLF 99 (385)
T ss_dssp ---CCTTTTTHHHHH---HHHHHHH--HHHHHHHHHHHCC-----CCCHHHH-HHHHHHHHHHCCSSSCHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHhhhhcCCCCCChHHH-HHHHHHHHHhccCCCCHHHHH---HHH
Confidence 699999999999999 9999999 999999999 5 6 999999 888899988888999999999 999
Q ss_pred cccccccccc
Q 015464 99 GQIAEPLSIM 108 (406)
Q Consensus 99 ReImr~~~~~ 108 (406)
|+||..+...
T Consensus 100 r~Ii~~s~~~ 109 (385)
T 3nvt_A 100 KEIFKAGLEL 109 (385)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999775543
No 11
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=99.03 E-value=3.6e-12 Score=106.30 Aligned_cols=71 Identities=8% Similarity=0.205 Sum_probs=65.0
Q ss_pred CchhhhhHHhhhcccchHHH--------HHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhccCC-CCccc
Q 015464 27 NRCGFGLDLRVLNKWECTCV--------GVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDSQSS-GFHKD 89 (406)
Q Consensus 27 ~l~~lR~~ID~iD~~~~~l~--------~Ll~~~~R~~~~~~v~--K-----~-~~P~RE~a~i~~rl~~~~~~-~l~~d 89 (406)
+|+++|.+||+||.+ |+ +||++ |+.++.+|| | | |+|+|| +.+++++.....+ +++++
T Consensus 4 ~L~~lR~~ID~ID~~---il~~~~~~~~~Ll~e--R~~l~~~Va~~K~~~g~pi~dp~RE-~~vl~~~~~~~~~~~l~~~ 77 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNK---ILKARWPWAEKLIAE--RNSLAKDVAEIKNQLGIPINDPERE-KYIYDRIRKLCKEHNVDEN 77 (104)
T ss_dssp HHHHHHHHHHHHHHH---HHTSSSSSCCCCHHH--HHHHHHHHHHHHHHHTSCSCCHHHH-HHHHHHHHHHHHHHTSCSH
T ss_pred HHHHHHHHHHHHHHH---HHHcccccHHHHHHH--HHHHHHHHHHHHHHCCCCCcChHHH-HHHHHHHHHHhhcCCCCHH
Confidence 599999999999999 99 99999 999999999 4 6 999999 8888998887777 99999
Q ss_pred cccccchhccccccccc
Q 015464 90 LNLLPTLVYGQIAEPLS 106 (406)
Q Consensus 90 ~i~l~~~I~ReImr~~~ 106 (406)
.++ .||++||..+.
T Consensus 78 ~i~---~if~~ii~~s~ 91 (104)
T 2gtv_X 78 IGI---KIFQRLIEHNK 91 (104)
T ss_dssp HHH---HHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHH
Confidence 999 99999986654
No 12
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=98.95 E-value=4.1e-11 Score=97.40 Aligned_cols=66 Identities=18% Similarity=0.145 Sum_probs=57.7
Q ss_pred CCCchhhhhHHhhhcccchHHHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhccCCCCccccccccch
Q 015464 25 VPNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDSQSSGFHKDLNLLPTL 96 (406)
Q Consensus 25 ~~~l~~lR~~ID~iD~~~~~l~~Ll~~~~R~~~~~~v~--K-----~-~~P~RE~a~i~~rl~~~~~~~l~~d~i~l~~~ 96 (406)
.++|.+||.+||+||.+ |++||++ |+.++.+|| | | |+|+|| +++++++.+... +++++++ .
T Consensus 11 ~~~L~~lR~~ID~iD~~---Ll~LL~~--R~~~~~~Ig~~K~~~~~~i~dp~RE-~~vl~~~~~~a~--~~p~~~e---~ 79 (90)
T 2vkl_A 11 VPEIDTLREEIDRLDAE---ILALVKR--RAEVSKAIGKARMASGGTRLVHSRE-MKVIERYSELGP--DGKDLAI---L 79 (90)
T ss_dssp --CHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHHTCCCCTTTHH-HHHHHHHHTTCH--HHHHHHH---H
T ss_pred cccHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHCCCCCCChHHH-HHHHHHHHHHcc--CCHHHHH---H
Confidence 45799999999999999 9999999 999999999 4 6 999999 888888876443 8899998 9
Q ss_pred hcccc
Q 015464 97 VYGQI 101 (406)
Q Consensus 97 I~ReI 101 (406)
|||.+
T Consensus 80 i~r~~ 84 (90)
T 2vkl_A 80 LLRLG 84 (90)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99887
No 13
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=98.91 E-value=6.6e-11 Score=96.37 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=54.6
Q ss_pred CCCchhhhhHHhhhcccchHHHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhccCCCCccccccccch
Q 015464 25 VPNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDSQSSGFHKDLNLLPTL 96 (406)
Q Consensus 25 ~~~l~~lR~~ID~iD~~~~~l~~Ll~~~~R~~~~~~v~--K-----~-~~P~RE~a~i~~rl~~~~~~~l~~d~i~l~~~ 96 (406)
..+|.+||.+||+||.+ |++||++ |+.++.+|| | | |+|+|| +++++++.. ++ .
T Consensus 16 ~~~L~~lR~~ID~ID~~---Ll~LL~~--R~~~~~~Ig~~K~~~~~~i~dp~RE-~~vl~~~~~----------i~---~ 76 (91)
T 1ybz_A 16 STTLKLLRKEIDKIDNQ---IISLLKK--RLEIAQAIGKIKKELNLPIEDRKRE-EEVLRRAGE----------FR---E 76 (91)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHTTCCSCCHHHH-HHHHHHHGG----------GH---H
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHCCCCCcChHHH-HHHHHHHHH----------HH---H
Confidence 44699999999999999 9999999 999999999 4 6 999999 888888765 56 8
Q ss_pred hcccccccc
Q 015464 97 VYGQIAEPL 105 (406)
Q Consensus 97 I~ReImr~~ 105 (406)
|||+||..|
T Consensus 77 if~~Ii~~s 85 (91)
T 1ybz_A 77 IFEKILEVS 85 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999997554
No 14
>2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str}
Probab=97.78 E-value=6.3e-07 Score=79.72 Aligned_cols=57 Identities=7% Similarity=0.007 Sum_probs=50.5
Q ss_pred HHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhccCC-CCccccccccchhcccccccccc
Q 015464 45 CVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDSQSS-GFHKDLNLLPTLVYGQIAEPLSI 107 (406)
Q Consensus 45 l~~Ll~~~~R~~~~~~v~--K-----~-~~P~RE~a~i~~rl~~~~~~-~l~~d~i~l~~~I~ReImr~~~~ 107 (406)
|++||++ |+.++.+|| | | |+|+|| +++++++.+...+ +++++.++ .|||+||..+..
T Consensus 6 Ll~LL~e--R~~la~~Va~~K~~~g~pI~Dp~RE-~evL~~l~~~a~~~gL~~~~i~---~ifr~Ii~~S~~ 71 (156)
T 2gbb_A 6 TAPLINE--RLSYMKDVAGYKAENHLPIEDRIQE-EKVINSAMAQAESLGLNGESIK---PLMVAQINAAKA 71 (156)
T ss_dssp SHHHHHH--HHTTHHHHHHHHHHTTCCSCCHHHH-HHHHHHHHHHHHHTTBCHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHCCCCCCChHHH-HHHHHHHHHHhhcCCCCHHHHH---HHHHHHHHHHHH
Confidence 8999999 999999999 4 6 999999 8888888886666 99999999 999999977653
No 15
>2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A*
Probab=97.70 E-value=1.5e-06 Score=78.14 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=49.7
Q ss_pred HHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhh-ccCCCCccccccccchhcccccccccc
Q 015464 45 CVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQD-SQSSGFHKDLNLLPTLVYGQIAEPLSI 107 (406)
Q Consensus 45 l~~Ll~~~~R~~~~~~v~--K-----~-~~P~RE~a~i~~rl~~-~~~~~l~~d~i~l~~~I~ReImr~~~~ 107 (406)
|++||++ |+.++.+|| | | |+|+|| +++++++.. +..++|+++.++ .|||+||..+..
T Consensus 9 Lv~LLae--R~~la~~Va~~K~~~~~pI~dp~RE-~eVL~r~~~~a~~~gL~~~~i~---~ifr~Ii~~S~~ 74 (166)
T 2fp1_A 9 LVDAAAE--RLEVADPVAAFKWRAQLPIEDSGRV-EQQLAKLGEDARSQHIDPDYVT---RVFDDQIRATEA 74 (166)
T ss_dssp HHHHHHH--HHHTHHHHHHHHHHHTCCSCCHHHH-HHHHHHHHHHHHHTTCCHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHCCCCCCChHHH-HHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHHHHH
Confidence 9999999 999999999 5 6 999999 778888777 445899999999 999999976543
No 16
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.83 E-value=0.0058 Score=47.30 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=49.3
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHH
Q 015464 307 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGH 386 (406)
Q Consensus 307 ~ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~ 386 (406)
..+.|.+..+|+||.|.++.++|+..|+|+..+...+... .....|-+++. +...+.++++.
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~---------------~~~~~i~v~~~---~~~~l~~l~~~ 65 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG---------------IFTCNLMIFVK---NTDKLTTLMDK 65 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS---------------EEEEEEEEEES---SHHHHHHHHHH
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC---------------EEEEEEEEEEC---CHHHHHHHHHH
Confidence 4567888889999999999999999999999999876431 02233333332 34677888888
Q ss_pred HHHcC
Q 015464 387 LQEFA 391 (406)
Q Consensus 387 L~~~~ 391 (406)
|++..
T Consensus 66 L~~~~ 70 (88)
T 2ko1_A 66 LRKVQ 70 (88)
T ss_dssp HTTCT
T ss_pred HhcCC
Confidence 87654
No 17
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.59 E-value=0.016 Score=45.27 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=33.6
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCC
Q 015464 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQR 345 (406)
Q Consensus 308 ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~ 345 (406)
+..|.+..+|+||.|.++.++|+.+|+|+..+......
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~ 42 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD 42 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc
Confidence 45677888999999999999999999999999887643
No 18
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=96.26 E-value=0.028 Score=50.05 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=51.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHHH
Q 015464 309 TSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQ 388 (406)
Q Consensus 309 tsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L~ 388 (406)
-.|.+.+.|+||.|.++.+.|+.+|+|+..+...|.... .-..+.+-+++ ++..+..+.++|+
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~---------------~~sriti~V~~--d~~~leqI~kqL~ 66 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDP---------------TLSRMTIQTVG--DEKVLEQIEKQLH 66 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCS---------------SEEEEEEEEES--CHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCC---------------CEEEEEEEEec--cHHHHHHHHHHHc
Confidence 456667789999999999999999999999999997532 23455555664 3577888888888
Q ss_pred HcCC
Q 015464 389 EFAT 392 (406)
Q Consensus 389 ~~~~ 392 (406)
+.-.
T Consensus 67 Kl~d 70 (164)
T 2f1f_A 67 KLVD 70 (164)
T ss_dssp HSTT
T ss_pred CCCC
Confidence 7544
No 19
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=95.95 E-value=0.042 Score=48.96 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=51.6
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHH
Q 015464 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHL 387 (406)
Q Consensus 308 ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L 387 (406)
|-.|.+.+.|+||.|.++.+.|+.+|+|+..+...|+... .-..+.+-+++. +..+..+.++|
T Consensus 4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~---------------g~sritivV~~d--~~~leql~kQL 66 (165)
T 2pc6_A 4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDP---------------TLSRMTLVTNGP--DEIVEQITKQL 66 (165)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSST---------------TEEEEEEEEEEC--HHHHHHHHHHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCC---------------CEEEEEEEEecc--HHHHHHHHHHh
Confidence 4456777889999999999999999999999999997632 233444455553 57778888888
Q ss_pred HHcCC
Q 015464 388 QEFAT 392 (406)
Q Consensus 388 ~~~~~ 392 (406)
.+.-.
T Consensus 67 ~Kl~d 71 (165)
T 2pc6_A 67 NKLIE 71 (165)
T ss_dssp HHSTT
T ss_pred cCCCC
Confidence 76544
No 20
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=95.91 E-value=0.044 Score=50.00 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=52.6
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHH
Q 015464 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHL 387 (406)
Q Consensus 308 ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L 387 (406)
+-.|.+.++|+||.|.++.+.|+.+|+|+..+-.-|+... .-..+.|-+++. +..+..+.++|
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~---------------gisRitIvV~g~--e~~ieqL~kQL 91 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETP---------------GLSRLVIMVKGD--DKTIEQIEKQA 91 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSST---------------TEEEEEEEEEEC--TTHHHHHHHHH
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCC---------------CEEEEEEEEECC--HHHHHHHHHHh
Confidence 3456677889999999999999999999999999887542 234454555553 56777778888
Q ss_pred HHcCCceEE
Q 015464 388 QEFATFLRV 396 (406)
Q Consensus 388 ~~~~~~vrv 396 (406)
.+.-.-+++
T Consensus 92 ~KLidVikV 100 (193)
T 2fgc_A 92 YKLVEVVKV 100 (193)
T ss_dssp TTSTTEEEE
T ss_pred cCcCceEEE
Confidence 765443443
No 21
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=93.48 E-value=0.12 Score=48.01 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=44.6
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHH
Q 015464 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHL 387 (406)
Q Consensus 308 ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L 387 (406)
..+|.+...|+||.|.+++++++.+++|+..+..+.....+ .......+||++.. .+++++++|
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~------------~ng~A~I~IEV~d~----~Le~LL~kL 67 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGE------------HEGKALIYFEIEGG----DFEKILERV 67 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSST------------TTTEEEEEEEECSS----CHHHHHHHH
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCC------------cCCEEEEEEEECCC----CHHHHHHHH
Confidence 46788899999999999999999999999999987654211 00123334777643 566777777
Q ss_pred HHc
Q 015464 388 QEF 390 (406)
Q Consensus 388 ~~~ 390 (406)
++.
T Consensus 68 rkI 70 (223)
T 1y7p_A 68 KTF 70 (223)
T ss_dssp HTC
T ss_pred hCC
Confidence 643
No 22
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=92.66 E-value=0.63 Score=39.92 Aligned_cols=62 Identities=21% Similarity=0.334 Sum_probs=48.4
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHHHHc
Q 015464 311 IVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEF 390 (406)
Q Consensus 311 i~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L~~~ 390 (406)
|-+...|++|.|.+++++++.+++|+..++.+|. + + +|+.++. .....+..+...++..
T Consensus 3 ~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g------------------~-i~~~~~~-~~~~~~~~L~~~l~~i 61 (190)
T 2jhe_A 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-G------------------R-IYLNFAE-LEFESFSSLMAEIRRI 61 (190)
T ss_dssp EEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-T------------------E-EEEEECC-CCHHHHHHHHHHHHHS
T ss_pred EEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-C------------------E-EEEEEEe-CCHHHHHHHHHHHHcC
Confidence 4566789999999999999999999999999874 1 2 6777774 3445677777777776
Q ss_pred CCc
Q 015464 391 ATF 393 (406)
Q Consensus 391 ~~~ 393 (406)
...
T Consensus 62 ~~~ 64 (190)
T 2jhe_A 62 AGV 64 (190)
T ss_dssp TTE
T ss_pred CCe
Confidence 553
No 23
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=91.99 E-value=1.6 Score=38.64 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=31.7
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeee
Q 015464 307 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRP 343 (406)
Q Consensus 307 ~ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP 343 (406)
..+.|.+..+|+||.|+++.+.|+.+|+|+..+...-
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t 128 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT 128 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhc
Confidence 3455667779999999999999999999999887764
No 24
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=91.42 E-value=0.77 Score=38.80 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=29.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeee
Q 015464 309 TSIVFTLEEGPGMLFKALAVFALRDINLTKIESRP 343 (406)
Q Consensus 309 tsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP 343 (406)
..|.+.++|+||.|.++.+.|+.+|||+..|..-+
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 34556789999999999999999999999986544
No 25
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=91.19 E-value=0.83 Score=38.57 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=30.1
Q ss_pred EEEE-EEeCCCcchHHHHHHHHHhCCceeeeeEeee
Q 015464 309 TSIV-FTLEEGPGMLFKALAVFALRDINLTKIESRP 343 (406)
Q Consensus 309 tsi~-f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP 343 (406)
++++ +.++++||.|.++++.++++|||+..+.+.+
T Consensus 72 ~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~ 107 (144)
T 2f06_A 72 TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA 107 (144)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc
Confidence 4554 4789999999999999999999998877775
No 26
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=89.68 E-value=5.9 Score=33.90 Aligned_cols=99 Identities=13% Similarity=0.026 Sum_probs=63.7
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEE
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQ 197 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~ 197 (406)
...+|++. .|+..+......++...+..+.+..+++++|.+|++|+++.+-.. ....+. ......+.+.+...
T Consensus 108 ~g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~-~~~~~~----~~~~~~l~~~~~~~ 180 (226)
T 1wdn_A 108 DGKVVAVK--SGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPN-ILYFIK----TAGNGQFKAVGDSL 180 (226)
T ss_dssp TTCEEEEE--TTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSCSEEEEEHHH-HHHHHH----TTTTTTEEEEEEEE
T ss_pred CCCEEEEE--cCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCcCEEEeCcHH-HHHHHH----hCCCCceEEecCCc
Confidence 44678885 566666666666777888999999999999999999998876321 111010 00113577777665
Q ss_pred EeeeeEeecCCCCCccCccEEEechHHHHHHHHHHhh
Q 015464 198 LVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (406)
Q Consensus 198 l~I~h~L~~~~g~~l~~I~~VySHpqal~QC~~~L~~ 234 (406)
.+...+++..++ +|+-..+..++|.+
T Consensus 181 ~~~~~~~~~~k~-----------~~~l~~~~~~~l~~ 206 (226)
T 1wdn_A 181 EAQQYGIAFPKG-----------SDELRDKVNGALKT 206 (226)
T ss_dssp EEEEEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred ccCceEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 556666766554 35555555666654
No 27
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=87.53 E-value=1.6 Score=39.62 Aligned_cols=99 Identities=18% Similarity=0.186 Sum_probs=64.5
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEE
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQ 197 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~ 197 (406)
...+|++.. |+..+......++..+++..++.++++++|.+|++|+++..-. .....+.. ....++.+.+...
T Consensus 138 ~g~~i~v~~--g~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~-~~~~~~~~----~~~~~l~~~~~~~ 210 (267)
T 3mpk_A 138 DGRTVALVR--NSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQI-SASYYVNR----YFAGKLRIASALD 210 (267)
T ss_dssp TTCEEEEET--TCTHHHHHHHHCTTSEEEEESSHHHHHHHHHHTSCSEEEEEHH-HHHHHHHH----HCTTTEEEEEECS
T ss_pred CCCEEEEeC--CchhHHHHHHhCCCcEEEEeCCHHHHHHHHHcCCCCEEEecHH-HHHHHHHh----cCCCceEEEeccC
Confidence 346898874 5544555555788889999999999999999999999988632 11111111 1123577877654
Q ss_pred E-eeeeEeecCCCCCccCccEEEechHHHHHHHHHHhh
Q 015464 198 L-VVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (406)
Q Consensus 198 l-~I~h~L~~~~g~~l~~I~~VySHpqal~QC~~~L~~ 234 (406)
. +...+++.+++ +|+-..+..++|.+
T Consensus 211 ~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 237 (267)
T 3mpk_A 211 LPPAEIALATTRG-----------QTELMSILNKALYS 237 (267)
T ss_dssp SCCEEEEEEEETT-----------CHHHHHHHHHHHHT
T ss_pred CCceeEEEEEcCC-----------CHHHHHHHHHHHHh
Confidence 3 45555655543 56666667777765
No 28
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=87.38 E-value=5.5 Score=35.24 Aligned_cols=85 Identities=16% Similarity=0.020 Sum_probs=59.1
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEE
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQ 197 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~ 197 (406)
...+|++. .|+..+......++...+...++..+++++|.+|++|+++..-.. . ...+......++.+.+...
T Consensus 129 ~g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~-~----~~~~~~~~~~~l~~~~~~~ 201 (249)
T 4f3p_A 129 NGKVIAAK--TGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPN-V----LFFVNNEGKGRVKVAGAPV 201 (249)
T ss_dssp TTSEEEEE--TTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSSSEEEEEHHH-H----HHHHHTTTTTTEEEEEEEE
T ss_pred CCCEEEEe--CCChHHHHHHhcCCCceEEEcCCHHHHHHHHHcCCeeEEEeCcHH-H----HHHHHhCCCCceEEecCCC
Confidence 34688875 666666666667788889999999999999999999999886431 1 1111111123578888877
Q ss_pred EeeeeEeecCCC
Q 015464 198 LVVNHCLLGLPG 209 (406)
Q Consensus 198 l~I~h~L~~~~g 209 (406)
.+...+++..++
T Consensus 202 ~~~~~~~~~~k~ 213 (249)
T 4f3p_A 202 SGDKYGIGFPKG 213 (249)
T ss_dssp EEEEEEEEEETT
T ss_pred CCccEEEEEcCC
Confidence 777777776655
No 29
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=87.31 E-value=4.1 Score=35.24 Aligned_cols=99 Identities=13% Similarity=-0.075 Sum_probs=63.1
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEE
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQ 197 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~ 197 (406)
...+|++. .|+..+......+...+++..++..+++++|.+|++|+++..-.. . ...+......++.+.+...
T Consensus 116 ~g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~-~----~~~~~~~~~~~~~~~~~~~ 188 (234)
T 3h7m_A 116 RGRKVALH--RDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMVP-G----MYIIRENRLTNLVPVARSI 188 (234)
T ss_dssp TTSCEEEE--TTSHHHHHHHTTTCGGGEEEESSHHHHHHHHHTTSSSEEEEEHHH-H----HHHHHHTTCTTEEEEEEEE
T ss_pred CCCEEEEE--eCchHHHHHHhcCCCceEEEeCCHHHHHHHHHcCCceEEEeccHH-H----HHHHHhcCCCceEEecccc
Confidence 34678886 566555555545556788999999999999999999999885321 0 1111111113577777766
Q ss_pred EeeeeEeecCCCCCccCccEEEechHHHHHHHHHHhh
Q 015464 198 LVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (406)
Q Consensus 198 l~I~h~L~~~~g~~l~~I~~VySHpqal~QC~~~L~~ 234 (406)
.+...+++..++ +|+-.....++|.+
T Consensus 189 ~~~~~~~~~~~~-----------~~~l~~~l~~~l~~ 214 (234)
T 3h7m_A 189 AAQRYGYAVRQG-----------DAELLARFSEGLAI 214 (234)
T ss_dssp EEEEEEEEEETT-----------CHHHHHHHHHHHHH
T ss_pred CCCceEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 666666666543 45555555565554
No 30
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=85.98 E-value=2.8 Score=37.51 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=31.4
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEee
Q 015464 307 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESR 342 (406)
Q Consensus 307 ~ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESR 342 (406)
.++.|.+..+|+||-++++-+.|+.+|+|+..+...
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~ 127 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETE 127 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceee
Confidence 355666777899999999999999999999988776
No 31
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=85.86 E-value=2.2 Score=37.70 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=41.7
Q ss_pred ccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEe
Q 015464 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 169 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVP 169 (406)
..+|++. .|+..+......++...++.+++..+++++|.+|++|+++..
T Consensus 115 g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~ 163 (245)
T 3k4u_A 115 ELTLVTK--FGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFD 163 (245)
T ss_dssp SCEEEEE--TTSHHHHHHHHHCSSSEEEEESSHHHHHHHHHSSSSEEEEEE
T ss_pred CcEEEEe--CCcHHHHHHHhhCCcCCEEEeCCHHHHHHHHHcCCCcEEEEc
Confidence 5678886 677667666667888899999999999999999999998886
No 32
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=85.38 E-value=3.4 Score=36.24 Aligned_cols=102 Identities=7% Similarity=0.070 Sum_probs=61.0
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhc---cCCeEEEE
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---RHRLHIVG 194 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~---~~~l~I~g 194 (406)
...+|++. .|+.........++...++...+..+++++|.+|++|+.+..-. +....+.. ...+. ..++.+.+
T Consensus 109 ~g~~i~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~-~~~~~~~~-~~~~~~~l~~~l~~~~ 184 (237)
T 3kzg_A 109 HGKKIGVR--KGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDYE-AAKYWMAS-EPYAYKLIGKKYKLIG 184 (237)
T ss_dssp TTCEEEEE--TTSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTTSSSEEEEEHH-HHHHHHTT-SSTTHHHHCCSEEEEE
T ss_pred CCCEEEEe--cCCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcCCCCEEEeCcH-HHHHHHHh-CCccccccCCceEEec
Confidence 34688886 45543333444677788999999999999999999999888632 11111111 00000 22677777
Q ss_pred EEE-EeeeeEeecCCCCCccCccEEEechHHHHHHHHHHhh
Q 015464 195 EVQ-LVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (406)
Q Consensus 195 E~~-l~I~h~L~~~~g~~l~~I~~VySHpqal~QC~~~L~~ 234 (406)
... .+...+++.+++ +|+-..+..++|.+
T Consensus 185 ~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 214 (237)
T 3kzg_A 185 KKISIGEGYSIMANPD-----------QFVLIKKINKILLE 214 (237)
T ss_dssp EEEECTTCBCCEECGG-----------GHHHHHHHHHHHHH
T ss_pred CccccCccEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 643 334444444432 46666666666665
No 33
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=84.58 E-value=5.1 Score=38.49 Aligned_cols=67 Identities=6% Similarity=0.104 Sum_probs=47.9
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecC-----CCcHHHHH
Q 015464 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEAS-----MADPRAQF 382 (406)
Q Consensus 308 ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~-----~~~~~~~~ 382 (406)
+..|.+..+|+||-..++-+.++.+|+|+..+...--... +.|++-++++.. .+...+++
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~~~~L~~ 74 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLS---------------ARFFVRCVFHATDDADALRVDALRR 74 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTT---------------TEEEEEEEEEECC----CCHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCC---------------CceEEEEEEEccCcccCCCHHHHHH
Confidence 4567788899999999999999999999999998832211 234444566554 23456777
Q ss_pred HHHHHHH
Q 015464 383 ALGHLQE 389 (406)
Q Consensus 383 al~~L~~ 389 (406)
.++.+.+
T Consensus 75 ~f~~la~ 81 (292)
T 3lou_A 75 EFEPIAE 81 (292)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 34
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=84.46 E-value=6.3 Score=35.99 Aligned_cols=94 Identities=12% Similarity=-0.019 Sum_probs=61.8
Q ss_pred ccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccc-hhcc-CCeEEEEEE
Q 015464 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYD-LLLR-HRLHIVGEV 196 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~D-lL~~-~~l~I~gE~ 196 (406)
..+|++. .|+..+......+++..++...+..+++++|.+|++|+++..-. ++. .+.+ .++.+.+..
T Consensus 153 g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~---------~~~~~~~~~~~l~~~~~~ 221 (292)
T 1xt8_A 153 DKTLLLN--KGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNT---------LLFAWVKDHPDFKMGIKE 221 (292)
T ss_dssp TSEEEEE--TTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHCTTEEEEEEE
T ss_pred CCEEEEe--CCCcHHHHHHHhCCCceEEEcCCHHHHHHHHHcCCccEEEecHH---------HHHHHHHhCCCeEEcccc
Confidence 4688885 67766666666777788899999999999999999999887522 111 1111 237777655
Q ss_pred EEeeee-EeecCCCCCccCccEEEechHHHHHHHHHHhh
Q 015464 197 QLVVNH-CLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (406)
Q Consensus 197 ~l~I~h-~L~~~~g~~l~~I~~VySHpqal~QC~~~L~~ 234 (406)
.-+..+ +++..++ +|+-.....++|.+
T Consensus 222 ~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 249 (292)
T 1xt8_A 222 LGNKDVIAPAVKKG-----------DKELKEFIDNLIIK 249 (292)
T ss_dssp EEEEEEECCEEETT-----------CHHHHHHHHHHHHH
T ss_pred cccCceeEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 445555 5554433 45555666666655
No 35
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=82.63 E-value=7.4 Score=37.57 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=48.4
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecC---CCcHHHHHH
Q 015464 307 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEAS---MADPRAQFA 383 (406)
Q Consensus 307 ~ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~---~~~~~~~~a 383 (406)
.+..|.+..+|+||-..++-+.++.+|+|+..+...-.+.. +.|+.-++++.. .+...+++.
