Query 015465
Match_columns 406
No_of_seqs 454 out of 3241
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:34:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09601 GTP-binding protein Y 100.0 1.4E-81 3.1E-86 618.1 28.7 362 24-398 2-364 (364)
2 PTZ00258 GTP-binding protein; 100.0 4.5E-81 9.8E-86 621.2 30.5 376 13-398 10-388 (390)
3 KOG1491 Predicted GTP-binding 100.0 1.1E-80 2.5E-85 588.7 28.2 383 1-397 1-390 (391)
4 TIGR00092 GTP-binding protein 100.0 2.7E-80 5.8E-85 609.1 29.7 362 24-398 2-368 (368)
5 COG0012 Predicted GTPase, prob 100.0 1.8E-78 4E-83 587.0 25.4 364 23-398 1-372 (372)
6 PRK09602 translation-associate 100.0 3.8E-51 8.2E-56 410.9 24.4 334 25-394 2-392 (396)
7 cd01900 YchF YchF subfamily. 100.0 1.4E-47 2.9E-52 366.6 20.5 273 27-302 1-274 (274)
8 COG1163 DRG Predicted GTPase [ 100.0 3.1E-36 6.6E-41 285.4 10.1 269 25-365 64-345 (365)
9 PF06071 YchF-GTPase_C: Protei 100.0 1.2E-36 2.6E-41 234.7 5.8 84 304-397 1-84 (84)
10 cd04867 TGS_YchF_C TGS_YchF_C: 100.0 3.2E-36 6.9E-41 230.7 5.1 83 304-396 1-83 (83)
11 cd01899 Ygr210 Ygr210 subfamil 100.0 9.3E-30 2E-34 249.1 18.3 248 27-282 1-268 (318)
12 KOG1486 GTP-binding protein DR 99.9 2.2E-26 4.7E-31 210.9 11.3 263 24-350 62-339 (364)
13 KOG1487 GTP-binding protein DR 99.8 2.6E-21 5.5E-26 178.4 5.1 262 26-350 61-333 (358)
14 cd01896 DRG The developmentall 99.8 5.9E-20 1.3E-24 173.1 8.5 223 26-310 2-233 (233)
15 KOG1489 Predicted GTP-binding 99.8 3.6E-19 7.7E-24 168.9 10.1 90 25-130 197-286 (366)
16 COG4152 ABC-type uncharacteriz 99.8 1.3E-19 2.8E-24 166.7 5.6 167 13-207 17-215 (300)
17 COG0536 Obg Predicted GTPase [ 99.8 1.7E-18 3.7E-23 166.2 11.7 90 25-130 160-249 (369)
18 COG1159 Era GTPase [General fu 99.7 2.6E-18 5.6E-23 162.9 5.5 194 25-237 7-220 (298)
19 COG1120 FepC ABC-type cobalami 99.7 1.4E-17 3E-22 157.2 9.1 172 16-206 20-223 (258)
20 PRK12296 obgE GTPase CgtA; Rev 99.7 9.5E-17 2.1E-21 164.9 14.2 90 24-130 159-248 (500)
21 COG4586 ABC-type uncharacteriz 99.7 1.7E-17 3.7E-22 154.9 4.5 183 15-230 41-259 (325)
22 PRK12298 obgE GTPase CgtA; Rev 99.7 5.6E-16 1.2E-20 156.2 13.2 162 25-210 160-348 (390)
23 COG1131 CcmA ABC-type multidru 99.7 5.3E-17 1.2E-21 158.0 4.1 165 13-205 20-220 (293)
24 PRK12299 obgE GTPase CgtA; Rev 99.6 1.1E-15 2.4E-20 151.2 12.5 89 25-129 159-247 (335)
25 PF02421 FeoB_N: Ferrous iron 99.6 7.9E-16 1.7E-20 135.5 9.6 59 26-101 2-60 (156)
26 COG4555 NatA ABC-type Na+ tran 99.6 8.5E-17 1.8E-21 144.4 3.0 166 16-207 20-218 (245)
27 COG1121 ZnuC ABC-type Mn/Zn tr 99.6 2.7E-16 5.8E-21 147.9 6.3 172 13-205 19-221 (254)
28 COG1137 YhbG ABC-type (unclass 99.6 2.7E-17 5.9E-22 147.4 -1.7 164 18-206 24-223 (243)
29 TIGR02729 Obg_CgtA Obg family 99.6 5.2E-15 1.1E-19 146.2 14.0 89 25-129 158-246 (329)
30 PRK12297 obgE GTPase CgtA; Rev 99.6 5.4E-15 1.2E-19 150.1 14.1 88 26-129 160-247 (424)
31 COG1127 Ttg2A ABC-type transpo 99.6 9.5E-16 2.1E-20 141.3 5.2 169 17-207 27-231 (263)
32 COG0411 LivG ABC-type branched 99.6 1.8E-16 3.8E-21 146.6 0.1 165 18-206 24-234 (250)
33 PRK13537 nodulation ABC transp 99.6 6.6E-16 1.4E-20 151.3 2.9 172 15-206 24-222 (306)
34 cd04938 TGS_Obg-like TGS_Obg-l 99.6 3E-15 6.6E-20 115.8 5.4 64 304-395 1-75 (76)
35 PRK13536 nodulation factor exp 99.6 7.8E-16 1.7E-20 152.8 2.6 171 16-206 59-256 (340)
36 COG4559 ABC-type hemin transpo 99.6 1.4E-14 2.9E-19 131.3 10.1 161 20-205 23-224 (259)
37 COG1134 TagH ABC-type polysacc 99.5 4.4E-15 9.6E-20 137.5 4.6 174 15-217 44-238 (249)
38 TIGR01188 drrA daunorubicin re 99.5 3E-15 6.5E-20 146.4 2.7 170 16-205 11-207 (302)
39 COG1125 OpuBA ABC-type proline 99.5 9.2E-15 2E-19 135.6 4.8 173 14-205 17-219 (309)
40 COG1116 TauB ABC-type nitrate/ 99.5 5.4E-15 1.2E-19 137.6 2.9 164 16-198 21-207 (248)
41 COG1135 AbcC ABC-type metal io 99.5 2.7E-14 5.7E-19 136.1 6.2 166 14-207 22-227 (339)
42 COG1126 GlnQ ABC-type polar am 99.5 3.1E-14 6.7E-19 129.5 6.0 164 16-204 20-218 (240)
43 TIGR03522 GldA_ABC_ATP gliding 99.5 9.1E-15 2E-19 143.0 2.4 170 16-206 20-216 (301)
44 COG3638 ABC-type phosphate/pho 99.5 7.7E-14 1.7E-18 128.4 8.2 180 16-214 22-240 (258)
45 PRK09536 btuD corrinoid ABC tr 99.5 2.4E-14 5.2E-19 144.8 4.8 170 16-205 21-222 (402)
46 TIGR01288 nodI ATP-binding ABC 99.5 1.7E-14 3.6E-19 141.3 3.1 170 16-205 22-218 (303)
47 TIGR00436 era GTP-binding prot 99.5 5.3E-14 1.2E-18 135.5 6.3 193 26-237 2-212 (270)
48 COG3842 PotA ABC-type spermidi 99.5 3.8E-14 8.2E-19 139.6 5.2 175 13-206 20-221 (352)
49 COG1160 Predicted GTPases [Gen 99.5 2.1E-13 4.7E-18 136.2 10.6 87 25-128 4-93 (444)
50 cd03261 ABC_Org_Solvent_Resist 99.5 3.8E-14 8.3E-19 133.5 4.7 171 16-205 18-220 (235)
51 cd03215 ABC_Carb_Monos_II This 99.5 4.7E-14 1E-18 127.9 5.0 148 17-199 19-181 (182)
52 COG0410 LivF ABC-type branched 99.5 7.8E-14 1.7E-18 128.2 6.3 166 15-205 20-220 (237)
53 cd03259 ABC_Carb_Solutes_like 99.5 2.2E-14 4.7E-19 133.1 2.5 168 16-202 18-211 (213)
54 TIGR00960 3a0501s02 Type II (G 99.5 3.1E-14 6.7E-19 132.3 3.5 164 16-199 21-215 (216)
55 COG1118 CysA ABC-type sulfate/ 99.5 6.5E-14 1.4E-18 133.2 5.6 171 15-205 19-221 (345)
56 cd03226 ABC_cobalt_CbiO_domain 99.4 3.2E-14 7E-19 131.2 3.4 165 16-200 18-204 (205)
57 cd03268 ABC_BcrA_bacitracin_re 99.4 5E-14 1.1E-18 130.2 4.2 167 16-202 18-206 (208)
58 cd03229 ABC_Class3 This class 99.4 8.1E-14 1.8E-18 125.8 5.4 150 16-198 18-177 (178)
59 cd03224 ABC_TM1139_LivF_branch 99.4 8E-14 1.7E-18 130.0 5.5 169 16-204 18-214 (222)
60 TIGR02314 ABC_MetN D-methionin 99.4 2E-14 4.4E-19 142.7 1.3 172 15-205 22-224 (343)
61 cd03265 ABC_DrrA DrrA is the A 99.4 4.2E-14 9.2E-19 131.9 2.9 171 16-205 18-215 (220)
62 cd03293 ABC_NrtD_SsuB_transpor 99.4 3.6E-14 7.8E-19 132.3 2.0 171 16-205 22-217 (220)
63 cd01881 Obg_like The Obg-like 99.4 8.3E-13 1.8E-17 117.4 10.7 84 29-129 1-85 (176)
64 COG3839 MalK ABC-type sugar tr 99.4 4.9E-14 1.1E-18 138.1 2.8 171 16-205 21-217 (338)
65 cd03256 ABC_PhnC_transporter A 99.4 6.4E-14 1.4E-18 132.2 3.5 171 16-205 19-228 (241)
66 cd03219 ABC_Mj1267_LivG_branch 99.4 4.7E-14 1E-18 132.9 2.4 169 16-204 18-225 (236)
67 TIGR01184 ntrCD nitrate transp 99.4 5.8E-14 1.3E-18 132.0 2.9 168 18-204 5-197 (230)
68 TIGR02315 ABC_phnC phosphonate 99.4 9.5E-14 2.1E-18 131.3 4.2 172 15-205 19-229 (243)
69 cd03269 ABC_putative_ATPase Th 99.4 1.2E-13 2.6E-18 127.8 4.8 162 17-201 19-207 (210)
70 TIGR02673 FtsE cell division A 99.4 6.6E-14 1.4E-18 129.9 3.0 163 16-198 20-213 (214)
71 PRK11650 ugpC glycerol-3-phosp 99.4 2E-14 4.3E-19 143.6 -0.6 171 16-205 22-218 (356)
72 PRK11614 livF leucine/isoleuci 99.4 9.9E-14 2.1E-18 130.8 4.1 170 16-205 23-220 (237)
73 cd03218 ABC_YhbG The ABC trans 99.4 7.6E-14 1.7E-18 131.1 3.3 170 16-205 18-216 (232)
74 cd03216 ABC_Carb_Monos_I This 99.4 2.9E-13 6.2E-18 120.6 6.8 144 16-201 18-161 (163)
75 PRK15494 era GTPase Era; Provi 99.4 8E-13 1.7E-17 131.3 10.7 189 26-237 54-264 (339)
76 COG3840 ThiQ ABC-type thiamine 99.4 3.2E-13 6.8E-18 119.7 6.8 172 17-207 18-215 (231)
77 cd03266 ABC_NatA_sodium_export 99.4 6.1E-14 1.3E-18 130.5 2.5 163 16-201 23-215 (218)
78 cd03301 ABC_MalK_N The N-termi 99.4 6.5E-14 1.4E-18 129.8 2.5 168 16-202 18-211 (213)
79 PRK11153 metN DL-methionine tr 99.4 6E-14 1.3E-18 139.7 2.4 172 15-205 22-224 (343)
80 PRK09493 glnQ glutamine ABC tr 99.4 1.4E-13 2.9E-18 130.2 4.7 170 16-205 19-219 (240)
81 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.4 9.3E-14 2E-18 129.2 3.5 164 16-199 22-217 (218)
82 cd03214 ABC_Iron-Siderophores_ 99.4 1.2E-13 2.7E-18 124.9 4.2 151 16-201 17-177 (180)
83 cd03258 ABC_MetN_methionine_tr 99.4 7.3E-14 1.6E-18 131.3 2.8 171 16-205 23-224 (233)
84 cd03298 ABC_ThiQ_thiamine_tran 99.4 9.8E-14 2.1E-18 128.5 3.6 167 16-201 16-208 (211)
85 cd03296 ABC_CysA_sulfate_impor 99.4 9.9E-14 2.1E-18 131.1 3.6 171 16-205 20-220 (239)
86 COG4604 CeuD ABC-type enteroch 99.4 2.5E-13 5.3E-18 121.9 5.9 172 16-206 19-220 (252)
87 cd03225 ABC_cobalt_CbiO_domain 99.4 8.4E-14 1.8E-18 128.9 3.0 163 16-198 19-210 (211)
88 TIGR03410 urea_trans_UrtE urea 99.4 2.2E-13 4.8E-18 127.8 5.6 172 15-205 17-215 (230)
89 TIGR03265 PhnT2 putative 2-ami 99.4 3.1E-14 6.8E-19 142.1 -0.4 171 16-205 22-218 (353)
90 TIGR01186 proV glycine betaine 99.4 2.9E-14 6.3E-19 142.4 -0.8 172 15-205 10-213 (363)
91 PRK11247 ssuB aliphatic sulfon 99.4 8.1E-14 1.7E-18 133.3 2.2 170 16-205 30-217 (257)
92 cd03263 ABC_subfamily_A The AB 99.4 9.6E-14 2.1E-18 129.3 2.5 168 15-205 19-215 (220)
93 TIGR01277 thiQ thiamine ABC tr 99.4 1.5E-13 3.2E-18 127.6 3.5 170 16-204 16-211 (213)
94 cd03213 ABCG_EPDR ABCG transpo 99.4 3.1E-13 6.8E-18 123.8 5.6 156 14-201 25-191 (194)
95 cd03222 ABC_RNaseL_inhibitor T 99.4 4.2E-13 9.1E-18 121.2 6.1 130 19-199 20-149 (177)
96 PRK11231 fecE iron-dicitrate t 99.4 1.6E-13 3.6E-18 130.9 3.6 170 16-205 20-221 (255)
97 PRK13641 cbiO cobalt transport 99.4 7.6E-14 1.6E-18 135.6 1.4 171 15-205 24-228 (287)
98 PRK10895 lipopolysaccharide AB 99.4 3.3E-13 7.3E-18 127.5 5.7 170 16-205 21-220 (241)
99 COG1129 MglA ABC-type sugar tr 99.4 4.2E-13 9.2E-18 136.9 6.7 166 15-205 25-228 (500)
100 cd03257 ABC_NikE_OppD_transpor 99.4 2.5E-13 5.5E-18 127.0 4.8 168 15-201 22-225 (228)
101 cd03230 ABC_DR_subfamily_A Thi 99.4 3.4E-13 7.3E-18 121.2 5.3 148 16-199 18-172 (173)
102 cd03262 ABC_HisP_GlnQ_permease 99.4 3.5E-13 7.5E-18 124.9 5.4 164 16-199 18-212 (213)
103 PRK11000 maltose/maltodextrin 99.4 1.6E-13 3.5E-18 137.8 3.4 171 16-205 21-217 (369)
104 cd03233 ABC_PDR_domain1 The pl 99.4 4.2E-13 9E-18 123.7 5.9 161 16-202 25-200 (202)
105 PRK11432 fbpC ferric transport 99.4 4.9E-14 1.1E-18 140.5 -0.4 171 16-205 24-220 (351)
106 PRK10908 cell division protein 99.4 1.7E-13 3.6E-18 128.0 3.2 166 16-201 20-216 (222)
107 PRK10851 sulfate/thiosulfate t 99.4 1.2E-13 2.6E-18 137.8 2.3 171 16-205 20-220 (353)
108 PRK11831 putative ABC transpor 99.4 2.7E-13 5.8E-18 130.5 4.5 171 16-205 25-227 (269)
109 cd03235 ABC_Metallic_Cations A 99.4 2.3E-13 4.9E-18 126.2 3.9 163 16-198 17-208 (213)
110 cd03294 ABC_Pro_Gly_Bertaine T 99.4 1.2E-13 2.7E-18 132.8 2.2 171 16-205 42-244 (269)
111 TIGR03411 urea_trans_UrtD urea 99.4 1.3E-13 2.8E-18 130.4 2.2 169 16-205 20-225 (242)
112 TIGR03740 galliderm_ABC gallid 99.4 1.8E-13 4E-18 127.8 3.2 171 16-206 18-208 (223)
113 PRK11300 livG leucine/isoleuci 99.4 2.2E-13 4.8E-18 129.8 3.7 171 16-205 23-237 (255)
114 PRK13647 cbiO cobalt transport 99.4 1.2E-13 2.5E-18 133.4 1.8 167 16-205 23-221 (274)
115 TIGR02142 modC_ABC molybdenum 99.4 2.5E-13 5.5E-18 135.8 4.2 171 16-205 15-215 (354)
116 cd03292 ABC_FtsE_transporter F 99.4 1.6E-13 3.4E-18 127.3 2.4 164 16-199 19-213 (214)
117 cd03246 ABCC_Protease_Secretio 99.4 4.6E-13 1E-17 120.4 5.3 146 16-199 20-172 (173)
118 PRK13652 cbiO cobalt transport 99.4 2.7E-13 6E-18 131.0 4.1 172 15-205 21-221 (277)
119 cd03260 ABC_PstB_phosphate_tra 99.4 3.9E-13 8.4E-18 125.9 4.7 169 16-205 18-223 (227)
120 TIGR03258 PhnT 2-aminoethylpho 99.4 2.1E-13 4.6E-18 136.4 3.1 171 16-205 23-222 (362)
121 PRK10619 histidine/lysine/argi 99.4 1.8E-13 3.8E-18 130.8 2.4 170 16-205 23-235 (257)
122 PRK11264 putative amino-acid A 99.4 4.7E-13 1E-17 127.2 5.2 170 16-205 21-227 (250)
123 TIGR03873 F420-0_ABC_ATP propo 99.4 1.9E-13 4.1E-18 130.5 2.4 170 16-205 19-220 (256)
124 PRK11144 modC molybdate transp 99.4 2.9E-13 6.2E-18 135.2 3.7 170 16-205 16-212 (352)
125 TIGR03771 anch_rpt_ABC anchore 99.4 3.4E-13 7.3E-18 126.2 3.8 162 20-205 2-195 (223)
126 COG3845 ABC-type uncharacteriz 99.4 1.8E-12 3.8E-17 130.4 9.1 165 13-202 19-220 (501)
127 PRK10070 glycine betaine trans 99.4 7.3E-14 1.6E-18 141.2 -0.8 172 15-205 45-248 (400)
128 PRK13548 hmuV hemin importer A 99.4 2.9E-13 6.2E-18 129.5 3.3 171 16-205 20-224 (258)
129 cd03297 ABC_ModC_molybdenum_tr 99.4 3.7E-13 8E-18 125.0 3.9 167 16-202 16-212 (214)
130 PRK10771 thiQ thiamine transpo 99.4 2.2E-13 4.8E-18 128.1 2.5 171 16-205 17-213 (232)
131 PRK10575 iron-hydroxamate tran 99.4 2.6E-13 5.6E-18 130.3 2.8 170 17-205 30-231 (265)
132 cd03264 ABC_drug_resistance_li 99.4 2.7E-13 6E-18 125.5 2.9 162 17-202 19-209 (211)
133 PRK13636 cbiO cobalt transport 99.4 2.9E-13 6.2E-18 131.3 3.1 172 16-206 24-226 (283)
134 TIGR03864 PQQ_ABC_ATP ABC tran 99.4 2.6E-13 5.6E-18 128.0 2.7 170 16-205 19-215 (236)
135 PRK11124 artP arginine transpo 99.4 5.6E-13 1.2E-17 126.1 4.9 167 16-205 20-224 (242)
136 cd03295 ABC_OpuCA_Osmoprotecti 99.4 2.7E-13 5.8E-18 128.4 2.6 171 15-204 18-218 (242)
137 COG1124 DppF ABC-type dipeptid 99.3 2.6E-12 5.7E-17 119.0 9.0 160 16-204 25-224 (252)
138 PRK13643 cbiO cobalt transport 99.3 2.3E-13 5E-18 132.3 2.0 169 14-205 22-227 (288)
139 PRK09452 potA putrescine/sperm 99.3 1.5E-13 3.3E-18 138.0 0.7 170 17-205 33-228 (375)
140 cd03217 ABC_FeS_Assembly ABC-t 99.3 6.7E-13 1.5E-17 122.1 4.9 157 16-204 18-187 (200)
141 TIGR02769 nickel_nikE nickel i 99.3 5E-13 1.1E-17 128.3 4.2 171 16-205 29-234 (265)
142 TIGR03005 ectoine_ehuA ectoine 99.3 3.1E-13 6.7E-18 128.7 2.7 171 16-205 18-230 (252)
143 PRK14250 phosphate ABC transpo 99.3 4.1E-13 8.9E-18 127.1 3.4 171 15-204 20-214 (241)
144 cd03247 ABCC_cytochrome_bd The 99.3 1E-12 2.3E-17 118.5 5.9 150 16-201 20-175 (178)
145 COG0370 FeoB Fe2+ transport sy 99.3 5.1E-12 1.1E-16 131.7 11.7 86 25-128 4-91 (653)
146 PRK13637 cbiO cobalt transport 99.3 3.7E-13 8.1E-18 130.7 3.1 173 14-205 23-228 (287)
147 PRK10253 iron-enterobactin tra 99.3 3.5E-13 7.6E-18 129.4 2.8 171 16-205 25-227 (265)
148 PRK11629 lolD lipoprotein tran 99.3 3.1E-13 6.8E-18 127.1 2.4 169 16-204 27-227 (233)
149 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.3 8.5E-13 1.8E-17 115.2 4.8 128 15-199 17-144 (144)
150 cd03228 ABCC_MRP_Like The MRP 99.3 8.9E-13 1.9E-17 118.3 5.0 144 16-198 20-170 (171)
151 PRK15439 autoinducer 2 ABC tra 99.3 6.7E-13 1.5E-17 139.0 4.8 171 16-206 29-224 (510)
152 TIGR02211 LolD_lipo_ex lipopro 99.3 4.2E-13 9.2E-18 125.1 2.9 165 16-200 23-219 (221)
153 PRK00089 era GTPase Era; Revie 99.3 1E-12 2.2E-17 127.8 5.7 189 25-237 6-219 (292)
154 PRK11607 potG putrescine trans 99.3 2.1E-13 4.6E-18 137.2 0.8 171 16-205 37-233 (377)
155 PRK13650 cbiO cobalt transport 99.3 3.2E-13 7E-18 130.7 1.9 170 16-205 25-223 (279)
156 COG1119 ModF ABC-type molybden 99.3 1E-12 2.2E-17 121.8 5.1 165 15-204 48-255 (257)
157 cd03232 ABC_PDR_domain2 The pl 99.3 1.2E-12 2.6E-17 119.6 5.2 157 16-202 25-190 (192)
158 PRK13649 cbiO cobalt transport 99.3 5.1E-13 1.1E-17 129.3 2.9 171 15-205 24-228 (280)
159 PRK10584 putative ABC transpor 99.3 4.8E-13 1E-17 125.3 2.3 166 16-201 28-225 (228)
160 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.3 9.6E-13 2.1E-17 123.3 4.2 159 18-202 42-222 (224)
161 PRK13638 cbiO cobalt transport 99.3 8.6E-13 1.9E-17 127.1 3.9 171 15-205 18-219 (271)
162 PRK10762 D-ribose transporter 99.3 1.5E-12 3.2E-17 136.1 6.0 170 16-205 22-224 (501)
163 PRK11248 tauB taurine transpor 99.3 5.5E-13 1.2E-17 127.4 2.4 169 16-203 19-212 (255)
164 TIGR03415 ABC_choXWV_ATP choli 99.3 3.5E-13 7.5E-18 135.5 1.1 171 16-205 42-248 (382)
165 PRK13634 cbiO cobalt transport 99.3 4E-13 8.6E-18 130.8 1.5 172 15-205 24-229 (290)
166 PRK15112 antimicrobial peptide 99.3 9.8E-13 2.1E-17 126.5 4.1 172 15-205 30-233 (267)
167 PRK13644 cbiO cobalt transport 99.3 3E-13 6.5E-18 130.5 0.5 167 15-205 19-218 (274)
168 cd03300 ABC_PotA_N PotA is an 99.3 5.7E-13 1.2E-17 125.4 2.3 166 16-204 18-213 (232)
169 TIGR00972 3a0107s01c2 phosphat 99.3 7E-13 1.5E-17 125.9 2.9 169 15-205 18-226 (247)
170 COG1117 PstB ABC-type phosphat 99.3 4.4E-12 9.6E-17 115.2 7.9 173 16-205 25-231 (253)
171 PRK13635 cbiO cobalt transport 99.3 6.3E-13 1.4E-17 128.6 2.6 167 15-205 24-223 (279)
172 PRK09700 D-allose transporter 99.3 6.1E-13 1.3E-17 139.2 2.6 172 15-206 22-229 (510)
173 PRK13639 cbiO cobalt transport 99.3 9.1E-13 2E-17 127.3 3.5 168 15-205 19-220 (275)
174 PRK13646 cbiO cobalt transport 99.3 7.2E-13 1.6E-17 128.7 2.6 173 14-205 23-229 (286)
175 cd03237 ABC_RNaseL_inhibitor_d 99.3 1.3E-12 2.7E-17 124.3 4.1 156 18-197 19-191 (246)
176 COG1122 CbiO ABC-type cobalt t 99.3 1.6E-12 3.4E-17 122.3 4.7 164 14-205 20-222 (235)
177 TIGR01257 rim_protein retinal- 99.3 1.6E-12 3.5E-17 151.7 5.7 171 17-207 1958-2155(2272)
178 TIGR02770 nickel_nikD nickel i 99.3 1.7E-12 3.6E-17 122.0 4.8 169 18-205 6-209 (230)
179 COG4175 ProV ABC-type proline/ 99.3 1.1E-12 2.3E-17 125.3 3.5 169 18-205 48-248 (386)
180 PRK10982 galactose/methyl gala 99.3 9.7E-13 2.1E-17 137.1 3.5 170 16-205 16-217 (491)
181 PRK15056 manganese/iron transp 99.3 1.8E-12 3.9E-17 125.0 5.1 169 16-205 25-224 (272)
182 PRK13651 cobalt transporter AT 99.3 1.2E-12 2.5E-17 128.3 3.7 171 15-205 24-248 (305)
183 PRK14247 phosphate ABC transpo 99.3 1.1E-12 2.3E-17 124.8 3.3 175 15-205 20-228 (250)
184 COG2884 FtsE Predicted ATPase 99.3 8.2E-13 1.8E-17 117.9 2.3 170 5-203 10-218 (223)
185 TIGR00968 3a0106s01 sulfate AB 99.3 1.2E-12 2.5E-17 123.7 3.5 170 17-205 19-214 (237)
186 cd03234 ABCG_White The White s 99.3 2.5E-12 5.3E-17 120.5 5.5 168 15-202 24-224 (226)
187 PRK09984 phosphonate/organopho 99.3 1.2E-12 2.6E-17 125.4 3.4 171 16-205 22-236 (262)
188 PRK10938 putative molybdenum t 99.3 1.6E-12 3.5E-17 135.4 4.7 167 16-205 21-218 (490)
189 cd03267 ABC_NatA_like Similar 99.3 1.4E-12 3E-17 123.1 3.8 162 17-201 40-233 (236)
190 PRK03695 vitamin B12-transport 99.3 1.5E-12 3.3E-17 123.8 3.9 166 16-205 14-216 (248)
191 PRK13549 xylose transporter AT 99.3 9.3E-13 2E-17 137.8 2.7 170 17-206 281-489 (506)
192 PRK13547 hmuV hemin importer A 99.3 1.5E-12 3.2E-17 125.6 3.9 171 16-205 19-238 (272)
193 COG2262 HflX GTPases [General 99.3 1.8E-11 3.8E-16 121.0 11.4 87 25-129 193-282 (411)
194 PRK11288 araG L-arabinose tran 99.3 1.2E-12 2.5E-17 136.9 3.0 170 17-206 272-480 (501)
195 cd01898 Obg Obg subfamily. Th 99.3 6E-12 1.3E-16 111.4 7.2 88 26-129 2-89 (170)
196 PRK13549 xylose transporter AT 99.3 1.1E-12 2.3E-17 137.3 2.7 172 15-206 22-227 (506)
197 PRK11701 phnK phosphonate C-P 99.3 2.2E-12 4.8E-17 123.3 4.4 171 16-205 24-235 (258)
198 cd03251 ABCC_MsbA MsbA is an e 99.3 3.1E-12 6.7E-17 120.3 5.3 167 16-204 20-218 (234)
199 PRK13632 cbiO cobalt transport 99.3 6.8E-13 1.5E-17 127.8 0.9 171 15-205 26-225 (271)
200 PRK13543 cytochrome c biogenes 99.3 2.5E-12 5.5E-17 119.5 4.7 158 15-191 28-207 (214)
201 PRK15079 oligopeptide ABC tran 99.3 1.2E-12 2.6E-17 129.7 2.5 172 15-205 38-245 (331)
202 PRK14242 phosphate transporter 99.3 1.4E-12 3E-17 124.3 2.8 174 16-205 24-231 (253)
203 TIGR01978 sufC FeS assembly AT 99.3 2.9E-12 6.2E-17 121.2 4.9 172 16-205 18-228 (243)
204 PRK14269 phosphate ABC transpo 99.3 2.2E-12 4.8E-17 122.4 4.1 170 16-205 20-224 (246)
205 PRK14267 phosphate ABC transpo 99.3 1.9E-12 4E-17 123.3 3.6 175 15-205 21-231 (253)
206 PRK13631 cbiO cobalt transport 99.3 1.2E-12 2.5E-17 129.2 1.9 171 15-205 43-259 (320)
207 PRK14273 phosphate ABC transpo 99.3 1.5E-12 3.2E-17 124.1 2.6 169 16-205 25-232 (254)
208 PRK09700 D-allose transporter 99.3 1.5E-12 3.2E-17 136.4 2.6 168 16-203 281-490 (510)
209 cd03299 ABC_ModC_like Archeal 99.3 2.1E-12 4.6E-17 121.7 3.3 171 16-205 17-213 (235)
210 PRK13545 tagH teichoic acids e 99.3 3.1E-12 6.6E-17 132.0 4.7 154 17-205 43-226 (549)
211 PRK10762 D-ribose transporter 99.3 1.5E-12 3.3E-17 136.0 2.5 170 16-205 270-478 (501)
212 PRK14270 phosphate ABC transpo 99.3 2.7E-12 5.8E-17 122.2 3.9 174 16-205 22-229 (251)
213 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.3 3.7E-12 8.1E-17 120.1 4.8 167 16-205 21-220 (238)
214 PRK15439 autoinducer 2 ABC tra 99.3 3.5E-12 7.5E-17 133.6 5.0 168 17-204 282-485 (510)
215 PRK13648 cbiO cobalt transport 99.3 2.2E-12 4.9E-17 124.1 3.2 170 16-205 27-225 (269)
216 PLN03211 ABC transporter G-25; 99.3 6.9E-12 1.5E-16 134.7 7.1 171 16-206 86-291 (659)
217 cd03254 ABCC_Glucan_exporter_l 99.3 5.9E-12 1.3E-16 118.0 5.8 168 15-204 20-219 (229)
218 cd03252 ABCC_Hemolysin The ABC 99.3 5.4E-12 1.2E-16 118.9 5.6 168 16-205 20-219 (237)
219 cd03245 ABCC_bacteriocin_expor 99.3 3E-12 6.6E-17 119.2 3.7 163 16-201 22-217 (220)
220 PRK13546 teichoic acids export 99.3 5E-12 1.1E-16 121.4 5.2 161 16-205 42-226 (264)
221 PRK10744 pstB phosphate transp 99.3 2.7E-12 5.9E-17 122.9 3.4 174 16-205 31-238 (260)
222 cd03244 ABCC_MRP_domain2 Domai 99.3 3.8E-12 8.3E-17 118.6 4.3 163 15-203 21-218 (221)
223 PRK13633 cobalt transporter AT 99.3 1.9E-12 4.1E-17 125.4 2.3 171 15-205 27-227 (280)
224 cd03253 ABCC_ATM1_transporter 99.2 3.3E-12 7.1E-17 120.3 3.7 166 16-204 19-217 (236)
225 COG2274 SunT ABC-type bacterio 99.2 6.8E-12 1.5E-16 134.7 6.6 163 16-206 491-691 (709)
226 PRK13645 cbiO cobalt transport 99.2 2.6E-12 5.7E-17 124.9 3.0 172 15-205 28-234 (289)
227 PRK14268 phosphate ABC transpo 99.2 3.3E-12 7.3E-17 122.1 3.6 174 16-205 30-236 (258)
228 cd03231 ABC_CcmA_heme_exporter 99.2 6.1E-12 1.3E-16 115.8 5.2 47 16-73 18-64 (201)
229 COG0488 Uup ATPase components 99.2 5.9E-12 1.3E-16 131.1 5.6 66 130-207 170-236 (530)
230 cd03369 ABCC_NFT1 Domain 2 of 99.2 1E-11 2.2E-16 114.7 6.6 159 16-203 26-204 (207)
231 TIGR03797 NHPM_micro_ABC2 NHPM 99.2 1.7E-12 3.6E-17 140.7 1.5 159 16-205 471-667 (686)
232 PRK14238 phosphate transporter 99.2 3.3E-12 7.3E-17 123.0 3.5 169 16-205 42-249 (271)
233 PRK15177 Vi polysaccharide exp 99.2 6.2E-12 1.3E-16 116.9 5.1 164 18-207 7-188 (213)
234 TIGR03796 NHPM_micro_ABC1 NHPM 99.2 4.4E-12 9.6E-17 137.9 4.7 158 18-206 499-695 (710)
235 PF01926 MMR_HSR1: 50S ribosom 99.2 4.9E-12 1.1E-16 105.8 3.8 86 26-128 1-89 (116)
236 PRK13640 cbiO cobalt transport 99.2 2.3E-12 5E-17 124.9 2.1 170 16-205 25-226 (282)
237 PRK14262 phosphate ABC transpo 99.2 4.9E-12 1.1E-16 120.2 4.2 175 15-205 20-228 (250)
238 TIGR02982 heterocyst_DevA ABC 99.2 3.4E-12 7.3E-17 119.1 3.1 165 16-200 23-219 (220)
239 PRK11176 lipid transporter ATP 99.2 3.9E-12 8.4E-17 135.2 3.8 159 16-205 361-561 (582)
240 PRK14235 phosphate transporter 99.2 3.8E-12 8.2E-17 122.4 3.3 174 16-205 37-245 (267)
241 PRK13540 cytochrome c biogenes 99.2 9.4E-12 2E-16 114.4 5.7 126 15-154 18-165 (200)
242 PRK14248 phosphate ABC transpo 99.2 6.8E-12 1.5E-16 120.6 4.9 173 17-205 40-246 (268)
243 PRK13541 cytochrome c biogenes 99.2 1E-11 2.2E-16 113.8 5.8 124 17-154 19-161 (195)
244 PRK10419 nikE nickel transport 99.2 9E-12 2E-16 119.9 5.6 172 15-205 29-235 (268)
245 PRK14259 phosphate ABC transpo 99.2 6.2E-12 1.3E-16 121.1 4.5 166 16-197 31-228 (269)
246 PRK10418 nikD nickel transport 99.2 4E-12 8.6E-17 121.3 3.1 171 16-205 21-224 (254)
247 PRK14237 phosphate transporter 99.2 4.7E-12 1E-16 121.7 3.6 174 16-205 38-245 (267)
248 TIGR01166 cbiO cobalt transpor 99.2 7.1E-12 1.5E-16 114.2 4.5 47 16-73 10-56 (190)
249 TIGR02323 CP_lyasePhnK phospho 99.2 6E-12 1.3E-16 119.9 4.1 171 16-205 21-232 (253)
250 PRK11308 dppF dipeptide transp 99.2 6E-12 1.3E-16 124.5 4.2 172 15-205 32-238 (327)
251 PRK13642 cbiO cobalt transport 99.2 3E-12 6.5E-17 123.8 2.0 171 15-205 24-223 (277)
252 PRK10261 glutathione transport 99.2 3.6E-12 7.9E-17 136.5 2.8 171 16-205 342-547 (623)
253 PRK14251 phosphate ABC transpo 99.2 9.3E-12 2E-16 118.4 5.2 174 16-205 22-229 (251)
254 TIGR01189 ccmA heme ABC export 99.2 1.2E-11 2.6E-16 113.4 5.5 124 16-153 18-164 (198)
255 PRK14239 phosphate transporter 99.2 5.9E-12 1.3E-16 119.8 3.4 172 15-205 22-230 (252)
256 TIGR02633 xylG D-xylose ABC tr 99.2 4.2E-12 9E-17 132.7 2.6 170 16-205 19-224 (500)
257 PRK11022 dppD dipeptide transp 99.2 6.4E-12 1.4E-16 124.2 3.8 176 15-205 24-237 (326)
258 cd00267 ABC_ATPase ABC (ATP-bi 99.2 2.1E-11 4.6E-16 107.6 6.7 136 16-197 17-155 (157)
259 PRK11288 araG L-arabinose tran 99.2 7.7E-12 1.7E-16 130.7 4.5 168 16-203 22-221 (501)
260 PRK11174 cysteine/glutathione 99.2 5.2E-12 1.1E-16 134.5 3.2 158 19-205 371-566 (588)
261 PRK10982 galactose/methyl gala 99.2 1.1E-11 2.4E-16 129.2 5.6 166 18-203 268-472 (491)
262 PRK13538 cytochrome c biogenes 99.2 1.1E-11 2.3E-16 114.4 4.7 127 15-155 18-168 (204)
263 PRK14257 phosphate ABC transpo 99.2 6E-12 1.3E-16 124.6 3.2 172 16-205 100-307 (329)
264 cd03223 ABCD_peroxisomal_ALDP 99.2 3.5E-11 7.5E-16 107.5 7.9 111 16-154 19-129 (166)
265 COG1136 SalX ABC-type antimicr 99.2 1.2E-11 2.6E-16 114.9 4.9 157 15-199 22-219 (226)
266 TIGR02633 xylG D-xylose ABC tr 99.2 4.9E-12 1.1E-16 132.1 2.7 167 17-203 279-484 (500)
267 PRK14274 phosphate ABC transpo 99.2 7E-12 1.5E-16 119.9 3.5 166 17-205 31-237 (259)
268 cd03236 ABC_RNaseL_inhibitor_d 99.2 8E-12 1.7E-16 119.4 3.7 37 20-67 22-58 (255)
269 PRK09580 sufC cysteine desulfu 99.2 1.4E-11 3E-16 116.8 5.2 170 15-205 18-229 (248)
270 TIGR01193 bacteriocin_ABC ABC- 99.2 4.1E-12 8.9E-17 138.1 1.6 163 16-205 492-691 (708)
271 PRK14272 phosphate ABC transpo 99.2 7.3E-12 1.6E-16 119.1 3.2 170 15-205 21-230 (252)
272 PRK15134 microcin C ABC transp 99.2 5.2E-12 1.1E-16 132.9 2.3 170 16-205 304-509 (529)
273 cd03248 ABCC_TAP TAP, the Tran 99.2 1.1E-11 2.3E-16 116.1 4.1 49 15-74 31-79 (226)
274 TIGR03375 type_I_sec_LssB type 99.2 7.2E-12 1.6E-16 135.9 3.4 162 16-205 483-682 (694)
275 COG1132 MdlB ABC-type multidru 99.2 1.1E-11 2.4E-16 131.4 4.8 164 17-206 348-547 (567)
276 PRK14256 phosphate ABC transpo 99.2 1.2E-11 2.6E-16 117.8 4.6 174 16-205 22-230 (252)
277 PRK14244 phosphate ABC transpo 99.2 7.6E-12 1.6E-16 119.1 3.1 174 16-205 23-231 (251)
278 PRK14249 phosphate ABC transpo 99.2 1.3E-11 2.8E-16 117.5 4.7 169 16-205 22-229 (251)
279 PRK11819 putative ABC transpor 99.2 6.8E-12 1.5E-16 132.7 2.9 166 15-207 24-246 (556)
280 PRK15064 ABC transporter ATP-b 99.2 3.9E-12 8.5E-17 133.8 1.1 162 17-205 338-519 (530)
281 PRK14275 phosphate ABC transpo 99.2 1.9E-11 4.1E-16 118.7 5.6 169 17-205 58-264 (286)
282 PRK14240 phosphate transporter 99.2 1.6E-11 3.5E-16 116.7 5.0 174 16-205 21-228 (250)
283 PRK09473 oppD oligopeptide tra 99.2 9.7E-12 2.1E-16 123.1 3.5 172 15-205 33-245 (330)
284 PRK09544 znuC high-affinity zi 99.2 1.9E-11 4.2E-16 116.5 5.4 162 17-204 23-202 (251)
285 PRK13409 putative ATPase RIL; 99.2 9.8E-12 2.1E-16 132.0 3.7 165 19-209 360-540 (590)
286 PRK14245 phosphate ABC transpo 99.2 9.5E-12 2E-16 118.3 3.2 171 17-205 22-228 (250)
287 PRK14253 phosphate ABC transpo 99.2 1.2E-11 2.6E-16 117.5 3.8 175 15-205 20-227 (249)
288 COG0486 ThdF Predicted GTPase 99.2 1.6E-11 3.5E-16 123.2 4.9 94 20-130 213-308 (454)
289 PRK11147 ABC transporter ATPas 99.2 7.1E-12 1.5E-16 134.5 2.5 164 17-207 338-524 (635)
290 PRK14263 phosphate ABC transpo 99.2 1.1E-11 2.3E-16 118.9 3.4 174 16-205 26-239 (261)
291 PRK15093 antimicrobial peptide 99.2 1.3E-11 2.8E-16 122.3 3.9 176 15-205 24-242 (330)
292 PRK14241 phosphate transporter 99.2 1.4E-11 3.1E-16 117.7 4.1 174 16-205 22-236 (258)
293 PRK14271 phosphate ABC transpo 99.2 1.6E-11 3.5E-16 118.6 4.4 172 16-205 39-245 (276)
294 PRK14264 phosphate ABC transpo 99.2 2.2E-11 4.7E-16 119.4 5.3 174 17-205 64-283 (305)
295 PRK14261 phosphate ABC transpo 99.2 1.3E-11 2.9E-16 117.5 3.7 174 16-205 24-231 (253)
296 PRK14243 phosphate transporter 99.2 1.5E-11 3.3E-16 118.0 4.1 173 16-204 28-241 (264)
297 PRK10790 putative multidrug tr 99.2 1.1E-11 2.4E-16 132.0 3.4 160 16-206 359-558 (592)
298 PRK14254 phosphate ABC transpo 99.2 1.9E-11 4.2E-16 118.7 4.7 174 17-205 58-263 (285)
299 cd03250 ABCC_MRP_domain1 Domai 99.2 2.1E-11 4.6E-16 112.3 4.8 44 16-70 23-66 (204)
300 TIGR01257 rim_protein retinal- 99.2 9.8E-12 2.1E-16 145.3 3.1 168 17-205 949-1143(2272)
301 PRK14252 phosphate ABC transpo 99.2 1.9E-11 4.2E-16 117.3 4.6 173 15-205 33-243 (265)
302 TIGR00958 3a01208 Conjugate Tr 99.2 1.6E-11 3.5E-16 133.4 4.6 165 16-205 499-696 (711)
303 TIGR03608 L_ocin_972_ABC putat 99.2 2E-11 4.3E-16 112.5 4.5 47 16-73 16-62 (206)
304 COG4608 AppF ABC-type oligopep 99.2 6.2E-12 1.4E-16 118.7 1.1 160 14-205 29-193 (268)
305 PRK14258 phosphate ABC transpo 99.2 1E-11 2.3E-16 118.9 2.6 177 15-205 24-239 (261)
306 PRK10636 putative ABC transpor 99.2 4.3E-12 9.4E-17 136.1 -0.2 162 17-207 331-513 (638)
307 TIGR02203 MsbA_lipidA lipid A 99.2 1.7E-11 3.7E-16 129.9 4.2 162 18-204 352-549 (571)
308 TIGR03269 met_CoM_red_A2 methy 99.2 2E-11 4.4E-16 128.1 4.6 170 17-205 303-511 (520)
309 CHL00131 ycf16 sulfate ABC tra 99.2 1.9E-11 4.1E-16 116.3 4.0 48 17-73 26-73 (252)
310 TIGR02324 CP_lyasePhnL phospho 99.2 2.9E-11 6.4E-16 112.9 5.1 44 15-69 25-68 (224)
311 COG4148 ModC ABC-type molybdat 99.2 2.8E-11 6.1E-16 113.9 4.7 154 25-206 25-213 (352)
312 KOG0059 Lipid exporter ABCA1 a 99.2 5.5E-11 1.2E-15 131.8 7.9 161 14-207 581-783 (885)
313 TIGR02868 CydC thiol reductant 99.1 5.2E-11 1.1E-15 125.2 7.3 123 19-155 356-509 (529)
314 TIGR00955 3a01204 The Eye Pigm 99.1 5E-11 1.1E-15 127.6 7.2 174 14-207 41-252 (617)
315 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 1.4E-11 2.9E-16 130.4 2.8 166 15-207 22-244 (552)
316 PRK14266 phosphate ABC transpo 99.1 1.8E-11 3.9E-16 116.4 3.3 175 15-205 20-228 (250)
317 PRK14265 phosphate ABC transpo 99.1 3.4E-11 7.5E-16 116.2 5.3 174 16-205 38-252 (274)
318 PRK10247 putative ABC transpor 99.1 5.3E-11 1.1E-15 111.5 6.4 126 15-154 24-175 (225)
319 TIGR01846 type_I_sec_HlyB type 99.1 2.4E-11 5.2E-16 131.9 4.6 158 17-205 476-674 (694)
320 PRK14236 phosphate transporter 99.1 2.4E-11 5.2E-16 117.2 4.1 173 17-205 44-250 (272)
321 PRK13539 cytochrome c biogenes 99.1 4.8E-11 1E-15 110.4 5.9 126 16-155 20-166 (207)
322 COG1101 PhnK ABC-type uncharac 99.1 3E-11 6.5E-16 110.0 4.3 167 15-203 23-230 (263)
323 PRK10261 glutathione transport 99.1 1.4E-11 3.1E-16 131.9 2.5 171 16-205 34-252 (623)
324 PRK10636 putative ABC transpor 99.1 1.5E-11 3.2E-16 132.1 2.4 45 16-71 19-63 (638)
325 TIGR01842 type_I_sec_PrtD type 99.1 2.5E-11 5.5E-16 128.1 4.1 166 16-205 336-536 (544)
326 PRK15064 ABC transporter ATP-b 99.1 1.7E-11 3.8E-16 128.9 2.8 44 16-70 19-62 (530)
327 cd03288 ABCC_SUR2 The SUR doma 99.1 4E-11 8.7E-16 114.6 5.0 167 16-205 39-237 (257)
328 PRK11160 cysteine/glutathione 99.1 2.2E-11 4.7E-16 129.4 3.4 166 18-205 360-556 (574)
329 COG4987 CydC ABC-type transpor 99.1 1.9E-11 4.2E-16 124.0 2.8 160 16-206 356-556 (573)
330 PRK13657 cyclic beta-1,2-gluca 99.1 2.6E-11 5.7E-16 129.1 4.0 165 17-205 354-552 (588)
331 PRK14255 phosphate ABC transpo 99.1 2.9E-11 6.2E-16 115.1 3.8 173 16-204 23-229 (252)
332 KOG0057 Mitochondrial Fe/S clu 99.1 2.8E-11 6E-16 123.0 3.9 163 16-206 370-569 (591)
333 TIGR01187 potA spermidine/putr 99.1 7.5E-12 1.6E-16 123.8 -0.3 158 29-205 1-184 (325)
334 COG4674 Uncharacterized ABC-ty 99.1 2.9E-11 6.2E-16 108.5 3.3 169 14-207 21-231 (249)
335 PRK15134 microcin C ABC transp 99.1 3.6E-11 7.9E-16 126.5 4.8 176 15-204 26-239 (529)
336 PRK14260 phosphate ABC transpo 99.1 1.9E-11 4.1E-16 117.0 2.1 170 15-205 24-237 (259)
337 cd03291 ABCC_CFTR1 The CFTR su 99.1 4.3E-11 9.3E-16 116.0 4.5 163 16-205 55-241 (282)
338 TIGR02204 MsbA_rel ABC transpo 99.1 2.9E-11 6.2E-16 128.4 3.5 159 17-205 359-557 (576)
339 TIGR03269 met_CoM_red_A2 methy 99.1 2.8E-11 6E-16 127.1 3.3 76 123-206 177-253 (520)
340 PRK13409 putative ATPase RIL; 99.1 3.6E-11 7.7E-16 127.7 4.1 157 20-197 95-286 (590)
341 PRK14246 phosphate ABC transpo 99.1 3.3E-11 7.2E-16 115.2 3.5 168 15-205 27-235 (257)
342 cd03289 ABCC_CFTR2 The CFTR su 99.1 5E-11 1.1E-15 115.1 4.5 164 16-205 22-219 (275)
343 PRK11819 putative ABC transpor 99.1 2.5E-11 5.5E-16 128.4 2.6 162 18-206 344-528 (556)
344 KOG0055 Multidrug/pheromone ex 99.1 3.9E-11 8.5E-16 132.2 4.1 157 17-205 372-570 (1228)
345 TIGR01192 chvA glucan exporter 99.1 3.8E-11 8.3E-16 127.8 3.7 165 17-205 354-552 (585)
346 COG4988 CydD ABC-type transpor 99.1 1.3E-10 2.8E-15 119.4 7.3 171 13-206 336-538 (559)
347 PLN03232 ABC transporter C fam 99.1 5.5E-11 1.2E-15 138.3 5.0 157 18-205 1256-1452(1495)
348 PRK10789 putative multidrug tr 99.1 5.9E-11 1.3E-15 125.9 4.6 168 16-205 333-532 (569)
349 COG1084 Predicted GTPase [Gene 99.1 9.1E-11 2E-15 112.9 5.2 64 23-103 167-230 (346)
350 TIGR03156 GTP_HflX GTP-binding 99.1 1.1E-10 2.5E-15 116.3 5.5 91 23-129 188-279 (351)
351 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 6.3E-11 1.4E-15 125.3 3.8 162 18-206 342-526 (552)
352 COG4138 BtuD ABC-type cobalami 99.1 2.6E-10 5.5E-15 100.8 6.8 169 13-205 14-215 (248)
353 PLN03130 ABC transporter C fam 99.1 9.5E-11 2.1E-15 136.8 5.3 157 18-205 1259-1455(1622)
354 COG1123 ATPase components of v 99.1 1E-10 2.2E-15 120.5 4.8 162 14-204 307-512 (539)
355 cd03290 ABCC_SUR1_N The SUR do 99.1 1.6E-10 3.4E-15 107.6 5.3 48 15-73 18-65 (218)
356 PRK11147 ABC transporter ATPas 99.1 4.9E-11 1.1E-15 128.1 2.0 44 16-70 21-64 (635)
357 COG1160 Predicted GTPases [Gen 99.0 1.2E-09 2.6E-14 109.6 11.4 90 23-129 177-271 (444)
358 PLN03140 ABC transporter G fam 99.0 2E-10 4.2E-15 132.7 6.5 173 15-206 182-422 (1470)
359 TIGR00956 3a01205 Pleiotropic 99.0 1.9E-10 4.1E-15 132.8 6.1 176 16-208 781-990 (1394)
360 COG4525 TauB ABC-type taurine 99.0 9.9E-11 2.2E-15 105.1 2.9 162 16-196 23-207 (259)
361 TIGR02857 CydD thiol reductant 99.0 2.9E-10 6.2E-15 119.6 6.8 126 16-155 340-497 (529)
362 PLN03073 ABC transporter F fam 99.0 7.1E-11 1.5E-15 127.9 2.2 161 18-206 529-709 (718)
363 PRK10938 putative molybdenum t 99.0 1.6E-10 3.5E-15 120.4 4.5 168 17-203 279-484 (490)
364 cd03238 ABC_UvrA The excision 99.0 2E-10 4.3E-15 103.6 4.5 149 15-200 12-166 (176)
365 cd01666 TGS_DRG_C TGS_DRG_C: 99.0 3E-10 6.6E-15 87.5 4.6 47 304-350 1-51 (75)
366 PRK09554 feoB ferrous iron tra 99.0 1.6E-09 3.5E-14 117.9 12.0 60 25-101 4-63 (772)
367 KOG0061 Transporter, ABC super 99.0 1.1E-09 2.3E-14 116.9 10.4 190 15-234 47-278 (613)
368 COG4619 ABC-type uncharacteriz 99.0 5.7E-10 1.2E-14 98.0 6.7 50 16-76 21-70 (223)
369 TIGR00957 MRP_assoc_pro multi 99.0 2.3E-10 5E-15 133.4 5.4 160 18-206 1306-1503(1522)
370 PRK10522 multidrug transporter 99.0 1.9E-10 4.1E-15 121.6 3.8 159 18-203 343-530 (547)
371 PF00005 ABC_tran: ABC transpo 99.0 1.5E-10 3.2E-15 99.5 2.4 47 18-75 5-51 (137)
372 PTZ00243 ABC transporter; Prov 99.0 2.5E-10 5.4E-15 133.1 4.7 166 19-206 1331-1528(1560)
373 COG0488 Uup ATPase components 99.0 1E-10 2.3E-15 121.8 1.4 150 16-191 340-506 (530)
374 KOG1423 Ras-like GTPase ERA [C 99.0 1.3E-09 2.9E-14 103.7 8.4 89 24-129 72-166 (379)
375 PRK10535 macrolide transporter 99.0 1.6E-10 3.5E-15 124.3 2.6 168 16-207 26-228 (648)
376 PRK11058 GTPase HflX; Provisio 99.0 3.1E-10 6.8E-15 115.9 4.6 87 25-129 198-287 (426)
377 KOG1191 Mitochondrial GTPase [ 99.0 4.4E-10 9.5E-15 112.9 5.3 93 19-128 263-358 (531)
378 TIGR00956 3a01205 Pleiotropic 99.0 5.4E-10 1.2E-14 129.1 6.4 176 16-206 79-295 (1394)
379 COG0444 DppD ABC-type dipeptid 98.9 3.9E-10 8.5E-15 108.8 3.5 174 13-206 20-238 (316)
380 PLN03140 ABC transporter G fam 98.9 5.3E-10 1.2E-14 129.2 4.9 175 16-208 898-1107(1470)
381 TIGR01194 cyc_pep_trnsptr cycl 98.9 2.2E-10 4.7E-15 121.3 1.3 158 17-201 361-549 (555)
382 KOG0058 Peptide exporter, ABC 98.9 1.1E-09 2.4E-14 114.9 6.0 161 16-205 486-685 (716)
383 cd01669 TGS_Ygr210_C TGS_Ygr21 98.9 1.5E-09 3.3E-14 83.9 4.7 32 316-347 23-54 (76)
384 COG4181 Predicted ABC-type tra 98.9 2.9E-09 6.2E-14 93.9 6.9 47 20-77 32-78 (228)
385 COG0396 sufC Cysteine desulfur 98.9 1E-09 2.2E-14 101.0 4.1 51 18-77 24-74 (251)
386 COG4167 SapF ABC-type antimicr 98.9 1.3E-09 2.9E-14 96.9 4.6 48 15-73 30-77 (267)
387 COG4133 CcmA ABC-type transpor 98.9 2.9E-09 6.3E-14 95.2 6.7 45 18-73 22-66 (209)
388 PRK03003 GTP-binding protein D 98.9 8.5E-09 1.9E-13 107.1 11.3 87 24-129 211-304 (472)
389 COG4618 ArpD ABC-type protease 98.9 2.5E-09 5.5E-14 108.1 6.8 154 18-207 356-556 (580)
390 cd04164 trmE TrmE (MnmE, ThdF, 98.9 2.3E-09 5E-14 92.9 5.0 89 24-129 1-91 (157)
391 cd01868 Rab11_like Rab11-like. 98.9 1.9E-08 4.1E-13 88.6 10.8 82 25-128 4-85 (165)
392 PRK00093 GTP-binding protein D 98.9 1.1E-08 2.3E-13 105.1 10.5 90 23-129 172-266 (435)
393 TIGR01271 CFTR_protein cystic 98.9 1.7E-09 3.8E-14 125.8 4.9 160 19-205 1240-1434(1490)
394 TIGR03594 GTPase_EngA ribosome 98.8 1.4E-08 3E-13 104.0 10.9 89 24-129 172-265 (429)
395 PTZ00265 multidrug resistance 98.8 2.7E-09 5.9E-14 123.7 6.2 47 16-73 403-450 (1466)
396 COG1123 ATPase components of v 98.8 1.7E-09 3.7E-14 111.5 3.9 171 14-207 25-240 (539)
397 cd01878 HflX HflX subfamily. 98.8 2.8E-09 6.1E-14 97.8 5.0 87 25-129 42-131 (204)
398 TIGR00450 mnmE_trmE_thdF tRNA 98.8 2.7E-09 5.9E-14 109.6 5.2 93 20-129 199-293 (442)
399 PTZ00265 multidrug resistance 98.8 4E-09 8.7E-14 122.3 6.8 176 17-205 1187-1446(1466)
400 PLN03073 ABC transporter F fam 98.8 9.6E-10 2.1E-14 119.1 0.8 72 124-207 354-427 (718)
401 PRK05291 trmE tRNA modificatio 98.8 4.6E-09 9.9E-14 108.3 5.7 92 21-129 212-305 (449)
402 PRK09518 bifunctional cytidyla 98.8 2.4E-08 5.2E-13 108.6 11.0 86 25-129 451-543 (712)
403 TIGR01271 CFTR_protein cystic 98.8 2.7E-09 5.9E-14 124.2 3.8 159 19-206 447-631 (1490)
404 cd01852 AIG1 AIG1 (avrRpt2-ind 98.8 7.7E-09 1.7E-13 94.7 5.5 60 26-102 2-63 (196)
405 cd01897 NOG NOG1 is a nucleola 98.8 1.4E-08 2.9E-13 89.8 6.8 58 26-100 2-59 (168)
406 TIGR00957 MRP_assoc_pro multi 98.8 5E-09 1.1E-13 122.3 4.5 156 18-206 658-845 (1522)
407 COG0218 Predicted GTPase [Gene 98.8 1.5E-07 3.3E-12 85.4 13.0 58 23-100 23-82 (200)
408 cd04142 RRP22 RRP22 subfamily. 98.7 1.3E-07 2.8E-12 86.9 12.8 88 26-128 2-90 (198)
409 TIGR03594 GTPase_EngA ribosome 98.7 6.9E-09 1.5E-13 106.3 4.6 87 26-129 1-89 (429)
410 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.7 1.5E-07 3.3E-12 83.0 12.5 82 25-128 3-84 (166)
411 COG4172 ABC-type uncharacteriz 98.7 9E-09 1.9E-13 101.6 4.6 162 16-207 305-512 (534)
412 KOG0062 ATPase component of AB 98.7 8.1E-09 1.8E-13 104.5 3.7 71 125-207 209-281 (582)
413 cd01866 Rab2 Rab2 subfamily. 98.7 2.2E-07 4.8E-12 82.5 12.3 82 25-128 5-86 (168)
414 TIGR00437 feoB ferrous iron tr 98.7 4E-08 8.7E-13 104.5 8.8 54 31-101 1-54 (591)
415 TIGR00954 3a01203 Peroxysomal 98.7 1.3E-08 2.8E-13 109.9 5.1 42 18-70 472-513 (659)
416 cd01879 FeoB Ferrous iron tran 98.7 9.8E-09 2.1E-13 89.4 3.4 82 29-128 1-84 (158)
417 cd04119 RJL RJL (RabJ-Like) su 98.7 1.9E-07 4.2E-12 81.8 11.4 81 26-128 2-82 (168)
418 cd04145 M_R_Ras_like M-Ras/R-R 98.7 3.4E-07 7.4E-12 80.2 13.0 81 25-128 3-83 (164)
419 KOG0054 Multidrug resistance-a 98.7 1.2E-08 2.5E-13 115.2 4.4 50 17-77 1159-1208(1381)
420 KOG0055 Multidrug/pheromone ex 98.7 1.5E-08 3.2E-13 112.3 4.9 159 16-205 1008-1207(1228)
421 PRK00093 GTP-binding protein D 98.7 2.3E-08 5.1E-13 102.6 5.5 89 25-130 2-92 (435)
422 COG4598 HisP ABC-type histidin 98.7 2.7E-08 5.9E-13 88.5 5.0 44 19-73 27-70 (256)
423 PRK03003 GTP-binding protein D 98.6 2.8E-08 6.1E-13 103.2 5.7 88 25-129 39-128 (472)
424 cd04171 SelB SelB subfamily. 98.6 2.3E-08 5E-13 87.5 4.2 81 25-128 1-84 (164)
425 cd01894 EngA1 EngA1 subfamily. 98.6 1.5E-08 3.2E-13 87.9 2.7 84 28-128 1-86 (157)
426 cd01895 EngA2 EngA2 subfamily. 98.6 6.7E-08 1.5E-12 84.9 6.9 88 25-129 3-95 (174)
427 cd01867 Rab8_Rab10_Rab13_like 98.6 4.5E-07 9.8E-12 80.3 12.2 82 25-128 4-85 (167)
428 cd04163 Era Era subfamily. Er 98.6 2.8E-08 6.1E-13 86.4 4.4 88 24-128 3-92 (168)
429 PTZ00243 ABC transporter; Prov 98.6 2.8E-08 6.2E-13 116.1 5.7 160 19-206 681-865 (1560)
430 PLN03130 ABC transporter C fam 98.6 2E-08 4.3E-13 117.7 4.1 154 18-206 637-823 (1622)
431 cd01862 Rab7 Rab7 subfamily. 98.6 3.9E-07 8.5E-12 80.5 11.5 81 26-128 2-82 (172)
432 KOG0056 Heavy metal exporter H 98.6 9E-08 1.9E-12 96.5 8.1 71 18-99 558-635 (790)
433 cd04136 Rap_like Rap-like subf 98.6 7.5E-07 1.6E-11 78.0 12.4 81 25-128 2-82 (163)
434 smart00173 RAS Ras subfamily o 98.6 8.5E-07 1.9E-11 77.9 12.7 80 26-128 2-81 (164)
435 cd04112 Rab26 Rab26 subfamily. 98.6 7.5E-07 1.6E-11 81.0 12.5 81 26-128 2-83 (191)
436 cd04138 H_N_K_Ras_like H-Ras/N 98.6 9.5E-07 2.1E-11 76.9 12.6 81 25-128 2-82 (162)
437 cd04109 Rab28 Rab28 subfamily. 98.6 5.8E-07 1.3E-11 83.5 11.8 82 26-128 2-83 (215)
438 cd01861 Rab6 Rab6 subfamily. 98.6 6.6E-08 1.4E-12 84.6 5.1 81 26-128 2-82 (161)
439 PLN03232 ABC transporter C fam 98.6 3.4E-08 7.3E-13 115.3 4.2 154 18-206 637-823 (1495)
440 cd01865 Rab3 Rab3 subfamily. 98.6 6.1E-07 1.3E-11 79.3 11.3 82 25-128 2-83 (165)
441 COG4161 ArtP ABC-type arginine 98.6 5.8E-08 1.3E-12 85.0 4.5 160 21-205 25-224 (242)
442 PLN03108 Rab family protein; P 98.6 7.4E-07 1.6E-11 82.5 12.1 82 25-128 7-88 (210)
443 cd01863 Rab18 Rab18 subfamily. 98.6 1E-06 2.2E-11 77.2 12.4 81 26-128 2-82 (161)
444 cd04107 Rab32_Rab38 Rab38/Rab3 98.6 8E-07 1.7E-11 81.5 12.2 81 26-128 2-83 (201)
445 cd04178 Nucleostemin_like Nucl 98.5 1.3E-07 2.9E-12 85.0 6.4 56 23-98 116-172 (172)
446 cd00880 Era_like Era (E. coli 98.5 1.1E-07 2.5E-12 81.4 5.5 85 29-129 1-86 (163)
447 PRK09866 hypothetical protein; 98.5 7.3E-07 1.6E-11 93.5 12.2 35 25-59 70-105 (741)
448 KOG0927 Predicted transporter 98.5 3.3E-08 7.2E-13 100.7 2.3 66 130-207 238-305 (614)
449 cd04175 Rap1 Rap1 subgroup. T 98.5 2E-06 4.2E-11 75.7 13.1 81 25-128 2-82 (164)
450 KOG0410 Predicted GTP binding 98.5 4.7E-08 1E-12 93.9 2.8 90 23-130 177-269 (410)
451 COG4778 PhnL ABC-type phosphon 98.5 2.2E-07 4.9E-12 82.0 6.7 44 16-70 29-72 (235)
