RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015464
(406 letters)
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL
tepidum TLS, structural genomics, PSI-2, protein
structure initiative; HET: PHE; 2.30A {Chlorobium
tepidum tls}
Length = 283
Score = 415 bits (1070), Expect = e-146
Identities = 136/293 (46%), Positives = 173/293 (59%), Gaps = 25/293 (8%)
Query: 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGS 177
T +AYQG PGAYSE AA + E +PC+ F+ F AV D AV+PIENS+GGS
Sbjct: 5 TNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSLGGS 61
Query: 178 IHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLS-NLG 236
IH+NYDLLLR + I+ E + V HCLLGLPG E + SHPQAL QC + +
Sbjct: 62 IHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQ 121
Query: 237 IVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAR 296
I +A DTAG+A+MVA ++ A+AS +A E+YGLDIL E + D++ N+TRF +A
Sbjct: 122 IRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFCIAH 181
Query: 297 EPIIAGTDRP-------YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPL 349
E + KTSIVF L G LF+ALA FALR I+LTKIESRP RK+
Sbjct: 182 ENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKA- 240
Query: 350 RVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYPM 402
F+YLFY DF D AL +L+EFAT ++VLG Y +
Sbjct: 241 -------------FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGV 280
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics,
midwest center for ST genomics, protein structure
initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter
aurescens}
Length = 313
Score = 374 bits (963), Expect = e-129
Identities = 87/291 (29%), Positives = 130/291 (44%), Gaps = 21/291 (7%)
Query: 118 TKVRVAYQGLPGAYSEAAARKAY--PKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVG 175
+ V + G G ++EAA + +PC A + V D A++PIENSV
Sbjct: 5 SAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVE 64
Query: 176 GSIHRNYDLLLR-HRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234
G + D + L I+ E + + L+ PGV ++KR+ +H A AQC + +
Sbjct: 65 GGVTATLDAIATGQELRIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDE 124
Query: 235 L--GIVRISADDTAGAAQMVASIGERDTGAV-ASAQAAEIYGLDILAEKIQDDDDNVTRF 291
+ TA +A + A+ A AAE GL++LAE I D+ D VTRF
Sbjct: 125 HLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRF 184
Query: 292 LILAREPIIAGTDRPYKTSIVFTL-EEGPGMLFKALAVFALRDINLTKIESRPQRKRPLR 350
++++R + KT++V L E+ PG L + L FA R +NL++IESRP +
Sbjct: 185 ILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYL-- 242
Query: 351 VVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYP 401
Y F ID + D R AL L + R LG Y
Sbjct: 243 ------------GHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYA 281
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase
(PDT), staphylococcus aureu aureus MU50, structural
genomics, PSI-2; 2.30A {Staphylococcus aureus subsp}
SCOP: c.94.1.1 d.58.18.3
Length = 267
Score = 365 bits (939), Expect = e-126
Identities = 66/283 (23%), Positives = 121/283 (42%), Gaps = 22/283 (7%)
Query: 120 VRVAYQGLPGAYSEAAARKAYPKCET--VPCDQFEAAFKAVELWLVDKAVLPIENSVGGS 177
+++ Y G G +S A R+ + + E P KAV V+PIENS+ G+
Sbjct: 4 MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGT 63
Query: 178 IHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGI 237
I+ D L + + GE++L +N L G ++K+V+S A++Q +
Sbjct: 64 INIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQF 123
Query: 238 VRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILARE 297
D T + + A+A + E YG + I+D NVTRFL++ +
Sbjct: 124 DYDYVDSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQ 179
Query: 298 PIIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNK 357
+ ++ + + PG+L L FAL +INL+ IESRP + +
Sbjct: 180 Q-QFDQNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL--------- 229
Query: 358 GSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCY 400
Y F++ ++++ + + L+ + ++G +
Sbjct: 230 -----GMYRFFVQADSAITTD-IKKVIAILETLDFKVEMIGAF 266
>3luy_A Probable chorismate mutase; structural genomics, APC38059,
3-phenylp PSI-2, protein structure initiative; HET: PPY;
2.00A {Bifidobacterium adolescentis}
Length = 329
Score = 358 bits (920), Expect = e-123