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~---------------g~FfMr~~~~~~~~~~~~~~L~~~ 85 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLS---------------GWFFMRHEIRADTLPFDLDGFREA 85 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTT---------------TEEEEEEEEEGGGSSSCHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCC---------------CeEEEEEEEecCCCCCCHHHHHHH
Confidence 45667788899999999999999999999999988743321 233444555542 234677777
Q ss_pred HHHHHH
Q 015464 384 LGHLQE 389 (406)
Q Consensus 384 l~~L~~ 389 (406)
++.+.+
T Consensus 86 l~~la~ 91 (302)
T 3o1l_A 86 FTPIAE 91 (302)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
No 36
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=82.29 E-value=7.6 Score=37.18 Aligned_cols=67 Identities=7% Similarity=0.166 Sum_probs=47.3
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecC---CCcHHHHHHH
Q 015464 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEAS---MADPRAQFAL 384 (406)
Q Consensus 308 ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~---~~~~~~~~al 384 (406)
+..|.+..+|+||-..++-+.++.+|+|+..+.+.-.... +.|++-+.++.. .+...+++.+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~~L~~~f 70 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTES---------------GHFFMRVVFNAAAKVIPLASLRTGF 70 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTT---------------TEEEEEEEEEESSCCCCHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCC---------------CceEEEEEEEcCCCCCCHHHHHHHH
Confidence 4457778899999999999999999999999988743221 234444455432 3346777777
Q ss_pred HHHHH
Q 015464 385 GHLQE 389 (406)
Q Consensus 385 ~~L~~ 389 (406)
+.+.+
T Consensus 71 ~~la~ 75 (288)
T 3obi_A 71 GVIAA 75 (288)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 37
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=82.22 E-value=8.9 Score=38.69 Aligned_cols=70 Identities=19% Similarity=0.329 Sum_probs=50.2
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHH
Q 015464 307 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGH 386 (406)
Q Consensus 307 ~ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~ 386 (406)
....|.+...|.||.|.++-++|+++|||+....++-... ..| -.+|+++- ++.-+.++++
T Consensus 342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~----------------~~y-~~~d~~~~--~~~~~~~~~~ 402 (416)
T 3k5p_A 342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGE----------------VGY-LVMEADGV--GEASDAVLQE 402 (416)
T ss_dssp SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSS----------------CEE-EEEEECCC--HHHHHHHHHH
T ss_pred CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCc----------------eEE-EEEEecCC--CCCcHHHHHH
Confidence 3567888889999999999999999999999888775322 334 35598721 1344567778
Q ss_pred HHHcCCceE
Q 015464 387 LQEFATFLR 395 (406)
Q Consensus 387 L~~~~~~vr 395 (406)
|+..-.-+|
T Consensus 403 l~~~~~~~~ 411 (416)
T 3k5p_A 403 IREIPGTIR 411 (416)
T ss_dssp HHTSTTEEE
T ss_pred HHhCCCEEE
Confidence 876554443
No 38
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=81.58 E-value=3.1 Score=37.15 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=41.8
Q ss_pred ccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEe
Q 015464 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 169 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVP 169 (406)
..+|++. .|+..+......++..+++.+++..+++++|.+|++|+.+..
T Consensus 123 g~~i~v~--~g~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d 171 (243)
T 4h5g_A 123 SANIAAQ--KGTVPESMVKEQLPKAQLTSLTNMGEAVNELQAGKIDAVHMD 171 (243)
T ss_dssp TSEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHHTSCSEEEEE
T ss_pred CCEEEec--CCcHHHHHHHHhcccceeEEeCCHHHHHHHHHcCCccEEEec
Confidence 4578775 677777777778898899999999999999999999998774
No 39
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=81.09 E-value=3.9 Score=36.12 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=29.3
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeee
Q 015464 309 TSIVFTLEEGPGMLFKALAVFALRDINLTKIESRP 343 (406)
Q Consensus 309 tsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP 343 (406)
.-|.+..+|+||-+.++-+.|+.+|+|+..+.-.-
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~ 41 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM 41 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee
Confidence 44666779999999999999999999998765544
No 40
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=80.01 E-value=5 Score=40.22 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=46.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHH
Q 015464 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHL 387 (406)
Q Consensus 308 ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L 387 (406)
...|++...|+||.+.++-+.|+++|||+......- ++ ..-+..+|++.. ++.-++++++|
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r-~g----------------~~A~~vidvD~~--~~~~~~~l~~l 391 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT-SA----------------QMGYVVIDIEAD--EDVAEKALQAM 391 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE-CS----------------SEEEEEEEEECC--HHHHHHHHHHH
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC-CC----------------CEEEEEEEcCCC--CCCCHHHHHHH
Confidence 345888888999999999999999999998766544 32 233556698874 11335677888
Q ss_pred HHc
Q 015464 388 QEF 390 (406)
Q Consensus 388 ~~~ 390 (406)
++.
T Consensus 392 ~~i 394 (404)
T 1sc6_A 392 KAI 394 (404)
T ss_dssp HTS
T ss_pred hcC
Confidence 763
No 41
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=79.71 E-value=6.6 Score=37.58 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=46.5
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecC--CCcHHHHHHHH
Q 015464 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEAS--MADPRAQFALG 385 (406)
Q Consensus 308 ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~--~~~~~~~~al~ 385 (406)
+..|.+..+|+||-..++-+.|+.+|+|+..+.+.--... +.|+.-++++.. .+...+++.++
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~L~~~f~ 72 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQS---------------GRFFIRVEFRQPDDFDEAGFRAGLA 72 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTT---------------TEEEEEEEEECCSSCCHHHHHHHHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCC---------------CeeEEEEEEecCCCCCHHHHHHHHH
Confidence 3457778899999999999999999999999988832221 233333455432 23456777777
Q ss_pred HHHH
Q 015464 386 HLQE 389 (406)
Q Consensus 386 ~L~~ 389 (406)
.+.+
T Consensus 73 ~la~ 76 (286)
T 3n0v_A 73 ERSE 76 (286)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 7654
No 42
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=79.62 E-value=19 Score=33.57 Aligned_cols=130 Identities=16% Similarity=0.064 Sum_probs=73.5
Q ss_pred CccEEEEEcCCCcHHHHHHHHHC-----C-CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeE
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAY-----P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLH 191 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f-----~-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~ 191 (406)
...+|++......+.-.-...+| + +++++...++.++++++.+|++|++++..... .+......++.
T Consensus 29 ~~lrig~~~~~~p~~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~-------~~~~~~g~~~~ 101 (324)
T 3ksx_A 29 AQLRIGYQKAVSSLVLAKQHRLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGDIPP-------LFAQAAGADLL 101 (324)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHCTTSEEEEEEESSHHHHHHHHHTTSCSEEEEESHHH-------HHHHHTTCCEE
T ss_pred CeEEEEecCCchhHHHHHhhCHHHHhcCCCceEEEECCCHHHHHHHHHCCCCCEEeecCHHH-------HHHHhcCCCEE
Confidence 45789998543222211122233 3 46788888999999999999999998643211 11111234667
Q ss_pred EEEEEEE-eeeeEeecCCCC---CccCc--cEEEechHH--HHHHHHHHhhcCC-----eEEeccCHHHHHHHHHhc
Q 015464 192 IVGEVQL-VVNHCLLGLPGV---LKEEL--KRVFSHPQA--LAQCEMTLSNLGI-----VRISADDTAGAAQMVASI 255 (406)
Q Consensus 192 I~gE~~l-~I~h~L~~~~g~---~l~~I--~~VySHpqa--l~QC~~~L~~~~~-----~~i~~~sTA~Aa~~v~~~ 255 (406)
+++-... +-...++++++. +++|+ ++|..-+-. ......+|++.++ +.+.. +.+++...+..+
T Consensus 102 ~v~~~~~~~~~~~lvv~~~s~I~s~~DLkGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G 177 (324)
T 3ksx_A 102 YVGWVPPTPKAETILVPSKSALRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAG 177 (324)
T ss_dssp EEEEECCCGGGEEEEEETTCSCCSGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTT
T ss_pred EEEEecCCCCceEEEEeCCCCCCCHHHhCCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcC
Confidence 7665432 223567766653 34555 356554322 2234557766543 44544 667777777664
No 43
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=79.59 E-value=8.3 Score=33.62 Aligned_cols=48 Identities=25% Similarity=0.151 Sum_probs=39.3
Q ss_pred ccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEe
Q 015464 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 169 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVP 169 (406)
..+|++. .|+..+..... ++..++..+++..+++++|.+|++|+++..
T Consensus 118 g~~i~v~--~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~ 165 (242)
T 3del_B 118 YRSVAVQ--TGTYQEAYLQS-LSEVHIRSFDSTLEVLMEVMHGKSPVAVLE 165 (242)
T ss_dssp SSCEEEE--TTSHHHHHHHH-STTCCEEEESSHHHHHHHHHTTSSSEEEEC
T ss_pred CCEEEEE--cCcHHHHHHHh-CCCceEEEECCHHHHHHHHHcCCCCEEEec
Confidence 4578875 57766665554 677889999999999999999999999876
No 44
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=79.10 E-value=10 Score=36.30 Aligned_cols=67 Identities=12% Similarity=0.237 Sum_probs=45.8
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCC-CcHHHHHHHHH
Q 015464 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASM-ADPRAQFALGH 386 (406)
Q Consensus 308 ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~-~~~~~~~al~~ 386 (406)
+..|.+..+|+||-..++-+.++.+|+|+..+........ +.|+.-++++... +...+++.++.
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~L~~~f~~ 71 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDS---------------SKFFMRVSVEIPVAGVNDFNSAFGK 71 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTT---------------TEEEEEEEEECCC---CHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCC---------------CeEEEEEEEEcCCCCHHHHHHHHHH
Confidence 4567788899999999999999999999999988742221 2333344554421 22367777776
Q ss_pred HHH
Q 015464 387 LQE 389 (406)
Q Consensus 387 L~~ 389 (406)
+.+
T Consensus 72 la~ 74 (287)
T 3nrb_A 72 VVE 74 (287)
T ss_dssp HHG
T ss_pred HHH
Confidence 654
No 45
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=78.00 E-value=5 Score=35.59 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=41.4
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEee
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPI 170 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 170 (406)
...+|++. .|+..+......++...+...++.++++++|.+|++|+++..-
T Consensus 149 ~g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~ 199 (269)
T 4i62_A 149 AQKKVGAQ--KGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFEE 199 (269)
T ss_dssp C-CEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSSSEEEEEH
T ss_pred CCCeEEEe--cCchHHHHHHHhCCCCcEEecCCHHHHHHHHHcCCCCEEEeCh
Confidence 34688875 6666666666678888899999999999999999999998863
No 46
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=77.66 E-value=8.8 Score=39.66 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=49.9
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHH
Q 015464 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHL 387 (406)
Q Consensus 308 ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L 387 (406)
-..|++..+|+||.+.++.+.+..+|||+..+.---.... .+-...++++....+. +.+.|.++
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~---------------~~a~~~i~vd~~~~~~-~l~~l~~~ 517 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEG---------------PGATILLRLDQDVPDD-VRTAIAAA 517 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSS---------------SCEEEEEEESSCCCHH-HHHHHHHH
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCC---------------CEEEEEEEECCCCCHH-HHHHHhcC
Confidence 3567888899999999999999999999998864332221 3567788888766533 33344444
Q ss_pred HHcCCceEEE
Q 015464 388 QEFATFLRVL 397 (406)
Q Consensus 388 ~~~~~~vrvL 397 (406)
... .+++++
T Consensus 518 ~~i-~~v~~v 526 (529)
T 1ygy_A 518 VDA-YKLEVV 526 (529)
T ss_dssp HTE-EEEEEE
T ss_pred CCc-cEEEEE
Confidence 433 345443
No 47
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=77.25 E-value=6.1 Score=34.04 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=40.8
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEee
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPI 170 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 170 (406)
...+|++. .|+..+......++...+....+..+++++|.+|++|+++..-
T Consensus 111 ~g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~ 161 (229)
T 2y7i_A 111 KGKKVGLE--NGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKNNRLEGVFGDV 161 (229)
T ss_dssp TTCEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSCSEEEEEH
T ss_pred CCCEEEEe--cCCcHHHHHHHhCCCCeEEecCCHHHHHHHHHcCCcCEEEech
Confidence 34678885 5666666566567778889999999999999999999998863
No 48
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=76.89 E-value=20 Score=32.19 Aligned_cols=114 Identities=17% Similarity=0.058 Sum_probs=66.6
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC----CccCcc-
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~----~l~~I~- 216 (406)
.+++++..+|.++++++.+|++|+.. ++..+.+-. ..+.-.. -+......++++++. ++++++
T Consensus 72 ~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~t~~r~-----~~~~fs~------p~~~~~~~l~~~~~~~~i~~~~dL~g 139 (267)
T 3mpk_A 72 DFEIIGVDTVEELIAKLRSGEADMAG-ALFVNSARE-----SFLSFSR------PYVRNGMVIVTRQDPDAPVDADHLDG 139 (267)
T ss_dssp EEEEEEESSHHHHHHHHHHTSCSEEE-EEECCGGGT-----TTEEECS------CSEEECEEEEEESSTTSCSSGGGCTT
T ss_pred eEEEEecCCHHHHHHHHHCCCccEEe-cccCChhhh-----cceEech------hhccCceEEEEECCCCCCCCHHHHCC
Confidence 56778888999999999999999954 444332211 0000011 112223455554441 233332
Q ss_pred -EEEechHHHHHHHHHHhh--cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 -RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 -~VySHpqal~QC~~~L~~--~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|....- -. -..+|.+ ++...+.+.|..++.+.+..+. -.|+|++...+..
T Consensus 140 ~~i~v~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~l~~L~~Gr--vDa~i~~~~~~~~ 193 (267)
T 3mpk_A 140 RTVALVRN-SA-AIPLLQRRYPQAKVVTADNPSEAMLMVANGQ--ADAVVQTQISASY 193 (267)
T ss_dssp CEEEEETT-CT-HHHHHHHHCTTSEEEEESSHHHHHHHHHHTS--CSEEEEEHHHHHH
T ss_pred CEEEEeCC-ch-hHHHHHHhCCCcEEEEeCCHHHHHHHHHcCC--CCEEEecHHHHHH
Confidence 3433321 11 2345554 4788899999999999998863 4578887766543
No 49
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=76.51 E-value=29 Score=29.54 Aligned_cols=117 Identities=13% Similarity=-0.009 Sum_probs=67.8
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC-----CccCcc
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV-----LKEELK 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~-----~l~~I~ 216 (406)
.++++...+|.++++++.+|++|+++-++..+.+-.-...++ ....+ ......++++++. ++++++
T Consensus 45 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~~--~s~p~-------~~~~~~~~~~~~~~~~i~~~~dL~ 115 (233)
T 1ii5_A 45 NSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAIEGIT--FTQPY-------FSSGIGLLIPGTATPLFRSVGDLK 115 (233)
T ss_dssp CEEEEECSCHHHHHHHHHTTSCSEEEEEEECCHHHHTSTTEE--ECCCC-------EEEEEEEEEEGGGTTTCSSGGGGT
T ss_pred cEEEEEeCCHHHHHHHHHCCCcCEEEeeeecCccccccceeE--Eccce-------eecCeEEEEECCCCCCCCCHHHhC
Confidence 577888889999999999999999876544221110000110 01111 1223344444321 234442
Q ss_pred --EEEechHHHHHHHHHHhhcCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 --RVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 --~VySHpqal~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|....- .. ...+|.+.+...+.+.|..++.+++..+. -.|+|++...+..
T Consensus 116 g~~v~~~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~ 168 (233)
T 1ii5_A 116 NKEVAVVRD-TT-AVDWANFYQADVRETNNLTAAITLLQKKQ--VEAVMFDRPALIY 168 (233)
T ss_dssp TCEEEEETT-SH-HHHHHHHTTCEEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred CCeEEEECC-cc-HHHHHHHcCCCeEEcCCHHHHHHHHHcCC--ccEEEeCHHHHHH
Confidence 4433221 11 13466666788888999999999998753 4577877766554
No 50
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=76.28 E-value=3.5 Score=36.06 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=41.1
Q ss_pred ccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEe
Q 015464 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 169 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVP 169 (406)
..+|++. .|+..+......++...+..+++..+++++|.+|++|+.+..
T Consensus 125 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 173 (239)
T 3kbr_A 125 GVTAIVN--PGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTD 173 (239)
T ss_dssp TCEEEEC--TTSHHHHHHHHHCSSSEEEECCCTTTHHHHHHTTSCSEEEEE
T ss_pred CcEEEEc--CCCcHHHHHHHhCCCCceEEeCCHHHHHHHHHcCCcCEEEEc
Confidence 4578874 677667666777888899999999999999999999999875
No 51
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=74.89 E-value=18 Score=31.51 Aligned_cols=91 Identities=13% Similarity=0.037 Sum_probs=58.0
Q ss_pred EEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhcc--CCeEEEEEE-E
Q 015464 121 RVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLR--HRLHIVGEV-Q 197 (406)
Q Consensus 121 ~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~--~~l~I~gE~-~ 197 (406)
+|++. .|+..+.....+ ..+++.+++.++++++|.+|++|+.+..-.. . . .++.+ .++.+.++. .
T Consensus 108 ~igv~--~g~~~~~~l~~~--~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~-~----~---~~~~~~~~~~~~~~~~~~ 175 (232)
T 3i6v_A 108 IVAAQ--TATIQAGYIAES--GATLVEFATPEETIAAVRNGEADAVFADRDY-L----V---PIVAESGGELMFVGDDVP 175 (232)
T ss_dssp EEEEE--TTSHHHHHHHHS--SSEEEEESSHHHHHHHHHTTSSSEEEEEHHH-H----H---HHHHHTTTSSEEEEEEEE
T ss_pred CEEEe--cCchHHHHHHhc--CCeEEEeCCHHHHHHHHHcCCcCEEEEChHH-H----H---HHHHhCCCCeEEecCCCC
Confidence 88886 676666555544 5788999999999999999999998875321 1 1 11122 457787753 3
Q ss_pred EeeeeEeecCCCCCccCccEEEechHHHHHHHHHHhh
Q 015464 198 LVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (406)
Q Consensus 198 l~I~h~L~~~~g~~l~~I~~VySHpqal~QC~~~L~~ 234 (406)
.+...+++.+++ +|+-..+..++|.+
T Consensus 176 ~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 201 (232)
T 3i6v_A 176 LGGGVGMGLRES-----------DGELRGKFDAAITS 201 (232)
T ss_dssp CSSCEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 334455555543 34555555555554
No 52
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=74.83 E-value=14 Score=32.59 Aligned_cols=48 Identities=25% Similarity=0.128 Sum_probs=38.4
Q ss_pred ccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEe
Q 015464 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 169 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVP 169 (406)
..+|++. .|+..+..... ++..+++..++.++++++|.+|++|+++..
T Consensus 139 g~~i~~~--~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 186 (268)
T 3qax_A 139 YSSVAVQ--TGTYQEHYLLS-QPGICVRSFDSTLEVIMEVRYGKSPVAVLE 186 (268)
T ss_dssp SSCEEEE--TTSHHHHHHHT-STTCCEEEESCHHHHHHHHHTTSSSEEEEC
T ss_pred CCEEEEe--cCcHHHHHHHh-CCCceEEecCCHHHHHHHHHcCCCCEEEec
Confidence 4578875 66666655553 667788899999999999999999998875
No 53
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=73.55 E-value=6 Score=36.37 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=41.2
Q ss_pred ccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEee
Q 015464 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPI 170 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 170 (406)
..+|++. .|+..+.....++++.+++...+..+++++|.+|++|+++++-
T Consensus 164 gk~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~ 213 (291)
T 2yjp_A 164 DQTLLVN--KGTTADAFFTKSHPEVKLLKFDQNTETFDALKDGRGVALAHDN 213 (291)
T ss_dssp TSEEEEE--TTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEH
T ss_pred CCEEEEe--cCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCccEEEecH
Confidence 4678874 6776666666677778889999999999999999999998863
No 54
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=73.20 E-value=12 Score=33.11 Aligned_cols=35 Identities=6% Similarity=-0.057 Sum_probs=29.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeee
Q 015464 309 TSIVFTLEEGPGMLFKALAVFALRDINLTKIESRP 343 (406)
Q Consensus 309 tsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP 343 (406)
.-|.+..+|+||-..++-+.++.+|+|+....---
T Consensus 6 ~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~ 40 (195)
T 2nyi_A 6 FVVSVAGSDRVGIVHDFSWALKNISANVESSRMAC 40 (195)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEE
Confidence 34566779999999999999999999999766554
No 55
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=70.14 E-value=57 Score=30.57 Aligned_cols=138 Identities=14% Similarity=0.088 Sum_probs=75.7
Q ss_pred CccEEEEEcCCCcHHHHHHHH---HCC----CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCe
Q 015464 118 TKVRVAYQGLPGAYSEAAARK---AYP----KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRL 190 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~---~f~----~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l 190 (406)
...+|++....+......|.. +|. ++++....++.++++++.+|++|+++......+.. .-...++
T Consensus 52 ~~l~vg~~~~~~~~p~~~a~~l~g~~~~~G~~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~-------~~~g~~~ 124 (341)
T 3un6_A 52 QVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKS-------KQKGSNI 124 (341)
T ss_dssp CEEEEEECSSGGGHHHHHHHHHHHTSSSCSSEEEEEECSSHHHHHHHHHTTSSSEEEEEHHHHHHH-------HHTTCCC
T ss_pred ceEEEEEEeccccHHHHHHHHhhChHHHcCCcEEEEEcCCHHHHHHHHHcCCCCEEecchHHHHHH-------HHCCCCe
Confidence 356777764333222333333 553 46788999999999999999999998765422111 0012345
Q ss_pred EEEEEEEEeeeeEeecCCCC---CccCc---cEEEechH---HHHHHHHHHhhcCC-----eEEeccCHHHHHHHHHhcC
Q 015464 191 HIVGEVQLVVNHCLLGLPGV---LKEEL---KRVFSHPQ---ALAQCEMTLSNLGI-----VRISADDTAGAAQMVASIG 256 (406)
Q Consensus 191 ~I~gE~~l~I~h~L~~~~g~---~l~~I---~~VySHpq---al~QC~~~L~~~~~-----~~i~~~sTA~Aa~~v~~~~ 256 (406)
.+++-.. +-...++++++. +++|+ ++|..-.. .....+.+|++.++ +.+.. +.+++...+..+.
T Consensus 125 ~~v~~~~-~~~~~ivv~~~s~I~s~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G~ 202 (341)
T 3un6_A 125 KAVALGH-HEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEHR 202 (341)
T ss_dssp EEEEESC-EECEEEEESTTCCGGGCCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTTS
T ss_pred EEEeecC-CCceEEEEcCCCCCCCHHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcCC
Confidence 5555422 234566776643 34566 46654331 11223457776543 44455 4556666666542
Q ss_pred CCCeEEEcCH
Q 015464 257 ERDTGAVASA 266 (406)
Q Consensus 257 ~~~~AAIas~ 266 (406)
-+ |++...
T Consensus 203 -vD-a~~~~~ 210 (341)
T 3un6_A 203 -IT-GYSVAE 210 (341)
T ss_dssp -CS-EEEEET
T ss_pred -CC-EEEecC
Confidence 33 555443
No 56
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=69.54 E-value=11 Score=32.77 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=39.4
Q ss_pred ccEEEEEcCCCcHHHHHHHHHC--CCCceeccCCHHHHHHHHHcCCccEEEEee
Q 015464 119 KVRVAYQGLPGAYSEAAARKAY--PKCETVPCDQFEAAFKAVELWLVDKAVLPI 170 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f--~~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 170 (406)
..+|++. .|+..+.....++ ...++..+++..+++++|.+|++|+++..-
T Consensus 111 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~ 162 (239)
T 1lst_A 111 GKHVGVL--QGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDE 162 (239)
T ss_dssp TCEEEEE--TTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEEH
T ss_pred CCEEEEE--cCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeCc
Confidence 4578875 6776665556566 357888999999999999999999998863
No 57
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=69.18 E-value=14 Score=36.24 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=30.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeC
Q 015464 309 TSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQ 344 (406)
Q Consensus 309 tsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~ 344 (406)
..|.++-+|+||-...+-+.++.+|+|+..+...-.
T Consensus 13 ~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~ 48 (415)
T 3p96_A 13 VLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI 48 (415)
T ss_dssp EEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE
Confidence 345566799999999999999999999999988753
No 58
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=68.85 E-value=5.9 Score=35.52 Aligned_cols=81 Identities=9% Similarity=0.025 Sum_probs=53.8
Q ss_pred ccEEEEEcCCCcHHHHHHHHHCCC------CceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhcc--CCe
Q 015464 119 KVRVAYQGLPGAYSEAAARKAYPK------CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLR--HRL 190 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f~~------~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~--~~l 190 (406)
..+|++. .|+..+......++. .++..+++.++++++|.+|++|+.+..-.. . ..++.+ .++
T Consensus 137 g~~v~v~--~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~-~-------~~~~~~~~~~~ 206 (259)
T 4dz1_A 137 KYSIGYP--RGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPV-Y-------FTFKNKKKMPI 206 (259)
T ss_dssp GSCEEEE--TTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHH-H-------HHHHHTSCCCE
T ss_pred CCEEEEe--CCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHH-H-------HHHhccCCCce
Confidence 4678886 566556656656654 678899999999999999999999886331 0 011122 345
Q ss_pred EEEEEEEEeeeeEeecCCC
Q 015464 191 HIVGEVQLVVNHCLLGLPG 209 (406)
Q Consensus 191 ~I~gE~~l~I~h~L~~~~g 209 (406)
.+.....-+...+++.+++
T Consensus 207 ~~~~~~~~~~~~~~~~~k~ 225 (259)
T 4dz1_A 207 ESRYVFKNVDQLGIAFKKG 225 (259)
T ss_dssp EEEEEEEEEEEEEEEEETT
T ss_pred EeecccCCCceEEEEEeCC
Confidence 6665555555666666654
No 59
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=68.36 E-value=8.5 Score=39.13 Aligned_cols=65 Identities=11% Similarity=0.250 Sum_probs=43.1
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHHHHc
Q 015464 311 IVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEF 390 (406)
Q Consensus 311 i~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L~~~ 390 (406)
+-|.+.|+||.|.++-++|.++||++..+-.++..... ...+ ..++- -...+..+++++++|+..
T Consensus 362 ~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~------------~~~~-~v~~t--h~~~e~~~~~~~~~~~~~ 426 (444)
T 3mtj_A 362 LRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGE------------EQVD-IILLT--HVTLEKNVNAAIAKIEAL 426 (444)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------------------CEE-EEEEE--CSEEHHHHHHHHHHHTTS
T ss_pred EEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCC------------CCce-EEEEe--ccCCHHHHHHHHHHHhcC
Confidence 44566899999999999999999999988777643110 0012 22222 223567899999999864
No 60
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=67.75 E-value=18 Score=31.45 Aligned_cols=114 Identities=15% Similarity=0.060 Sum_probs=69.2
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEE--eeeeEeecCCCC---CccCcc
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQL--VVNHCLLGLPGV---LKEELK 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l--~I~h~L~~~~g~---~l~~I~ 216 (406)
++++++. +|.+++.++.+|++|+++-.+.. +-+ ....+.. .-++ .....++++++. ++++++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--------~~~--r~~~~~~--~p~~~~~~~~~~~~~~~~~i~~~~dL~ 117 (242)
T 3del_B 51 TLDVREF-SFDALILNLKQHRIDAVITGMSI--------TPS--RLKEILM--IPYYGEEIKHLVLVFKGENKHPLPLTQ 117 (242)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSSSEECSSBBC--------CHH--HHTTEEE--EEEEEEEESEEEEEEESCCSCCCCGGG
T ss_pred ceEEEEc-CHHHHHHHHhCCCcCEEEecCcC--------CHH--HHhcccc--eeeeecCCceEEEEeCCCCCCCHHHhC
Confidence 5677887 89999999999999987532221 111 1112222 3333 455666665542 234442
Q ss_pred --EEEechHHHHHHHHHHhh-cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHc
Q 015464 217 --RVFSHPQALAQCEMTLSN-LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 272 (406)
Q Consensus 217 --~VySHpqal~QC~~~L~~-~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~y 272 (406)
+|.... .-.. ..++.+ ++..++.+.|..++.+.+..+. -.|+|++...+..+
T Consensus 118 g~~i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~L~~g~--vDa~~~~~~~~~~~ 172 (242)
T 3del_B 118 YRSVAVQT-GTYQ-EAYLQSLSEVHIRSFDSTLEVLMEVMHGK--SPVAVLEPSIAQVV 172 (242)
T ss_dssp SSCEEEET-TSHH-HHHHHHSTTCCEEEESSHHHHHHHHHTTS--SSEEEECHHHHHHH
T ss_pred CCEEEEEc-CcHH-HHHHHhCCCceEEEECCHHHHHHHHHcCC--CCEEEecHHHHHHH
Confidence 343322 2222 234444 5788888999999999998763 45888887777654
No 61
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=67.64 E-value=9 Score=34.47 Aligned_cols=50 Identities=14% Similarity=0.004 Sum_probs=39.6
Q ss_pred ccEEEEEcCCCcHHHHHHHHHCC-CCceeccCCHHHHHHHHHcCCccEEEEee
Q 015464 119 KVRVAYQGLPGAYSEAAARKAYP-KCETVPCDQFEAAFKAVELWLVDKAVLPI 170 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f~-~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 170 (406)
..+|++. .|+..+......++ ..++..+.+..+++++|.+|++|+++.+-
T Consensus 147 g~~i~~~--~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~vDa~~~~~ 197 (272)
T 2pvu_A 147 GKTIGVQ--NATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVITDN 197 (272)
T ss_dssp TSCEEEE--TTSHHHHHHHHHHCSSTTEEEESSHHHHHHHHHTTSCSEEEEEH
T ss_pred CCeEEEE--cCchHHHHHHHhcCCCCeEEEcCCHHHHHHHHHcCCccEEEeCH
Confidence 4578885 56666665565666 66788889999999999999999998863
No 62
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=65.82 E-value=10 Score=32.40 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=38.9
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCCC-CceeccCCHHHHHHHHHcCCccEEEEe
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYPK-CETVPCDQFEAAFKAVELWLVDKAVLP 169 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~~-~~~~~~~s~~~v~~aV~~g~~d~gvVP 169 (406)
...+|++. .|+..+......++. ..+....+..+++++|.+|++|+++..
T Consensus 108 ~g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 158 (227)
T 3tql_A 108 KGKIIGVQ--GGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTSGRVDAVVGD 158 (227)
T ss_dssp TTCEEEEE--TTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTTTSSSEEESC
T ss_pred CCCEEEEE--ecccHHHHHHHhccccceEEEcCCHHHHHHHHHcCCcCEEEeC
Confidence 45688886 455555545555555 789999999999999999999998775
No 63
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=65.75 E-value=13 Score=35.26 Aligned_cols=43 Identities=19% Similarity=0.087 Sum_probs=35.2
Q ss_pred CCcHHHHHHHHHC---C-CCceeccCCHHHHHHHHHcCCccEEEEee
Q 015464 128 PGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPI 170 (406)
Q Consensus 128 ~Gs~s~~AA~~~f---~-~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 170 (406)
.|+.+|.++..++ | +...+++.+..+++.+|.+|++|+++...