452 cd04176 Rap2 Rap2 subgroup. T 98.5 2.5E-06 5.4E-11 74.9 13.4 81 25-128 2-82 (163)
453 PRK09518 bifunctional cytidyla 98.5 9.1E-08 2E-12 104.2 4.7 88 25-129 276-365 (712)
454 cd04122 Rab14 Rab14 subfamily. 98.5 1.4E-06 3E-11 77.0 11.3 80 25-128 3-84 (166)
455 cd04146 RERG_RasL11_like RERG/ 98.5 2.9E-06 6.2E-11 74.8 13.2 81 26-128 1-81 (165)
456 cd01858 NGP_1 NGP-1. Autoanti 98.5 2.9E-07 6.4E-12 81.1 6.6 55 24-98 102-157 (157)
457 KOG0065 Pleiotropic drug resis 98.5 6.6E-07 1.4E-11 99.7 10.6 178 17-217 810-1027(1391)
458 cd04127 Rab27A Rab27a subfamil 98.5 2E-06 4.4E-11 76.8 12.1 25 25-49 5-29 (180)
459 cd04116 Rab9 Rab9 subfamily. 98.5 1.7E-06 3.6E-11 76.6 11.3 60 25-99 6-65 (170)
460 cd04124 RabL2 RabL2 subfamily. 98.5 2.2E-06 4.7E-11 75.6 11.9 79 26-128 2-82 (161)
461 PRK04213 GTP-binding protein; 98.5 2.2E-07 4.7E-12 85.0 5.7 55 24-99 9-63 (201)
462 cd01855 YqeH YqeH. YqeH is an 98.5 2.1E-07 4.5E-12 84.7 5.3 56 23-98 126-190 (190)
463 cd01849 YlqF_related_GTPase Yl 98.5 3.6E-07 7.9E-12 80.4 6.6 56 23-98 99-155 (155)
464 cd00879 Sar1 Sar1 subfamily. 98.4 2.4E-07 5.3E-12 83.7 5.6 79 23-128 18-96 (190)
465 cd04160 Arfrp1 Arfrp1 subfamil 98.4 1.8E-07 4E-12 82.4 4.6 79 26-128 1-83 (167)
466 COG4107 PhnK ABC-type phosphon 98.4 1.2E-06 2.5E-11 77.8 9.2 42 18-70 26-67 (258)
467 cd03280 ABC_MutS2 MutS2 homolo 98.4 5.7E-07 1.2E-11 82.7 7.5 30 16-45 19-49 (200)
468 KOG0927 Predicted transporter 98.4 2E-07 4.3E-12 95.1 4.7 37 21-68 413-449 (614)
469 cd01853 Toc34_like Toc34-like 98.4 4.5E-07 9.7E-12 86.4 6.8 64 21-101 28-92 (249)
470 cd04144 Ras2 Ras2 subfamily. 98.4 3E-06 6.4E-11 77.0 12.0 80 26-128 1-80 (190)
471 cd04108 Rab36_Rab34 Rab34/Rab3 98.4 3.4E-06 7.4E-11 75.3 12.1 81 26-128 2-82 (170)
472 cd04155 Arl3 Arl3 subfamily. 98.4 2.6E-07 5.7E-12 82.0 4.8 74 24-128 14-91 (173)
473 KOG0054 Multidrug resistance-a 98.4 2E-07 4.3E-12 105.5 4.8 163 17-207 540-727 (1381)
474 cd04177 RSR1 RSR1 subgroup. R 98.4 5.3E-06 1.2E-10 73.4 13.1 24 25-48 2-25 (168)
475 smart00178 SAR Sar1p-like memb 98.4 3.4E-07 7.4E-12 82.9 5.5 84 19-129 12-95 (184)
476 cd01888 eIF2_gamma eIF2-gamma 98.4 7.5E-07 1.6E-11 82.1 7.7 23 26-48 2-24 (203)
477 cd04159 Arl10_like Arl10-like 98.4 3.5E-07 7.6E-12 78.9 5.2 76 27-128 2-77 (159)
478 TIGR03598 GTPase_YsxC ribosome 98.4 2.2E-07 4.7E-12 83.7 3.8 59 23-101 17-77 (179)
479 cd04143 Rhes_like Rhes_like su 98.4 8.1E-06 1.8E-10 77.7 14.5 80 26-128 2-81 (247)
480 cd01887 IF2_eIF5B IF2/eIF5B (i 98.4 3.9E-07 8.5E-12 80.2 5.0 83 26-129 2-84 (168)
481 cd01892 Miro2 Miro2 subfamily. 98.4 4.9E-06 1.1E-10 74.2 11.9 83 24-128 4-87 (169)
482 cd03270 ABC_UvrA_I The excisio 98.4 3E-07 6.5E-12 86.3 4.1 32 13-44 10-42 (226)
483 cd04110 Rab35 Rab35 subfamily. 98.4 5.9E-06 1.3E-10 75.7 12.6 80 25-128 7-88 (199)
484 cd04111 Rab39 Rab39 subfamily. 98.4 5.7E-06 1.2E-10 76.7 12.4 82 25-128 3-85 (211)
485 cd04139 RalA_RalB RalA/RalB su 98.4 7.6E-06 1.6E-10 71.4 12.6 58 26-99 2-59 (164)
486 TIGR00231 small_GTP small GTP- 98.3 2.8E-07 6.1E-12 78.9 3.1 59 25-98 2-60 (161)
487 cd04148 RGK RGK subfamily. Th 98.3 8.5E-06 1.8E-10 76.1 13.2 78 26-128 2-82 (221)
488 PRK09563 rbgA GTPase YlqF; Rev 98.3 1.1E-06 2.3E-11 85.6 7.3 61 22-102 119-180 (287)
489 cd00154 Rab Rab family. Rab G 98.3 6E-07 1.3E-11 77.4 4.8 81 26-128 2-82 (159)
490 smart00175 RAB Rab subfamily o 98.3 6.3E-07 1.4E-11 78.4 4.8 81 26-128 2-82 (164)
491 COG3596 Predicted GTPase [Gene 98.3 3.5E-07 7.5E-12 86.5 3.2 90 23-129 38-128 (296)
492 PTZ00369 Ras-like protein; Pro 98.3 1.1E-05 2.5E-10 73.1 13.1 81 25-128 6-86 (189)
493 PRK15467 ethanolamine utilizat 98.3 4.7E-07 1E-11 80.1 3.6 73 26-129 3-75 (158)
494 PRK00454 engB GTP-binding prot 98.3 3.5E-07 7.6E-12 82.9 2.7 58 23-100 23-82 (196)
495 cd04104 p47_IIGP_like p47 (47- 98.3 3.4E-07 7.4E-12 84.0 2.6 24 25-48 2-25 (197)
496 TIGR00991 3a0901s02IAP34 GTP-b 98.3 8.7E-07 1.9E-11 86.3 5.4 61 24-101 38-99 (313)
497 cd00877 Ran Ran (Ras-related n 98.3 1.1E-05 2.4E-10 71.6 12.2 22 26-47 2-23 (166)
498 TIGR02858 spore_III_AA stage I 98.3 2E-06 4.3E-11 82.8 7.5 38 25-73 112-149 (270)
499 COG5265 ATM1 ABC-type transpor 98.3 9.7E-07 2.1E-11 87.9 5.4 55 20-85 285-346 (497)
500 TIGR03596 GTPase_YlqF ribosome 98.3 1.6E-06 3.6E-11 83.8 6.9 61 22-102 116-177 (276)
No 1
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=100.00 E-value=1.4e-81 Score=618.11 Aligned_cols=362 Identities=45% Similarity=0.744 Sum_probs=337.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
+.++||||.||||||||||+|||..+.+++|||||++|+.|.+.+++.+++.++..+.|++.++.+++++|+||+..+.+
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 57899999999999999999999998889999999999999999999888999999999999999999999999999888
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHH
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKI 183 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~ 183 (406)
.+.+++++|+++++.+|+++||||+|.++++.+..+..||.+|++.++.|+.++|++.++++|+++.+....+. .....
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~~-~~~~~ 160 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGD-KEAKA 160 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc-hhHHH
Confidence 88889999999999999999999999999999988899999999999999999999999999999987654322 23456
Q ss_pred HHHHHHHHHHHhhCCCccccCCCChhHHHHHHHhhhhccccEEeeeccchhhhhhhhccChhhHHHHHHhhCCCeEEEec
Q 015465 184 EHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFS 263 (406)
Q Consensus 184 v~~l~~~i~~~L~~g~~~~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~~~~~v~~i~~~~~~~~~~~~v~~s 263 (406)
...++.+|...|++|++++...|++++++.++.+.+++.||++|++|+++.++. .++++++++.+++.+. +.+++++|
T Consensus 161 e~~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~~~~-~~~~~~~~i~~~~~~~-~~~~i~~s 238 (364)
T PRK09601 161 ELELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDEDDLA-DGNPYVKKVREIAAKE-GAEVVVIC 238 (364)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCccccc-cccHHHHHHHHHHHHc-CCeEEEEE
Confidence 778899999999999998888999999999999999999999999999987653 3466888999988764 67899999
Q ss_pred cccchhhcCCChhHHHHHHHhcc-ccccHHHHHHHHHcccCcEEEeecCCCCeeeEEecCCCCcchhcccchhhhhhccE
Q 015465 264 CALERNLADMPPDEAAKYCEENK-VQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFI 342 (406)
Q Consensus 264 a~~E~~l~~l~~~~~~~~~~~~~-~~~~l~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~aAg~IHsD~~kgFi 342 (406)
|+.|.+|++|+++++.+||+++| .+++++++++++|++||||+|||+|++|+|||||++||||+||||+|||||+||||
T Consensus 239 a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~~evrawti~~GstA~~aAg~IHsD~~kgFI 318 (364)
T PRK09601 239 AKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEKGFI 318 (364)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHhhccE
Confidence 99999999998889999999999 78999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchhhhcCChHHHhhcCceeeeeeeeeeeccCCCccccCCCcEEEEEEEe
Q 015465 343 CAEVMKFDDLKELGSEPAVKVNVLISRFIIIISILSCPSCHCKSTEFACHWLRIVL 398 (406)
Q Consensus 343 ~Aev~~~~d~~~~g~~~~~k~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
||||++|+||+++||++.||++||+|+.|+. |..++||+++||||+
T Consensus 319 ~AeVi~~~d~~~~g~~~~ak~~gk~rleGkd----------Y~v~DGDIi~f~fn~ 364 (364)
T PRK09601 319 RAEVISYDDLIEYGSEAGAKEAGKVRLEGKD----------YIVQDGDVMHFRFNV 364 (364)
T ss_pred EEEEecHHHHHHcCCHHHHHHccceeccCCc----------eEecCCCEEEEEcCC
Confidence 9999999999999999999999999999999 999999999999995
No 2
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=4.5e-81 Score=621.18 Aligned_cols=376 Identities=59% Similarity=1.005 Sum_probs=346.9
Q ss_pred CcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEE
Q 015465 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (406)
Q Consensus 13 ~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~l 92 (406)
++..++++...+.++||||.||+|||||||+||+..+.+++|||||++|+.|.+.+++.+++.++.++.|++.++.++++
T Consensus 10 ~~~~~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~l 89 (390)
T PTZ00258 10 EKKVLLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDI 89 (390)
T ss_pred ccchhhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEE
Confidence 47778888899999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred EeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 015465 93 HDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKS 172 (406)
Q Consensus 93 vD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~ 172 (406)
+|+||+..+.+.+.+++++|++.++.+|+++||+|+|.++++.|.++..||..+++.++.|+.++|+..++++++++.+.
T Consensus 90 vDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~ 169 (390)
T PTZ00258 90 TDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKK 169 (390)
T ss_pred EECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999888888899999999999999999999999999999999999999999999999999999999999988865
Q ss_pred hhhc-cccchHHHHHHHHHHHHHhhCCCccccCCCChhHHHHHHHhhhhccccEEeeeccchhhhhhhhccChhhHHHHH
Q 015465 173 MKRS-NDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWV 251 (406)
Q Consensus 173 ~~~~-~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~~~~~v~~i~~~~ 251 (406)
.... ..........++++|...|++|.+++..+|+++|.+.++.+.+++.||++|++|+++.++....+++++++++++
T Consensus 170 ~~~~~~~~~~~~~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~ 249 (390)
T PTZ00258 170 RKKKKKKKEEKVELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWV 249 (390)
T ss_pred hccccchhhHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHHH
Confidence 3211 112334567889999999999999988899999999999999999999999999997665223455788888877
Q ss_pred HhhCCCeEEEeccccchhhcCC-ChhHHHHHHHhcc-ccccHHHHHHHHHcccCcEEEeecCCCCeeeEEecCCCCcchh
Q 015465 252 QEHGGEQIIPFSCALERNLADM-PPDEAAKYCEENK-VQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQA 329 (406)
Q Consensus 252 ~~~~~~~~v~~sa~~E~~l~~l-~~~~~~~~~~~~~-~~~~l~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~a 329 (406)
+...+.+++++||+.|.+|++| +++++.+||+++| .++|+++|++++|++||||+|||+||||+|||||++||||+||
T Consensus 250 ~~~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g~~e~raw~i~~Gsta~~a 329 (390)
T PTZ00258 250 GEKGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAGPDEVRCWTIQKGTKAPQA 329 (390)
T ss_pred HhcCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCCCCceeEEEeCCCCcHHHH
Confidence 6542468999999999999999 9999999999999 7999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhccEEEEEeccchhhhcCChHHHhhcCceeeeeeeeeeeccCCCccccCCCcEEEEEEEe
Q 015465 330 AGTIHTDFERGFICAEVMKFDDLKELGSEPAVKVNVLISRFIIIISILSCPSCHCKSTEFACHWLRIVL 398 (406)
Q Consensus 330 Ag~IHsD~~kgFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
||+|||||+|||||||||+|+||+++||+++||++||+|+.|+. |..++||+++||||+
T Consensus 330 Ag~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkd----------Yiv~DGDIi~f~fnv 388 (390)
T PTZ00258 330 AGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKD----------YVVQDGDIIFFKFNV 388 (390)
T ss_pred HhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCc----------eEecCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999 999999999999997
No 3
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=1.1e-80 Score=588.73 Aligned_cols=383 Identities=58% Similarity=0.910 Sum_probs=358.2
Q ss_pred CCCccccCcCCCCcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhc
Q 015465 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF 80 (406)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~ 80 (406)
|||++ .. +.+++++||......+||||.||+||||+||+||......+||||||++|+.+.|.+++.|++.++..|
T Consensus 1 ~~~kk-~~---~~~~~~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y 76 (391)
T KOG1491|consen 1 MPPKK-DI---EEKKVLLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIY 76 (391)
T ss_pred CCccc-cc---ccccccccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhc
Confidence 77774 44 468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHH
Q 015465 81 KPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (406)
Q Consensus 81 ~p~~~~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~ 160 (406)
.|+..+++.++++|++|+.++++.|.++||+||+++|.+|+|+||||||.+.++.|+.+++||.+|++++++|+.++|++
T Consensus 77 ~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e 156 (391)
T KOG1491|consen 77 GPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLE 156 (391)
T ss_pred CCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccc----cchHHHHHHHHHHHHHhhCCCc--cccCCCChhHHHHHHHhhhhccccEEeeeccchh
Q 015465 161 FMERRIEDVEKSMKRSND----KQLKIEHELCQRVKAWLQDGKD--VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEK 234 (406)
Q Consensus 161 ~l~k~l~~~~~~~~~~~~----h~~~~v~~l~~~i~~~L~~g~~--~~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~ 234 (406)
+++++++++.+...++.. ...+....+++++.+.|.+|+. .+.+.|++++++++...++++.||++|++|+++.
T Consensus 157 ~l~k~~e~~~k~~~~~~~~~~~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~ 236 (391)
T KOG1491|consen 157 FLEKRLEKLEKKHKRTKSNLETKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEH 236 (391)
T ss_pred HHHHHHHHHhhhhhcccCcHHHHHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhhhhhcCceEEEEecCcc
Confidence 999999998876655442 4455567789999887765544 3448999999999999999999999999999999
Q ss_pred hhhhhhccChhhHHHHHHhhC-CCeEEEeccccchhhcCCChhHHHHHHHhccccccHHHHHHHHHcccCcEEEeecCCC
Q 015465 235 DYQRKKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPD 313 (406)
Q Consensus 235 ~~~~~~~~~v~~i~~~~~~~~-~~~~v~~sa~~E~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~L~li~~fT~g~~ 313 (406)
++..++++++.++++|.++.. +..++++|+..|.++..+.+||+.+|+++.+..|+|+++|.+.|+.|+||+|||+||+
T Consensus 237 dy~r~knk~l~~i~~w~~~~~~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~s~L~~iI~~~~~~L~li~fFt~G~~ 316 (391)
T KOG1491|consen 237 DYARKKNKKLPKIKEWVDEVSPGDVVIVFSAAFESQLFELYEEEAVKELEDLGDSSALPKIIKTGYSALNLIVFFTCGED 316 (391)
T ss_pred hhhhHHHHHHhhhhhhhhccCCCCeEEEehHHHHHHhhccCHHHHHHHHHhcccccchhHHHHHHHHhhCceEEEeeCCc
Confidence 987788889999999998754 6789999999999999999999999999999779999999999999999999999999
Q ss_pred CeeeEEecCCCCcchhcccchhhhhhccEEEEEeccchhhhcCChHHHhhcCceeeeeeeeeeeccCCCccccCCCcEEE
Q 015465 314 EVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKVNVLISRFIIIISILSCPSCHCKSTEFACHW 393 (406)
Q Consensus 314 e~raw~i~~gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
|||+|||++|++||+|||+|||||+++||.|+|++|+||..+||+.++|.+||.|+.|.. |..++||+++
T Consensus 317 eV~~WtIr~gt~ap~aagvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~----------yiVedGDIi~ 386 (391)
T KOG1491|consen 317 EVRAWTIRKGTKAPQAAGVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKE----------YIVEDGDIIF 386 (391)
T ss_pred hheeeehhhccccccccceeeehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCce----------eeecCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEE
Q 015465 394 LRIV 397 (406)
Q Consensus 394 ~~~~ 397 (406)
||||
T Consensus 387 FK~~ 390 (391)
T KOG1491|consen 387 FKFN 390 (391)
T ss_pred Eeec
Confidence 9997
No 4
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=100.00 E-value=2.7e-80 Score=609.14 Aligned_cols=362 Identities=37% Similarity=0.549 Sum_probs=335.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
++.+||||.||+|||||||+||+... ++++|||||++|+.|.+.++|.+++.++.+|.|++..+..++++|+||+..++
T Consensus 2 ~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 2 GLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred CceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 47899999999999999999999998 88999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchH
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK 182 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~ 182 (406)
+++.+++++|+++++.+|+++||+|+|.++++.|..+..||.+++.+++.|+.++|+..++++++++.+.... . ....
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~-~-k~~~ 159 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEG-G-KDKK 159 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-c-hhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876432 1 3445
Q ss_pred HHHHHHHHHHHHhhCCCccccCCCChhHHHHHHHhhhhccccEEeeeccchhhhhhhhccChhhHHHHHHhh--CCCeEE
Q 015465 183 IEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEH--GGEQII 260 (406)
Q Consensus 183 ~v~~l~~~i~~~L~~g~~~~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~~~~~v~~i~~~~~~~--~~~~~v 260 (406)
.+..++.++..+|++|++++...+++++..+++.+++++.||++|++|++++++..+++.+.+.++ |+... .+..++
T Consensus 160 ~e~~ll~~~~~~Le~~~~~r~~~~~~ee~~~~~~~~llt~Kp~~~v~N~~e~~~~~~n~~~~~~~~-~~~~~~~~~~~~~ 238 (368)
T TIGR00092 160 EELLLLEIILPLLNGGQMARHVDLSKEELILIKSLNLLTKKPIILIANVSEDYLRNLNNNYLLIVE-WIAAYSKGDPKVV 238 (368)
T ss_pred HHHHHHHHHHHHHhCCCeeccCCCCHHHHHHHHhCcchhhCCEEEEEECCHHHhhhcccHHHHHHH-HHhhcCcCCCeEE
Confidence 678899999999999999987778888889999999999999999999998776422244555555 77663 256799
Q ss_pred EeccccchhhcCCChhHHHHHHHhcc-ccc-cHHHHHHHHHcccCcEEEeecCCCCeeeEEecCCCCcchhcccchhhhh
Q 015465 261 PFSCALERNLADMPPDEAAKYCEENK-VQS-ALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFE 338 (406)
Q Consensus 261 ~~sa~~E~~l~~l~~~~~~~~~~~~~-~~~-~l~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~aAg~IHsD~~ 338 (406)
++||..|.++++|+++|+.+|++++| .+| ++++|++..|++|+|++|||+||+|+|||||++|+||+||||+|||||+
T Consensus 239 ~~~a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~~ii~~~y~lL~L~sFfT~g~~EvRaWti~~G~~Ap~AAG~IHsDfe 318 (368)
T TIGR00092 239 FVCALEESELSELDDEERQEFLQKLGLTESAGLNIIIRARYKLLLLSFFFTGGKEEVRAWTRKGGWAAPQAAGIIHTDFE 318 (368)
T ss_pred EeEHHHHHHHhcCCHHHHHHHHHHcCCcccchHHHHHHHHHHHhCeeEEEcCCCceeEEeecCCCCchhHhcCCcccccc
Confidence 99999999999999999999999999 788 9999999999999999999999999999999999999999999999999
Q ss_pred hccEEEEEeccchhhhcCChHHHhhcCceeeeeeeeeeeccCCCccccCCCcEEEEEEEe
Q 015465 339 RGFICAEVMKFDDLKELGSEPAVKVNVLISRFIIIISILSCPSCHCKSTEFACHWLRIVL 398 (406)
Q Consensus 339 kgFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
||||||||++|+||+++||+++||++||+|+.|+. |..|+||+++||||+
T Consensus 319 kgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~----------YivqDGDIi~f~fnv 368 (368)
T TIGR00092 319 TGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKY----------YVVDDGDVLFFAFNV 368 (368)
T ss_pred cCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCe----------EEeeCCeEEEEecCC
Confidence 99999999999999999999999999999999999 999999999999995
No 5
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-78 Score=587.00 Aligned_cols=364 Identities=43% Similarity=0.698 Sum_probs=338.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhcc-CCCCcCceeEEEeecccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFK-PKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~-p~~~~~~~i~lvD~~gl~~~ 101 (406)
++..+||||.||+|||||||+||...+.++||||||++|+.|.+.+++.++..++..+. |++.++..++++|++|++++
T Consensus 1 m~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 1 MSLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CCceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 35789999999999999999999999888999999999999999999999999999999 68888999999999999999
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc--cc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN--DK 179 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~--~h 179 (406)
+++|+++||+||.++|.+|+|+||||||++.++.|+.+.+||..|+++++.||++||++.++++|+++.+....++ .+
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~k 160 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDK 160 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998775443 25
Q ss_pred chHHHHHHHHHHHHHhhCCCcccc---CCCChhHHHHHHHhhhhccccEEeeeccchhhhhhhhccChhhHHHHHHhhCC
Q 015465 180 QLKIEHELCQRVKAWLQDGKDVRL---GDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGG 256 (406)
Q Consensus 180 ~~~~v~~l~~~i~~~L~~g~~~~~---~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~~~~~v~~i~~~~~~~~~ 256 (406)
...+...++..+...|.+|++.+. ..|++++...++.+.+++.||++|++|++|.+... .++++++++++.+.. +
T Consensus 161 ~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~-~n~~~~~i~~~~~~~-~ 238 (372)
T COG0012 161 ELKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLAN-LNEYVKRLKELAAKE-N 238 (372)
T ss_pred HHHHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccc-hhHHHHHHHHHhhhc-C
Confidence 666777889999899999988753 46999999999999999999999999999987643 255799999987764 5
Q ss_pred CeEEEeccccchhhcCCCh-hHHHHHHHhcc-ccccHHHHHHHHHcccCcEEEeecCCCCeeeEEecCCCCcchhcccch
Q 015465 257 EQIIPFSCALERNLADMPP-DEAAKYCEENK-VQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIH 334 (406)
Q Consensus 257 ~~~v~~sa~~E~~l~~l~~-~~~~~~~~~~~-~~~~l~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~aAg~IH 334 (406)
.++|++||+.|.+|++|++ +++.+|+..+| .+++|++++.+.|.+|||++|||+|++|+|+||+++|+||+|+||.||
T Consensus 239 ~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~ft~g~~evrawti~~g~kap~aaG~Ih 318 (372)
T COG0012 239 AEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTIKDGSKAPDAAGVIH 318 (372)
T ss_pred CcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccchhHHHhhcCCeEEEEEeccCCcccccCCccc
Confidence 7899999999999999987 88999999999 689999999999999999999999999999999999999999999999
Q ss_pred hhhhhccEEEEEeccchhhhcCChHHHhhcCceeeeeeeeeeeccCCCccccCCCcEEEEEEEe
Q 015465 335 TDFERGFICAEVMKFDDLKELGSEPAVKVNVLISRFIIIISILSCPSCHCKSTEFACHWLRIVL 398 (406)
Q Consensus 335 sD~~kgFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
|||++|||+|+|++|+||+.+||+..||++||+|+.|+. |..|+||+++||||+
T Consensus 319 ~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~Gkd----------Y~vqdGDVi~Fk~~~ 372 (372)
T COG0012 319 PDFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKD----------YIVQDGDVIHFKFNV 372 (372)
T ss_pred cchhhccccceEeeHHHHHhcCcHHHHHHhcceeecccc----------ceecCCCEEEEEecC
Confidence 999999999999999999999999999999999999999 999999999999985
No 6
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=3.8e-51 Score=410.85 Aligned_cols=334 Identities=25% Similarity=0.338 Sum_probs=265.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcC----Ccchhhhhhhcc---CCCCcCceeEEEeecc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP----DERFEWLCQLFK---PKSAVPAFLEIHDIAG 97 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~----g~~~~~l~~~~~---p~~~~~~~i~lvD~~g 97 (406)
.++||||.||+|||||||+||+....+++|||||++|+.|.+.+. +.++..++.... +....+..++++|+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 479999999999999999999998888999999999999998874 345444332222 2235567799999999
Q ss_pred ccccccCCCCCcchhhhhHHhhhchhhhhcccCCC----ceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 015465 98 LVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDP----DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM 173 (406)
Q Consensus 98 l~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~----~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~ 173 (406)
+..+.+++.+++++|++.++.+|+++||+|+|.++ .+.+ ++..||.+++++++.||.++|++.+++++.++.+..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~-~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~ 160 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVE-PGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKA 160 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccC-CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99998888899999999999999999999999543 2334 778899999999999999999999999998887654
Q ss_pred hhccc-cc--hHHHHHHH----HHHHHHhh-CCCccccCCCChhHHHHHHHhhhhccccEEeeeccchhhhhhhhccChh
Q 015465 174 KRSND-KQ--LKIEHELC----QRVKAWLQ-DGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLP 245 (406)
Q Consensus 174 ~~~~~-h~--~~~v~~l~----~~i~~~L~-~g~~~~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~~~~~v~ 245 (406)
..+.. .. ......++ ++|..+|+ .|.+.+...|+++++..++.+.+++.||++|++|+.|... .+.++.
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~---~~~~l~ 237 (396)
T PRK09602 161 QAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPP---AEENIE 237 (396)
T ss_pred hcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhccc---chHHHH
Confidence 32210 00 11111222 66888887 5777776789999999999998899999999999997421 122344
Q ss_pred hHHHHHHhhCCCeEEEeccccchhhcC---------------------CChhHH------HHHHHhccccccHHHHH-HH
Q 015465 246 KIHAWVQEHGGEQIIPFSCALERNLAD---------------------MPPDEA------AKYCEENKVQSALPKII-KT 297 (406)
Q Consensus 246 ~i~~~~~~~~~~~~v~~sa~~E~~l~~---------------------l~~~~~------~~~~~~~~~~~~l~~li-~~ 297 (406)
++.++ +...++++||..|.++.+ +++++. .+||..+|. +++++++ ++
T Consensus 238 ~i~~~----~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~-~~~~~~i~~~ 312 (396)
T PRK09602 238 RLKEE----KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGG-TGVQEAINTA 312 (396)
T ss_pred HHHhc----CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCC-chHHHHHHHH
Confidence 55443 345799999999998776 443331 267778886 8999999 99
Q ss_pred HHcccCcEEEeecCC----------CCeeeEEecCCCCcchhcccchhhhhhccEEEEEeccchhhhcCChHHHhhcCce
Q 015465 298 GFSAINLIYFFTAGP----------DEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKVNVLI 367 (406)
Q Consensus 298 ~~~~L~li~~fT~g~----------~e~raw~i~~gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~~k~~g~~ 367 (406)
+|++|+||+|||+++ +++|||++++|+||+|+|++|||||+++||||+. +| +.
T Consensus 313 ~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~--------------~~---~~ 375 (396)
T PRK09602 313 VFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFLYAID--------------AR---TK 375 (396)
T ss_pred HHHHhCCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhceehhc--------------cc---CC
Confidence 999999999999976 6777999999999999999999999999999993 22 35
Q ss_pred eeeeeeeeeeccCCCccccCCCcEEEE
Q 015465 368 SRFIIIISILSCPSCHCKSTEFACHWL 394 (406)
Q Consensus 368 r~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
|.-|+. |..++||+..|
T Consensus 376 ~~~g~~----------~~l~dgDiv~i 392 (396)
T PRK09602 376 RRIGED----------YELKDGDVIKI 392 (396)
T ss_pred cccCCC----------cEecCCCEEEE
Confidence 666777 99999998876
No 7
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=1.4e-47 Score=366.58 Aligned_cols=273 Identities=51% Similarity=0.830 Sum_probs=247.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCCC
Q 015465 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQ 106 (406)
Q Consensus 27 igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~~ 106 (406)
+||||.||||||||||+|||....+++|||||++|+.|.+.+++.+++.++.++.|++.++++++++|+||+..+.+.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 58999999999999999999999889999999999999999999999999999999999999999999999999998888
Q ss_pred CCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHH
Q 015465 107 GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHE 186 (406)
Q Consensus 107 ~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~ 186 (406)
+++++|+.+++.+|+++||+|+|+++++.+..+.+||.+|+++++.|+.++|++.++++++++.+...... ........
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~~-~~~~~e~~ 159 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGD-KEAKAELE 159 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-HHHHHHHH
Confidence 89999999999999999999999999999998899999999999999999999999999999887654322 34566778
Q ss_pred HHHHHHHHhhCCCccccCCCChhHHHHHHHhhhhccccEEeeeccchhhhhhhhccChhhHHHHHHhhCCCeEEEecccc
Q 015465 187 LCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCAL 266 (406)
Q Consensus 187 l~~~i~~~L~~g~~~~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~~~~~v~~i~~~~~~~~~~~~v~~sa~~ 266 (406)
+++++..+|++|++++...|++++++.++.+.+++.||++|++|+++.++. ..+.+..++..+.... +.+++++||..
T Consensus 160 ~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~-~~~~~~~~~~~~~~~~-~~~~i~~sa~~ 237 (274)
T cd01900 160 LLEKIKEHLEEGKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLA-NGNNKVLKVREIAAKE-GAEVIPISAKI 237 (274)
T ss_pred HHHHHHHHHHcCCCcCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhc-cccHHHHHHHHHHhcC-CCeEEEeeHHH
Confidence 999999999999999888999999999999999999999999999997663 2334555666655443 67899999999
Q ss_pred chhhcCCChhHHHHHHHhcc-ccccHHHHHHHHHccc
Q 015465 267 ERNLADMPPDEAAKYCEENK-VQSALPKIIKTGFSAI 302 (406)
Q Consensus 267 E~~l~~l~~~~~~~~~~~~~-~~~~l~~li~~~~~~L 302 (406)
|.+|++|+++|+.+|++++| .++++++||+++|++|
T Consensus 238 E~eL~~l~~ee~~~fl~~~gi~es~l~riI~~~y~~L 274 (274)
T cd01900 238 EAELAELDEEEAAEFLEELGLEESGLDRLIRAGYELL 274 (274)
T ss_pred HHHHHcCCHHHHHHHHHHcCCccccHHHHHHHHHhhC
Confidence 99999999999999999999 7899999999999986
No 8
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=3.1e-36 Score=285.38 Aligned_cols=269 Identities=27% Similarity=0.344 Sum_probs=204.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
..+++||+|++|||||||.|||...+++.|||||..|..|++.+.|. +++++|+||+..+++.
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga-----------------~IQild~Pgii~gas~ 126 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGA-----------------QIQLLDLPGIIEGASS 126 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCc-----------------eEEEEcCcccccCccc
Confidence 68999999999999999999999999999999999999999999984 5999999999999999
Q ss_pred CCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHH-HHhhhccc--cch
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVE-KSMKRSND--KQL 181 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~-~~~~~~~~--h~~ 181 (406)
+.+.|.+++..+|.||+++.|+|++.+ ...++.+.+|+....+..-++ ...+. +....++. +..
T Consensus 127 g~grG~~vlsv~R~ADlIiiVld~~~~------------~~~~~~i~~ELe~~GIrlnk~-~p~V~I~kk~~gGI~i~~t 193 (365)
T COG1163 127 GRGRGRQVLSVARNADLIIIVLDVFED------------PHHRDIIERELEDVGIRLNKR-PPDVTIKKKESGGIRINGT 193 (365)
T ss_pred CCCCcceeeeeeccCCEEEEEEecCCC------------hhHHHHHHHHHHhcCeEecCC-CCceEEEEeccCCEEEecc
Confidence 999999999999999999999998642 223777777776665532211 11111 00011110 111
Q ss_pred HHH-HHHHHHHHHHhhCCCcc-----ccCCCChhHHHHHHHhhhhccccEEeeeccchhhhhhhhccChhhHHHHHHhhC
Q 015465 182 KIE-HELCQRVKAWLQDGKDV-----RLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHG 255 (406)
Q Consensus 182 ~~v-~~l~~~i~~~L~~g~~~-----~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~~~~~v~~i~~~~~~~~ 255 (406)
..+ .--.+.|+.+|.+.++. ..+++|.|++... -+..+.++|.+|++|+.|..- .+++..+.+.
T Consensus 194 ~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~-l~~nrvY~p~l~v~NKiD~~~-------~e~~~~l~~~-- 263 (365)
T COG1163 194 GPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDA-LEGNRVYKPALYVVNKIDLPG-------LEELERLARK-- 263 (365)
T ss_pred cccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHH-HhhcceeeeeEEEEecccccC-------HHHHHHHHhc--
Confidence 111 12235566777776653 3478888876542 235578999999999987532 2234433322
Q ss_pred CCeEEEeccccchhhcCCChhHHHHHHHhccccccHHHHHHHHHcccCcEEEeecCCCCe----eeEEecCCCCcchhcc
Q 015465 256 GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEV----KCWQIRRQTKAPQAAG 331 (406)
Q Consensus 256 ~~~~v~~sa~~E~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~L~li~~fT~g~~e~----raw~i~~gsta~~aAg 331 (406)
...+++||.... ++++|.+.+|+.|++|++||+.|.+. .|.++++|||+.|+|.
T Consensus 264 -~~~v~isa~~~~---------------------nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~ 321 (365)
T COG1163 264 -PNSVPISAKKGI---------------------NLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCR 321 (365)
T ss_pred -cceEEEecccCC---------------------CHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCCcHHHHHH
Confidence 258899987643 48899999999999999999988654 6999999999999999
Q ss_pred cchhhhhhccEEEEEeccchhhhcCChHHHhhcC
Q 015465 332 TIHTDFERGFICAEVMKFDDLKELGSEPAVKVNV 365 (406)
Q Consensus 332 ~IHsD~~kgFi~Aev~~~~d~~~~g~~~~~k~~g 365 (406)
+||+||.+.|.||.||+.+ +|..|
T Consensus 322 ~IH~~l~~~FryA~VWGkS----------vk~~~ 345 (365)
T COG1163 322 KIHRDLVENFRYARVWGKS----------VKHPG 345 (365)
T ss_pred HHHHHHHHhcceEEEeccC----------CCCCc
Confidence 9999999999999999998 67776
No 9
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=100.00 E-value=1.2e-36 Score=234.69 Aligned_cols=84 Identities=48% Similarity=0.669 Sum_probs=76.4
Q ss_pred cEEEeecCCCCeeeEEecCCCCcchhcccchhhhhhccEEEEEeccchhhhcCChHHHhhcCceeeeeeeeeeeccCCCc
Q 015465 304 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKVNVLISRFIIIISILSCPSCH 383 (406)
Q Consensus 304 li~~fT~g~~e~raw~i~~gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~~~~~~~~~~~~~~ 383 (406)
|++|||+||+|+||||+++|+|||||||+|||||+||||+|||++|+||+++||++++|++||+|+.|++
T Consensus 1 L~tffT~G~~EvRaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~---------- 70 (84)
T PF06071_consen 1 LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKD---------- 70 (84)
T ss_dssp EEEEEEESSSEEEEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT----------
T ss_pred CceEEccCCCeEEEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCc----------
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEEEE
Q 015465 384 CKSTEFACHWLRIV 397 (406)
Q Consensus 384 ~~~~~~~~~~~~~~ 397 (406)
|..|+||+++||||
T Consensus 71 YivqDGDIi~f~fN 84 (84)
T PF06071_consen 71 YIVQDGDIIHFRFN 84 (84)
T ss_dssp -B--TTEEEEEEE-
T ss_pred eeEeCCCEEEEEcC
Confidence 99999999999998
No 10
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=100.00 E-value=3.2e-36 Score=230.73 Aligned_cols=83 Identities=54% Similarity=0.766 Sum_probs=81.8
Q ss_pred cEEEeecCCCCeeeEEecCCCCcchhcccchhhhhhccEEEEEeccchhhhcCChHHHhhcCceeeeeeeeeeeccCCCc
Q 015465 304 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKVNVLISRFIIIISILSCPSCH 383 (406)
Q Consensus 304 li~~fT~g~~e~raw~i~~gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~~~~~~~~~~~~~~ 383 (406)
|++|||+||+|+||||+++|+|||||||+|||||+||||+|||++|+||+++||+++||++||+|+.|+.
T Consensus 1 L~tffT~G~~EvRAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~---------- 70 (83)
T cd04867 1 LISFFTAGPDEVRAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKD---------- 70 (83)
T ss_pred CccEECCCCCeEEEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCc----------
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEEE
Q 015465 384 CKSTEFACHWLRI 396 (406)
Q Consensus 384 ~~~~~~~~~~~~~ 396 (406)
|..++||+++|||
T Consensus 71 Yiv~DGDi~~f~f 83 (83)
T cd04867 71 YVVQDGDIIFFKF 83 (83)
T ss_pred eEeeCCeEEEEEC
Confidence 9999999999996
No 11
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.97 E-value=9.3e-30 Score=249.12 Aligned_cols=248 Identities=29% Similarity=0.436 Sum_probs=190.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEc----CCcchhhhhhh-----ccCCCCcCceeEEEeecc
Q 015465 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI----PDERFEWLCQL-----FKPKSAVPAFLEIHDIAG 97 (406)
Q Consensus 27 igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v----~g~~~~~l~~~-----~~p~~~~~~~i~lvD~~g 97 (406)
+||||.||+|||||||+||+....+++|||||++|+.|.+.+ ++.+++.++.. ..+.+.+ .++++|+||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v--~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYV--PVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcc--eEEEEECCC
Confidence 589999999999999999999888899999999999999886 55566665532 1122223 499999999
Q ss_pred ccccccCCCCCcchhhhhHHhhhchhhhhcccCCCc---eEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 015465 98 LVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD---IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK 174 (406)
Q Consensus 98 l~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~---il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~ 174 (406)
+..+++++.+++++|++.++.+|+++||+|++.+.+ +.+..+..||..+++++..|+.+||+..++++++++.+...
T Consensus 79 lv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~ 158 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKAD 158 (318)
T ss_pred CCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888888899999999999999999999996544 36777889999999999999999999999999998886553
Q ss_pred hccc---cchHHHHHHH----HHHHHHhhCCC-ccccCCCChhHHHHHHHhhhhccccEEeeeccchhhhhhhhccChhh
Q 015465 175 RSND---KQLKIEHELC----QRVKAWLQDGK-DVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPK 246 (406)
Q Consensus 175 ~~~~---h~~~~v~~l~----~~i~~~L~~g~-~~~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~~~~~v~~ 246 (406)
.+.. ........++ ++|..+|++|. ......|++.+++.+..+++++.||++|++|+.|.. . .+...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~--~-~~~~~~~ 235 (318)
T cd01899 159 AEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIP--D-AENNISK 235 (318)
T ss_pred cCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHcc--C-hHHHHHH
Confidence 3211 1122233444 77888887766 444467899999988888889999999999999842 1 1212233
Q ss_pred HHHHHHhhCCCeEEEeccccchhhcCCChhHHHHHH
Q 015465 247 IHAWVQEHGGEQIIPFSCALERNLADMPPDEAAKYC 282 (406)
Q Consensus 247 i~~~~~~~~~~~~v~~sa~~E~~l~~l~~~~~~~~~ 282 (406)
+.. ......++++||..|.++.+|.+++..+|+
T Consensus 236 l~~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 236 LRL---KYPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred HHh---hCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 332 222467999999999988888444555554
No 12
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.94 E-value=2.2e-26 Score=210.95 Aligned_cols=263 Identities=19% Similarity=0.292 Sum_probs=187.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
...+++||.|.+|||||+..||+...+.++|.|||+....|.+.++|. .++++|+||+..+++
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga-----------------~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA-----------------NIQLLDLPGIIEGAS 124 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc-----------------eEEEecCcccccccc
Confidence 469999999999999999999999888999999999999999999985 499999999999999
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccc---cc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND---KQ 180 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~---h~ 180 (406)
.+.+.|.+.....+.+|+++.|+|+... ...-..++.|+..-.+..-.+.-+..-+....++. +.
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~------------e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T 192 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKS------------EDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTT 192 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcc------------hhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeee
Confidence 9999999999999999999999888532 11233444444444332111111100000001110 00
Q ss_pred h---HHHHHHHHHHHHHhhCCC-----ccccCCCChhHHHHHHHhhhhccccEEeeeccchhhhhhhhccChhhHHHHHH
Q 015465 181 L---KIEHELCQRVKAWLQDGK-----DVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQ 252 (406)
Q Consensus 181 ~---~~v~~l~~~i~~~L~~g~-----~~~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~~~~~v~~i~~~~~ 252 (406)
. .--+.++. .+|.+.+ +++..+.|.++.-.+- .+.+.+-+++|+-|+.|.- .++++..+..
T Consensus 193 ~~lT~~~ek~i~---~ILheykI~Naevl~ReD~t~DdfIDvi-~gnr~Y~~ClYvYnKID~v-------s~eevdrlAr 261 (364)
T KOG1486|consen 193 VPLTHCDEKLIY---TILHEYKIHNAEVLFREDCTVDDFIDVI-EGNRVYIKCLYVYNKIDQV-------SIEEVDRLAR 261 (364)
T ss_pred eccccccHHHHH---HHHHHHeeccceEEEecCCChHHHHHHH-hccceEEEEEEEeecccee-------cHHHHHHHhc
Confidence 0 01122333 4454444 3444567777643221 3567889999999998753 2345544433
Q ss_pred hhCCCeEEEeccccchhhcCCChhHHHHHHHhccccccHHHHHHHHHcccCcEEEeecCCC----CeeeEEecCCCCcch
Q 015465 253 EHGGEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPD----EVKCWQIRRQTKAPQ 328 (406)
Q Consensus 253 ~~~~~~~v~~sa~~E~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~L~li~~fT~g~~----e~raw~i~~gsta~~ 328 (406)
. ++ .+++|+... | +|++|.+..++.|+|.++||+.+. ...|.++++|+|+.|
T Consensus 262 ~--Pn-svViSC~m~-----l----------------nld~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~g~tve~ 317 (364)
T KOG1486|consen 262 Q--PN-SVVISCNMK-----L----------------NLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKGSTVED 317 (364)
T ss_pred C--CC-cEEEEeccc-----c----------------CHHHHHHHHHHHhceEEEEecCCCCCCCCCCceEEeCCCcHHH
Confidence 2 33 455565442 2 589999999999999999999764 446999999999999
Q ss_pred hcccchhhhhhccEEEEEeccc
Q 015465 329 AAGTIHTDFERGFICAEVMKFD 350 (406)
Q Consensus 329 aAg~IHsD~~kgFi~Aev~~~~ 350 (406)
+|..||.||+..|+||-||+.+
T Consensus 318 ~C~~iHr~l~~qfkyAlVWGtS 339 (364)
T KOG1486|consen 318 VCHRIHRTLAAQFKYALVWGTS 339 (364)
T ss_pred HHHHHHHHHHHhhceeeEeccc
Confidence 9999999999999999999987
No 13
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.83 E-value=2.6e-21 Score=178.40 Aligned_cols=262 Identities=20% Similarity=0.291 Sum_probs=188.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
++|++|.|.+||||++.-|+|...+++.|-|||.....|.+.+.|. .+++.|+||+..++..+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~ga-----------------Kiqlldlpgiiegakdg 123 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGA-----------------KIQLLDLPGIIEGAKDG 123 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecccc-----------------ceeeecCcchhcccccC
Confidence 8999999999999999999999999999999999999999999875 48999999999999999
Q ss_pred CCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHH-HHhhhccccchHHH
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVE-KSMKRSNDKQLKIE 184 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~-~~~~~~~~h~~~~v 184 (406)
.+.+.+.....|.+.+++.|+|+ ..|...-.+++.|+.-..+..-.+. ..+. +...+++ -++...