Identities = 66/304 (21%), Positives = 109/304 (35%), Gaps = 37/304 (12%)
Query: 118 TKVRVAYQGLPGAYSEAAARKAYPK--------CETVPCDQFEAAFKAVELWLVDKAVLP 169
+ ++ Y G G ++ AA A + + +P D A + ++
Sbjct: 5 SARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHG-DGWGIVA 63
Query: 170 IENSVGGSIHRNYDLLLRHR-LHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQC 228
EN+V G + N D L+ + L V + V G E + +HP LAQC
Sbjct: 64 WENNVEGYVVPNLDALIDAKDLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHGLAQC 123
Query: 229 EMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNV 288
+ ++ + A A A + + A A E+Y + + IQD
Sbjct: 124 KRFIAEHRLSTQPATSNAAACRDLI----PGEIAFGPAICGELYDITRIGTAIQDYQGAA 179
Query: 289 TRFLILAREPIIAGTDRPY---------KTSIVFTLEEGPGMLFKALAVFALRDINLTKI 339
T FL+L+ +A + L GPG+L L VF +N+T
Sbjct: 180 TDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSF 239
Query: 340 ESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGC 399
SRP + R Y F + +A+ + R + AL + E + + L
Sbjct: 240 ISRPIKGRT--------------GTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKTLAV 285
Query: 400 YPMD 403
YP
Sbjct: 286 YPRR 289
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid
hydroxylase, phosphorylation, intrasteric regulation,
allosteric regulation; 2.20A {Rattus norvegicus} SCOP:
d.58.18.3 d.178.1.1 PDB: 2phm_A
Length = 429
Score = 95.2 bits (236), Expect = 1e-21
Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 23/136 (16%)
Query: 268 AAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLEEGPGMLFKALA 327
AA + +L+ K+ D + +++ S++F+L+E G L K L
Sbjct: 2 AAVVLENGVLSRKLSDFGQETSYIED--------NSNQNGAISLIFSLKEEVGALAKVLR 53
Query: 328 VFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHL 387
+F DINLT IESRP R +Y F+ + P + L
Sbjct: 54 LFEENDINLTHIESRPSRLNK--------------DEYEFFTYLDKR-TKPVLGSIIKSL 98
Query: 388 QEFATFLRVLGCYPMD 403
+ +
Sbjct: 99 RNDIGATVHELSRDKE 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 2e-07
Identities = 56/365 (15%), Positives = 104/365 (28%), Gaps = 120/365 (32%)
Query: 76 ERSQDSQSSGFHKDLNLLPTLVYGQIAEPLSIMELSSSPDDGTKVRVAYQGLPGAYSEAA 135
+ Q+ F+K L PT + EP + EL + G + E +
Sbjct: 31 SQLQEQ----FNKILPE-PTEGFAADDEPTTPAELVGK----------FLGYVSSLVEPS 75
Query: 136 ARKAYPKCETVPCDQFEAAF--------KAVELWLVDKAVLPIENSVGGSIHRNY----- 182
+ + + +FE + A +L + L + I +NY
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL---I-KNYITARI 131
Query: 183 -----------DLLLRH------RLHIV--GEVQLVVNHCLLGLPGVLKEELKRVFSHPQ 223
L R +L + G Q + EEL+ ++
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGG--QGNTDDYF--------EELRDLYQTYH 181
Query: 224 ALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY--GLDILAEKI 281
L D +A+ ++ + + A +++ GL+IL +
Sbjct: 182 VLVG---------------DLIKFSAETLSEL------IRTTLDAEKVFTQGLNILEW-L 219
Query: 282 QDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLEEGPGMLFKALAVF--ALRDINLTKI 339
++ + P D+ Y SI + P + LA + + + T
Sbjct: 220 ENPSN----------TP-----DKDYLLSIPISC---PLIGVIQLAHYVVTAKLLGFTPG 261
Query: 340 ESRPQRK----RPLRVV-----------DDSNKGSAKYFDYLFYIDFEASMADPRAQFAL 384
E R K +V + K LF+I A P
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 385 GHLQE 389
L++
Sbjct: 322 SILED 326
Score = 43.5 bits (102), Expect = 1e-04
Identities = 60/319 (18%), Positives = 105/319 (32%), Gaps = 120/319 (37%)
Query: 79 QDSQSSGFHKDL----------------NLLPTLVYGQIAEPLSIMELS-SSP------- 114
Q SQ G DL + T YG SI+++ ++P
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDT--YG-----FSILDIVINNPVNLTIHF 1676
Query: 115 --DDGTKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQ----FE---------------- 152
+ G ++R Y + K + + F
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 153 -----AAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGE-VQLVVNHCLLG 206
AAF+ ++ K ++P + + G H +GE L L
Sbjct: 1737 TLMEKAAFEDLK----SKGLIPADATFAG--------------HSLGEYAALA---SLAD 1775
Query: 207 -LPGVLKEELKRVF----SHPQALAQCEMTLSNLGIV-----RISADDTAGAAQ-MVASI 255
+ ++ ++ VF + A+ + E+ SN G++ R++A + A Q +V +
Sbjct: 1776 VMS--IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 256 GERDTGAVASA--------Q---AAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTD 304