T Consensus 138 ~Gs~~hl~~~~l~~~~G~~~~~Vpy~g~~~a~~al~~G~vD~~~~~~ 184 (301)
T 2qpq_A 138 NGTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTA 184 (301)
T ss_dssp TTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSSCEEEEH
T ss_pred CCcHHHHHHHHHHHHhCCCeEEeccCChHHHHHHHHCCCccEEEEcH
Confidence 4888898876443 3 45678999999999999999999998864
No 64
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=65.58 E-value=11 Score=32.93 Aligned_cols=116 Identities=13% Similarity=0.074 Sum_probs=66.8
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC---CccCc--c
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEEL--K 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~---~l~~I--~ 216 (406)
.+++++. +|.++++++.+|++|+++.++..+.+..-. ++ .... +......++++++. +++++ +
T Consensus 44 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~--~~--fs~p-------~~~~~~~~~~~~~~~~~~~~dL~g~ 111 (237)
T 3kzg_A 44 TCTFEAY-IFDDLFPALKNREVDLVIASMIITDERKKH--FI--FSLP-------YMESNSQYITTVDSKISTFDDLHGK 111 (237)
T ss_dssp EEEEEEE-CGGGHHHHHHTTSSSEECSSCBCCTTGGGT--CE--ECCC-------SBCCEEEEEEETTCSCCSGGGGTTC
T ss_pred ceEEEEc-CHHHHHHHHhCCCCCEEEEccccChhHhcc--ce--eeee-------eeecceEEEEECCCCCCCHHHhCCC
Confidence 4667776 799999999999999876544433221100 00 0001 11223445555442 23343 2
Q ss_pred EEEechHHHHHHHHHHhh-cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHc
Q 015464 217 RVFSHPQALAQCEMTLSN-LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 272 (406)
Q Consensus 217 ~VySHpqal~QC~~~L~~-~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~y 272 (406)
+|.... .-.....+.+. ++...+.+.|..++.+++..+. -.|++.....+..+
T Consensus 112 ~i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~~ 165 (237)
T 3kzg_A 112 KIGVRK-GTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQ--VDASLMDYEAAKYW 165 (237)
T ss_dssp EEEEET-TSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHHH
T ss_pred EEEEec-CCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcCC--CCEEEeCcHHHHHH
Confidence 443322 22233344444 4678889999999999998753 45777777766543
No 65
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=64.38 E-value=8.3 Score=37.04 Aligned_cols=44 Identities=18% Similarity=0.020 Sum_probs=35.6
Q ss_pred CCcHHHHHHHHHC---C-CCceeccCCHHHHHHHHHcCCccEEEEeee
Q 015464 128 PGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPIE 171 (406)
Q Consensus 128 ~Gs~s~~AA~~~f---~-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIE 171 (406)
.|+.+|.++..++ | +...+++.+..+++.+|..|++|+++....
T Consensus 147 ~Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~aL~~G~VD~~~~~~~ 194 (312)
T 2f5x_A 147 IGAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQTT 194 (312)
T ss_dssp TTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCEEEEEHH
T ss_pred CCcHHHHHHHHHHHHHCCCeEEeccCChHHHHHHHHcCCccEEEechH
Confidence 4888898876443 3 456789999999999999999999998653
No 66
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=62.86 E-value=93 Score=29.12 Aligned_cols=117 Identities=14% Similarity=0.006 Sum_probs=64.1
Q ss_pred CCce--eccC-CHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC---CccCc
Q 015464 142 KCET--VPCD-QFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEEL 215 (406)
Q Consensus 142 ~~~~--~~~~-s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~---~l~~I 215 (406)
++++ .... +..++++++.+|++|+++......+ ...-...++.+++.....-...|+++++. +++|+
T Consensus 45 ~v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~~~~-------~~~~~g~~~~~v~~~~~~~~~~lvv~~~s~i~s~~DL 117 (348)
T 3uif_A 45 KVEWVPAAMASVGPVINEGFASGKIDFGIYGDLPPI-------ILNASKPTVQLVAPWGTTSNSYLVVPKNSTAKSIKDL 117 (348)
T ss_dssp EEEEEEECTTCHHHHHHHHHHTTCCCEEEEESHHHH-------HHHHHSCCEEEEEECCCCCCCEEEEETTCCCCSGGGG
T ss_pred eEEEEecccCCCcHHHHHHHHcCCCCEEecCcHHHH-------HHHhCCCCEEEEEeccCCCceEEEEECCCCCCCHHHc
Confidence 4666 5555 4788999999999999985432111 01112345666655444444566666543 34455
Q ss_pred --cEEEechH--HHHHHHHHHhhcC-----CeEEeccCHHHHHHHHHhcCCCCeEEEcCHHh
Q 015464 216 --KRVFSHPQ--ALAQCEMTLSNLG-----IVRISADDTAGAAQMVASIGERDTGAVASAQA 268 (406)
Q Consensus 216 --~~VySHpq--al~QC~~~L~~~~-----~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~a 268 (406)
++|...+- .......+|++.+ ++.+.. +.+++...+..+. -+ |++.....
T Consensus 118 kGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~-vD-a~~~~~~~ 176 (348)
T 3uif_A 118 KGKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGT-VD-GFFSLFDS 176 (348)
T ss_dssp TTSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTS-SS-EEEESTTH
T ss_pred CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCC-CC-EEEechHH
Confidence 36655322 2233456776655 344443 5666666666642 33 55554443
No 67
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=62.65 E-value=28 Score=30.30 Aligned_cols=112 Identities=8% Similarity=-0.039 Sum_probs=68.1
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC--CccCccEEE
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV--LKEELKRVF 219 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~--~l~~I~~Vy 219 (406)
.++++.. +|.+++.++.+|++|+++-++..+.+ .+..+... .-++.....++.+++. ++.. +|.
T Consensus 45 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~----------r~~~~~fs-~p~~~~~~~~~~~~~~~~dL~g--~ig 110 (232)
T 3i6v_A 45 TCEWVKN-DWDSIIPNLVSGNYDTIIAGMSITDE----------RDEVIDFT-QNYIPPTASSYVATSDGADLSG--IVA 110 (232)
T ss_dssp CEEEEEC-CGGGHHHHHHTTSCSEECSSCBCCHH----------HHTTSEEE-EEEECCCEEEEEESSTTCCTTS--EEE
T ss_pred ceEEEEC-CHHHHHHHHHCCCCCEEEeCCcCCHH----------HHhhcCcc-cccccCCeEEEEECCChHHhCC--CEE
Confidence 5677774 89999999999999987544332211 11122222 2244455566665542 3444 333
Q ss_pred echHHHHHHHHHHhhcCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 220 SHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 220 SHpqal~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
.-. ... -..+|.+.++..+.+.|..++.+++..+. -.|+|+....+..
T Consensus 111 v~~-g~~-~~~~l~~~~~~~~~~~~~~~~~~~L~~Gr--vDa~i~~~~~~~~ 158 (232)
T 3i6v_A 111 AQT-ATI-QAGYIAESGATLVEFATPEETIAAVRNGE--ADAVFADRDYLVP 158 (232)
T ss_dssp EET-TSH-HHHHHHHSSSEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred Eec-Cch-HHHHHHhcCCeEEEeCCHHHHHHHHHcCC--cCEEEEChHHHHH
Confidence 222 111 23456555788899999999999998763 4578887776643
No 68
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=62.32 E-value=27 Score=30.63 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=66.1
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCC--C---CccCcc
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPG--V---LKEELK 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g--~---~l~~I~ 216 (406)
++++.+. +|.++++++.+|++|+++.++..+.+. ...+.. ..-.......++.+++ . +++|++
T Consensus 82 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r----------~~~~~~-s~p~~~~~~~~~~~~~~~~~i~~~~dL~ 149 (269)
T 4i62_A 82 ELELSPM-SFDNVLASVQSGKADLAISGVSKTDER----------SKVFDF-STPYYTAKNKLIVKKSDLATYQSVNDLA 149 (269)
T ss_dssp EEEEEEC-CHHHHHHHHHTTSCSEECSSCBCCHHH----------HTTEEE-CSCCEECCEEEEEEGGGTTTCSSGGGGC
T ss_pred ceEEEEc-CHHHHHHHHhCCCccEEecCCcCCHhH----------hhceec-ccchhhcceEEEEECCccccccCHHHhC
Confidence 5677887 999999999999999976443322110 001111 0111223334444433 1 344442
Q ss_pred --EEEechHHHHHHHHHHhh--cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 --RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 --~VySHpqal~QC~~~L~~--~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|....-.. ...++.+ ++...+.+.|..++.+.+..+. -.|++.....+..
T Consensus 150 g~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~ 204 (269)
T 4i62_A 150 QKKVGAQKGSI--QETMAKDLLQNSSLVSLPKNGNLITDLKSGQ--VDAVIFEEPVAKG 204 (269)
T ss_dssp -CEEEEETTSH--HHHHHHHHCTTSEEEEESCHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred CCeEEEecCch--HHHHHHHhCCCCcEEecCCHHHHHHHHHcCC--CCEEEeChHHHHH
Confidence 444433221 2445555 4678889999999999998753 4577777766544
No 69
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=62.04 E-value=67 Score=26.61 Aligned_cols=144 Identities=15% Similarity=0.063 Sum_probs=71.1
Q ss_pred CccEEEEEcCCCcH--HHHHH--HHHCCCCceec-cCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEE
Q 015464 118 TKVRVAYQGLPGAY--SEAAA--RKAYPKCETVP-CDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHI 192 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~--s~~AA--~~~f~~~~~~~-~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I 192 (406)
+..+|++...-+.+ ..... ++.++++++.. ..+..++.+.+.+|++|+|++.-.....+... ..|.+..+.+
T Consensus 4 g~l~Ig~~~~~~~~~l~~~l~~~~~~~P~i~i~i~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~---~~l~~~~~~~ 80 (219)
T 3jv9_A 4 GAFKLGLIFTVAPYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIVT---EPLYDEPFFV 80 (219)
T ss_dssp CCEEEEEETTTHHHHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEESSCCCTTEEE---EEEEEEEEEE
T ss_pred CcEEEEEcchhhHHHHHHHHHHHHHHCCCcEEEEEeCCcHHHHHHHHcCCCCEEEEcCCCCCCCeeE---EEeeeceEEE
Confidence 45677776443322 11111 22467766543 35677899999999999999975422111110 0011111111
Q ss_pred EEEEEEeeeeEeecCCCCCccCc---cEEEech-H-HHHHHHHHHhh-----c---CCeEEeccCHHHHHHHHHhcCCCC
Q 015464 193 VGEVQLVVNHCLLGLPGVLKEEL---KRVFSHP-Q-ALAQCEMTLSN-----L---GIVRISADDTAGAAQMVASIGERD 259 (406)
Q Consensus 193 ~gE~~l~I~h~L~~~~g~~l~~I---~~VySHp-q-al~QC~~~L~~-----~---~~~~i~~~sTA~Aa~~v~~~~~~~ 259 (406)
..+-.|-|......+++++ .-|...+ . -..+..+++.+ . ......++|...+.++|..+ .
T Consensus 81 ----v~~~~~pl~~~~~~~~~~L~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~g---~ 153 (219)
T 3jv9_A 81 ----IVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASG---L 153 (219)
T ss_dssp ----EEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHHT---S
T ss_pred ----EEeCCCCcccCCCCCHHHhcCCcEEEecCCccHHHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHHHHHcC---C
Confidence 1222233332222334444 3343322 1 22444555533 1 12235677888888888875 3
Q ss_pred eEEEcCHHhHHH
Q 015464 260 TGAVASAQAAEI 271 (406)
Q Consensus 260 ~AAIas~~aA~~ 271 (406)
..|+.+...+..
T Consensus 154 gi~~~p~~~~~~ 165 (219)
T 3jv9_A 154 AISVLPATALTE 165 (219)
T ss_dssp CEEEEEGGGCCT
T ss_pred cEEehhHHHHHh
Confidence 467777665543
No 70
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=61.41 E-value=11 Score=32.69 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=28.6
Q ss_pred eEEEEEE-eCCCcchHHHHHHHHHhCCceeeeeEee
Q 015464 308 KTSIVFT-LEEGPGMLFKALAVFALRDINLTKIESR 342 (406)
Q Consensus 308 ktsi~f~-~~~~pGaL~~~L~~Fa~~~INLtkIESR 342 (406)
-+.|.+. ++++||.+.++++.|+++|||+-.|-+-
T Consensus 25 ~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 25 QARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 3444333 7899999999999999999999998653
No 71
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=61.40 E-value=11 Score=33.17 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=37.6
Q ss_pred ccEEEEEcCCCcHHHHHHHHH-CCCCceeccCCHHHHHHHHHcCCccEEEEe
Q 015464 119 KVRVAYQGLPGAYSEAAARKA-YPKCETVPCDQFEAAFKAVELWLVDKAVLP 169 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~-f~~~~~~~~~s~~~v~~aV~~g~~d~gvVP 169 (406)
..+|++ ..|+..+.....+ ++..++...++..+++++|.+|++|+++..
T Consensus 124 g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~ 173 (257)
T 2q88_A 124 DAKIGA--PGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLP 173 (257)
T ss_dssp TCCEEE--CTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEE
T ss_pred CceEEE--ECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcC
Confidence 457887 4677655555443 445678899999999999999999998875
No 72
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=60.93 E-value=39 Score=28.56 Aligned_cols=114 Identities=9% Similarity=0.003 Sum_probs=66.2
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhc-cCCeEEEEEEEEeeeeEeecCCC-------CCcc
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-RHRLHIVGEVQLVVNHCLLGLPG-------VLKE 213 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~-~~~l~I~gE~~l~I~h~L~~~~g-------~~l~ 213 (406)
++++...++|.++++++.+|++|+++-++..+.+ ....+. ...+. ....+++.+++ .+++
T Consensus 41 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~-----r~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2pyy_A 41 ESKLIEYSSVPELISAIKDNKVNLGIAAISITAE-----REQNFDFSLPIF-------ASGLQIMVRNLESGTGDIRSID 108 (228)
T ss_dssp CEEEEECSSHHHHHHHHHTTSCSEECSSCBCCHH-----HHHHSEECSCSE-------EEEEEEEEEC-----CCCCSGG
T ss_pred cEEEEEcCCHHHHHHHHHCCCcCEEEeccccCHH-----HHccceecccch-------hcceEEEEECCccccCCcCCHH
Confidence 5778888899999999999999998643321111 000111 11111 11223333322 1234
Q ss_pred Ccc--EEEechHHHHHHHHHHhhcCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 214 ELK--RVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 214 ~I~--~VySHpqal~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+++ +|...... . ...+|.+++...+.+.|..++.+++..+. -.|++.+...+..
T Consensus 109 dL~g~~i~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g~--~D~~~~~~~~~~~ 164 (228)
T 2pyy_A 109 DLPGKVVATTAGS-T-AATYLREHHISVLEVPKIEEAYKALQTKK--ADAVVFDAPVLLF 164 (228)
T ss_dssp GCTTCEEEEETTS-H-HHHHHHHTTCEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred HcCCCeEEEEcCc-H-HHHHHHHcCCceEecCCHHHHHHHHHcCC--CCEEEecHHHHHH
Confidence 432 34432221 1 34677777888889999999999998753 3477777766543
No 73
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=60.21 E-value=92 Score=27.58 Aligned_cols=142 Identities=11% Similarity=0.020 Sum_probs=69.5
Q ss_pred CccEEEEEcCCCc--HHHHHH--HHHCCCCcee-ccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEE
Q 015464 118 TKVRVAYQGLPGA--YSEAAA--RKAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHI 192 (406)
Q Consensus 118 ~~~~Va~lGp~Gs--~s~~AA--~~~f~~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I 192 (406)
+..+|++...-+. +..... ++.++++++. ...+..++.+.+.+|++|+|++.......+.... .|.+..+.+
T Consensus 91 g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~~---~l~~~~~~~ 167 (294)
T 1ixc_A 91 GELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIV---NIAQEDLYL 167 (294)
T ss_dssp EEEEEEECSGGGGTHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCCCTTEEEE---EEEEEEEEE
T ss_pred ceEEEEEccchhHHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCccEEEEecCCCCCCceEE---EEeeccEEE
Confidence 4556666433332 122222 2236766543 3345678899999999999998654321111110 011111111
Q ss_pred EEEEEEeeeeEeecCCCCCccCc---cEEEec----hHHHHHHHHHHhhcCC--e-EEeccCHHHHHHHHHhcCCCCeEE
Q 015464 193 VGEVQLVVNHCLLGLPGVLKEEL---KRVFSH----PQALAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGA 262 (406)
Q Consensus 193 ~gE~~l~I~h~L~~~~g~~l~~I---~~VySH----pqal~QC~~~L~~~~~--~-~i~~~sTA~Aa~~v~~~~~~~~AA 262 (406)
..+-.|-|...+..+++++ .-|... +..-....+|+...+. . ...++|...+.++|..+ ...|
T Consensus 168 ----v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gia 240 (294)
T 1ixc_A 168 ----AVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAG---AASS 240 (294)
T ss_dssp ----EEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHHHHHHHHTT---SCBE
T ss_pred ----EEeCCCccccCCccCHHHHcCCCEEeeCCCCCchHHHHHHHHHHHCCCCcceeeecCCHHHHHHHHHcC---CeEE
Confidence 1223333332222233333 344333 1222445566766443 3 34677777777777765 2366
Q ss_pred EcCHHhH
Q 015464 263 VASAQAA 269 (406)
Q Consensus 263 Ias~~aA 269 (406)
+.+...+
T Consensus 241 ~lp~~~~ 247 (294)
T 1ixc_A 241 IVPASVA 247 (294)
T ss_dssp EEEHHHH
T ss_pred Eechhhh
Confidence 6676654
No 74
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=60.18 E-value=35 Score=31.46 Aligned_cols=121 Identities=14% Similarity=0.018 Sum_probs=75.5
Q ss_pred HHHHHH--HHHCC--CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEe---eeeE
Q 015464 131 YSEAAA--RKAYP--KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLV---VNHC 203 (406)
Q Consensus 131 ~s~~AA--~~~f~--~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~---I~h~ 203 (406)
|.-+|. +..|. .+++.+..+|+.-+.+|.+|..|++|+-.-- +-..+.+.++.++-++--+ -.|.
T Consensus 30 yeGlatgl~~~f~gi~~~i~~mrg~~~RI~aL~~gk~D~aI~S~~a--------a~e~~~~~~r~~~vdFg~~yYv~~h~ 101 (231)
T 2ozz_A 30 YEGLASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLA--------AESYLSQNNLCIALELGPHTYVGEHQ 101 (231)
T ss_dssp HHHHHHHHHHTTTTSCEEEEECSCHHHHHHHHHTTSCSEEEEEHHH--------HHHHHHHSCEEEEEECCTTSSSCCEE
T ss_pred hhHHHHHHHHHhcCCcEEEEEccChHHHHHHHHcCCCCEEEEeccc--------chhhhcccCeEEEEEcCCCccccCeE
Confidence 444553 33464 3567888899999999999999999986432 1111222333333332222 2255
Q ss_pred eecCCCCCccCccEEEechHHHHHHHHHHhh---cCCeEEec-cCHHHHHHHHHhcCCCCeEEEc
Q 015464 204 LLGLPGVLKEELKRVFSHPQALAQCEMTLSN---LGIVRISA-DDTAGAAQMVASIGERDTGAVA 264 (406)
Q Consensus 204 L~~~~g~~l~~I~~VySHpqal~QC~~~L~~---~~~~~i~~-~sTA~Aa~~v~~~~~~~~AAIa 264 (406)
|+.+++ +..+|++|--.+-...|+- |.+ .+.++..+ .+.+++...+..+. -.|+|.
T Consensus 102 li~~~~-~~~~ikrVGvd~gS~dq~~--lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~--IDA~Iw 161 (231)
T 2ozz_A 102 LICRKG-ESGNVKRVGLDSRSADQKI--MTDVFFGDSDVERVDLSYHESLQRIVKGD--VDAVIW 161 (231)
T ss_dssp EEEETT-CGGGCCEEEECTTCHHHHH--HHHHHHTTSCCEEEECCHHHHHHHHHHTS--CCEEEE
T ss_pred EEEeCC-CccccEEEEecCCChhHHH--HHhhhcCCCeEEEEECCHHHHHHHHHcCC--ccEEEE
Confidence 666555 2456799998888777763 333 45555566 78888898888763 346666
No 75
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=59.98 E-value=53 Score=27.63 Aligned_cols=83 Identities=16% Similarity=0.081 Sum_probs=49.7
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEE
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQ 197 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~ 197 (406)
...+|++. .|+..+...+. .+..+....+..+++++|.+|++|+++.+-.. ....+. ......+.+.+...
T Consensus 111 ~g~~i~~~--~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~ 181 (228)
T 2pyy_A 111 PGKVVATT--AGSTAATYLRE--HHISVLEVPKIEEAYKALQTKKADAVVFDAPV-LLFYAA----NEGKGKVEIVGSIL 181 (228)
T ss_dssp TTCEEEEE--TTSHHHHHHHH--TTCEEEEESSHHHHHHHHHTTSSSEEEEEHHH-HHHHHH----TTTTTTEEEEEEEE
T ss_pred CCCeEEEE--cCcHHHHHHHH--cCCceEecCCHHHHHHHHHcCCCCEEEecHHH-HHHHHH----hCCCCcEEEecccc
Confidence 34678875 45544444433 34578889999999999999999999987431 111111 00112466666554
Q ss_pred EeeeeEeecCCC
Q 015464 198 LVVNHCLLGLPG 209 (406)
Q Consensus 198 l~I~h~L~~~~g 209 (406)
-+...+++..++
T Consensus 182 ~~~~~~~~~~~~ 193 (228)
T 2pyy_A 182 REESYGIILPNN 193 (228)
T ss_dssp EEEEECCEECTT
T ss_pred cceeEEEEEeCC
Confidence 444555555443
No 76
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=57.74 E-value=41 Score=28.17 Aligned_cols=115 Identities=17% Similarity=0.066 Sum_probs=62.5
Q ss_pred HCCCCcee-ccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC-------
Q 015464 139 AYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV------- 210 (406)
Q Consensus 139 ~f~~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~------- 210 (406)
.++++++. ...+..++.+.+.+|++|+|++.-.....| +..+.......++++.++-
T Consensus 33 ~~P~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~~---------------~~~~~l~~~~~~~v~~~~~pl~~~~~ 97 (222)
T 4ab5_A 33 MWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEKQNG---------------ISFQPLFAYEMVGICAPDHPLAAKNV 97 (222)
T ss_dssp HSTTEEEEEECCCCSCTHHHHHTTSCSEEEESCCCCCTT---------------EEEEEEEEEEEEEEECTTSGGGGCSE
T ss_pred HCCCcEEEEecCCHHHHHHHHHcCCcCEEEecCCCCcCC---------------eEEEEeecCcEEEEecCCChhhccCC
Confidence 35665542 233446789999999999999853321111 2222223333444444432
Q ss_pred -CccCc---cEEE-ech-HHHHHHHHHHhhcCC--eEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 211 -LKEEL---KRVF-SHP-QALAQCEMTLSNLGI--VRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 211 -~l~~I---~~Vy-SHp-qal~QC~~~L~~~~~--~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+++++ .-|. +.. ....+..+|+.+.+. ....++|...+.++|+.+ ...+|.+...+..
T Consensus 98 i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~gi~~~p~~~~~~ 163 (222)
T 4ab5_A 98 WTAEDFIGETLITYPVPDEMLDLPKKILIPKNINPPRRHSELTIAIIQLVASR---RGIAALPYWTVMP 163 (222)
T ss_dssp ECGGGGSSSCEEECSSCGGGCHHHHHTTGGGTCCCCEEECSCHHHHHHHHHTT---SCBEEEEHHHHHH
T ss_pred cCHHHHcCCCEEecCCCcHHHHHHHHHHHHcCCCCCeEecCCHHHHHHHHHcC---CeEEEcchHHhHH
Confidence 23333 2333 222 222455666665332 256777887788888775 3467777776653
No 77
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=57.31 E-value=47 Score=28.00 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=65.2
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC----CccCcc-
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~----~l~~I~- 216 (406)
++++.+. +|.++++++.+|++|+++-++..+.+..-. ++ .... ......+++++++. ++++++
T Consensus 42 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~--~~--~s~p-------~~~~~~~l~~~~~~~~~~~~~dL~g 109 (227)
T 3tql_A 42 VCTISNQ-PWDSLIPSLKLGKFDALFGGMNITTARQKE--VD--FTDP-------YYTNSVSFIADKNTPLTLSKQGLKG 109 (227)
T ss_dssp EEEEEEC-CHHHHHHHHHHTSCSEECSSCBCCTTGGGT--EE--ECSC-------SBCCEEEEEEETTSCCCCSTTTTTT
T ss_pred eEEEEeC-CHHHHHHHHhCCCCCEEEecCcCCHhHHhh--ee--cccc-------eeccceEEEEeCCCCCCCCHHHhCC
Confidence 4567765 899999999999999986443322111100 00 0001 11223455555442 344442
Q ss_pred -EEEechHHHHHHHHHHhh--cC-CeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 -RVFSHPQALAQCEMTLSN--LG-IVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 -~VySHpqal~QC~~~L~~--~~-~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|....-... ..+|.+ +. ...+.+.|..++.+++..+ .-.|++++...+..
T Consensus 110 ~~v~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~ 164 (227)
T 3tql_A 110 KIIGVQGGTTF--DSYLQDSFGNSITIQRYPSEEDALMDLTSG--RVDAVVGDTPLIKQ 164 (227)
T ss_dssp CEEEEETTSHH--HHHHHHHHGGGSEEEEESSHHHHHHHHTTT--SSSEEESCHHHHHH
T ss_pred CEEEEEecccH--HHHHHHhccccceEEEcCCHHHHHHHHHcC--CcCEEEeChHHHHH
Confidence 4433322111 344544 34 7888999999999998875 34588888776654
No 78
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=56.75 E-value=18 Score=31.85 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=40.2
Q ss_pred EeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHHH
Q 015464 314 TLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQ 388 (406)
Q Consensus 314 ~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L~ 388 (406)
.+++.||.+.++++.|+++|||+-.|-.-.+.... | ..+..|.|+-+ +-.+..++|++++
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~---------g---~~~isftv~~~---~~~~a~~~L~~~~ 82 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVED---------G---KTDITFTCSRD---VGPAAVEKLDSLR 82 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTT---------C---EEEEEEEEETT---THHHHHHHHHHTH
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccC---------C---ccEEEEEEehh---HHHHHHHHHHHHH
Confidence 56899999999999999999999998643222100 0 12567887643 1245566666654
No 79
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=56.64 E-value=25 Score=30.04 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=37.0
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEee
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPI 170 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 170 (406)
...+|++. .|+..+.....+ ...++.+.+..+++++|.+|++|+++..-
T Consensus 115 ~g~~v~~~--~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~~~~~ 163 (233)
T 1ii5_A 115 KNKEVAVV--RDTTAVDWANFY--QADVRETNNLTAAITLLQKKQVEAVMFDR 163 (233)
T ss_dssp TTCEEEEE--TTSHHHHHHHHT--TCEEEEESSHHHHHHHHHTTSCSEEEEEH
T ss_pred CCCeEEEE--CCccHHHHHHHc--CCCeEEcCCHHHHHHHHHcCCccEEEeCH
Confidence 34688875 565555444433 56788999999999999999999998864
No 80
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=55.83 E-value=75 Score=26.61 Aligned_cols=114 Identities=11% Similarity=-0.017 Sum_probs=65.7
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC----CccCcc-
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~----~l~~I~- 216 (406)
.+++... +|.++++++.+|++|+++..+..+.+-. ..++ ....+ .....+++++++. +++|++
T Consensus 42 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~--~~~~--~~~p~-------~~~~~~~~~~~~~~~i~~~~dL~g 109 (226)
T 1wdn_A 42 DYELKPM-DFSGIIPALQTKNVDLALAGITITDERK--KAID--FSDGY-------YKSGLLVMVKANNNDVKSVKDLDG 109 (226)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSEEEEEEECCHHHH--TTSE--ECSCC-------EEEEEEEEEETTCCSCSSSTTTTT
T ss_pred EEEEEEC-CHHHHHHHHhCCCCCEEEEcCcCCHHHh--Cccc--cccch-------hcCceEEEEeCCCCCCCCHHHhCC
Confidence 5666665 7999999999999999876543221110 0000 01111 1223445554432 234442
Q ss_pred -EEEechHHHHHHHHHHhh--cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 -RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 -~VySHpqal~QC~~~L~~--~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|..... .. ...||.+ ++...+.+.|..++.+++..+. -.|++.+...+..