T Consensus 124 kgrg~qviavartcnli~~vld~------------~kp~~hk~~ie~eleg~girlnk~p-p~i~~kkKdkgG-Inlt~~ 189 (358)
T KOG1487|consen 124 KGRGKQVIAVARTCNLIFIVLDV------------LKPLSHKKIIEKELEGFGIRLNKQP-PNIGTKKKDKGG-INLTGT 189 (358)
T ss_pred CCCccEEEEEeecccEEEEEeec------------cCcccHHHHHHHhhhcceeeccCCC-CCccccccccCc-eeeecc
Confidence 99999998888999888887776 3688888888887765555422211 1111 1111221 111111
Q ss_pred HHHHHHHHHHhhCCCc-----cccCCCChhHHHHHHHhhhhccccEEeeeccchhhhhhhhccChhhHHHHHHhhCCCeE
Q 015465 185 HELCQRVKAWLQDGKD-----VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQI 259 (406)
Q Consensus 185 ~~l~~~i~~~L~~g~~-----~~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~~~~~v~~i~~~~~~~~~~~~ 259 (406)
.-.+|.++.++.+.+. ....+-|.++.-.+-+ +.+.+-|.+|++|+.+.- +++++.-.. .-...
T Consensus 190 ~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvVe-gnr~yVp~iyvLNkIdsI-------SiEELdii~---~ipha 258 (358)
T KOG1487|consen 190 HLDLDLQRSILSEYRIHSADIALRFDATADDLIDVVE-GNRIYVPCIYVLNKIDSI-------SIEELDIIY---TIPHA 258 (358)
T ss_pred hhhHHHHHHHHHHhhhcchheeeecCcchhhhhhhhc-cCceeeeeeeeeccccee-------eeeccceee---eccce
Confidence 1223333344443332 2223444444322112 445788999999998743 222332211 13458
Q ss_pred EEeccccchhhcCCChhHHHHHHHhccccccHHHHHHHHHcccCcEEEeecCCCC----eeeEEecCC-CCcchhcccch
Q 015465 260 IPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDE----VKCWQIRRQ-TKAPQAAGTIH 334 (406)
Q Consensus 260 v~~sa~~E~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~L~li~~fT~g~~e----~raw~i~~g-sta~~aAg~IH 334 (406)
+++||..+++ ++.+....++.|+|+++||+.+.. ..+-+++.+ +|+.|+|.+||
T Consensus 259 vpISA~~~wn---------------------~d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~sv~dfc~~ih 317 (358)
T KOG1487|consen 259 VPISAHTGWN---------------------FDKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRSVEDFCNKIH 317 (358)
T ss_pred eecccccccc---------------------hHHHHHHHhhcchheEEecCCCCCCCCCCCCceecCCcccHHHHHHHHH
Confidence 9999988765 788899999999999999987643 356777766 89999999999
Q ss_pred hhhhhccEEEEEeccc
Q 015465 335 TDFERGFICAEVMKFD 350 (406)
Q Consensus 335 sD~~kgFi~Aev~~~~ 350 (406)
+++.+.|+||-||+..
T Consensus 318 ~~~~~~fk~alvwg~s 333 (358)
T KOG1487|consen 318 KSILKQFKYALVWGSS 333 (358)
T ss_pred HHHHHhhhhheEeccc
Confidence 9999999999999988
No 14
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.80 E-value=5.9e-20 Score=173.13 Aligned_cols=223 Identities=21% Similarity=0.295 Sum_probs=144.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
+++|+|+||+|||||+|+|+|....++++||+|..|..|.+.+.|. .++++|+||+.......
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~-----------------~i~l~DtpG~~~~~~~~ 64 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA-----------------KIQLLDLPGIIEGAADG 64 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe-----------------EEEEEECCCcccccccc
Confidence 6899999999999999999999877899999999999999988764 38999999987765544
Q ss_pred CCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhh-hcccc---ch
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK-RSNDK---QL 181 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~-~~~~h---~~ 181 (406)
.++..+++..++.+|++++|+|++. +...++.+.+++...++. +.+....+.-... .++.. ..
T Consensus 65 ~~~~~~~l~~~~~ad~il~V~D~t~------------~~~~~~~~~~~l~~~gi~-l~~~~~~v~~~~~~~ggi~~~~~~ 131 (233)
T cd01896 65 KGRGRQVIAVARTADLILMVLDATK------------PEGHREILERELEGVGIR-LNKRPPNITIKKKKKGGINITSTV 131 (233)
T ss_pred hhHHHHHHHhhccCCEEEEEecCCc------------chhHHHHHHHHHHHcCce-ecCCCCeEEEEEEecCCEEEeccC
Confidence 4555666778889999999988852 333455555544444331 1111110000000 00000 00
Q ss_pred HHHHHHHHHHHHHhhCCCcc-----ccCCCChhHHHHHHHhhhhccccEEeeeccchhhhhhhhccChhhHHHHHHhhCC
Q 015465 182 KIEHELCQRVKAWLQDGKDV-----RLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGG 256 (406)
Q Consensus 182 ~~v~~l~~~i~~~L~~g~~~-----~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~~~~~v~~i~~~~~~~~~ 256 (406)
.....-.+.+..+|++.++. ..++.|.++++.. -+..+.+.|+++++||.|..-. +++..+.. .
T Consensus 132 ~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~-~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~~~---~ 200 (233)
T cd01896 132 PLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDV-IEGNRVYIPCLYVYNKIDLISI-------EELDLLAR---Q 200 (233)
T ss_pred CCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHH-HhCCceEeeEEEEEECccCCCH-------HHHHHHhc---C
Confidence 11111224444555554432 2367777776532 1356788999999999985211 12233221 2
Q ss_pred CeEEEeccccchhhcCCChhHHHHHHHhccccccHHHHHHHHHcccCcEEEeec
Q 015465 257 EQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTA 310 (406)
Q Consensus 257 ~~~v~~sa~~E~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~L~li~~fT~ 310 (406)
..++.+||... .++++|.+.+++.|++|++||+
T Consensus 201 ~~~~~~SA~~g---------------------~gi~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 201 PNSVVISAEKG---------------------LNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred CCEEEEcCCCC---------------------CCHHHHHHHHHHHhCcEEEecC
Confidence 35788887763 3588899999999999999996
No 15
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.79 E-value=3.6e-19 Score=168.89 Aligned_cols=90 Identities=37% Similarity=0.682 Sum_probs=84.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
..+|+||.||||||||+|+|+..+..++.|+|||+.|..|.+.+++- .++++.|+||++.+++.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf----------------~q~tVADiPGiI~GAh~ 260 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF----------------SQITVADIPGIIEGAHM 260 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc----------------ceeEeccCccccccccc
Confidence 46899999999999999999999999999999999999999988863 35999999999999999
Q ss_pred CCCCcchhhhhHHhhhchhhhhcccC
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
+++++-+|+++++.++.+++|+|++.
T Consensus 261 nkGlG~~FLrHiER~~~l~fVvD~s~ 286 (366)
T KOG1489|consen 261 NKGLGYKFLRHIERCKGLLFVVDLSG 286 (366)
T ss_pred cCcccHHHHHHHHhhceEEEEEECCC
Confidence 99999999999999999999999964
No 16
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=1.3e-19 Score=166.71 Aligned_cols=167 Identities=20% Similarity=0.336 Sum_probs=118.9
Q ss_pred CcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh---hhccCCC-CcCc
Q 015465 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---QLFKPKS-AVPA 88 (406)
Q Consensus 13 ~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~---~~~~p~~-~~~~ 88 (406)
+-.+..-.+++|+++|++|+|||||||+|++|+|. ++|++|.|.++|.++.+.. .+|.|.. ..+.
T Consensus 17 av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl-----------le~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~ 85 (300)
T COG4152 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL-----------LEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYP 85 (300)
T ss_pred eecceeeeecCCeEEEeecCCCCCccchHHHHhcc-----------CCccCceEEEcCcchhhhhhhhcccChhhhccCc
Confidence 34556677899999999999999999999999999 8999999999998876543 3688854 5677
Q ss_pred eeEEEeecccccccc---C-------------------------CCCCcchhhhhHHhhhchhhhhcccCCCceEeecCC
Q 015465 89 FLEIHDIAGLVRGAH---E-------------------------GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDS 140 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~---~-------------------------~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~ 140 (406)
.+++.|..-+..... + ..+.|++ +.++-..+++ +.|++++||
T Consensus 86 k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnq--QKIQfisavi------HePeLlILD-- 155 (300)
T COG4152 86 KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQ--QKIQFISAVI------HEPELLILD-- 155 (300)
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhh--HHHHHHHHHh------cCCCEEEec--
Confidence 777777544321111 0 0011111 2222223333 599999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
+|++++|++|.++....+-. +...+..+..|+ |.|+.+++|||++ -+|..|+.+..|++.
T Consensus 156 -EPFSGLDPVN~elLk~~I~~----lk~~GatIifSs-H~Me~vEeLCD~l-lmL~kG~~V~~G~v~ 215 (300)
T COG4152 156 -EPFSGLDPVNVELLKDAIFE----LKEEGATIIFSS-HRMEHVEELCDRL-LMLKKGQTVLYGTVE 215 (300)
T ss_pred -CCccCCChhhHHHHHHHHHH----HHhcCCEEEEec-chHHHHHHHhhhh-heecCCceEEeccHH
Confidence 99999999998776543322 222223333343 9999999999999 899999999888753
No 17
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.7e-18 Score=166.17 Aligned_cols=90 Identities=38% Similarity=0.657 Sum_probs=83.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.-||+||.||||||||+++++..+..+++|||||+.|+-|.|.+.+. ..+.+.|+||++.+++.
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~----------------~sfv~ADIPGLIEGAs~ 223 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG----------------ESFVVADIPGLIEGASE 223 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC----------------CcEEEecCccccccccc
Confidence 36899999999999999999999999999999999999999998543 24889999999999999
Q ss_pred CCCCcchhhhhHHhhhchhhhhcccC
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
+.+++.+||+++..+.+++||+|++.
T Consensus 224 G~GLG~~FLrHIERt~vL~hviD~s~ 249 (369)
T COG0536 224 GVGLGLRFLRHIERTRVLLHVIDLSP 249 (369)
T ss_pred CCCccHHHHHHHHhhheeEEEEecCc
Confidence 99999999999999999999999963
No 18
>COG1159 Era GTPase [General function prediction only]
Probab=99.73 E-value=2.6e-18 Score=162.93 Aligned_cols=194 Identities=23% Similarity=0.268 Sum_probs=133.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..++|||+||+|||||+|.|.|.++++ |+.|.||+....|.+..++ .++.|+||||+....+
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~-----------------~QiIfvDTPGih~pk~ 69 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN-----------------AQIIFVDTPGIHKPKH 69 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC-----------------ceEEEEeCCCCCCcch
Confidence 478999999999999999999999977 9999999999999988764 4699999999998755
Q ss_pred C-CCCCcchhhhhHHhhhchhhhhcccCCCce---Eeec---CCCCCC----chHHHHHHHHh-hhhHHHHHHHHHHHHH
Q 015465 104 E-GQGLGNSFLSHIRAVDGIFHVLRAFEDPDI---IHVD---DSVDPV----RDLEVISAELR-LKDIEFMERRIEDVEK 171 (406)
Q Consensus 104 ~-~~~l~~~~l~~l~~ad~ll~vvda~~~~~i---l~ld---~~~dP~----~~ld~i~~el~-~~di~~l~k~l~~~~~ 171 (406)
. +..+.......+..+|++++|+|+.+...- .+++ ...-|. +.+|.+..+.. +.-++.+..... +..
T Consensus 70 ~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~-f~~ 148 (298)
T COG1159 70 ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLP-FKE 148 (298)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCC-cce
Confidence 4 333445567788999999999999642110 0000 000111 12332222211 111111111111 112
Q ss_pred HhhhccccchHHHHHHHHHHHHHhhCCCcccc-CCCChhHH-----HHHHHh-hhhccccEEeeeccchhhhh
Q 015465 172 SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAADI-----EILNTF-QLLTAKPVVYLVNMNEKDYQ 237 (406)
Q Consensus 172 ~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~-~~~t~~e~-----e~i~~~-~~~~~kpi~~~~N~~~~~~~ 237 (406)
.+..|. ....++..|.+.+...|++|..+++ +.+||.+. |++|+. ...+..++||.+.+..+.+.
T Consensus 149 ivpiSA-~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~ 220 (298)
T COG1159 149 IVPISA-LKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFE 220 (298)
T ss_pred EEEeec-cccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEE
Confidence 222232 6677889999999999999999887 56777663 788988 77889999999988766554
No 19
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.72 E-value=1.4e-17 Score=157.21 Aligned_cols=172 Identities=22% Similarity=0.258 Sum_probs=122.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCC-CcC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKS-AVP 87 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~-~~~ 87 (406)
+..-.+++|++++|+||||||||||+++|+|. ..|.+|.|.++|.++..+.. .|.||. ..+
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~-----------l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~ 88 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAGL-----------LKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAP 88 (258)
T ss_pred cceEEecCCcEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCC
Confidence 34456889999999999999999999999999 88999999999998876542 589998 678
Q ss_pred ceeEEEeeccccccccCCCCC--cch----h---hhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCC
Q 015465 88 AFLEIHDIAGLVRGAHEGQGL--GNS----F---LSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~~~~l--~~~----~---l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP 143 (406)
..+++.|.+.+++.++.+... ..+ . ++.+...+. .+.+++|. ++|+++++| ||
T Consensus 89 ~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLD---EP 165 (258)
T COG1120 89 FGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLD---EP 165 (258)
T ss_pred CCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeC---CC
Confidence 889999999998877653211 111 1 111111111 15677777 899999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
++.+|+-++-..+.-+..+.+. -...+ .-..|+++...+.||++ ..|++|+++..|..
T Consensus 166 Ts~LDi~~Q~evl~ll~~l~~~---~~~tv-v~vlHDlN~A~ryad~~-i~lk~G~i~a~G~p 223 (258)
T COG1120 166 TSHLDIAHQIEVLELLRDLNRE---KGLTV-VMVLHDLNLAARYADHL-ILLKDGKIVAQGTP 223 (258)
T ss_pred ccccCHHHHHHHHHHHHHHHHh---cCCEE-EEEecCHHHHHHhCCEE-EEEECCeEEeecCc
Confidence 9999999864333322111110 00000 01129999999999999 89999999988753
No 20
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=9.5e-17 Score=164.92 Aligned_cols=90 Identities=36% Similarity=0.645 Sum_probs=81.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
-..|+|||.||||||||||+|++....+++|||||+.|+.|.+.+.+. .++++|+||+..+.+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~-----------------~f~laDtPGliegas 221 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT-----------------RFTVADVPGLIPGAS 221 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe-----------------EEEEEECCCCccccc
Confidence 358999999999999999999999888899999999999999988764 389999999998888
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcccC
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
.+.+++..++++++.+|+++||+|++.
T Consensus 222 ~g~gLg~~fLrhieradvLv~VVD~s~ 248 (500)
T PRK12296 222 EGKGLGLDFLRHIERCAVLVHVVDCAT 248 (500)
T ss_pred hhhHHHHHHHHHHHhcCEEEEEECCcc
Confidence 777788889999999999999999863
No 21
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=1.7e-17 Score=154.94 Aligned_cols=183 Identities=20% Similarity=0.287 Sum_probs=116.0
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-----hhh--hccCCC---
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKS--- 84 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-----l~~--~~~p~~--- 84 (406)
....-.+++|+++|++|+|||||||++++|||. +.|++|.|.++|..-.. +.. ..+.|+
T Consensus 41 qdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl-----------l~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql 109 (325)
T COG4586 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL-----------LLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQL 109 (325)
T ss_pred heeeeecCCCcEEEEEcCCCCcchhhHHHHhCc-----------cccCCCeEEecCcCcchhHHHHHHHHHHHhhhhhee
Confidence 345566899999999999999999999999999 88999999999864211 111 111111
Q ss_pred --------------------------CcCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeec
Q 015465 85 --------------------------AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVD 138 (406)
Q Consensus 85 --------------------------~~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld 138 (406)
+.....++.|+-++.+.+....++|.++ +...+-+++| +|++++||
T Consensus 110 ~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRm--raeLaaaLLh------~p~VLfLD 181 (325)
T COG4586 110 WWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRM--RAELAAALLH------PPKVLFLD 181 (325)
T ss_pred eeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHH--HHHHHHHhcC------CCcEEEec
Confidence 1111122333333333333333444442 2333445555 99999999
Q ss_pred CCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCCChhHHHHHHHhh
Q 015465 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQ 218 (406)
Q Consensus 139 ~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t~~e~e~i~~~~ 218 (406)
||+-++|++.++-++.-+.... ++-+..+-.. +|++..+..+|++| -+++.|+++++|+++ .....|+
T Consensus 182 ---EpTvgLDV~aq~~ir~Flke~n---~~~~aTVllT-TH~~~di~~lc~rv-~~I~~Gqlv~dg~l~----~l~~~f~ 249 (325)
T COG4586 182 ---EPTVGLDVNAQANIREFLKEYN---EERQATVLLT-THIFDDIATLCDRV-LLIDQGQLVFDGTLA----QLQEQFG 249 (325)
T ss_pred ---CCccCcchhHHHHHHHHHHHHH---HhhCceEEEE-ecchhhHHHhhhhe-EEeeCCcEeecccHH----HHHHHhC
Confidence 9999999998754443322211 1111111112 39999999999999 889999999998876 3333343
Q ss_pred hhccccEEeeec
Q 015465 219 LLTAKPVVYLVN 230 (406)
Q Consensus 219 ~~~~kpi~~~~N 230 (406)
-.+..-+.++
T Consensus 250 --~~k~~~~el~ 259 (325)
T COG4586 250 --PYKEFSVELK 259 (325)
T ss_pred --CceEEEEEEc
Confidence 4555555555
No 22
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=5.6e-16 Score=156.16 Aligned_cols=162 Identities=28% Similarity=0.454 Sum_probs=111.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
..|||||+||||||||||+|++..+.++++||||+.|+.|.+.+.+. ..+.++|+||+..+++.
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~----------------~~i~~vDtPGi~~~a~~ 223 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE----------------RSFVVADIPGLIEGASE 223 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC----------------cEEEEEeCCCccccccc
Confidence 36999999999999999999999888899999999999999988642 13899999999988877
Q ss_pred CCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhh-------------------hHHHHHHH
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLK-------------------DIEFMERR 165 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~-------------------di~~l~k~ 165 (406)
+.+++.+++++++.+|++++|+|+..-. ..+|..++..+.+++... ....+...
T Consensus 224 ~~~Lg~~~l~~i~radvlL~VVD~s~~~-------~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~ 296 (390)
T PRK12298 224 GAGLGIRFLKHLERCRVLLHLIDIAPID-------GSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEER 296 (390)
T ss_pred hhhHHHHHHHHHHhCCEEEEEeccCccc-------ccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHH
Confidence 7778889999999999999999976110 012332222222222211 00111111
Q ss_pred HHHHHHH-------hhhccccchHHHHHHHHHHHHHhhCCCcccc-CCCChhH
Q 015465 166 IEDVEKS-------MKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD 210 (406)
Q Consensus 166 l~~~~~~-------~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~-~~~t~~e 210 (406)
+..+.+. +..+ ++....+.++++.+...|+.++.+++ ..+|+.+
T Consensus 297 l~~l~~~~~~~~~Vi~IS-A~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~ 348 (390)
T PRK12298 297 AKAIVEALGWEGPVYLIS-AASGLGVKELCWDLMTFIEENPREEAEEAEAPEK 348 (390)
T ss_pred HHHHHHHhCCCCCEEEEE-CCCCcCHHHHHHHHHHHhhhCcccCCcccccCcc
Confidence 2222111 1112 37788889999999888888877655 4455443
No 23
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.65 E-value=5.3e-17 Score=157.98 Aligned_cols=165 Identities=19% Similarity=0.251 Sum_probs=110.2
Q ss_pred CcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh----h--hhhccCCC-C
Q 015465 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----L--CQLFKPKS-A 85 (406)
Q Consensus 13 ~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~----l--~~~~~p~~-~ 85 (406)
.-.+....+++|+++||+||||||||||+++|+|. +.|++|.|.+.|.+... . ...|.|+. .
T Consensus 20 ~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~ 88 (293)
T COG1131 20 ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL-----------LKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPS 88 (293)
T ss_pred EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEEcCEeCccCHHHHHhheEEEccCCC
Confidence 34456667899999999999999999999999999 88999999999976532 1 12577766 3
Q ss_pred cCceeEEEeeccccccccC----------------------------CCCCcchhhhhHHhhhchhhhhcccCCCceEee
Q 015465 86 VPAFLEIHDIAGLVRGAHE----------------------------GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHV 137 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~----------------------------~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~l 137 (406)
.+..+++.|+..+...... ..+.|++ +++..+-+++ .+|+++++
T Consensus 89 ~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~k--qrl~ia~aL~------~~P~lliL 160 (293)
T COG1131 89 LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMK--QRLSIALALL------HDPELLIL 160 (293)
T ss_pred CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHH--HHHHHHHHHh------cCCCEEEE
Confidence 4555666555444321111 0111111 3333333333 59999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHH-HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVE-KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 138 d~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~-~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
| ||++++|+.........+.. +.+-. ..+..+ +|.+++++.+||+| .+|++|++++.++
T Consensus 161 D---EPt~GLDp~~~~~~~~~l~~----l~~~g~~tvlis-sH~l~e~~~~~d~v-~il~~G~~~~~g~ 220 (293)
T COG1131 161 D---EPTSGLDPESRREIWELLRE----LAKEGGVTILLS-THILEEAEELCDRV-IILNDGKIIAEGT 220 (293)
T ss_pred C---CCCcCCCHHHHHHHHHHHHH----HHhCCCcEEEEe-CCcHHHHHHhCCEE-EEEeCCEEEEeCC
Confidence 9 99999999985333222111 11111 111122 39999999999999 9999999998874
No 24
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=1.1e-15 Score=151.21 Aligned_cols=89 Identities=39% Similarity=0.688 Sum_probs=80.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
..|||||.||||||||||+|++..+.+++|||||+.|+.|.+.+.+. ..+.++|+||+..+++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~----------------~~~~i~D~PGli~ga~~ 222 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY----------------KSFVIADIPGLIEGASE 222 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC----------------cEEEEEeCCCccCCCCc
Confidence 47899999999999999999998888899999999999999988432 24899999999988888
Q ss_pred CCCCcchhhhhHHhhhchhhhhccc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
+.+++.+|+++++.++++++|+|++
T Consensus 223 ~~gLg~~flrhie~a~vlI~ViD~s 247 (335)
T PRK12299 223 GAGLGHRFLKHIERTRLLLHLVDIE 247 (335)
T ss_pred cccHHHHHHHHhhhcCEEEEEEcCC
Confidence 7788889999999999999999985
No 25
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.64 E-value=7.9e-16 Score=135.54 Aligned_cols=59 Identities=41% Similarity=0.601 Sum_probs=50.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
+|+++|.||+|||||||+|||.+..++|||++|.++..|.+.+.+. .+.++|+||+..-
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~-----------------~~~lvDlPG~ysl 60 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQ-----------------QVELVDLPGIYSL 60 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTE-----------------EEEEEE----SSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCc-----------------eEEEEECCCcccC
Confidence 6899999999999999999999988899999999999999998864 4899999998653
No 26
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.63 E-value=8.5e-17 Score=144.35 Aligned_cols=166 Identities=18% Similarity=0.264 Sum_probs=102.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhcc-------CCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFK-------PKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~-------p~~~~~~ 88 (406)
...-.+..|+++||+|+|||||||++++|.++ +.|++|.+.++|.+....+..+. .+..++.
T Consensus 20 dVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl-----------L~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~ 88 (245)
T COG4555 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATL-----------LIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYA 88 (245)
T ss_pred heeEEeccceEEEEEcCCCCCchhHHHHHHHh-----------ccCCCceEEEeecccccChHHHhhhcceecCCcChhh
Confidence 34445778999999999999999999999999 89999999999876544332111 1223333
Q ss_pred eeEEEeeccccc---cccCC------------C-----------CCcchhhhhHHhhhchhhhhcccCCCceEeecCCCC
Q 015465 89 FLEIHDIAGLVR---GAHEG------------Q-----------GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVD 142 (406)
Q Consensus 89 ~i~lvD~~gl~~---~~~~~------------~-----------~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~d 142 (406)
.++.-+...+.. +.... . ++..-+.+.+..|.+++| +|.++++| |
T Consensus 89 RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh------~P~i~vlD---E 159 (245)
T COG4555 89 RLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVH------DPSILVLD---E 159 (245)
T ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhc------CCCeEEEc---C
Confidence 333222211110 00000 0 000111233344444444 99999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
|++++|+.........+.. +..-.+.+..++ |.+++++++||++ .+|++|+.+..|+..
T Consensus 160 P~sGLDi~~~r~~~dfi~q----~k~egr~viFSS-H~m~EvealCDrv-ivlh~Gevv~~gs~~ 218 (245)
T COG4555 160 PTSGLDIRTRRKFHDFIKQ----LKNEGRAVIFSS-HIMQEVEALCDRV-IVLHKGEVVLEGSIE 218 (245)
T ss_pred CCCCccHHHHHHHHHHHHH----hhcCCcEEEEec-ccHHHHHHhhheE-EEEecCcEEEcCCHH
Confidence 9999999974222111111 111011111233 9999999999999 999999999887653
No 27
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=2.7e-16 Score=147.87 Aligned_cols=172 Identities=17% Similarity=0.225 Sum_probs=114.2
Q ss_pred CcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----hhhccCCCC---
Q 015465 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKSA--- 85 (406)
Q Consensus 13 ~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~~~~~p~~~--- 85 (406)
.-.+....+.+|+.++||||||||||||+++++|+ +.|.+|+|.+.|.+.... ...|.||+.
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl-----------l~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d 87 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL-----------LKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVD 87 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CcCCcceEEEccccccccccCCeEEEcCcccccC
Confidence 34455667889999999999999999999999999 889999999998765433 357999963
Q ss_pred cCceeEEEeeccccccccCCC---------CCcchhhhhHHhhhch--------------hhhhccc-CCCceEeecCCC
Q 015465 86 VPAFLEIHDIAGLVRGAHEGQ---------GLGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~~---------~l~~~~l~~l~~ad~l--------------l~vvda~-~~~~il~ld~~~ 141 (406)
....+++.|++.+......+. ......++.+...+.. +.++||+ ++|++++||
T Consensus 88 ~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD--- 164 (254)
T COG1121 88 RSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD--- 164 (254)
T ss_pred CCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec---
Confidence 234478888887764433220 0011112222211111 6678887 899999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||+.++|+-.+..+..-+..+ .+. ...+ .-.+|++..+.+.+|++ ..|+. +++..|+
T Consensus 165 EP~~gvD~~~~~~i~~lL~~l---~~e-g~tI-l~vtHDL~~v~~~~D~v-i~Ln~-~~~~~G~ 221 (254)
T COG1121 165 EPFTGVDVAGQKEIYDLLKEL---RQE-GKTV-LMVTHDLGLVMAYFDRV-ICLNR-HLIASGP 221 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHH---HHC-CCEE-EEEeCCcHHhHhhCCEE-EEEcC-eeEeccC
Confidence 999999999864443322211 111 1111 11239999999999998 66664 4444443
No 28
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.62 E-value=2.7e-17 Score=147.37 Aligned_cols=164 Identities=23% Similarity=0.380 Sum_probs=113.3
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh--------hhccCCC-CcCc
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKS-AVPA 88 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--------~~~~p~~-~~~~ 88 (406)
.-.+++|++||++|||||||||.|.+++|+ +.|++|.|.++|.++..+. ..|.||. +++.
T Consensus 24 sl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl-----------v~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 24 SLEVNSGEIVGLLGPNGAGKTTTFYMIVGL-----------VRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred eEEEcCCcEEEEECCCCCCceeEEEEEEEE-----------EecCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 345789999999999999999999999999 8999999999998875543 3699987 6677
Q ss_pred eeEEEeeccccccccC-CCC------Ccchhh-----hhHHhhhch---------hhhhccc-CCCceEeecCCCCCCch
Q 015465 89 FLEIHDIAGLVRGAHE-GQG------LGNSFL-----SHIRAVDGI---------FHVLRAF-EDPDIIHVDDSVDPVRD 146 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~-~~~------l~~~~l-----~~l~~ad~l---------l~vvda~-~~~~il~ld~~~dP~~~ 146 (406)
.+++-|..-..-.... ... ..+.++ .+++..-+. +.++||. .+|..+.|| ||+.+
T Consensus 93 ~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLD---EPFAG 169 (243)
T COG1137 93 KLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLD---EPFAG 169 (243)
T ss_pred cCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEec---CCccC
Confidence 7777776544322111 000 001111 122221111 4466665 699999999 99999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc-----ccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~-----~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
+|++. ..|+..+.+.+ . .++. .|+..+...+|||+ .++.+|++++.|+.
T Consensus 170 VDPia----V~dIq~iI~~L---~---~rgiGvLITDHNVREtL~i~dRa-YIi~~G~vla~G~p 223 (243)
T COG1137 170 VDPIA----VIDIQRIIKHL---K---DRGIGVLITDHNVRETLDICDRA-YIISDGKVLAEGSP 223 (243)
T ss_pred CCchh----HHHHHHHHHHH---H---hCCceEEEccccHHHHHhhhheE-EEEecCeEEecCCH
Confidence 99987 33333332222 1 1221 29999999999999 88899999988753
No 29
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.62 E-value=5.2e-15 Score=146.18 Aligned_cols=89 Identities=39% Similarity=0.698 Sum_probs=79.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
..|+|||.||||||||||+|++....+++|||||+.|+.|.+.+.+. ..+.++|+||+..+.+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~----------------~~~~i~D~PGli~~a~~ 221 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDG----------------RSFVIADIPGLIEGASE 221 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCc----------------eEEEEEeCCCcccCCcc
Confidence 47899999999999999999998888899999999999999988652 24899999999988887
Q ss_pred CCCCcchhhhhHHhhhchhhhhccc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
..+++..|+++++.++++++|+|+.
T Consensus 222 ~~gLg~~flrhierad~ll~VvD~s 246 (329)
T TIGR02729 222 GAGLGHRFLKHIERTRVLLHLIDIS 246 (329)
T ss_pred cccHHHHHHHHHHhhCEEEEEEcCc
Confidence 7778889999999999999999985
No 30
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=5.4e-15 Score=150.07 Aligned_cols=88 Identities=41% Similarity=0.676 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
.|||||.||||||||||+|++....+++|||||+.|+.|.+.+.+. ..+.++|+||+..+++.+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~----------------~~~~laD~PGliega~~~ 223 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG----------------RSFVMADIPGLIEGASEG 223 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC----------------ceEEEEECCCCccccccc
Confidence 7999999999999999999999888899999999999999988632 248999999999888887
Q ss_pred CCCcchhhhhHHhhhchhhhhccc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
.+++..|+++++.++++++|+|++
T Consensus 224 ~gLg~~fLrhier~~llI~VID~s 247 (424)
T PRK12297 224 VGLGHQFLRHIERTRVIVHVIDMS 247 (424)
T ss_pred chHHHHHHHHHhhCCEEEEEEeCC
Confidence 788899999999999999999985
No 31
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.59 E-value=9.5e-16 Score=141.27 Aligned_cols=169 Identities=23% Similarity=0.318 Sum_probs=113.3
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-----------hccCCCC
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----------LFKPKSA 85 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----------~~~p~~~ 85 (406)
..-+|.+|++++|+|++|+|||||++.+.|+ +.|++|.|.+.|.++..+++ ....+..
T Consensus 27 v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl-----------l~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 27 VDLDVPRGEILAILGGSGSGKSTLLRLILGL-----------LRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred ceeeecCCcEEEEECCCCcCHHHHHHHHhcc-----------CCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 3456889999999999999999999999999 89999999999998766553 1222345
Q ss_pred cCceeEEEeeccccccccCCCCCcchhhh-----hHHh-------hhc-----------hhhhhccc-CCCceEeecCCC
Q 015465 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLS-----HIRA-------VDG-----------IFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~~~l~~~~l~-----~l~~-------ad~-----------ll~vvda~-~~~~il~ld~~~ 141 (406)
.+..++++|+.++.-..+.. +.....+ .+.. ++. -+.++||. -+|+++++|
T Consensus 96 LFssltV~eNVafplre~~~--lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~D--- 170 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTK--LPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLD--- 170 (263)
T ss_pred cccccchhHhhheehHhhcc--CCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEec---
Confidence 66778888888875322221 1111100 0000 000 02344554 599999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHH-HHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIED-VEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~-~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
||++++|++....... +.+.++. +.-+. .-.+|++..+..+||++ .+|.+|+++..|+..
T Consensus 171 EPtsGLDPI~a~~~~~----LI~~L~~~lg~T~-i~VTHDl~s~~~i~Drv-~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 171 EPTSGLDPISAGVIDE----LIRELNDALGLTV-IMVTHDLDSLLTIADRV-AVLADGKVIAEGTPE 231 (263)
T ss_pred CCCCCCCcchHHHHHH----HHHHHHHhhCCEE-EEEECChHHHHhhhceE-EEEeCCEEEEeCCHH
Confidence 9999999998533322 2222211 11111 11249999999999999 999999999887643
No 32
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.59 E-value=1.8e-16 Score=146.58 Aligned_cols=165 Identities=18% Similarity=0.218 Sum_probs=105.8
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhh-------c-cCCC-CcCc
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQL-------F-KPKS-AVPA 88 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~-------~-~p~~-~~~~ 88 (406)
.-.+.+|+++||||||||||||+||++||. ++|++|+|.+.|.++..+... . .-|. +++.
T Consensus 24 sl~v~~Gei~~LIGPNGAGKTTlfNlitG~-----------~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 24 SLEVRPGEIVGLIGPNGAGKTTLFNLITGF-----------YKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred eEEEcCCeEEEEECCCCCCceeeeeeeccc-----------ccCCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 345789999999999999999999999999 889999999999987655421 0 0122 4455
Q ss_pred eeEEEeeccccccccC--------------CCCCcchhhhhHHhh-----------------hchhhhhccc-CCCceEe
Q 015465 89 FLEIHDIAGLVRGAHE--------------GQGLGNSFLSHIRAV-----------------DGIFHVLRAF-EDPDIIH 136 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~--------------~~~l~~~~l~~l~~a-----------------d~ll~vvda~-~~~~il~ 136 (406)
.+++.|..-+....+. ......+....+..+ .-.+.+.+|. .+|+++.
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLL 172 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLL 172 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEE
Confidence 5677775544311110 000000000001100 0125566776 7999999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccc-----cchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~-----h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
|| ||..++..-+.+- +...+.++.+. .+.+ |++..+-.+||+| ..|+.|++++.|+.
T Consensus 173 LD---EPaAGln~~e~~~-------l~~~i~~i~~~--~g~tillIEHdM~~Vm~l~dri-~Vl~~G~~IAeG~P 234 (250)
T COG0411 173 LD---EPAAGLNPEETEE-------LAELIRELRDR--GGVTILLIEHDMKLVMGLADRI-VVLNYGEVIAEGTP 234 (250)
T ss_pred ec---CccCCCCHHHHHH-------HHHHHHHHHhc--CCcEEEEEEeccHHHhhhccEE-EeccCCcCcccCCH
Confidence 99 9998887776322 11222222211 1122 9999999999999 99999999998753
No 33
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.57 E-value=6.6e-16 Score=151.33 Aligned_cols=172 Identities=16% Similarity=0.248 Sum_probs=108.1
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------hhhccCCC-CcC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPKS-AVP 87 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~~~~~p~~-~~~ 87 (406)
.+....+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++... ...|.||. ..+
T Consensus 24 ~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl-----------~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~ 92 (306)
T PRK13537 24 DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-----------THPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLD 92 (306)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEecccchHHHHhcEEEEeccCcCC
Confidence 344566889999999999999999999999999 789999999999875321 12566766 344
Q ss_pred ceeEEEeeccccccccC--CC---CCcchhhhhHHh--------------hhchhhhhccc-CCCceEeecCCCCCCchH
Q 015465 88 AFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~--~~---~l~~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~~dP~~~l 147 (406)
..+++.|...+...... .. .....+++.++. ..--+.+++|+ .+|+++++| ||++++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLD---EPt~gL 169 (306)
T PRK13537 93 PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD---EPTTGL 169 (306)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEe---CCCcCC
Confidence 44565555443211100 00 000000100000 00013455555 699999999 999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
|+.........+.. +..-...+..+ +|++.+++.+||++ .+|++|+++..++.
T Consensus 170 D~~~~~~l~~~l~~----l~~~g~till~-sH~l~e~~~~~d~i-~il~~G~i~~~g~~ 222 (306)
T PRK13537 170 DPQARHLMWERLRS----LLARGKTILLT-THFMEEAERLCDRL-CVIEEGRKIAEGAP 222 (306)
T ss_pred CHHHHHHHHHHHHH----HHhCCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 99986433322211 11001111112 39999999999999 99999999877653
No 34
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.57 E-value=3e-15 Score=115.84 Aligned_cols=64 Identities=20% Similarity=0.121 Sum_probs=54.0
Q ss_pred cEEEeecC-----------CCCeeeEEecCCCCcchhcccchhhhhhccEEEEEeccchhhhcCChHHHhhcCceeeeee
Q 015465 304 LIYFFTAG-----------PDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKVNVLISRFII 372 (406)
Q Consensus 304 li~~fT~g-----------~~e~raw~i~~gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~~~ 372 (406)
||++||+. |++.+||++++|+||+|+|++||+||+++|++|+||+ .|.-|.
T Consensus 1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~------------------~~~vg~ 62 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGR------------------RRLEGK 62 (76)
T ss_pred CEEEEEcCCCccccCcCCCCccceeEEEcCCCCHHHHHHHHhHHHHhccEEEEEcc------------------CEEECC
Confidence 68899953 5678999999999999999999999999999999998 344555
Q ss_pred eeeeeccCCCccccCCCcEEEEE
Q 015465 373 IISILSCPSCHCKSTEFACHWLR 395 (406)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
. +..+++|+..|.
T Consensus 63 d----------~~l~d~DVv~i~ 75 (76)
T cd04938 63 D----------VILGKNDILKFK 75 (76)
T ss_pred C----------EEecCCCEEEEE
Confidence 5 777888887764
No 35
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.57 E-value=7.8e-16 Score=152.81 Aligned_cols=171 Identities=16% Similarity=0.220 Sum_probs=106.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------hhhccCCC-CcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPKS-AVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~~~~~p~~-~~~~ 88 (406)
+....+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++... ...|.||. ..+.
T Consensus 59 ~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~ 127 (340)
T PRK13536 59 GLSFTVASGECFGLLGPNGAGKSTIARMILGM-----------TSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDL 127 (340)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCceEEEECCEECCcchHHHhccEEEEeCCccCCC
Confidence 34456889999999999999999999999999 789999999999765321 12466655 3334
Q ss_pred eeEEEeeccccccccCC-----CCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCchHH
Q 015465 89 FLEIHDIAGLVRGAHEG-----QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~-----~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld 148 (406)
.+++.|...+....... ......+++.++.. .-.+.+++|+ .+|+++++| ||++++|
T Consensus 128 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD---EPt~gLD 204 (340)
T PRK13536 128 EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD---EPTTGLD 204 (340)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCCC
Confidence 45555543321110000 00000011100000 0013455555 699999999 9999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
+.........+.. +..-...+..+ +|++.+++.+|+++ .+|++|+++..++.
T Consensus 205 ~~~r~~l~~~l~~----l~~~g~tilis-SH~l~e~~~~~d~i-~il~~G~i~~~g~~ 256 (340)
T PRK13536 205 PHARHLIWERLRS----LLARGKTILLT-THFMEEAERLCDRL-CVLEAGRKIAEGRP 256 (340)
T ss_pred HHHHHHHHHHHHH----HHhCCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 9986433222211 11101111112 39999999999999 89999999887654
No 36
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.4e-14 Score=131.25 Aligned_cols=161 Identities=14% Similarity=0.272 Sum_probs=110.2
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCC-CcCceeE
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS-AVPAFLE 91 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~-~~~~~i~ 91 (406)
.+.+|+..+|+||||||||||++.|+|. ..|++|.+.++|.++..+. ....||. .+-+.++
T Consensus 23 ~~~pGev~ailGPNGAGKSTlLk~LsGe-----------l~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 23 DLRPGEVLAILGPNGAGKSTLLKALSGE-----------LSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred eccCCcEEEEECCCCccHHHHHHHhhCc-----------cCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 4678999999999999999999999999 8899999999998875543 2467776 4556688
Q ss_pred EEeeccccccccCCCCC---cch-hh------------------------hhHHhhhchhhhhcccCCCceEeecCCCCC
Q 015465 92 IHDIAGLVRGAHEGQGL---GNS-FL------------------------SHIRAVDGIFHVLRAFEDPDIIHVDDSVDP 143 (406)
Q Consensus 92 lvD~~gl~~~~~~~~~l---~~~-~l------------------------~~l~~ad~ll~vvda~~~~~il~ld~~~dP 143 (406)
+.|+..++.-++..... ..+ .. +++..+.++..+-..-.++.++++| ||
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LD---EP 168 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLD---EP 168 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEec---CC
Confidence 88888887655432110 000 01 1222222222222223445688999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccc-----cchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~-----h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|+-.+.-.+. ..+.....+.. |+++.....||+| -.|.+|+++..|.
T Consensus 169 tsaLDi~HQ~~tl~----------laR~la~~g~~V~~VLHDLNLAA~YaDri-vll~~Grv~a~g~ 224 (259)
T COG4559 169 TSALDIAHQHHTLR----------LARQLAREGGAVLAVLHDLNLAAQYADRI-VLLHQGRVIASGS 224 (259)
T ss_pred ccccchHHHHHHHH----------HHHHHHhcCCcEEEEEccchHHHHhhhee-eeeeCCeEeecCC
Confidence 99999988633322 22223323322 9999999999999 9999999998754
No 37
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=4.4e-15 Score=137.46 Aligned_cols=174 Identities=21% Similarity=0.381 Sum_probs=104.4
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh--hhhhhccCCCCcCceeEE
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--WLCQLFKPKSAVPAFLEI 92 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~--~l~~~~~p~~~~~~~i~l 92 (406)
.+..-.+.+|+.+||||+||||||||+++|+|. +.|++|.+.+.|.-.. .+...+.|+-+...++.+
T Consensus 44 ~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi-----------~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l 112 (249)
T COG1134 44 KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI-----------YKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYL 112 (249)
T ss_pred cCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc-----------cCCCCceEEEcceEehhhhcccCCCcccchHHHHHH
Confidence 344556789999999999999999999999999 8899999999986321 223344443221111111
Q ss_pred Ee-eccccccccCC--------CCCcchhhhhHHhhhchhh-----hhcccCCCceEeecCCCCCCchHHHHHHHHhhhh
Q 015465 93 HD-IAGLVRGAHEG--------QGLGNSFLSHIRAVDGIFH-----VLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKD 158 (406)
Q Consensus 93 vD-~~gl~~~~~~~--------~~l~~~~l~~l~~ad~ll~-----vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~d 158 (406)
.- ..|+.+..... .+++..+...++....-+. -+....+|+++++| +.+...|
T Consensus 113 ~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllD-------------EvlavGD 179 (249)
T COG1134 113 RGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLD-------------EVLAVGD 179 (249)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEe-------------hhhhcCC
Confidence 10 01111000000 0111111111111111111 12223477777777 2344566
Q ss_pred HHHHHHHHHHHHHHhhhcc-----ccchHHHHHHHHHHHHHhhCCCccccCCCChhHHHHHHHh
Q 015465 159 IEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTF 217 (406)
Q Consensus 159 i~~l~k~l~~~~~~~~~~~-----~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t~~e~e~i~~~ 217 (406)
..+.+|..+++...+..+. +|++..+.++|+++ .+|+.|++...|+.. +.+..|
T Consensus 180 ~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~-i~l~~G~i~~~G~~~----~vi~~Y 238 (249)
T COG1134 180 AAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRA-IWLEHGQIRMEGSPE----EVIPAY 238 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCee-EEEeCCEEEEcCCHH----HHHHHH
Confidence 6777787777777654443 29999999999999 999999998887654 455555
No 38
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.52 E-value=3e-15 Score=146.45 Aligned_cols=170 Identities=15% Similarity=0.232 Sum_probs=104.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------hhhccCCC-CcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPKS-AVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~~~~~p~~-~~~~ 88 (406)
+....+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++... ...|.||. ..+.
T Consensus 11 ~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 11 GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL-----------LRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 34456889999999999999999999999999 789999999998765321 12456665 3333
Q ss_pred eeEEEeecccccccc---CC--CCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCchHH
Q 015465 89 FLEIHDIAGLVRGAH---EG--QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~---~~--~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld 148 (406)
.+++.|...+..... .. ......+++.+... .-.+.+++|+ .+|+++++| ||++++|
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~gLD 156 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD---EPTTGLD 156 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCC
Confidence 444444332211000 00 00000011111000 0014455555 799999999 9999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+...+.....+.. +..-...+.. .+|++..+..+|+++ .+|++|+++..++
T Consensus 157 ~~~~~~l~~~l~~----~~~~g~tvi~-~sH~~~~~~~~~d~v-~~l~~G~i~~~g~ 207 (302)
T TIGR01188 157 PRTRRAIWDYIRA----LKEEGVTILL-TTHYMEEADKLCDRI-AIIDHGRIIAEGT 207 (302)
T ss_pred HHHHHHHHHHHHH----HHhCCCEEEE-ECCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9986433332211 1100111111 139999999999999 8899999887664
No 39
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.51 E-value=9.2e-15 Score=135.65 Aligned_cols=173 Identities=18% Similarity=0.270 Sum_probs=114.3
Q ss_pred cCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCC-C
Q 015465 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS-A 85 (406)
Q Consensus 14 ~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~-~ 85 (406)
-......++.|+.+.+|||+||||||+++++.++ ++|++|.|.++|.++..+. .+|.-|. .
T Consensus 17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL-----------iept~G~I~i~g~~i~~~d~~~LRr~IGYviQqig 85 (309)
T COG1125 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL-----------IEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIG 85 (309)
T ss_pred eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc-----------cCCCCceEEECCeecccCCHHHHHHhhhhhhhhcc
Confidence 3445556899999999999999999999999999 8999999999998764422 2455554 4
Q ss_pred cCceeEEEeeccccccccCCC---------------CC-----cchhhhhHH-hhhchhhhhccc-CCCceEeecCCCCC
Q 015465 86 VPAFLEIHDIAGLVRGAHEGQ---------------GL-----GNSFLSHIR-AVDGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~~---------------~l-----~~~~l~~l~-~ad~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.+..+++.++..++....+.. ++ ..++-..+. .-.--+-|+||. .+|+++.+| ||
T Consensus 86 LFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD---EP 162 (309)
T COG1125 86 LFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD---EP 162 (309)
T ss_pred cCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec---CC
Confidence 455566555544443222100 00 000000000 001114577776 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|++++.-...++..+.+.+ .+++ .-.+|++.+...|.||| .++.+|+++..++
T Consensus 163 FgALDpI~R~~lQ~e~~~lq~~l---~kTi-vfVTHDidEA~kLadri-~vm~~G~i~Q~~~ 219 (309)
T COG1125 163 FGALDPITRKQLQEEIKELQKEL---GKTI-VFVTHDIDEALKLADRI-AVMDAGEIVQYDT 219 (309)
T ss_pred ccccChhhHHHHHHHHHHHHHHh---CCEE-EEEecCHHHHHhhhceE-EEecCCeEEEeCC
Confidence 99999999766555543333322 2222 11249999999999999 9999999886543
No 40
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.51 E-value=5.4e-15 Score=137.62 Aligned_cols=164 Identities=18% Similarity=0.208 Sum_probs=103.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh--hhccCCC-CcCceeEE
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKS-AVPAFLEI 92 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~p~~-~~~~~i~l 92 (406)
+..-.+.+|+.++||||+|||||||||+++|+ ..|++|.|.++|.++..-. ..|+.|+ ....+.++
T Consensus 21 ~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL-----------~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv 89 (248)
T COG1116 21 DINLSVEKGEFVAILGPSGCGKSTLLRLIAGL-----------EKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTV 89 (248)
T ss_pred cceeEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCcccCCCCCCEEEEeccCcccchhhH
Confidence 34456889999999999999999999999999 7899999999998752211 1345554 45556666
Q ss_pred EeeccccccccC---C--CCCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCchHHHHHH
Q 015465 93 HDIAGLVRGAHE---G--QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (406)
Q Consensus 93 vD~~gl~~~~~~---~--~~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~ 152 (406)
.|+..+.-.... . ......+++.+..++. -+.++||. .+|+++.+| ||+..+|.+.+
T Consensus 90 ~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlD---EPFgALDalTR 166 (248)
T COG1116 90 LDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLD---EPFGALDALTR 166 (248)
T ss_pred HhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEc---CCcchhhHHHH
Confidence 666655422210 0 0000111111111000 13345555 599999999 99999999997
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCC
Q 015465 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (406)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g 198 (406)
+....++ .+.|.+.+..+ .-.+|+.++.-.+.||| -+|..+
T Consensus 167 ~~lq~~l---~~lw~~~~~Tv-llVTHdi~EAv~LsdRi-vvl~~~ 207 (248)
T COG1116 167 EELQDEL---LRLWEETRKTV-LLVTHDVDEAVYLADRV-VVLSNR 207 (248)
T ss_pred HHHHHHH---HHHHHhhCCEE-EEEeCCHHHHHhhhCEE-EEecCC
Confidence 6555443 33343322222 11249999998899988 666554
No 41
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=2.7e-14 Score=136.11 Aligned_cols=166 Identities=19% Similarity=0.306 Sum_probs=103.9
Q ss_pred cCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh----------hccCC
Q 015465 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ----------LFKPK 83 (406)
Q Consensus 14 ~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~----------~~~p~ 83 (406)
-.+..-.|+.|+++||||++|||||||++++.++ -+|++|.|.++|.++..+.. .+..|
T Consensus 22 l~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L-----------e~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQ 90 (339)
T COG1135 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL-----------ERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQ 90 (339)
T ss_pred eccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc-----------CCCCCceEEEcCEecccCChHHHHHHHhhccEEec
Confidence 3345566899999999999999999999999999 68999999999977644332 11111
Q ss_pred C-CcCceeEEE-------------------------eeccccccccC---CCCCcchhhhhHHhhhchhhhhccc-CCCc
Q 015465 84 S-AVPAFLEIH-------------------------DIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAF-EDPD 133 (406)
Q Consensus 84 ~-~~~~~i~lv-------------------------D~~gl~~~~~~---~~~l~~~~l~~l~~ad~ll~vvda~-~~~~ 133 (406)
. ......++. +.+|+...... ..+-|.+ +++ .++||. .+|+
T Consensus 91 hFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQK--QRV-------aIARALa~~P~ 161 (339)
T COG1135 91 HFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQK--QRV-------AIARALANNPK 161 (339)
T ss_pred cccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchh--hHH-------HHHHHHhcCCC
Confidence 1 111111222 22222211110 1111222 333 344554 5999
Q ss_pred eEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 134 il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
+++.| ||++.+|+-...-++.-+..+.+.+ .-++ .-.+|.|+-+.++|+|+ .+|++|+++-.|++.
T Consensus 162 iLL~D---EaTSALDP~TT~sIL~LL~~In~~l---glTI-vlITHEm~Vvk~ic~rV-avm~~G~lvE~G~v~ 227 (339)
T COG1135 162 ILLCD---EATSALDPETTQSILELLKDINREL---GLTI-VLITHEMEVVKRICDRV-AVLDQGRLVEEGTVS 227 (339)
T ss_pred EEEec---CccccCChHHHHHHHHHHHHHHHHc---CCEE-EEEechHHHHHHHhhhh-eEeeCCEEEEeccHH
Confidence 99999 8999999887644443322222211 1111 01249999999999999 999999998777654
No 42
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.49 E-value=3.1e-14 Score=129.47 Aligned_cols=164 Identities=19% Similarity=0.259 Sum_probs=108.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh------hh--hhccCCC-Cc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC--QLFKPKS-AV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------l~--~~~~p~~-~~ 86 (406)
.....+.+|+++.|+||+|||||||+++|.++ -.|++|.|.++|..+.. +. .++..|. ..
T Consensus 20 gi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L-----------E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnL 88 (240)
T COG1126 20 GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL-----------EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNL 88 (240)
T ss_pred CcceeEcCCCEEEEECCCCCCHHHHHHHHHCC-----------cCCCCceEEECCEeccchhhHHHHHHhcCeecccccc
Confidence 33446889999999999999999999999999 67999999999964321 11 1233333 45
Q ss_pred CceeEEEeeccccccccCC------CCCcchhhhhHHhhhch--------------hhhhccc-CCCceEeecCCCCCCc
Q 015465 87 PAFLEIHDIAGLVRGAHEG------QGLGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~~------~~l~~~~l~~l~~ad~l--------------l~vvda~-~~~~il~ld~~~dP~~ 145 (406)
+..+++.|+.-+..-..++ ......+++.+..+|-. +.++||. -+|+++.+| ||++
T Consensus 89 FPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD---EPTS 165 (240)
T COG1126 89 FPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD---EPTS 165 (240)
T ss_pred cccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec---CCcc
Confidence 5567777655443211111 11122223332222211 4566776 799999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc-----ccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~-----~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
.+|+.- +...++.+......+- +|.+....++.||+ .++++|+++..+
T Consensus 166 ALDPEl----------v~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadrv-iFmd~G~iie~g 218 (240)
T COG1126 166 ALDPEL----------VGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRV-IFMDQGKIIEEG 218 (240)
T ss_pred cCCHHH----------HHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheE-EEeeCCEEEEec
Confidence 999875 2333444444443332 49999999999999 999999877665
No 43
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.48 E-value=9.1e-15 Score=143.01 Aligned_cols=170 Identities=16% Similarity=0.205 Sum_probs=105.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------hhhccCCC-CcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPKS-AVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~~~~~p~~-~~~~ 88 (406)
+....+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++... ...|.|+. ..+.