G+R TG + Q A ++ LD + NV F+ L + II
Sbjct: 1834 GKR-TGWLVEIVNYNVENQQYVAAGDLRALDTVT--------NVLNFIKLQKIDII---- 1880
Query: 305 RPYKTSIVFTLEEGPGMLF 323
+ +LEE G LF
Sbjct: 1881 ---ELQKSLSLEEVEGHLF 1896
Score = 37.3 bits (86), Expect = 0.011
Identities = 57/373 (15%), Positives = 106/373 (28%), Gaps = 137/373 (36%)
Query: 14 TPHFHKGL--------PDLVPNRCGFGLDLRVLNKWECTC------VGVLAQTHRAITPV 59
F +GL P P D L + +GV+ H +T
Sbjct: 206 EKVFTQGLNILEWLENPSNTP-------DKDYL----LSIPISCPLIGVIQLAHYVVTAK 254
Query: 60 EDDRPYTP---------------DVQSSEANERSQDSQSSGFHK-DLNLLPTL------- 96
+TP + ++ A + +S F + L
Sbjct: 255 LLG--FTPGELRSYLKGATGHSQGLVTAVAIAETDSWES--FFVSVRKAITVLFFIGVRC 310
Query: 97 --VYGQIAEPLSIMELSSSPDDGTK-----VRVAYQGLPGAYSEAAARKAYPKCETVPCD 149
Y + P SI+E S ++G + L + K +P
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSIS----NLTQEQVQDYVNKT---NSHLPAG 363
Query: 150 QFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPG 209
K VE+ LV N +N VV+ G P
Sbjct: 364 ------KQVEISLV--------NG-----AKNL----------------VVS----GPPQ 384
Query: 210 VL---KEELKRVFSHPQALAQCEMTLSNLGIV------RISA----DDTAGAAQMVASIG 256
L L++ + P L Q + S + +++ A+ ++
Sbjct: 385 SLYGLNLTLRKAKA-PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 257 ERDTGAVASAQAAE-IY----GLDILAEKIQDDDDNVTRFLI--LAREPII-AGTDRPYK 308
++ + + +Y G D ++ +++ ++ + R P+ T +
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSD-----LRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 309 TSIV-FTLEEGPG 320
T I+ F GPG
Sbjct: 499 THILDF----GPG 507
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 4e-05
Identities = 74/486 (15%), Positives = 139/486 (28%), Gaps = 141/486 (29%)
Query: 15 PHFHKGLPDLVPN-RCGFGLDL--RVLNKWECTCV----GVLAQTHRAI----------- 56
F V N C D+ +L+K E + ++ T R
Sbjct: 23 SVF---EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 57 -----TPVEDDRPYTPDVQSSEANERSQD-----SQSSGFHKDLNLLPTL-V-----YGQ 100
+ + + +E + S Q + D + V Y +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 101 IAEPLSIMELSSSPDDGTKVRVAYQGLPGA-YSEAAARKAYPKCETVPCDQFEAAFKAVE 159
+ + L +EL + + V G+ G+ + A + + +
Sbjct: 140 LRQAL--LELRPAKN------VLIDGVLGSGKTWVAL-------DVCLSYKVQCKMDFKI 184
Query: 160 LWL------VDKAVLPIENSVGGSIHRNYDLL------LRHRLHIVGE------VQLVVN 201
WL + VL + + I N+ ++ R+H +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 202 HCLLGLPGVLKEELKRVFSHPQALAQCE--MTLSNLGIVRISADDTAGAAQMVASIGERD 259
+CLL L V + F+ C+ +T + D + A S+
Sbjct: 245 NCLLVLLNVQNAKAWNAFNL-----SCKILLTTRFKQV----TDFLSAATTTHISLDHHS 295
Query: 260 TGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILARE-----P----IIA-----GTDR 305
+ + + L L + QD L RE P IIA G
Sbjct: 296 MT-LTPDEVKSLL-LKYLDCRPQD----------LPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 306 --PYK--------TSIVFTLEE-GPG---MLFKALAVFALRDIN-----LTKIESRPQRK 346
+K T I +L P +F L+VF + L+ I +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVIKS 402
Query: 347 RPLRVVDDSNKGSA--------KYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLG 398
+ VV+ +K S Y++ + + + ++AL H + +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN---EYAL-H-RSIVDHYNIPK 457
Query: 399 CYPMDT 404
+ D
Sbjct: 458 TFDSDD 463
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.026
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 16/44 (36%)
Query: 212 KEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASI 255
K+ LK++ + +L ++ ADD+A A + A++
Sbjct: 19 KQALKKL----------QASL------KLYADDSAPALAIKATM 46
Score = 27.6 bits (60), Expect = 4.3
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 54 RAITPVEDD-RPYTPDVQSSEA 74
+A+ ++ + Y D S+ A
Sbjct: 20 QALKKLQASLKLYADD--SAPA 39
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.7 bits (66), Expect = 1.4
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 30/93 (32%)
Query: 282 QDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIES 341
D +FL++A E P++ I L P + S
Sbjct: 154 SDTKQKGKKFLVIAYE--------PFEN-IAIEL---P---------------PNEILFS 186
Query: 342 RPQRKRPLRVVDDSNKGSAKYFD---YLFYIDF 371
D ++D L+Y+ F
Sbjct: 187 ENNDMDNNNDGVDELNKKCTFWDAISKLYYVQF 219
>1sr8_A Cobalamin biosynthesis protein (CBID); structural genomics, PSI,