T Consensus 110 ~~i~~~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~ 163 (226)
T 1wdn_A 110 KVVAVKSG-TG-SVDYAKANIKTKDLRQFPNIDNAYMELGTNR--ADAVLHDTPNILY 163 (226)
T ss_dssp CEEEEETT-SH-HHHHHHHHCCCSEEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred CEEEEEcC-Cc-HHHHHHHhCCCceEEEeCCHHHHHHHHHcCC--cCEEEeCcHHHHH
Confidence 4544322 12 2446665 4678888999999999998753 4577777766554
No 81
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=55.62 E-value=56 Score=28.44 Aligned_cols=114 Identities=15% Similarity=0.056 Sum_probs=69.4
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEE--eeeeEeecCCC-C---CccCc
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQL--VVNHCLLGLPG-V---LKEEL 215 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l--~I~h~L~~~~g-~---~l~~I 215 (406)
++++... +|.++++++.+|++|+++..+..+. + ....+.. .-.. .....++.+++ . +++|+
T Consensus 71 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~--------~--r~~~~~~--~p~~~~~~~~~~~~~~~~~~i~~~~dL 137 (268)
T 3qax_A 71 QLEVREF-AFDALILNLKKHRIDAILAGMSITP--------S--RQKEIAL--LPYYGDEVQELMVVSKRSLETPVLPLT 137 (268)
T ss_dssp EEEEEEC-CGGGHHHHHHHTSSSEECSCCBCCH--------H--HHTTSEE--EEEECCCBCEEEEEEETTSCSCCCCGG
T ss_pred eEEEEec-CHHHHHHHHhCCCccEEeecCccCH--------h--Hhcceee--ecceecccceEEEEECCCCCCCCHHHh
Confidence 5677777 9999999999999999763322111 1 1112222 3333 44456666554 2 34444
Q ss_pred c--EEEechHHHHHHHHHHhh-cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHc
Q 015464 216 K--RVFSHPQALAQCEMTLSN-LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 272 (406)
Q Consensus 216 ~--~VySHpqal~QC~~~L~~-~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~y 272 (406)
+ +|....- -.. ..++.+ ++...+.+.|..++.+.+..+. -.|++.+...+..+
T Consensus 138 ~g~~i~~~~g-~~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~~ 193 (268)
T 3qax_A 138 QYSSVAVQTG-TYQ-EHYLLSQPGICVRSFDSTLEVIMEVRYGK--SPVAVLEPSVGRVV 193 (268)
T ss_dssp GSSCEEEETT-SHH-HHHHHTSTTCCEEEESCHHHHHHHHHTTS--SSEEEECHHHHHHH
T ss_pred CCCEEEEecC-cHH-HHHHHhCCCceEEecCCHHHHHHHHHcCC--CCEEEecHHHHHHH
Confidence 2 4443322 222 345554 5678888999999999998753 45788877766655
No 82
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=55.40 E-value=40 Score=30.35 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=27.4
Q ss_pred EeCCCcchHHHHHHHHHhCCceeeeeEeeeC
Q 015464 314 TLEEGPGMLFKALAVFALRDINLTKIESRPQ 344 (406)
Q Consensus 314 ~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~ 344 (406)
.++++||.+.++++.|+++|||.-.|-.-++
T Consensus 42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s 72 (200)
T 4go7_X 42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVS 72 (200)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEECCCC
T ss_pred cCCCCccHHHHHHHHHHHhCcceEEEeeccc
Confidence 5789999999999999999999999965443
No 83
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=54.97 E-value=1.3e+02 Score=27.83 Aligned_cols=154 Identities=9% Similarity=-0.042 Sum_probs=83.3
Q ss_pred cEEEEEcCCCcHHHHHHHHHC--------CCCceeccCC-----HHHHHHHHHcCCccEEEEeeeccccccc--------
Q 015464 120 VRVAYQGLPGAYSEAAARKAY--------PKCETVPCDQ-----FEAAFKAVELWLVDKAVLPIENSVGGSI-------- 178 (406)
Q Consensus 120 ~~Va~lGp~Gs~s~~AA~~~f--------~~~~~~~~~s-----~~~v~~aV~~g~~d~gvVPIENS~~G~V-------- 178 (406)
.|++...|+|+..+.++..+- |.+++..+.+ -.+++++|..|.+|++++..-. ..|.+
T Consensus 3 lk~~~~~~~~~~~~~~~~~fa~~v~~~s~G~i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~~-~~~~~p~~~~~~l 81 (301)
T 2pfz_A 3 WDLPTAYPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTN-FANEDPVYELDGL 81 (301)
T ss_dssp EEEECSSCTTSHHHHHHHHHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGG-GTTTCGGGTGGGS
T ss_pred eEecccCCCCchhhHHHHHHHHHHHHHcCCeEEEEEccCcccCChHHHHHHHHCCceeeEechhhh-ccccCchhhhhcC
Confidence 467777788876565554321 3455544433 4799999999999999886421 11100
Q ss_pred -----------------cccc-chhccCCeEEEEEEEEeeeeEeecCCC-CCccCcc--EEEechHHHHHHHHHHhhcCC
Q 015464 179 -----------------HRNY-DLLLRHRLHIVGEVQLVVNHCLLGLPG-VLKEELK--RVFSHPQALAQCEMTLSNLGI 237 (406)
Q Consensus 179 -----------------~~t~-DlL~~~~l~I~gE~~l~I~h~L~~~~g-~~l~~I~--~VySHpqal~QC~~~L~~~~~ 237 (406)
.+.+ +.+.+.++++.+-....-.+ +...+. .+++|++ +|..- ... -..+++..|+
T Consensus 82 Pf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lGa 157 (301)
T 2pfz_A 82 PFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQG-IFANRDIKQVSDMKGLKWRAY-SPV--TAKIAELVGA 157 (301)
T ss_dssp TTSCCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEES-SHH--HHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEecccCCcc-eeeCCCCCChHHhcCCEEecC-Chh--HHHHHHHcCC
Confidence 0001 12234678887654443333 444333 2456665 45552 222 2567888898
Q ss_pred eEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecCc
Q 015464 238 VRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKI 281 (406)
Q Consensus 238 ~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I 281 (406)
..++.. .++....+..+ . -.|+..+.......++.=+.+.+
T Consensus 158 ~pv~~~-~~E~y~ALq~G-~-vDg~~~~~~~~~~~~~~ev~ky~ 198 (301)
T 2pfz_A 158 QPVTVQ-QAELAQAMATG-V-IDSYMSSGSTGFDTKTYEYIKKF 198 (301)
T ss_dssp EEEECC-GGGHHHHHHTT-S-CSEEEECHHHHHHTTGGGTCCEE
T ss_pred cceecC-HHHHHHHHhcC-e-eeEEecCccccccccHHHHhhhh
Confidence 877653 33334444433 2 23567766665555554333333
No 84
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=54.66 E-value=24 Score=31.80 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=38.3
Q ss_pred ccEEEEEcCCCcHHHHHHHHHC----CCCceeccCCHHHHHHHHHcCCccEEEEee
Q 015464 119 KVRVAYQGLPGAYSEAAARKAY----PKCETVPCDQFEAAFKAVELWLVDKAVLPI 170 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f----~~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 170 (406)
..+|++. .|+..+.....++ ....++.+.+..+++++|.+|++|+++...
T Consensus 130 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~~ 183 (287)
T 2vha_A 130 GKAVVVT--SGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDD 183 (287)
T ss_dssp TCEEEEE--TTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEEH
T ss_pred CCEEEEe--CCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeCh
Confidence 4578875 6776665554443 256788999999999999999999998753
No 85
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=54.02 E-value=85 Score=28.47 Aligned_cols=118 Identities=13% Similarity=-0.038 Sum_probs=62.9
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEE-eeeeEeecCCCC---CccCcc-
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQL-VVNHCLLGLPGV---LKEELK- 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l-~I~h~L~~~~g~---~l~~I~- 216 (406)
++++....+..++++++.+|++|+++....... ...-...++.+++.... +...+++++++. +++|++
T Consensus 33 ~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~i~s~~dL~G 105 (308)
T 2x26_A 33 KISWVEFPAGPQMLEALNVGSIDLGSTGDIPPI-------FAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADLKG 105 (308)
T ss_dssp EEEEEECSSHHHHHHHHHHTSCSEEEECSHHHH-------HHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGGTT
T ss_pred ceEEEECCCcHHHHHHHHCCCCCEEcccCcHHH-------HHHhcCCCeEEEEEecCCCCceEEEEeCCCCCCCHHHcCC
Confidence 467788888889999999999999986432110 00001134454443321 234566666543 344543
Q ss_pred -EEEechH--HHHHHHHHHhhcCCe---E-EeccCHHHHHHHHHhcCCCCeEEEcCHHh
Q 015464 217 -RVFSHPQ--ALAQCEMTLSNLGIV---R-ISADDTAGAAQMVASIGERDTGAVASAQA 268 (406)
Q Consensus 217 -~VySHpq--al~QC~~~L~~~~~~---~-i~~~sTA~Aa~~v~~~~~~~~AAIas~~a 268 (406)
+|...+. .......+|++.++. + +...+..++.+.+..+. - .|++.+...
T Consensus 106 k~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~-v-Da~~~~~~~ 162 (308)
T 2x26_A 106 HKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGN-V-DAWAIWDPY 162 (308)
T ss_dssp SEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTS-S-SEEEEETTH
T ss_pred CEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCC-C-CEEEecchh
Confidence 5555332 122345667665542 1 12345667777777643 3 355544433
No 86
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=53.74 E-value=23 Score=30.83 Aligned_cols=114 Identities=18% Similarity=0.115 Sum_probs=65.4
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCC-----CCccCcc
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPG-----VLKEELK 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g-----~~l~~I~ 216 (406)
.+++++. +|.+++.++.+|++|+++-++..+.+.. . .+... .-++.....++++++ .++++++
T Consensus 45 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r~-----~-----~~~~s-~p~~~~~~~~~~~~~~~~~i~~~~dL~ 112 (245)
T 3k4u_A 45 KLKLVPT-SWDGLIPGLVTEKFDIIISGMTISQERN-----L-----RVNFV-EPYIVVGQSLLVKKGLEKGVKSYKDLD 112 (245)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCBCCHHHH-----T-----TSEEC-SCSEEECEEEEEETTTTTTCCSGGGGC
T ss_pred eEEEEEc-cHHHHHHHHhCCCcCEEEecCcCCHHHH-----h-----hcCcc-hhhheeceEEEEECCcccccCCHHHhc
Confidence 4566665 7999999999999998754433221110 0 00000 011222345555544 1345554
Q ss_pred ----EEEechHHHHHHHHHHhh--cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 ----RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 ----~VySHpqal~QC~~~L~~--~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|.... .... ..+|.+ ++...+.+.|..++.+++..+ .-.|+|++...+..
T Consensus 113 ~~g~~i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 169 (245)
T 3k4u_A 113 KPELTLVTKF-GVSA-EYAAKRLFKNAKLKTYDTEAEAVQEVLNG--KADMFIFDLPFNVA 169 (245)
T ss_dssp CSSCEEEEET-TSHH-HHHHHHHCSSSEEEEESSHHHHHHHHHSS--SSEEEEEEHHHHHH
T ss_pred cCCcEEEEeC-CcHH-HHHHHhhCCcCCEEEeCCHHHHHHHHHcC--CCcEEEEcHHHHHH
Confidence 343332 2222 335554 468888999999999999875 35688888765543
No 87
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=53.36 E-value=49 Score=27.99 Aligned_cols=114 Identities=11% Similarity=-0.021 Sum_probs=62.5
Q ss_pred HCCCCcee-ccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCC--------
Q 015464 139 AYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPG-------- 209 (406)
Q Consensus 139 ~f~~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g-------- 209 (406)
.++++.+. ...+..++.+.+.+|++|+|++.-.....+ +..+.......++++.++
T Consensus 36 ~~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~---------------l~~~~l~~~~~~~v~~~~hpl~~~~~ 100 (232)
T 3ho7_A 36 ELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAETEG---------------LEDDLLYYEEFLGYVSRCEPLFEQDV 100 (232)
T ss_dssp HSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSCCCCTT---------------EEEEEEEEEEEEEEECTTSGGGGSSS
T ss_pred HCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCC---------------eEEEEecccCEEEEEcCCCccccCCC
Confidence 35666543 345678999999999999999864322111 122222233344444433
Q ss_pred CCccCcc---EEEechH--HHHHHHHHHhhcCC----eEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHH
Q 015464 210 VLKEELK---RVFSHPQ--ALAQCEMTLSNLGI----VRISADDTAGAAQMVASIGERDTGAVASAQAAE 270 (406)
Q Consensus 210 ~~l~~I~---~VySHpq--al~QC~~~L~~~~~----~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~ 270 (406)
.+++++. -|...+. .-.+..+|+.+.+. ....++|...+.++|+.+ ...||.+...+.
T Consensus 101 ~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~gi~~~p~~~~~ 167 (232)
T 3ho7_A 101 IRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLVESG---QGITFIPQLTVE 167 (232)
T ss_dssp BCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHHHHHTT---CCEEEEEGGGGG
T ss_pred cCHHHhcCCCEEEecCCCcHHHHHHHHHHHcCCCcCceeEEeCCHHHHHHHHHcC---CcEEEecHHHhh
Confidence 2233332 2222111 12345566665332 345777877788888765 346777777665
No 88
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=53.10 E-value=8.6 Score=34.36 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=37.1
Q ss_pred CccEEEEEcCCCcHHHHHHHHH-------CCCCceeccCCHHHHHHHHHcCCccEEEEeee
Q 015464 118 TKVRVAYQGLPGAYSEAAARKA-------YPKCETVPCDQFEAAFKAVELWLVDKAVLPIE 171 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~-------f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPIE 171 (406)
...+|++. .|+..+.....+ ++..+++.+++.++++++|.+|++|+++..-.
T Consensus 126 ~g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~ 184 (268)
T 3hv1_A 126 AGKTLGAQ--AGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRV 184 (268)
T ss_dssp TTCCEEEE--TTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHH
T ss_pred CCCEEEEE--eCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHH
Confidence 44678886 555444332222 22367889999999999999999999988643
No 89
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=52.06 E-value=1.1e+02 Score=26.10 Aligned_cols=132 Identities=10% Similarity=-0.032 Sum_probs=69.9
Q ss_pred CccEEEEEcCCCc--HHHHHH--HHHCCCCce-eccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEE
Q 015464 118 TKVRVAYQGLPGA--YSEAAA--RKAYPKCET-VPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHI 192 (406)
Q Consensus 118 ~~~~Va~lGp~Gs--~s~~AA--~~~f~~~~~-~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I 192 (406)
+..+|++...-+. +..... ++.++++++ +...+..++.+.+.+|++|+|++.... .+ +
T Consensus 27 g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~i~~~~~~~~~~~L~~g~~Dl~i~~~~~--~~---------------~ 89 (238)
T 3onm_A 27 GSLIIGASDDTADTLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAKV--DS---------------H 89 (238)
T ss_dssp CCEEEEECHHHHTTHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHHTSCSEEEECSCC---C---------------C
T ss_pred eeEEEeccchhhHHHHHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHCCCccEEEEecCC--CC---------------c
Confidence 5567776533221 122211 224676654 345677889999999999999986442 11 1
Q ss_pred EEEEEEeeeeEeecCCCCCc---cCccEEE-echHH-HHHHHHHHhhcCC--e-EEeccCHHHHHHHHHhcCCCCeEEEc
Q 015464 193 VGEVQLVVNHCLLGLPGVLK---EELKRVF-SHPQA-LAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGAVA 264 (406)
Q Consensus 193 ~gE~~l~I~h~L~~~~g~~l---~~I~~Vy-SHpqa-l~QC~~~L~~~~~--~-~i~~~sTA~Aa~~v~~~~~~~~AAIa 264 (406)
..+.......++++.++-.+ ..+.-|. .+... .....+|+.+.+. . ...++|...+.++|..+ ...||.
T Consensus 90 ~~~~l~~~~~~~v~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Giail 166 (238)
T 3onm_A 90 PHVILRTSPTLWYCSVDYQFQPGEPVPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAG---LGVTAR 166 (238)
T ss_dssp CEEEEEEECEEEEEETTCCCCTTSCEEEEEESSSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHTT---SCBEEE
T ss_pred ceEEeecCCEEEEEcCCCCcccCCCcceEECCCchhHHHHHHHHHHHCCCCeEEEEEeCCHHHHHHHHHcC---CeEEEe
Confidence 11222233344444443322 2333333 22222 3445667766543 2 34677777777777765 235666
Q ss_pred CHHhH
Q 015464 265 SAQAA 269 (406)
Q Consensus 265 s~~aA 269 (406)
+...+
T Consensus 167 p~~~~ 171 (238)
T 3onm_A 167 PIEMM 171 (238)
T ss_dssp EGGGC
T ss_pred chHHc
Confidence 66554
No 90
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=51.49 E-value=73 Score=27.64 Aligned_cols=114 Identities=9% Similarity=-0.031 Sum_probs=66.4
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC----CccCcc-
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~----~l~~I~- 216 (406)
++++++. +|.++++++.+|++|+++.++..+.+..-. ++ ....+ ......++.+++. ++++++
T Consensus 63 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~--~~--~s~p~-------~~~~~~~~~~~~~~~i~~~~dL~g 130 (249)
T 4f3p_A 63 TYKIQPM-DFAGLIPALQTQNIDVALSGMTIKEERRKA--ID--FSDPY-------YDSGLAAMVQANNTTIKSIDDLNG 130 (249)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSCSEEEEEEECCHHHHTT--EE--ECSCC-------EEEEEEEEEETTCCSCCSSGGGTT
T ss_pred ceEEEec-CHHHHHHHHHCCCCCEEEeccccCHHHHcC--cc--eecce-------eeccEEEEEECCCCCcCChHHhCC
Confidence 5667775 799999999999999987655433211100 00 01111 2233445554432 234442
Q ss_pred -EEEechHHHHHHHHHHhh--cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 -RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 -~VySHpqal~QC~~~L~~--~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|..-. .... ..||.+ ++..++.+.|..++.+++..+. -.|+|+....+..
T Consensus 131 ~~i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~Gr--vDa~i~~~~~~~~ 184 (249)
T 4f3p_A 131 KVIAAKT-GTAT-IDWIKAHLKPKEIRQFPNIDQAYLALEAGR--VDAAMHDTPNVLF 184 (249)
T ss_dssp SEEEEET-TSHH-HHHHHHHCCCSEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred CEEEEeC-CChH-HHHHHhcCCCceEEEcCCHHHHHHHHHcCC--eeEEEeCcHHHHH
Confidence 443322 2222 346655 4678889999999999998753 4578887776654
No 91
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=51.49 E-value=24 Score=30.28 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=25.6
Q ss_pred EeCCCcchHHHHHHHHHhCCceeeeeEee
Q 015464 314 TLEEGPGMLFKALAVFALRDINLTKIESR 342 (406)
Q Consensus 314 ~~~~~pGaL~~~L~~Fa~~~INLtkIESR 342 (406)
..+++||.+.++++.++++|||+-.|-.-
T Consensus 23 g~~~~~G~~a~if~~La~~~InVd~I~q~ 51 (167)
T 2dt9_A 23 GIPDQPGIAAKVFQALAERGIAVDMIIQG 51 (167)
T ss_dssp EEECSTTHHHHHHHHHHHHTCCCSCEEBC
T ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEEcC
Confidence 35789999999999999999999998653
No 92
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=50.09 E-value=1.1e+02 Score=25.63 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=66.9
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCCC----ccCcc-
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVL----KEELK- 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~~----l~~I~- 216 (406)
.+++.+. +|.++++++.+|++|+ +.++..+. + ....+.. ..-......+++.+++.. +++++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~-~~~~~~~~--------~--r~~~~~~-s~p~~~~~~~~~~~~~~~~~~~~~dL~g 117 (234)
T 3h7m_A 51 TVEFRLG-AWSEMFSALKSGRVDV-LQGISWSE--------K--RARQIDF-TPPHTIVYHAIFARRDSPPAAGLEDLRG 117 (234)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSE-EEEEECCH--------H--HHTTEEE-EEEEEEEEEEEEEESSSCCCSSGGGGTT
T ss_pred ceEEEeC-CHHHHHHHHhCCCeeE-EEeccCCH--------h--HHhhcCC-CccccccceEEEEECCCCCCCCHHHhCC
Confidence 5667754 8999999999999998 34443221 1 1111222 223445556777765532 33332
Q ss_pred -EEEechHHHHHHHHHHhh--cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 -RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 -~VySHpqal~QC~~~L~~--~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|....-. . -..+|.+ ++...+.+.|..++.+++..+. -.|+|+....+..
T Consensus 118 ~~i~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~ 171 (234)
T 3h7m_A 118 RKVALHRDG-I-MHEYLAERGYGKDLVLTPTPADALRLLAAGG--CDYAVVAMVPGMY 171 (234)
T ss_dssp SCEEEETTS-H-HHHHHHTTTCGGGEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred CEEEEEeCc-h-HHHHHHhcCCCceEEEeCCHHHHHHHHHcCC--ceEEEeccHHHHH
Confidence 33332211 1 1356665 3467889999999999998753 4577777766553
No 93
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=50.00 E-value=1.3e+02 Score=26.29 Aligned_cols=117 Identities=11% Similarity=-0.045 Sum_probs=63.7
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCC-----CCccCcc
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPG-----VLKEELK 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g-----~~l~~I~ 216 (406)
++++++. +|.++++++.+|++|+++-.+..+.+..- .++ ....+ ......++.+++ .+++|++
T Consensus 69 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r~~--~~~--fs~p~-------~~~~~~~~~~~~~~~~i~~~~dL~ 136 (259)
T 4dz1_A 69 KLNITEY-AWDGMLGAVASGQADVAFSGISITDKRKK--VID--FSEPY-------YINSFYLVSMANHKITLNNLNELN 136 (259)
T ss_dssp EEEEEEC-CHHHHHHHHHHTSSSEEEEEEECCHHHHT--TEE--ECCCS-------EEEEEEEEEETTSCCCCCSGGGGG
T ss_pred eEEEEEc-CHHHHHHHHhCCCCCEEEECCcCCHHHhh--ccc--cccch-------hhCceEEEEEcCCCCCCCCHHHhC
Confidence 5677777 99999999999999998765543322110 000 01111 112233333221 1344442
Q ss_pred --EEEechH--HHHHHHHHHhhcC----CeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHc
Q 015464 217 --RVFSHPQ--ALAQCEMTLSNLG----IVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 272 (406)
Q Consensus 217 --~VySHpq--al~QC~~~L~~~~----~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~y 272 (406)
+|....- ....-++++...+ .+.+.+.|..++.+.+..+. -.|++++...+..+
T Consensus 137 g~~v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~~ 198 (259)
T 4dz1_A 137 KYSIGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGN--LDLAFIEEPVYFTF 198 (259)
T ss_dssp GSCEEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTS--CSEEEEEHHHHHHH
T ss_pred CCEEEEeCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCC--CCEEEecHHHHHHH
Confidence 3433221 1122223333322 57778889999999998863 45777777665433
No 94
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=49.63 E-value=10 Score=32.96 Aligned_cols=115 Identities=13% Similarity=0.007 Sum_probs=65.8
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC-----CccCcc
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV-----LKEELK 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~-----~l~~I~ 216 (406)
.+++++. +|.+++.++.+|++|+++.++..+.+-. + .+.... -++.....++.+++. ++++++
T Consensus 55 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r~-----~-----~~~fs~-p~~~~~~~~~~~~~~~~~i~~~~dL~ 122 (239)
T 3kbr_A 55 KLVVVPT-SWPNLMRDFADDRFDIAMSGISINLERQ-----R-----QAYFSI-PYLRDGKTPITLCSEEARFQTLEQID 122 (239)
T ss_dssp EEEEEEC-CTTTHHHHHHTTCCSEECSSCBCCHHHH-----T-----TCEECS-CSEEECEEEEEEGGGGGGGSSHHHHS
T ss_pred ceEEEEe-CHHHHHHHHHCCCcCEEEeCCcCCHHHc-----C-----ccccch-HHhccCcEEEEECCcccccCCHHHhc
Confidence 4677776 9999999999999999865543221110 0 000000 111222344444321 234443
Q ss_pred ----EEEechHHHHHHHHHHhh--cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHc
Q 015464 217 ----RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 272 (406)
Q Consensus 217 ----~VySHpqal~QC~~~L~~--~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~y 272 (406)
+|....... -..++.+ ++...+.+.|..++.+++..+. -.|+|.....+..+
T Consensus 123 ~~g~~v~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~gr--vDa~~~~~~~~~~~ 180 (239)
T 3kbr_A 123 QPGVTAIVNPGGT--NEKFARANLKKARILVHPDNVTIFQQIVDGK--ADLMMTDAIEARLQ 180 (239)
T ss_dssp STTCEEEECTTSH--HHHHHHHHCSSSEEEECCCTTTHHHHHHTTS--CSEEEEEHHHHHHH
T ss_pred CCCcEEEEcCCCc--HHHHHHHhCCCCceEEeCCHHHHHHHHHcCC--cCEEEEchHHHHHH
Confidence 444332211 1345554 4678888999999999998753 45788877766543
No 95
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=49.51 E-value=16 Score=31.82 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=36.6
Q ss_pred CccEEEEEcCCCcHHHHHHHHHC---C-CCceeccCCHHHHHHHHHcCCccEEEEee
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPI 170 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f---~-~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 170 (406)
...+|++. .|+..+.....++ | ..+++.+.+..+++++|.+|++|+++.+-
T Consensus 147 ~g~~i~~~--~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~ 201 (259)
T 2v25_A 147 KGANIGVA--QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDK 201 (259)
T ss_dssp TTCEEEEE--TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSSEEEEEH
T ss_pred CCCEEEEe--cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcCCCcEEEecH
Confidence 34578875 4554444444343 2 34678899999999999999999998853
No 96
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=49.17 E-value=14 Score=31.58 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=38.5
Q ss_pred CCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHHHH
Q 015464 316 EEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQE 389 (406)
Q Consensus 316 ~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L~~ 389 (406)
++.||.+.++++.|+++|||.-.|-+-+ -+..|.|+-+ + ...+++++|++
T Consensus 29 ~~~~g~~~~if~~La~~~I~vd~I~~s~-------------------~~Isf~v~~~----~-~~~~il~~l~~ 78 (157)
T 3mah_A 29 LLSWHFMRKLFEIFEFYQEPVDMVATSE-------------------VGVSLTIDND----K-NLPDIVRALSD 78 (157)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSCEECCS-------------------SEEEEEESCC----T-THHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHcCCCEEEEEecC-------------------CEEEEEECCh----H-HHHHHHHHHhc
Confidence 5689999999999999999999887532 2567888721 1 56778888875
No 97
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=49.14 E-value=1.4e+02 Score=27.62 Aligned_cols=148 Identities=12% Similarity=0.005 Sum_probs=78.8
Q ss_pred cEEEEEcCCCcHHHHHHHHHC--------CCCceeccCC-----HHHHHHHHHcCCccEEEEeeeccccccc--------
Q 015464 120 VRVAYQGLPGAYSEAAARKAY--------PKCETVPCDQ-----FEAAFKAVELWLVDKAVLPIENSVGGSI-------- 178 (406)
Q Consensus 120 ~~Va~lGp~Gs~s~~AA~~~f--------~~~~~~~~~s-----~~~v~~aV~~g~~d~gvVPIENS~~G~V-------- 178 (406)
.|++..-|+|+..+.++..+- |.+++..+.+ -.+++++|..|.+|++.+..-. ..|.+
T Consensus 4 lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~-~~~~~p~~~~~~l 82 (301)
T 2pfy_A 4 WTMTAEQPDANYLTQNARQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSA-LGNEDPLFEIDSV 82 (301)
T ss_dssp EEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGG-GTTTCGGGGGGGS
T ss_pred EEecccCCCCcchhHHHHHHHHHHHHHcCCeEEEEEccchhhCChHHHHHHHHCCCeeeehhhhhh-hhccCcccccccC
Confidence 467777777776555554221 2344444433 4789999999999999886421 11110
Q ss_pred -----------------cccc-chhccCCeEEEEEEEEeeeeEeecCCC-CCccCcc--EEEechHHHHHHHHHHhhcCC
Q 015464 179 -----------------HRNY-DLLLRHRLHIVGEVQLVVNHCLLGLPG-VLKEELK--RVFSHPQALAQCEMTLSNLGI 237 (406)
Q Consensus 179 -----------------~~t~-DlL~~~~l~I~gE~~l~I~h~L~~~~g-~~l~~I~--~VySHpqal~QC~~~L~~~~~ 237 (406)
.+.+ +.+.+.++++.+-....-.+ +..++. .+++|++ +|..- ... -..+++..|+
T Consensus 83 Pfl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lGa 158 (301)
T 2pfy_A 83 PFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQG-IYTKKPVAALADLKGTRFRAY-SAS--TSHMAALMGA 158 (301)
T ss_dssp TTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEEC-SHH--HHHHHHHTTS
T ss_pred CcccCCHHHHHHHHHHhhHHHHHHHHHCCCEEEEeecCCCcc-eecCCCCCCHHHhCCCEEeec-Chh--HHHHHHHcCC
Confidence 0001 12234678877654443333 444333 2456665 45542 222 2467888898
Q ss_pred eEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCc
Q 015464 238 VRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLD 275 (406)
Q Consensus 238 ~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ygL~ 275 (406)
..++.. .++.-..+..+ .- .|+..+.......++.
T Consensus 159 ~pv~~~-~~E~y~ALq~G-~v-Dg~~~~~~~~~~~~~~ 193 (301)
T 2pfy_A 159 VPTTVQ-TPEVPQAFSTG-VI-DAMLTSPATGVDSQAW 193 (301)
T ss_dssp EEEECC-GGGHHHHHHTT-SC-SBEEECHHHHHHTTGG
T ss_pred cceecc-HHHHHHHHhcc-ee-eeEecCccccccccHH
Confidence 877653 23333333333 22 3556666655445543
No 98
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=48.49 E-value=34 Score=30.99 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=37.6
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEee
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPI 170 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 170 (406)
...+|++ +.|+..+.....+ ..++....+..+++++|.+|++|+++++-
T Consensus 163 ~G~~v~v--~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~i~~~ 211 (283)
T 2yln_A 163 KGVKTAQ--SLTSNYGEKAKAA--GAQLVPVDGLAQSLTLIEQKRADATLNDE 211 (283)
T ss_dssp TTSEEEE--CTTSHHHHHHHHT--TCEEEECSSHHHHHHHHHTTSCCEEEEEH
T ss_pred CCCEEEE--ecCchHHHHHHHc--CCeEEEeCCHHHHHHHHHcCCCCEEEecH
Confidence 3467886 5676655544433 46788899999999999999999998863
No 99
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=48.36 E-value=22 Score=36.73 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=49.4
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHHHH
Q 015464 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHL 387 (406)
Q Consensus 308 ktsi~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~~L 387 (406)
+..+.+.++++||+|.++++++. +-|+++++=|-. .. ..-..+|.+|........+.+++.|
T Consensus 338 ~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~--~~--------------~~~~~~~~~e~~~~~~~~~~~~~~l 399 (514)
T 1tdj_A 338 EALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFA--DA--------------KNACIFVGVRLSRGLEERKEILQML 399 (514)
T ss_dssp EEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECC--CS--------------SBCEEEEEEECSSTHHHHHHHHHHH
T ss_pred cccccccCCCCCchHHHHHHHhC--CCceEEEEeecc--CC--------------CeEEEEEEEEeCCcHHHHHHHHHHH
Confidence 56778889999999999999887 789999998832 11 2345677777653246788888888
Q ss_pred HHcC
Q 015464 388 QEFA 391 (406)
Q Consensus 388 ~~~~ 391 (406)
++..