T Consensus 20 ~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl-----------~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~ 88 (301)
T TIGR03522 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY-----------LPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYL 88 (301)
T ss_pred EeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccChHHHHhceEEecCCCCCCC
Confidence 34456889999999999999999999999999 789999999999765321 12466665 3444
Q ss_pred eeEEEeeccccccccC---C--CCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCchHH
Q 015465 89 FLEIHDIAGLVRGAHE---G--QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~---~--~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld 148 (406)
.+++.|...+...... . ......++..+... .--+.+++|. .+|+++++| ||++++|
T Consensus 89 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD---EPt~gLD 165 (301)
T TIGR03522 89 DMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD---EPTTGLD 165 (301)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCC
Confidence 4555554332111000 0 00000011100000 0013455555 799999999 9999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
+...+....-+.. +.. ...+.. .+|++.++.++|+++ .+|++|++...|+.
T Consensus 166 ~~~~~~l~~~l~~----~~~-~~tiii-~sH~l~~~~~~~d~i-~~l~~G~i~~~g~~ 216 (301)
T TIGR03522 166 PNQLVEIRNVIKN----IGK-DKTIIL-STHIMQEVEAICDRV-IIINKGKIVADKKL 216 (301)
T ss_pred HHHHHHHHHHHHH----hcC-CCEEEE-EcCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 9986433332211 110 111111 139999999999999 99999999877654
No 44
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.48 E-value=7.7e-14 Score=128.38 Aligned_cols=180 Identities=20% Similarity=0.220 Sum_probs=108.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh----------hccCCC-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ----------LFKPKS- 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~----------~~~p~~- 84 (406)
...-.+++|+.++|||++||||||||++|.|. .+|+.|.|.++|.++..+.. ++..|.
T Consensus 22 ~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-----------~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~ 90 (258)
T COG3638 22 DVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-----------VDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQF 90 (258)
T ss_pred eEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-----------cCCCcceEEecccchhccchHHHHHHHHhceeEeccC
Confidence 33446889999999999999999999999998 89999999999976543321 111111
Q ss_pred CcCceeEEEeeccccccccCC-----CCCc-----chhhhhHHh----------hhch-------hhhhccc-CCCceEe
Q 015465 85 AVPAFLEIHDIAGLVRGAHEG-----QGLG-----NSFLSHIRA----------VDGI-------FHVLRAF-EDPDIIH 136 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~~~~~-----~~l~-----~~~l~~l~~----------ad~l-------l~vvda~-~~~~il~ 136 (406)
.+...+.++..+-.+.-.+.. .++- ...++.+.. ++-+ +.++|+. ++|+++.
T Consensus 91 nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiIL 170 (258)
T COG3638 91 NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIIL 170 (258)
T ss_pred CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEe
Confidence 111122223222221111110 0000 001111111 1111 4566776 7999999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCCChhHHHHH
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEIL 214 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t~~e~e~i 214 (406)
.| ||+..+|+.+.+..+.++..+.+.. ...+... -|..+-..+-|+|+ .-|.+|+++++|+.++-..+.+
T Consensus 171 AD---EPvasLDp~~a~~Vm~~l~~in~~~---g~Tvi~n-LH~vdlA~~Y~~Ri-igl~~G~ivfDg~~~el~~~~~ 240 (258)
T COG3638 171 AD---EPVASLDPESAKKVMDILKDINQED---GITVIVN-LHQVDLAKKYADRI-IGLKAGRIVFDGPASELTDEAL 240 (258)
T ss_pred cC---CcccccChhhHHHHHHHHHHHHHHc---CCEEEEE-echHHHHHHHHhhh-eEecCCcEEEeCChhhhhHHHH
Confidence 89 9999999999766655543322210 0011001 19999999999999 8899999999987654333333
No 45
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.47 E-value=2.4e-14 Score=144.82 Aligned_cols=170 Identities=16% Similarity=0.276 Sum_probs=106.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCC-CcC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS-AVP 87 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~-~~~ 87 (406)
+....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++..+. ..|.+|. ..+
T Consensus 21 ~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl-----------l~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~ 89 (402)
T PRK09536 21 GVDLSVREGSLVGLVGPNGAGKTTLLRAINGT-----------LTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLS 89 (402)
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCC
Confidence 34456789999999999999999999999999 7899999999997654321 1455665 333
Q ss_pred ceeEEEeeccccccccCC------C---CCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCC
Q 015465 88 AFLEIHDIAGLVRGAHEG------Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~~------~---~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP 143 (406)
..+++.|...+....+.+ . ......++.+...+ -.+.+++++ ++|+++++| ||
T Consensus 90 ~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLD---EP 166 (402)
T PRK09536 90 FEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD---EP 166 (402)
T ss_pred CCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CC
Confidence 445555554433211100 0 00000111110000 014456666 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|+......+..+.. +.+....+.. .+|++..+.++|+++ .+|++|+++..|+
T Consensus 167 tsgLD~~~~~~l~~lL~~----l~~~g~TIIi-vsHdl~~~~~~adri-i~l~~G~iv~~G~ 222 (402)
T PRK09536 167 TASLDINHQVRTLELVRR----LVDDGKTAVA-AIHDLDLAARYCDEL-VLLADGRVRAAGP 222 (402)
T ss_pred cccCCHHHHHHHHHHHHH----HHhcCCEEEE-EECCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 999999886443332221 1110111111 139999999999999 8899999887764
No 46
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.47 E-value=1.7e-14 Score=141.28 Aligned_cols=170 Identities=17% Similarity=0.270 Sum_probs=103.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------hhhccCCC-CcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPKS-AVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~~~~~p~~-~~~~ 88 (406)
+....+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++... ...|.||. ..+.
T Consensus 22 ~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (303)
T TIGR01288 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGM-----------ISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDP 90 (303)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECcccHHHHhhcEEEEeccccCCc
Confidence 44456889999999999999999999999999 779999999998754211 12455655 2333
Q ss_pred eeEEEeecccccc---ccCC--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHH
Q 015465 89 FLEIHDIAGLVRG---AHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (406)
Q Consensus 89 ~i~lvD~~gl~~~---~~~~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld 148 (406)
.+++.|...+... .... ......+++.+...+ -.+.+++++ .+|+++++| ||++++|
T Consensus 91 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~gLD 167 (303)
T TIGR01288 91 EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILD---EPTTGLD 167 (303)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCC
Confidence 3444444322110 0000 000000111110000 014455555 799999999 9999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+...+.....+..+ ..-...+.. .+|+...+..+|+++ .+|.+|+++..++
T Consensus 168 ~~~~~~l~~~l~~~----~~~g~til~-~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 218 (303)
T TIGR01288 168 PHARHLIWERLRSL----LARGKTILL-TTHFMEEAERLCDRL-CVLESGRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHHHHH----HhCCCEEEE-ECCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 99864433322111 000111111 139999999999999 8899999887664
No 47
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.47 E-value=5.3e-14 Score=135.46 Aligned_cols=193 Identities=19% Similarity=0.097 Sum_probs=119.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.|+|+|+||||||||+|+|+|.... ++++|+||..+..|.....+ .++.++||||+....+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-----------------~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-----------------SQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-----------------cEEEEEECcCCCCCcch
Confidence 6899999999999999999999865 48999999998887765543 24899999998764322
Q ss_pred C-CCCcchhhhhHHhhhchhhhhcccCCCce----E-eecCCCCCC----chHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 015465 105 G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDI----I-HVDDSVDPV----RDLEVISAELRLKDIEFMERRIEDVEKSMK 174 (406)
Q Consensus 105 ~-~~l~~~~l~~l~~ad~ll~vvda~~~~~i----l-~ld~~~dP~----~~ld~i~~el~~~di~~l~k~l~~~~~~~~ 174 (406)
. ..+.......++.+|++++|+|+...... + .+....-|. +..|..+.+........+.+.. .....+.
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~-~~~~v~~ 143 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILE-DFKDIVP 143 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhc-CCCceEE
Confidence 1 11222345667899999999998632210 0 000000111 1112111110000000000000 0001111
Q ss_pred hccccchHHHHHHHHHHHHHhhCCCcccc-CCCChhH-----HHHHHHh-hhhccccEEeeeccchhhhh
Q 015465 175 RSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDYQ 237 (406)
Q Consensus 175 ~~~~h~~~~v~~l~~~i~~~L~~g~~~~~-~~~t~~e-----~e~i~~~-~~~~~kpi~~~~N~~~~~~~ 237 (406)
.| +....+++.+.+.+...|+.+...++ ...|+.+ .|++|+. +....++++|.+.+..+.+.
T Consensus 144 iS-A~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~ 212 (270)
T TIGR00436 144 IS-ALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKS 212 (270)
T ss_pred Ee-cCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEE
Confidence 22 25677888999999999999988765 4455543 3788888 56889999999987766554
No 48
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.46 E-value=3.8e-14 Score=139.56 Aligned_cols=175 Identities=15% Similarity=0.194 Sum_probs=117.4
Q ss_pred CcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-----hccCCC-Cc
Q 015465 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPKS-AV 86 (406)
Q Consensus 13 ~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----~~~p~~-~~ 86 (406)
+-......+.+|+.+.|+||+||||||+|++|+|. ..|++|.|.++|+++..+.. .++.|. .+
T Consensus 20 av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf-----------e~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YAL 88 (352)
T COG3842 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF-----------EQPSSGEILLDGEDITDVPPEKRPIGMVFQSYAL 88 (352)
T ss_pred EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhhcccceeecCccc
Confidence 34456667899999999999999999999999999 68999999999998876553 444455 56
Q ss_pred CceeEEEeeccccccccCC---CC---CcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCc
Q 015465 87 PAFLEIHDIAGLVRGAHEG---QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~~---~~---l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
+..+++.|+.++.-...+. .. ...++++.++..+ --+.++||. .+|.++.+| ||++
T Consensus 89 FPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLD---EPlS 165 (352)
T COG3842 89 FPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLD---EPLS 165 (352)
T ss_pred CCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhc---Cccc
Confidence 7778888888776441110 00 1111111111111 014466666 689999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
.+|.--++.....+..+.+. .+... .-.+|+.++...+.||| .++++|++...|+.
T Consensus 166 aLD~kLR~~mr~Elk~lq~~---~giT~-i~VTHDqeEAl~msDrI-~Vm~~G~I~Q~gtP 221 (352)
T COG3842 166 ALDAKLREQMRKELKELQRE---LGITF-VYVTHDQEEALAMSDRI-AVMNDGRIEQVGTP 221 (352)
T ss_pred chhHHHHHHHHHHHHHHHHh---cCCeE-EEEECCHHHHhhhccce-EEccCCceeecCCH
Confidence 88877654333332222211 11110 11249999999999999 99999998876643
No 49
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.46 E-value=2.1e-13 Score=136.24 Aligned_cols=87 Identities=31% Similarity=0.345 Sum_probs=72.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
.+|+|||+||+|||||||.|+|...++ +++|++|+++..|...+.+.+ +.++||+|+.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~-----------------f~lIDTgGl~~~~~ 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE-----------------FILIDTGGLDDGDE 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce-----------------EEEEECCCCCcCCc
Confidence 579999999999999999999998876 999999999999999998764 89999999985442
Q ss_pred --CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 --EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 --~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
-...+..+.+..+..||++++|+|+
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~ 93 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDG 93 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeC
Confidence 1233445666777888888888776
No 50
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=3.8e-14 Score=133.48 Aligned_cols=171 Identities=21% Similarity=0.236 Sum_probs=102.5
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------h--hhccCCC-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS- 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~p~~- 84 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~ 86 (235)
T cd03261 18 GVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL-----------LRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSG 86 (235)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccChhhHHHHhcceEEEccCc
Confidence 34456889999999999999999999999999 779999999998764321 1 1355554
Q ss_pred CcCceeEEEeeccccccccCC---C---CCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCC
Q 015465 85 AVPAFLEIHDIAGLVRGAHEG---Q---GLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~~~~~---~---~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.....+++.|...+....... . .....+++.+... .-.+.+++++ .+|+++++| ||
T Consensus 87 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllD---EP 163 (235)
T cd03261 87 ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYD---EP 163 (235)
T ss_pred ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CC
Confidence 222234444443321100000 0 0000011111000 0014455665 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|....+.....+..+. ......+ .-.+|+...+..+||++ .+|++|+++..++
T Consensus 164 t~~LD~~~~~~l~~~l~~~~---~~~~~tv-i~vsH~~~~~~~~~d~v-~~l~~G~i~~~g~ 220 (235)
T cd03261 164 TAGLDPIASGVIDDLIRSLK---KELGLTS-IMVTHDLDTAFAIADRI-AVLYDGKIVAEGT 220 (235)
T ss_pred cccCCHHHHHHHHHHHHHHH---HhcCcEE-EEEecCHHHHHHhcCEE-EEEECCeEEEecC
Confidence 99999988644433322111 0001111 11239999999999999 8889998876553
No 51
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.46 E-value=4.7e-14 Score=127.86 Aligned_cols=148 Identities=18% Similarity=0.270 Sum_probs=92.1
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh--------hhccCCCC---
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKSA--- 85 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--------~~~~p~~~--- 85 (406)
....+.+|+.++|+|+||||||||+++|+|. ..|++|.+.++|.++.... ..|.++..
T Consensus 19 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (182)
T cd03215 19 VSFEVRAGEIVGIAGLVGNGQTELAEALFGL-----------RPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKRE 87 (182)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccC
Confidence 3456789999999999999999999999999 6799999999987653221 12334331
Q ss_pred -cCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHH
Q 015465 86 -VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 164 (406)
Q Consensus 86 -~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k 164 (406)
.....++.|...+... .+.|++ +++..+-+++ .+|+++++| ||++.+|....+....-
T Consensus 88 ~~~~~~t~~e~l~~~~~----LS~G~~--qrl~la~al~------~~p~llllD---EP~~~LD~~~~~~l~~~------ 146 (182)
T cd03215 88 GLVLDLSVAENIALSSL----LSGGNQ--QKVVLARWLA------RDPRVLILD---EPTRGVDVGAKAEIYRL------ 146 (182)
T ss_pred cccCCCcHHHHHHHHhh----cCHHHH--HHHHHHHHHc------cCCCEEEEC---CCCcCCCHHHHHHHHHH------
Confidence 1222233332221110 111222 3344444444 499999999 99999999986443332
Q ss_pred HHHHHHH---HhhhccccchHHHHHHHHHHHHHhhCCC
Q 015465 165 RIEDVEK---SMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (406)
Q Consensus 165 ~l~~~~~---~~~~~~~h~~~~v~~l~~~i~~~L~~g~ 199 (406)
+..+.. .+ .-.+|+...+.++|+++ .+|++|+
T Consensus 147 -l~~~~~~~~ti-ii~sh~~~~~~~~~d~v-~~l~~G~ 181 (182)
T cd03215 147 -IRELADAGKAV-LLISSELDELLGLCDRI-LVMYEGR 181 (182)
T ss_pred -HHHHHHCCCEE-EEEeCCHHHHHHhCCEE-EEecCCc
Confidence 222211 11 11139988899999988 6666664
No 52
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.46 E-value=7.8e-14 Score=128.18 Aligned_cols=166 Identities=20% Similarity=0.277 Sum_probs=109.7
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh--------hhccCCC-C
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKS-A 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--------~~~~p~~-~ 85 (406)
....-.+++|++++++|+||||||||+++|+|. .++.+|+|.+.|.++..+. ..|.|+. .
T Consensus 20 ~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl-----------~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~ 88 (237)
T COG0410 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL-----------VRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRR 88 (237)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeeEEECCeecCCCCHHHHHhCCeEeCccccc
Confidence 344456889999999999999999999999999 7888999999999876543 2588876 6
Q ss_pred cCceeEEEeeccccccccCC----CCCcchh------hhhHHh---------hhchhhhhccc-CCCceEeecCCCCCCc
Q 015465 86 VPAFLEIHDIAGLVRGAHEG----QGLGNSF------LSHIRA---------VDGIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~----~~l~~~~------l~~l~~---------ad~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
++..+++-|+.-+....... ....... +...+. -.-.+.+.+|. .+|+++.+| ||+.
T Consensus 89 iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLD---EPs~ 165 (237)
T COG0410 89 IFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLD---EPSE 165 (237)
T ss_pred chhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEec---CCcc
Confidence 77778877765543222111 0000000 000000 01124566776 799999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc-c-----cchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSN-D-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~-~-----h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+.-- +...+.+.+....++ + .+.....++.|+. .+|+.|+++..|+
T Consensus 166 GLaP~iv----------~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~-yvle~Griv~~G~ 220 (237)
T COG0410 166 GLAPKIV----------EEIFEAIKELRKEGGMTILLVEQNARFALEIADRG-YVLENGRIVLSGT 220 (237)
T ss_pred CcCHHHH----------HHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEE-EEEeCCEEEEecC
Confidence 9988752 222233333222211 1 5566677788888 8889999988765
No 53
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=2.2e-14 Score=133.11 Aligned_cols=168 Identities=14% Similarity=0.183 Sum_probs=98.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.||. .....
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~ 86 (213)
T cd03259 18 DLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL-----------ERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPH 86 (213)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccC
Confidence 34556889999999999999999999999999 6799999999987653211 2355554 22222
Q ss_pred eEEEeeccccccccC---C--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAHE---G--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~~---~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
.++.|...+...... . ......+++.+...+ -.+.++++. .+|+++++| ||++++|.
T Consensus 87 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllD---EPt~~LD~ 163 (213)
T cd03259 87 LTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD---EPLSALDA 163 (213)
T ss_pred CcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCH
Confidence 344443322110000 0 000001111110000 014455665 789999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccc
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~ 202 (406)
.........+..+ .++-...+.. .+|+...+..+|+++ ..|++|++..
T Consensus 164 ~~~~~l~~~l~~~---~~~~~~tii~-~sH~~~~~~~~~d~v-~~l~~G~i~~ 211 (213)
T cd03259 164 KLREELREELKEL---QRELGITTIY-VTHDQEEALALADRI-AVMNEGRIVQ 211 (213)
T ss_pred HHHHHHHHHHHHH---HHHcCCEEEE-EecCHHHHHHhcCEE-EEEECCEEEe
Confidence 8864333222111 0000111111 139999999999998 7788887653
No 54
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.45 E-value=3.1e-14 Score=132.33 Aligned_cols=164 Identities=12% Similarity=0.146 Sum_probs=96.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----------hhhccCCC-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLFKPKS- 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----------~~~~~p~~- 84 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.+|.
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 89 (216)
T TIGR00960 21 NLNFHITKGEMVFLVGHSGAGKSTFLKLILGI-----------EKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDH 89 (216)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEehhhcChhHHHHHHHhceEEecCc
Confidence 44456889999999999999999999999999 679999999999765321 12355554
Q ss_pred CcCceeEEEeecccccc---ccC--CCCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCC
Q 015465 85 AVPAFLEIHDIAGLVRG---AHE--GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~---~~~--~~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
.....+++.|...+... ... .......+++.+...+ -.+.+++++ .+|+++++| ||+
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EPt 166 (216)
T TIGR00960 90 RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLAD---EPT 166 (216)
T ss_pred cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCC
Confidence 22222344443322100 000 0000000111110000 014456666 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~ 199 (406)
+.+|....+.....+.. +..-...+ .-.+|+...+..+|+++ ..|.+|+
T Consensus 167 ~~LD~~~~~~l~~~l~~----~~~~~~ti-i~vsH~~~~~~~~~d~i-~~l~~G~ 215 (216)
T TIGR00960 167 GNLDPELSRDIMRLFEE----FNRRGTTV-LVATHDINLVETYRHRT-LTLSRGR 215 (216)
T ss_pred CcCCHHHHHHHHHHHHH----HHHCCCEE-EEEeCCHHHHHHhCCEE-EEEeCCc
Confidence 99999886443332211 10001111 11139999888899988 6677665
No 55
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=6.5e-14 Score=133.22 Aligned_cols=171 Identities=19% Similarity=0.248 Sum_probs=109.2
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCc---chhhhh-----hhccCCC-C
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE---RFEWLC-----QLFKPKS-A 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~---~~~~l~-----~~~~p~~-~ 85 (406)
....-.++.|+.++++||+|||||||+++|+|+ ..|+.|.|.++|+ +...+. .+|.-|. .
T Consensus 19 ~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL-----------e~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA 87 (345)
T COG1118 19 DDISLDIKSGELVALLGPSGAGKSTLLRIIAGL-----------ETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA 87 (345)
T ss_pred ccceeeecCCcEEEEECCCCCcHHHHHHHHhCc-----------CCCCCceEEECCEeccchhccchhhcceeEEEechh
Confidence 356667889999999999999999999999999 7899999999998 433322 1333343 3
Q ss_pred cCceeEEEeeccccccccCC----CCCcchhhhhHHhhhc-----------------hhhhhccc-CCCceEeecCCCCC
Q 015465 86 VPAFLEIHDIAGLVRGAHEG----QGLGNSFLSHIRAVDG-----------------IFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~----~~l~~~~l~~l~~ad~-----------------ll~vvda~-~~~~il~ld~~~dP 143 (406)
.+..+++.|...++-...+. .....+..+.++.+.+ -+.+.||. -.|+++.|| ||
T Consensus 88 LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLD---EP 164 (345)
T COG1118 88 LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLD---EP 164 (345)
T ss_pred hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeec---CC
Confidence 45567788877765322210 0111111111111110 14466666 689999999 99
Q ss_pred CchHHHHHH-HHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISA-ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~-el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+..+|.--. ++..| +.+..++..-.. .-.+|+.++..++++++ -.|++|++...++
T Consensus 165 f~ALDa~vr~~lr~w----Lr~~~~~~~~tt-vfVTHD~eea~~ladrv-vvl~~G~Ieqvg~ 221 (345)
T COG1118 165 FGALDAKVRKELRRW----LRKLHDRLGVTT-VFVTHDQEEALELADRV-VVLNQGRIEQVGP 221 (345)
T ss_pred chhhhHHHHHHHHHH----HHHHHHhhCceE-EEEeCCHHHHHhhcceE-EEecCCeeeeeCC
Confidence 999987542 33322 222222211100 01249999999999999 8999999876654
No 56
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.45 E-value=3.2e-14 Score=131.20 Aligned_cols=165 Identities=15% Similarity=0.145 Sum_probs=95.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----hhhccCCCC--cCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKSA--VPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~~~~~p~~~--~~~~ 89 (406)
+....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++... ...|.+|.. ....
T Consensus 18 ~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 86 (205)
T cd03226 18 DLSLDLYAGEIIALTGKNGAGKTTLAKILAGL-----------IKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFT 86 (205)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhh
Confidence 33456889999999999999999999999999 679999999998765321 123455542 1112
Q ss_pred eEEEeeccccccccCCC-CCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHHHHHH
Q 015465 90 LEIHDIAGLVRGAHEGQ-GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAE 153 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~-~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~e 153 (406)
.++.|...+........ .....+++.+...+ -.+.+++++ .+|+++++| ||++.+|....+
T Consensus 87 ~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~ 163 (205)
T cd03226 87 DSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFD---EPTSGLDYKNME 163 (205)
T ss_pred ccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEe---CCCccCCHHHHH
Confidence 33333332211000000 00001111111000 014455555 699999999 999999998864
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCc
Q 015465 154 LRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (406)
Q Consensus 154 l~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~ 200 (406)
.....+..+. .. ...+ .-.+|+...+..+|+++ ..|.+|++
T Consensus 164 ~l~~~l~~~~---~~-~~ti-i~~sH~~~~~~~~~d~i-~~l~~G~i 204 (205)
T cd03226 164 RVGELIRELA---AQ-GKAV-IVITHDYEFLAKVCDRV-LLLANGAI 204 (205)
T ss_pred HHHHHHHHHH---HC-CCEE-EEEeCCHHHHHHhCCEE-EEEECCEE
Confidence 4433221110 00 1111 11139999988999988 77777754
No 57
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.44 E-value=5e-14 Score=130.20 Aligned_cols=167 Identities=14% Similarity=0.157 Sum_probs=99.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----hhhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~~~~~p~~-~~~~~ 89 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.|+. ..+..
T Consensus 18 ~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (208)
T cd03268 18 DISLHVKKGEIYGFLGPNGAGKTTTMKIILGL-----------IKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPN 86 (208)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCCcccchHHHHhhEEEecCCCccCcc
Confidence 34456789999999999999999999999999 679999999998765321 12355554 23334
Q ss_pred eEEEeeccccccccC-CCCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCchHHHHHHH
Q 015465 90 LEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAE 153 (406)
Q Consensus 90 i~lvD~~gl~~~~~~-~~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~e 153 (406)
.++.|...+...... .......+++.+... .-.+.+++++ .+|+++++| ||++++|....+
T Consensus 87 ~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~ 163 (208)
T cd03268 87 LTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD---EPTNGLDPDGIK 163 (208)
T ss_pred CcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCcccCCHHHHH
Confidence 455554332211000 000000111111000 0114456666 789999999 999999998864
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccc
Q 015465 154 LRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (406)
Q Consensus 154 l~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~ 202 (406)
.....+.. +.+....+ .-.+|+...+..+|+++ ..|++|+++.
T Consensus 164 ~l~~~l~~----~~~~~~ti-i~~tH~~~~~~~~~d~v-~~l~~g~i~~ 206 (208)
T cd03268 164 ELRELILS----LRDQGITV-LISSHLLSEIQKVADRI-GIINKGKLIE 206 (208)
T ss_pred HHHHHHHH----HHHCCCEE-EEEcCCHHHHHHhcCEE-EEEECCEEEe
Confidence 43322211 11000111 11239999999999998 7788887643
No 58
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=8.1e-14 Score=125.84 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=88.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh---------hhccCCCC-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---------QLFKPKSA- 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~---------~~~~p~~~- 85 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.++..
T Consensus 18 ~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (178)
T cd03229 18 DVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL-----------EEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFA 86 (178)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccchhHHHHhhcEEEEecCCc
Confidence 34566889999999999999999999999999 6789999999987543221 11222221
Q ss_pred cCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHH
Q 015465 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERR 165 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~ 165 (406)
.....++.|...+. .+.|++ +++..+.+++ .+|+++++| ||+.++|....+....-+..+.
T Consensus 87 ~~~~~t~~~~l~~~------lS~G~~--qr~~la~al~------~~p~llilD---EP~~~LD~~~~~~l~~~l~~~~-- 147 (178)
T cd03229 87 LFPHLTVLENIALG------LSGGQQ--QRVALARALA------MDPDVLLLD---EPTSALDPITRREVRALLKSLQ-- 147 (178)
T ss_pred cCCCCCHHHheeec------CCHHHH--HHHHHHHHHH------CCCCEEEEe---CCcccCCHHHHHHHHHHHHHHH--
Confidence 11111111111110 111222 3333344443 499999999 9999999998644433221111
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHhhCC
Q 015465 166 IEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (406)
Q Consensus 166 l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g 198 (406)
......+ .-.+|+...+..+|+++ ..|++|
T Consensus 148 -~~~~~ti-ii~sH~~~~~~~~~d~i-~~l~~g 177 (178)
T cd03229 148 -AQLGITV-VLVTHDLDEAARLADRV-VVLRDG 177 (178)
T ss_pred -HhcCCEE-EEEeCCHHHHHHhcCEE-EEEeCC
Confidence 0000111 11138888888888887 555554
No 59
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.44 E-value=8e-14 Score=129.96 Aligned_cols=169 Identities=17% Similarity=0.219 Sum_probs=101.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------hhhccCCCC-c
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKSA-V 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~p~~~-~ 86 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.||.. .
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (222)
T cd03224 18 GVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL-----------LPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRI 86 (222)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcCCCCHHHHHhcCeEEecccccc
Confidence 34456889999999999999999999999999 679999999998654221 123555542 2
Q ss_pred CceeEEEeeccccccccCC---CCCcchhhhhHH-hh---h-----------chhhhhccc-CCCceEeecCCCCCCchH
Q 015465 87 PAFLEIHDIAGLVRGAHEG---QGLGNSFLSHIR-AV---D-----------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~~---~~l~~~~l~~l~-~a---d-----------~ll~vvda~-~~~~il~ld~~~dP~~~l 147 (406)
...+++.|...+....... ......+++.+. .. + -.+.+++++ .+|+++++| ||++++
T Consensus 87 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~L 163 (222)
T cd03224 87 FPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD---EPSEGL 163 (222)
T ss_pred CCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCcccC
Confidence 2233444433221110000 000001111110 00 0 114456666 789999999 999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
|....+....-+.. +..-...+ .-.+|+...+..+|+++ ..|++|++...+
T Consensus 164 D~~~~~~l~~~l~~----~~~~~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~~~~ 214 (222)
T cd03224 164 APKIVEEIFEAIRE----LRDEGVTI-LLVEQNARFALEIADRA-YVLERGRVVLEG 214 (222)
T ss_pred CHHHHHHHHHHHHH----HHHCCCEE-EEEeCCHHHHHHhccEE-EEeeCCeEEEeC
Confidence 99886443332211 11000111 11139999999999999 788889877554
No 60
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.44 E-value=2e-14 Score=142.67 Aligned_cols=172 Identities=15% Similarity=0.233 Sum_probs=106.9
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh----------hhccCCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLFKPKS 84 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~----------~~~~p~~ 84 (406)
.+....+.+|+++||+|+||||||||+++|+|. .+|++|.|.++|.++..+. ..|.+|.
T Consensus 22 ~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl-----------~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~ 90 (343)
T TIGR02314 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-----------ERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQH 90 (343)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECC
Confidence 344556889999999999999999999999999 7899999999998764321 1345554
Q ss_pred -CcCceeEEEeeccccccccC--CCCC---cchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCC
Q 015465 85 -AVPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~~~~~~--~~~l---~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP 143 (406)
......++.|...+...... .... ...+++.+...+. -+.+++|+ .+|+++++| ||
T Consensus 91 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlD---EP 167 (343)
T TIGR02314 91 FNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD---EA 167 (343)
T ss_pred ccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CC
Confidence 23333444444432211000 0000 0011111111110 14566666 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|+...+.++..+..+.+ +....+ .-.+|+++.+.++||++ .+|++|+++..++
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~---~~g~ti-iliTH~~~~v~~~~d~v-~vl~~G~iv~~g~ 224 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINR---RLGLTI-LLITHEMDVVKRICDCV-AVISNGELIEQGT 224 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999999987544443222211 111111 11249999999999999 8999999886654
No 61
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=4.2e-14 Score=131.86 Aligned_cols=171 Identities=17% Similarity=0.267 Sum_probs=100.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh----h--hhhccCCCC-cCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----L--CQLFKPKSA-VPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~----l--~~~~~p~~~-~~~ 88 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. . ...|.||.. ...
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 86 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL-----------LKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDD 86 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEecCcChHHHhhcEEEecCCccccc
Confidence 44566789999999999999999999999999 67999999998865421 1 123555542 222
Q ss_pred eeEEEeeccccc---cccCC--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHH
Q 015465 89 FLEIHDIAGLVR---GAHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (406)
Q Consensus 89 ~i~lvD~~gl~~---~~~~~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld 148 (406)
.+++.|...+.. +.... ......+++.+...+ -.+.+++++ .+|+++++| ||++.+|
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD---EPt~~LD 163 (220)
T cd03265 87 ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD---EPTIGLD 163 (220)
T ss_pred cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccCCC
Confidence 233333332210 00000 000001111111000 014455565 799999999 9999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
....+.....+..+.+ .....+ .-.+|+...+..+|+++ .+|++|++...++
T Consensus 164 ~~~~~~l~~~l~~~~~---~~~~tv-i~~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 215 (220)
T cd03265 164 PQTRAHVWEYIEKLKE---EFGMTI-LLTTHYMEEAEQLCDRV-AIIDHGRIIAEGT 215 (220)
T ss_pred HHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEeCCEEEEeCC
Confidence 9886444333221110 001111 11139999999999999 8889998875543
No 62
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=3.6e-14 Score=132.35 Aligned_cols=171 Identities=19% Similarity=0.223 Sum_probs=99.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh--hhccCCCC-cCceeEE
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-VPAFLEI 92 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~p~~~-~~~~i~l 92 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.||.. .+...++
T Consensus 22 ~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv 90 (220)
T cd03293 22 DISLSVEEGEFVALVGPSGCGKSTLLRIIAGL-----------ERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTV 90 (220)
T ss_pred ceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECccccCcEEEEecccccccCCCH
Confidence 44556889999999999999999999999999 6789999999887653221 13444431 2222333
Q ss_pred EeeccccccccC---C--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHHHHH
Q 015465 93 HDIAGLVRGAHE---G--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (406)
Q Consensus 93 vD~~gl~~~~~~---~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~ 152 (406)
.|...+...... . ......+++.+...+ -.+.+++++ .+|+++++| ||++++|....
T Consensus 91 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD---EPt~~LD~~~~ 167 (220)
T cd03293 91 LDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD---EPFSALDALTR 167 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC---CCCCCCCHHHH
Confidence 332221110000 0 000001111110000 114455665 689999999 99999999986
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhh--CCCccccCC
Q 015465 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ--DGKDVRLGD 205 (406)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~--~g~~~~~~~ 205 (406)
+.....+..+ ...-...+.. .+|+...+..+|+++ ..|. +|+++..++
T Consensus 168 ~~~~~~l~~~---~~~~~~tiii-~sH~~~~~~~~~d~i-~~l~~~~G~i~~~~~ 217 (220)
T cd03293 168 EQLQEELLDI---WRETGKTVLL-VTHDIDEAVFLADRV-VVLSARPGRIVAEVE 217 (220)
T ss_pred HHHHHHHHHH---HHHcCCEEEE-EecCHHHHHHhCCEE-EEEECCCCEEEEEEE
Confidence 4443322111 0000111111 139999899999998 7777 688765443
No 63
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.43 E-value=8.3e-13 Score=117.39 Aligned_cols=84 Identities=54% Similarity=0.911 Sum_probs=69.1
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcC-CcchhhhhhhccCCCCcCceeEEEeeccccccccCCCC
Q 015465 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQG 107 (406)
Q Consensus 29 liG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~-g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~~~ 107 (406)
|+|++|||||||+|+|+|....++++|++|..|+.|.+.+. +. .+.++|+||+.........
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------~~~i~DtpG~~~~~~~~~~ 63 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGA-----------------RIQVADIPGLIEGASEGRG 63 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCC-----------------eEEEEeccccchhhhcCCC
Confidence 58999999999999999987767899999999999998877 54 3799999998755444444
Q ss_pred CcchhhhhHHhhhchhhhhccc
Q 015465 108 LGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 108 l~~~~l~~l~~ad~ll~vvda~ 129 (406)
+...+...++.+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~ 85 (176)
T cd01881 64 LGNQFLAHIRRADAILHVVDAS 85 (176)
T ss_pred ccHHHHHHHhccCEEEEEEecc
Confidence 5556667788899999998885
No 64
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.42 E-value=4.9e-14 Score=138.05 Aligned_cols=171 Identities=15% Similarity=0.177 Sum_probs=112.2
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-----hccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----~~~p~~-~~~~~ 89 (406)
...-.+..|+.++|+||+|||||||||+|+|+ .+|++|.|.++|.++..+.. .+..|. ..+..
T Consensus 21 ~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL-----------e~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPh 89 (338)
T COG3839 21 DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL-----------EEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPH 89 (338)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhHCCEEEEeCCccccCC
Confidence 34456889999999999999999999999999 78999999999998876542 344454 56777
Q ss_pred eEEEeeccccccccCC--CCCcch---hhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAHEG--QGLGNS---FLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~--~~l~~~---~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|+.++.-...+. .....+ ..+.++..+. -+.+.||. .+|+++.+| ||++.+|.
T Consensus 90 mtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D---EPlSnLDa 166 (338)
T COG3839 90 MTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD---EPLSNLDA 166 (338)
T ss_pred CcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec---CchhHhhH
Confidence 8888877765332210 000000 0000000000 13455555 699999999 99999988
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
--+......+..+.+ ++.... .-.+|+..+...+.|+| .+|++|++...|+
T Consensus 167 ~lR~~mr~ei~~lh~---~l~~T~-IYVTHDq~EAmtladri-~Vm~~G~i~Q~g~ 217 (338)
T COG3839 167 KLRVLMRSEIKKLHE---RLGTTT-IYVTHDQVEAMTLADRI-VVMNDGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHHHHHHH---hcCCcE-EEEcCCHHHHHhhCCEE-EEEeCCeeeecCC
Confidence 765444443322222 111111 11249999999999999 8889998876554
No 65
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=6.4e-14 Score=132.25 Aligned_cols=171 Identities=20% Similarity=0.233 Sum_probs=101.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------h--hhccCCC-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS- 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~p~~- 84 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 87 (241)
T cd03256 19 DVSLSINPGEFVALIGPSGAGKSTLLRCLNGL-----------VEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQF 87 (241)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCCceEEECCEeccccCHhHHHHHHhccEEEcccC
Confidence 34456889999999999999999999999999 678999999998765321 1 2355655
Q ss_pred CcCceeEEEeeccccccc--------cC--CCC---CcchhhhhHHhhh--------------chhhhhccc-CCCceEe
Q 015465 85 AVPAFLEIHDIAGLVRGA--------HE--GQG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIH 136 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~~--------~~--~~~---l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ 136 (406)
..+..+++.|...+.... .. ... ....++..+...+ -.+.++++. .+|++++
T Consensus 88 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 167 (241)
T cd03256 88 NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLIL 167 (241)
T ss_pred cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 223333444433221000 00 000 0000111110000 013455555 7899999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+| ||++++|....+.....+..+. ......+ .-.+|+...+..+|+++ .+|.+|+++..++
T Consensus 168 lD---EPt~~LD~~~~~~l~~~l~~~~---~~~~~ti-i~~tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 228 (241)
T cd03256 168 AD---EPVASLDPASSRQVMDLLKRIN---REEGITV-IVSLHQVDLAREYADRI-VGLKDGRIVFDGP 228 (241)
T ss_pred Ee---CccccCCHHHHHHHHHHHHHHH---HhcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEeecC
Confidence 99 9999999988644433221111 0001111 11239999999999999 8889998876553
No 66
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.42 E-value=4.7e-14 Score=132.85 Aligned_cols=169 Identities=19% Similarity=0.254 Sum_probs=100.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------hhhccCCC-Cc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKS-AV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~p~~-~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.||. ..
T Consensus 18 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 86 (236)
T cd03219 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF-----------LRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRL 86 (236)
T ss_pred CceEEecCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCceEEECCEECCCCCHHHHHhcCEEEEeccccc
Confidence 34456889999999999999999999999999 678999999988754321 12355554 22
Q ss_pred CceeEEEeeccccccccCCC---------------CCcchhhhhHHhhh--------------chhhhhccc-CCCceEe
Q 015465 87 PAFLEIHDIAGLVRGAHEGQ---------------GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIH 136 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~~~---------------~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ 136 (406)
+..+++.|...+........ .....+++.+...+ -.+.+++++ .+|++++
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 166 (236)
T cd03219 87 FPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLL 166 (236)
T ss_pred ccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 22334444322211000000 00000111110000 014455665 7899999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
+| ||++++|....+.....+..+ ......+ .-.+|+...+..+|+++ ..|++|++...+
T Consensus 167 lD---EPt~~LD~~~~~~l~~~l~~~----~~~~~ti-i~vsH~~~~~~~~~d~i-~~l~~G~i~~~~ 225 (236)
T cd03219 167 LD---EPAAGLNPEETEELAELIREL----RERGITV-LLVEHDMDVVMSLADRV-TVLDQGRVIAEG 225 (236)
T ss_pred Ec---CCcccCCHHHHHHHHHHHHHH----HHCCCEE-EEEecCHHHHHHhCCEE-EEEeCCEEEeec
Confidence 99 999999998864433322111 1001111 11239999999999999 888999887554
No 67
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.42 E-value=5.8e-14 Score=132.03 Aligned_cols=168 Identities=15% Similarity=0.256 Sum_probs=99.5
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh--hhccCCC-CcCceeEEEe
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKS-AVPAFLEIHD 94 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~p~~-~~~~~i~lvD 94 (406)
.-.+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. .....+++.|
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e 73 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGL-----------AQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRE 73 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHH
Confidence 345789999999999999999999999999 6799999999987653221 2455554 2222234444
Q ss_pred eccccc-----cccCC--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHHHHH
Q 015465 95 IAGLVR-----GAHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (406)
Q Consensus 95 ~~gl~~-----~~~~~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~ 152 (406)
...+.. ..... ......+++.+...+ -.+.+++++ .+|+++++| ||++++|....
T Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~gLD~~~~ 150 (230)
T TIGR01184 74 NIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLD---EPFGALDALTR 150 (230)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCCcCCCHHHH
Confidence 332210 00000 000001111111000 014455655 799999999 99999999986
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
......+..+. .+....+ .-.+|+...+..+|+++ ..|.+|+++..+
T Consensus 151 ~~l~~~l~~~~---~~~~~ti-i~~sH~~~~~~~~~d~v-~~l~~G~i~~~~ 197 (230)
T TIGR01184 151 GNLQEELMQIW---EEHRVTV-LMVTHDVDEALLLSDRV-VMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHH---HhcCCEE-EEEeCCHHHHHHhcCEE-EEEeCCcEeccc
Confidence 44333221110 0000111 11139999999999999 888888877554
No 68
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.42 E-value=9.5e-14 Score=131.34 Aligned_cols=172 Identities=19% Similarity=0.226 Sum_probs=102.9
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------h--hhccCCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~p~~ 84 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~ 87 (243)
T TIGR02315 19 KNINLNINPGEFVAIIGPSGAGKSTLLRCINRL-----------VEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQH 87 (243)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCC
Confidence 344566889999999999999999999999999 678999999998765321 1 2455655
Q ss_pred -CcCceeEEEeecccccccc-----------CC--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceE
Q 015465 85 -AVPAFLEIHDIAGLVRGAH-----------EG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDII 135 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~~~~~-----------~~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il 135 (406)
.....+++.|...+..... .. ......+++.+.... -.+.+++++ .+|+++
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 167 (243)
T TIGR02315 88 YNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLI 167 (243)
T ss_pred CcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 2233344444332211000 00 000000111110000 014455665 799999
Q ss_pred eecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 136 ~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++| ||++++|....+.....+..+ ...-...+ .-.+|+...+.++|+++ ..|++|+++..++
T Consensus 168 llD---EPt~~LD~~~~~~l~~~l~~~---~~~~~~ti-ii~tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 229 (243)
T TIGR02315 168 LAD---EPIASLDPKTSKQVMDYLKRI---NKEDGITV-IINLHQVDLAKKYADRI-VGLKAGEIVFDGA 229 (243)
T ss_pred EEe---CCcccCCHHHHHHHHHHHHHH---HHHcCCEE-EEEeCCHHHHHHhcCeE-EEEECCEEEecCC
Confidence 999 999999998864443322111 11001111 11239999999999999 8889998876554
No 69
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=1.2e-13 Score=127.82 Aligned_cols=162 Identities=19% Similarity=0.329 Sum_probs=97.3
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh---hhhccCCC-CcCceeEE
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---CQLFKPKS-AVPAFLEI 92 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---~~~~~p~~-~~~~~i~l 92 (406)
....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.+|. ..+..+++
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv 87 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGI-----------ILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKV 87 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcH
Confidence 3456789999999999999999999999999 679999999999765321 12355554 22333344
Q ss_pred Eeecccccccc---CC--CCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCchHHHHHH
Q 015465 93 HDIAGLVRGAH---EG--QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (406)
Q Consensus 93 vD~~gl~~~~~---~~--~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~ 152 (406)
.|...+..... .. ......+++.+... .-.+.+++++ .+|+++++| ||++++|....
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD---EP~~~LD~~~~ 164 (210)
T cd03269 88 IDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD---EPFSGLDPVNV 164 (210)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHH
Confidence 44332211000 00 00000111111000 0013455655 789999999 99999999886
Q ss_pred HHhhhhHHHHHHHHHHHHH---HhhhccccchHHHHHHHHHHHHHhhCCCcc
Q 015465 153 ELRLKDIEFMERRIEDVEK---SMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (406)
Q Consensus 153 el~~~di~~l~k~l~~~~~---~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~ 201 (406)
+..... +..+.+ .+ .-.+|+...+..+|+++ ..|.+|++.
T Consensus 165 ~~~~~~-------l~~~~~~~~ti-i~~sH~~~~~~~~~d~i-~~l~~g~i~ 207 (210)
T cd03269 165 ELLKDV-------IRELARAGKTV-ILSTHQMELVEELCDRV-LLLNKGRAV 207 (210)
T ss_pred HHHHHH-------HHHHHHCCCEE-EEECCCHHHHHHhhhEE-EEEeCCEEE
Confidence 443332 222211 11 11139999888999998 777878764
No 70
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.42 E-value=6.6e-14 Score=129.87 Aligned_cols=163 Identities=18% Similarity=0.198 Sum_probs=95.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----------hhhccCCC-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLFKPKS- 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----------~~~~~p~~- 84 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++..+ ...|.+|.
T Consensus 20 ~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 88 (214)
T TIGR02673 20 DVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA-----------LTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDF 88 (214)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcccCCHHHHHHHHhheEEEecCh
Confidence 34457889999999999999999999999999 678999999988765321 12355554
Q ss_pred CcCceeEEEeecccccccc---CC--CCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCC
Q 015465 85 AVPAFLEIHDIAGLVRGAH---EG--QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~~~---~~--~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
......++.|...+..... .. ......+++.+... .-.+.+++++ .+|+++++| ||+
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLD---EPt 165 (214)
T TIGR02673 89 RLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLAD---EPT 165 (214)
T ss_pred hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe---CCc
Confidence 2222344444332211000 00 00000111111000 0114455555 789999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g 198 (406)
+++|..........+..+ .+-...+ .-.+|+...+..+||++ .+|++|
T Consensus 166 ~~LD~~~~~~l~~~l~~~----~~~~~ti-i~~tH~~~~~~~~~d~i-~~l~~G 213 (214)
T TIGR02673 166 GNLDPDLSERILDLLKRL----NKRGTTV-IVATHDLSLVDRVAHRV-IILDDG 213 (214)
T ss_pred ccCCHHHHHHHHHHHHHH----HHcCCEE-EEEeCCHHHHHHhcCEE-EEecCC
Confidence 999999865443332211 0001111 11239999999999988 556655
No 71
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=2e-14 Score=143.65 Aligned_cols=171 Identities=15% Similarity=0.110 Sum_probs=108.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
+....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++..+. ..|.+|. ..+..
T Consensus 22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~ 90 (356)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL-----------ERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPH 90 (356)
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCC
Confidence 34566889999999999999999999999999 6799999999998654322 2355555 33334
Q ss_pred eEEEeeccccccccC--CCC---CcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAHE--GQG---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~~--~~~---l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+...... ... .....++.++..+. -+.+++|. .+|+++++| ||++.+|.
T Consensus 91 ~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD---EP~s~LD~ 167 (356)
T PRK11650 91 MSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD---EPLSNLDA 167 (356)
T ss_pred CCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCH
Confidence 555555543311100 000 00011111111110 14566666 799999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
...+.....+..+.+ .....+ .-.+|+..++..+||++ .+|++|++...|+
T Consensus 168 ~~r~~l~~~l~~l~~---~~g~ti-i~vTHd~~ea~~l~D~i-~vl~~G~i~~~g~ 218 (356)
T PRK11650 168 KLRVQMRLEIQRLHR---RLKTTS-LYVTHDQVEAMTLADRV-VVMNGGVAEQIGT 218 (356)
T ss_pred HHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEeCCEEEEECC
Confidence 986544443322111 111111 11249999999999999 8899999886664
No 72
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=9.9e-14 Score=130.83 Aligned_cols=170 Identities=15% Similarity=0.154 Sum_probs=101.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------h--hhccCCC-Cc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKS-AV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~p~~-~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.++. ..
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 91 (237)
T PRK11614 23 EVSLHINQGEIVTLIGANGAGKTTLLGTLCGD-----------PRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRV 91 (237)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCceEEECCEecCCCCHHHHHHhCEEEeccCccc
Confidence 44566889999999999999999999999999 679999999998764321 1 2355554 22
Q ss_pred CceeEEEeeccccccccCCCCC---cchhhhhHH-hhh--------------chhhhhccc-CCCceEeecCCCCCCchH
Q 015465 87 PAFLEIHDIAGLVRGAHEGQGL---GNSFLSHIR-AVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~~~~l---~~~~l~~l~-~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~l 147 (406)
...+++.|...+.......... ...+++.+. ..+ -.+.+++++ .+|+++++| ||++++
T Consensus 92 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlD---EPt~~L 168 (237)
T PRK11614 92 FSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD---EPSLGL 168 (237)
T ss_pred CCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEc---CccccC
Confidence 2223443433221100000000 001111110 000 014455665 799999999 999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|....+.....+..+ ..-...+.. .+|+...+.++|+++ .+|++|+++..++
T Consensus 169 D~~~~~~l~~~l~~~----~~~~~tiii-~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 220 (237)
T PRK11614 169 APIIIQQIFDTIEQL----REQGMTIFL-VEQNANQALKLADRG-YVLENGHVVLEDT 220 (237)
T ss_pred CHHHHHHHHHHHHHH----HHCCCEEEE-EeCcHHHHHhhCCEE-EEEeCCEEEeeCC
Confidence 998764433322111 000111111 139999999999999 8889998876654
No 73
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.41 E-value=7.6e-14 Score=131.07 Aligned_cols=170 Identities=16% Similarity=0.245 Sum_probs=101.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------hhhccCCC-Cc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKS-AV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~p~~-~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.++. ..
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (232)
T cd03218 18 GVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL-----------VKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASI 86 (232)
T ss_pred cceeEecCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEecccCCHhHHHhccEEEecCCccc
Confidence 34456889999999999999999999999999 679999999988754221 12355554 22
Q ss_pred CceeEEEeeccccccccCC--CC---CcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCch
Q 015465 87 PAFLEIHDIAGLVRGAHEG--QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~~--~~---l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ 146 (406)
+..+++.|...+....... .. ....++..+...+ -.+.+++++ .+|+++++| ||++.
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~ 163 (232)
T cd03218 87 FRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD---EPFAG 163 (232)
T ss_pred cccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCccc
Confidence 3233444433221100000 00 0001111111000 014455665 799999999 99999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+|....+.....+..+ ..-...+ .-.+|+...+..+|+++ .+|++|++...++
T Consensus 164 LD~~~~~~~~~~l~~~----~~~~~ti-i~~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 216 (232)
T cd03218 164 VDPIAVQDIQKIIKIL----KDRGIGV-LITDHNVRETLSITDRA-YIIYEGKVLAEGT 216 (232)
T ss_pred CCHHHHHHHHHHHHHH----HHCCCEE-EEEeCCHHHHHHhCCEE-EEEECCeEEEEeC
Confidence 9999864443322111 1001111 11139999999999999 8889998875543
No 74
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.41 E-value=2.9e-13 Score=120.62 Aligned_cols=144 Identities=18% Similarity=0.260 Sum_probs=89.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEee
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~ 95 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.+.++|.++..... .......+-++
T Consensus 18 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~----~~~~~~~i~~~-- 80 (163)
T cd03216 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGL-----------YKPDSGEILVDGKEVSFASP----RDARRAGIAMV-- 80 (163)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEECCcCCH----HHHHhcCeEEE--
Confidence 33456889999999999999999999999999 67999999999875432110 00000001111
Q ss_pred ccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 015465 96 AGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR 175 (406)
Q Consensus 96 ~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~ 175 (406)
.. .+.|++ +++..+.+++. +|+++++| ||++.+|....+.....+..+. +. ...+ .
T Consensus 81 ----~q----LS~G~~--qrl~laral~~------~p~illlD---EP~~~LD~~~~~~l~~~l~~~~---~~-~~ti-i 136 (163)
T cd03216 81 ----YQ----LSVGER--QMVEIARALAR------NARLLILD---EPTAALTPAEVERLFKVIRRLR---AQ-GVAV-I 136 (163)
T ss_pred ----Ee----cCHHHH--HHHHHHHHHhc------CCCEEEEE---CCCcCCCHHHHHHHHHHHHHHH---HC-CCEE-E
Confidence 00 112222 44555555544 99999999 9999999988644333221110 00 0011 0
Q ss_pred ccccchHHHHHHHHHHHHHhhCCCcc
Q 015465 176 SNDKQLKIEHELCQRVKAWLQDGKDV 201 (406)
Q Consensus 176 ~~~h~~~~v~~l~~~i~~~L~~g~~~ 201 (406)
-.+|+...+..+|+++ ..+++|++.
T Consensus 137 i~sh~~~~~~~~~d~~-~~l~~g~i~ 161 (163)
T cd03216 137 FISHRLDEVFEIADRV-TVLRDGRVV 161 (163)
T ss_pred EEeCCHHHHHHhCCEE-EEEECCEEE
Confidence 1138888888999988 777777654
No 75
>PRK15494 era GTPase Era; Provisional
Probab=99.41 E-value=8e-13 Score=131.31 Aligned_cols=189 Identities=15% Similarity=0.138 Sum_probs=121.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.++++|++|+|||||+|.|+|....+ ++.|++|+....|.+..++. ++.++||||+......
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~-----------------qi~~~DTpG~~~~~~~ 116 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT-----------------QVILYDTPGIFEPKGS 116 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe-----------------EEEEEECCCcCCCccc
Confidence 99999999999999999999987754 78899999888888887754 4899999998643321
Q ss_pred -CCCCcchhhhhHHhhhchhhhhcccCCCc-e----E-eecCCCCCC----chHHHHHHHHhhhhHHHHHHHHHHHH---
Q 015465 105 -GQGLGNSFLSHIRAVDGIFHVLRAFEDPD-I----I-HVDDSVDPV----RDLEVISAELRLKDIEFMERRIEDVE--- 170 (406)
Q Consensus 105 -~~~l~~~~l~~l~~ad~ll~vvda~~~~~-i----l-~ld~~~dP~----~~ld~i~~el~~~di~~l~k~l~~~~--- 170 (406)
...+.......++.+|++++|+|+..... . + .+.....|. +.+|..+. .+..+.+.+....
T Consensus 117 l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-----~~~~~~~~l~~~~~~~ 191 (339)
T PRK15494 117 LEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-----YLNDIKAFLTENHPDS 191 (339)
T ss_pred HHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-----cHHHHHHHHHhcCCCc
Confidence 11122223345788999999998753211 0 0 000000111 11111110 0111111111110
Q ss_pred HHhhhccccchHHHHHHHHHHHHHhhCCCcccc-CCCChhH-----HHHHHHh-hhhccccEEeeeccchhhhh
Q 015465 171 KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDYQ 237 (406)
Q Consensus 171 ~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~-~~~t~~e-----~e~i~~~-~~~~~kpi~~~~N~~~~~~~ 237 (406)
.....+ +....+++++.+.+...++.|.++++ +.+|+.. .|+||+. +..+.++++|.+.+..+.+.