protein structure initiative, center for structural
genomics, MCSG; 1.90A {Archaeoglobus fulgidus} SCOP:
e.54.1.1
Length = 298
Score = 29.4 bits (66), Expect = 2.1
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 3/65 (4%)
Query: 101 IAEPLSIMELSSSPDDGTKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQF--EAAFKAV 158
EP + + + G + ARK +P+ + EA
Sbjct: 189 FVEPWCKKLVETKLKIAMQYHRIA-ITTGRKAWLYARKKFPEYQPFVFGVHIDEALKHPG 247
Query: 159 ELWLV 163
E +V
Sbjct: 248 EKIIV 252
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein,
structural genomics, structural genomics consortium,
SGC; HET: 7PE; 1.49A {Homo sapiens}
Length = 201
Score = 28.4 bits (64), Expect = 3.7
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 207 LPGVLKEELKRVFSHPQALAQCE---MTLSNLGIV 238
LP ++ L + H Q +AQ M ++NL V
Sbjct: 120 LPQANRDTLAFLMIHLQRVAQSPHTKMDVANLAKV 154
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium,
GTPase activation, SGC, alternative splicing, cytoplasm,
phosphoprotein; 2.30A {Homo sapiens}
Length = 228
Score = 28.1 bits (63), Expect = 4.8
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 200 VNHCLLGLPGVLKEELKRVFSHPQALAQCE----MTLSNLGIV 238
+ ++ LP +E L+ + + MT +NL +
Sbjct: 131 IKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVC 173
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 27.1 bits (60), Expect = 7.8
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 232 LSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAA-EIYGLDILAEKIQDDDDNVTR 290
L G I D + + + + A+ EIYG ++A ++
Sbjct: 21 LKERGAKVIVMSDV--VRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNH 78
Query: 291 FLIL 294
L++
Sbjct: 79 DLVV 82
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.80A {Homo sapiens}
Length = 202
Score = 27.2 bits (61), Expect = 8.6
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 207 LPGVLKEELKRVFSHPQALAQCE----MTLSNLGIV 238
LP E L+ + +H + + E M NLGIV
Sbjct: 129 LPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 164
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 27.5 bits (61), Expect = 8.8
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 207 LPGVLKEELKRVFSHPQALAQCE----MTLSNLGIV 238
LP E L+ + +H + + E M NLGIV
Sbjct: 390 LPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 425
>2bh1_X General secretion pathway protein E,; transport protein, type II
secretion, EPS, transmembrane, transport, ATP-binding;
2.4A {Vibrio cholerae} SCOP: d.52.10.1
Length = 96
Score = 26.0 bits (57), Expect = 9.2
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 214 ELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIG 256
E KRV H L + + ++ D++ A Q++ IG
Sbjct: 53 ETKRVVKHAFQLIELSQAEFESKLTQVYQRDSSEARQLMEDIG 95
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein,
GTPase-activating protein for RHO family members,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2ee5_A
Length = 209
Score = 26.8 bits (60), Expect = 9.8
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 10/55 (18%)
Query: 207 LPGVLKEELKRVFSHPQALAQCE----MTLSNLGIV------RISADDTAGAAQM 251
V + + V +H ++Q MT NL I R ++ +
Sbjct: 130 FHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFLSTT 184
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics
consortium, GTPase-activating protein, SGC, alternative
splicing, anti-oncogene; 2.80A {Homo sapiens}
Length = 246
Score = 27.0 bits (60), Expect = 9.9
Identities = 12/55 (21%), Positives = 14/55 (25%), Gaps = 10/55 (18%)
Query: 207 LPGVLKEELKRVFSHPQALAQCE----MTLSNLGIV------RISADDTAGAAQM 251
P E K V SH ++ MT NL I R
Sbjct: 171 FPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRPDFSTMDALTAT 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.407
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,279,816
Number of extensions: 390662
Number of successful extensions: 806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 775
Number of HSP's successfully gapped: 25
Length of query: 406
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 310
Effective length of database: 4,021,377
Effective search space: 1246626870
Effective search space used: 1246626870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)