T Consensus 400 ~~~g 403 (514)
T 1tdj_A 400 NDGG 403 (514)
T ss_dssp TSSS
T ss_pred HhCC
Confidence 7653
No 100
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=47.21 E-value=20 Score=31.30 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=27.2
Q ss_pred eEEEEE-EeCCCcchHHHHHHHHHhCCceeeeeEe
Q 015464 308 KTSIVF-TLEEGPGMLFKALAVFALRDINLTKIES 341 (406)
Q Consensus 308 ktsi~f-~~~~~pGaL~~~L~~Fa~~~INLtkIES 341 (406)
-+.|.+ .++++||.+.++++.|+++|||+-.|-.
T Consensus 15 ~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~ 49 (178)
T 2dtj_A 15 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ 49 (178)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEc
Confidence 344433 3589999999999999999999988754
No 101
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=46.30 E-value=1.4e+02 Score=25.37 Aligned_cols=143 Identities=16% Similarity=0.051 Sum_probs=69.5
Q ss_pred CccEEEEEcCCCc--HHHHHH--HHHCCCCcee-ccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEE
Q 015464 118 TKVRVAYQGLPGA--YSEAAA--RKAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHI 192 (406)
Q Consensus 118 ~~~~Va~lGp~Gs--~s~~AA--~~~f~~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I 192 (406)
+..+|++...-+. +..... ++.++++++. ...+..++.+.+.+|++|+|++.-.....+... ..|.+..+.+
T Consensus 30 g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~ 106 (238)
T 2hxr_A 30 GSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEA---IPLLTESLAL 106 (238)
T ss_dssp -CEEEEECHHHHTTTHHHHHHHHHHHCTTSCEEEEECCHHHHHHHHHTTSCSEEEEESSCCCTTEEE---EEEEEEEEEE
T ss_pred CeEEEeechhhHHHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHcCCCcEEEEcCCCCccccee---eeeccCcEEE
Confidence 4567776432221 222222 2346776653 345678889999999999999863321111100 0111111111
Q ss_pred EEEEEEeeeeEeecCCCCCccCcc---EEE-echHHH-HHHHHHHhhcCC--e-EEeccCHHHHHHHHHhcCCCCeEEEc
Q 015464 193 VGEVQLVVNHCLLGLPGVLKEELK---RVF-SHPQAL-AQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGAVA 264 (406)
Q Consensus 193 ~gE~~l~I~h~L~~~~g~~l~~I~---~Vy-SHpqal-~QC~~~L~~~~~--~-~i~~~sTA~Aa~~v~~~~~~~~AAIa 264 (406)
.++-+|-|...+..+++++. -|. +..... .....|+.+.+. . ...++|...+..+|..+. ..|+.
T Consensus 107 ----v~~~~hpl~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~---Gi~~l 179 (238)
T 2hxr_A 107 ----VVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRTS---LSTLL 179 (238)
T ss_dssp ----EEETTSGGGGCSEECGGGGGGCEEEEECTTSHHHHHHHHHHHHTTCCCEEEEEESCHHHHHHHHHHSS---CBEEE
T ss_pred ----EEcCCCcccccCCCCHHHHhcCCeEEecCCccHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcCC---cEEEe
Confidence 12233333332223344443 332 222222 335566655443 2 346677777777777752 35677
Q ss_pred CHHhHH
Q 015464 265 SAQAAE 270 (406)
Q Consensus 265 s~~aA~ 270 (406)
+...+.
T Consensus 180 p~~~~~ 185 (238)
T 2hxr_A 180 PAAIAT 185 (238)
T ss_dssp ETHHHH
T ss_pred cHHHhc
Confidence 766654
No 102
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=45.96 E-value=96 Score=26.50 Aligned_cols=122 Identities=15% Similarity=0.021 Sum_probs=61.3
Q ss_pred HCCCCcee-ccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCCCccCc--
Q 015464 139 AYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEEL-- 215 (406)
Q Consensus 139 ~f~~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~~l~~I-- 215 (406)
.++++++. ...+..++.+.+.+|++|+|++.-.....|... ..|.+..+.++ ++-.|-|.. +..+++++
T Consensus 44 ~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~---~~l~~~~~~~v----~~~~hpl~~-~~i~~~dL~~ 115 (241)
T 3oxn_A 44 EAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLRS---EILGRVGVLCL----LSKQHPLAN-QEMSLDDYLS 115 (241)
T ss_dssp HCTTCEEEEEECCGGGHHHHHHTSCCSEEEECCSSCCTTEEE---EEEECCCEEEE----EETTSGGGG-SCCCHHHHHT
T ss_pred HCCCCEEEEEECCcccHHHHHHcCCCCEEEecCCCCCcccee---EEeecccEEEE----EeCCCCccc-CCCCHHHHhc
Confidence 46766543 345567889999999999999964322111111 11222233222 233343333 22333333
Q ss_pred -cEEEech--HHHHHHHHHHhhc-CCe-EEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 216 -KRVFSHP--QALAQCEMTLSNL-GIV-RISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 216 -~~VySHp--qal~QC~~~L~~~-~~~-~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
.-|.-.+ ....+..+++.+. ... ...++|...+..+|+.+ ...||.+...+..
T Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~giailp~~~~~~ 173 (241)
T 3oxn_A 116 HPHAMIAISDGVKALIEQALIDKPQRKMVLRAYHLEAALAIVDTL---PIIITVPADLAYL 173 (241)
T ss_dssp SEEEECSCCHHHHHHHHHHSTTSCCCEEEEECSSTHHHHHHC--C---CCEEEEEHHHHHH
T ss_pred CCeEEEecCCCccchhHHHHHhhccceEEEECCcHHHHHHHHhCC---CeEEEcHHHHHHH
Confidence 2332222 1123344455443 122 34677777777777764 3467777777664
No 103
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=45.90 E-value=52 Score=28.16 Aligned_cols=121 Identities=16% Similarity=0.052 Sum_probs=62.0
Q ss_pred HCCCCcee-ccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCCCccCcc-
Q 015464 139 AYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELK- 216 (406)
Q Consensus 139 ~f~~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~~l~~I~- 216 (406)
.++++++. ...+..++.+.|.+|++|+|++.......+. ....|.+..+.+ .++-.|-|.. +..+++++.
T Consensus 33 ~~P~v~l~l~~~~~~~l~~~L~~g~iDl~i~~~~~~~~~l---~~~~l~~~~~~~----v~~~~hpla~-~~i~l~dL~~ 104 (218)
T 2y7p_A 33 RAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGF---FQRRLFRHRYVC----MFRKDHPSAK-SPMSLKQFTE 104 (218)
T ss_dssp HCTTCEEEEECCCTTTHHHHHHHTSSCEEEECCTTCCTTE---EEEEEEEECEEE----EEETTCSSCC-SSCCHHHHHH
T ss_pred HCCCCEEEEEeCCcccHHHHHhCCCceEEEecCCCCCcce---eEEEeeeccEEE----EEcCCCCCCC-CCCCHHHHhh
Confidence 46776643 3345678899999999999997532111111 111122222222 2344555543 334445443
Q ss_pred --EEE-echH-HHHHHHHHHhhcCC--e-EEeccCHHHHHHHHHhcCCCCeEEEcCHHhHH
Q 015464 217 --RVF-SHPQ-ALAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGAVASAQAAE 270 (406)
Q Consensus 217 --~Vy-SHpq-al~QC~~~L~~~~~--~-~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~ 270 (406)
-|. ..+. ...+..+++.+.+. . ...++|...+..+|+.+. ..||.+..++.
T Consensus 105 ~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~g~---Giailp~~~~~ 162 (218)
T 2y7p_A 105 LEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTD---LIATVPQRFAV 162 (218)
T ss_dssp SEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTSS---CBEEEEHHHHH
T ss_pred CCCEEeecCCCccCHHHHHHHhcCCcceEEEEcCcHHHHHHHHhCCC---EEEEcHHHHHH
Confidence 232 2211 12234455555443 2 346677777777777652 35666666543
No 104
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=44.37 E-value=87 Score=27.70 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=63.1
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC---CccCcc--
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK-- 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~---~l~~I~-- 216 (406)
.++++..+ |.++++++.+|++|+++.++..+.+ ....+... .-.......++++++. ++++++
T Consensus 81 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~~~----------r~~~~~~s-~p~~~~~~~l~~~~~~~i~~~~dL~g~ 148 (272)
T 2pvu_A 81 DYELKNIG-WDPLFASLQSKEVDMGISGITITDE----------RKQSYDFS-DPYFEATQVILVKQGSPVKNALDLKGK 148 (272)
T ss_dssp CEEEEECC-HHHHHHHHHHTSSSEECSSCBCCHH----------HHTTEEEC-SCCEEECEEEEEETTCCCCSGGGGTTS
T ss_pred ceEEEECC-HHHHHHHHhCCCCCEEEeCCcCCHH----------HHhcCccc-hhhhccceEEEEECCCCCCCHHHhCCC
Confidence 56677765 9999999999999998643221111 00111110 1112233455555543 233332
Q ss_pred EEEechHHHHHHHHHHhhc---CCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 RVFSHPQALAQCEMTLSNL---GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 ~VySHpqal~QC~~~L~~~---~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|....- -.. ..+|.+. ....+.+.+..++.+++..+. -.|++++...+..
T Consensus 149 ~i~~~~g-~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~ 202 (272)
T 2pvu_A 149 TIGVQNA-TTG-QEAAEKLFGKGPHIKKFETTVVAIMELLNGG--VDAVITDNAVANE 202 (272)
T ss_dssp CEEEETT-SHH-HHHHHHHHCSSTTEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred eEEEEcC-chH-HHHHHHhcCCCCeEEEcCCHHHHHHHHHcCC--ccEEEeCHHHHHH
Confidence 3443221 111 2344442 467778889999999998753 4577777766554
No 105
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=43.12 E-value=57 Score=30.59 Aligned_cols=82 Identities=13% Similarity=0.028 Sum_probs=51.0
Q ss_pred cEEEEEcCCCcHHHHHHHHHC-C--C------CceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhcc---
Q 015464 120 VRVAYQGLPGAYSEAAARKAY-P--K------CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLR--- 187 (406)
Q Consensus 120 ~~Va~lGp~Gs~s~~AA~~~f-~--~------~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~--- 187 (406)
.+|++..+..+.++.+...++ . . ...+...+.++++.+|.+|++|.+++... ++..+.+
T Consensus 117 k~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~vDa~~~~~~---------~~~~~~~~~~ 187 (310)
T 3n5l_A 117 LTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQVDVATFNTE---------GMERLELTQP 187 (310)
T ss_dssp CEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHCH
T ss_pred CEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCCccEEEecch---------hHHHHHHhCc
Confidence 468765443344466555333 2 1 33455688899999999999999998643 1222221
Q ss_pred ---CCeEEEEEEEEeeeeEeecCCCC
Q 015464 188 ---HRLHIVGEVQLVVNHCLLGLPGV 210 (406)
Q Consensus 188 ---~~l~I~gE~~l~I~h~L~~~~g~ 210 (406)
.++++.++...--.+.++++++.
T Consensus 188 ~~~~~lrvl~~s~~~p~~~i~~~~~~ 213 (310)
T 3n5l_A 188 EKARQLKVIWKSPLIPGDPLVWRNNL 213 (310)
T ss_dssp HHHTTEEEEEEEEEEECCEEEEETTS
T ss_pred cchhCEEEEEECCCCCCCcEEEECCC
Confidence 36888876654445677777663
No 106
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=42.71 E-value=96 Score=27.64 Aligned_cols=131 Identities=16% Similarity=0.110 Sum_probs=65.1
Q ss_pred CccEEEEEcCCCcH--HHHHH--HHHCCCCce-eccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhc-cCCeE
Q 015464 118 TKVRVAYQGLPGAY--SEAAA--RKAYPKCET-VPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-RHRLH 191 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~--s~~AA--~~~f~~~~~-~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~-~~~l~ 191 (406)
+..+|++...-+.+ ..... ++.++++++ +...+..++.+.+.+|++|+|++.-.....+... ..|. +..+.
T Consensus 95 g~l~i~~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~ 171 (306)
T 3fzv_A 95 GQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLDSTIET---EPLMPPQRPH 171 (306)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSCCTTEEE---EESSCCBCCE
T ss_pred ceEEEEechhhhHHHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHCCCccEEEEeccccccccce---eeeeeccccE
Confidence 45677765433321 11111 224666554 2345678889999999999999864433222111 1122 22222
Q ss_pred EEEEEEEeeeeEeecCCCCCcc---CccEEEec-hHHHHHHHHHHhhcCC--e-EEeccCHHHHHHHHHhc
Q 015464 192 IVGEVQLVVNHCLLGLPGVLKE---ELKRVFSH-PQALAQCEMTLSNLGI--V-RISADDTAGAAQMVASI 255 (406)
Q Consensus 192 I~gE~~l~I~h~L~~~~g~~l~---~I~~VySH-pqal~QC~~~L~~~~~--~-~i~~~sTA~Aa~~v~~~ 255 (406)
+ .++-.|-|...+..+++ +-.-|... +..-.....|+.+.+. . ...++|...+..+|..+
T Consensus 172 ~----v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g 238 (306)
T 3fzv_A 172 A----LLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQG 238 (306)
T ss_dssp E----EEETTCTTTTSSEECHHHHTTSCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHHHHTT
T ss_pred E----EecCCCcccCCCCCCHHHHcCCCEEEecCCcchHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcC
Confidence 2 23444544433222222 23334332 2223344556655443 2 35667777777777764
No 107
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=41.98 E-value=1.1e+02 Score=27.99 Aligned_cols=115 Identities=15% Similarity=-0.000 Sum_probs=67.2
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchh-ccCCeEEEEEEEEeeeeEeecCCCC-----CccCc
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL-LRHRLHIVGEVQLVVNHCLLGLPGV-----LKEEL 215 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL-~~~~l~I~gE~~l~I~h~L~~~~g~-----~l~~I 215 (406)
++++....++.+++++|.+|++|+++.+..... ... ...++.+++.....-...++.+++. +++|+
T Consensus 65 ~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~s~~DL 136 (346)
T 3qsl_A 65 DVSIADFAGGSKALQAVVGGSADVVSGAFEHTL--------SLQAKGQFYRAFALQGRAPMIGVGVSKKNLPGYKGPADL 136 (346)
T ss_dssp EEEEEECSSHHHHHHHHHTTSCSEEEEETHHHH--------HHHHTTCCEEEEEESBSSCCEEEEEETTTCTTCCSGGGG
T ss_pred eEEEEecCChHHHHHHHHCCCCCEEccchHHHH--------HHHhCCCCeEEEEecccCCCcEEEEecCcccCCCChHHc
Confidence 467788899999999999999999987654321 111 1224555443332223455554432 34555
Q ss_pred c--EEEec-hH--HHHHHHHHHhhcC-----CeEEeccCHHHHHHHHHhcCCCCeEEEcCH
Q 015464 216 K--RVFSH-PQ--ALAQCEMTLSNLG-----IVRISADDTAGAAQMVASIGERDTGAVASA 266 (406)
Q Consensus 216 ~--~VySH-pq--al~QC~~~L~~~~-----~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~ 266 (406)
+ +|... +- .....+.+|++.+ ++.+...+.+++...+..+. -+ |++...
T Consensus 137 ~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~-vD-a~~~~~ 195 (346)
T 3qsl_A 137 KGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQ-ID-AISNTD 195 (346)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTS-CS-EEEEET
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCC-cc-EEEecc
Confidence 3 56554 32 2334467777644 45677777777777777653 33 444433
No 108
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=41.28 E-value=57 Score=29.83 Aligned_cols=122 Identities=16% Similarity=0.104 Sum_probs=61.0
Q ss_pred HCCCCceec-cCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCCCccCcc-
Q 015464 139 AYPKCETVP-CDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELK- 216 (406)
Q Consensus 139 ~f~~~~~~~-~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~~l~~I~- 216 (406)
.++++.+.. ..+..++.+.+.+|++|+|++.......|... ..|.+..+.++ .+-.|-|.. +..+++++.
T Consensus 130 ~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~v----~~~~hpl~~-~~i~~~dL~~ 201 (315)
T 1uth_A 130 RAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFFQ---RRLFRHRYVCM----FRKDHPSAK-SPMSLKQFSE 201 (315)
T ss_dssp HCTTCEEEEECTTSSCHHHHHHHTSCCEEEECCTTCCTTEEE---EEEEEECEEEE----EETTCSSCC-SSCCHHHHHH
T ss_pred HCCCcEEEEEeCCcccHHHHHHCCCCCEEEecCCCCCCCceE---EEeeccceEEE----EeCCCCCcC-CCCCHHHHhc
Confidence 367766432 33456788999999999999864322111111 11112222221 223333332 223334432
Q ss_pred --EE-EechH-HHHHHHHHHhhcCC--e-EEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 --RV-FSHPQ-ALAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 --~V-ySHpq-al~QC~~~L~~~~~--~-~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
-| +..+. ......+|+.+.+. . .+.++|......+|..+ ...||.+...+..
T Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~giailp~~~~~~ 260 (315)
T 1uth_A 202 LEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHST---DLIATVPQRFAVR 260 (315)
T ss_dssp SEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTS---SCBEEEEHHHHHH
T ss_pred CCeEEEecCCCCCCchhHHHHhcCCCceEEEECCcHHHHHHHHhcC---CEEEEcHHHHHHH
Confidence 23 22211 12345567766443 2 34667776677777765 2466777766653
No 109
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=41.28 E-value=1e+02 Score=27.96 Aligned_cols=88 Identities=9% Similarity=-0.107 Sum_probs=50.9
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC---CccCc--c
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEEL--K 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~---~l~~I--~ 216 (406)
++++....+..+.++++.+|++|+++......+ . ..-...++.+++.....-...|+++++. +++|+ |
T Consensus 35 ~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~----~---~~~~g~~~~~~~~~~~~~~~~l~~~~~s~i~s~~DL~Gk 107 (302)
T 3ix1_A 35 DVDIVFPTNPTDPIQLTASGAIPLALSYQPDVI----L---ARSKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADLVGL 107 (302)
T ss_dssp EEEEECCSSTTHHHHHHHHTSCSEEEECHHHHH----H---HHHTTCCEEEEEEEECSCCEEEEEEGGGCCSSGGGGTTS
T ss_pred cEEEecCCCCchHHHHHHCCCCCEEecCHHHHH----H---HHHCCCCEEEEEEEeccCCEEEEEECCCCCCChHHcCCC
Confidence 467887777779999999999999987422111 0 0002235666666554434677776542 34444 3
Q ss_pred EEEechH--HHHHHHHHHhhcC
Q 015464 217 RVFSHPQ--ALAQCEMTLSNLG 236 (406)
Q Consensus 217 ~VySHpq--al~QC~~~L~~~~ 236 (406)
+|....- .....+.+|++.+
T Consensus 108 ~i~~~~~~~~~~~~~~~l~~~G 129 (302)
T 3ix1_A 108 TVGYPGIPVNEPILKTMVEAAG 129 (302)
T ss_dssp EEEECSCTTHHHHHHHHHHHTT
T ss_pred EEEeCCCcchHHHHHHHHHHcC
Confidence 5544332 2233566776644
No 110
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=39.43 E-value=18 Score=33.97 Aligned_cols=67 Identities=10% Similarity=0.027 Sum_probs=29.8
Q ss_pred ccccccccc---CCCCCCCCccEEEEEcCCCcHHHHHHHHHC--C-CCceeccCCHHHHHHHHHcCCccEEEEeee
Q 015464 102 AEPLSIMEL---SSSPDDGTKVRVAYQGLPGAYSEAAARKAY--P-KCETVPCDQFEAAFKAVELWLVDKAVLPIE 171 (406)
Q Consensus 102 mr~~~~~ei---s~~~~~~~~~~Va~lGp~Gs~s~~AA~~~f--~-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIE 171 (406)
||++|.++. +++..+ ...+|+++|+-|.++...|+.+- | ++.+...+...+..+++. .+|+.++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~-~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~~~~~~~~--~aDvVilavp 74 (298)
T 2pv7_A 2 MRESYANENQFGFKTINS-DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILA--NADVVIVSVP 74 (298)
T ss_dssp -----------CCCCSCT-TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHT--TCSEEEECSC
T ss_pred hhhHHhhhhccCccccCC-CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcccCHHHHhc--CCCEEEEeCC
Confidence 567776555 322222 23589999988988876665432 2 233332222222333444 3566666554
No 111
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=38.87 E-value=18 Score=32.11 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=60.9
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC---CccCcc--
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK-- 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~---~l~~I~-- 216 (406)
.+++++. +|.++++++.+|++|+++-++..+ -+. ...+... .-+.....+++++++. ++++++
T Consensus 61 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t--------~~r--~~~~~fs-~p~~~~~~~~~~~~~~~i~~~~dL~g~ 128 (268)
T 3hv1_A 61 DVEWQAI-DWDMKETELKNGTIDLIWNGYSVT--------DER--KQSADFT-EPYMVNEQVLVTKKSSGIDSVAGMAGK 128 (268)
T ss_dssp EEEEEEC-CGGGHHHHHHHTSCSEECSSCBCC--------HHH--HTTCEEC-CCCEEECEEEEEEGGGCCCSSGGGTTC
T ss_pred cEEEEEC-CHHHHHHHHHCCCCCEEEecCccC--------HHH--HhcCcCc-HHHeeCceEEEEECCCCCCCHHHhCCC
Confidence 4567776 599999999999999876332211 110 0001110 0112233445544332 233332
Q ss_pred EEEech-----HHHHHHHHHHhh--cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 RVFSHP-----QALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 ~VySHp-----qal~QC~~~L~~--~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|..-. ..+.+-.+++.. ++.+.+.+.|..++.+++..+. -.|+|++...+..
T Consensus 129 ~i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr--vDa~i~~~~~~~~ 188 (268)
T 3hv1_A 129 TLGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGR--IDGLLIDRVYANY 188 (268)
T ss_dssp CEEEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTS--CSEEEEEHHHHHH
T ss_pred EEEEEeCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCC--CCEEEeCHHHHHH
Confidence 232211 111111122222 2367888999999999998863 4578877776654
No 112
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=38.76 E-value=52 Score=29.84 Aligned_cols=114 Identities=9% Similarity=0.016 Sum_probs=65.3
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC---CccCcc--
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK-- 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~---~l~~I~-- 216 (406)
++++...+ |.++++++.+|++|+++..+..+.+. ...+... .-.......++++++. +++|++
T Consensus 98 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~~~r----------~~~~~~~-~p~~~~~~~l~~~~~~~i~sl~dL~gk 165 (291)
T 2yjp_A 98 KVEFVLTE-AANRVEYVRSGKVDLILANFTQTPER----------AEAVDFA-DPYMKVALGVVSPKNKPITDMAQLKDQ 165 (291)
T ss_dssp GEEEEECC-GGGHHHHHHTTSCSEECSSCBCCHHH----------HTTEEEC-CCCEEECEEEEEETTSCCCSGGGGTTS
T ss_pred eEEEEEcc-HHHHHHHHhCCCeeEEEeCCCCChHH----------Hccceec-cCeeecceEEEEeCCCCCCCHHHhCCC
Confidence 45666665 88999999999999987543211110 0111111 1122334556666553 234442
Q ss_pred EEEechHHHHHHHHHHhh--cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 ~VySHpqal~QC~~~L~~--~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|.. +..-.. ..+|.+ ++..++.+.+..++.+.+..+. -.|++.+...+..
T Consensus 166 ~v~~-~~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~ 218 (291)
T 2yjp_A 166 TLLV-NKGTTA-DAFFTKSHPEVKLLKFDQNTETFDALKDGR--GVALAHDNALLWA 218 (291)
T ss_dssp EEEE-ETTSHH-HHHHHHHCTTSEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred EEEE-ecCCcH-HHHHHHhCCCceEEEeCCHHHHHHHHHcCC--ccEEEecHHHHHH
Confidence 4544 222222 234544 3677888899999999988753 4577777666554
No 113
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=38.18 E-value=1.5e+02 Score=26.21 Aligned_cols=115 Identities=15% Similarity=0.073 Sum_probs=64.1
Q ss_pred CceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCCC---ccCcc--E
Q 015464 143 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVL---KEELK--R 217 (406)
Q Consensus 143 ~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~~---l~~I~--~ 217 (406)
+++++. +|.+++.++.+|++|+++-.+.- +-+. ...+.. ..-+......++++++.. +++++ +
T Consensus 65 v~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--------t~~r--~~~~~~-s~p~~~~~~~l~~~~~~~i~sl~dL~g~~ 132 (287)
T 2vha_A 65 VKLIPI-TSQNRIPLLQNGTFDFECGSTTN--------NVER--QKQAAF-SDTIFVVGTRLLTKKGGDIKDFADLKGKA 132 (287)
T ss_dssp EEEEEC-CTTTHHHHHHTTSCSEECSSCBC--------CHHH--HTTCEE-EEEEEEEEEEEEEETTSSCCSGGGGTTCE
T ss_pred EEEEEC-CHHHHHHHHHCCCeeEEeccccC--------Ccch--hhcccc-cceeeecceEEEEECCCCCCCHHHcCCCE
Confidence 456666 67899999999999987532211 1110 111221 122344455666665532 34442 4
Q ss_pred EEechH--HHHHHHHHHhh--cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 218 VFSHPQ--ALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 218 VySHpq--al~QC~~~L~~--~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
|..-.- .......++.. ++...+.+.|..++.+.+..+. -.|+|.+...+..
T Consensus 133 v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~--vDa~i~~~~~~~~ 188 (287)
T 2vha_A 133 VVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGR--AVAFMMDDALLAG 188 (287)
T ss_dssp EEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCC--eeEEEeChHHHHH
Confidence 443221 11222333333 3677888999999999998753 3577777665544
No 114
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=38.17 E-value=91 Score=26.63 Aligned_cols=50 Identities=6% Similarity=-0.075 Sum_probs=36.1
Q ss_pred CccEEEEEcCCCcHHHHHHHH---HCCC--Ccee-ccCCHHHHHHHHHcCCccEEEEe
Q 015464 118 TKVRVAYQGLPGAYSEAAARK---AYPK--CETV-PCDQFEAAFKAVELWLVDKAVLP 169 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~---~f~~--~~~~-~~~s~~~v~~aV~~g~~d~gvVP 169 (406)
...+|++. .|+..+..... .++. ..+. ...+..+++++|.+|++|+++..
T Consensus 114 ~g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~ 169 (246)
T 4eq9_A 114 GGKSTEVV--QATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFD 169 (246)
T ss_dssp TTCEEEEC--TTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEE
T ss_pred CCCEEEEe--cCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEec
Confidence 34688874 67665555554 4553 4555 34699999999999999999886
No 115
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=37.96 E-value=83 Score=26.87 Aligned_cols=115 Identities=8% Similarity=-0.062 Sum_probs=61.3
Q ss_pred CceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCC-CC---CccCc--c
Q 015464 143 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLP-GV---LKEEL--K 216 (406)
Q Consensus 143 ~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~-g~---~l~~I--~ 216 (406)
+++.+. +|.+++.++.+|++|+++-++..+.+.. .. +... .-.......+++++ +. +++++ +
T Consensus 49 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~-----~~-----~~~s-~p~~~~~~~~~~~~~~~~i~~~~dL~g~ 116 (246)
T 4eq9_A 49 VKFEKT-EWSGVFAGLDADRYNMAVNNLSYTKERA-----EK-----YLYA-APIAQNPNVLVVKKDDSSIKSLDDIGGK 116 (246)
T ss_dssp EEEEEC-CHHHHHHHHHTTSCSEECSSCCCCHHHH-----HH-----EEEC-CCCEECCEEEEEETTCCSCSSGGGCTTC
T ss_pred EEEEeC-CHHHHHHHHhCCCcCEEecccccChhhh-----hc-----eeec-cceecCceEEEEECCCCCCCCHHHhCCC
Confidence 456777 9999999999999999764332221110 00 0000 11122234555554 32 23444 2
Q ss_pred EEEech--HHHHHHHHHHhhcC---CeEEec-cCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 RVFSHP--QALAQCEMTLSNLG---IVRISA-DDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 ~VySHp--qal~QC~~~L~~~~---~~~i~~-~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|.... ........++...+ +.++.. .|..++.+++..+. -.|+|++...+..