T Consensus 192 ~i~~iS-Aktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~ 264 (339)
T PRK15494 192 LLFPIS-ALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWE 264 (339)
T ss_pred EEEEEe-ccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEE
Confidence 011112 26677899999999999999999887 5667664 2788888 77889999999988776654
No 76
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.41 E-value=3.2e-13 Score=119.74 Aligned_cols=172 Identities=15% Similarity=0.172 Sum_probs=111.2
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh------hccCCCCcCcee
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------LFKPKSAVPAFL 90 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~------~~~p~~~~~~~i 90 (406)
..-.+..|++++|+||+|||||||+|.++|. ..|.+|.|.++|.+...... +.......++.+
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF-----------~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHL 86 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGF-----------ETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHL 86 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhc-----------cCCCCceEEEcCeecCcCCcccCChhhhhhccccchhh
Confidence 3445889999999999999999999999999 77999999999987654432 222234666778
Q ss_pred EEEeeccccccccCCCCC-----cchhhhhHHhhhch--------------hhhhccc-CCCceEeecCCCCCCchHHHH
Q 015465 91 EIHDIAGLVRGAHEGQGL-----GNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (406)
Q Consensus 91 ~lvD~~gl~~~~~~~~~l-----~~~~l~~l~~ad~l--------------l~vvda~-~~~~il~ld~~~dP~~~ld~i 150 (406)
++-...|++..+.....- ....+..+..++.. +.+.||+ .+..|+.+| ||++.+|+-
T Consensus 87 tV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLD---EPFsALdP~ 163 (231)
T COG3840 87 TVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLD---EPFSALDPA 163 (231)
T ss_pred hhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEec---CchhhcCHH
Confidence 888888876544321100 00011111111111 4566777 677789999 999999887
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
-+...+.-+..+ -..-+.++ .-.+|..++...+.+++ .++.+|++...++.+
T Consensus 164 LR~eMl~Lv~~l---~~E~~~Tl-lmVTH~~~Da~~ia~~~-~fl~~Gri~~~g~~~ 215 (231)
T COG3840 164 LRAEMLALVSQL---CDERKMTL-LMVTHHPEDAARIADRV-VFLDNGRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHHHH---HHhhCCEE-EEEeCCHHHHHHhhhce-EEEeCCEEEeeccHH
Confidence 543333222111 11101111 11249999999999999 899999998876543
No 77
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.41 E-value=6.1e-14 Score=130.47 Aligned_cols=163 Identities=18% Similarity=0.250 Sum_probs=98.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------hhhccCCC-CcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPKS-AVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~~~~~p~~-~~~~ 88 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.||. ..+.
T Consensus 23 ~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (218)
T cd03266 23 GVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL-----------LEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYD 91 (218)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCc
Confidence 33456789999999999999999999999999 779999999998765321 12355554 2333
Q ss_pred eeEEEeeccccccccC--C---CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHH
Q 015465 89 FLEIHDIAGLVRGAHE--G---QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~--~---~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld 148 (406)
.+++.|...+...... . ......+++.+...+ -.+.+++++ .+|+++++| ||++.+|
T Consensus 92 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD---EPt~~LD 168 (218)
T cd03266 92 RLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD---EPTTGLD 168 (218)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEc---CCCcCCC
Confidence 3444443322111000 0 000001111111100 114566666 799999999 9999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH---HhhhccccchHHHHHHHHHHHHHhhCCCcc
Q 015465 149 VISAELRLKDIEFMERRIEDVEK---SMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (406)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~---~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~ 201 (406)
....+..... +..+.+ .+ .-.+|+...+..+|+++ ..|++|++.
T Consensus 169 ~~~~~~l~~~-------l~~~~~~~~ti-i~~tH~~~~~~~~~d~i-~~l~~G~i~ 215 (218)
T cd03266 169 VMATRALREF-------IRQLRALGKCI-LFSTHIMQEVERLCDRV-VVLHRGRVV 215 (218)
T ss_pred HHHHHHHHHH-------HHHHHHCCCEE-EEEeCCHHHHHHhcCEE-EEEECCEEe
Confidence 9886443332 222211 11 11239998889999998 777888764
No 78
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.41 E-value=6.5e-14 Score=129.84 Aligned_cols=168 Identities=14% Similarity=0.160 Sum_probs=96.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. .....
T Consensus 18 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (213)
T cd03301 18 DLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL-----------EEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPH 86 (213)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCcccceEEEEecChhhccC
Confidence 34456889999999999999999999999999 6789999999887653211 2344443 12222
Q ss_pred eEEEeecccccccc---CC--CCCcchhhhhHHhh---h-----------chhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAH---EG--QGLGNSFLSHIRAV---D-----------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~---~~--~~l~~~~l~~l~~a---d-----------~ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
.++.|...+..... .. ......+++.+... + -.+.+++++ .+|+++++| ||++.+|.
T Consensus 87 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD---EPt~~LD~ 163 (213)
T cd03301 87 MTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD---EPLSNLDA 163 (213)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCH
Confidence 33333322210000 00 00000011111000 0 014455665 789999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccc
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~ 202 (406)
...+.....+..+ .......+ .-.+|+...+..+|+++ .+|.+|+++.
T Consensus 164 ~~~~~l~~~l~~~---~~~~~~tv-i~~sH~~~~~~~~~d~i-~~l~~g~~~~ 211 (213)
T cd03301 164 KLRVQMRAELKRL---QQRLGTTT-IYVTHDQVEAMTMADRI-AVMNDGQIQQ 211 (213)
T ss_pred HHHHHHHHHHHHH---HHHcCCEE-EEEeCCHHHHHHhcCeE-EEEECCEEEe
Confidence 8864433322111 00000111 11139999999999998 7778887654
No 79
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=6e-14 Score=139.66 Aligned_cols=172 Identities=17% Similarity=0.268 Sum_probs=104.2
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----------hhhccCCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLFKPKS 84 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----------~~~~~p~~ 84 (406)
.+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++..+ ...|.+|.
T Consensus 22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~ 90 (343)
T PRK11153 22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL-----------ERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQH 90 (343)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCC
Confidence 344566889999999999999999999999999 779999999998765321 12355554
Q ss_pred -CcCceeEEEeecccccc---ccCC--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCC
Q 015465 85 -AVPAFLEIHDIAGLVRG---AHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~~~---~~~~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.....+++.|...+... .... ......+++.+...+ -.+.+++++ .+|+++++| ||
T Consensus 91 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLD---EP 167 (343)
T PRK11153 91 FNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCD---EA 167 (343)
T ss_pred CccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CC
Confidence 23333444444332210 0000 000000111110000 014455555 699999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|..........+..+.+ .....+ .-.+|++..+..+|+++ .+|++|+++..++
T Consensus 168 ts~LD~~~~~~l~~~L~~l~~---~~g~ti-ilvtH~~~~i~~~~d~v-~~l~~G~i~~~g~ 224 (343)
T PRK11153 168 TSALDPATTRSILELLKDINR---ELGLTI-VLITHEMDVVKRICDRV-AVIDAGRLVEQGT 224 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999999986544333221111 001111 11239999999999999 8899999876654
No 80
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.41 E-value=1.4e-13 Score=130.16 Aligned_cols=170 Identities=15% Similarity=0.174 Sum_probs=102.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------h--hhhccCCC-C
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------L--CQLFKPKS-A 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l--~~~~~p~~-~ 85 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. . ...|.+|. .
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 87 (240)
T PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL-----------EEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFY 87 (240)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCChhHHHHhhceEEEecccc
Confidence 44566889999999999999999999999999 77999999999876532 1 12355554 2
Q ss_pred cCceeEEEeecccccc-cc---CC--CCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCC
Q 015465 86 VPAFLEIHDIAGLVRG-AH---EG--QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~-~~---~~--~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
....+++.|...+... .. .. ......+++.+... .-.+.+++++ .+|+++++| ||+
T Consensus 88 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP~ 164 (240)
T PRK09493 88 LFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD---EPT 164 (240)
T ss_pred cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEc---CCc
Confidence 2223344443322110 00 00 00000111111000 0114566666 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+++|....+.....+..+ .+-...+ .-.+|+...+..+|+++ .+|++|+++..++
T Consensus 165 ~~LD~~~~~~l~~~l~~~----~~~~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 219 (240)
T PRK09493 165 SALDPELRHEVLKVMQDL----AEEGMTM-VIVTHEIGFAEKVASRL-IFIDKGRIAEDGD 219 (240)
T ss_pred ccCCHHHHHHHHHHHHHH----HHcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEeeCC
Confidence 999998864433322111 1001111 11139999999999999 8889998876554
No 81
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.41 E-value=9.3e-14 Score=129.24 Aligned_cols=164 Identities=20% Similarity=0.235 Sum_probs=94.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----------hhhccCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPKS 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~p~~ 84 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.++.
T Consensus 22 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 90 (218)
T cd03255 22 GVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL-----------DRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQS 90 (218)
T ss_pred eeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC-----------cCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeec
Confidence 34456889999999999999999999999999 779999999998765321 12344544
Q ss_pred -CcCceeEEEeeccccccccC--C---CCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCC
Q 015465 85 -AVPAFLEIHDIAGLVRGAHE--G---QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~~~~~~--~---~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP 143 (406)
..+..+++.|...+...... . ......+++.+... .-.+.+++++ .+|+++++| ||
T Consensus 91 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD---EP 167 (218)
T cd03255 91 FNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILAD---EP 167 (218)
T ss_pred cccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEc---CC
Confidence 22222333333222110000 0 00000111111000 0014456666 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~ 199 (406)
++++|+...+.....+..+.+ .....+.. .+|+...+. +|+++ ..|++|+
T Consensus 168 ~~~LD~~~~~~l~~~l~~~~~---~~~~tii~-~sH~~~~~~-~~d~v-~~l~~G~ 217 (218)
T cd03255 168 TGNLDSETGKEVMELLRELNK---EAGTTIVV-VTHDPELAE-YADRI-IELRDGK 217 (218)
T ss_pred cccCCHHHHHHHHHHHHHHHH---hcCCeEEE-EECCHHHHh-hhcEE-EEeeCCc
Confidence 999999886444332221110 00111111 138888876 88888 6666664
No 82
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.41 E-value=1.2e-13 Score=124.87 Aligned_cols=151 Identities=22% Similarity=0.355 Sum_probs=92.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|+.|.|.++|.++.... ..|.++
T Consensus 17 ~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q----- 80 (180)
T cd03214 17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL-----------LKPSSGEILLDGKDLASLSPKELARKIAYVPQ----- 80 (180)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCcCCHHHHHHHHhHHHH-----
Confidence 34456889999999999999999999999999 7799999999887542211 122222
Q ss_pred eeEEEeeccccccc---cCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHH
Q 015465 89 FLEIHDIAGLVRGA---HEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERR 165 (406)
Q Consensus 89 ~i~lvD~~gl~~~~---~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~ 165 (406)
+.+..|+.... ....+.|++ +++..+-+++ .+|+++++| ||++.+|....+.....+..+.+
T Consensus 81 ---~l~~~gl~~~~~~~~~~LS~G~~--qrl~laral~------~~p~llllD---EP~~~LD~~~~~~~~~~l~~~~~- 145 (180)
T cd03214 81 ---ALELLGLAHLADRPFNELSGGER--QRVLLARALA------QEPPILLLD---EPTSHLDIAHQIELLELLRRLAR- 145 (180)
T ss_pred ---HHHHcCCHhHhcCCcccCCHHHH--HHHHHHHHHh------cCCCEEEEe---CCccCCCHHHHHHHHHHHHHHHH-
Confidence 22222222111 111122222 3344444443 499999999 99999999876444332221110
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc
Q 015465 166 IEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (406)
Q Consensus 166 l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~ 201 (406)
.....+ .-.+|+...+.++||++ ..|++|++.
T Consensus 146 --~~~~ti-ii~sh~~~~~~~~~d~~-~~l~~g~i~ 177 (180)
T cd03214 146 --ERGKTV-VMVLHDLNLAARYADRV-ILLKDGRIV 177 (180)
T ss_pred --hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEE
Confidence 000111 11139998888999998 677777654
No 83
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=7.3e-14 Score=131.34 Aligned_cols=171 Identities=16% Similarity=0.207 Sum_probs=101.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----------hhhccCCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLFKPKSA 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----------~~~~~p~~~ 85 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|+.|.|.++|.++... ...|.|+..
T Consensus 23 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (233)
T cd03258 23 DVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL-----------ERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHF 91 (233)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCc
Confidence 34466889999999999999999999999999 679999999998765321 123555552
Q ss_pred -cCceeEEEeecccccccc--CCC---CCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCC
Q 015465 86 -VPAFLEIHDIAGLVRGAH--EGQ---GLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 86 -~~~~i~lvD~~gl~~~~~--~~~---~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
.+..+++.|...+..... ... .....+++.+... .-.+.+++++ .+|+++++| ||+
T Consensus 92 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD---EP~ 168 (233)
T cd03258 92 NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCD---EAT 168 (233)
T ss_pred ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCC
Confidence 222344444332211000 000 0000111111000 0114455665 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+++|....+....-+..+. ..-...+ .-.+|+...+..+|+++ .+|++|+++..++
T Consensus 169 ~~LD~~~~~~l~~~l~~~~---~~~~~tv-ii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 224 (233)
T cd03258 169 SALDPETTQSILALLRDIN---RELGLTI-VLITHEMEVVKRICDRV-AVMEKGEVVEEGT 224 (233)
T ss_pred CcCCHHHHHHHHHHHHHHH---HHcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 9999998644333221110 0000111 11239999999999999 8889998876543
No 84
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=9.8e-14 Score=128.50 Aligned_cols=167 Identities=19% Similarity=0.179 Sum_probs=98.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.+.++|.++.... ..|.+|. ..+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 84 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF-----------ETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAH 84 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcCcCCHhHccEEEEecccccCCC
Confidence 55667899999999999999999999999999 6789999999887543211 2344444 22222
Q ss_pred eEEEeeccccccccCC-----CCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAHEG-----QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~-----~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+....... .......++.+... .-.+.+++++ .+|+++++| ||++.+|.
T Consensus 85 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllD---EP~~~LD~ 161 (211)
T cd03298 85 LTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLD---EPFAALDP 161 (211)
T ss_pred CcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCH
Confidence 3333332221100000 00000011110000 0114456666 789999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~ 201 (406)
...+.....+..+.+ .....+ .-.+|+...+..+||++ ..|++|++.
T Consensus 162 ~~~~~l~~~l~~~~~---~~~~ti-i~~sH~~~~~~~~~d~i-~~l~~G~i~ 208 (211)
T cd03298 162 ALRAEMLDLVLDLHA---ETKMTV-LMVTHQPEDAKRLAQRV-VFLDNGRIA 208 (211)
T ss_pred HHHHHHHHHHHHHHH---hcCCEE-EEEecCHHHHHhhhCEE-EEEECCEEe
Confidence 986443332211100 000011 11139999999999998 778888764
No 85
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=9.9e-14 Score=131.07 Aligned_cols=171 Identities=14% Similarity=0.168 Sum_probs=100.2
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
+...++.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..+..
T Consensus 20 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~ 88 (239)
T cd03296 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGL-----------ERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRH 88 (239)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCccccceEEEecCCcccCC
Confidence 34456789999999999999999999999999 6789999999987643211 2344544 22222
Q ss_pred eEEEeeccccccccC-----C-C---CCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCc
Q 015465 90 LEIHDIAGLVRGAHE-----G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 90 i~lvD~~gl~~~~~~-----~-~---~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
+++.|...+...... . . .....+++.+...+ -.+.+++++ .+|+++++| ||++
T Consensus 89 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EP~~ 165 (239)
T cd03296 89 MTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD---EPFG 165 (239)
T ss_pred CCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcc
Confidence 333333222110000 0 0 00000111110000 014456666 789999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.+|....+.....+..+. ......+.. .+|+...+..+|+++ ..|.+|++...++
T Consensus 166 ~LD~~~~~~l~~~l~~~~---~~~~~tvii-~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 220 (239)
T cd03296 166 ALDAKVRKELRRWLRRLH---DELHVTTVF-VTHDQEEALEVADRV-VVMNKGRIEQVGT 220 (239)
T ss_pred cCCHHHHHHHHHHHHHHH---HHcCCEEEE-EeCCHHHHHHhCCEE-EEEECCeEEEecC
Confidence 999988644433221111 000111111 139999899999999 7788898775543
No 86
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.41 E-value=2.5e-13 Score=121.85 Aligned_cols=172 Identities=17% Similarity=0.303 Sum_probs=114.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-----hhh---hccCCCCcC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ---LFKPKSAVP 87 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-----l~~---~~~p~~~~~ 87 (406)
...-++++|.+.+||||||||||||+.+++.+ +.+++|.|.++|.++.. ++. .......+.
T Consensus 19 ~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL-----------~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 19 DVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL-----------LKKDSGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred cceeeecCCceeEEECCCCccHHHHHHHHHHh-----------ccccCceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 34456889999999999999999999999999 88999999999987643 222 233444666
Q ss_pred ceeEEEeeccccccccCCCCCc--------------------chhhhhHHhhh-chhhhhccc-CCCceEeecCCCCCCc
Q 015465 88 AFLEIHDIAGLVRGAHEGQGLG--------------------NSFLSHIRAVD-GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~~~~l~--------------------~~~l~~l~~ad-~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
..+++-|++++++.++....+. .+++..+..-. -..+++-.+ ++.+.+++| ||.+
T Consensus 88 ~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLD---EPLN 164 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLD---EPLN 164 (252)
T ss_pred heeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEec---Cccc
Confidence 7789999999998775421111 12222221000 001222223 788999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
.+|.-...-++.. +++.-+.+.+.+- -.-|+......-.|.| ..|++|+++..|+.
T Consensus 165 NLDmkHsv~iMk~---Lrrla~el~Ktiv-iVlHDINfAS~YsD~I-VAlK~G~vv~~G~~ 220 (252)
T COG4604 165 NLDMKHSVQIMKI---LRRLADELGKTIV-VVLHDINFASCYSDHI-VALKNGKVVKQGSP 220 (252)
T ss_pred ccchHHHHHHHHH---HHHHHHHhCCeEE-EEEecccHHHhhhhhe-eeecCCEEEecCCH
Confidence 9998875333332 2222233332221 1128888888888988 77899999988753
No 87
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.41 E-value=8.4e-14 Score=128.88 Aligned_cols=163 Identities=20% Similarity=0.193 Sum_probs=93.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----h--hhccCCCC--c
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA--V 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~p~~~--~ 86 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.|+.. .
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL-----------LGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQ 87 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEcccCCHHHHHhhceEEecChhhh
Confidence 34456889999999999999999999999999 679999999988754321 1 13555542 1
Q ss_pred CceeEEEeecccccc---ccCC--CCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCch
Q 015465 87 PAFLEIHDIAGLVRG---AHEG--QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~---~~~~--~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ 146 (406)
....++.|...+... .... ......+++.+... .-.+.+++++ .+|+++++| ||++.
T Consensus 88 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EPt~~ 164 (211)
T cd03225 88 FFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD---EPTAG 164 (211)
T ss_pred cCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCccc
Confidence 222333333221100 0000 00000011111000 0014456665 799999999 99999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCC
Q 015465 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (406)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g 198 (406)
+|....+.....+..+. .. ...+ .-.+|+...+..+|+++ ..|.+|
T Consensus 165 LD~~~~~~~~~~l~~~~---~~-~~tv-i~~sH~~~~~~~~~d~i-~~l~~G 210 (211)
T cd03225 165 LDPAGRRELLELLKKLK---AE-GKTI-IIVTHDLDLLLELADRV-IVLEDG 210 (211)
T ss_pred CCHHHHHHHHHHHHHHH---Hc-CCEE-EEEeCCHHHHHHhCCEE-EEEeCC
Confidence 99998644433221110 00 1111 11239999988899988 556555
No 88
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.40 E-value=2.2e-13 Score=127.82 Aligned_cols=172 Identities=16% Similarity=0.200 Sum_probs=102.7
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------hhhccCCCC-
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKSA- 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~p~~~- 85 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.|+..
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 85 (230)
T TIGR03410 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL-----------LPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGRE 85 (230)
T ss_pred cceeeEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCc
Confidence 344556889999999999999999999999999 779999999988654211 123555552
Q ss_pred cCceeEEEeeccccccccC-C-CCCcchhhhhHHh-h---h-----------chhhhhccc-CCCceEeecCCCCCCchH
Q 015465 86 VPAFLEIHDIAGLVRGAHE-G-QGLGNSFLSHIRA-V---D-----------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~-~-~~l~~~~l~~l~~-a---d-----------~ll~vvda~-~~~~il~ld~~~dP~~~l 147 (406)
.+..+++.|...+...... . ......++..+.. . + -.+.++++. .+|+++++| ||++.+
T Consensus 86 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlD---EPt~~L 162 (230)
T TIGR03410 86 IFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLD---EPTEGI 162 (230)
T ss_pred ccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCcccC
Confidence 2223344443322111100 0 0000111111110 0 0 014455555 799999999 999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|....+.....+..+ .+.....+.. .+|+...+..+|+++ .+|.+|+++..++
T Consensus 163 D~~~~~~l~~~l~~~---~~~~~~tii~-~sH~~~~~~~~~d~v-~~l~~g~i~~~~~ 215 (230)
T TIGR03410 163 QPSIIKDIGRVIRRL---RAEGGMAILL-VEQYLDFARELADRY-YVMERGRVVASGA 215 (230)
T ss_pred CHHHHHHHHHHHHHH---HHcCCcEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 999864433322111 1000111111 139999999999999 8889998876654
No 89
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.40 E-value=3.1e-14 Score=142.06 Aligned_cols=171 Identities=14% Similarity=0.132 Sum_probs=107.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
+....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..+..
T Consensus 22 ~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~ 90 (353)
T TIGR03265 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL-----------ERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPN 90 (353)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCC
Confidence 34556789999999999999999999999999 6799999999997654321 2355555 34445
Q ss_pred eEEEeeccccccccC---C--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAHE---G--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~~---~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.+...+...... . ......+++.+...+ --+.++++. .+|+++++| ||++.+|.
T Consensus 91 ~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD---EP~s~LD~ 167 (353)
T TIGR03265 91 LTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLD---EPLSALDA 167 (353)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCH
Confidence 666665544311100 0 000001111111100 014455665 799999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
...+.....+..+ .......+ .-.+|+..++..+||++ .+|++|+++..|+
T Consensus 168 ~~r~~l~~~L~~l---~~~~~~tv-i~vTHd~~ea~~l~d~i-~vl~~G~i~~~g~ 218 (353)
T TIGR03265 168 RVREHLRTEIRQL---QRRLGVTT-IMVTHDQEEALSMADRI-VVMNHGVIEQVGT 218 (353)
T ss_pred HHHHHHHHHHHHH---HHhcCCEE-EEEcCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 8864443332211 11111111 11239999999999999 9999999887654
No 90
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.40 E-value=2.9e-14 Score=142.44 Aligned_cols=172 Identities=18% Similarity=0.213 Sum_probs=106.8
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----------hhhccCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPK 83 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~p~ 83 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++..+ ...|.+|
T Consensus 10 ~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl-----------~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL-----------IEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred EeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 445566889999999999999999999999999 789999999999765321 1235555
Q ss_pred C-CcCceeEEEeeccccccccC--C---CCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCC
Q 015465 84 S-AVPAFLEIHDIAGLVRGAHE--G---QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 84 ~-~~~~~i~lvD~~gl~~~~~~--~---~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~d 142 (406)
. ..+..+++.|...+...... . ......+++.+... .--+.+++|. .+|+++++| |
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD---E 155 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD---E 155 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 4 33334455554433211100 0 00000111111000 0014466666 799999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++.+|+...+.....+..+. ......+ .-.+|++.++..+|++| .+|.+|+++..|+
T Consensus 156 P~saLD~~~r~~l~~~l~~l~---~~~~~Ti-i~vTHd~~ea~~~~drI-~vl~~G~iv~~g~ 213 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQ---ATLQKTI-VFITHDLDEAIRIGDRI-VIMKAGEIVQVGT 213 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHH---HhcCCEE-EEEeCCHHHHHHhCCEE-EEEeCCEEEeeCC
Confidence 999999998654433322111 1111111 11239999999999999 8999999876654
No 91
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.40 E-value=8.1e-14 Score=133.30 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=100.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh--hhccCCC-CcCceeEE
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKS-AVPAFLEI 92 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~p~~-~~~~~i~l 92 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++..+. ..|.+|. ..+...++
T Consensus 30 ~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv 98 (257)
T PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL-----------ETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKV 98 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcH
Confidence 34456789999999999999999999999999 6799999998886653322 1344544 22222333
Q ss_pred EeeccccccccCCCCCcchhhhhHHh--------------hhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhh
Q 015465 93 HDIAGLVRGAHEGQGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLK 157 (406)
Q Consensus 93 vD~~gl~~~~~~~~~l~~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~ 157 (406)
.|...+..... .......+++.+.. -.-.+.+++++ .+|+++++| ||++++|.........
T Consensus 99 ~enl~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD---EPt~~LD~~~~~~l~~ 174 (257)
T PRK11247 99 IDNVGLGLKGQ-WRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD---EPLGALDALTRIEMQD 174 (257)
T ss_pred HHHHHhcccch-HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHHHH
Confidence 33322210000 00000001111000 00114455555 699999999 9999999998644433
Q ss_pred hHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 158 DIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 158 di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.+..+ .......+.. .+|+...+..+|+++ ..|.+|+++..++
T Consensus 175 ~L~~~---~~~~~~tvii-vsHd~~~~~~~~d~i-~~l~~G~i~~~~~ 217 (257)
T PRK11247 175 LIESL---WQQHGFTVLL-VTHDVSEAVAMADRV-LLIEEGKIGLDLT 217 (257)
T ss_pred HHHHH---HHHcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEeecc
Confidence 22211 1100111111 239999999999999 8888898776543
No 92
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.39 E-value=9.6e-14 Score=129.33 Aligned_cols=168 Identities=19% Similarity=0.223 Sum_probs=101.5
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----h--hhccCCC-CcC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPKS-AVP 87 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~--~~~~p~~-~~~ 87 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|. ..+
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~ 87 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE-----------LRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALF 87 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEecccchHHHhhhEEEecCcCCcc
Confidence 344556889999999999999999999999999 679999999988765321 1 1345544 222
Q ss_pred ceeEEEeeccccccccC--CC---CCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchH
Q 015465 88 AFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~--~~---~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~l 147 (406)
...++.|...+...... .. .....+++.+...+ -.+.+++++ .+|+++++| ||++.+
T Consensus 88 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP~~~L 164 (220)
T cd03263 88 DELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD---EPTSGL 164 (220)
T ss_pred ccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCCCCC
Confidence 23344443322110000 00 00011111111111 014455665 799999999 999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 148 EVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|....+.....+ ..+.+ .+ .-.+|+...+..+|+++ .+|++|++...++
T Consensus 165 D~~~~~~l~~~l-------~~~~~~~ti-i~~sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 215 (220)
T cd03263 165 DPASRRAIWDLI-------LEVRKGRSI-ILTTHSMDEAEALCDRI-AIMSDGKLRCIGS 215 (220)
T ss_pred CHHHHHHHHHHH-------HHHhcCCEE-EEEcCCHHHHHHhcCEE-EEEECCEEEecCC
Confidence 998864443322 21111 11 11139999999999999 7889998776543
No 93
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.39 E-value=1.5e-13 Score=127.64 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=101.5
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.++. ..+..
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~ 84 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF-----------IEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAH 84 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEcccCChhccceEEEeccCccCCC
Confidence 45567889999999999999999999999999 7899999999887643211 2344544 22323
Q ss_pred eEEEeeccccc-cccC----CCCCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVR-GAHE----GQGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~-~~~~----~~~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+.. .... .......+++.+...+. .+.+++++ .+|+++++| ||++.+|.
T Consensus 85 ~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~~LD~ 161 (213)
T TIGR01277 85 LTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLD---EPFSALDP 161 (213)
T ss_pred CcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCH
Confidence 44444433211 0000 00000111111111110 14456665 789999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
...+.....+..+ .+.....+ .-.+|+...+.++||++ ..|++|++...+
T Consensus 162 ~~~~~~~~~l~~~---~~~~~~ti-i~vsh~~~~~~~~~d~v-~~l~~g~i~~~~ 211 (213)
T TIGR01277 162 LLREEMLALVKQL---CSERQRTL-LMVTHHLSDARAIASQI-AVVSQGKIKVVS 211 (213)
T ss_pred HHHHHHHHHHHHH---HHhcCCEE-EEEeCCHHHHHhhcCeE-EEEECCeEEEec
Confidence 9864433322111 11001111 11138998888999998 778888876544
No 94
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.39 E-value=3.1e-13 Score=123.78 Aligned_cols=156 Identities=17% Similarity=0.233 Sum_probs=95.6
Q ss_pred cCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcccc--CCceeEEEcCCcchhhh----hhhccCCC-Cc
Q 015465 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI--EPNEARVNIPDERFEWL----CQLFKPKS-AV 86 (406)
Q Consensus 14 ~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~--~p~~G~i~v~g~~~~~l----~~~~~p~~-~~ 86 (406)
-.+....+.+|++++|+|+||||||||+++|+|. . .|++|.|.++|.++... ...|.++. ..
T Consensus 25 l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl-----------~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~ 93 (194)
T cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR-----------RTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDIL 93 (194)
T ss_pred eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCceEEEECCEeCchHhhhheEEEccCcccC
Confidence 3455567889999999999999999999999999 6 78999999998765321 11244443 22
Q ss_pred CceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHH
Q 015465 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRI 166 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l 166 (406)
...+++.|...+..... ..+.|++ +++..+-+++ .+|+++++| ||++.+|....+..... +
T Consensus 94 ~~~~t~~~~i~~~~~~~-~LS~G~~--qrv~laral~------~~p~illlD---EP~~~LD~~~~~~l~~~-------l 154 (194)
T cd03213 94 HPTLTVRETLMFAAKLR-GLSGGER--KRVSIALELV------SNPSLLFLD---EPTSGLDSSSALQVMSL-------L 154 (194)
T ss_pred CCCCcHHHHHHHHHHhc-cCCHHHH--HHHHHHHHHH------cCCCEEEEe---CCCcCCCHHHHHHHHHH-------H
Confidence 22233333322211000 1111111 3333333333 499999999 99999999886433322 2
Q ss_pred HHHHH---HhhhccccchH-HHHHHHHHHHHHhhCCCcc
Q 015465 167 EDVEK---SMKRSNDKQLK-IEHELCQRVKAWLQDGKDV 201 (406)
Q Consensus 167 ~~~~~---~~~~~~~h~~~-~v~~l~~~i~~~L~~g~~~ 201 (406)
..+.+ .+ .-.+|+.. .+..+||++ .+|++|++.
T Consensus 155 ~~~~~~~~ti-ii~sh~~~~~~~~~~d~v-~~l~~G~i~ 191 (194)
T cd03213 155 RRLADTGRTI-ICSIHQPSSEIFELFDKL-LLLSQGRVI 191 (194)
T ss_pred HHHHhCCCEE-EEEecCchHHHHHhcCEE-EEEeCCEEE
Confidence 22211 11 01138875 677889988 778888764
No 95
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.39 E-value=4.2e-13 Score=121.16 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=84.7
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccc
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl 98 (406)
..+++|++++|+|+||||||||+++|+|. ..|++|.|.++|..+. |.+|. +.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~-----~~~q~-----------~~- 71 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQ-----------LIPNGDNDEWDGITPV-----YKPQY-----------ID- 71 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCCcEEEECCEEEE-----EEccc-----------CC-
Confidence 36789999999999999999999999999 7899999999875311 11111 00
Q ss_pred cccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccc
Q 015465 99 VRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND 178 (406)
Q Consensus 99 ~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~ 178 (406)
.+.|++ +++..+-+++. +|+++++| ||++.+|....+.....+..+ ..+-...+ .-.+
T Consensus 72 -------LSgGq~--qrv~laral~~------~p~lllLD---EPts~LD~~~~~~l~~~l~~~---~~~~~~ti-iivs 129 (177)
T cd03222 72 -------LSGGEL--QRVAIAAALLR------NATFYLFD---EPSAYLDIEQRLNAARAIRRL---SEEGKKTA-LVVE 129 (177)
T ss_pred -------CCHHHH--HHHHHHHHHhc------CCCEEEEE---CCcccCCHHHHHHHHHHHHHH---HHcCCCEE-EEEE
Confidence 122222 44444444444 99999999 999999998864433322111 00000001 1113
Q ss_pred cchHHHHHHHHHHHHHhhCCC
Q 015465 179 KQLKIEHELCQRVKAWLQDGK 199 (406)
Q Consensus 179 h~~~~v~~l~~~i~~~L~~g~ 199 (406)
|+...+..+|+++ ..|+++.
T Consensus 130 H~~~~~~~~~d~i-~~l~~~~ 149 (177)
T cd03222 130 HDLAVLDYLSDRI-HVFEGEP 149 (177)
T ss_pred CCHHHHHHhCCEE-EEEcCCC
Confidence 9999888899988 5666553
No 96
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.6e-13 Score=130.86 Aligned_cols=170 Identities=16% Similarity=0.268 Sum_probs=101.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----h--hhccCCCC-cC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA-VP 87 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~p~~~-~~ 87 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.+.++|.++... . ..|.|+.. ..
T Consensus 20 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (255)
T PRK11231 20 DLSLSLPTGKITALIGPNGCGKSTLLKCFARL-----------LTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTP 88 (255)
T ss_pred eeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCC
Confidence 34456889999999999999999999999999 678999999998765321 1 23555542 22
Q ss_pred ceeEEEeeccccccc----cC--CCC---CcchhhhhHHhh---h-----------chhhhhccc-CCCceEeecCCCCC
Q 015465 88 AFLEIHDIAGLVRGA----HE--GQG---LGNSFLSHIRAV---D-----------GIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~----~~--~~~---l~~~~l~~l~~a---d-----------~ll~vvda~-~~~~il~ld~~~dP 143 (406)
..+++.|...+.... .. ... .....++.+... + --+.+++++ .+|+++++| ||
T Consensus 89 ~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP 165 (255)
T PRK11231 89 EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD---EP 165 (255)
T ss_pred CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CC
Confidence 233444433221100 00 000 000011110000 0 014455665 789999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++++|....+....-+..+ ......+ .-.+|+...+.++|+++ .+|++|++...++
T Consensus 166 ~~~LD~~~~~~l~~~l~~l----~~~~~ti-ii~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 221 (255)
T PRK11231 166 TTYLDINHQVELMRLMREL----NTQGKTV-VTVLHDLNQASRYCDHL-VVLANGHVMAQGT 221 (255)
T ss_pred cccCCHHHHHHHHHHHHHH----HHCCCEE-EEEECCHHHHHHhcCEE-EEEECCeEEEEcC
Confidence 9999998864433322111 1001111 11139999999999999 8889998876543
No 97
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=7.6e-14 Score=135.59 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=102.2
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh---------h--hhhccCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------L--CQLFKPK 83 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~---------l--~~~~~p~ 83 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. . ...|.++
T Consensus 24 ~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q 92 (287)
T PRK13641 24 DNISFELEEGSFVALVGHTGSGKSTLMQHFNAL-----------LKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQ 92 (287)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccchHHHHHhceEEEEe
Confidence 344566889999999999999999999999999 78999999999976421 1 1235555
Q ss_pred CC--cCceeEEEeeccccccccC--CCC---CcchhhhhHHhh---------------hchhhhhccc-CCCceEeecCC
Q 015465 84 SA--VPAFLEIHDIAGLVRGAHE--GQG---LGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 84 ~~--~~~~i~lvD~~gl~~~~~~--~~~---l~~~~l~~l~~a---------------d~ll~vvda~-~~~~il~ld~~ 140 (406)
.. .....++.|...+...... ... ....+++.+... .-.+.+++++ .+|+++++|
T Consensus 93 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLD-- 170 (287)
T PRK13641 93 FPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLD-- 170 (287)
T ss_pred ChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE--
Confidence 42 1112344443322110000 000 000111111110 0013455555 689999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|....+.....+.. +.+-...+.. .+|++..+..+||++ .+|++|+++..++
T Consensus 171 -EPt~gLD~~~~~~l~~~l~~----l~~~g~tvli-vsH~~~~~~~~~d~v-~~l~~G~i~~~g~ 228 (287)
T PRK13641 171 -EPAAGLDPEGRKEMMQLFKD----YQKAGHTVIL-VTHNMDDVAEYADDV-LVLEHGKLIKHAS 228 (287)
T ss_pred -CCCCCCCHHHHHHHHHHHHH----HHhCCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999886433332211 1100111111 139999999999999 8889999876654
No 98
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=3.3e-13 Score=127.55 Aligned_cols=170 Identities=19% Similarity=0.280 Sum_probs=101.2
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh------h--hhhccCCCC-c
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------L--CQLFKPKSA-V 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------l--~~~~~p~~~-~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. . ...|.|+.. .
T Consensus 21 ~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 89 (241)
T PRK10895 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI-----------VPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASI 89 (241)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcc
Confidence 34456889999999999999999999999999 67999999999865421 1 124556552 3
Q ss_pred CceeEEEeeccccccccC---CC---CCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCc
Q 015465 87 PAFLEIHDIAGLVRGAHE---GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~---~~---~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
...+++.|...+...... .. .....+++.+...+ -.+.+++++ .+|+++++| ||++
T Consensus 90 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~ 166 (241)
T PRK10895 90 FRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD---EPFA 166 (241)
T ss_pred cccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcc
Confidence 333344443322110000 00 00001111110000 014455665 799999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++|....+....-+.. +......+ .-.+|+...+..+|+++ ..|++|++...++
T Consensus 167 ~LD~~~~~~l~~~l~~----~~~~g~ti-ii~sH~~~~~~~~~d~v-~~l~~G~i~~~~~ 220 (241)
T PRK10895 167 GVDPISVIDIKRIIEH----LRDSGLGV-LITDHNVRETLAVCERA-YIVSQGHLIAHGT 220 (241)
T ss_pred cCCHHHHHHHHHHHHH----HHhcCCEE-EEEEcCHHHHHHhcCEE-EEEeCCeEEeeCC
Confidence 9999876443222111 11001111 11139999999999998 8889998876554
No 99
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.39 E-value=4.2e-13 Score=136.93 Aligned_cols=166 Identities=19% Similarity=0.265 Sum_probs=105.9
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh--------hccCCC-C
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--------LFKPKS-A 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~--------~~~p~~-~ 85 (406)
....-.+.+|++.+|+|.||||||||+|+|+|. ..|++|.|.++|+.+...+. ....|. .
T Consensus 25 ~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv-----------~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~ 93 (500)
T COG1129 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGV-----------YPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELS 93 (500)
T ss_pred ccceeEEeCceEEEEecCCCCCHHHHHHHHhCc-----------ccCCCceEEECCEEccCCCHHHHHhCCcEEEeechh
Confidence 344456789999999999999999999999999 67999999999987643221 112222 2
Q ss_pred cCceeEEEeeccccccccCCCCCcc---------hhhhhHHh---hhc-----------hhhhhccc-CCCceEeecCCC
Q 015465 86 VPAFLEIHDIAGLVRGAHEGQGLGN---------SFLSHIRA---VDG-----------IFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~~~l~~---------~~l~~l~~---ad~-----------ll~vvda~-~~~~il~ld~~~ 141 (406)
+-..+++.++.-+...+....++.+ +.++.+.. .+. ++.+++|. .++.++++|
T Consensus 94 L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlD--- 170 (500)
T COG1129 94 LVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILD--- 170 (500)
T ss_pred ccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEc---
Confidence 2334444444444433332111111 11111110 111 24566666 678899999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc-----ccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~-----~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+..-+. +..++.+.+....+. +|.+.++.++||++ .+|.+|+.+...+
T Consensus 171 EPTaaLt~~E~----------~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Dri-tVlRDG~~v~~~~ 228 (500)
T COG1129 171 EPTAALTVKET----------ERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRI-TVLRDGRVVGTRP 228 (500)
T ss_pred CCcccCCHHHH----------HHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEE-EEEeCCEEeeecc
Confidence 99998877663 333344444333443 39999999999999 9999999875433
No 100
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.39 E-value=2.5e-13 Score=127.04 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=98.0
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh----------hhccCCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLFKPKS 84 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~----------~~~~p~~ 84 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|.
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~ 90 (228)
T cd03257 22 DDVSFSIKKGETLGLVGESGSGKSTLARAILGL-----------LKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQD 90 (228)
T ss_pred cCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEccccchhhHHHhhccEEEEecC
Confidence 344567889999999999999999999999999 6799999999887653211 1345554
Q ss_pred C---cCceeEEEeeccccc---cccCCCCC-c---chhhhhHHhh----h-----------chhhhhccc-CCCceEeec
Q 015465 85 A---VPAFLEIHDIAGLVR---GAHEGQGL-G---NSFLSHIRAV----D-----------GIFHVLRAF-EDPDIIHVD 138 (406)
Q Consensus 85 ~---~~~~i~lvD~~gl~~---~~~~~~~l-~---~~~l~~l~~a----d-----------~ll~vvda~-~~~~il~ld 138 (406)
. ....+++.|...+.. ........ . ..++..+... + -.+.+++++ .+|+++++|
T Consensus 91 ~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 91 PMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred chhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 2 222233333322110 00000000 0 0011111100 0 014455655 789999999
Q ss_pred CCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc
Q 015465 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (406)
Q Consensus 139 ~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~ 201 (406)
||++++|....+.....+..+. ......+ .-.+|+...+..+|+++ ..|++|++.
T Consensus 171 ---EPt~~LD~~~~~~l~~~l~~~~---~~~~~ti-i~~sH~~~~~~~~~d~i-~~l~~G~i~ 225 (228)
T cd03257 171 ---EPTSALDVSVQAQILDLLKKLQ---EELGLTL-LFITHDLGVVAKIADRV-AVMYAGKIV 225 (228)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHH---HHcCCEE-EEEeCCHHHHHHhcCeE-EEEeCCEEE
Confidence 9999999988644433222111 0001111 11239999998999998 778888764
No 101
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=3.4e-13 Score=121.23 Aligned_cols=148 Identities=18% Similarity=0.309 Sum_probs=87.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh------hhccCCCC-cCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKSA-VPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~p~~~-~~~ 88 (406)
+....+.+|+.++|+|+||||||||+++|+|. ..|++|.+.++|.++.... ..|.+|.. ...
T Consensus 18 ~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 86 (173)
T cd03230 18 DISLTVEKGEIYGLLGPNGAGKTTLIKIILGL-----------LKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYE 86 (173)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEcccchHhhhccEEEEecCCcccc
Confidence 44556889999999999999999999999999 6789999999987643211 11222221 110
Q ss_pred eeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHH
Q 015465 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIED 168 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~ 168 (406)
..++.|... .+.|++ +++..+-+++ .+|+++++| ||++.+|....+.....+..+ .++
T Consensus 87 ~~tv~~~~~--------LS~G~~--qrv~laral~------~~p~illlD---EPt~~LD~~~~~~l~~~l~~~---~~~ 144 (173)
T cd03230 87 NLTVRENLK--------LSGGMK--QRLALAQALL------HDPELLILD---EPTSGLDPESRREFWELLREL---KKE 144 (173)
T ss_pred CCcHHHHhh--------cCHHHH--HHHHHHHHHH------cCCCEEEEe---CCccCCCHHHHHHHHHHHHHH---HHC
Confidence 111111110 111111 3333333333 599999999 999999998864433322111 000
Q ss_pred HHHHhhhccccchHHHHHHHHHHHHHhhCCC
Q 015465 169 VEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (406)
Q Consensus 169 ~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~ 199 (406)
...+ .-.+|+...+..+|+++ ..|.+|+
T Consensus 145 -g~ti-ii~th~~~~~~~~~d~i-~~l~~g~ 172 (173)
T cd03230 145 -GKTI-LLSSHILEEAERLCDRV-AILNNGR 172 (173)
T ss_pred -CCEE-EEECCCHHHHHHhCCEE-EEEeCCC
Confidence 0111 01138888888888887 5566554
No 102
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.38 E-value=3.5e-13 Score=124.88 Aligned_cols=164 Identities=18% Similarity=0.237 Sum_probs=95.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCC-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA- 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~- 85 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.+.++|.++.. .. ..|.|+..
T Consensus 18 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (213)
T cd03262 18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL-----------EEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFN 86 (213)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCccchhHHHHHhcceEEecccc
Confidence 34456889999999999999999999999999 67899999999875421 11 23555542
Q ss_pred cCceeEEEeeccccc----cccC--CCCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCC
Q 015465 86 VPAFLEIHDIAGLVR----GAHE--GQGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~----~~~~--~~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
....+++.|...+.. .... .......+++.+... .-.+.++++. .+|+++++| ||+
T Consensus 87 ~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP~ 163 (213)
T cd03262 87 LFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD---EPT 163 (213)
T ss_pred cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe---CCc
Confidence 222334444332211 0000 000000011111000 0014455665 789999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~ 199 (406)
+++|....+.....+..+. +-...+.. .+|+...+..+|+++ .+|++|+
T Consensus 164 ~~LD~~~~~~l~~~l~~~~----~~~~tvi~-~sh~~~~~~~~~d~i-~~l~~g~ 212 (213)
T cd03262 164 SALDPELVGEVLDVMKDLA----EEGMTMVV-VTHEMGFAREVADRV-IFMDDGR 212 (213)
T ss_pred cCCCHHHHHHHHHHHHHHH----HcCCEEEE-EeCCHHHHHHhCCEE-EEEeCCc
Confidence 9999988644333221111 00011111 239999999999988 6666664
No 103
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.38 E-value=1.6e-13 Score=137.85 Aligned_cols=171 Identities=15% Similarity=0.178 Sum_probs=105.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
+....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..+..
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~ 89 (369)
T PRK11000 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-----------EDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPH 89 (369)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCC
Confidence 34456889999999999999999999999999 7799999999987653221 2355554 23333
Q ss_pred eEEEeeccccccc---cCC--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGA---HEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~---~~~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+.... ... ......+++.+...+ -.+.+++++ .+|+++++| ||++.+|.
T Consensus 90 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD---EPts~LD~ 166 (369)
T PRK11000 90 LSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD---EPLSNLDA 166 (369)
T ss_pred CCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCH
Confidence 4555544332110 000 000001111111100 014456666 799999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
...+.....+..+.+ .....+ .-.+|+..++..+||++ .+|++|++...++
T Consensus 167 ~~~~~l~~~L~~l~~---~~g~tv-I~vTHd~~~~~~~~d~i-~vl~~G~i~~~g~ 217 (369)
T PRK11000 167 ALRVQMRIEISRLHK---RLGRTM-IYVTHDQVEAMTLADKI-VVLDAGRVAQVGK 217 (369)
T ss_pred HHHHHHHHHHHHHHH---HhCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 986544333221111 111111 11239999999999999 8899999876654
No 104
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=4.2e-13 Score=123.75 Aligned_cols=161 Identities=16% Similarity=0.205 Sum_probs=96.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccC---CceeEEEcCCcchhhhh------hhccCCC-C
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDERFEWLC------QLFKPKS-A 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~---p~~G~i~v~g~~~~~l~------~~~~p~~-~ 85 (406)
+....+.+|++++|+|+||||||||+++|+|. .. |++|.+.++|.++.... ..|.++. .
T Consensus 25 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~ 93 (202)
T cd03233 25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-----------TEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDV 93 (202)
T ss_pred eEEEEECCCcEEEEECCCCCCHHHHHHHhccc-----------CCCCCCcceEEEECCEECccchhhhcceEEEEecccc
Confidence 44556889999999999999999999999999 45 78999999987653221 1344443 2
Q ss_pred cCceeEEEeeccccccc--c---CCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHH
Q 015465 86 VPAFLEIHDIAGLVRGA--H---EGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~--~---~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~ 160 (406)
....+++.|...+.... . ...+.|+ .+++..+-+++. +|+++++| ||++.+|....+....-+.
T Consensus 94 ~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge--~qrl~laral~~------~p~llllD---EPt~~LD~~~~~~~~~~l~ 162 (202)
T cd03233 94 HFPTLTVRETLDFALRCKGNEFVRGISGGE--RKRVSIAEALVS------RASVLCWD---NSTRGLDSSTALEILKCIR 162 (202)
T ss_pred cCCCCcHHHHHhhhhhhccccchhhCCHHH--HHHHHHHHHHhh------CCCEEEEc---CCCccCCHHHHHHHHHHHH
Confidence 22233444443322110 0 0011122 233444444444 99999999 9999999998654433222
Q ss_pred HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccc
Q 015465 161 FMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (406)
Q Consensus 161 ~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~ 202 (406)
.+.+ .....+.....|....+.++|+++ .+|++|+++.
T Consensus 163 ~~~~---~~~~t~ii~~~h~~~~~~~~~d~i-~~l~~G~i~~ 200 (202)
T cd03233 163 TMAD---VLKTTTFVSLYQASDEIYDLFDKV-LVLYEGRQIY 200 (202)
T ss_pred HHHH---hCCCEEEEEEcCCHHHHHHhCCeE-EEEECCEEEe
Confidence 1111 000000011125567888899998 7888887653
No 105
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=4.9e-14 Score=140.53 Aligned_cols=171 Identities=14% Similarity=0.180 Sum_probs=106.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
+....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..+..
T Consensus 24 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ 92 (351)
T PRK11432 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL-----------EKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPH 92 (351)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCC
Confidence 34566889999999999999999999999999 7899999999997653321 2344554 23334
Q ss_pred eEEEeeccccccccC-C-CC---CcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~~-~-~~---l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+...... . .. ....+++.+... .--+.++++. .+|+++++| ||++.+|.
T Consensus 93 ~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLD---EP~s~LD~ 169 (351)
T PRK11432 93 MSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFD---EPLSNLDA 169 (351)
T ss_pred CCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCCH
Confidence 555555543311000 0 00 000011110000 0014456666 799999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
...+.....+..+.+ .....+ .-.+|+..++..++|++ .+|++|++...++
T Consensus 170 ~~r~~l~~~l~~l~~---~~g~ti-i~vTHd~~e~~~laD~i-~vm~~G~i~~~g~ 220 (351)
T PRK11432 170 NLRRSMREKIRELQQ---QFNITS-LYVTHDQSEAFAVSDTV-IVMNKGKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHHHHHH---hcCCEE-EEEcCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 886544333222111 111111 11239999999999999 9999999876654
No 106
>PRK10908 cell division protein FtsE; Provisional
Probab=99.38 E-value=1.7e-13 Score=128.05 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=97.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----------hhhccCCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLFKPKSA 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----------~~~~~p~~~ 85 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++..+ ...|.+|..
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~ 88 (222)
T PRK10908 20 GVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI-----------ERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDH 88 (222)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccCChhHHHHHHhheEEEecCc
Confidence 33456789999999999999999999999999 678999999998755321 113555542
Q ss_pred -cCceeEEEeeccccc---cccCCC--CCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCC
Q 015465 86 -VPAFLEIHDIAGLVR---GAHEGQ--GLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 86 -~~~~i~lvD~~gl~~---~~~~~~--~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
.....++.|...+.. +..... .....+++.+... .-.+.+++++ .+|+++++| ||+
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt 165 (222)
T PRK10908 89 HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLAD---EPT 165 (222)
T ss_pred cccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEe---CCC
Confidence 222333333332210 000000 0000111111000 0014456666 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~ 201 (406)
+.+|....+....-+..+ ..-...+ .-.+|+...+..+|+++ ..|++|+++
T Consensus 166 ~~LD~~~~~~l~~~l~~~----~~~~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~ 216 (222)
T PRK10908 166 GNLDDALSEGILRLFEEF----NRVGVTV-LMATHDIGLISRRSYRM-LTLSDGHLH 216 (222)
T ss_pred CcCCHHHHHHHHHHHHHH----HHCCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEc
Confidence 999998864443322111 0000111 11139999999999998 778888765
No 107
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.38 E-value=1.2e-13 Score=137.84 Aligned_cols=171 Identities=15% Similarity=0.178 Sum_probs=105.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
+....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..+..
T Consensus 20 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~ 88 (353)
T PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGL-----------EHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRH 88 (353)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCC
Confidence 34456789999999999999999999999999 7799999999997653221 2355554 23333
Q ss_pred eEEEeecccccccc---CC---CC---CcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCc
Q 015465 90 LEIHDIAGLVRGAH---EG---QG---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 90 i~lvD~~gl~~~~~---~~---~~---l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
+++.|...+..... .. .. .....++.++..+. -+.+++|. .+|+++++| ||++
T Consensus 89 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD---EP~s 165 (353)
T PRK10851 89 MTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD---EPFG 165 (353)
T ss_pred CcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCc
Confidence 45544443321100 00 00 00011111111110 14566666 799999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.+|....+.....+..+.+ .....+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 166 ~LD~~~r~~l~~~L~~l~~---~~g~ti-i~vTHd~~ea~~~~Dri-~vl~~G~i~~~g~ 220 (353)
T PRK10851 166 ALDAQVRKELRRWLRQLHE---ELKFTS-VFVTHDQEEAMEVADRV-VVMSQGNIEQAGT 220 (353)
T ss_pred cCCHHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9999886544333221111 101111 11249999999999999 8999999876654
No 108
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.38 E-value=2.7e-13 Score=130.50 Aligned_cols=171 Identities=17% Similarity=0.153 Sum_probs=101.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------h--hhccCCC-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS- 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~p~~- 84 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|.
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 93 (269)
T PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ-----------IAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSG 93 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEccccChhhHHHHhhcEEEEeccc
Confidence 34566889999999999999999999999999 679999999998765321 1 2355554
Q ss_pred CcCceeEEEeeccccccccCC--C----CCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCC
Q 015465 85 AVPAFLEIHDIAGLVRGAHEG--Q----GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~~~~~--~----~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.....+++.|...+....... . ......+..+...+ -.+.+++++ .+|+++++| ||
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EP 170 (269)
T PRK11831 94 ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD---EP 170 (269)
T ss_pred ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CC
Confidence 222233444443321100000 0 00000011111000 114455555 689999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++++|....+.....+..+.+ .....+.. .+|+...+..+|+++ .+|++|++...++
T Consensus 171 t~~LD~~~~~~l~~~l~~~~~---~~g~tiii-vsH~~~~~~~~~d~v-~~l~~G~i~~~g~ 227 (269)
T PRK11831 171 FVGQDPITMGVLVKLISELNS---ALGVTCVV-VSHDVPEVLSIADHA-YIVADKKIVAHGS 227 (269)
T ss_pred CccCCHHHHHHHHHHHHHHHH---hcCcEEEE-EecCHHHHHHhhCEE-EEEECCEEEEeCC
Confidence 999999886444332221110 00011111 139999999999998 7889998876554
No 109
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.38 E-value=2.3e-13 Score=126.25 Aligned_cols=163 Identities=17% Similarity=0.229 Sum_probs=94.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh--hhccCCCC-cC--cee
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-VP--AFL 90 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~p~~~-~~--~~i 90 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|.. .+ ...