T Consensus 117 ~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~--vDa~~~~~~~~~~ 175 (246)
T 4eq9_A 117 STEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQ--FDYKIFDKIGVET 175 (246)
T ss_dssp EEEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred EEEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCC--ceEEEecHHHHHH
Confidence 443322 12233344444432 455534 48889999988753 4577877766553
No 116
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=37.36 E-value=1.1e+02 Score=30.23 Aligned_cols=69 Identities=20% Similarity=0.177 Sum_probs=43.0
Q ss_pred ceEEEEEE-eCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHHHHHH
Q 015464 307 YKTSIVFT-LEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALG 385 (406)
Q Consensus 307 ~ktsi~f~-~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~~al~ 385 (406)
+-+.|.+. .+++||.+.++++.|+++|||+-.|-. ++.... .| .-...|.|+-+ +..+..++|+
T Consensus 263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q-~~s~~~--------~g---~~~isf~v~~~---~~~~a~~~l~ 327 (421)
T 3ab4_A 263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ-NVFSVE--------DG---TTDITFTCPRS---DGRRAMEILK 327 (421)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEE-CCCC----------CC---EEEEEEEEETT---THHHHHHHHH
T ss_pred CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEc-cCcccc--------CC---cceEEEEEech---hHHHHHHHHH
Confidence 34445443 688999999999999999999998843 221100 00 02466777642 2245566777
Q ss_pred HHHHc
Q 015464 386 HLQEF 390 (406)
Q Consensus 386 ~L~~~ 390 (406)
+++..
T Consensus 328 ~~~~~ 332 (421)
T 3ab4_A 328 KLQVQ 332 (421)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 76543
No 117
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=36.60 E-value=97 Score=26.59 Aligned_cols=117 Identities=12% Similarity=0.011 Sum_probs=61.5
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC---CccCcc--
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK-- 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~---~l~~I~-- 216 (406)
++++... +|.++++++.+|++|+++..+..+.+- ...++ ....+ ......++++++. +++|++
T Consensus 82 ~v~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~~--~~~~~--~~~p~-------~~~~~~~~~~~~~~i~~~~dL~g~ 149 (259)
T 2v25_A 82 KIKLVAV-NAKTRGPLLDNGSVDAVIATFTITPER--KRIYN--FSEPY-------YQDAIGLLVLKEKKYKSLADMKGA 149 (259)
T ss_dssp SEEEEEC-CTTTHHHHHHTTSCSEECSSCBCCHHH--HTTEE--ECSCS-------EEEEEEEEEEGGGCCCSGGGCTTC
T ss_pred ceEEEEc-CHHHHHHHHhCCCCCEEEecCccCHHH--HhcCc--ccccc-------eeCceEEEEeCCCCCCCHHHhCCC
Confidence 4566666 679999999999999987543211110 00010 00011 1112233333321 233332
Q ss_pred EEEech--HHHHHHHHHHhhcCC--eEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHc
Q 015464 217 RVFSHP--QALAQCEMTLSNLGI--VRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 272 (406)
Q Consensus 217 ~VySHp--qal~QC~~~L~~~~~--~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~y 272 (406)
+|.... ........++.+.+. ..+.+.|..++.+.+..+. -.|++.+...+..+
T Consensus 150 ~i~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~~ 207 (259)
T 2v25_A 150 NIGVAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKR--VDAFSVDKSILLGY 207 (259)
T ss_dssp EEEEETTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHTTT
T ss_pred EEEEecCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcCC--CcEEEecHHHHHHH
Confidence 343222 112233445554443 6678889999999988753 45777776655443
No 118
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=36.57 E-value=1.5e+02 Score=28.15 Aligned_cols=151 Identities=12% Similarity=0.000 Sum_probs=81.4
Q ss_pred ccEEEEEcCCCcHHHHHHHHH-------C-CCCceeccCC-----HHHHHHHHHcCCccEEEEeeecc------------
Q 015464 119 KVRVAYQGLPGAYSEAAARKA-------Y-PKCETVPCDQ-----FEAAFKAVELWLVDKAVLPIENS------------ 173 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~-------f-~~~~~~~~~s-----~~~v~~aV~~g~~d~gvVPIENS------------ 173 (406)
..+++...|.|.....++..+ - |.+++..+.+ ..+++++|..|.+|++++..-..
T Consensus 10 ~l~~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~~av~~G~id~~~~~~~~~~~~~P~~~~~~l 89 (327)
T 2hpg_A 10 TLRFGHVLAPGEPYHQAFLKWAKAVEEKTNGDVRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSARLGMYVKDIGVMNL 89 (327)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHHHHHHHTTTSEEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHHHHTTTSGGGGGGGS
T ss_pred EEEEEccCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCccCCCHHHHHHHHhCCCccEEEechHhhhhhCccHHhccC
Confidence 467888878886655554432 1 2344443332 36899999999999998864210
Q ss_pred ----------------------ccccccc-ccchhcc-CCeEEEEE-EEEeeeeEeecCCC-CCccCcc--EEEechHHH
Q 015464 174 ----------------------VGGSIHR-NYDLLLR-HRLHIVGE-VQLVVNHCLLGLPG-VLKEELK--RVFSHPQAL 225 (406)
Q Consensus 174 ----------------------~~G~V~~-t~DlL~~-~~l~I~gE-~~l~I~h~L~~~~g-~~l~~I~--~VySHpqal 225 (406)
.+|.+.. ..+.+.+ .++++.+- ......+ +..++. .+++|++ +|..-+-.
T Consensus 90 Pfl~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~g~~~L~~~~~~g~~~-~~~~~pI~s~~DLkG~KiRv~~~~- 167 (327)
T 2hpg_A 90 AYFIDFMGAKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQGYRH-FVTNKPIRKPEDLNGLRIRTPGAP- 167 (327)
T ss_dssp TTHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEEEEEE-EEESSCCSSGGGGTTCEEECCSSH-
T ss_pred CeEECCCCCCcHHHHHHHHHHHHcCHHHHHHHHHHHhhCCeEEEEEeccCccee-EecCCCCCCHHHHCCCEEEeCCCH-
Confidence 0121111 1112233 67888776 4444433 333333 3566765 56654322
Q ss_pred HHHHHHHhhcCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCc
Q 015464 226 AQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLD 275 (406)
Q Consensus 226 ~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ygL~ 275 (406)
-...+++..|+..++..- ++....+..+ . -.|+..+.......++.
T Consensus 168 -~~~~~~~alGa~pv~m~~-~Evy~ALq~G-~-VDg~~~p~~~~~~~~~~ 213 (327)
T 2hpg_A 168 -AWQESIRSLGAIPVAVNF-GEIYTAVQTR-A-VDGAELTYANVYNGGLY 213 (327)
T ss_dssp -HHHHHHHHHTSEEECCCG-GGHHHHHHTT-S-CSEEEECHHHHHHTTGG
T ss_pred -HHHHHHHHcCCEeeecCH-HHHHHHHHcC-C-eeEEECCHHHHHHcChh
Confidence 235678888987765432 2333333332 2 34666666555444543
No 119
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=36.06 E-value=34 Score=32.67 Aligned_cols=43 Identities=7% Similarity=-0.123 Sum_probs=35.3
Q ss_pred CCcHHHHHHHHHC---C-CCceeccCCHHHHHHHHHcCCccEEEEee
Q 015464 128 PGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPI 170 (406)
Q Consensus 128 ~Gs~s~~AA~~~f---~-~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 170 (406)
.|+.+|.++..++ | +...+++.+..+++.+|..|++|+++...
T Consensus 151 ~Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~al~~G~vD~~~~~~ 197 (314)
T 2dvz_A 151 TCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNL 197 (314)
T ss_dssp TTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHHTSSSEEEEEH
T ss_pred CCcHHHHHHHHHHHHhCCCeEEcccCCHHHHHHHHHcCCceEEEEcH
Confidence 4888898876543 3 45678999999999999999999998865
No 120
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=35.68 E-value=2.6e+02 Score=26.54 Aligned_cols=132 Identities=12% Similarity=-0.033 Sum_probs=73.6
Q ss_pred ccEEEEEcCCCcHHHHHHHHH-------C-CCCceeccC-----CHHHHHHHHHcCCccEEEEeeeccc--------ccc
Q 015464 119 KVRVAYQGLPGAYSEAAARKA-------Y-PKCETVPCD-----QFEAAFKAVELWLVDKAVLPIENSV--------GGS 177 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~-------f-~~~~~~~~~-----s~~~v~~aV~~g~~d~gvVPIENS~--------~G~ 177 (406)
..+++...|.|+....++..+ - |.+++..+. +..+++++|..|.+|++++..-... -+.
T Consensus 35 ~l~~~~~~~~~~~~~~~~~~fa~~v~e~t~G~v~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~ 114 (361)
T 2zzv_A 35 RWRIQTAWDAGTVGYSLFQKFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSS 114 (361)
T ss_dssp EEEEEESSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSC
T ss_pred EEEEeccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCcccCHHHHHHHHHcCceeEEEeccccccccCcHHHHHhc
Confidence 467888778886545444322 1 234544333 5689999999999999988643211 010
Q ss_pred ccccc-------------------c-hhccCCeEEEEEEEEeeeeEeecCCC-CCccCcc--EEEechHHHHHHHHHHhh
Q 015464 178 IHRNY-------------------D-LLLRHRLHIVGEVQLVVNHCLLGLPG-VLKEELK--RVFSHPQALAQCEMTLSN 234 (406)
Q Consensus 178 V~~t~-------------------D-lL~~~~l~I~gE~~l~I~h~L~~~~g-~~l~~I~--~VySHpqal~QC~~~L~~ 234 (406)
....+ + .+.+.++++.+ ......+.+...++ .+++|++ +|..-. . -...+++.
T Consensus 115 lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~-~~~g~~~~~~~~~pI~s~~DLkG~kirv~~-~--~~~~~~~~ 190 (361)
T 2zzv_A 115 YALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVG-PVQHDLNIIHSKKPIRRFEDFKGVKLRVPG-G--MIAEVFAA 190 (361)
T ss_dssp CTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEE-EECCCCCCEEESSCCCSGGGGTTCEEECCS-H--HHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHcCchHHHHHHHHHHCCcEEec-ccCCccccceeCCCcCChHHhCCCEEeecC-H--HHHHHHHH
Confidence 11110 0 12345788887 55444443433333 3566776 555443 2 23567888
Q ss_pred cCCeEEeccCHHHHHHHHHhc
Q 015464 235 LGIVRISADDTAGAAQMVASI 255 (406)
Q Consensus 235 ~~~~~i~~~sTA~Aa~~v~~~ 255 (406)
.|+..++. +.++....+..+
T Consensus 191 lGa~pv~~-~~~e~~~ALq~G 210 (361)
T 2zzv_A 191 AGASTVLL-PGGEVYPALERG 210 (361)
T ss_dssp TTCEEECC-CGGGHHHHHHTT
T ss_pred cCCeeeec-ChHHHHHHHHcC
Confidence 89887765 444555555543
No 121
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=35.60 E-value=2.5e+02 Score=25.26 Aligned_cols=122 Identities=19% Similarity=0.074 Sum_probs=63.0
Q ss_pred HCCCCcee-ccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeec-CCC-CCccCc
Q 015464 139 AYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLG-LPG-VLKEEL 215 (406)
Q Consensus 139 ~f~~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~-~~g-~~l~~I 215 (406)
.++++++. ...+..+..+.+.+|++|+|++.......|... ..|.+..+. +..+-.|-|.. ... .+++++
T Consensus 115 ~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~l~~---~~L~~~~~~----~v~~~~hpla~~~~~~i~~~dL 187 (312)
T 2h9b_A 115 AHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKH---SLLRNERLM----VAVHASHPLNQMKDKGVHLNDL 187 (312)
T ss_dssp TCTTCEEEEEECCHHHHHHHHHTTSCSEEEESSCCCCTTEEE---EEEEEEEEE----EEEETTSGGGGGTTTCBCGGGS
T ss_pred HCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEeCCCCCCCceE---EEeecceEE----EEEcCCCccccccCCCCCHHHH
Confidence 35776653 345678999999999999999864321111111 011111111 12233444443 322 334444
Q ss_pred ---cEEEech----HHHHHHHHHHhhcCC---eEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHH
Q 015464 216 ---KRVFSHP----QALAQCEMTLSNLGI---VRISADDTAGAAQMVASIGERDTGAVASAQAAE 270 (406)
Q Consensus 216 ---~~VySHp----qal~QC~~~L~~~~~---~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~ 270 (406)
.-|.-.+ ....+..+|+...+. ....++|...+.++|..+. ..|+.+...++
T Consensus 188 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~---Gia~lp~~~~~ 249 (312)
T 2h9b_A 188 IDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAGE---GISLVPASTQS 249 (312)
T ss_dssp TTSEEEECCCSSSSSHHHHHHHHHHTTTCCCSEEEECSSHHHHHHHHHTTS---CBEEEEGGGGG
T ss_pred cCCCEEEeCCCCCchHHHHHHHHHHHcCCCCCceEEecCHHHHHHHHHcCC---cEEEecchhhh
Confidence 3343211 123445667766443 2456777777777777652 35666665543
No 122
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=34.71 E-value=2.8e+02 Score=25.72 Aligned_cols=169 Identities=11% Similarity=0.025 Sum_probs=88.0
Q ss_pred cEEEEEcCCCcHHHHHHHHH------CCCCceeccCC-----HHHHHHHHHcCCccEEEEeeec----------------
Q 015464 120 VRVAYQGLPGAYSEAAARKA------YPKCETVPCDQ-----FEAAFKAVELWLVDKAVLPIEN---------------- 172 (406)
Q Consensus 120 ~~Va~lGp~Gs~s~~AA~~~------f~~~~~~~~~s-----~~~v~~aV~~g~~d~gvVPIEN---------------- 172 (406)
.|++...|+|+..+.++..+ -|.+++..+.+ ..+++++|..|.+|++++..-.
T Consensus 3 lk~a~~~~~~~~~~~~~~~fa~~v~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl 82 (316)
T 2vpn_A 3 WRYAHEEYEGDVQDVFAQAFKGYVEDNSDHTVQVYRFGELGESDDIMEQTQNGILQFVNQSPGFTGSLIPSAQIFFIPYL 82 (316)
T ss_dssp EEEECSSCTTSHHHHHHHHHHHHHHHSSSCEEEEECTTCC----CHHHHHHTTSCSEEEECHHHHHHHSGGGGGGGSTTC
T ss_pred EEEecCCCCCCHHHHHHHHHHHHhhCCCeEEEEEecCCCCCChHHHHHHHhCCCceEEeecchhhhccCcchhheecCee
Confidence 46777777887666555432 13455555544 3789999999999999886210
Q ss_pred --c-c-------cc--ccccc-cchhccCCeEEEEEEEEeeeeEeecCCC-CCccCcc--EEEechHHHHHHHHHHhhcC
Q 015464 173 --S-V-------GG--SIHRN-YDLLLRHRLHIVGEVQLVVNHCLLGLPG-VLKEELK--RVFSHPQALAQCEMTLSNLG 236 (406)
Q Consensus 173 --S-~-------~G--~V~~t-~DlL~~~~l~I~gE~~l~I~h~L~~~~g-~~l~~I~--~VySHpqal~QC~~~L~~~~ 236 (406)
+ . .| .+.+. .+.+.+.++++.+-......+.. ..+. .+++|++ +|..-+-.. -.++++..|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~~~g~~~~~-~~~pI~s~~DlkG~KiR~~~~~~--~~~~~~~lG 159 (316)
T 2vpn_A 83 MPTDMDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPEGEMVVT-ADEPITSPEDFDNKKIRTMTNPL--LAETYKAFG 159 (316)
T ss_dssp SCSSHHHHHHHHHHCHHHHTHHHHHHHTTTEEEEEEEEEEEEEEE-ESSCCCSGGGGTTCEEEECSCHH--HHHHHHHHT
T ss_pred cCCHHHHHHHHHcCchHHHHHHHHHHHHcCCEEEEeecCCceEEe-cCCCCCChHHhCCCEEEeCCCHH--HHHHHHHcC
Confidence 0 0 11 11111 12233467888876554444433 4333 3566665 566533222 246788889
Q ss_pred CeEEec--cCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecCccCCCCCe-eEEEEEec
Q 015464 237 IVRISA--DDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNV-TRFLILAR 296 (406)
Q Consensus 237 ~~~i~~--~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~d~~~N~-TRF~vi~~ 296 (406)
+..++. ...-.|.+ .+ .- .|+..+.......++.=+.+.+.+....+ +-++++++
T Consensus 160 a~pv~m~~~Evy~ALq---~G-~V-Dg~~~~~~~~~~~~~~ev~~y~~~~~~~~~~~~~~~n~ 217 (316)
T 2vpn_A 160 ATPTPLPWGEVYGGLQ---TG-II-DGQENPIFWIESGGLYEVSPNLTFTSHGWFTTAMMANQ 217 (316)
T ss_dssp CEEEECCGGGHHHHHH---HT-SC-SEEEEEHHHHHHTTGGGTCCEEEECCCCEEEEEEEEEH
T ss_pred CeeeecCHHHHHHHHH---cC-Cc-ceeeCCHHHHHhcCHHHhhhhheeccccccceEEEEcH
Confidence 887654 33333333 32 22 35666655554445533333343323333 34445544
No 123
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=34.61 E-value=1.9e+02 Score=23.71 Aligned_cols=139 Identities=14% Similarity=0.021 Sum_probs=69.2
Q ss_pred CccEEEEEcCCCc--HHHHHH--HHHCCCCcee-ccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEE
Q 015464 118 TKVRVAYQGLPGA--YSEAAA--RKAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHI 192 (406)
Q Consensus 118 ~~~~Va~lGp~Gs--~s~~AA--~~~f~~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I 192 (406)
+..+|++...-+. +....+ ++.++++++. ...+..++.+.+.+|++|+|++.-.....+... ..|.+..+.+
T Consensus 5 g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~l~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~ 81 (209)
T 2ql3_A 5 GPIAVGCYPALGPTILPSMLYAFTAEYPRASVEFREDTQNRLRTQLEGGELDVAIVYDLDLSPEWQT---VPLMTREPMV 81 (209)
T ss_dssp EEEEEEECGGGTTTTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSCSEEEEESSSCCTTEEE---EEEEEECCEE
T ss_pred eeEEEeechhhhhhhHHHHHHHHHHHCCCceEEEEECcHHHHHHHHHcCCccEEEEecCCCCCCceE---EEeecCceEE
Confidence 3456776543332 222222 2346766543 445678899999999999999864321111111 1122222222
Q ss_pred EEEEEEeeeeEeecCC-CCCccCc---cEEEechHHH-HHHHHHHhhcCC--e-EEeccCHHHHHHHHHhcCCCCeEEEc
Q 015464 193 VGEVQLVVNHCLLGLP-GVLKEEL---KRVFSHPQAL-AQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGAVA 264 (406)
Q Consensus 193 ~gE~~l~I~h~L~~~~-g~~l~~I---~~VySHpqal-~QC~~~L~~~~~--~-~i~~~sTA~Aa~~v~~~~~~~~AAIa 264 (406)
..+-.|-|...+ ..+++++ .-|...+... .+..+|+.+.+. . ...++|...+.++|+.+. ..|+.
T Consensus 82 ----v~~~~hpl~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~---Gi~~l 154 (209)
T 2ql3_A 82 ----VLGAEHPLAGVDGPVRLADLAEHPMVLLDAPPSTNHAMDVCREAGFAPRVAYRTANFETARAFVGRGL---GWTLL 154 (209)
T ss_dssp ----EEETTCGGGGCCSCBCGGGGTTSCEEEECCTTHHHHHHHHHHHHTCCCCEEEEESCHHHHHHHHHHTS---CBEEE
T ss_pred ----EEeCCCccccCCCCcCHHHHhCCCEEeeCChhHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcCC---eEEEe
Confidence 223344444333 2344444 3343322222 334556655332 2 456777777778887652 34555
Q ss_pred CH
Q 015464 265 SA 266 (406)
Q Consensus 265 s~ 266 (406)
+.
T Consensus 155 p~ 156 (209)
T 2ql3_A 155 LQ 156 (209)
T ss_dssp SC
T ss_pred eC
Confidence 44
No 124
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=34.54 E-value=42 Score=31.82 Aligned_cols=51 Identities=22% Similarity=0.066 Sum_probs=38.7
Q ss_pred ccEEEEEcCCCcHHHHHHHHHC---C-C---CceeccCCHHHHHHHHHcCCccEEEEee
Q 015464 119 KVRVAYQGLPGAYSEAAARKAY---P-K---CETVPCDQFEAAFKAVELWLVDKAVLPI 170 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f---~-~---~~~~~~~s~~~v~~aV~~g~~d~gvVPI 170 (406)
..+|++ |..|+-++.++..++ | + +..+++.+..+++.++.+|++|.++...
T Consensus 146 gk~v~~-~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 146 GKRVNI-GSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp TSEEEC-CSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEEE
T ss_pred CCEEec-CCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEcc
Confidence 457765 677888887766444 2 2 2357899999999999999999998754
No 125
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=34.35 E-value=1.5e+02 Score=26.36 Aligned_cols=114 Identities=9% Similarity=0.017 Sum_probs=63.6
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC---CccCc--c
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEEL--K 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~---~l~~I--~ 216 (406)
++++... +|.++++++.+|++|+++.++.-+.+- ...+... .-.......++++++. +++|+ +
T Consensus 87 ~~~~~~~-~~~~~~~~l~~G~~D~~~~~~~~~~~r----------~~~~~~s-~p~~~~~~~~~~~~~~~i~~~~dL~g~ 154 (292)
T 1xt8_A 87 KVQFVLV-EAANRVEFLKSNKVDIILANFTQTPQR----------AEQVDFC-SPYMKVALGVAVPKDSNITSVEDLKDK 154 (292)
T ss_dssp CEEEEEC-CGGGHHHHHHTTSCSEECSSCBCCHHH----------HTTEEEC-CCCEEEEEEEEEETTCCCCSSGGGTTS
T ss_pred eEEEEEc-CHHHHHHHHhCCCeeEEeecCCCCcch----------hcceeee-ccceecceEEEEECCCCCCCHHHhCCC
Confidence 5566666 488999999999999885333211110 0011110 1122233455555542 34444 2
Q ss_pred EEEechHHHHHHHHHHhh--cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 ~VySHpqal~QC~~~L~~--~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|..-. .-.. ..++.+ ++...+.+.|..++.+.+..+. -.|++.+...+..
T Consensus 155 ~i~~~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~--vDa~~~~~~~~~~ 207 (292)
T 1xt8_A 155 TLLLNK-GTTA-DAYFTQNYPNIKTLKYDQNTETFAALMDKR--GDALSHDNTLLFA 207 (292)
T ss_dssp EEEEET-TSHH-HHHHHHHCTTSEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred EEEEeC-CCcH-HHHHHHhCCCceEEEcCCHHHHHHHHHcCC--ccEEEecHHHHHH
Confidence 454422 2221 334544 3677888899999999998753 4577777665544
No 126
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=33.59 E-value=88 Score=27.04 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=27.6
Q ss_pred eEEEEE-EeCCCcchHHHHHHHHHhCCceeeeeE
Q 015464 308 KTSIVF-TLEEGPGMLFKALAVFALRDINLTKIE 340 (406)
Q Consensus 308 ktsi~f-~~~~~pGaL~~~L~~Fa~~~INLtkIE 340 (406)
+.|++- -..+.||.+.++++.++..|||+..|-
T Consensus 97 ~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is 130 (178)
T 2dtj_A 97 KVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS 130 (178)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence 556654 346889999999999999999999985
No 127
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=33.20 E-value=49 Score=29.89 Aligned_cols=51 Identities=22% Similarity=0.083 Sum_probs=38.0
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCCCCceeccCCHHHHHHHHHcCCccEEEEee
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPI 170 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 170 (406)
..++|++. +.|+.++...+.++.+++++.. ++.++..++.+|++|.+++.-
T Consensus 102 kGK~Iav~-~~~s~~~~ll~~~l~~~~~~~~-~~~~~~~al~~G~vDa~~~~~ 152 (280)
T 1zbm_A 102 DGKRIAVP-GRYTTANLLLKLAVEDFEPVEM-PFDRIIQAVLDEEVDAGLLIH 152 (280)
T ss_dssp TTCEEEES-CTTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEECS
T ss_pred CCCEEEec-CCCcHHHHHHHHHhccCceEec-CHHHHHHHHHcCCCCEEEEec
Confidence 44688875 4577777767767776666544 668999999999999987653
No 128
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=32.90 E-value=2.3e+02 Score=26.54 Aligned_cols=112 Identities=12% Similarity=0.115 Sum_probs=64.4
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecc---cccccccccchh-ccCCeEEEEEEEEeeeeEeecCCCC---CccC
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENS---VGGSIHRNYDLL-LRHRLHIVGEVQLVVNHCLLGLPGV---LKEE 214 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS---~~G~V~~t~DlL-~~~~l~I~gE~~l~I~h~L~~~~g~---~l~~ 214 (406)
++++.......+.+.+|.+|++|++++..... ..|.. .+|-= ...++..++.+.- -...|+++++. +++|
T Consensus 67 ~v~v~~~~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~--~f~~~~~~~d~~~v~~~~~-~~~~lvv~~ds~i~sl~D 143 (327)
T 4ddd_A 67 ICSISSTTGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLG--FYEKMLPMDNLRMLASLHK-EYLTIVVKKSSNISVIDD 143 (327)
T ss_dssp EEEEECCCCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCG--GGTTSCCCTTEEEEEEEEE-EEEEEEEETTSSCCSGGG
T ss_pred EEEEEecCcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcC--cccccCCCcchhehhccCC-ccEEEEEECCCCCCCHHH
Confidence 45677778888999999999999999864311 11110 01100 1135666665543 34556666543 3444
Q ss_pred cc--EEEe-chH--HHHHHHHHHhhcCC-----eEEeccCHHHHHHHHHhcC
Q 015464 215 LK--RVFS-HPQ--ALAQCEMTLSNLGI-----VRISADDTAGAAQMVASIG 256 (406)
Q Consensus 215 I~--~VyS-Hpq--al~QC~~~L~~~~~-----~~i~~~sTA~Aa~~v~~~~ 256 (406)
++ +|.- .+- .....+.+++..++ ..+...+.+++...+..+.
T Consensus 144 L~gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~ 195 (327)
T 4ddd_A 144 IKGKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNK 195 (327)
T ss_dssp GTTSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTS
T ss_pred hCCCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCC
Confidence 42 4432 221 12334566666554 3467888899998888753
No 129
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=32.47 E-value=73 Score=28.72 Aligned_cols=114 Identities=9% Similarity=0.025 Sum_probs=65.0
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeec-ccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC---CccCc--
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIEN-SVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEEL-- 215 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIEN-S~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~---~l~~I-- 215 (406)
++++...+ |.++++++.+|++|+++..+.. +.+- ...++ .... +......++++++. +++|+
T Consensus 97 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~t~~r--~~~~~--~~~p-------~~~~~~~l~~~~~~~i~s~~dL~G 164 (283)
T 2yln_A 97 KVEFKETQ-WDSMMAGLKAGRFDVVANQVGLTSPER--QATFD--KSEP-------YSWSGAVLVAHNDSNIKSIADIKG 164 (283)
T ss_dssp EEEEEECC-GGGHHHHHHHTSCSEECSSCCCCSHHH--HHHEE--ECSC-------SEEECEEEEEETTCSCCSGGGCTT
T ss_pred ceEEEECC-HHHHHHHHHCCCcCEEEecCccCChhh--hcceE--eccC-------eeeecEEEEEECCCCCCCHHHhCC
Confidence 56777776 9999999999999998644321 1110 00000 0011 11223455555542 34444
Q ss_pred cEEEechHHHHHHHHHHhhcCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 216 KRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 216 ~~VySHpqal~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
++|..-.- -. -..+|.+.+++++.+.+..++.+.+..+. -.|++.....+..
T Consensus 165 ~~v~v~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g~--vDa~i~~~~~~~~ 216 (283)
T 2yln_A 165 VKTAQSLT-SN-YGEKAKAAGAQLVPVDGLAQSLTLIEQKR--ADATLNDELAVLD 216 (283)
T ss_dssp SEEEECTT-SH-HHHHHHHTTCEEEECSSHHHHHHHHHTTS--CCEEEEEHHHHHH
T ss_pred CEEEEecC-ch-HHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEecHHHHHH
Confidence 24543221 11 22356666788888889999999988753 4577776665543
No 130
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=32.25 E-value=3e+02 Score=25.32 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=65.4
Q ss_pred ccEEEEEc-CCCcHHHHHHHHH---CC-CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhc---cCCe
Q 015464 119 KVRVAYQG-LPGAYSEAAARKA---YP-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---RHRL 190 (406)
Q Consensus 119 ~~~Va~lG-p~Gs~s~~AA~~~---f~-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~---~~~l 190 (406)
..+|++.+ |....-+.+...+ .| .++++.+.++.+.-.|+.+|++|....-.. +.++.+. .+++
T Consensus 4 ~ikVG~~~~p~~~i~~~~~~~l~~~~Gi~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~--------pyl~~~~k~~g~~l 75 (240)
T 3tqw_A 4 MVRVGTIAGPETQLMEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANMFQHL--------PYLKAQIEMRGYKI 75 (240)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHHHCCCEEEEEESCTTSHHHHHHTTSCSEEEEEEH--------HHHHHHHHHHCCCE
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHhcCCeEEEEEeCChHhHHHHHHcCCcCeeccCCH--------HHHHHHHHHCCCCE
Confidence 46889884 3222222222211 24 678999999999999999999999876432 2233332 3467
Q ss_pred EEEEEEEEeeeeEeecCCCCCccCcc---EEE--echHHHHHHHHHHhhcC
Q 015464 191 HIVGEVQLVVNHCLLGLPGVLKEELK---RVF--SHPQALAQCEMTLSNLG 236 (406)
Q Consensus 191 ~I~gE~~l~I~h~L~~~~g~~l~~I~---~Vy--SHpqal~QC~~~L~~~~ 236 (406)
..+|.+.+.- ..|.+.+-.++++++ +|. .-|--.+..-..|.+.|
T Consensus 76 v~v~~~~~~p-~glYS~k~ksl~dL~~Ga~Iaipnd~tn~~RaL~lL~~aG 125 (240)
T 3tqw_A 76 VSIGKTFVYP-MGLYSKKITALTQLKTGAKIAVPSDPSNEARALLLLEKAQ 125 (240)
T ss_dssp EEEEEEEECC-CEEECSSCSSGGGCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEEeeccccc-eEEecCCCCCHHHhcCCCEEEEecCccHHHHHHHHHHHCC
Confidence 7777665543 567776656778887 444 33333344444555544
No 131
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=32.05 E-value=1.3e+02 Score=25.28 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=63.4
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEee-eeEeecCCCC--CccCcc--
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVV-NHCLLGLPGV--LKEELK-- 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I-~h~L~~~~g~--~l~~I~-- 216 (406)
++++.+. +|.+++.++.+|++|+++-++.-+.+. ...+.... -.... ...++++++. ++++++
T Consensus 46 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r----------~~~~~~s~-p~~~~~~~~~~~~~~~~~~~~dL~g~ 113 (229)
T 2y7i_A 46 ECSFTNQ-SFDSLIPSLRFKKFDAVIAGMDMTPKR----------EQQVSFSQ-PYYEGLSAVVVTRKGAYHTFADLKGK 113 (229)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCBCCHHH----------HTTSEECS-CSBCCCCEEEEEETTSCCSTGGGTTC
T ss_pred eEEEEEc-CHHHHHHHHhCCCceEEEecCccCHHH----------hcceeecc-ccccCCcEEEEEeCCCCCCHHHHCCC
Confidence 4566665 899999999999999886332211110 00000000 01122 3344444432 233332
Q ss_pred EEEechHHHHHHHHHHhh--cCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 ~VySHpqal~QC~~~L~~--~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|.... .... ..+|.+ ++...+.+.|..++.+++..+. -.|+|++...+..