T Consensus 17 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~ 85 (213)
T cd03235 17 DVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL-----------LKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPI 85 (213)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCCEEEECCccHHHHHhheEEeccccccccCCCC
Confidence 34456889999999999999999999999999 6799999999997654222 23555542 11 112
Q ss_pred EEEeecccccccc-------C--CCCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCch
Q 015465 91 EIHDIAGLVRGAH-------E--GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (406)
Q Consensus 91 ~lvD~~gl~~~~~-------~--~~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ 146 (406)
++.|...+..... . .......+++.+...+ -.+.+++++ .+|+++++| ||++.
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EPt~~ 162 (213)
T cd03235 86 SVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLD---EPFAG 162 (213)
T ss_pred cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCccc
Confidence 3333322111000 0 0000001111111000 014455665 799999999 99999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCC
Q 015465 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (406)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g 198 (406)
+|....+.....+.. +..-...+ .-.+|+...+..+|+++ ..|++|
T Consensus 163 LD~~~~~~l~~~l~~----~~~~~~tv-i~~sH~~~~~~~~~d~i-~~l~~~ 208 (213)
T cd03235 163 VDPKTQEDIYELLRE----LRREGMTI-LVVTHDLGLVLEYFDRV-LLLNRT 208 (213)
T ss_pred CCHHHHHHHHHHHHH----HHhcCCEE-EEEeCCHHHHHHhcCEE-EEEcCc
Confidence 999886433332211 11000111 11139999888999988 556654
No 110
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=1.2e-13 Score=132.83 Aligned_cols=171 Identities=20% Similarity=0.260 Sum_probs=101.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----------hhhccCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPKS 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~p~~ 84 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.||.
T Consensus 42 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl-----------~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~ 110 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRL-----------IEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecC
Confidence 34456889999999999999999999999999 678999999988764321 12345554
Q ss_pred -CcCceeEEEeecccccccc---CC--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCC
Q 015465 85 -AVPAFLEIHDIAGLVRGAH---EG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~~~~~---~~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP 143 (406)
..+..+++.|...+..... .. ......+++.+...+ -.+.+++++ .+|+++++| ||
T Consensus 111 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLD---EP 187 (269)
T cd03294 111 FALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD---EA 187 (269)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CC
Confidence 2222334444332211000 00 000000111110000 014455555 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++++|....+.....+..+.+ .....+.. .+|+...+..+|+++ .+|++|++...++
T Consensus 188 t~~LD~~~~~~l~~~l~~~~~---~~g~tiii-~tH~~~~~~~~~d~v-~~l~~G~i~~~g~ 244 (269)
T cd03294 188 FSALDPLIRREMQDELLRLQA---ELQKTIVF-ITHDLDEALRLGDRI-AIMKDGRLVQVGT 244 (269)
T ss_pred CccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 999999986544333221111 00111111 239999999999998 7888898775543
No 111
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.38 E-value=1.3e-13 Score=130.41 Aligned_cols=169 Identities=16% Similarity=0.183 Sum_probs=101.5
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------hhhccCCC-Cc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKS-AV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~p~~-~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.++. ..
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 88 (242)
T TIGR03411 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGK-----------TRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTV 88 (242)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEECCeecCCCCHHHHHhcCeeEecccccc
Confidence 34556889999999999999999999999999 679999999998765321 12345544 22
Q ss_pred CceeEEEeeccccccccC-------------CCCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeec
Q 015465 87 PAFLEIHDIAGLVRGAHE-------------GQGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVD 138 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~-------------~~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld 138 (406)
+..+++.|...+...... .......+++.++.. ...+.+++++ .+|+++++|
T Consensus 89 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllD 168 (242)
T TIGR03411 89 FENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLD 168 (242)
T ss_pred CCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 323344433222100000 000000011111000 0114456666 789999999
Q ss_pred CCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 139 ~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|..........+..+ .. ...+.. .+|+...+..+|+++ .+|.+|+++..++
T Consensus 169 ---EPt~~LD~~~~~~l~~~l~~~----~~-~~tii~-~sH~~~~~~~~~d~i-~~l~~g~~~~~~~ 225 (242)
T TIGR03411 169 ---EPVAGMTDEETEKTAELLKSL----AG-KHSVVV-VEHDMEFVRSIADKV-TVLHQGSVLAEGS 225 (242)
T ss_pred ---CCccCCCHHHHHHHHHHHHHH----hc-CCEEEE-EECCHHHHHHhCCEE-EEEECCeEEeeCC
Confidence 999999999864443322211 11 111111 239999999999999 8889998876553
No 112
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.38 E-value=1.8e-13 Score=127.83 Aligned_cols=171 Identities=14% Similarity=0.150 Sum_probs=100.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh---hhhccCCC-CcCceeE
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---CQLFKPKS-AVPAFLE 91 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---~~~~~p~~-~~~~~i~ 91 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.|+. ..+..++
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t 86 (223)
T TIGR03740 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGI-----------LRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLT 86 (223)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEeccccccccEEEEcCCCCccccCC
Confidence 34456889999999999999999999999999 679999999988654311 12344443 2222233
Q ss_pred EEeeccccccccC-CCCCcchhhhhHHh--------------hhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHh
Q 015465 92 IHDIAGLVRGAHE-GQGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELR 155 (406)
Q Consensus 92 lvD~~gl~~~~~~-~~~l~~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~ 155 (406)
+.|..-+...... .......+++.+.. ....+.+++++ .+|+++++| ||++++|....+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllD---EP~~~LD~~~~~~l 163 (223)
T TIGR03740 87 ARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILD---EPTNGLDPIGIQEL 163 (223)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCccCCCHHHHHHH
Confidence 3333221100000 00000011111100 00114456666 799999999 99999999986443
Q ss_pred hhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 156 LKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 156 ~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
...+..+ ..-...+ .-.+|+...+..+|+++ ..|.+|++...++.
T Consensus 164 ~~~L~~~----~~~~~ti-ii~sH~~~~~~~~~d~i-~~l~~g~i~~~~~~ 208 (223)
T TIGR03740 164 RELIRSF----PEQGITV-ILSSHILSEVQQLADHI-GIISEGVLGYQGKI 208 (223)
T ss_pred HHHHHHH----HHCCCEE-EEEcCCHHHHHHhcCEE-EEEeCCEEEEecCh
Confidence 3322111 1000011 11139999999999999 88899988766553
No 113
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=2.2e-13 Score=129.80 Aligned_cols=171 Identities=13% Similarity=0.229 Sum_probs=101.2
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------h--hhccCCC-Cc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKS-AV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~p~~-~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++... . ..|.++. ..
T Consensus 23 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 91 (255)
T PRK11300 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF-----------YKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRL 91 (255)
T ss_pred eeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------cCCCcceEEECCEECCCCCHHHHHhcCeEEeccCccc
Confidence 34456789999999999999999999999999 789999999998764321 1 1244554 22
Q ss_pred CceeEEEeecccccc----------c------cCC-C---CCcchhhhhHHhhh--------------chhhhhccc-CC
Q 015465 87 PAFLEIHDIAGLVRG----------A------HEG-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-ED 131 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~----------~------~~~-~---~l~~~~l~~l~~ad--------------~ll~vvda~-~~ 131 (406)
+..+++.|...+... . ... . .....+++.+...+ --+.+++++ .+
T Consensus 92 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 171 (255)
T PRK11300 92 FREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQ 171 (255)
T ss_pred CCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 333344443221100 0 000 0 00000111111000 014455665 79
Q ss_pred CceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 132 ~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|+++++| ||++++|..........+..+. ++....+.. .+|+...+..+|+++ ..|++|++...++
T Consensus 172 p~llllD---EPt~~LD~~~~~~l~~~L~~~~---~~~~~tii~-~sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 237 (255)
T PRK11300 172 PEILMLD---EPAAGLNPKETKELDELIAELR---NEHNVTVLL-IEHDMKLVMGISDRI-YVVNQGTPLANGT 237 (255)
T ss_pred CCEEEEc---CCccCCCHHHHHHHHHHHHHHH---hhcCCEEEE-EeCCHHHHHHhCCEE-EEEECCeEEecCC
Confidence 9999999 9999999998644433221111 000111111 139999999999999 8889998876654
No 114
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=1.2e-13 Score=133.43 Aligned_cols=167 Identities=17% Similarity=0.200 Sum_probs=101.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----h--hhccCCCC--c
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA--V 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~p~~~--~ 86 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|.. .
T Consensus 23 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (274)
T PRK13647 23 GLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI-----------YLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQ 91 (274)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhh
Confidence 44456889999999999999999999999999 779999999999765321 1 23555542 1
Q ss_pred CceeEEEeeccccccccC--CC---CCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCch
Q 015465 87 PAFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~--~~---~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ 146 (406)
....++.+...+...... .. .....+++.+...+ -.+.+++|. .+|+++++| ||++.
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD---EPt~~ 168 (274)
T PRK13647 92 VFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD---EPMAY 168 (274)
T ss_pred hccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCCcC
Confidence 122343443332110000 00 00000111111000 114455665 799999999 99999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH---HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 147 LEVISAELRLKDIEFMERRIEDVEK---SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~---~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+|.........- +.++.+ .+ .-.+|++..+.+.||++ .+|++|+++..++
T Consensus 169 LD~~~~~~l~~~-------l~~~~~~g~ti-li~tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 221 (274)
T PRK13647 169 LDPRGQETLMEI-------LDRLHNQGKTV-IVATHDVDLAAEWADQV-IVLKEGRVLAEGD 221 (274)
T ss_pred CCHHHHHHHHHH-------HHHHHHCCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 999986433222 222111 11 11139999999999999 8889999887665
No 115
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.37 E-value=2.5e-13 Score=135.75 Aligned_cols=171 Identities=15% Similarity=0.128 Sum_probs=103.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh---------h--hhccCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C--QLFKPKS 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---------~--~~~~p~~ 84 (406)
.....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~ 83 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL-----------TRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQE 83 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECccCccccccchhhCCeEEEecC
Confidence 44556889999999999999999999999999 779999999988765321 0 1244444
Q ss_pred -CcCceeEEEeeccccccccCCCC---CcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCc
Q 015465 85 -AVPAFLEIHDIAGLVRGAHEGQG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~~~~~~~~~---l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
..+..+++.|...+......... ....+++.+...+ -.+.+++++ .+|+++++| ||++
T Consensus 84 ~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLD---EPts 160 (354)
T TIGR02142 84 ARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMD---EPLA 160 (354)
T ss_pred CccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCCc
Confidence 22333444444332211000000 0001111111000 014455665 799999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.+|....+.....+..+.+ .....+ .-.+|+..++..+||++ .+|++|++...++
T Consensus 161 ~LD~~~~~~l~~~L~~l~~---~~g~ti-iivtH~~~~~~~~~d~i-~~l~~G~i~~~g~ 215 (354)
T TIGR02142 161 ALDDPRKYEILPYLERLHA---EFGIPI-LYVSHSLQEVLRLADRV-VVLEDGRVAAAGP 215 (354)
T ss_pred CCCHHHHHHHHHHHHHHHH---hcCCEE-EEEecCHHHHHHhCCEE-EEEeCCEEEEECC
Confidence 9999986544333221111 001111 11239999999999999 8899999876654
No 116
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.37 E-value=1.6e-13 Score=127.29 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=94.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----------hhhccCCC-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLFKPKS- 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----------~~~~~p~~- 84 (406)
+...++.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.+|.
T Consensus 19 ~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 87 (214)
T cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKE-----------ELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDF 87 (214)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCc
Confidence 44466889999999999999999999999999 679999999988754321 12355554
Q ss_pred CcCceeEEEeeccccccccC--CCCC---cchhhhhHHh--------------hhchhhhhccc-CCCceEeecCCCCCC
Q 015465 85 AVPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~~~~--~~~l---~~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
.....+++.|...+...... .... ....++.+.. -.-.+.+++++ .+|+++++| ||+
T Consensus 88 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt 164 (214)
T cd03292 88 RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIAD---EPT 164 (214)
T ss_pred hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEe---CCC
Confidence 22222344443322110000 0000 0001111000 00114455665 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~ 199 (406)
+.+|....+.....+..+ .+-...+ .-.+|+...+..+|+++ ..|++|+
T Consensus 165 ~~LD~~~~~~~~~~l~~~----~~~~~ti-iivtH~~~~~~~~~d~i-~~l~~G~ 213 (214)
T cd03292 165 GNLDPDTTWEIMNLLKKI----NKAGTTV-VVATHAKELVDTTRHRV-IALERGK 213 (214)
T ss_pred CcCCHHHHHHHHHHHHHH----HHcCCEE-EEEeCCHHHHHHhCCEE-EEEeCCc
Confidence 999998864433322111 0000111 11139988888889888 6666664
No 117
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.37 E-value=4.6e-13 Score=120.36 Aligned_cols=146 Identities=17% Similarity=0.228 Sum_probs=86.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
.....+.+|+.++|+|+||||||||+++|+|. ..|++|.+.++|.++.... ..|.++.....
T Consensus 20 ~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (173)
T cd03246 20 NVSFSIEPGESLAIIGPSGSGKSTLARLILGL-----------LRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELF 88 (173)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccc
Confidence 34456789999999999999999999999999 6799999999987653211 12333321100
Q ss_pred eeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHH
Q 015465 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIED 168 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~ 168 (406)
..++.|.. .+.|++ +++..+.+++ .+|+++++| ||++.+|..........+..+ ..
T Consensus 89 ~~tv~~~l---------LS~G~~--qrv~la~al~------~~p~~lllD---EPt~~LD~~~~~~l~~~l~~~----~~ 144 (173)
T cd03246 89 SGSIAENI---------LSGGQR--QRLGLARALY------GNPRILVLD---EPNSHLDVEGERALNQAIAAL----KA 144 (173)
T ss_pred cCcHHHHC---------cCHHHH--HHHHHHHHHh------cCCCEEEEE---CCccccCHHHHHHHHHHHHHH----Hh
Confidence 00111111 111222 3444444444 499999999 999999999864433322111 00
Q ss_pred HHHHhhhccccchHHHHHHHHHHHHHhhCCC
Q 015465 169 VEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (406)
Q Consensus 169 ~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~ 199 (406)
-...+ .-.+|+...+ ..|+++ ..|.+|+
T Consensus 145 ~~~ti-i~~sh~~~~~-~~~d~v-~~l~~G~ 172 (173)
T cd03246 145 AGATR-IVIAHRPETL-ASADRI-LVLEDGR 172 (173)
T ss_pred CCCEE-EEEeCCHHHH-HhCCEE-EEEECCC
Confidence 00011 0113887766 468877 5555554
No 118
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=2.7e-13 Score=131.00 Aligned_cols=172 Identities=15% Similarity=0.158 Sum_probs=100.4
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-----hh--hhccCCCC--
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPKSA-- 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-----l~--~~~~p~~~-- 85 (406)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.. +. ..|.++..
T Consensus 21 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~ 89 (277)
T PRK13652 21 NNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI-----------LKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDD 89 (277)
T ss_pred eEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHhheEEEecCccc
Confidence 344456889999999999999999999999999 78999999999876432 11 13444442
Q ss_pred cCceeEEEeeccccccccC-CCC----CcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCc
Q 015465 86 VPAFLEIHDIAGLVRGAHE-GQG----LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~-~~~----l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
.....++.|...+...... ... ....++..+... ..-+.+++++ .+|+++++| ||++
T Consensus 90 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilD---EPt~ 166 (277)
T PRK13652 90 QIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLD---EPTA 166 (277)
T ss_pred ccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcc
Confidence 1111233332221100000 000 000000000000 0013455555 799999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++|..........+..+. ......+ .-.+|+...+.++|+++ .+|.+|+++..++
T Consensus 167 gLD~~~~~~l~~~l~~l~---~~~g~tv-li~tH~~~~~~~~~drv-~~l~~G~i~~~g~ 221 (277)
T PRK13652 167 GLDPQGVKELIDFLNDLP---ETYGMTV-IFSTHQLDLVPEMADYI-YVMDKGRIVAYGT 221 (277)
T ss_pred cCCHHHHHHHHHHHHHHH---HhcCCEE-EEEecCHHHHHHhCCEE-EEEECCeEEEECC
Confidence 999988643322221110 0001111 11139999999999999 8899999887664
No 119
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.37 E-value=3.9e-13 Score=125.93 Aligned_cols=169 Identities=20% Similarity=0.206 Sum_probs=101.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcccc-----CCceeEEEcCCcchhhhh---------hhcc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI-----EPNEARVNIPDERFEWLC---------QLFK 81 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~-----~p~~G~i~v~g~~~~~l~---------~~~~ 81 (406)
+....+.+|++++|+|+||||||||+++|+|. . .|++|.|.++|.++.... ..|.
T Consensus 18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 86 (227)
T cd03260 18 DISLDIPKGEITALIGPSGCGKSTLLRLLNRL-----------NDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMV 86 (227)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh-----------cccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEE
Confidence 34456889999999999999999999999999 5 689999999997754321 1355
Q ss_pred CCCCcCceeEEEeecccccccc---CC---CCCcchhhhhHHh-----h-----------hchhhhhccc-CCCceEeec
Q 015465 82 PKSAVPAFLEIHDIAGLVRGAH---EG---QGLGNSFLSHIRA-----V-----------DGIFHVLRAF-EDPDIIHVD 138 (406)
Q Consensus 82 p~~~~~~~i~lvD~~gl~~~~~---~~---~~l~~~~l~~l~~-----a-----------d~ll~vvda~-~~~~il~ld 138 (406)
+|.......++.|...+..... .. ......+++.+.. . .-.+.+++++ .+|+++++|
T Consensus 87 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD 166 (227)
T cd03260 87 FQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLD 166 (227)
T ss_pred ecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6552111344444332211000 00 0000001111000 0 0113455555 789999999
Q ss_pred CCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 139 ~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|....+.....+..+ .+. ..+ .-.+|+...+..+|+++ .+|.+|+++..++
T Consensus 167 ---EPt~~LD~~~~~~l~~~l~~~---~~~--~ti-i~~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 223 (227)
T cd03260 167 ---EPTSALDPISTAKIEELIAEL---KKE--YTI-VIVTHNMQQAARVADRT-AFLLNGRLVEFGP 223 (227)
T ss_pred ---CCCccCCHHHHHHHHHHHHHH---hhC--cEE-EEEeccHHHHHHhCCEE-EEEeCCEEEEecC
Confidence 999999999865443332211 111 111 11239999999999999 8888998776554
No 120
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.37 E-value=2.1e-13 Score=136.41 Aligned_cols=171 Identities=16% Similarity=0.251 Sum_probs=105.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCce--eEEEcCCcchhhhh-----hhccCCC-CcC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE--ARVNIPDERFEWLC-----QLFKPKS-AVP 87 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~--G~i~v~g~~~~~l~-----~~~~p~~-~~~ 87 (406)
.....+..|++++|+||||||||||+++|+|. ..|++ |.|.++|.++.... ..|.+|. ..+
T Consensus 23 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~ 91 (362)
T TIGR03258 23 DLSLEIEAGELLALIGKSGCGKTTLLRAIAGF-----------VKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALF 91 (362)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccC
Confidence 34456889999999999999999999999999 67889 99999987653221 1344444 233
Q ss_pred ceeEEEeeccccccccC-C-C---CCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchH
Q 015465 88 AFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~-~-~---~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~l 147 (406)
..+++.+...+...... . . .....+++.++..+ -.+.++++. .+|+++++| ||++.+
T Consensus 92 p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLD---EP~s~L 168 (362)
T TIGR03258 92 PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLD---EPLSAL 168 (362)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CccccC
Confidence 44555555443211100 0 0 00001111111100 014456666 799999999 999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH-HHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 148 EVISAELRLKDIEFMERRIEDV-EKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~-~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|....+.....+..+. +.. ...+ .-.+|+..++..++|++ .+|++|+++..++
T Consensus 169 D~~~r~~l~~~l~~l~---~~~~g~ti-l~vTHd~~ea~~l~dri-~vl~~G~i~~~g~ 222 (362)
T TIGR03258 169 DANIRANMREEIAALH---EELPELTI-LCVTHDQDDALTLADKA-GIMKDGRLAAHGE 222 (362)
T ss_pred CHHHHHHHHHHHHHHH---HhCCCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9988644433322111 111 1111 11249999999999999 9999999887664
No 121
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.37 E-value=1.8e-13 Score=130.78 Aligned_cols=170 Identities=16% Similarity=0.234 Sum_probs=101.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh------------------h-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------------------L- 76 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------------------l- 76 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.+.++|.++.. +
T Consensus 23 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (257)
T PRK10619 23 GVSLQANAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLR 91 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEcccccccccccccccchHHHHHh
Confidence 44556889999999999999999999999999 67899999999875421 0
Q ss_pred -hhhccCCCC-cCceeEEEeeccccc----cccC--CCCCcchhhhhHHhh---------------hchhhhhccc-CCC
Q 015465 77 -CQLFKPKSA-VPAFLEIHDIAGLVR----GAHE--GQGLGNSFLSHIRAV---------------DGIFHVLRAF-EDP 132 (406)
Q Consensus 77 -~~~~~p~~~-~~~~i~lvD~~gl~~----~~~~--~~~l~~~~l~~l~~a---------------d~ll~vvda~-~~~ 132 (406)
...|.||.. ....+++.|...+.. .... .......+++.+... .-.+.++++. .+|
T Consensus 92 ~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p 171 (257)
T PRK10619 92 TRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEP 171 (257)
T ss_pred hceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 113555542 222234444332210 0000 000000111111000 0114455665 799
Q ss_pred ceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 133 DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 133 ~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+++++| ||++++|....+.....+.. +.+....+ .-.+|+...+..+|+++ .+|++|+++..++
T Consensus 172 ~llllD---EPt~~LD~~~~~~l~~~l~~----l~~~g~ti-iivsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 235 (257)
T PRK10619 172 EVLLFD---EPTSALDPELVGEVLRIMQQ----LAEEGKTM-VVVTHEMGFARHVSSHV-IFLHQGKIEEEGA 235 (257)
T ss_pred CEEEEe---CCcccCCHHHHHHHHHHHHH----HHhcCCEE-EEEeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 999999 99999999986443322111 11101111 11139999999999999 8889998876554
No 122
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.37 E-value=4.7e-13 Score=127.19 Aligned_cols=170 Identities=16% Similarity=0.246 Sum_probs=99.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------------h--hhhc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------------L--CQLF 80 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------------l--~~~~ 80 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|+.|.|.++|.++.. + ...|
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 89 (250)
T PRK11264 21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL-----------EQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGF 89 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEccccccccchhhHHHHhhhhEEE
Confidence 34456889999999999999999999999999 67899999988865421 1 1135
Q ss_pred cCCCC-cCceeEEEeecccc----ccccCC--CCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeec
Q 015465 81 KPKSA-VPAFLEIHDIAGLV----RGAHEG--QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVD 138 (406)
Q Consensus 81 ~p~~~-~~~~i~lvD~~gl~----~~~~~~--~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld 138 (406)
.|+.. .....++.|...+. ...... ......+++.+... .-.+.+++++ .+|+++++|
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLD 169 (250)
T PRK11264 90 VFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFD 169 (250)
T ss_pred EecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 55542 22223444433221 000000 00000011100000 0014455555 789999999
Q ss_pred CCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 139 ~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|....+....-+..+ ......+ .-.+|+...+..+|+++ .+|++|++...++
T Consensus 170 ---EPt~~LD~~~~~~l~~~l~~~----~~~~~tv-i~~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 227 (250)
T PRK11264 170 ---EPTSALDPELVGEVLNTIRQL----AQEKRTM-VIVTHEMSFARDVADRA-IFMDQGRIVEQGP 227 (250)
T ss_pred ---CCCccCCHHHHHHHHHHHHHH----HhcCCEE-EEEeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 999999998864433322111 0001111 11139999999999999 8889998876543
No 123
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.36 E-value=1.9e-13 Score=130.54 Aligned_cols=170 Identities=20% Similarity=0.296 Sum_probs=101.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------hhhccCCCC-cC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPKSA-VP 87 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~~~~~p~~~-~~ 87 (406)
+....+.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++... ...|.|+.. ..
T Consensus 19 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (256)
T TIGR03873 19 GVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA-----------LRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTA 87 (256)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCCEEEECCEEcccCCHHHHhhheEEecccCccC
Confidence 44456889999999999999999999999999 679999999998765321 123556552 22
Q ss_pred ceeEEEeecccccccc---------CCCCCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCC
Q 015465 88 AFLEIHDIAGLVRGAH---------EGQGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~---------~~~~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP 143 (406)
...++.|...+..... ........++..+...+. .+.+++++ .+|+++++| ||
T Consensus 88 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EP 164 (256)
T TIGR03873 88 VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLD---EP 164 (256)
T ss_pred CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---Cc
Confidence 2334444332211000 000000011111111010 14455665 789999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++++|..........+..+ ......+ .-.+|+...+..+|+++ .+|.+|+++..++
T Consensus 165 t~~LD~~~~~~l~~~l~~~----~~~~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 220 (256)
T TIGR03873 165 TNHLDVRAQLETLALVREL----AATGVTV-VAALHDLNLAASYCDHV-VVLDGGRVVAAGP 220 (256)
T ss_pred cccCCHHHHHHHHHHHHHH----HhcCCEE-EEEeCCHHHHHHhCCEE-EEEeCCCEEEecC
Confidence 9999998754333222111 0001111 11139999999999999 8889999876654
No 124
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.36 E-value=2.9e-13 Score=135.24 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=102.5
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----------hhhccCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPKS 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~p~~ 84 (406)
+....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++... ...|.+|.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 84 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGL-----------TRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQD 84 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccccccccchhhCCEEEEcCC
Confidence 45566889999999999999999999999999 779999999988764321 11244444
Q ss_pred -CcCceeEEEeeccccccccCCCCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCchHH
Q 015465 85 -AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld 148 (406)
..+..+++.|...+..... .......+++.+... .-.+.++++. .+|+++++| ||++.+|
T Consensus 85 ~~l~~~~tv~enl~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD---EPts~LD 160 (352)
T PRK11144 85 ARLFPHYKVRGNLRYGMAKS-MVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD---EPLASLD 160 (352)
T ss_pred cccCCCCcHHHHHHhhhhhh-hHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCC
Confidence 2222334444332211000 000000111111100 0114455555 699999999 9999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
....+.....+..+. ......+ .-.+|+..++..+||++ .+|++|++...++
T Consensus 161 ~~~~~~l~~~L~~l~---~~~g~ti-i~vTHd~~~~~~~~d~i-~~l~~G~i~~~g~ 212 (352)
T PRK11144 161 LPRKRELLPYLERLA---REINIPI-LYVSHSLDEILRLADRV-VVLEQGKVKAFGP 212 (352)
T ss_pred HHHHHHHHHHHHHHH---HhcCCeE-EEEecCHHHHHHhCCEE-EEEeCCEEEEecC
Confidence 988654433322111 1101111 11239999999999999 8899998876654
No 125
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.36 E-value=3.4e-13 Score=126.24 Aligned_cols=162 Identities=18% Similarity=0.254 Sum_probs=95.8
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh--hhccCCCC-cC--ceeEEEe
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-VP--AFLEIHD 94 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~p~~~-~~--~~i~lvD 94 (406)
.+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.|+.. .. ..+++.|
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~ 70 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGL-----------IPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAH 70 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHH
Confidence 3678999999999999999999999999 6799999999997653221 24555542 11 1122333
Q ss_pred ecccccc--------cc-CCCCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHHH
Q 015465 95 IAGLVRG--------AH-EGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (406)
Q Consensus 95 ~~gl~~~--------~~-~~~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~i 150 (406)
...+... .. .........++.+...+ --+.++++. .+|+++++| ||++.+|..
T Consensus 71 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilD---EP~~~LD~~ 147 (223)
T TIGR03771 71 TVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLD---EPFTGLDMP 147 (223)
T ss_pred HHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHH
Confidence 2211100 00 00000000111110000 014455565 799999999 999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHH---HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 151 SAELRLKDIEFMERRIEDVEK---SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~---~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
..+.....+ ..+.+ .+.. .+|+...+..+|+++ .++ +|+++..++
T Consensus 148 ~~~~l~~~l-------~~~~~~~~tvii-~sH~~~~~~~~~d~i-~~l-~G~i~~~~~ 195 (223)
T TIGR03771 148 TQELLTELF-------IELAGAGTAILM-TTHDLAQAMATCDRV-VLL-NGRVIADGT 195 (223)
T ss_pred HHHHHHHHH-------HHHHHcCCEEEE-EeCCHHHHHHhCCEE-EEE-CCEEEeecC
Confidence 865443322 22211 1111 139999999999998 566 688776554
No 126
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.36 E-value=1.8e-12 Score=130.40 Aligned_cols=165 Identities=17% Similarity=0.208 Sum_probs=104.5
Q ss_pred CcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh------h--hccCCC
Q 015465 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------Q--LFKPKS 84 (406)
Q Consensus 13 ~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~--~~~p~~ 84 (406)
+.....-.+.+|++-+|+|.||||||||+++|.|. ..|++|.|.++|+.+..-+ . ...-|.
T Consensus 19 And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~-----------~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQH 87 (501)
T COG3845 19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL-----------YQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQH 87 (501)
T ss_pred ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc-----------ccCCcceEEECCEEeccCCHHHHHHcCCcEEeec
Confidence 45555667899999999999999999999999999 7899999999998753321 1 111122
Q ss_pred -CcCceeEEEeeccccccccCCCCCcc-hhhhhHH-hhh--------------------chhhhhccc-CCCceEeecCC
Q 015465 85 -AVPAFLEIHDIAGLVRGAHEGQGLGN-SFLSHIR-AVD--------------------GIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~~~~~~~~~l~~-~~l~~l~-~ad--------------------~ll~vvda~-~~~~il~ld~~ 140 (406)
.....+++.++.-+......+..+.. +..+.+. .++ --+.++.+. .+++++++|
T Consensus 88 F~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILD-- 165 (501)
T COG3845 88 FMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILD-- 165 (501)
T ss_pred cccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEc--
Confidence 22334555555444433221100000 0000000 000 013455555 799999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc-----ccchHHHHHHHHHHHHHhhCCCccc
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVR 202 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~-----~h~~~~v~~l~~~i~~~L~~g~~~~ 202 (406)
||++-+-+-+ +++.++.++.....+. +|.+.++.++||++ .+|..|+.+-
T Consensus 166 -EPTaVLTP~E----------~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrv-TVLR~Gkvvg 220 (501)
T COG3845 166 -EPTAVLTPQE----------ADELFEILRRLAAEGKTIIFITHKLKEVMAIADRV-TVLRRGKVVG 220 (501)
T ss_pred -CCcccCCHHH----------HHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCee-EEEeCCeEEe
Confidence 9998776665 3333444444433333 39999999999999 9999998764
No 127
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=7.3e-14 Score=141.23 Aligned_cols=172 Identities=19% Similarity=0.234 Sum_probs=104.6
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----------hhhccCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPK 83 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~p~ 83 (406)
.+....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++... ...|.+|
T Consensus 45 ~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl-----------~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q 113 (400)
T PRK10070 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL-----------IEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQ 113 (400)
T ss_pred EeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEEC
Confidence 344556889999999999999999999999999 789999999998765321 1235555
Q ss_pred C-CcCceeEEEeeccccccc---cCC--CCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCC
Q 015465 84 S-AVPAFLEIHDIAGLVRGA---HEG--QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 84 ~-~~~~~i~lvD~~gl~~~~---~~~--~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~d 142 (406)
. ..+..+++.|...+.... ... ......+++.+... .-.+.+++++ .+|+++++| |
T Consensus 114 ~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLD---E 190 (400)
T PRK10070 114 SFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMD---E 190 (400)
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEE---C
Confidence 5 233334444443322100 000 00000011111000 0014455665 699999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++.+|....+.....+..+. ......+.. .+|+..++..+|+++ .+|++|++...++
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~---~~~g~TIIi-vTHd~~~~~~~~Dri-~vL~~G~i~~~g~ 248 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQ---AKHQRTIVF-ISHDLDEAMRIGDRI-AIMQNGEVVQVGT 248 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHH---HHCCCeEEE-EECCHHHHHHhCCEE-EEEECCEEEecCC
Confidence 999999998654433322111 111111111 239999999999999 8899998876543
No 128
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.36 E-value=2.9e-13 Score=129.53 Aligned_cols=171 Identities=16% Similarity=0.263 Sum_probs=101.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----h--hhccCCC-CcC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKS-AVP 87 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~p~~-~~~ 87 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.++. ...
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (258)
T PRK13548 20 DVSLTLRPGEVVAILGPNGAGKSTLLRALSGE-----------LSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLS 88 (258)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCC
Confidence 33456889999999999999999999999999 679999999988754221 1 2355554 222
Q ss_pred ceeEEEeeccccccccCC-----CCCcchhhhhHHhhh--------------chhhhhcccC-------CCceEeecCCC
Q 015465 88 AFLEIHDIAGLVRGAHEG-----QGLGNSFLSHIRAVD--------------GIFHVLRAFE-------DPDIIHVDDSV 141 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~~-----~~l~~~~l~~l~~ad--------------~ll~vvda~~-------~~~il~ld~~~ 141 (406)
...++.|...+....... ......+++.+...+ -.+.+++++. +|+++++|
T Consensus 89 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLD--- 165 (258)
T PRK13548 89 FPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLD--- 165 (258)
T ss_pred CCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe---
Confidence 233444433221100000 000001111111000 0144555553 89999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|....+.....+..+.+ .-...+ .-.+|+...+..+|+++ ..|++|+++..++
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~---~~~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 224 (258)
T PRK13548 166 EPTSALDLAHQHHVLRLARQLAH---ERGLAV-IVVLHDLNLAARYADRI-VLLHQGRLVADGT 224 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH---hcCCEE-EEEECCHHHHHHhcCEE-EEEECCEEEeeCC
Confidence 99999999986544332221110 000111 11139999999999999 7889998876543
No 129
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=3.7e-13 Score=124.99 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=97.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh---------h--hhhccCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------L--CQLFKPKS 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~---------l--~~~~~p~~ 84 (406)
+..-.+.+ ++++|+|+||||||||+++|+|. ..|++|.+.++|.++.. . ...|.+|.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 83 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL-----------EKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEecccccchhhhhhHhhcEEEEecC
Confidence 55567889 99999999999999999999999 67999999998865421 1 11344544
Q ss_pred -CcCceeEEEeeccccccccC---CCCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCc
Q 015465 85 -AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~~~~~~---~~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
..+..+++.|...+...... .......+++.+...+ .-+.+++++ .+|+++++| ||++
T Consensus 84 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~ 160 (214)
T cd03297 84 YALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLD---EPFS 160 (214)
T ss_pred CccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcc
Confidence 22223344443322110000 0000011111111000 114455665 799999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccc
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~ 202 (406)
.+|....+.....+..+. +.....+ .-.+|+...+..+|+++ .+|++|++..
T Consensus 161 ~LD~~~~~~l~~~l~~~~---~~~~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~~ 212 (214)
T cd03297 161 ALDRALRLQLLPELKQIK---KNLNIPV-IFVTHDLSEAEYLADRI-VVMEDGRLQY 212 (214)
T ss_pred cCCHHHHHHHHHHHHHHH---HHcCcEE-EEEecCHHHHHHhcCEE-EEEECCEEEe
Confidence 999988644433221111 1001111 11239999999999998 7888887653
No 130
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2.2e-13 Score=128.10 Aligned_cols=171 Identities=13% Similarity=0.163 Sum_probs=101.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----hhhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~~~~~p~~-~~~~~ 89 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.|+. .....
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 85 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGF-----------LTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSH 85 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCeecCcCChhhccEEEEecccccccC
Confidence 55667889999999999999999999999999 678999999998764321 12344544 22222
Q ss_pred eEEEeecccccccc-C-C---CCCcchhhhhHHhh---h-----------chhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAH-E-G---QGLGNSFLSHIRAV---D-----------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~-~-~---~~l~~~~l~~l~~a---d-----------~ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+..... . . ......+++.+... + -.+.+++++ .+|+++++| ||+.++|.
T Consensus 86 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EP~~gLD~ 162 (232)
T PRK10771 86 LTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLD---EPFSALDP 162 (232)
T ss_pred CcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCH
Confidence 33333332211000 0 0 00000111111100 0 014455665 799999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
...+....-+..+ .......+.. .+|+...+..+|+++ ..|.+|++...++
T Consensus 163 ~~~~~~~~~l~~~---~~~~~~tiii-~sH~~~~~~~~~d~i-~~l~~g~i~~~g~ 213 (232)
T PRK10771 163 ALRQEMLTLVSQV---CQERQLTLLM-VSHSLEDAARIAPRS-LVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHHHH---HHhcCCEEEE-EECCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 8864332222111 0000011111 139999999999999 8888898876554
No 131
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2.6e-13 Score=130.31 Aligned_cols=170 Identities=14% Similarity=0.228 Sum_probs=100.3
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCC-CcCc
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS-AVPA 88 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~-~~~~ 88 (406)
....+.+|+++||+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.++. ....
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (265)
T PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH-----------QPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAE 98 (265)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCC
Confidence 3456789999999999999999999999999 6799999999987653211 2355554 2222
Q ss_pred eeEEEeeccccccccC-------C--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCC
Q 015465 89 FLEIHDIAGLVRGAHE-------G--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~-------~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
.+++.|...+...... . ......++..+...+ --+.+++++ .+|+++++| ||+
T Consensus 99 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD---EPt 175 (265)
T PRK10575 99 GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD---EPT 175 (265)
T ss_pred CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCc
Confidence 2333333222110000 0 000000111110000 014455555 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+++|....+....-+..+.+ .....+ .-.+|+...+..+|+++ .+|.+|++...++
T Consensus 176 ~~LD~~~~~~~~~~l~~l~~---~~~~ti-ii~sH~~~~i~~~~d~i-~~l~~G~i~~~~~ 231 (265)
T PRK10575 176 SALDIAHQVDVLALVHRLSQ---ERGLTV-IAVLHDINMAARYCDYL-VALRGGEMIAQGT 231 (265)
T ss_pred ccCCHHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCeEEEecC
Confidence 99999986443332211110 000111 11139999999999999 7889998876543
No 132
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=2.7e-13 Score=125.51 Aligned_cols=162 Identities=19% Similarity=0.257 Sum_probs=96.7
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----h--hhccCCCC-cCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPKSA-VPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~--~~~~p~~~-~~~~ 89 (406)
...++.+| +++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|.. ....
T Consensus 19 vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (211)
T cd03264 19 VSLTLGPG-MYGLLGPNGAGKTTLMRILATL-----------TPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPN 86 (211)
T ss_pred eeEEEcCC-cEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCCccccchHHHHhheEEecCCCccccc
Confidence 34567789 9999999999999999999999 779999999998765321 1 13555542 2222
Q ss_pred eEEEeeccccc---cccCC--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVR---GAHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~---~~~~~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+.. +.... ......+++.+...+ -.+.+++++ .+|+++++| ||++++|.
T Consensus 87 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~ 163 (211)
T cd03264 87 FTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD---EPTAGLDP 163 (211)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCH
Confidence 34444332211 00000 000001111111000 014456666 799999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCccc
Q 015465 150 ISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~ 202 (406)
...+....- +..+.+ .+ .-.+|+...+..+++++ .+|++|+++.
T Consensus 164 ~~~~~l~~~-------l~~~~~~~ti-i~vsH~~~~~~~~~d~i-~~l~~g~i~~ 209 (211)
T cd03264 164 EERIRFRNL-------LSELGEDRIV-ILSTHIVEDVESLCNQV-AVLNKGKLVF 209 (211)
T ss_pred HHHHHHHHH-------HHHHhCCCEE-EEEcCCHHHHHHhCCEE-EEEECCEEEe
Confidence 986443332 222211 11 11139999888999988 7788887653
No 133
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=2.9e-13 Score=131.29 Aligned_cols=172 Identities=15% Similarity=0.176 Sum_probs=102.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh-------hhh--hhccCCCC-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------WLC--QLFKPKSA- 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~-------~l~--~~~~p~~~- 85 (406)
.....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++. .+. ..|.|+..
T Consensus 24 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl-----------~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~ 92 (283)
T PRK13636 24 GININIKKGEVTAILGGNGAGKSTLFQNLNGI-----------LKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPD 92 (283)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcc
Confidence 44456889999999999999999999999999 7799999999997652 111 24555542
Q ss_pred -cCceeEEEeeccccccccC--CC---CCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCC
Q 015465 86 -VPAFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 86 -~~~~i~lvD~~gl~~~~~~--~~---~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
.....++.|...+...... .. ......++.+...+ --+.++++. .+|+++++| ||+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilD---EPt 169 (283)
T PRK13636 93 NQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLD---EPT 169 (283)
T ss_pred hhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCc
Confidence 1122344443322110000 00 00000001000000 013455555 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
+.+|....+.....+..+. ......+.. .+|++..+..+|+++ .+|++|+++..|+.
T Consensus 170 ~gLD~~~~~~l~~~l~~l~---~~~g~till-vsH~~~~~~~~~dri-~~l~~G~i~~~g~~ 226 (283)
T PRK13636 170 AGLDPMGVSEIMKLLVEMQ---KELGLTIII-ATHDIDIVPLYCDNV-FVMKEGRVILQGNP 226 (283)
T ss_pred cCCCHHHHHHHHHHHHHHH---HhCCCEEEE-EecCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 9999988644333221111 000111111 139999999999999 88899998877654
No 134
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.35 E-value=2.6e-13 Score=127.99 Aligned_cols=170 Identities=16% Similarity=0.198 Sum_probs=98.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------hhhccCCCC-cCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPKSA-VPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~~~~~p~~~-~~~ 88 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.||.. .+.
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~ 87 (236)
T TIGR03864 19 DVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL-----------YVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDL 87 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcc
Confidence 34456889999999999999999999999999 679999999988754321 123555542 223
Q ss_pred eeEEEeeccccccccC-----CCCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHH
Q 015465 89 FLEIHDIAGLVRGAHE-----GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~-----~~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld 148 (406)
..++.|...+...... .......+++.+...+ -.+.+++++ .+|+++++| ||++++|
T Consensus 88 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EP~~~LD 164 (236)
T TIGR03864 88 DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD---EPTVGLD 164 (236)
T ss_pred cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccCCC
Confidence 3344443322111000 0000001111110000 014455665 799999999 9999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
....+.....+..+.+ .....+ .-.+|+...+.. |+++ ..|++|+++..++
T Consensus 165 ~~~~~~l~~~l~~~~~---~~~~ti-ii~sH~~~~~~~-~d~i-~~l~~G~i~~~~~ 215 (236)
T TIGR03864 165 PASRAAIVAHVRALCR---DQGLSV-LWATHLVDEIEA-DDRL-VVLHRGRVLADGA 215 (236)
T ss_pred HHHHHHHHHHHHHHHH---hCCCEE-EEEecChhhHhh-CCEE-EEEeCCeEEEeCC
Confidence 9986443332211100 000111 111388888864 9998 7788898765543
No 135
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=5.6e-13 Score=126.11 Aligned_cols=167 Identities=18% Similarity=0.262 Sum_probs=99.2
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh-----------hh--hhhccC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-----------WL--CQLFKP 82 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~-----------~l--~~~~~p 82 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++. .. ...|.|
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (242)
T PRK11124 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLL-----------EMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVF 88 (242)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEecccccccchhhHHHHHhheEEEe
Confidence 34456789999999999999999999999999 6799999999987541 11 123555
Q ss_pred CCC-cCceeEEEeecccc----ccccCC--CCCcchhhhhHHh--------------hhchhhhhccc-CCCceEeecCC
Q 015465 83 KSA-VPAFLEIHDIAGLV----RGAHEG--QGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 83 ~~~-~~~~i~lvD~~gl~----~~~~~~--~~l~~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~ 140 (406)
|.. .+..+++.|..... .+.... ......+++.+.. -.-.+.+++++ .+|+++++|
T Consensus 89 q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilD-- 166 (242)
T PRK11124 89 QQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFD-- 166 (242)
T ss_pred cCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc--
Confidence 542 22223333322110 000000 0000000111000 00114466666 799999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHH---HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEK---SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~---~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|....+....- +..+.+ .+ .-.+|+...+..+|+++ .+|.+|++...++
T Consensus 167 -EPt~~LD~~~~~~l~~~-------l~~~~~~~~ti-i~~sh~~~~~~~~~d~i-~~l~~g~i~~~~~ 224 (242)
T PRK11124 167 -EPTAALDPEITAQIVSI-------IRELAETGITQ-VIVTHEVEVARKTASRV-VYMENGHIVEQGD 224 (242)
T ss_pred -CCCCcCCHHHHHHHHHH-------HHHHHHcCCEE-EEEeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 99999999875433322 222211 11 11139999998999998 8888898876543
No 136
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=2.7e-13 Score=128.37 Aligned_cols=171 Identities=18% Similarity=0.292 Sum_probs=101.4
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------hhhccCCC-Cc
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPKS-AV 86 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~~~~~p~~-~~ 86 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.|+. ..
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 86 (242)
T cd03295 18 NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL-----------IEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGL 86 (242)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCeEcCcCChHHhhcceEEEccCccc
Confidence 344567889999999999999999999999999 678999999988754321 11355554 22
Q ss_pred CceeEEEeeccccccccC-C----CCCcchhhhhHHhh-----h-----------chhhhhccc-CCCceEeecCCCCCC
Q 015465 87 PAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAV-----D-----------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~-~----~~l~~~~l~~l~~a-----d-----------~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
...+++.|...+...... . ......+++.+... + -.+.+++++ .+|+++++| ||+
T Consensus 87 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt 163 (242)
T cd03295 87 FPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD---EPF 163 (242)
T ss_pred cCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCc
Confidence 223444443322110000 0 00000111111000 0 014455665 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
+.+|....+.....+..+. ......+ .-.+|+...+..+|+++ ..|++|+++..+
T Consensus 164 ~~LD~~~~~~l~~~L~~~~---~~~g~tv-ii~sH~~~~~~~~~d~i-~~l~~G~i~~~~ 218 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQ---QELGKTI-VFVTHDIDEAFRLADRI-AIMKNGEIVQVG 218 (242)
T ss_pred ccCCHHHHHHHHHHHHHHH---HHcCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEec
Confidence 9999988644333221110 0000111 11139999899999999 788999887554
No 137
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.35 E-value=2.6e-12 Score=118.96 Aligned_cols=160 Identities=22% Similarity=0.339 Sum_probs=98.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh---hhc--------cCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---QLF--------KPKS 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~---~~~--------~p~~ 84 (406)
...-.+.+|+.+||+|++|||||||.++|+|+ .+|++|.|.++|.++.... ..+ .|..
T Consensus 25 ~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl-----------~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~ 93 (252)
T COG1124 25 NVSLEIERGETLGIVGESGSGKSTLARLLAGL-----------EKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYS 93 (252)
T ss_pred ceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc-----------cCCCCceEEECCcccCccccchhhccceeEEecCCcc
Confidence 34456889999999999999999999999999 7899999999996543211 000 1111
Q ss_pred CcCceeEE-----------------------Eeeccccc-----cccCCCCCcchhhhhHHhhhchhhhhccc-CCCceE
Q 015465 85 AVPAFLEI-----------------------HDIAGLVR-----GAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDII 135 (406)
Q Consensus 85 ~~~~~i~l-----------------------vD~~gl~~-----~~~~~~~l~~~~l~~l~~ad~ll~vvda~-~~~~il 135 (406)
.+++..++ .+-+|+.. .+++ .+-|. +++ +.++||. -+|+++
T Consensus 94 SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~e-LSGGQ--~QR-------iaIARAL~~~PklL 163 (252)
T COG1124 94 SLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHE-LSGGQ--RQR-------IAIARALIPEPKLL 163 (252)
T ss_pred ccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchh-cChhH--HHH-------HHHHHHhccCCCEE
Confidence 11111111 11111110 0000 00011 122 3455555 599999
Q ss_pred eecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 136 ~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
++| ||++.+|...+..++..+..+.+..+ + .. .-.+|++..+..+|||| .++++|.++..+
T Consensus 164 IlD---EptSaLD~siQa~IlnlL~~l~~~~~-l-t~--l~IsHdl~~v~~~cdRi-~Vm~~G~ivE~~ 224 (252)
T COG1124 164 ILD---EPTSALDVSVQAQILNLLLELKKERG-L-TY--LFISHDLALVEHMCDRI-AVMDNGQIVEIG 224 (252)
T ss_pred Eec---CchhhhcHHHHHHHHHHHHHHHHhcC-c-eE--EEEeCcHHHHHHHhhhe-eeeeCCeEEEee
Confidence 999 99999999987555444332222110 0 00 01139999999999999 999999887553
No 138
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=2.3e-13 Score=132.27 Aligned_cols=169 Identities=14% Similarity=0.116 Sum_probs=102.4
Q ss_pred cCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh---------hh--hhccC
Q 015465 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QLFKP 82 (406)
Q Consensus 14 ~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~---------l~--~~~~p 82 (406)
-.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. +. ..|.+
T Consensus 22 l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~ 90 (288)
T PRK13643 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL-----------LQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVF 90 (288)
T ss_pred eeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccccHHHHHhhEEEEe
Confidence 4456667889999999999999999999999999 78999999999976521 11 13445
Q ss_pred CCC--cCceeEEEeeccccccccC--CCCC---cchhhhhHHhh---------------hchhhhhccc-CCCceEeecC
Q 015465 83 KSA--VPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 83 ~~~--~~~~i~lvD~~gl~~~~~~--~~~l---~~~~l~~l~~a---------------d~ll~vvda~-~~~~il~ld~ 139 (406)
|.. .....++.|...+...... .... ...++..+... .-.+.+++++ .+|+++++|
T Consensus 91 q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLD- 169 (288)
T PRK13643 91 QFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLD- 169 (288)
T ss_pred cCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEE-
Confidence 432 1111233333322211000 0000 00001100100 0013455555 699999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHHH---HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEK---SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~---~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|+........- +..+.+ .+ .-.+|++..+..+|+++ .+|.+|+++..++
T Consensus 170 --EPt~gLD~~~~~~l~~~-------l~~l~~~g~ti-l~vtHd~~~~~~~~dri-~~l~~G~i~~~g~ 227 (288)
T PRK13643 170 --EPTAGLDPKARIEMMQL-------FESIHQSGQTV-VLVTHLMDDVADYADYV-YLLEKGHIISCGT 227 (288)
T ss_pred --CCccCCCHHHHHHHHHH-------HHHHHHCCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999999875433222 222211 11 11239999999999999 8899999887765
No 139
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.35 E-value=1.5e-13 Score=138.01 Aligned_cols=170 Identities=11% Similarity=0.162 Sum_probs=106.5
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCcee
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAFL 90 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~i 90 (406)
....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++..+. ..|.+|. ..+..+
T Consensus 33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~l 101 (375)
T PRK09452 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-----------ETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHM 101 (375)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCC
Confidence 4456789999999999999999999999999 6799999999998653321 2345554 334455
Q ss_pred EEEeeccccccccC-C-CC---CcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCchHHHH
Q 015465 91 EIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (406)
Q Consensus 91 ~lvD~~gl~~~~~~-~-~~---l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~~ld~i 150 (406)
++.|...+...... . .. .....++.++..+. .+.++++. .+|+++++| ||++.+|..
T Consensus 102 tv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLD---EP~s~LD~~ 178 (375)
T PRK09452 102 TVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD---ESLSALDYK 178 (375)
T ss_pred CHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCcCCHH
Confidence 66665543211100 0 00 00011111111110 14566666 799999999 999999998
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
..+.....+..+.+ .....+ .-.+|+..++..++|++ .+|.+|++...++
T Consensus 179 ~r~~l~~~L~~l~~---~~g~ti-I~vTHd~~ea~~laDri-~vl~~G~i~~~g~ 228 (375)
T PRK09452 179 LRKQMQNELKALQR---KLGITF-VFVTHDQEEALTMSDRI-VVMRDGRIEQDGT 228 (375)
T ss_pred HHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 86544333222111 111111 11249999999999999 9999999876554
No 140
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.35 E-value=6.7e-13 Score=122.14 Aligned_cols=157 Identities=20% Similarity=0.176 Sum_probs=94.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh--------hhccCCCC-c
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKSA-V 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--------~~~~p~~~-~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|.. +..|++|.+.++|.++.... ..|.|+.. .
T Consensus 18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~---------~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (200)
T cd03217 18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHP---------KYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPE 88 (200)
T ss_pred ccceEECCCcEEEEECCCCCCHHHHHHHHhCCC---------cCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhh
Confidence 444568899999999999999999999999982 02589999999987653221 12344431 1
Q ss_pred CceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHH
Q 015465 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRI 166 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l 166 (406)
+...++.+.. .......+.|+ .+++..+.+++ .+|+++++| ||++.+|....+....- +
T Consensus 89 ~~~~~~~~~l---~~~~~~LS~G~--~qrv~laral~------~~p~illlD---EPt~~LD~~~~~~l~~~-------L 147 (200)
T cd03217 89 IPGVKNADFL---RYVNEGFSGGE--KKRNEILQLLL------LEPDLAILD---EPDSGLDIDALRLVAEV-------I 147 (200)
T ss_pred ccCccHHHHH---hhccccCCHHH--HHHHHHHHHHh------cCCCEEEEe---CCCccCCHHHHHHHHHH-------H
Confidence 1111111111 00000111111 13333333333 599999999 99999999875333222 2
Q ss_pred HHHHH---HhhhccccchHHHHH-HHHHHHHHhhCCCccccC
Q 015465 167 EDVEK---SMKRSNDKQLKIEHE-LCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 167 ~~~~~---~~~~~~~h~~~~v~~-l~~~i~~~L~~g~~~~~~ 204 (406)
.++.+ .+.. .+|+...+.. +++++ ..|++|++...+
T Consensus 148 ~~~~~~~~tiii-~sh~~~~~~~~~~d~i-~~l~~G~i~~~~ 187 (200)
T cd03217 148 NKLREEGKSVLI-ITHYQRLLDYIKPDRV-HVLYDGRIVKSG 187 (200)
T ss_pred HHHHHCCCEEEE-EecCHHHHHHhhCCEE-EEEECCEEEEEc
Confidence 22211 1101 1388888877 79998 888889877654
No 141
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.35 E-value=5e-13 Score=128.29 Aligned_cols=171 Identities=20% Similarity=0.273 Sum_probs=101.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----------hhhccCCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLFKPKSA 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----------~~~~~p~~~ 85 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.||..
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 97 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGL-----------EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDS 97 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEccccCHHHHHHHhhceEEEecCh
Confidence 44456789999999999999999999999999 679999999998765321 123555542
Q ss_pred ---cCceeEEEeeccccc----cccC--CCCCcchhhhhHHhh---------------hchhhhhccc-CCCceEeecCC
Q 015465 86 ---VPAFLEIHDIAGLVR----GAHE--GQGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 86 ---~~~~i~lvD~~gl~~----~~~~--~~~l~~~~l~~l~~a---------------d~ll~vvda~-~~~~il~ld~~ 140 (406)
.+...++.|...+.. .... .......+++.+... .-.+.+++++ .+|+++++|
T Consensus 98 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLD-- 175 (265)
T TIGR02769 98 PSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLD-- 175 (265)
T ss_pred hhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 222233333322110 0000 000000111111100 0014455565 799999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|....+.....+..+. +.....+ .-.+|+...+..+|+++ .+|++|+++..++
T Consensus 176 -EPt~~LD~~~~~~l~~~l~~~~---~~~g~ti-iivsH~~~~~~~~~d~i-~~l~~G~i~~~g~ 234 (265)
T TIGR02769 176 -EAVSNLDMVLQAVILELLRKLQ---QAFGTAY-LFITHDLRLVQSFCQRV-AVMDKGQIVEECD 234 (265)
T ss_pred -CCcccCCHHHHHHHHHHHHHHH---HhcCcEE-EEEeCCHHHHHHHhcEE-EEEeCCEEEEECC
Confidence 9999999987644333221111 1001111 11239999999999999 8889998876554
No 142
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.35 E-value=3.1e-13 Score=128.71 Aligned_cols=171 Identities=16% Similarity=0.216 Sum_probs=99.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------------------h
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------------------C 77 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------------------~ 77 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... .
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 86 (252)
T TIGR03005 18 GLNFSVAAGEKVALIGPSGSGKSTILRILMTL-----------EPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMR 86 (252)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccccccccccccchhHHHHHh
Confidence 34456889999999999999999999999999 678999999988755321 1
Q ss_pred --hhccCCC-CcCceeEEEeeccccc----cccCC--CCCcchhhhhHHhh--------------hchhhhhccc-CCCc
Q 015465 78 --QLFKPKS-AVPAFLEIHDIAGLVR----GAHEG--QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPD 133 (406)
Q Consensus 78 --~~~~p~~-~~~~~i~lvD~~gl~~----~~~~~--~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~ 133 (406)
..|.++. ......++.|...+.. ..... ......+++.+... .-.+.+++++ .+|+
T Consensus 87 ~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 166 (252)
T TIGR03005 87 NKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPK 166 (252)
T ss_pred hCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCC
Confidence 1244443 2222233333332210 00000 00000011111000 0114455665 7999
Q ss_pred eEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 134 il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++++| ||++++|....+....-+..+ .+.....+ .-.+|+...+..+|+++ .+|++|+++..++
T Consensus 167 llllD---EP~~~LD~~~~~~l~~~l~~~---~~~~~~ti-iivsH~~~~~~~~~d~i-~~l~~G~i~~~g~ 230 (252)
T TIGR03005 167 VMLFD---EVTSALDPELVGEVLNVIRRL---ASEHDLTM-LLVTHEMGFAREFADRV-CFFDKGRIVEQGK 230 (252)
T ss_pred EEEEe---CCcccCCHHHHHHHHHHHHHH---HHhcCcEE-EEEeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 99999 999999998754332222111 11001111 11139999999999999 8889998876543
No 143
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=4.1e-13 Score=127.10 Aligned_cols=171 Identities=18% Similarity=0.199 Sum_probs=99.2
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------hhhccCCCCcC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPKSAVP 87 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~~~~~p~~~~~ 87 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.+|....
T Consensus 20 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~ 88 (241)
T PRK14250 20 KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL-----------IDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHL 88 (241)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchh
Confidence 345566889999999999999999999999999 679999999998765321 11344544211
Q ss_pred ceeEEEeecccccccc-CCCCCcchhhhhHHh---------------hhchhhhhccc-CCCceEeecCCCCCCchHHHH
Q 015465 88 AFLEIHDIAGLVRGAH-EGQGLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~-~~~~l~~~~l~~l~~---------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i 150 (406)
...++.+...+..... ........+++.+.. -.-.+.+++++ .+|+++++| ||++.+|..
T Consensus 89 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~ 165 (241)
T PRK14250 89 FEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLD---EPTSALDPT 165 (241)
T ss_pred chhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHH
Confidence 1122222221110000 000000001111100 00114455555 799999999 999999998
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
..+.....+..+. +.....+ .-.+|+...+..+|+++ ..|++|++...+
T Consensus 166 ~~~~l~~~l~~~~---~~~g~ti-i~~sH~~~~~~~~~d~i-~~l~~G~i~~~~ 214 (241)
T PRK14250 166 STEIIEELIVKLK---NKMNLTV-IWITHNMEQAKRIGDYT-AFLNKGILVEYA 214 (241)
T ss_pred HHHHHHHHHHHHH---HhCCCEE-EEEeccHHHHHHhCCEE-EEEeCCEEEEeC
Confidence 7644333221111 0001111 11239999999999999 788999877554
No 144
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.34 E-value=1e-12 Score=118.55 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=91.5
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh------hhccCCCCcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKSAVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~p~~~~~~~ 89 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.+.++|.++.... ..|.++......
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGD-----------LKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD 88 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec
Confidence 34566889999999999999999999999999 6789999999998654321 124444321111
Q ss_pred eEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHH
Q 015465 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDV 169 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~ 169 (406)
.++.|.. ....+.|++ +++..+.+++. +|+++++| ||++.+|....+.....+..+ .+
T Consensus 89 ~tv~~~i------~~~LS~G~~--qrv~laral~~------~p~~lllD---EP~~~LD~~~~~~l~~~l~~~----~~- 146 (178)
T cd03247 89 TTLRNNL------GRRFSGGER--QRLALARILLQ------DAPIVLLD---EPTVGLDPITERQLLSLIFEV----LK- 146 (178)
T ss_pred ccHHHhh------cccCCHHHH--HHHHHHHHHhc------CCCEEEEE---CCcccCCHHHHHHHHHHHHHH----cC-
Confidence 1222211 111111222 44444444444 99999999 999999998764433322111 00
Q ss_pred HHHhhhccccchHHHHHHHHHHHHHhhCCCcc
Q 015465 170 EKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (406)
Q Consensus 170 ~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~ 201 (406)
...+ .-.+|+...+. .|+++ ..|.+|++.
T Consensus 147 ~~ti-i~~sh~~~~~~-~~d~~-~~l~~g~i~ 175 (178)
T cd03247 147 DKTL-IWITHHLTGIE-HMDKI-LFLENGKII 175 (178)
T ss_pred CCEE-EEEecCHHHHH-hCCEE-EEEECCEEE
Confidence 0111 01138887765 57877 667777654
No 145
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.34 E-value=5.1e-12 Score=131.71 Aligned_cols=86 Identities=35% Similarity=0.504 Sum_probs=65.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc--
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA-- 102 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~-- 102 (406)
..++++|.||+|||||||+|||.+..++|+|+.|.+...|.....|.+ ++++|+||...-.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~-----------------i~ivDLPG~YSL~~~ 66 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE-----------------IEIVDLPGTYSLTAY 66 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce-----------------EEEEeCCCcCCCCCC
Confidence 359999999999999999999999999999999999999999998864 8999999987422
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+.++.....++. -...|++++|+||
T Consensus 67 S~DE~Var~~ll-~~~~D~ivnVvDA 91 (653)
T COG0370 67 SEDEKVARDFLL-EGKPDLIVNVVDA 91 (653)
T ss_pred CchHHHHHHHHh-cCCCCEEEEEccc
Confidence 222222222221 1335666666655
No 146
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=3.7e-13 Score=130.75 Aligned_cols=173 Identities=14% Similarity=0.132 Sum_probs=103.3
Q ss_pred cCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------h--hhccCCC
Q 015465 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QLFKPKS 84 (406)
Q Consensus 14 ~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~--~~~~p~~ 84 (406)
-.+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~ 91 (287)
T PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL-----------LKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQY 91 (287)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCccEEEECCEECCCcCccHHHHhhceEEEecC
Confidence 3344567889999999999999999999999999 789999999999765321 1 1455654
Q ss_pred C--cCceeEEEeeccccccccC--CCCC---cchhhhhHHhh----------------hchhhhhccc-CCCceEeecCC
Q 015465 85 A--VPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRAV----------------DGIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 85 ~--~~~~i~lvD~~gl~~~~~~--~~~l---~~~~l~~l~~a----------------d~ll~vvda~-~~~~il~ld~~ 140 (406)
. .....++.|...+...... .... ....++.+... .-.+.+++|. .+|+++++|
T Consensus 92 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllD-- 169 (287)
T PRK13637 92 PEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILD-- 169 (287)
T ss_pred chhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEE--
Confidence 2 1112334443322110000 0000 00011110000 0013455555 699999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|+........-+..+.+ .....+ .-.+|++..+..+||++ .+|.+|++...++
T Consensus 170 -EPt~gLD~~~~~~l~~~l~~l~~---~~g~tv-i~vtHd~~~~~~~~drv-~~l~~G~i~~~g~ 228 (287)
T PRK13637 170 -EPTAGLDPKGRDEILNKIKELHK---EYNMTI-ILVSHSMEDVAKLADRI-IVMNKGKCELQGT 228 (287)
T ss_pred -CCccCCCHHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999999886443332221111 001111 11239999999999999 8889999887654
No 147
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.34 E-value=3.5e-13 Score=129.38 Aligned_cols=171 Identities=17% Similarity=0.222 Sum_probs=100.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------hhhccCCCC-cC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPKSA-VP 87 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~~~~~p~~~-~~ 87 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|+.|.|.++|.++... ...|.++.. .+
T Consensus 25 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 93 (265)
T PRK10253 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL-----------MTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTP 93 (265)
T ss_pred ecceEECCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCC
Confidence 34456889999999999999999999999999 678999999998765321 123555542 22
Q ss_pred ceeEEEeeccccccccC------CC---CCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCC
Q 015465 88 AFLEIHDIAGLVRGAHE------GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~------~~---~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP 143 (406)
...++.|...+...... .. .....+++.+...+ --+.+++++ .+|+++++| ||
T Consensus 94 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD---EP 170 (265)
T PRK10253 94 GDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD---EP 170 (265)
T ss_pred CCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEe---Cc
Confidence 22333333221100000 00 00000111110000 014455665 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++++|....+.....+..+.+ .....+ .-.+|+...+.++|+++ ..|++|+++..++
T Consensus 171 t~gLD~~~~~~l~~~L~~l~~---~~~~ti-ii~tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 227 (265)
T PRK10253 171 TTWLDISHQIDLLELLSELNR---EKGYTL-AAVLHDLNQACRYASHL-IALREGKIVAQGA 227 (265)
T ss_pred cccCCHHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999886443332211110 000011 11139999999999999 8889998876554
No 148
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=3.1e-13 Score=127.14 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=96.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----------hhhccCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPKS 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~p~~ 84 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.+|.
T Consensus 27 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~ 95 (233)
T PRK11629 27 NVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL-----------DTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQF 95 (233)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecC
Confidence 34456889999999999999999999999999 679999999998765321 12355554
Q ss_pred -CcCceeEEEeeccccc---cccCC--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCC
Q 015465 85 -AVPAFLEIHDIAGLVR---GAHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~~---~~~~~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP 143 (406)
..+..+++.|...+.. ..... ......+++.+...+ -.+.+++++ .+|+++++| ||
T Consensus 96 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD---EP 172 (233)
T PRK11629 96 HHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLAD---EP 172 (233)
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CC
Confidence 2222234444332210 00000 000001111111000 113455555 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
++++|....+.....+..+. ..-...+.. .+|+...+..+ +++ .+|.+|+++..+
T Consensus 173 t~~LD~~~~~~l~~~l~~~~---~~~g~tvii-~sH~~~~~~~~-~~~-~~l~~G~i~~~~ 227 (233)
T PRK11629 173 TGNLDARNADSIFQLLGELN---RLQGTAFLV-VTHDLQLAKRM-SRQ-LEMRDGRLTAEL 227 (233)
T ss_pred CCCCCHHHHHHHHHHHHHHH---HhCCCEEEE-EeCCHHHHHhh-CEE-EEEECCEEEEEe
Confidence 99999988644333221110 000011101 13888887765 576 578888876543
No 149
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.34 E-value=8.5e-13 Score=115.23 Aligned_cols=128 Identities=20% Similarity=0.310 Sum_probs=84.1
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEe
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD 94 (406)
.+....+.+|++++|+|+||+|||||+++|+|. .+|++|.|.++|.. .+.++.
T Consensus 17 ~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~~~~----------------~i~~~~ 69 (144)
T cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE-----------LEPDEGIVTWGSTV----------------KIGYFE 69 (144)
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCceEEEECCeE----------------EEEEEc
Confidence 344456889999999999999999999999999 67999999998741 011111
Q ss_pred eccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 015465 95 IAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK 174 (406)
Q Consensus 95 ~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~ 174 (406)
. .+.+++ +++..+-+++. +|+++++| ||++.+|....+....-+ ..+...+
T Consensus 70 ~----------lS~G~~--~rv~laral~~------~p~illlD---EP~~~LD~~~~~~l~~~l-------~~~~~ti- 120 (144)
T cd03221 70 Q----------LSGGEK--MRLALAKLLLE------NPNLLLLD---EPTNHLDLESIEALEEAL-------KEYPGTV- 120 (144)
T ss_pred c----------CCHHHH--HHHHHHHHHhc------CCCEEEEe---CCccCCCHHHHHHHHHHH-------HHcCCEE-
Confidence 0 111222 44444444444 99999999 999999998754332221 1111111
Q ss_pred hccccchHHHHHHHHHHHHHhhCCC
Q 015465 175 RSNDKQLKIEHELCQRVKAWLQDGK 199 (406)
Q Consensus 175 ~~~~h~~~~v~~l~~~i~~~L~~g~ 199 (406)
.-.+|+...+..+|+++ ..|++|+
T Consensus 121 l~~th~~~~~~~~~d~v-~~l~~g~ 144 (144)
T cd03221 121 ILVSHDRYFLDQVATKI-IELEDGK 144 (144)
T ss_pred EEEECCHHHHHHhCCEE-EEEeCCC
Confidence 11238888888888887 5555553
No 150
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=8.9e-13 Score=118.27 Aligned_cols=144 Identities=22% Similarity=0.302 Sum_probs=85.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+....+.+|+.++|+|+||||||||+++|+|. ..|++|.+.++|.++.... ..|.++.....
T Consensus 20 ~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~ 88 (171)
T cd03228 20 DVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL-----------YDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLF 88 (171)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhc
Confidence 44456889999999999999999999999999 6789999999987653221 12333321100
Q ss_pred eeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHH
Q 015465 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIED 168 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~ 168 (406)
..++.|.. .+.|++ +++..+.+++ .+|+++++| ||++++|....+.....+..+ ..
T Consensus 89 ~~t~~e~l---------LS~G~~--~rl~la~al~------~~p~llllD---EP~~gLD~~~~~~l~~~l~~~----~~ 144 (171)
T cd03228 89 SGTIRENI---------LSGGQR--QRIAIARALL------RDPPILILD---EATSALDPETEALILEALRAL----AK 144 (171)
T ss_pred cchHHHHh---------hCHHHH--HHHHHHHHHh------cCCCEEEEE---CCCcCCCHHHHHHHHHHHHHh----cC
Confidence 01111111 111222 3333343333 499999999 999999998754332222111 00
Q ss_pred HHHHhhhccccchHHHHHHHHHHHHHhhCC
Q 015465 169 VEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (406)
Q Consensus 169 ~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g 198 (406)
...+.. .+|+...+.. |+++ ..|.+|
T Consensus 145 -~~tii~-~sh~~~~~~~-~d~~-~~l~~g 170 (171)
T cd03228 145 -GKTVIV-IAHRLSTIRD-ADRI-IVLDDG 170 (171)
T ss_pred -CCEEEE-EecCHHHHHh-CCEE-EEEcCC
Confidence 011111 1388877766 7776 445444
No 151
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.34 E-value=6.7e-13 Score=138.96 Aligned_cols=171 Identities=17% Similarity=0.203 Sum_probs=101.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------hhhccCCC-Cc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKS-AV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~p~~-~~ 86 (406)
+....+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++... ...|.+|. ..
T Consensus 29 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (510)
T PRK15439 29 GIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI-----------VPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLL 97 (510)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCcc
Confidence 44556789999999999999999999999999 779999999998654221 12355554 22
Q ss_pred CceeEEEeeccccccccCC-CCCcchhhhhHHh--------------hhchhhhhccc-CCCceEeecCCCCCCchHHHH
Q 015465 87 PAFLEIHDIAGLVRGAHEG-QGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~~-~~l~~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i 150 (406)
...+++.|...+....... ......++..+.. -.-.+.+++++ .+|+++++| ||++.+|+.
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLD---EPt~~LD~~ 174 (510)
T PRK15439 98 FPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD---EPTASLTPA 174 (510)
T ss_pred CCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCCCCCCHH
Confidence 2233333332221100000 0000000000000 00113455555 699999999 999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
..+.....+..+ ..-...+ .-.+|+...+..+|+++ .+|.+|+++..++.
T Consensus 175 ~~~~l~~~l~~~----~~~g~ti-iivtHd~~~~~~~~d~i-~~l~~G~i~~~g~~ 224 (510)
T PRK15439 175 ETERLFSRIREL----LAQGVGI-VFISHKLPEIRQLADRI-SVMRDGTIALSGKT 224 (510)
T ss_pred HHHHHHHHHHHH----HHCCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEecCh
Confidence 864443322111 0001111 11239999999999999 88999998766543
No 152
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.33 E-value=4.2e-13 Score=125.07 Aligned_cols=165 Identities=18% Similarity=0.203 Sum_probs=94.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----------hhhccCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPKS 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~p~~ 84 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.+.++|.++... ...|.+|.
T Consensus 23 ~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 91 (221)
T TIGR02211 23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL-----------DNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQF 91 (221)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecc
Confidence 34456889999999999999999999999999 679999999998765321 12355555
Q ss_pred -CcCceeEEEeecccccc---ccCC--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCC
Q 015465 85 -AVPAFLEIHDIAGLVRG---AHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~~~---~~~~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP 143 (406)
..+...++.|...+... .... ......+++.+...+ -.+.+++++ .+|+++++| ||
T Consensus 92 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD---EP 168 (221)
T TIGR02211 92 HHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLAD---EP 168 (221)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe---CC
Confidence 23323444444332110 0000 000001111110000 114455555 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCc
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~ 200 (406)
++.+|....+.....+..+.+ .....+ .-.+|+...+.. ||++ ..|.+|++
T Consensus 169 t~~LD~~~~~~l~~~l~~~~~---~~~~ti-i~~tH~~~~~~~-~d~v-~~l~~G~i 219 (221)
T TIGR02211 169 TGNLDNNNAKIIFDLMLELNR---ELNTSF-LVVTHDLELAKK-LDRV-LEMKDGQL 219 (221)
T ss_pred CCcCCHHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHhh-cCEE-EEEeCCEe
Confidence 999999986444332211100 000111 111388877654 6777 66676654
No 153
>PRK00089 era GTPase Era; Reviewed
Probab=99.33 E-value=1e-12 Score=127.83 Aligned_cols=189 Identities=22% Similarity=0.263 Sum_probs=115.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..|+|+|+||||||||+|.|+|....+ ++.|.||.....|....++ .++.++||||+.....
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~-----------------~qi~~iDTPG~~~~~~ 68 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD-----------------AQIIFVDTPGIHKPKR 68 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC-----------------ceEEEEECCCCCCchh
Confidence 478999999999999999999998754 8889999887777666443 2589999999875432
Q ss_pred C-CCCCcchhhhhHHhhhchhhhhcccCCCc---eEe---ecCCCCCC----chHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 015465 104 E-GQGLGNSFLSHIRAVDGIFHVLRAFEDPD---IIH---VDDSVDPV----RDLEVISAELRLKDIEFMERRIEDVEKS 172 (406)
Q Consensus 104 ~-~~~l~~~~l~~l~~ad~ll~vvda~~~~~---il~---ld~~~dP~----~~ld~i~~el~~~di~~l~k~l~~~~~~ 172 (406)
. +..+.......+..+|++++|+|+..... ..+ +.....|. +.+|... +...+...++.+.+.
T Consensus 69 ~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~------~~~~l~~~~~~l~~~ 142 (292)
T PRK00089 69 ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVK------DKEELLPLLEELSEL 142 (292)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCC------CHHHHHHHHHHHHhh
Confidence 1 11122233455678999999998864110 000 00000111 1122210 001111112222211
Q ss_pred ------hhhccccchHHHHHHHHHHHHHhhCCCcccc-CCCChhH-----HHHHHHh-hhhccccEEeeeccchhhhh
Q 015465 173 ------MKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDYQ 237 (406)
Q Consensus 173 ------~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~-~~~t~~e-----~e~i~~~-~~~~~kpi~~~~N~~~~~~~ 237 (406)
+..+ +....++..+++.+...++.|..+++ +..++.. .|++|+. +....++++|.+.+..+.+.
T Consensus 143 ~~~~~i~~iS-A~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~ 219 (292)
T PRK00089 143 MDFAEIVPIS-ALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFE 219 (292)
T ss_pred CCCCeEEEec-CCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEE
Confidence 1112 25566788899999889998887766 4455543 2677877 66778999999987766553
No 154
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=2.1e-13 Score=137.15 Aligned_cols=171 Identities=13% Similarity=0.199 Sum_probs=107.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
.....+.+|++++|+||||||||||+++|+|. ..|+.|.|.++|..+..+. ..|.+|. ..+..
T Consensus 37 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ 105 (377)
T PRK11607 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGF-----------EQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPH 105 (377)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCC
Confidence 34556789999999999999999999999999 6799999999997653321 2355555 34445
Q ss_pred eEEEeeccccccccC--CCCCcch---hhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAHE--GQGLGNS---FLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~~--~~~l~~~---~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+...... ......+ .++.+...+ --+.+.++. .+|+++++| ||++.+|.
T Consensus 106 ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLD---EP~s~LD~ 182 (377)
T PRK11607 106 MTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD---EPMGALDK 182 (377)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCH
Confidence 566665544311110 0000000 111111000 014456666 799999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
...+.....+..+.+ .....+ .-.+|+..++..++|++ .+|.+|++...++
T Consensus 183 ~~r~~l~~~l~~l~~---~~g~ti-i~vTHd~~ea~~laDri-~vl~~G~i~~~g~ 233 (377)
T PRK11607 183 KLRDRMQLEVVDILE---RVGVTC-VMVTHDQEEAMTMAGRI-AIMNRGKFVQIGE 233 (377)
T ss_pred HHHHHHHHHHHHHHH---hcCCEE-EEEcCCHHHHHHhCCEE-EEEeCCEEEEEcC
Confidence 886544333222211 111111 11239999999999999 8899999876654
No 155
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=3.2e-13 Score=130.67 Aligned_cols=170 Identities=16% Similarity=0.108 Sum_probs=100.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCC--c
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSA--V 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~--~ 86 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|.. .
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 93 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL-----------LEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQ 93 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHh
Confidence 44466889999999999999999999999999 7899999999997653211 13555542 1
Q ss_pred CceeEEEeeccccccccC--CC---CCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCch
Q 015465 87 PAFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~--~~---~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ 146 (406)
....++.|...+...... .. ......++.+...+ -.+.+++++ .+|+++++| ||++.
T Consensus 94 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD---EPt~~ 170 (279)
T PRK13650 94 FVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD---EATSM 170 (279)
T ss_pred cccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CCccc
Confidence 222344443322210000 00 00000111110000 114455666 799999999 99999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+|..........+..+.+ .....+ .-.+|++..+ ..|+++ .+|.+|++...++
T Consensus 171 LD~~~~~~l~~~l~~l~~---~~g~ti-livtH~~~~~-~~~dri-~~l~~G~i~~~g~ 223 (279)
T PRK13650 171 LDPEGRLELIKTIKGIRD---DYQMTV-ISITHDLDEV-ALSDRV-LVMKNGQVESTST 223 (279)
T ss_pred CCHHHHHHHHHHHHHHHH---hcCCEE-EEEecCHHHH-HhCCEE-EEEECCEEEEECC
Confidence 999886443332211110 001111 1113998887 579999 8889999876654
No 156
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.33 E-value=1e-12 Score=121.85 Aligned_cols=165 Identities=18% Similarity=0.254 Sum_probs=96.7
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh------hhh--hccC---C
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ--LFKP---K 83 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------l~~--~~~p---~ 83 (406)
.++.|.|++|++++|+||||||||||+++++|. ..|.+|.+.+.|.++.. +.. ++.+ .
T Consensus 48 ~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~-----------~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~ 116 (257)
T COG1119 48 GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE-----------HPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELH 116 (257)
T ss_pred cccceeecCCCcEEEECCCCCCHHHHHHHHhcc-----------cCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHH
Confidence 356788999999999999999999999999999 56778888887776422 111 1111 0
Q ss_pred CCcCceeEEE--------eeccccccccCCC---------------CCcchhhhhHHh-hhchhhhhccc-CCCceEeec
Q 015465 84 SAVPAFLEIH--------DIAGLVRGAHEGQ---------------GLGNSFLSHIRA-VDGIFHVLRAF-EDPDIIHVD 138 (406)
Q Consensus 84 ~~~~~~i~lv--------D~~gl~~~~~~~~---------------~l~~~~l~~l~~-ad~ll~vvda~-~~~~il~ld 138 (406)
...+....+. ++.|+........ .+..+....+.. -.-.+.++||. .+|.+++||
T Consensus 117 ~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLD 196 (257)
T COG1119 117 ERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196 (257)
T ss_pred hhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEec
Confidence 1111122222 3333332111100 000011111110 11235677877 899999999
Q ss_pred CCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhh--c-----cccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR--S-----NDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 139 ~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~--~-----~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
||+.++|....+.. ++.+...... + .+|..+++..-.+++ -.|.+|+++..+
T Consensus 197 ---EP~~GLDl~~re~l----------l~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~-lll~~g~v~~~g 255 (257)
T COG1119 197 ---EPAQGLDLIAREQL----------LNRLEELAASPGAPALLFVTHHAEEIPPCFTHR-LLLKEGEVVAQG 255 (257)
T ss_pred ---CccccCChHHHHHH----------HHHHHHHhcCCCCceEEEEEcchhhcccccceE-EEeeCCceeecc
Confidence 99999999996433 2333322211 1 138777777777776 666777766543
No 157
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=1.2e-12 Score=119.63 Aligned_cols=157 Identities=15% Similarity=0.189 Sum_probs=92.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-hh--hhccCCC-CcCceeE
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-LC--QLFKPKS-AVPAFLE 91 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-l~--~~~~p~~-~~~~~i~ 91 (406)
+....+.+|++++|+|+||||||||+++|+|... ..|+.|.+.++|.++.. +. ..|.+|. .....++
T Consensus 25 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---------~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~t 95 (192)
T cd03232 25 NISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT---------AGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLT 95 (192)
T ss_pred ccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc---------CCCcceEEEECCEehHHHhhhceEEecccCccccCCc
Confidence 3445788999999999999999999999999721 24789999999876531 11 1234443 2222233
Q ss_pred EEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHH
Q 015465 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK 171 (406)
Q Consensus 92 lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~ 171 (406)
+.|...+..... ..+.|++ +++..+.+++ .+|+++++| ||++.+|....+..... +..+.+
T Consensus 96 v~~~l~~~~~~~-~LSgGe~--qrv~la~al~------~~p~vlllD---EP~~~LD~~~~~~l~~~-------l~~~~~ 156 (192)
T cd03232 96 VREALRFSALLR-GLSVEQR--KRLTIGVELA------AKPSILFLD---EPTSGLDSQAAYNIVRF-------LKKLAD 156 (192)
T ss_pred HHHHHHHHHHHh-cCCHHHh--HHHHHHHHHh------cCCcEEEEe---CCCcCCCHHHHHHHHHH-------HHHHHH
Confidence 333322211000 1111111 3333333333 499999999 99999999886443332 222211
Q ss_pred ---HhhhccccchH-HHHHHHHHHHHHhhC-CCccc
Q 015465 172 ---SMKRSNDKQLK-IEHELCQRVKAWLQD-GKDVR 202 (406)
Q Consensus 172 ---~~~~~~~h~~~-~v~~l~~~i~~~L~~-g~~~~ 202 (406)
.+ .-.+|+.. .+...||++ ..|++ |++++
T Consensus 157 ~~~ti-iivtH~~~~~~~~~~d~i-~~l~~~g~i~~ 190 (192)
T cd03232 157 SGQAI-LCTIHQPSASIFEKFDRL-LLLKRGGKTVY 190 (192)
T ss_pred cCCEE-EEEEcCChHHHHhhCCEE-EEEcCCCeEEe
Confidence 11 11138877 467888988 67777 77654
No 158
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=5.1e-13 Score=129.27 Aligned_cols=171 Identities=13% Similarity=0.085 Sum_probs=100.9
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh---------hh--hhccCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QLFKPK 83 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~---------l~--~~~~p~ 83 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. +. ..|.||
T Consensus 24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q 92 (280)
T PRK13649 24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL-----------HVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQ 92 (280)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccccccCHHHHHhheEEEee
Confidence 344556889999999999999999999999999 77999999999876432 11 235555
Q ss_pred CC--cCceeEEEeecccccccc--CCCC---CcchhhhhHHh---------------hhchhhhhccc-CCCceEeecCC
Q 015465 84 SA--VPAFLEIHDIAGLVRGAH--EGQG---LGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 84 ~~--~~~~i~lvD~~gl~~~~~--~~~~---l~~~~l~~l~~---------------ad~ll~vvda~-~~~~il~ld~~ 140 (406)
.. .....++.|...+..... .... ....+++.+.. -.-.+.+++++ .+|+++++|
T Consensus 93 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD-- 170 (280)
T PRK13649 93 FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLD-- 170 (280)
T ss_pred ChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe--
Confidence 42 111123333322211000 0000 00000010000 00114455665 789999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|....+.....+..+ .+-...+.. .+|+...+..+|+++ .+|.+|+++..++
T Consensus 171 -EPt~~LD~~~~~~l~~~l~~~----~~~~~tiii-vsH~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (280)
T PRK13649 171 -EPTAGLDPKGRKELMTLFKKL----HQSGMTIVL-VTHLMDDVANYADFV-YVLEKGKLVLSGK 228 (280)
T ss_pred -CCcccCCHHHHHHHHHHHHHH----HHCCCEEEE-EeccHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999998864443322111 100111111 239999999999999 8889998876554
No 159
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.32 E-value=4.8e-13 Score=125.35 Aligned_cols=166 Identities=18% Similarity=0.238 Sum_probs=93.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----------hhhccCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPKS 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~p~~ 84 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.++.
T Consensus 28 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 96 (228)
T PRK10584 28 GVELVVKRGETIALIGESGSGKSTLLAILAGL-----------DDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQS 96 (228)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcc
Confidence 34456789999999999999999999999999 779999999988754321 12344544
Q ss_pred -CcCceeEEEeecccc---ccccCC--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCC
Q 015465 85 -AVPAFLEIHDIAGLV---RGAHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~---~~~~~~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.....+++.|...+. ...... ......+++.+...+ -.+.+++++ .+|+++++| ||
T Consensus 97 ~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllD---EP 173 (228)
T PRK10584 97 FMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFAD---EP 173 (228)
T ss_pred cccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CC
Confidence 222223333332221 000000 000001111111000 114455665 789999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~ 201 (406)
++++|....+.....+..+. ......+.. .+|+...+. .|+++ ..|.+|++.
T Consensus 174 t~~LD~~~~~~l~~~l~~~~---~~~~~tii~-~sH~~~~~~-~~d~i-~~l~~g~i~ 225 (228)
T PRK10584 174 TGNLDRQTGDKIADLLFSLN---REHGTTLIL-VTHDLQLAA-RCDRR-LRLVNGQLQ 225 (228)
T ss_pred CCCCCHHHHHHHHHHHHHHH---HhcCCEEEE-EecCHHHHH-hCCEE-EEEECCEEE
Confidence 99999988644333221111 000111111 138887764 48877 667777653
No 160
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.32 E-value=9.6e-13 Score=123.26 Aligned_cols=159 Identities=20% Similarity=0.238 Sum_probs=90.1
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh--hccCCCCcCceeEEEee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--LFKPKSAVPAFLEIHDI 95 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~--~~~p~~~~~~~i~lvD~ 95 (406)
.-.+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|..+..... .+.|. +++.|.
T Consensus 42 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~------~tv~en 104 (224)
T cd03220 42 SFEVPRGERIGLIGRNGAGKSTLLRLLAGI-----------YPPDSGTVTVRGRVSSLLGLGGGFNPE------LTGREN 104 (224)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEchhhcccccCCCC------CcHHHH
Confidence 346789999999999999999999999999 67999999998875432211 12221 111121
Q ss_pred ccccc---cccCC------------CCCcc---hhhhhHH-hhhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHh
Q 015465 96 AGLVR---GAHEG------------QGLGN---SFLSHIR-AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELR 155 (406)
Q Consensus 96 ~gl~~---~~~~~------------~~l~~---~~l~~l~-~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~ 155 (406)
..+.. +.... .++.. +....+. ...--+.+++++ .+|+++++| ||++.+|.......
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EP~~gLD~~~~~~~ 181 (224)
T cd03220 105 IYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID---EVLAVGDAAFQEKC 181 (224)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence 11100 00000 00000 0000000 000113455555 699999999 99999999875433
Q ss_pred hhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccc
Q 015465 156 LKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (406)
Q Consensus 156 ~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~ 202 (406)
...+..+ ... ...+ .-.+|+...+..+|+++ ..|.+|+++.
T Consensus 182 ~~~l~~~---~~~-~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~~ 222 (224)
T cd03220 182 QRRLREL---LKQ-GKTV-ILVSHDPSSIKRLCDRA-LVLEKGKIRF 222 (224)
T ss_pred HHHHHHH---HhC-CCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEe
Confidence 2222111 000 0111 11139998888999988 7778887653
No 161
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=8.6e-13 Score=127.11 Aligned_cols=171 Identities=18% Similarity=0.232 Sum_probs=98.8
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------h--hhhccCCCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------L--CQLFKPKSA 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l--~~~~~p~~~ 85 (406)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. . ...|.||..
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 86 (271)
T PRK13638 18 KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL-----------LRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDP 86 (271)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCccEEEECCEEcccccCCHHHHHhheEEEeeCh
Confidence 344566889999999999999999999999999 77999999999876521 1 123555542
Q ss_pred c--CceeEEEeecccc---ccccCC--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCC
Q 015465 86 V--PAFLEIHDIAGLV---RGAHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 86 ~--~~~i~lvD~~gl~---~~~~~~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP 143 (406)
. ....++.+...+. .+.... ......+++.+...+ -.+.++++. .+|+++++| ||
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLD---EP 163 (271)
T PRK13638 87 EQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLD---EP 163 (271)
T ss_pred hhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEe---CC
Confidence 1 1111111211111 000000 000000111110000 013455555 689999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|..........+..+ .+. ...+.. .+|+...+..+|+++ .+|.+|+++..++
T Consensus 164 t~~LD~~~~~~l~~~l~~~---~~~-g~tii~-vtH~~~~~~~~~d~i-~~l~~G~i~~~g~ 219 (271)
T PRK13638 164 TAGLDPAGRTQMIAIIRRI---VAQ-GNHVII-SSHDIDLIYEISDAV-YVLRQGQILTHGA 219 (271)
T ss_pred cccCCHHHHHHHHHHHHHH---HHC-CCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999998864333222111 000 111111 139999999999999 7889998876654
No 162
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.32 E-value=1.5e-12 Score=136.05 Aligned_cols=170 Identities=15% Similarity=0.181 Sum_probs=101.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------h--hhccCCC-Cc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKS-AV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~p~~-~~ 86 (406)
+....+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|. ..
T Consensus 22 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 90 (501)
T PRK10762 22 GAALNVYPGRVMALVGENGAGKSTMMKVLTGI-----------YTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNL 90 (501)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhc
Confidence 34556789999999999999999999999999 779999999998654211 1 1355554 22
Q ss_pred CceeEEEeecccccccc---C---CC---CCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCC
Q 015465 87 PAFLEIHDIAGLVRGAH---E---GQ---GLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~---~---~~---~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~d 142 (406)
...+++.|...+..... . .. .....+++.+... .-.+.+++++ .+|+++++| |
T Consensus 91 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---E 167 (501)
T PRK10762 91 IPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMD---E 167 (501)
T ss_pred cCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 22334444332211000 0 00 0000001111000 0114455665 799999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++.+|..........+..+ ......+.. .+|+...+..+||++ .+|++|+++..+.
T Consensus 168 Pt~~LD~~~~~~l~~~l~~l----~~~~~tvii-~sHd~~~~~~~~d~i-~~l~~G~i~~~~~ 224 (501)
T PRK10762 168 PTDALTDTETESLFRVIREL----KSQGRGIVY-ISHRLKEIFEICDDV-TVFRDGQFIAERE 224 (501)
T ss_pred CcCCCCHHHHHHHHHHHHHH----HHCCCEEEE-EeCCHHHHHHhCCEE-EEEeCCEEEEecC
Confidence 99999999864443322211 110111111 239999999999999 8889999876544
No 163
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=5.5e-13 Score=127.40 Aligned_cols=169 Identities=14% Similarity=0.193 Sum_probs=96.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh--hhccCCC-CcCceeEE
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKS-AVPAFLEI 92 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~p~~-~~~~~i~l 92 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..+...++
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv 87 (255)
T PRK11248 19 DINLTLESGELLVVLGPSGCGKTTLLNLIAGF-----------VPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNV 87 (255)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcH
Confidence 34556889999999999999999999999999 6799999999887643211 2344443 22222333
Q ss_pred Eeeccccc---cccCC--CCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCchHHHHHH
Q 015465 93 HDIAGLVR---GAHEG--QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (406)
Q Consensus 93 vD~~gl~~---~~~~~--~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~ 152 (406)
.+...+.. +.... ......+++.+... .-.+.+++++ .+|+++++| ||++.+|....
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD---EPt~~LD~~~~ 164 (255)
T PRK11248 88 QDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD---EPFGALDAFTR 164 (255)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHH
Confidence 33222110 00000 00000011111000 0014455555 689999999 99999999886
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhh--CCCcccc
Q 015465 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ--DGKDVRL 203 (406)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~--~g~~~~~ 203 (406)
+.....+..+ ...-...+ .-.+|+...+..+|+++ ..|. +|+++..
T Consensus 165 ~~l~~~L~~~---~~~~g~tv-iivsH~~~~~~~~~d~i-~~l~~~~G~i~~~ 212 (255)
T PRK11248 165 EQMQTLLLKL---WQETGKQV-LLITHDIEEAVFMATEL-VLLSPGPGRVVER 212 (255)
T ss_pred HHHHHHHHHH---HHhcCCEE-EEEeCCHHHHHHhCCEE-EEEeCCCcEEEEE
Confidence 4433322111 00001111 11239999999999998 6776 4766544
No 164
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.32 E-value=3.5e-13 Score=135.46 Aligned_cols=171 Identities=17% Similarity=0.208 Sum_probs=103.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCc----chhh-----h------hhhc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE----RFEW-----L------CQLF 80 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~----~~~~-----l------~~~~ 80 (406)
+..-.+.+|++++|+|+||||||||+++|+|. .+|++|.|.++|. ++.. + ...|
T Consensus 42 ~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl-----------~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~ 110 (382)
T TIGR03415 42 NASLDIEEGEICVLMGLSGSGKSSLLRAVNGL-----------NPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSM 110 (382)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEE
Confidence 34456889999999999999999999999999 7899999999884 2211 1 1234
Q ss_pred cCCC-CcCceeEEEeeccccccc---cCC--CCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecC
Q 015465 81 KPKS-AVPAFLEIHDIAGLVRGA---HEG--QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 81 ~p~~-~~~~~i~lvD~~gl~~~~---~~~--~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~ 139 (406)
.+|. ..+...++.|...+.... ... ......+++.+... .-.+.+.+++ .+|+++++|
T Consensus 111 vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD- 189 (382)
T TIGR03415 111 VFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD- 189 (382)
T ss_pred EECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE-
Confidence 4554 233335555554432110 000 00000111111000 0114456666 799999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|+........-+..+.+ .....+.. .+|++.++.++|+++ .+|.+|+++..++
T Consensus 190 --EPts~LD~~~r~~l~~~L~~l~~---~~~~TII~-iTHdl~e~~~l~DrI-~vl~~G~iv~~g~ 248 (382)
T TIGR03415 190 --EPFSALDPLIRTQLQDELLELQA---KLNKTIIF-VSHDLDEALKIGNRI-AIMEGGRIIQHGT 248 (382)
T ss_pred --CCCccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 99999999986443332211111 00111111 139999999999999 8999999876654
No 165
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=4e-13 Score=130.76 Aligned_cols=172 Identities=12% Similarity=0.120 Sum_probs=101.3
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh---------hh--hhccCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QLFKPK 83 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~---------l~--~~~~p~ 83 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. .. ..|.+|
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q 92 (290)
T PRK13634 24 YDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL-----------LQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQ 92 (290)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccchHHHHHhhEEEEee
Confidence 445567889999999999999999999999999 77999999999976531 11 235555
Q ss_pred CC--cCceeEEEeeccccccc---cCC--CCCcchhhhhHHhh---------------hchhhhhccc-CCCceEeecCC
Q 015465 84 SA--VPAFLEIHDIAGLVRGA---HEG--QGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 84 ~~--~~~~i~lvD~~gl~~~~---~~~--~~l~~~~l~~l~~a---------------d~ll~vvda~-~~~~il~ld~~ 140 (406)
.. .....++.|...+.... ... ......+++.+... .-.+.++++. .+|+++++|
T Consensus 93 ~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllD-- 170 (290)
T PRK13634 93 FPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLD-- 170 (290)
T ss_pred CchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE--
Confidence 42 11112333332221100 000 00000001111000 0013455555 799999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|..........+..+. ......+ .-.+|+...+..+||++ .+|++|+++..++
T Consensus 171 -EPt~~LD~~~~~~l~~~L~~l~---~~~g~tv-iiitHd~~~~~~~~drv-~~l~~G~i~~~g~ 229 (290)
T PRK13634 171 -EPTAGLDPKGRKEMMEMFYKLH---KEKGLTT-VLVTHSMEDAARYADQI-VVMHKGTVFLQGT 229 (290)
T ss_pred -CCcccCCHHHHHHHHHHHHHHH---HhcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999999988543322221110 0001111 11139999999999999 8889999887664
No 166
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.31 E-value=9.8e-13 Score=126.45 Aligned_cols=172 Identities=17% Similarity=0.211 Sum_probs=98.0
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-----hh--hhccCCCC--
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPKSA-- 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-----l~--~~~~p~~~-- 85 (406)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. .. ..|.||..
T Consensus 30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~ 98 (267)
T PRK15112 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM-----------IEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPST 98 (267)
T ss_pred eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEECCCCchhhHhccEEEEecCchh
Confidence 344566889999999999999999999999999 78999999998865431 11 13444432
Q ss_pred -cCceeEEEeecccc---c-cccC--CCCCcchhhhhHHh---------------hhchhhhhccc-CCCceEeecCCCC
Q 015465 86 -VPAFLEIHDIAGLV---R-GAHE--GQGLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 86 -~~~~i~lvD~~gl~---~-~~~~--~~~l~~~~l~~l~~---------------ad~ll~vvda~-~~~~il~ld~~~d 142 (406)
....+++.+...+. . .... .......+++.+.. -...+.+++++ .+|+++++| |
T Consensus 99 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---E 175 (267)
T PRK15112 99 SLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIAD---E 175 (267)
T ss_pred hcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEc---C
Confidence 11111111111110 0 0000 00000000111000 00013455555 699999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++.+|....+....-+..+.+ .....+ .-.+|+...+..+|+++ ..|.+|++...++
T Consensus 176 Pt~~LD~~~~~~l~~~l~~~~~---~~g~tv-iivsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 233 (267)
T PRK15112 176 ALASLDMSMRSQLINLMLELQE---KQGISY-IYVTQHLGMMKHISDQV-LVMHQGEVVERGS 233 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHHH---HcCcEE-EEEeCCHHHHHHhcCEE-EEEECCEEEecCC
Confidence 9999999886443332211110 001111 11239999999999999 7888898875543
No 167
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=3e-13 Score=130.54 Aligned_cols=167 Identities=17% Similarity=0.104 Sum_probs=98.5
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------h--hhccCCCC-
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSA- 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~p~~~- 85 (406)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||..
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 87 (274)
T PRK13644 19 ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL-----------LRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPE 87 (274)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEECCccccHHHHHhheEEEEEChh
Confidence 344466889999999999999999999999999 679999999998765321 1 13444432
Q ss_pred -cCceeEEEeeccccccccC-C----CCCcchhhhhHHhh---h-----------chhhhhccc-CCCceEeecCCCCCC
Q 015465 86 -VPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAV---D-----------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 86 -~~~~i~lvD~~gl~~~~~~-~----~~l~~~~l~~l~~a---d-----------~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
.....++.|...+...... . ......+++.+... + -.+.+++++ .+|+++++| ||+
T Consensus 88 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt 164 (274)
T PRK13644 88 TQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD---EVT 164 (274)
T ss_pred hhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCc
Confidence 1112233333222110000 0 00000001100000 0 014455655 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHH---HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEK---SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~---~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+++|.......... +..+.. .+ .-.+|+...+ ..|+++ .+|++|+++..++
T Consensus 165 ~gLD~~~~~~l~~~-------l~~l~~~g~ti-l~~tH~~~~~-~~~d~v-~~l~~G~i~~~g~ 218 (274)
T PRK13644 165 SMLDPDSGIAVLER-------IKKLHEKGKTI-VYITHNLEEL-HDADRI-IVMDRGKIVLEGE 218 (274)
T ss_pred ccCCHHHHHHHHHH-------HHHHHhCCCEE-EEEecCHHHH-hhCCEE-EEEECCEEEEECC
Confidence 99999885433222 211111 11 1113999887 469999 8889999876654
No 168
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=5.7e-13 Score=125.36 Aligned_cols=166 Identities=13% Similarity=0.176 Sum_probs=98.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----hhhccCCCC-cCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKSA-VPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~~~~~p~~~-~~~~ 89 (406)
+....+.+|++++|+|+||+|||||+++|+|. ..|+.|.|.++|.++... ...|.++.. ....
T Consensus 18 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (232)
T cd03300 18 GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF-----------ETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPH 86 (232)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcCcCChhhcceEEEecccccCCC
Confidence 34456889999999999999999999999999 678999999988765321 123444442 2222
Q ss_pred eEEEeeccccccccC--C---CCCcchhhhhHHh--------------hhchhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAHE--G---QGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~~--~---~~l~~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+...... . .......++.+.. ..-.+.+++++ .+|+++++| ||+.++|.
T Consensus 87 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD---EP~~gLD~ 163 (232)
T cd03300 87 LTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD---EPLGALDL 163 (232)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCH
Confidence 333333221110000 0 0000000000000 00013455555 799999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH----HhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 150 ISAELRLKDIEFMERRIEDVEK----SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~----~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
......... +..+.+ .+.. .+|+...+..+||++ .+|.+|++...+
T Consensus 164 ~~~~~l~~~-------l~~~~~~~~~tiii-~sh~~~~~~~~~d~i-~~l~~G~~~~~~ 213 (232)
T cd03300 164 KLRKDMQLE-------LKRLQKELGITFVF-VTHDQEEALTMSDRI-AVMNKGKIQQIG 213 (232)
T ss_pred HHHHHHHHH-------HHHHHHHcCCEEEE-EeCCHHHHHHhcCEE-EEEECCEEEecC
Confidence 986433222 222211 1111 139999999999999 888889876554
No 169
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.31 E-value=7e-13 Score=125.89 Aligned_cols=169 Identities=17% Similarity=0.208 Sum_probs=101.4
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCc-----eeEEEcCCcchhhh---------hhhc
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-----EARVNIPDERFEWL---------CQLF 80 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~-----~G~i~v~g~~~~~l---------~~~~ 80 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|+ +|.|.++|.++... ...|
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 86 (247)
T TIGR00972 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM-----------NDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGM 86 (247)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCcCCCCceEEEECCEEccccccchHHHHhheEE
Confidence 344566889999999999999999999999999 5666 99999988765321 1235
Q ss_pred cCCCC-cCceeEEEeeccccccccC---CC---CCcchhhhhHHhh------------------hchhhhhccc-CCCce
Q 015465 81 KPKSA-VPAFLEIHDIAGLVRGAHE---GQ---GLGNSFLSHIRAV------------------DGIFHVLRAF-EDPDI 134 (406)
Q Consensus 81 ~p~~~-~~~~i~lvD~~gl~~~~~~---~~---~l~~~~l~~l~~a------------------d~ll~vvda~-~~~~i 134 (406)
.||.. ... .++.|...+...... .. ......++.+... .-.+.+++++ .+|++
T Consensus 87 v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 165 (247)
T TIGR00972 87 VFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEV 165 (247)
T ss_pred EecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 55542 221 333333322110000 00 0000000000000 0113455665 68999
Q ss_pred EeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 135 l~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+++| ||++.+|..........+..+.+ ...+.. .+|+...+..+|+++ .+|++|++...++
T Consensus 166 lllD---EPt~~LD~~~~~~l~~~l~~~~~-----~~tiii-vsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 226 (247)
T TIGR00972 166 LLLD---EPTSALDPIATGKIEELIQELKK-----KYTIVI-VTHNMQQAARISDRT-AFFYDGELVEYGP 226 (247)
T ss_pred EEEe---CCcccCCHHHHHHHHHHHHHHHh-----cCeEEE-EecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999 99999999986544333222111 111111 239999999999999 8899998876543
No 170
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=4.4e-12 Score=115.22 Aligned_cols=173 Identities=18% Similarity=0.189 Sum_probs=110.2
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------h--hhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~--~~~~p~~~~ 86 (406)
.....+.++.+.++|||+|||||||+++|..+.-.+ |. -...|.|.++|+++... . .+..-|+.-
T Consensus 25 ~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~---~~---~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 25 DINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLI---PG---ARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred cCceeccCCceEEEECCCCcCHHHHHHHHHhhcccC---cC---ceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 344568889999999999999999999999884321 11 12469999988765321 1 133446655
Q ss_pred CceeEEEeeccccccccCCC--CCcchhhhhHHhhhch---------------------hhhhccc-CCCceEeecCCCC
Q 015465 87 PAFLEIHDIAGLVRGAHEGQ--GLGNSFLSHIRAVDGI---------------------FHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~~~--~l~~~~l~~l~~ad~l---------------------l~vvda~-~~~~il~ld~~~d 142 (406)
|+.+.+.|...++...+... .+.......++.|.+. +-++|+. -+|+++.+| |
T Consensus 99 PFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmD---E 175 (253)
T COG1117 99 PFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMD---E 175 (253)
T ss_pred CCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEec---C
Confidence 66688889887765444321 1111122222222211 4466666 689999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHh-hhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSM-KRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~-~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++.+|++...- ++..+..+.+.. ..-.+|++....++-|+. +++..|+++..++
T Consensus 176 PtSALDPIsT~k-------IEeLi~eLk~~yTIviVTHnmqQAaRvSD~t-aFf~~G~LvE~g~ 231 (253)
T COG1117 176 PTSALDPISTLK-------IEELITELKKKYTIVIVTHNMQQAARVSDYT-AFFYLGELVEFGP 231 (253)
T ss_pred cccccCchhHHH-------HHHHHHHHHhccEEEEEeCCHHHHHHHhHhh-hhhcccEEEEEcC
Confidence 999999998522 222222222110 011259999999999999 8888998886654
No 171
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=6.3e-13 Score=128.64 Aligned_cols=167 Identities=16% Similarity=0.140 Sum_probs=99.7
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCC--
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSA-- 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~-- 85 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|..
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~ 92 (279)
T PRK13635 24 KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL-----------LLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDN 92 (279)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHH
Confidence 344567889999999999999999999999999 7899999999997653211 13555542
Q ss_pred cCceeEEEeeccccccccC--CCCC---cchhhhhHHh--------------hhchhhhhccc-CCCceEeecCCCCCCc
Q 015465 86 VPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~--~~~l---~~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
.....++.|...+...... .... ...++..+.. ....+.+++++ .+|+++++| ||++
T Consensus 93 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt~ 169 (279)
T PRK13635 93 QFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILD---EATS 169 (279)
T ss_pred hcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcc
Confidence 2222344443322110000 0000 0000110000 00114455665 799999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHH----HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEK----SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~----~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++|.........- +.++.+ .+ .-.+|+...+. .|+++ .+|.+|++...++
T Consensus 170 gLD~~~~~~l~~~-------l~~l~~~~~~ti-livsH~~~~~~-~~d~i-~~l~~G~i~~~g~ 223 (279)
T PRK13635 170 MLDPRGRREVLET-------VRQLKEQKGITV-LSITHDLDEAA-QADRV-IVMNKGEILEEGT 223 (279)
T ss_pred cCCHHHHHHHHHH-------HHHHHHcCCCEE-EEEecCHHHHH-cCCEE-EEEECCEEEEECC
Confidence 9999986433222 222111 11 11138888876 49998 8889998876654
No 172
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.31 E-value=6.1e-13 Score=139.24 Aligned_cols=172 Identities=16% Similarity=0.201 Sum_probs=102.9
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------hhhccCCC-C
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKS-A 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~p~~-~ 85 (406)
.+....+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++... ...|.+|. .
T Consensus 22 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 90 (510)
T PRK09700 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI-----------HEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELS 90 (510)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------cCCCccEEEECCEECCCCCHHHHHHCCeEEEeeccc
Confidence 345556789999999999999999999999999 678999999998765321 12355554 2
Q ss_pred cCceeEEEeecccccccc---CCC---------CCcchhhhhHHhh--------------hchhhhhccc-CCCceEeec
Q 015465 86 VPAFLEIHDIAGLVRGAH---EGQ---------GLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVD 138 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~---~~~---------~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld 138 (406)
....+++.|...+..... .+. .....+++.+... .-.+.+++++ .+|+++++|
T Consensus 91 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLD 170 (510)
T PRK09700 91 VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMD 170 (510)
T ss_pred ccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 222233333322211000 000 0000011111000 0014455665 799999999
Q ss_pred CCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 139 ~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
||++.+|+.........+..+ ..-...+.. .+|+...+..+|+++ .+|.+|+++..++.
T Consensus 171 ---EPt~~LD~~~~~~l~~~l~~l----~~~g~tiii-vsHd~~~~~~~~d~v-~~l~~G~i~~~g~~ 229 (510)
T PRK09700 171 ---EPTSSLTNKEVDYLFLIMNQL----RKEGTAIVY-ISHKLAEIRRICDRY-TVMKDGSSVCSGMV 229 (510)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHH----HhCCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEeeecch
Confidence 999999999864443332211 110111111 239999999999999 88899998766543
No 173
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=9.1e-13 Score=127.25 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=101.2
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~ 85 (406)
.+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.. .. ..|.||..