T Consensus 114 ~v~~~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~gr--vDa~~~~~~~~~~ 166 (229)
T 2y7i_A 114 KVGLEN-GTTH-QRYLQDKQQAITPVAYDSYLNAFTDLKNNR--LEGVFGDVAAIGK 166 (229)
T ss_dssp EEEEET-TSHH-HHHHHHHCTTSEEEEESCHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred EEEEec-CCcH-HHHHHHhCCCCeEEecCCHHHHHHHHHcCC--cCEEEechHHHHH
Confidence 443322 1112 345655 4678888999999999998753 4578887776654
No 132
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=31.91 E-value=87 Score=26.67 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=62.2
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC----CccCcc-
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~----~l~~I~- 216 (406)
++++... +|.+++.++.+|++|+++-.+.-+.+-. ..++ ....+ ......++++++. ++++++
T Consensus 44 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r~--~~~~--~s~p~-------~~~~~~l~~~~~~~~~~~~~dL~g 111 (239)
T 1lst_A 44 KCTWVAS-DFDALIPSLKAKKIDAIISSLSITDKRQ--QEIA--FSDKL-------YAADSRLIAAKGSPIQPTLESLKG 111 (239)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCBCCHHHH--HHCE--ECSCS-------BCCCEEEEEETTCCCCSSHHHHTT
T ss_pred eEEEEeC-CHHHHHHHHhCCCCCEEEECcCcCHHHh--hcee--ecccc-------eeCceEEEEeCCCCCCCCHHHhCC
Confidence 4667766 8999999999999998864332111100 0000 00011 1122344444432 233332
Q ss_pred -EEEechH-H-HHHHHHHHhhcCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHH
Q 015464 217 -RVFSHPQ-A-LAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAE 270 (406)
Q Consensus 217 -~VySHpq-a-l~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~ 270 (406)
+|....- . .....+++..++...+.+.|..++.+++..+. -.|++++...+.
T Consensus 112 ~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~ 166 (239)
T 1lst_A 112 KHVGVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGR--LDAALQDEVAAS 166 (239)
T ss_dssp CEEEEETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTS--CSEEEEEHHHHH
T ss_pred CEEEEEcCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCC--CCEEEeCcHHHH
Confidence 3433221 1 11122233334788889999999999998753 457888777664
No 133
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=31.90 E-value=28 Score=32.00 Aligned_cols=88 Identities=16% Similarity=0.031 Sum_probs=53.6
Q ss_pred ccEEEEEcCCCcHHHHHHHHHCC----CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhc---cCCeE
Q 015464 119 KVRVAYQGLPGAYSEAAARKAYP----KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---RHRLH 191 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f~----~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~---~~~l~ 191 (406)
..+|++.+...+.-..++..+|. +++++.+.++.+..+|+.+|++|++..-- ...++.+. ..++.
T Consensus 4 ~i~vG~~~~~~~~~~~~~~~~~~~~Gl~ve~~~f~d~~~~n~AL~~G~iD~n~fq~--------~~~l~~~~~~~g~~l~ 75 (241)
T 1xs5_A 4 TVGVGVLSEPHARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQH--------VPHMQQFNQEHNGDLV 75 (241)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEEE--------HHHHHHHHHHHTCCEE
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCeEEEEEcCChHHHHHHHHcCCCCEeccCC--------HHHHHHHHHHCCCCEE
Confidence 46788886543312333444663 47899999999999999999999975421 12233332 24567
Q ss_pred EEEEEEEeeeeEeecCCCCCccCc
Q 015464 192 IVGEVQLVVNHCLLGLPGVLKEEL 215 (406)
Q Consensus 192 I~gE~~l~I~h~L~~~~g~~l~~I 215 (406)
+++.+...- ..+.+.+-.+++|+
T Consensus 76 ~v~~~~~~p-~g~ys~kiksl~dL 98 (241)
T 1xs5_A 76 SVGNVHVEP-LALYSRTYRHVSDF 98 (241)
T ss_dssp EEEEEEECC-CEEECSSCCSGGGC
T ss_pred EEEeecccc-ceeecCCCCChHHc
Confidence 776554322 34555443455666
No 134
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=31.67 E-value=2.1e+02 Score=25.84 Aligned_cols=146 Identities=7% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCccEEEEEcCCCcHHHHH-------HHHHCC-CCceeccCCHHHHHHHHHcCCccEEEEeeeccc---ccccccccchh
Q 015464 117 GTKVRVAYQGLPGAYSEAA-------ARKAYP-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSV---GGSIHRNYDLL 185 (406)
Q Consensus 117 ~~~~~Va~lGp~Gs~s~~A-------A~~~f~-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~---~G~V~~t~DlL 185 (406)
..+.+|++.++.|+|.-.+ .+.+.+ .+++....+..+.+++|.+|++|++++...... .|.....|+-.
T Consensus 18 ~~~i~i~~~~~~g~~~~~~~~la~~~~~~~~g~~v~v~~~~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~ 97 (314)
T 1us5_A 18 QEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGK 97 (314)
T ss_dssp CEEEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTC
T ss_pred CceEEEEeCCCCchhHHHHHHHHHHHHhcCCCceEEEEecCcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCC
Q ss_pred ccCCeEEEEEEEEeeeeEeecCCCCCccCccEEEechHHH--------HHHHHHHhhcCCe-----EEeccCHHHHHHHH
Q 015464 186 LRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQAL--------AQCEMTLSNLGIV-----RISADDTAGAAQMV 252 (406)
Q Consensus 186 ~~~~l~I~gE~~l~I~h~L~~~~g~~l~~I~~VySHpqal--------~QC~~~L~~~~~~-----~i~~~sTA~Aa~~v 252 (406)
...++..++ ....-...|+++++..+.++..+..++-+. .....++++.++. .+...+.+++...+
T Consensus 98 ~~~~~~~v~-~~~~~~~~lvv~~~~~i~sl~dL~g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al 176 (314)
T 1us5_A 98 PVKTIRALA-ALYPEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLM 176 (314)
T ss_dssp CCTTEEEEE-EEEEEEEEEEEETTSSCSSGGGGTTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHH
T ss_pred Cccchhehh-hcCcceEEEEEECCCCCCcHHHhCCCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHH
Q ss_pred HhcCCCCeEEEcC
Q 015464 253 ASIGERDTGAVAS 265 (406)
Q Consensus 253 ~~~~~~~~AAIas 265 (406)
..+. -.+++.+
T Consensus 177 ~~G~--vda~~~~ 187 (314)
T 1us5_A 177 QDKR--ADALFYT 187 (314)
T ss_dssp HTTS--CSEEEEE
T ss_pred HcCC--ccEEEEc
No 135
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=31.52 E-value=42 Score=31.01 Aligned_cols=51 Identities=12% Similarity=-0.061 Sum_probs=38.4
Q ss_pred CccEEEEEcCCCcHHHHHHHHHC---C-CCceeccC-CHHHHHHHHHcCCccEEEEe
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAY---P-KCETVPCD-QFEAAFKAVELWLVDKAVLP 169 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f---~-~~~~~~~~-s~~~v~~aV~~g~~d~gvVP 169 (406)
..++|++- ..|+-++...+.++ | +++++... ++.++..++.+|++|.++++
T Consensus 95 kGK~Iav~-~~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G~vDa~~~~ 150 (283)
T 3hn0_A 95 KEPALYVF-GNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGKVNRAVLG 150 (283)
T ss_dssp CSCCEECS-STTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTSCSEEEEC
T ss_pred CCCEEEec-CCCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcCCCCEEEec
Confidence 44678764 46777776554433 3 67777777 89999999999999999986
No 136
>2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A*
Probab=31.23 E-value=19 Score=31.58 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=22.3
Q ss_pred CCCCchhhhhHHhhhcccchHHHHHhhh
Q 015464 24 LVPNRCGFGLDLRVLNKWECTCVGVLAQ 51 (406)
Q Consensus 24 ~~~~l~~lR~~ID~iD~~~~~l~~Ll~~ 51 (406)
...+|+++|-+||+++.+ |+..|++
T Consensus 93 ~~~dL~~~R~~ld~l~~~---ll~~l~~ 117 (166)
T 2fp1_A 93 EPPDLSASRSAIDSLNNR---MLSQIWS 117 (166)
T ss_dssp SCCCSHHHHHHHHHHHHH---HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH---HHHHHHH
Confidence 345679999999999999 9999999
No 137
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=30.93 E-value=39 Score=31.13 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=37.3
Q ss_pred ccEEEEEcCCCcHHHHHHHHHC---C----CCceeccCCHHHHHHHHHcCCccEEEEe
Q 015464 119 KVRVAYQGLPGAYSEAAARKAY---P----KCETVPCDQFEAAFKAVELWLVDKAVLP 169 (406)
Q Consensus 119 ~~~Va~lGp~Gs~s~~AA~~~f---~----~~~~~~~~s~~~v~~aV~~g~~d~gvVP 169 (406)
..+|++.+ .|+.++...+.++ | ++++++..+..+++.++.+|++|.++++
T Consensus 138 Gk~i~~~~-~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vDa~~~~ 194 (346)
T 3qsl_A 138 GRKIGVTA-PGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQIDAISNT 194 (346)
T ss_dssp TCEEEESS-TTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTSCSEEEEE
T ss_pred CCEEEECC-CCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCCccEEEec
Confidence 35788754 5766665554433 3 3677888888999999999999999985
No 138
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=30.20 E-value=3.2e+02 Score=25.03 Aligned_cols=132 Identities=13% Similarity=0.069 Sum_probs=73.8
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCCC---ccCcc--
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVL---KEELK-- 216 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~~---l~~I~-- 216 (406)
+|+..+. +-..+++++.+|++|+..--.-+.+... .++.. +.++...+...-.-...|+.++... ++|++
T Consensus 45 ~Ve~~~~-~~~~~~~AL~~G~iD~~~e~w~~~~~~~---~~~~~-~~~l~~l~~~~~~~~~~l~V~~~~~i~sisDL~~~ 119 (280)
T 3tmg_A 45 NAEIFSV-TTSIMYQYLASGKIDGTVSSWVPTADKF---YYEKL-KTKFVDLGANYEGTIQGFVVPSYVPISSISELKGK 119 (280)
T ss_dssp EEEEEEC-CHHHHHHHHHTTSSSEEEEEEETTTTHH---HHHHH-GGGEEEEEEEEEEEEEEEEEETTSCCCBGGGGTTC
T ss_pred ceEEEEC-CcHHHHHHHHCCCCcEEEeccCCcccHH---HHHHh-cCcEEEccccCCCceEEEEECCCCCCCCHHHHHhh
Confidence 5677665 4578899999999999875443332222 22222 2367777776655567788776543 44553
Q ss_pred ------EEEechHHHH---HHHHHHhhcCC----eEEeccCHHH---HHHHHHhcCCCCeE-EEcCHHhHHHcCCceeec
Q 015464 217 ------RVFSHPQALA---QCEMTLSNLGI----VRISADDTAG---AAQMVASIGERDTG-AVASAQAAEIYGLDILAE 279 (406)
Q Consensus 217 ------~VySHpqal~---QC~~~L~~~~~----~~i~~~sTA~---Aa~~v~~~~~~~~A-AIas~~aA~~ygL~il~~ 279 (406)
+++.-|.... .....++.++. +.+. .|.+. +.+.+.+.+....+ +=.+...-..|+|.+|+.
T Consensus 120 ~~~f~~~~~g~~~G~~~~~~~~~~l~~yGL~~~~~~v~-~s~~~m~~~l~~A~~~g~~~v~~~w~p~~~~~~~~l~~LeD 198 (280)
T 3tmg_A 120 GDKFKNKMIGIDAGAGTQIVTEQALNYYGLSKEYELVP-SSESVMLASLDSSIKRNEWILVPLWKPHWAFSRYDIKFLDD 198 (280)
T ss_dssp GGGGTTEEECCSTTCHHHHHHHHHHHHTTCTTTSEEEC-CCHHHHHHHHHHHHHTTCCCCEEEEESCTHHHHSCEEECBC
T ss_pred HHHcCCeEEecCCCchhHHHHHHHHHhcCCCCceEEEe-CCHHHHHHHHHHHHHCCCCEEEEEecCchhhhcCCeEEecC
Confidence 3455444332 22345555554 3332 33321 22233333344443 345666667899999985
No 139
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=30.08 E-value=36 Score=29.17 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=26.3
Q ss_pred eEEEEE-EeCCCcchHHHHHHHHHhCCceeeeeE
Q 015464 308 KTSIVF-TLEEGPGMLFKALAVFALRDINLTKIE 340 (406)
Q Consensus 308 ktsi~f-~~~~~pGaL~~~L~~Fa~~~INLtkIE 340 (406)
+.+++= ...+.||.+.++++.|+.+|||+..|-
T Consensus 105 ~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 105 KVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 444443 235689999999999999999999985
No 140
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=29.50 E-value=1.3e+02 Score=23.31 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=63.6
Q ss_pred EEechHHHHHHHHHHhhcCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecCccCCCCCeeEEEEEecC
Q 015464 218 VFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILARE 297 (406)
Q Consensus 218 VySHpqal~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~d~~~N~TRF~vi~~~ 297 (406)
|=.++......+.+|...+..+..+.|..+|.+.+.+.. ....|.........|+.++..=-++.....+.+++++..
T Consensus 13 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 13 VDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECT
T ss_pred EcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECC
Confidence 345677778888888887888888888888888887642 345555433333444444433222223345889999876
Q ss_pred CCCCCCCC--CceEEEEEEeCCCcchHHHHHHHHH
Q 015464 298 PIIAGTDR--PYKTSIVFTLEEGPGMLFKALAVFA 330 (406)
Q Consensus 298 ~~~~~~~~--~~ktsi~f~~~~~pGaL~~~L~~Fa 330 (406)
........ ..-..-++.-+-.+..|...|...-
T Consensus 91 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 91 NAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp TCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 43211111 1123334444555667777666543
No 141
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=28.38 E-value=53 Score=28.63 Aligned_cols=113 Identities=7% Similarity=-0.081 Sum_probs=62.5
Q ss_pred CceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCC-----CccCcc-
Q 015464 143 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV-----LKEELK- 216 (406)
Q Consensus 143 ~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~-----~l~~I~- 216 (406)
+++... +|.+++.++.+|++|+++-++..+.+-. ..++ ....+ ......++++++. ++++++
T Consensus 54 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r~--~~~~--~s~p~-------~~~~~~~~~~~~~~~~i~~~~dL~~ 121 (257)
T 2q88_A 54 VVASIS-EYGAMIPGLQAGRHDAITAGLFMKPERC--AAVA--YSQPI-------LCDAEAFALKKGNPLGLKSYKDIAD 121 (257)
T ss_dssp EEEEEC-CGGGHHHHHHTTSCSEECSCCBCCHHHH--TTSE--ECSCC-------CEECEEEEEETTCTTCCCBHHHHHH
T ss_pred eeEEeC-CHHHHHHHHHCCCcCEEEecccCCHHHH--hccc--cccch-------hcCceEEEEECCCccCCCCHHHHhc
Confidence 666665 5999999999999998864433221100 0000 00111 1223445555442 233433
Q ss_pred ----EEEechHHHHHHHHHHhhc---CCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 217 ----RVFSHPQALAQCEMTLSNL---GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 217 ----~VySHpqal~QC~~~L~~~---~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+|....- ... ..+|.+. ..+.+.+.|..++.+++..+. -.|+|++...+..
T Consensus 122 ~~g~~i~~~~g-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~gr--vDa~i~~~~~~~~ 179 (257)
T 2q88_A 122 NPDAKIGAPGG-GTE-EKLALEAGVPRDRVIVVPDGQSGLKMLQDGR--IDVYSLPVLSIND 179 (257)
T ss_dssp CTTCCEEECTT-SHH-HHHHHHTTCCGGGEEECSSHHHHHHHHHHTS--CSEEEEEHHHHHH
T ss_pred cCCceEEEECC-ccc-HHHHHhcCCCCceEEEcCCHHHHHHHHHcCC--CcEEEcCHHHHHH
Confidence 3433221 112 2456553 346788899999999998763 4577777766554
No 142
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=28.17 E-value=1.7e+02 Score=29.48 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=71.8
Q ss_pred CCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHh---HHHcCCceeecCccCCCCCeeEEEEEecCCCC-C---CCC----
Q 015464 236 GIVRISADDTAGAAQMVASIGERDTGAVASAQA---AEIYGLDILAEKIQDDDDNVTRFLILAREPII-A---GTD---- 304 (406)
Q Consensus 236 ~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~a---A~~ygL~il~~~I~d~~~N~TRF~vi~~~~~~-~---~~~---- 304 (406)
+++.+..-|..++.+++..+ |-+-...| |..+|.++.-.|..+...-=|.|. ..... + .-.
T Consensus 223 ~a~~i~~is~~e~~ela~~G-----a~vl~~~a~~~a~~~~ipi~i~~~~~p~~~GT~i~---~~~~~~~~~~~v~gIa~ 294 (446)
T 3tvi_A 223 NPKTISKISYKELRELSYMG-----ATVLHEEAIFPVKDSGIPINIKNTNKPSDPGTLIL---SDTHKEINLGTITGIAG 294 (446)
T ss_dssp SCCBCSEEEHHHHHHTTTC---------CCSTTTHHHHHSSCCEEEEETTBTTSCCEEEE---CTTTSCCCTTCCCEEEE
T ss_pred CCeEcceeCHHHHHHHHhCC-----CCcchHHHHHHHHHcCCeEEEecCCCCCCCCEEEe---cCCcccccCcceEEEEe
Confidence 34555555556666654321 11223333 456899998888765444447663 22111 1 101
Q ss_pred CCceEEEEEE---eCCCcchHHHHHHHHHhCCceeeeeEeeeCCCCCCccccCCCCCCCccceEEEEEEEecCCCcHHHH
Q 015464 305 RPYKTSIVFT---LEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQ 381 (406)
Q Consensus 305 ~~~ktsi~f~---~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~g~~~~~~Y~Ffid~e~~~~~~~~~ 381 (406)
..+-+.|.+. ..+.||.+.++++.|+++|||.-.|.+-. -+..|.|+-+.-. ...+
T Consensus 295 ~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~~-------------------~~is~~V~~~d~~--~~~~ 353 (446)
T 3tvi_A 295 KKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSGV-------------------DSVSLVIEDCKLD--GKCD 353 (446)
T ss_dssp EEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEET-------------------TEEEEEEEHHHHT--TTHH
T ss_pred cCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecCC-------------------CEEEEEEecchHH--HHHH
Confidence 1122333333 24789999999999999999999885421 2567888754211 1456
Q ss_pred HHHHHHHHcC
Q 015464 382 FALGHLQEFA 391 (406)
Q Consensus 382 ~al~~L~~~~ 391 (406)
.++++|+...
T Consensus 354 ~~~~el~~~~ 363 (446)
T 3tvi_A 354 KIIEEIKKQC 363 (446)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 7788887654
No 143
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=27.46 E-value=1.3e+02 Score=28.18 Aligned_cols=87 Identities=13% Similarity=-0.002 Sum_probs=52.0
Q ss_pred CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhc-cCCeEEEEEEEEeeeeEeecCCCC----CccCc-
Q 015464 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-RHRLHIVGEVQLVVNHCLLGLPGV----LKEEL- 215 (406)
Q Consensus 142 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~-~~~l~I~gE~~l~I~h~L~~~~g~----~l~~I- 215 (406)
+++++...+..++.++|..|++|+|+......+ .... ..++.+++-+.-.-...++..++. ++++.
T Consensus 39 dVei~~~~~~~~~~~al~sG~~D~g~~~~~~~~--------~a~~~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~dLk 110 (342)
T 4esw_A 39 DIAILEPSNPSDVTELVGSGKVDMGLKAMVGTL--------AAKARGFPVTSIGSLLDEPFTGICYLEGSGITSDFQSLK 110 (342)
T ss_dssp EEEEEEESSGGGHHHHHHHTSSSEEEEEHHHHH--------HHHHTTCCEEEEEEEECSCCEEEEEETTSSCCSSGGGGT
T ss_pred eEEEEeCCChHHHHHHHHcCCcCEEEecHHHHH--------HHHHCCCCeEEEEEeccCCcccccccccccccCCHHHhC
Confidence 578899999999999999999999986543221 1111 235666665544333455554331 23444
Q ss_pred -cEEEe-chHHHHHHHHHHhhcC
Q 015464 216 -KRVFS-HPQALAQCEMTLSNLG 236 (406)
Q Consensus 216 -~~VyS-Hpqal~QC~~~L~~~~ 236 (406)
|+|.. ..-.....+.+|++.|
T Consensus 111 GK~ig~~~~~~~~~l~~~L~~~G 133 (342)
T 4esw_A 111 GKRIGYVGEFGKIQVDELTKHYG 133 (342)
T ss_dssp TCEEEESSSHHHHHHHHHHGGGT
T ss_pred CCEEEecCCchHHHHHHHHHHcC
Confidence 24432 2233456677887744
No 144
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=27.43 E-value=51 Score=25.43 Aligned_cols=58 Identities=16% Similarity=0.057 Sum_probs=37.6
Q ss_pred EEechHHHHHHHHHHhhcCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCcee
Q 015464 218 VFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDIL 277 (406)
Q Consensus 218 VySHpqal~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ygL~il 277 (406)
|-.++......+.+|.+.+..+..+.|..+|.+.+.+.. ++ ..|.........|+.++
T Consensus 12 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~d-lii~d~~l~~~~g~~~~ 69 (132)
T 3lte_A 12 VDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE-PA-IMTLDLSMPKLDGLDVI 69 (132)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC-CS-EEEEESCBTTBCHHHHH
T ss_pred EECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC-CC-EEEEecCCCCCCHHHHH
Confidence 445777778888899888888888888888888887642 33 44443333333344433
No 145
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=27.11 E-value=2.5e+02 Score=25.28 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCccEEEEeeecccccccccccchhccCCe-EEEEEEEE---eeeeEeecCCCCC-ccC--ccEEEechH
Q 015464 151 FEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRL-HIVGEVQL---VVNHCLLGLPGVL-KEE--LKRVFSHPQ 223 (406)
Q Consensus 151 ~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l-~I~gE~~l---~I~h~L~~~~g~~-l~~--I~~VySHpq 223 (406)
..|+..-|+.|.+|+||+=- |.|.+++. .+.--..| +.+.+++++++.. .++ =++|.+-..
T Consensus 51 ~~DIp~yV~~G~~DlGItG~------------D~l~E~~~~~v~el~dLgfG~crl~vAvp~~~~~~~~~~~~RIATkyp 118 (208)
T 1z7m_E 51 PNDVITFLEHGIVDIGFVGK------------DTLDENDFDDYYELLYLKIGQCIFALASYPDFSNKNFQRHKRIASKYP 118 (208)
T ss_dssp HHHHHHHHHTTSCSEEEEEH------------HHHHHSSCCCEEEEEEETTCCCEEEEEECGGGGGCCCSSCEEEEESCH
T ss_pred chhHHHHHhCCCccEEEeee------------eeeeecCCCCeEEeeccccCCEEEEEEEECCCccchhcCCCEEEECch
Confidence 46999999999999999843 33333322 12222233 2334555554311 222 246666555
Q ss_pred HHHHHHHHHhhcCC--eEEeccCHHHHHHHHHhcCCCC-eEEE-cCHHhHHHcCCceee
Q 015464 224 ALAQCEMTLSNLGI--VRISADDTAGAAQMVASIGERD-TGAV-ASAQAAEIYGLDILA 278 (406)
Q Consensus 224 al~QC~~~L~~~~~--~~i~~~sTA~Aa~~v~~~~~~~-~AAI-as~~aA~~ygL~il~ 278 (406)
-+ .++|+++.++ +.+..+..-++|=.+ +..+ .+=| .+-..-+.+||++++
T Consensus 119 ~l--~~~yf~~~gi~~~ii~l~GsvE~ap~~---GlAD~IvDivsTG~TLr~NgL~~ie 172 (208)
T 1z7m_E 119 RV--TKKYFAQKQEDIEIIKLEGSVELGPVV---GLADAIVDIVETGNTLSANGLEVIE 172 (208)
T ss_dssp HH--HHHHHHHTTCCEEEEECSSCTTHHHHT---TSCSEEEEEESSSHHHHTTTCEEEE
T ss_pred HH--HHHHHHHcCCceEEEECCCceeeccCC---CcccEEEEEeCChHHHHHCCCEEeE
Confidence 44 4789988654 455555444444322 1122 1223 466677899999985
No 146
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=26.76 E-value=39 Score=28.89 Aligned_cols=34 Identities=29% Similarity=0.239 Sum_probs=27.8
Q ss_pred ceEEEEE-EeCCCcchHHHHHHHHHhCCceeeeeE
Q 015464 307 YKTSIVF-TLEEGPGMLFKALAVFALRDINLTKIE 340 (406)
Q Consensus 307 ~ktsi~f-~~~~~pGaL~~~L~~Fa~~~INLtkIE 340 (406)
.|.|++- -..+.||.+.++++.++..|||+..|-
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 3666665 346789999999999999999997774
No 147
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=26.22 E-value=40 Score=31.86 Aligned_cols=88 Identities=9% Similarity=-0.025 Sum_probs=53.6
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCC----CCceeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchhc----cCC
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYP----KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL----RHR 189 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~----~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~----~~~ 189 (406)
...+|++.+|.... ..++..+|. +++++.+.++.+..+|+.+|++|++..-- ...++.+. ..+
T Consensus 39 ~~i~IG~~~~~~~~-~~~~~~~~~~~G~~Ve~~~f~~~~~~~~AL~~G~iD~~~~~~--------~~~l~~~~~~~~g~~ 109 (295)
T 1p99_A 39 KKVTIGVASNDTKA-WEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQH--------FAFLDQYKKAHKGTK 109 (295)
T ss_dssp -CEEEEESSSCCHH-HHHHHHHHGGGTCCEEEEECSSTTSHHHHHHTTSSSEEEEEE--------HHHHHHHHHHCTTCC
T ss_pred CeEEEEEeCCcHHH-HHHHHHHHHHcCCeEEEEEeCChHHHHHHHHcCCCCEEccCC--------HHHHHHHHHhcCCCC
Confidence 35789998555433 333445663 57899999999999999999999987421 11223222 245
Q ss_pred eEEEEEEEEeeeeEeecCCCCCccCc
Q 015464 190 LHIVGEVQLVVNHCLLGLPGVLKEEL 215 (406)
Q Consensus 190 l~I~gE~~l~I~h~L~~~~g~~l~~I 215 (406)
+.+++.+...- ..+.+.+-.+++|+
T Consensus 110 l~~v~~~~~~p-~g~ys~~iksl~DL 134 (295)
T 1p99_A 110 ISALSTTVLAP-LGIYSDKIKDVKKV 134 (295)
T ss_dssp EEEEEEEEECC-CEEECSSCSCGGGC
T ss_pred EEEEEeecccc-ceeecCCCCChHHc
Confidence 77777654321 34444332345566
No 148
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=24.82 E-value=1.2e+02 Score=27.71 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=72.3
Q ss_pred CCceec-cCCHHHHHHHHHcCCccEEEEeeec---ccccc--c-----ccccchhc-----cCCeEEEEEEEEeeeeEee
Q 015464 142 KCETVP-CDQFEAAFKAVELWLVDKAVLPIEN---SVGGS--I-----HRNYDLLL-----RHRLHIVGEVQLVVNHCLL 205 (406)
Q Consensus 142 ~~~~~~-~~s~~~v~~aV~~g~~d~gvVPIEN---S~~G~--V-----~~t~DlL~-----~~~l~I~gE~~l~I~h~L~ 205 (406)
++++.+ ..+....++++.+|++|+++-=.-+ ...+. . ...++.+. +.++.+.+-....-.+.|+
T Consensus 35 ~Ve~~~~~g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 114 (275)
T 1sw5_A 35 KAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALA 114 (275)
T ss_dssp CEEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEE
T ss_pred cEEEEeCCCchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeEEeccCCCCCeeEEE
Confidence 567776 6678999999999999998520000 00110 0 11223222 2478888887655567777
Q ss_pred cCC------CC-CccCcc------EEEechHHHH---HHHHHHhhcCC--eEEeccCHHHHHHHHHhcCCCCeEEEc-CH
Q 015464 206 GLP------GV-LKEELK------RVFSHPQALA---QCEMTLSNLGI--VRISADDTAGAAQMVASIGERDTGAVA-SA 266 (406)
Q Consensus 206 ~~~------g~-~l~~I~------~VySHpqal~---QC~~~L~~~~~--~~i~~~sTA~Aa~~v~~~~~~~~AAIa-s~ 266 (406)
+++ +. +++|++ .+-+-+.-.. .-..+++..+. +.+...+.+.+.+.+.++ ..+.+.+- +.
T Consensus 115 V~~~~a~~~~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~~~~~~~~Al~~g-~vd~~~~~~p~ 193 (275)
T 1sw5_A 115 VRADWAEENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEPTLMYEAIKNK-QVDVIPAYTTD 193 (275)
T ss_dssp EEHHHHHHHTCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEECCGGGHHHHHHTT-SCSEEEEETTC
T ss_pred EeHHHHHHcCCCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCCCHHHHHHHHHcC-CCeEEEEeCCC
Confidence 764 22 344443 2222222110 11225555443 233333555555555554 45555553 33
Q ss_pred HhHHHcCCceeecC
Q 015464 267 QAAEIYGLDILAEK 280 (406)
Q Consensus 267 ~aA~~ygL~il~~~ 280 (406)
.....|+|.+|..+
T Consensus 194 ~~~~~~~l~~L~d~ 207 (275)
T 1sw5_A 194 SRVDLFNLKILEDD 207 (275)
T ss_dssp HHHHHTTEEECBCT
T ss_pred cchhcCCeEEccCC
Confidence 33456899998865
No 149
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=24.33 E-value=3.7e+02 Score=23.75 Aligned_cols=122 Identities=16% Similarity=0.064 Sum_probs=59.4
Q ss_pred HCCCCceecc-CCHHHHHHHHHcCCccEEEEe---eecccccccccccchhccCCeEEEEEEEEeeeeEeecCCCCCccC
Q 015464 139 AYPKCETVPC-DQFEAAFKAVELWLVDKAVLP---IENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEE 214 (406)
Q Consensus 139 ~f~~~~~~~~-~s~~~v~~aV~~g~~d~gvVP---IENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~~l~~ 214 (406)
.++++.+... .+..++.+.+.+|++|+|++. -.....+... ..|.+..+.++ .+-.|-+. ....++++
T Consensus 126 ~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~l~~---~~l~~~~~~~v----~~~~~pl~-~~~i~~~d 197 (310)
T 2esn_A 126 SAPGVRLRLVNAERKLSVEALASGRIDFALGYDEEHERLPEGIQA---HDWFADRYVVV----ARRDHPRL-AGAPTLEG 197 (310)
T ss_dssp HSTTCEEEEECCSSSCCHHHHHHTSSSEEEECCSTTCCCCTTEEE---EEEEEECEEEE----EESSCTTC-SSSCCHHH
T ss_pred HCCCeEEEEEeCCcccHHHHHHcCCCCEEEecCcccccCCcCcce---eeeeccceEEE----EeCCCCCc-CCCCCHHH
Confidence 3576654332 333567888999999999986 2211111100 01111122221 12223222 11223333
Q ss_pred c---cEEEechH-H-HHHHHHHHhhcCC--e-EEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015464 215 L---KRVFSHPQ-A-LAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (406)
Q Consensus 215 I---~~VySHpq-a-l~QC~~~L~~~~~--~-~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ 271 (406)
+ .-|.-.+. . -.....|+...+. . .+.++|...+.+.|..+ ...|+.+...++.
T Consensus 198 L~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gia~lp~~~~~~ 259 (310)
T 2esn_A 198 YLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGST---DFLLTAPRHAARA 259 (310)
T ss_dssp HHTSEEEEECTTCCSSCHHHHHHHHTTCCCEEEEEESCHHHHHHHHHTS---SCEEEEEHHHHHH
T ss_pred HhcCCcEEEeCCCCcccHHHHHHHhCCCCeeEEEeCCCHHHHHHHHhcC---CeEEEcHHHHHHH
Confidence 3 23433221 1 1345566766443 3 35677777777777764 3467777776653
No 150
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=23.90 E-value=4.2e+02 Score=24.17 Aligned_cols=130 Identities=15% Similarity=0.009 Sum_probs=69.7
Q ss_pred CccEEEEEcCCCcHHHHHHHH--HC---C-CCceeccCCHH-HHHHHHHcCCccEEEEeeecccccccccccchh-ccCC
Q 015464 118 TKVRVAYQGLPGAYSEAAARK--AY---P-KCETVPCDQFE-AAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL-LRHR 189 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~--~f---~-~~~~~~~~s~~-~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL-~~~~ 189 (406)
...+|++....+...-..|.. +| | +++++...+.. ...++|.+|++|+++......+ ... ...+
T Consensus 15 ~~l~ig~~~~~~~~p~~~A~~~G~~~~~Gl~V~~~~~~~g~~~~~~al~~G~~D~~~~~~~~~~--------~~~~~g~~ 86 (321)
T 2x7q_A 15 PTLKVAYIPEHFSTPLFFAQQQGYYKAHDLSIEFVKVPEGSGRLINLLNSNEVDIAIGLTEAFI--------ADIAKGNE 86 (321)
T ss_dssp CCEEEEECCSGGGHHHHHHHHTTHHHHTTCCEEEEECTTCHHHHHHHHHTTSCSEEEEEHHHHH--------HHHHTTCT
T ss_pred ceEEEEeeCCccchHHHHHHHCCcHHHCCceEEEEECCCCHHHHHHHHHcCCccEEecCcHHHH--------HHHHCCCC
Confidence 456888874333222222332 44 3 46777766644 5799999999999987543111 111 1224
Q ss_pred -eEEEEEEEE-eeeeEeecCCCC----CccCccEEEech-HHH-HHHHHHH-hhcC----CeEEeccCHHHHHHHHHhc
Q 015464 190 -LHIVGEVQL-VVNHCLLGLPGV----LKEELKRVFSHP-QAL-AQCEMTL-SNLG----IVRISADDTAGAAQMVASI 255 (406)
Q Consensus 190 -l~I~gE~~l-~I~h~L~~~~g~----~l~~I~~VySHp-qal-~QC~~~L-~~~~----~~~i~~~sTA~Aa~~v~~~ 255 (406)
+.+++-+.- |....++++++. +++|+|+|.... -.- .....++ ++.+ ++.+.+.+.+++...+..+
T Consensus 87 ~~~~v~~~~~~~~~~~i~v~~ds~~i~s~~DLK~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G 165 (321)
T 2x7q_A 87 NIHVLDTYVKSPLLWAVSTGSNRDDVTDAKQLKRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLK 165 (321)
T ss_dssp TEEEEEEEECSCCEEEEEEESSCTTCSSGGGCCEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTC
T ss_pred cEEEEEEecCCCcceEEEECCCCCCCCChHHcceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcC
Confidence 777665442 222356654332 345557776653 111 1223344 3434 3566776777777777664
No 151
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=23.71 E-value=80 Score=29.61 Aligned_cols=49 Identities=16% Similarity=-0.004 Sum_probs=35.0
Q ss_pred CccEEEEEcCCCcHHHHHHHHHC---C----CCceeccCCHHHHHHHHHcCCccEEEEe
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAY---P----KCETVPCDQFEAAFKAVELWLVDKAVLP 169 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f---~----~~~~~~~~s~~~v~~aV~~g~~d~gvVP 169 (406)
...+|++ +.|+.++...+.++ | ++++++. ++.+++.++.+|++|.++++
T Consensus 118 kGk~I~v--~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 173 (348)
T 3uif_A 118 KGKKIAL--HRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGTVDGFFSL 173 (348)
T ss_dssp TTSEEEE--CTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTSSSEEEES
T ss_pred CCCEEEe--cCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCCCCEEEec
Confidence 3468887 46777766655443 3 2455554 68899999999999998775
No 152
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.46 E-value=49 Score=25.96 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=49.3
Q ss_pred EEechHHHHHHHHHHhhcCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecCccCCCCCeeEEEEEecC
Q 015464 218 VFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILARE 297 (406)
Q Consensus 218 VySHpqal~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~d~~~N~TRF~vi~~~ 297 (406)
|=.++......+.+|.+.+..+..+.|..+|.+.+.+.. + ...|.........|+.++..=-++.....+.+++++..
T Consensus 12 vdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~-~-dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 12 CEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP-Y-AAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC-C-SEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTT
T ss_pred EcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC-C-CEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecC
Confidence 345677778888999888888888888888888887653 3 34555443334445554433212123345788888754
No 153
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=23.38 E-value=1.7e+02 Score=25.36 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=48.2
Q ss_pred CccEEEEEcCCCcHHHHHHHHH---CC-CCc-eeccCCHHHHHHHHHcCCccEEEEeeecccccccccccchh-cc--CC
Q 015464 118 TKVRVAYQGLPGAYSEAAARKA---YP-KCE-TVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL-LR--HR 189 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~---f~-~~~-~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL-~~--~~ 189 (406)
...+|+++ .|+..+.....+ .+ ... .....+..+++++|..|++|..+.. .. +++.+ .+ ..
T Consensus 117 ~g~~v~v~--~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~---~~------~~~~~~~~~~~~ 185 (243)
T 4gvo_A 117 AGKRVITS--ATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATIST---PF------AVDFQNKTSAIK 185 (243)
T ss_dssp TTCEEEEC--TTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEEC---HH------HHHHHHHTCSSC
T ss_pred cCCeEEEe--cCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEcc---HH------HHHHHHhhCCCc
Confidence 34678876 465555444322 22 333 4567888999999999999976542 11 11212 22 24
Q ss_pred eEEEEEEEEeeeeEeecCCC
Q 015464 190 LHIVGEVQLVVNHCLLGLPG 209 (406)
Q Consensus 190 l~I~gE~~l~I~h~L~~~~g 209 (406)
+.++++..-+...+++.+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~k~ 205 (243)
T 4gvo_A 186 EKVVGDVLSNAKVYFMLGKD 205 (243)
T ss_dssp EEEEEEEEECCEECCEECTT
T ss_pred eEEeccCCCCCcEEEEEeCC
Confidence 67777776666666665554
No 154
>3mst_A Putative nitrate transport protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.35A {Thermoplasma volcanium}
Probab=23.26 E-value=87 Score=29.11 Aligned_cols=51 Identities=16% Similarity=0.083 Sum_probs=39.3
Q ss_pred CccEEEEEcCCCcHHHHHHHHHCC--CCceeccCCHHHHHHHHHcCCccEEEEeeec
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAYP--KCETVPCDQFEAAFKAVELWLVDKAVLPIEN 172 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f~--~~~~~~~~s~~~v~~aV~~g~~d~gvVPIEN 172 (406)
-..+|++. ++||-.+.-+|.+.. +.+++.. +|.++++++.+|+ .++|..+-
T Consensus 88 ~GkkIgvw-rkGSaaDVl~R~ll~~~g~eVvy~-Dw~di~~ml~~Ge--sAVva~~~ 140 (244)
T 3mst_A 88 SSGRIYTL-RKGTLADFNARILAYYDKAQVINA-DGDTCIKMANEGY--SALVGNEI 140 (244)
T ss_dssp TSSEEEES-STTSHHHHHHHHHHHHHTCEEEEC-CHHHHHHHHHTTC--EEEEETTT
T ss_pred CCCeEecc-CCCcHHHHHHHHHHHHhCCeEEEC-CHHHHHHHHhCCC--cEEEeecc
Confidence 35678775 679887766665442 2778888 9999999999999 88888775
No 155
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=23.20 E-value=80 Score=24.82 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=50.7
Q ss_pred EEechHHHHHHHHHHhhcCCe--EEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecCccCCCCCeeEEEEEe
Q 015464 218 VFSHPQALAQCEMTLSNLGIV--RISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILA 295 (406)
Q Consensus 218 VySHpqal~QC~~~L~~~~~~--~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~d~~~N~TRF~vi~ 295 (406)
|-.++......+.+|.+.+.. +..+.|..+|.+.+.+. .+ ...|.........|+.++..=-+......+.+++++
T Consensus 11 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~-~~-dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 11 VEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA-KY-DLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC-CC-SEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEE
T ss_pred EeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC-CC-CEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEe
Confidence 345777778888999886655 66788888888887664 23 456665555555666655432222234457888887
Q ss_pred cCC
Q 015464 296 REP 298 (406)
Q Consensus 296 ~~~ 298 (406)
...
T Consensus 89 ~~~ 91 (144)
T 3kht_A 89 DNV 91 (144)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
No 156
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=23.16 E-value=46 Score=25.62 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=48.3
Q ss_pred EechHHHHHHHHHHhhcCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecCccCCCCCeeEEEEEecCC
Q 015464 219 FSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREP 298 (406)
Q Consensus 219 ySHpqal~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~d~~~N~TRF~vi~~~~ 298 (406)
-.++......+.+|.+.+..+..+.|..+|.+.+.+.. ++ ..|.........|+.++..=-+......+.+++++...
T Consensus 10 dd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~d-lii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 10 EDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG-YD-AVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp CSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC-CS-EEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC-CC-EEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCc
Confidence 34677778888899887888888888888888887653 33 44444333334454444332122224567788887654
No 157
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=22.27 E-value=4.1e+02 Score=23.49 Aligned_cols=120 Identities=16% Similarity=0.104 Sum_probs=62.3
Q ss_pred HCCCCceecc-CCHHHHHHHHHcCCccEEEEeeecc--cccccccccchhccCCeEEEEEEEEeeeeEeecCCCCCccCc
Q 015464 139 AYPKCETVPC-DQFEAAFKAVELWLVDKAVLPIENS--VGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEEL 215 (406)
Q Consensus 139 ~f~~~~~~~~-~s~~~v~~aV~~g~~d~gvVPIENS--~~G~V~~t~DlL~~~~l~I~gE~~l~I~h~L~~~~g~~l~~I 215 (406)
.++++++... .+.+++.+.+.+|++|+|+...... ..+... ..|.+..+.++ .+-.|-|... .+++++
T Consensus 117 ~~P~i~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~~~l~~---~~L~~~~~~~v----~~~~hpla~~--~~~~dL 187 (305)
T 3fxq_A 117 EFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDIDTDLEA---QPLYVSDVVIV----GQRQHPMANA--TRLAEL 187 (305)
T ss_dssp HCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGSCTTEEE---EEEEECCEEEE----EETTCTTTTC--CSGGGG
T ss_pred HCCCCEEEEEECCHHHHHHHHHcCCCCEEEecCCCCCCccCeeE---EEeecCcEEEE----EcCCCCCCCC--CCHHHH
Confidence 4677664332 3456788899999999999865422 111111 11122222222 1222322211 123333
Q ss_pred ---cEEE-echHHH-HHHHHHHhhcCC---e-EEeccCHHHHHHHHHhcCCCCeEEEcCHHhHH
Q 015464 216 ---KRVF-SHPQAL-AQCEMTLSNLGI---V-RISADDTAGAAQMVASIGERDTGAVASAQAAE 270 (406)
Q Consensus 216 ---~~Vy-SHpqal-~QC~~~L~~~~~---~-~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~ 270 (406)
.-|. +..... ....+|+.+.+. . ...++|...+..+|+.+ ...|+.+...++
T Consensus 188 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~g---~gia~lp~~~~~ 248 (305)
T 3fxq_A 188 QECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVVAHS---DLLTTMPRTLYE 248 (305)
T ss_dssp TTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHHHTS---SCEEEEEHHHHH
T ss_pred hCCCeEeeCCCCCHHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHhC---CEEEEeeHHHHh
Confidence 3343 322222 456677776544 2 34667777777777765 346777777765
No 158
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=21.95 E-value=4.8e+02 Score=24.18 Aligned_cols=172 Identities=7% Similarity=-0.044 Sum_probs=89.9
Q ss_pred cEEEEEcCCCcHHHHHHHHHC--------CCCceeccCC-----HHHHHHHHHcCCccEEEEeeecc-------------
Q 015464 120 VRVAYQGLPGAYSEAAARKAY--------PKCETVPCDQ-----FEAAFKAVELWLVDKAVLPIENS------------- 173 (406)
Q Consensus 120 ~~Va~lGp~Gs~s~~AA~~~f--------~~~~~~~~~s-----~~~v~~aV~~g~~d~gvVPIENS------------- 173 (406)
.|+++.-++|+..+.++..+- |.+++..+.+ -.+++++|..|.+|++++..-..
T Consensus 5 lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~P~~~~~~lP 84 (312)
T 2xwv_A 5 LKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFALP 84 (312)
T ss_dssp EEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGGGGGTSGGGGGGGST
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHCCCceEEEeCchhhhhhccchhhhcCC
Confidence 567777677766555554321 2344444433 58999999999999998864210
Q ss_pred ------------c-cccccc-ccchh-ccCCeEEEEEEEEeeeeEeecCCCCCccCcc--EEEechHHHHHHHHHHhhcC
Q 015464 174 ------------V-GGSIHR-NYDLL-LRHRLHIVGEVQLVVNHCLLGLPGVLKEELK--RVFSHPQALAQCEMTLSNLG 236 (406)
Q Consensus 174 ------------~-~G~V~~-t~DlL-~~~~l~I~gE~~l~I~h~L~~~~g~~l~~I~--~VySHpqal~QC~~~L~~~~ 236 (406)
. +|.+.. .++.+ .+.++++.+-......+....+|=.+++|++ +|..-+.. -...+++..|
T Consensus 85 fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~~~~~~~pI~s~~DlkGlKiRv~~~~--~~~~~~~alG 162 (312)
T 2xwv_A 85 YVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRVPNAA--TNLAYAKYVG 162 (312)
T ss_dssp TTSCSHHHHHHHHHSSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEESSCCCSGGGGTTCEEEECSCH--HHHHHHHHHT
T ss_pred cccCCHHHHHHHHhcCHHHHHHHHHHHHhCCeEEEEeeccCceeeecCCCcCCHHHhCCCEEEeCCCH--HHHHHHHHcC
Confidence 0 111110 11111 2357888887776665543323323566665 55554422 2356788889
Q ss_pred CeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecCccCCCCCee-EEEEEec
Q 015464 237 IVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVT-RFLILAR 296 (406)
Q Consensus 237 ~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~d~~~N~T-RF~vi~~ 296 (406)
+..++..- ++....+..+ . -.|+..+.......++.=+.+.+......++ -++++++
T Consensus 163 a~pv~m~~-~Evy~ALq~G-~-vDg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 220 (312)
T 2xwv_A 163 ASPTPMAF-SEVYLALQTN-A-VDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSN 220 (312)
T ss_dssp CEEEECCG-GGHHHHHHTT-S-SSEEEEEHHHHHHTTGGGSCSEEECCCCCEEEEEEEEEH
T ss_pred CeeeecCH-HHHHHHHHcC-C-cceEeccHHHHhhcchhhccceEEecCccccceEEEEeH
Confidence 87765432 2222323332 2 2466666555544555433444443333333 3444544
No 159
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=21.50 E-value=52 Score=25.38 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=44.4
Q ss_pred EechHHHHHHHHHHhhcCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecCccCCCCCeeEEEEEec
Q 015464 219 FSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAR 296 (406)
Q Consensus 219 ySHpqal~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~d~~~N~TRF~vi~~ 296 (406)
=.+|......+.+|++.+.+++.+.|..+|.+.+.+. .++ ..|..-..-...|+.++..=-+......+.+++++.
T Consensus 9 dd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~-~~d-lvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 9 DDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEF-TPD-LIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTB-CCS-EEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEES
T ss_pred eCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc-CCC-EEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEec
Confidence 3577777788888988888888888888888887654 233 444433333344444443211111222355565554
No 160
>2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str}
Probab=21.41 E-value=34 Score=29.63 Aligned_cols=27 Identities=7% Similarity=-0.055 Sum_probs=23.6
Q ss_pred CCCchhhhhHHhhhcccchHHHHHhhhhcccc
Q 015464 25 VPNRCGFGLDLRVLNKWECTCVGVLAQTHRAI 56 (406)
Q Consensus 25 ~~~l~~lR~~ID~iD~~~~~l~~Ll~~~~R~~ 56 (406)
+..|+.+|-+||+++.+ |+..|++ .++
T Consensus 90 ~~~l~~~R~~l~~l~~~---ll~~l~~--~l~ 116 (156)
T 2gbb_A 90 PKPLDDVRANIGELSTK---ILEQIAE--ELK 116 (156)
T ss_dssp CCCHHHHHHHHHHHHHH---HHHHHHH--HHH
T ss_pred CCCHHHHHHHHHHHHHH---HHHHHHH--HHH
Confidence 45689999999999999 9999999 554
No 161
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=21.19 E-value=92 Score=23.89 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=46.0
Q ss_pred EEEechHHHHHHHHHHhhcCCeEEeccCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecCccCCCCCeeEEEEEec
Q 015464 217 RVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAR 296 (406)
Q Consensus 217 ~VySHpqal~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~d~~~N~TRF~vi~~ 296 (406)
-|=.++......+.+|.+.+...+.+.|..+|.+.+.+.. + ...|.........|+.++.. +... ...+.+++++.
T Consensus 12 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~-dlvi~d~~l~~~~g~~~~~~-l~~~-~~~~~ii~~t~ 87 (130)
T 3eod_A 12 IVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-P-DLMICDIAMPRMNGLKLLEH-IRNR-GDQTPVLVISA 87 (130)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCC-C-SEEEECCC-----CHHHHHH-HHHT-TCCCCEEEEEC
T ss_pred EEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCC-C-CEEEEecCCCCCCHHHHHHH-HHhc-CCCCCEEEEEc
Confidence 3445677778888899888888888888888888876542 3 45555544445556665543 2211 12456666655
Q ss_pred C
Q 015464 297 E 297 (406)
Q Consensus 297 ~ 297 (406)
.
T Consensus 88 ~ 88 (130)
T 3eod_A 88 T 88 (130)
T ss_dssp C
T ss_pred C
Confidence 4
No 162
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=20.96 E-value=91 Score=32.13 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=29.6
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceeeeeEeeeCCC
Q 015464 311 IVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRK 346 (406)
Q Consensus 311 i~f~~~~~pGaL~~~L~~Fa~~~INLtkIESRP~~~ 346 (406)
+.|..|++||+|.+.|+.+.. +-|+|-..=|-...
T Consensus 436 ~~~~fpe~~gal~~fl~~~~~-~~~i~~~~yr~~g~ 470 (514)
T 1tdj_A 436 YSFEFPESPGALLRFLNTLGT-YWNISLFHYRSHGT 470 (514)
T ss_dssp EEEECCCCTTHHHHHHHHHCS-CCCCCEEECBCTTT
T ss_pred EEEeCCCCCCHHHHHHHhcCC-CceEEEEeecCCCC
Confidence 678999999999999999975 67888888887543
No 163
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=20.88 E-value=1.3e+02 Score=27.66 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=37.3
Q ss_pred cEEEEEcCCCcHHHHHHHH-HCCCCceecc-CCHHHHHHHHHcCCccEEEE
Q 015464 120 VRVAYQGLPGAYSEAAARK-AYPKCETVPC-DQFEAAFKAVELWLVDKAVL 168 (406)
Q Consensus 120 ~~Va~lGp~Gs~s~~AA~~-~f~~~~~~~~-~s~~~v~~aV~~g~~d~gvV 168 (406)
++||++ .||..+..+.+ .|++.++... .+..+++.++.+|++|.+|.
T Consensus 113 krVGvd--~gS~dq~~lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~IDA~Iw 161 (231)
T 2ozz_A 113 KRVGLD--SRSADQKIMTDVFFGDSDVERVDLSYHESLQRIVKGDVDAVIW 161 (231)
T ss_dssp CEEEEC--TTCHHHHHHHHHHHTTSCCEEEECCHHHHHHHHHHTSCCEEEE
T ss_pred EEEEec--CCChhHHHHHhhhcCCCeEEEEECCHHHHHHHHHcCCccEEEE
Confidence 689997 78877766543 4455555566 88999999999999999999
No 164
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=20.71 E-value=2e+02 Score=22.16 Aligned_cols=106 Identities=14% Similarity=0.071 Sum_probs=58.9
Q ss_pred EEEechHHHHHHHHHHhhcCCeEEeccCHHHHHHHHHh-cCCCCeEEEcCHHhHHHcCCceeecCccCCCCCeeEEEEEe
Q 015464 217 RVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVAS-IGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILA 295 (406)
Q Consensus 217 ~VySHpqal~QC~~~L~~~~~~~i~~~sTA~Aa~~v~~-~~~~~~AAIas~~aA~~ygL~il~~~I~d~~~N~TRF~vi~ 295 (406)
-|=.++......+.+|...+..+..+.+..+|.+.+.+ . .++ ..|.........|++++.. +.. ....+.+++++
T Consensus 20 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~-~~d-lvilD~~l~~~~g~~~~~~-l~~-~~~~~~ii~ls 95 (138)
T 2b4a_A 20 LVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLS-TCD-LLIVSDQLVDLSIFSLLDI-VKE-QTKQPSVLILT 95 (138)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGG-SCS-EEEEETTCTTSCHHHHHHH-HTT-SSSCCEEEEEE
T ss_pred EECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCC-CCC-EEEEeCCCCCCCHHHHHHH-HHh-hCCCCCEEEEE
Confidence 34457777788888898878887788888888877765 3 243 4454433333344444332 222 23458899998
Q ss_pred -cCCCCCCCCCCceEEEEEEeCCCcchHHHHHHH
Q 015464 296 -REPIIAGTDRPYKTSIVFTLEEGPGMLFKALAV 328 (406)
Q Consensus 296 -~~~~~~~~~~~~ktsi~f~~~~~pGaL~~~L~~ 328 (406)
....... .... ..-++.-+-.+..|...|..
T Consensus 96 ~~~~~~~~-~~~~-~~~~l~KP~~~~~L~~~i~~ 127 (138)
T 2b4a_A 96 TGRHELIE-SSEH-NLSYLQKPFAISELRAAIDY 127 (138)
T ss_dssp SCC--CCC-CSSS-CEEEEESSCCHHHHHHHHHH
T ss_pred CCCCCHHH-HHHH-HHheeeCCCCHHHHHHHHHH
Confidence 6543221 1122 22233334455666666654
No 165
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=20.61 E-value=1e+02 Score=28.36 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=35.5
Q ss_pred CccEEEEEcCCCcHHHHHHHHHC---C----CCceeccCCHHHHHHHHHcCCccEEEEe
Q 015464 118 TKVRVAYQGLPGAYSEAAARKAY---P----KCETVPCDQFEAAFKAVELWLVDKAVLP 169 (406)
Q Consensus 118 ~~~~Va~lGp~Gs~s~~AA~~~f---~----~~~~~~~~s~~~v~~aV~~g~~d~gvVP 169 (406)
...+|++. .|+.++.....++ | ++++++. ++.+++.++.+|++|.+++.
T Consensus 130 kGk~i~v~--~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 185 (324)
T 3ksx_A 130 KGKRIAFQ--KGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQVDAWAIW 185 (324)
T ss_dssp TTCEEEEC--TTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTCCSEEEEE
T ss_pred CCCEEEec--CCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCCCCEEEEc
Confidence 34678874 7887776554443 3 3556665 79999999999999998775
No 166
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=20.48 E-value=4.7e+02 Score=23.49 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCccEEEEeeecccccccccccchhccCCeEEEEEEEE---eeeeEeecCCC-CCccCccEEEechHHHHH
Q 015464 152 EAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQL---VVNHCLLGLPG-VLKEELKRVFSHPQALAQ 227 (406)
Q Consensus 152 ~~v~~aV~~g~~d~gvVPIENS~~G~V~~t~DlL~~~~l~I~gE~~l---~I~h~L~~~~g-~~l~~I~~VySHpqal~Q 227 (406)
.|+..-|+.|.+|+||+=- |.|.+++..+.--..| +.+.+++++++ ..+ =++|.+-..-+
T Consensus 55 ~DIp~yV~~G~~DlGItG~------------D~l~E~~~~v~el~dLgfG~crl~vAvp~~~~~~--~~RIATkyp~l-- 118 (206)
T 1ve4_A 55 KDVPIYVDLGIAEIGVVGK------------DVLLDSGRDLFEPVDLGFGACRLSLIRRPGDTGP--IRRVATKYPNF-- 118 (206)
T ss_dssp GGHHHHHHTTSSSEEEEEH------------HHHHHCCSCCEEEEECCCSCEEEEEEECTTCCSC--CCEEEESCHHH--
T ss_pred hhHHHHHhCCCccEEEeee------------eeeeecCCCeEEeeccccCcEEEEEEEECCcccC--CCEEEECchHH--
Confidence 5899999999999999853 3333332111111222 23345555554 223 34666655544
Q ss_pred HHHHHhhcC--CeEEeccCHHHHHHHHHhcCCCC-eEEE-cCHHhHHHcCCceee
Q 015464 228 CEMTLSNLG--IVRISADDTAGAAQMVASIGERD-TGAV-ASAQAAEIYGLDILA 278 (406)
Q Consensus 228 C~~~L~~~~--~~~i~~~sTA~Aa~~v~~~~~~~-~AAI-as~~aA~~ygL~il~ 278 (406)
.++|+++.+ ++.+..+..-++|=.+ +..+ .+=| .+-..-+.+||++++
T Consensus 119 ~~~yf~~~gi~~~ii~l~GsvE~ap~~---GlAD~IvDivsTG~TLraNgL~~ie 170 (206)
T 1ve4_A 119 TARLLKERGWAADVVELSGNIELAAVT---GLADAVVDVVQTGATLRAAGLVEVE 170 (206)
T ss_dssp HHHHHHHTTCCCEEEECSSCTHHHHHT---TSSSEEEEEESSSHHHHHTTCEEEE
T ss_pred HHHHHHHCCCcEEEEECCCceeeccCC---CCceEEEEeccCHHHHHHCCCEEeE
Confidence 378998854 5666665555555332 1122 2223 466777899999985
Done!