T Consensus 19 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 87 (275)
T PRK13639 19 KGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI-----------LKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNP 87 (275)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCEECccccchHHHHHhheEEEeeCh
Confidence 344567889999999999999999999999999 67999999999876521 11 13555542
Q ss_pred --cCceeEEEeeccccccccC--CCCC---cchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCC
Q 015465 86 --VPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 86 --~~~~i~lvD~~gl~~~~~~--~~~l---~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.....++.|...+...... .... ...+++.+... .-.+.+++++ .+|+++++| ||
T Consensus 88 ~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD---EP 164 (275)
T PRK13639 88 DDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD---EP 164 (275)
T ss_pred hhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CC
Confidence 1112333343322110000 0000 00011111000 0013455555 789999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHH---HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEK---SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~---~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|.........- +..+.+ .+ .-.+|+...+.++|+++ .+|++|+++..++
T Consensus 165 t~gLD~~~~~~l~~~-------l~~l~~~~~ti-l~vtH~~~~~~~~~d~i-~~l~~G~i~~~g~ 220 (275)
T PRK13639 165 TSGLDPMGASQIMKL-------LYDLNKEGITI-IISTHDVDLVPVYADKV-YVMSDGKIIKEGT 220 (275)
T ss_pred CcCCCHHHHHHHHHH-------HHHHHHCCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999986433222 221111 11 11139999999999999 8889998877654
No 174
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=7.2e-13 Score=128.70 Aligned_cols=173 Identities=16% Similarity=0.176 Sum_probs=102.6
Q ss_pred cCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh---------hh--hhccC
Q 015465 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QLFKP 82 (406)
Q Consensus 14 ~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~---------l~--~~~~p 82 (406)
-......+.+|+++||+|+||||||||+++|+|. ..|+.|.|.++|.++.. +. ..|.+
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~ 91 (286)
T PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL-----------LKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVF 91 (286)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccchHHHHHhheEEEe
Confidence 3444567889999999999999999999999999 78999999999876522 11 24555
Q ss_pred CCC--cCceeEEEeeccccccc---cCC--CCCcchhhhhHHhh---------------hchhhhhccc-CCCceEeecC
Q 015465 83 KSA--VPAFLEIHDIAGLVRGA---HEG--QGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 83 ~~~--~~~~i~lvD~~gl~~~~---~~~--~~l~~~~l~~l~~a---------------d~ll~vvda~-~~~~il~ld~ 139 (406)
|.. .....++.|...+.... ... ......++..+... .-.+.+++++ .+|+++++|
T Consensus 92 q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlD- 170 (286)
T PRK13646 92 QFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD- 170 (286)
T ss_pred cChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE-
Confidence 542 11112333333221100 000 00000111111100 0014455665 799999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|+.........+..+.+ .....+ .-.+|++..+..+|+++ .+|.+|+++..++
T Consensus 171 --EPt~~LD~~~~~~l~~~l~~l~~---~~g~tv-l~vtH~~~~~~~~~dri-~~l~~G~i~~~g~ 229 (286)
T PRK13646 171 --EPTAGLDPQSKRQVMRLLKSLQT---DENKTI-ILVSHDMNEVARYADEV-IVMKEGSIVSQTS 229 (286)
T ss_pred --CCcccCCHHHHHHHHHHHHHHHH---hCCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999999986443332211110 000111 11239999999999999 8889999887654
No 175
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.30 E-value=1.3e-12 Score=124.27 Aligned_cols=156 Identities=19% Similarity=0.268 Sum_probs=87.5
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCC-cCceeEEEeec
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIA 96 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~-~~~~i~lvD~~ 96 (406)
.|.+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++ .|.||.. .....++.|..
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~-----------~~p~~G~i~~~g~~i-----~~~~q~~~~~~~~tv~e~l 82 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGV-----------LKPDEGDIEIELDTV-----SYKPQYIKADYEGTVRDLL 82 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCCCeEEECCceE-----EEecccccCCCCCCHHHHH
Confidence 456778999999999999999999999999 779999999887533 2333331 11112222221
Q ss_pred ccccccc-CCCCCcchhhhhHHh--------------hhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHH
Q 015465 97 GLVRGAH-EGQGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (406)
Q Consensus 97 gl~~~~~-~~~~l~~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~ 160 (406)
....... ........++..+.. ....+.++++. .+|+++++| ||++.+|+...+.....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllD---EPt~~LD~~~~~~l~~~l~ 159 (246)
T cd03237 83 SSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLD---EPSAYLDVEQRLMASKVIR 159 (246)
T ss_pred HHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHHHHHH
Confidence 1100000 000000001110000 00113455555 699999999 9999999988644333221
Q ss_pred HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhC
Q 015465 161 FMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD 197 (406)
Q Consensus 161 ~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~ 197 (406)
.+. ......+ .-.+|+...+..+|+++ .+|+.
T Consensus 160 ~~~---~~~~~ti-iivsHd~~~~~~~~d~i-~~l~~ 191 (246)
T cd03237 160 RFA---ENNEKTA-FVVEHDIIMIDYLADRL-IVFEG 191 (246)
T ss_pred HHH---HhcCCEE-EEEeCCHHHHHHhCCEE-EEEcC
Confidence 111 0000111 11239999999999998 56643
No 176
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.30 E-value=1.6e-12 Score=122.31 Aligned_cols=164 Identities=20% Similarity=0.224 Sum_probs=98.8
Q ss_pred cCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh------hhh--hcc---C
Q 015465 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ--LFK---P 82 (406)
Q Consensus 14 ~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------l~~--~~~---p 82 (406)
-......+.+|+.++|+|+||||||||+++|+|+ ..|++|.|.++|.++.. +.. ++. |
T Consensus 20 l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL-----------l~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnp 88 (235)
T COG1122 20 LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL-----------LKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNP 88 (235)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc-----------CcCCCCEEEECCeeccchhhHHHhhcceEEEEECc
Confidence 3444566889999999999999999999999999 88999999999876431 111 111 1
Q ss_pred CCCcCceeEEEeecccccccc----------------------------CCCCCcchhhhhHHhhhchhhhhcccCCCce
Q 015465 83 KSAVPAFLEIHDIAGLVRGAH----------------------------EGQGLGNSFLSHIRAVDGIFHVLRAFEDPDI 134 (406)
Q Consensus 83 ~~~~~~~i~lvD~~gl~~~~~----------------------------~~~~l~~~~l~~l~~ad~ll~vvda~~~~~i 134 (406)
..... .-++.|-..+..... ...+.|.+ +++..|.++. .+|++
T Consensus 89 d~q~~-~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqk--qRvaIA~vLa------~~P~i 159 (235)
T COG1122 89 DDQLF-GPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQK--QRVAIAGVLA------MGPEI 159 (235)
T ss_pred ccccc-cCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcce--eeHHhhHHHH------cCCCE
Confidence 11110 011111111111000 00111111 2233333333 38999
Q ss_pred EeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 135 l~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+++| ||++.+|+......+.-+..+.+ ...+.+ ...+|+++.+...++++ ..|.+|+++..|+
T Consensus 160 liLD---EPta~LD~~~~~~l~~~l~~L~~---~~~~ti-i~~tHd~~~~~~~ad~v-~vl~~G~i~~~g~ 222 (235)
T COG1122 160 LLLD---EPTAGLDPKGRRELLELLKKLKE---EGGKTI-IIVTHDLELVLEYADRV-VVLDDGKILADGD 222 (235)
T ss_pred EEEc---CCCCCCCHHHHHHHHHHHHHHHh---cCCCeE-EEEeCcHHHHHhhCCEE-EEEECCEEeecCC
Confidence 9999 99999999986444332211111 000011 11249999999999999 8999999988775
No 177
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.30 E-value=1.6e-12 Score=151.65 Aligned_cols=171 Identities=16% Similarity=0.231 Sum_probs=105.4
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh----h--hhhccCCC-CcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----L--CQLFKPKS-AVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~----l--~~~~~p~~-~~~~~ 89 (406)
..-.+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.. . ..+|.||. .....
T Consensus 1958 ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl-----------l~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~ 2026 (2272)
T TIGR01257 1958 LCVGVRPGECFGLLGVNGAGKTTTFKMLTGD-----------TTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDL 2026 (2272)
T ss_pred eEEEEcCCcEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCC
Confidence 3445789999999999999999999999999 78999999999976531 1 12466665 23333
Q ss_pred eEEEeecccc---ccccCC--CCCcchhhhhHHhh---h-----------chhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLV---RGAHEG--QGLGNSFLSHIRAV---D-----------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~---~~~~~~--~~l~~~~l~~l~~a---d-----------~ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+. .+.... ......+++.+... | --+.++.|. .+|+++++| ||++++|+
T Consensus 2027 LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLD---EPTsGLDp 2103 (2272)
T TIGR01257 2027 LTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD---EPTTGMDP 2103 (2272)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCCCH
Confidence 4444433221 110000 00000011111000 0 013445555 699999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
..+......+..+. +. +..+.. .+|++++++.+|+++ .+|.+|+++..|+..
T Consensus 2104 ~sr~~l~~lL~~l~---~~-g~TIIL-tTH~mee~e~lcDrV-~IL~~G~i~~~Gs~q 2155 (2272)
T TIGR01257 2104 QARRMLWNTIVSII---RE-GRAVVL-TSHSMEECEALCTRL-AIMVKGAFQCLGTIQ 2155 (2272)
T ss_pred HHHHHHHHHHHHHH---hC-CCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEECCHH
Confidence 98644433222111 00 111111 139999999999999 999999998877543
No 178
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.30 E-value=1.7e-12 Score=122.02 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=96.7
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCC----ceeEEEcCCcchhhh-----hhhccCCCC---
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP----NEARVNIPDERFEWL-----CQLFKPKSA--- 85 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p----~~G~i~v~g~~~~~l-----~~~~~p~~~--- 85 (406)
...+.+|++++|+|+||||||||+++|+|. ..| ++|.|.++|.++... ...|.+|..
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~ 74 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGL-----------LPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTA 74 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCccCccccEEEECCEechhhhhhhheeEEEecCchhh
Confidence 446789999999999999999999999999 556 899999999765322 123445442
Q ss_pred cCceeEEEeecccc---ccc-cCC-CCCcchhhhhHHh-----------------hhchhhhhccc-CCCceEeecCCCC
Q 015465 86 VPAFLEIHDIAGLV---RGA-HEG-QGLGNSFLSHIRA-----------------VDGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 86 ~~~~i~lvD~~gl~---~~~-~~~-~~l~~~~l~~l~~-----------------ad~ll~vvda~-~~~~il~ld~~~d 142 (406)
.+..+++.+..... ... ... ......+++.+.. -.-.+.+++++ .+|+++++| |
T Consensus 75 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD---E 151 (230)
T TIGR02770 75 FNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD---E 151 (230)
T ss_pred cCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc---C
Confidence 11112211111000 000 000 0000000110000 00113455555 799999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++++|....+.....+..+ .+.....+ .-.+|+...+..+|+++ .+|.+|++...++
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~---~~~~~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 209 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLREL---RQLFGTGI-LLITHDLGVVARIADEV-AVMDDGRIVERGT 209 (230)
T ss_pred CccccCHHHHHHHHHHHHHH---HHhcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999998854332222111 00000111 11139999999999999 8889998876553
No 179
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.30 E-value=1.1e-12 Score=125.30 Aligned_cols=169 Identities=19% Similarity=0.253 Sum_probs=102.2
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh------------hccCCCC
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------------LFKPKSA 85 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~------------~~~p~~~ 85 (406)
.-.++.|+++.|.|.+|||||||++++.++ ++|++|.|.++|.++..+.. +...+-.
T Consensus 48 sl~v~~GeIfViMGLSGSGKSTLvR~~NrL-----------iept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRL-----------IEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred eeeecCCeEEEEEecCCCCHHHHHHHHhcc-----------CCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 345789999999999999999999999999 89999999999987644321 1111112
Q ss_pred cCceeEEEeeccccccccC---C--CCCcchhhhhHHh--------------hhchhhhhccc-CCCceEeecCCCCCCc
Q 015465 86 VPAFLEIHDIAGLVRGAHE---G--QGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~---~--~~l~~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
..++.++.|+.+++-.... . ......+++.+.. ..--+-++||+ .+|+++++| ||++
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMD---EaFS 193 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMD---EAFS 193 (386)
T ss_pred cccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEec---Cchh
Confidence 2233444554444321110 0 0000001100000 00013455665 699999999 8888
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.+|++-+--....+-.++ .++.+++-+ .+|++++..++-+|| +++++|+++..|+
T Consensus 194 ALDPLIR~~mQdeLl~Lq---~~l~KTIvF-itHDLdEAlriG~rI-aimkdG~ivQ~Gt 248 (386)
T COG4175 194 ALDPLIRTEMQDELLELQ---AKLKKTIVF-ITHDLDEALRIGDRI-AIMKDGEIVQVGT 248 (386)
T ss_pred hcChHHHHHHHHHHHHHH---HHhCCeEEE-EecCHHHHHhccceE-EEecCCeEEEeCC
Confidence 888875422211111111 222222212 239999999999999 9999999998775
No 180
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.30 E-value=9.7e-13 Score=137.13 Aligned_cols=170 Identities=14% Similarity=0.196 Sum_probs=100.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------hhhccCCCC-c
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKSA-V 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~p~~~-~ 86 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.||.. .
T Consensus 16 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 84 (491)
T PRK10982 16 NVNLKVRPHSIHALMGENGAGKSTLLKCLFGI-----------YQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNL 84 (491)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCceEEEECCEECCCCCHHHHHhCCEEEEeccccc
Confidence 34456789999999999999999999999999 779999999998764211 123555542 2
Q ss_pred CceeEEEeeccccccccCCC-----C---CcchhhhhHHh--------------hhchhhhhccc-CCCceEeecCCCCC
Q 015465 87 PAFLEIHDIAGLVRGAHEGQ-----G---LGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~~~-----~---l~~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~~dP 143 (406)
...+++.|...+......+. . ....+++.+.. -.-.+.+++++ .+|+++++| ||
T Consensus 85 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD---EP 161 (491)
T PRK10982 85 VLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD---EP 161 (491)
T ss_pred ccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe---CC
Confidence 22233333322211000000 0 00000100000 00014455555 699999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|....+.....+..+ ......+ .-.+|+...+..+|+++ .+|.+|+++..++
T Consensus 162 t~~LD~~~~~~l~~~l~~l----~~~g~tv-ii~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 217 (491)
T PRK10982 162 TSSLTEKEVNHLFTIIRKL----KERGCGI-VYISHKMEEIFQLCDEI-TILRDGQWIATQP 217 (491)
T ss_pred CCCCCHHHHHHHHHHHHHH----HhCCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEeecC
Confidence 9999998864433322111 1001111 11139999999999999 8899999876654
No 181
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.30 E-value=1.8e-12 Score=124.96 Aligned_cols=169 Identities=18% Similarity=0.246 Sum_probs=96.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh----hhccCCCCcC---c
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----QLFKPKSAVP---A 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~----~~~~p~~~~~---~ 88 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.|+.... .
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~ 93 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGF-----------VRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSF 93 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEhHHhhccceEEEeccccccccCC
Confidence 34456889999999999999999999999999 7799999999997653211 2355554210 0
Q ss_pred eeEEEeecccccc-------cc-C-CCCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCC
Q 015465 89 FLEIHDIAGLVRG-------AH-E-GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 89 ~i~lvD~~gl~~~-------~~-~-~~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
...+.++..+... .. . .......+++.+...+ -.+.++++. .+|+++++| ||+
T Consensus 94 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD---EPt 170 (272)
T PRK15056 94 PVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD---EPF 170 (272)
T ss_pred CcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCC
Confidence 1112222111000 00 0 0000000111110000 014455555 789999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+++|....+....-+.. +..-...+.. .+|+...+..+|+++ .++ +|++...++
T Consensus 171 ~~LD~~~~~~l~~~L~~----~~~~g~tvii-vsH~~~~~~~~~d~v-~~~-~G~i~~~g~ 224 (272)
T PRK15056 171 TGVDVKTEARIISLLRE----LRDEGKTMLV-STHNLGSVTEFCDYT-VMV-KGTVLASGP 224 (272)
T ss_pred ccCCHHHHHHHHHHHHH----HHhCCCEEEE-EeCCHHHHHHhCCEE-EEE-CCEEEeecC
Confidence 99999886443322211 1000111111 139999999999998 455 788776554
No 182
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=1.2e-12 Score=128.32 Aligned_cols=171 Identities=15% Similarity=0.145 Sum_probs=99.1
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh--------------------
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------------------- 74 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~-------------------- 74 (406)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.+..
T Consensus 24 ~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 92 (305)
T PRK13651 24 DNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL-----------LLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKT 92 (305)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEEeceecccccccccccccccccccccc
Confidence 345567889999999999999999999999999 7789999998764321
Q ss_pred ---------hhh--hhccCCCC--cCceeEEEeeccccccccC--CCCC---cchhhhhHHh---------------hhc
Q 015465 75 ---------WLC--QLFKPKSA--VPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRA---------------VDG 121 (406)
Q Consensus 75 ---------~l~--~~~~p~~~--~~~~i~lvD~~gl~~~~~~--~~~l---~~~~l~~l~~---------------ad~ 121 (406)
.+. ..|.+|.. .....++.|...+...... .... ...+++.+.. ..-
T Consensus 93 ~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkq 172 (305)
T PRK13651 93 RFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKR 172 (305)
T ss_pred cccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHH
Confidence 111 13555531 1111233332222110000 0000 0000111000 000
Q ss_pred hhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCc
Q 015465 122 IFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (406)
Q Consensus 122 ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~ 200 (406)
.+.++++. .+|+++++| ||++.+|.......+..+..+ ......+ .-.+|++..+..+||++ .+|++|++
T Consensus 173 rvalA~aL~~~P~lLlLD---EPt~~LD~~~~~~l~~~l~~l----~~~g~ti-iivtHd~~~~~~~adrv-~vl~~G~i 243 (305)
T PRK13651 173 RVALAGILAMEPDFLVFD---EPTAGLDPQGVKEILEIFDNL----NKQGKTI-ILVTHDLDNVLEWTKRT-IFFKDGKI 243 (305)
T ss_pred HHHHHHHHHhCCCEEEEe---CCCCCCCHHHHHHHHHHHHHH----HHCCCEE-EEEeeCHHHHHHhCCEE-EEEECCEE
Confidence 13455555 699999999 999999998754333222111 1001111 11139999999999999 88899998
Q ss_pred cccCC
Q 015465 201 VRLGD 205 (406)
Q Consensus 201 ~~~~~ 205 (406)
+..++
T Consensus 244 ~~~g~ 248 (305)
T PRK13651 244 IKDGD 248 (305)
T ss_pred EEECC
Confidence 87665
No 183
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=1.1e-12 Score=124.81 Aligned_cols=175 Identities=14% Similarity=0.149 Sum_probs=101.7
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCC-c
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSA-V 86 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~-~ 86 (406)
.+....+.+|++++|+|+||||||||+++|+|...+ .| -.|++|.|.++|.++.... ..|.||.. .
T Consensus 20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~---~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 93 (250)
T PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL---YP---EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNP 93 (250)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CC---CCCCceEEEECCEECCcCCHHHHhccEEEEeccCcc
Confidence 344566889999999999999999999999998210 00 0147999999987653211 13555552 2
Q ss_pred CceeEEEeeccccccccC---C-CCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeecCC
Q 015465 87 PAFLEIHDIAGLVRGAHE---G-QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~---~-~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld~~ 140 (406)
....++.|...+...... . ........+.++..+ -.+.+++++ .+|+++++|
T Consensus 94 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD-- 171 (250)
T PRK14247 94 IPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD-- 171 (250)
T ss_pred CCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc--
Confidence 334455554432111000 0 000000001111110 114455666 789999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|..........+..+ .. ...+ .-.+|+...+..+|+++ .+|++|++...++
T Consensus 172 -EP~~~LD~~~~~~l~~~l~~~----~~-~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (250)
T PRK14247 172 -EPTANLDPENTAKIESLFLEL----KK-DMTI-VLVTHFPQQAARISDYV-AFLYKGQIVEWGP 228 (250)
T ss_pred -CCCccCCHHHHHHHHHHHHHH----hc-CCEE-EEEeCCHHHHHHhcCEE-EEEECCeEEEECC
Confidence 999999999864433322111 10 1111 11239999889999999 8889998876543
No 184
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.30 E-value=8.2e-13 Score=117.88 Aligned_cols=170 Identities=17% Similarity=0.201 Sum_probs=105.0
Q ss_pred cccCcCCCCcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccC--
Q 015465 5 ASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKP-- 82 (406)
Q Consensus 5 ~~~~~~~~~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p-- 82 (406)
++.++ .++-....-.+.+|+.+-++||+|||||||++.|.+. ..|++|.|.++|.++..+...-.|
T Consensus 10 ~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~-----------e~pt~G~i~~~~~dl~~l~~~~iP~L 77 (223)
T COG2884 10 AYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE-----------ERPTRGKILVNGHDLSRLKGREIPFL 77 (223)
T ss_pred hcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh-----------hcCCCceEEECCeecccccccccchh
Confidence 34444 2455666677899999999999999999999999999 789999999999887665432111
Q ss_pred --------CC-CcCceeEEEeecccc-------------------------ccccC---CCCCcchhhhhHHhhhchhhh
Q 015465 83 --------KS-AVPAFLEIHDIAGLV-------------------------RGAHE---GQGLGNSFLSHIRAVDGIFHV 125 (406)
Q Consensus 83 --------~~-~~~~~i~lvD~~gl~-------------------------~~~~~---~~~l~~~~l~~l~~ad~ll~v 125 (406)
|. ..-...+++|.+.+. ..... ..+.|++ +++..|.++++
T Consensus 78 RR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQ--QRvaIARAiV~- 154 (223)
T COG2884 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQ--QRVAIARAIVN- 154 (223)
T ss_pred hheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHH--HHHHHHHHHcc-
Confidence 11 222223444443332 11110 0112222 34444444444
Q ss_pred hcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcccc
Q 015465 126 LRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (406)
Q Consensus 126 vda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~ 203 (406)
.|.+++.| ||+..+|+-..+-++. +-..+++.+..+... +|+..-+...-.++ -.|++|++.++
T Consensus 155 -----~P~vLlAD---EPTGNLDp~~s~~im~----lfeeinr~GtTVl~A-THd~~lv~~~~~rv-l~l~~Grl~~d 218 (223)
T COG2884 155 -----QPAVLLAD---EPTGNLDPDLSWEIMR----LFEEINRLGTTVLMA-THDLELVNRMRHRV-LALEDGRLVRD 218 (223)
T ss_pred -----CCCeEeec---CCCCCCChHHHHHHHH----HHHHHhhcCcEEEEE-eccHHHHHhccCcE-EEEeCCEEEec
Confidence 99999999 9999898876433322 222233333322111 38887777776666 67788887765
No 185
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.30 E-value=1.2e-12 Score=123.68 Aligned_cols=170 Identities=15% Similarity=0.226 Sum_probs=99.0
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----hhhccCCCC-cCcee
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKSA-VPAFL 90 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~~~~~p~~~-~~~~i 90 (406)
....+.+|+++||+|+||||||||+++|+|. ..|+.|.+.++|.++... ...|.|+.. .+...
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (237)
T TIGR00968 19 VNLEVPTGSLVALLGPSGSGKSTLLRIIAGL-----------EQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHL 87 (237)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCC
Confidence 3446889999999999999999999999999 678999999988765321 123444432 22122
Q ss_pred EEEeeccccccccC--CCCCc---chhhhhHHhh---h-----------chhhhhccc-CCCceEeecCCCCCCchHHHH
Q 015465 91 EIHDIAGLVRGAHE--GQGLG---NSFLSHIRAV---D-----------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (406)
Q Consensus 91 ~lvD~~gl~~~~~~--~~~l~---~~~l~~l~~a---d-----------~ll~vvda~-~~~~il~ld~~~dP~~~ld~i 150 (406)
++.+...+...... ..... ..+++.+... + -.+.+++++ .+|+++++| ||++++|..
T Consensus 88 t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD---EP~~~LD~~ 164 (237)
T TIGR00968 88 TVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLD---EPFGALDAK 164 (237)
T ss_pred cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHH
Confidence 33332211110000 00000 0011111000 0 014455665 789999999 999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
..+.....+..+ .......+.. .+|....+..+|+++ ..|.+|++...++
T Consensus 165 ~~~~~~~~l~~~---~~~~~~tvli-~sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 214 (237)
T TIGR00968 165 VRKELRSWLRKL---HDEVHVTTVF-VTHDQEEAMEVADRI-VVMSNGKIEQIGS 214 (237)
T ss_pred HHHHHHHHHHHH---HHhcCCEEEE-EeCCHHHHHhhcCEE-EEEECCEEEEecC
Confidence 864443322111 0000111111 139999999999999 8889998875543
No 186
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.29 E-value=2.5e-12 Score=120.50 Aligned_cols=168 Identities=14% Similarity=0.189 Sum_probs=96.9
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccC---CceeEEEcCCcchhhh----hhhccCCC-Cc
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDERFEWL----CQLFKPKS-AV 86 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~---p~~G~i~v~g~~~~~l----~~~~~p~~-~~ 86 (406)
.+...++.+|++++|+|+||||||||+++|+|. .. |++|.+.++|.++... ...|.+|. ..
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~-----------~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~ 92 (226)
T cd03234 24 NDVSLHVESGQVMAILGSSGSGKTTLLDAISGR-----------VEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDIL 92 (226)
T ss_pred cCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc-----------cCCCCCCceEEEECCEECChHHhcccEEEeCCCCcc
Confidence 345567889999999999999999999999999 55 7899999988765321 12345554 22
Q ss_pred CceeEEEeecccccc---cc-CCCCC----cch-hhhhHHhhh--------------chhhhhccc-CCCceEeecCCCC
Q 015465 87 PAFLEIHDIAGLVRG---AH-EGQGL----GNS-FLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~---~~-~~~~l----~~~-~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~d 142 (406)
+..+++.|...+... .. ..... ... .+..+...+ --+.++++. .+|+++++| |
T Consensus 93 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlD---E 169 (226)
T cd03234 93 LPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILD---E 169 (226)
T ss_pred CcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEe---C
Confidence 323344333322100 00 00000 000 011100000 013455555 689999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccch-HHHHHHHHHHHHHhhCCCccc
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQL-KIEHELCQRVKAWLQDGKDVR 202 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~-~~v~~l~~~i~~~L~~g~~~~ 202 (406)
|++++|..........+..+ ......+.. .+|+. ..+.++||++ .+|.+|+++.
T Consensus 170 P~~gLD~~~~~~~~~~l~~~----~~~~~tiii-~sh~~~~~~~~~~d~i-~~l~~G~i~~ 224 (226)
T cd03234 170 PTSGLDSFTALNLVSTLSQL----ARRNRIVIL-TIHQPRSDLFRLFDRI-LLLSSGEIVY 224 (226)
T ss_pred CCcCCCHHHHHHHHHHHHHH----HHCCCEEEE-EecCCCHHHHHhCCEE-EEEeCCEEEe
Confidence 99999998864333322111 000111101 13887 5888999998 7888887654
No 187
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.29 E-value=1.2e-12 Score=125.44 Aligned_cols=171 Identities=15% Similarity=0.206 Sum_probs=99.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCc---eeEEEcCCcchhhh------------hhhc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWL------------CQLF 80 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~---~G~i~v~g~~~~~l------------~~~~ 80 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|+ +|.|.++|.++... ...|
T Consensus 22 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~ 90 (262)
T PRK09984 22 AVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL-----------ITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGY 90 (262)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCCceEEEECCEecccccccchhHHHHHhheEE
Confidence 34455789999999999999999999999999 4554 59999988754321 1245
Q ss_pred cCCC-CcCceeEEEeeccccccc---c--------CC--CCCcchhhhhHHhhh--------------chhhhhccc-CC
Q 015465 81 KPKS-AVPAFLEIHDIAGLVRGA---H--------EG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-ED 131 (406)
Q Consensus 81 ~p~~-~~~~~i~lvD~~gl~~~~---~--------~~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~ 131 (406)
.|+. .....+++.|...+.... . .. .......++.+...+ -.+.+++++ .+
T Consensus 91 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 170 (262)
T PRK09984 91 IFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQ 170 (262)
T ss_pred EccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcC
Confidence 5554 222233443333221000 0 00 000001111111000 014456665 79
Q ss_pred CceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 132 ~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|+++++| ||++++|....+.....+..+. +.....+ .-.+|+...+..+|+++ ..|.+|++...++
T Consensus 171 p~llllD---EPt~~LD~~~~~~l~~~l~~~~---~~~g~tv-ii~tH~~~~~~~~~d~i-~~l~~g~i~~~g~ 236 (262)
T PRK09984 171 AKVILAD---EPIASLDPESARIVMDTLRDIN---QNDGITV-VVTLHQVDYALRYCERI-VALRQGHVFYDGS 236 (262)
T ss_pred CCEEEec---CccccCCHHHHHHHHHHHHHHH---HhcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999 9999999988643333221110 0000111 11239999999999999 8888898876654
No 188
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.29 E-value=1.6e-12 Score=135.37 Aligned_cols=167 Identities=13% Similarity=0.045 Sum_probs=96.5
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----h--hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~p~~~~~~ 88 (406)
...-.+.+|++++|+|+||||||||+++|+|. ..|++|.|.+.|.++... . ..|.+|.....
T Consensus 21 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (490)
T PRK10938 21 LPSLTLNAGDSWAFVGANGSGKSALARALAGE-----------LPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTD 89 (490)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCceEEECCcccccCCHHHHHHHhceeccCcchh
Confidence 34456789999999999999999999999999 678999998877543211 1 13444431100
Q ss_pred ---------eeEEEeeccccccccCCCCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCC
Q 015465 89 ---------FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 89 ---------~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
.+++.+...... ........+++.+...+ -.+.+++++ .+|+++++| ||+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt 163 (490)
T PRK10938 90 MLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILD---EPF 163 (490)
T ss_pred hcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc---CCc
Confidence 011111110000 00000000111110000 013444554 699999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+.+|+...+.....+..+. +-...+.. .+|+...+..+||++ .+|++|+++..++
T Consensus 164 ~~LD~~~~~~l~~~l~~~~----~~g~tvii-~tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 218 (490)
T PRK10938 164 DGLDVASRQQLAELLASLH----QSGITLVL-VLNRFDEIPDFVQFA-GVLADCTLAETGE 218 (490)
T ss_pred ccCCHHHHHHHHHHHHHHH----hcCCeEEE-EeCCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 9999998644433322111 00111111 239999999999999 8899999876654
No 189
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.29 E-value=1.4e-12 Score=123.09 Aligned_cols=162 Identities=16% Similarity=0.158 Sum_probs=94.2
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------hhhccC-CC-CcCc
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKP-KS-AVPA 88 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~~~~~p-~~-~~~~ 88 (406)
....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.+.... ...|.+ +. .++.
T Consensus 40 vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSGL-----------LQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 3456789999999999999999999999999 679999999988653211 112333 22 2222
Q ss_pred eeEEEeeccccccccC--CCC---CcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCchHH
Q 015465 89 FLEIHDIAGLVRGAHE--GQG---LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~--~~~---l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld 148 (406)
.+++.|...+...... ... ....+++.+... .-.+.+++++ .+|+++++| ||++++|
T Consensus 109 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD 185 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLD---EPTIGLD 185 (236)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCC
Confidence 2333332211110000 000 000001100000 0114455555 799999999 9999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH----HhhhccccchHHHHHHHHHHHHHhhCCCcc
Q 015465 149 VISAELRLKDIEFMERRIEDVEK----SMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (406)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~----~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~ 201 (406)
....+..... +..+.+ .+ .-.+|+...+..+|+++ ..|.+|++.
T Consensus 186 ~~~~~~l~~~-------l~~~~~~~~~ti-iivsH~~~~~~~~~d~i-~~l~~G~i~ 233 (236)
T cd03267 186 VVAQENIRNF-------LKEYNRERGTTV-LLTSHYMKDIEALARRV-LVIDKGRLL 233 (236)
T ss_pred HHHHHHHHHH-------HHHHHhcCCCEE-EEEecCHHHHHHhCCEE-EEEeCCEEE
Confidence 9986443332 222211 11 11139999889999998 777778764
No 190
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.29 E-value=1.5e-12 Score=123.83 Aligned_cols=166 Identities=16% Similarity=0.245 Sum_probs=98.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------hhhccCCCC-cC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPKSA-VP 87 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~~~~~p~~~-~~ 87 (406)
+....+.+|++++|+|+||||||||+++|+|. . |.+|.|.++|.++... ...|.|+.. ..
T Consensus 14 ~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl-----------~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 81 (248)
T PRK03695 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAGL-----------L-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPP 81 (248)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------C-CCCeEEEECCEecCcCCHHHHhhheEEecccCccC
Confidence 44456889999999999999999999999998 4 3489999988754221 123555542 22
Q ss_pred ceeEEEeeccccccccCCC----CCcchhhhhHHhhh--------------chhhhhccc-C-------CCceEeecCCC
Q 015465 88 AFLEIHDIAGLVRGAHEGQ----GLGNSFLSHIRAVD--------------GIFHVLRAF-E-------DPDIIHVDDSV 141 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~~~----~l~~~~l~~l~~ad--------------~ll~vvda~-~-------~~~il~ld~~~ 141 (406)
..+++.+...+........ .....+++.+...+ -.+.+++++ . +|+++++|
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD--- 158 (248)
T PRK03695 82 FAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD--- 158 (248)
T ss_pred CCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc---
Confidence 2333333332221100000 00001111111000 114455555 3 56999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHH---HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEK---SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~---~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|.......... +..+.+ .+ .-.+|+...+..+|+++ .+|++|+++..++
T Consensus 159 EPt~~LD~~~~~~l~~~-------L~~~~~~~~tv-i~~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 216 (248)
T PRK03695 159 EPMNSLDVAQQAALDRL-------LSELCQQGIAV-VMSSHDLNHTLRHADRV-WLLKQGKLLASGR 216 (248)
T ss_pred CCcccCCHHHHHHHHHH-------HHHHHhCCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999999986433322 222211 11 11139999999999999 8899999876654
No 191
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=9.3e-13 Score=137.78 Aligned_cols=170 Identities=15% Similarity=0.126 Sum_probs=101.6
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccC-CceeEEEcCCcchhh------h--hhhccCCCC--
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-PNEARVNIPDERFEW------L--CQLFKPKSA-- 85 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~-p~~G~i~v~g~~~~~------l--~~~~~p~~~-- 85 (406)
....+.+|+++||+|+||||||||+++|+|. .. |++|.|.++|.++.. . ...|.+|..
T Consensus 281 vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-----------~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 349 (506)
T PRK13549 281 VSFSLRRGEILGIAGLVGAGRTELVQCLFGA-----------YPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKR 349 (506)
T ss_pred eeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC-----------CCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhh
Confidence 3456789999999999999999999999999 56 489999998865421 1 124556542
Q ss_pred --cCceeEEEeeccccc--ccc-----CCC---CCcchhhhhHHhh---------------hchhhhhccc-CCCceEee
Q 015465 86 --VPAFLEIHDIAGLVR--GAH-----EGQ---GLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHV 137 (406)
Q Consensus 86 --~~~~i~lvD~~gl~~--~~~-----~~~---~l~~~~l~~l~~a---------------d~ll~vvda~-~~~~il~l 137 (406)
....+++.|..-+.. ... ... .....+++.+... .-.+.+++++ .+|+++++
T Consensus 350 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllL 429 (506)
T PRK13549 350 DGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILIL 429 (506)
T ss_pred CCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 233344444332110 000 000 0000111111110 0014455665 68999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 138 d~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
| ||++++|+...+.....+..+. +....+.. .+|+...+..+||++ .+|.+|+++..++.
T Consensus 430 D---EPt~~LD~~~~~~l~~~l~~l~----~~g~tvi~-~sHd~~~~~~~~d~v-~~l~~G~i~~~~~~ 489 (506)
T PRK13549 430 D---EPTRGIDVGAKYEIYKLINQLV----QQGVAIIV-ISSELPEVLGLSDRV-LVMHEGKLKGDLIN 489 (506)
T ss_pred c---CCCCCcCHhHHHHHHHHHHHHH----HCCCEEEE-ECCCHHHHHHhCCEE-EEEECCEEEEEecc
Confidence 9 9999999998644433322111 00111111 139999999999999 78999998765543
No 192
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.29 E-value=1.5e-12 Score=125.59 Aligned_cols=171 Identities=19% Similarity=0.248 Sum_probs=100.5
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCc--------eeEEEcCCcchhhh-----h--hhc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN--------EARVNIPDERFEWL-----C--QLF 80 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~--------~G~i~v~g~~~~~l-----~--~~~ 80 (406)
+...++.+|++++|+|+||||||||+++|+|. ..|+ +|.|.++|.++... . ..|
T Consensus 19 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~-----------~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 87 (272)
T PRK13547 19 DLSLRIEPGRVTALLGRNGAGKSTLLKALAGD-----------LTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAV 87 (272)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCcccccccCCceEEEECCEEcccCCHHHHHhhcEE
Confidence 44456889999999999999999999999999 5666 89999998765321 1 235
Q ss_pred cCCCC-cCceeEEEeeccccccccC---C---C---CCcchhhhhHHhhh--------------chhhhhcccC------
Q 015465 81 KPKSA-VPAFLEIHDIAGLVRGAHE---G---Q---GLGNSFLSHIRAVD--------------GIFHVLRAFE------ 130 (406)
Q Consensus 81 ~p~~~-~~~~i~lvD~~gl~~~~~~---~---~---~l~~~~l~~l~~ad--------------~ll~vvda~~------ 130 (406)
.||.. ....+++.|...+...... . . ......++.+...+ ..+.+++++.
T Consensus 88 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~ 167 (272)
T PRK13547 88 LPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPH 167 (272)
T ss_pred ecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcccccc
Confidence 56552 2223444443322110000 0 0 00000111110000 1134455553
Q ss_pred ----CCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 131 ----DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 131 ----~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+|+++++| ||++.+|....+.....+..+. ......+.. .+|+...+..+|+++ .+|.+|+++..++
T Consensus 168 ~~~~~p~lllLD---EPt~~LD~~~~~~l~~~l~~~~---~~~~~tvii-isH~~~~~~~~~d~i-~~l~~G~i~~~g~ 238 (272)
T PRK13547 168 DAAQPPRYLLLD---EPTAALDLAHQHRLLDTVRRLA---RDWNLGVLA-IVHDPNLAARHADRI-AMLADGAIVAHGA 238 (272)
T ss_pred ccCCCCCEEEEc---CccccCCHHHHHHHHHHHHHHH---HhcCCEEEE-EECCHHHHHHhCCEE-EEEECCeEEEecC
Confidence 89999999 9999999998644433222111 100111111 139999999999999 7889998876654
No 193
>COG2262 HflX GTPases [General function prediction only]
Probab=99.29 E-value=1.8e-11 Score=120.95 Aligned_cols=87 Identities=32% Similarity=0.536 Sum_probs=73.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
..|+|+|-+|||||||||+|||..+.+.+..|+|++|+.-.+.+++.+ .+.+.||+|++.....
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~----------------~vlLtDTVGFI~~LP~ 256 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGR----------------KVLLTDTVGFIRDLPH 256 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCc----------------eEEEecCccCcccCCh
Confidence 689999999999999999999998888999999999999999998632 4889999999976542
Q ss_pred CCCCcchh---hhhHHhhhchhhhhccc
Q 015465 105 GQGLGNSF---LSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 105 ~~~l~~~~---l~~l~~ad~ll~vvda~ 129 (406)
.+...| ++....+|+++||||++
T Consensus 257 --~LV~AFksTLEE~~~aDlllhVVDaS 282 (411)
T COG2262 257 --PLVEAFKSTLEEVKEADLLLHVVDAS 282 (411)
T ss_pred --HHHHHHHHHHHHhhcCCEEEEEeecC
Confidence 344455 45557899999999996
No 194
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.2e-12 Score=136.90 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=101.1
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------hhhccCCCC---
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKSA--- 85 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~p~~~--- 85 (406)
....+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++... ...|.||..
T Consensus 272 isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 340 (501)
T PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGA-----------TRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAE 340 (501)
T ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC-----------CcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhC
Confidence 3346789999999999999999999999999 678999999988654211 123555542
Q ss_pred -cCceeEEEeecccccccc---------C--CCCCcchhhhhHHhh-h--------------chhhhhccc-CCCceEee
Q 015465 86 -VPAFLEIHDIAGLVRGAH---------E--GQGLGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDIIHV 137 (406)
Q Consensus 86 -~~~~i~lvD~~gl~~~~~---------~--~~~l~~~~l~~l~~a-d--------------~ll~vvda~-~~~~il~l 137 (406)
....+++.|...+..... . .......++..+... + -.+.+++++ .+|+++++
T Consensus 341 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 341 GIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred CCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEE
Confidence 222233333322110000 0 000001111111110 0 014455666 78999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 138 d~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
| ||++++|+...+.....+..+ ......+.. .+|+...+..+|+++ ..+.+|+++..+..
T Consensus 421 D---EPt~~LD~~~~~~l~~~l~~l----~~~g~tvii-vsHd~~~~~~~~d~i-~~l~~g~i~~~~~~ 480 (501)
T PRK11288 421 D---EPTRGIDVGAKHEIYNVIYEL----AAQGVAVLF-VSSDLPEVLGVADRI-VVMREGRIAGELAR 480 (501)
T ss_pred c---CCCCCCCHhHHHHHHHHHHHH----HhCCCEEEE-ECCCHHHHHhhCCEE-EEEECCEEEEEEcc
Confidence 9 999999999864443322111 100111101 139999999999999 78899988766543
No 195
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.28 E-value=6e-12 Score=111.44 Aligned_cols=88 Identities=40% Similarity=0.725 Sum_probs=71.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
.|+|+|++|||||||+|.|++....++.+|++|..|+.|.+.+.+. ..+.++||||+.......
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG----------------RSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC----------------CeEEEEecCcccCccccc
Confidence 4899999999999999999998777788999999999999887653 248999999986544433
Q ss_pred CCCcchhhhhHHhhhchhhhhccc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
..+...+++.++.+|++++|+|+.
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~ 89 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLS 89 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecC
Confidence 345556667777899999988875
No 196
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=1.1e-12 Score=137.30 Aligned_cols=172 Identities=13% Similarity=0.153 Sum_probs=101.8
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCC--ceeEEEcCCcchhhh--------hhhccCCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEWL--------CQLFKPKS 84 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p--~~G~i~v~g~~~~~l--------~~~~~p~~ 84 (406)
.+....+.+|++++|+||||||||||+++|+|. ..| ++|.|.++|.++... ...|.+|.
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 90 (506)
T PRK13549 22 DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV-----------YPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQE 90 (506)
T ss_pred cceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEec
Confidence 344556789999999999999999999999998 454 799999988765211 12355554
Q ss_pred -CcCceeEEEeecccccccc-----CCC---CCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCC
Q 015465 85 -AVPAFLEIHDIAGLVRGAH-----EGQ---GLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~~~~~-----~~~---~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~ 140 (406)
..+..+++.|...+..... ... .....+++.+... .-.+.+++++ .+|+++++|
T Consensus 91 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD-- 168 (506)
T PRK13549 91 LALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILD-- 168 (506)
T ss_pred cccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 2222334444332211000 000 0000011111100 0014455555 699999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
||++.+|..........+..+ .+....+ .-.+|+...+..+||++ .+|++|+++..++.
T Consensus 169 -EPt~~LD~~~~~~l~~~l~~l----~~~~~tv-i~~tH~~~~~~~~~d~v-~~l~~G~i~~~~~~ 227 (506)
T PRK13549 169 -EPTASLTESETAVLLDIIRDL----KAHGIAC-IYISHKLNEVKAISDTI-CVIRDGRHIGTRPA 227 (506)
T ss_pred -CCCCCCCHHHHHHHHHHHHHH----HHCCCEE-EEEeCcHHHHHHhcCEE-EEEECCEEeeeccc
Confidence 999999999864443322211 0001111 11239999999999999 88999998766543
No 197
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.28 E-value=2.2e-12 Score=123.30 Aligned_cols=171 Identities=19% Similarity=0.280 Sum_probs=98.2
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcc-----hhhh-----------hhh
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-----FEWL-----------CQL 79 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~-----~~~l-----------~~~ 79 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.+ +... ...
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~ 92 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSAR-----------LAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWG 92 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCccccccccccCCHHHHHHHhhcceE
Confidence 44556889999999999999999999999999 77999999998876 3211 123
Q ss_pred ccCCCC---cCceeEEEeecccc---ccc-cCC--CCCcchhhhhHHhh---------------hchhhhhccc-CCCce
Q 015465 80 FKPKSA---VPAFLEIHDIAGLV---RGA-HEG--QGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDI 134 (406)
Q Consensus 80 ~~p~~~---~~~~i~lvD~~gl~---~~~-~~~--~~l~~~~l~~l~~a---------------d~ll~vvda~-~~~~i 134 (406)
|.|+.. ....+++.+..... ... ... ......+++.+... .-.+.+++++ .+|++
T Consensus 93 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~l 172 (258)
T PRK11701 93 FVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRL 172 (258)
T ss_pred EEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 555442 11111111111100 000 000 00000011111000 0014455655 79999
Q ss_pred EeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 135 l~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+++| ||++.+|....+.....+..+ .......+ .-.+|+...+..+|+++ .+|++|+++..++
T Consensus 173 lllD---EPt~~LD~~~~~~l~~~l~~~---~~~~~~ti-i~isH~~~~~~~~~d~i-~~l~~g~i~~~~~ 235 (258)
T PRK11701 173 VFMD---EPTGGLDVSVQARLLDLLRGL---VRELGLAV-VIVTHDLAVARLLAHRL-LVMKQGRVVESGL 235 (258)
T ss_pred EEEc---CCcccCCHHHHHHHHHHHHHH---HHhcCcEE-EEEeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 9999 999999998864433322111 01001111 11139999999999998 8889998876553
No 198
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=3.1e-12 Score=120.31 Aligned_cols=167 Identities=19% Similarity=0.229 Sum_probs=97.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----h--hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~p~~~~~~ 88 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|..+... . ..|.++.....
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (234)
T cd03251 20 DISLDIPAGETVALVGPSGSGKSTLVNLIPRF-----------YDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLF 88 (234)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------ccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeec
Confidence 44456889999999999999999999999999 679999999998765321 1 13455442111
Q ss_pred eeEEEeeccccccccCCCC--------CcchhhhhH---------------H-hhhchhhhhccc-CCCceEeecCCCCC
Q 015465 89 FLEIHDIAGLVRGAHEGQG--------LGNSFLSHI---------------R-AVDGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~--------l~~~~l~~l---------------~-~ad~ll~vvda~-~~~~il~ld~~~dP 143 (406)
..++.|...+......... ....++..+ . .....+.+++++ .+|+++++| ||
T Consensus 89 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD---EP 165 (234)
T cd03251 89 NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILD---EA 165 (234)
T ss_pred cccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---Cc
Confidence 1233332222111000000 000000000 0 001114455555 689999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
++++|....+.....+..+ .+ ...+.. .+|+...+.. |+++ ..|.+|++...+
T Consensus 166 ~~~LD~~~~~~l~~~l~~~----~~-~~tii~-~sh~~~~~~~-~d~v-~~l~~G~i~~~~ 218 (234)
T cd03251 166 TSALDTESERLVQAALERL----MK-NRTTFV-IAHRLSTIEN-ADRI-VVLEDGKIVERG 218 (234)
T ss_pred cccCCHHHHHHHHHHHHHh----cC-CCEEEE-EecCHHHHhh-CCEE-EEecCCeEeeeC
Confidence 9999999865443322111 10 111111 1388888865 9998 888889877554
No 199
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=6.8e-13 Score=127.83 Aligned_cols=171 Identities=14% Similarity=0.128 Sum_probs=99.4
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----h--hhccCCCC--
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA-- 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~p~~~-- 85 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.|+..
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 94 (271)
T PRK13632 26 KNVSFEINEGEYVAILGHNGSGKSTISKILTGL-----------LKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDN 94 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHH
Confidence 334456889999999999999999999999999 679999999998765321 1 13555542
Q ss_pred cCceeEEEeecccccccc--CCCC---CcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCc
Q 015465 86 VPAFLEIHDIAGLVRGAH--EGQG---LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~--~~~~---l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
.....++.|...+..... .... ....+++.+... .-.+.+++++ .+|+++++| ||++
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---EP~~ 171 (271)
T PRK13632 95 QFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFD---ESTS 171 (271)
T ss_pred hcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcc
Confidence 222234444332211000 0000 000111111000 0114456666 789999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.+|....+.....+..+. ..-...+.. .+|+...+. .|+++ .+|.+|++...++
T Consensus 172 gLD~~~~~~l~~~l~~~~---~~~~~tiii-~sH~~~~~~-~~d~v-~~l~~G~i~~~g~ 225 (271)
T PRK13632 172 MLDPKGKREIKKIMVDLR---KTRKKTLIS-ITHDMDEAI-LADKV-IVFSEGKLIAQGK 225 (271)
T ss_pred cCCHHHHHHHHHHHHHHH---HhcCcEEEE-EEechhHHh-hCCEE-EEEECCEEEEecC
Confidence 999988644433221110 000011111 138888775 79988 7889998876553
No 200
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.28 E-value=2.5e-12 Score=119.49 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=88.2
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----hhhccCCC-CcCce
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKS-AVPAF 89 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~~~~~p~~-~~~~~ 89 (406)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.++. ..+..
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~ 96 (214)
T PRK13543 28 GPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL-----------LHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKAD 96 (214)
T ss_pred ecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCCeeEEECCEEccchhhhhceEEeecCcccccC
Confidence 344456889999999999999999999999999 679999999998754321 12344443 12222
Q ss_pred eEEEeecccccccc--CCCCCcchhhhhHHh--------------hhchhhhhccc-CCCceEeecCCCCCCchHHHHHH
Q 015465 90 LEIHDIAGLVRGAH--EGQGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (406)
Q Consensus 90 i~lvD~~gl~~~~~--~~~~l~~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~ 152 (406)
+++.|...+..... ........++..+.. ....+.+++++ .+|+++++| ||++++|....
T Consensus 97 ~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~ 173 (214)
T PRK13543 97 LSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLD---EPYANLDLEGI 173 (214)
T ss_pred CcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHH
Confidence 23333221110000 000000011111100 01113455555 799999999 99999999986
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHH
Q 015465 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRV 191 (406)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i 191 (406)
+.....+..+.+ . ...+ .-.+|+...+..+|+++
T Consensus 174 ~~l~~~l~~~~~---~-~~ti-ii~sH~~~~~~~~~~~i 207 (214)
T PRK13543 174 TLVNRMISAHLR---G-GGAA-LVTTHGAYAAPPVRTRM 207 (214)
T ss_pred HHHHHHHHHHHh---C-CCEE-EEEecChhhhhhhcceE
Confidence 443332211100 0 0111 01138888888888876
No 201
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.28 E-value=1.2e-12 Score=129.67 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=103.2
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh----------hhccCCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLFKPKS 84 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~----------~~~~p~~ 84 (406)
.+..-.+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++..+. ..|.+|.
T Consensus 38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl-----------~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~ 106 (331)
T PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGL-----------VKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQD 106 (331)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecC
Confidence 344556789999999999999999999999999 6789999999998653221 1344444
Q ss_pred C---cCceeEEEeeccccc-----cccCC--CCCcchhhhhHHh-h---h-----------chhhhhccc-CCCceEeec
Q 015465 85 A---VPAFLEIHDIAGLVR-----GAHEG--QGLGNSFLSHIRA-V---D-----------GIFHVLRAF-EDPDIIHVD 138 (406)
Q Consensus 85 ~---~~~~i~lvD~~gl~~-----~~~~~--~~l~~~~l~~l~~-a---d-----------~ll~vvda~-~~~~il~ld 138 (406)
. ....+++.|...... ..... ......+++.+.. . + -.+.+++|+ .+|+++++|
T Consensus 107 ~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilD 186 (331)
T PRK15079 107 PLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICD 186 (331)
T ss_pred chhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2 222334333322110 00000 0000001111111 0 0 014455665 799999999
Q ss_pred CCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 139 ~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|......++.-+..+.+ .....+ .-.+|++..+..+|+++ .+|..|+++..++
T Consensus 187 ---EPts~LD~~~~~~i~~lL~~l~~---~~~~ti-l~iTHdl~~~~~~~dri-~vl~~G~ive~g~ 245 (331)
T PRK15079 187 ---EPVSALDVSIQAQVVNLLQQLQR---EMGLSL-IFIAHDLAVVKHISDRV-LVMYLGHAVELGT 245 (331)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHHH---HcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 99999999986444333221111 001111 11239999999999999 8899999876654
No 202
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.4e-12 Score=124.25 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=99.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------h--hhhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------L--CQLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l--~~~~~p~~~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|.... .| ..|++|.|.++|.++.. + ...|.+|...
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 24 DISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDL---IP---GARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred ceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhccc---CC---CCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 44456889999999999999999999999998210 00 12578999998876531 1 1235555521
Q ss_pred CceeEEEeecccccccc---CCCCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeecCCC
Q 015465 87 PAFLEIHDIAGLVRGAH---EGQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~---~~~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld~~~ 141 (406)
....++.|...+..... .......+....++..+ -.+.+++++ .+|+++++|
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllD--- 174 (253)
T PRK14242 98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMD--- 174 (253)
T ss_pred CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 11123333332210000 00000000000011000 014455665 789999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|....+.....+..+ .. ...+.. .+|+...+..+|+++ .+|++|++...++
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~----~~-~~tvii-~tH~~~~~~~~~d~v-~~l~~G~i~~~g~ 231 (253)
T PRK14242 175 EPASALDPIATQKIEELIHEL----KA-RYTIII-VTHNMQQAARVSDVT-AFFYMGKLIEVGP 231 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHH----hc-CCeEEE-EEecHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999998864443332211 11 111111 239999999999999 8889998876543
No 203
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.28 E-value=2.9e-12 Score=121.15 Aligned_cols=172 Identities=15% Similarity=0.086 Sum_probs=95.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------h--hhccCCCC-c
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSA-V 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~p~~~-~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|... ..|++|.|.++|.++... . ..|.+|.. .
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (243)
T TIGR01978 18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS---------YEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEE 88 (243)
T ss_pred ccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCcceEEECCEecCCCCHHHhhccceEeeeccccc
Confidence 4456688999999999999999999999999820 158899999988754221 1 12444442 1
Q ss_pred CceeEEEeeccccccc----------cCC--CCCcchhhhh---------------HH-hhhchhhhhccc-CCCceEee
Q 015465 87 PAFLEIHDIAGLVRGA----------HEG--QGLGNSFLSH---------------IR-AVDGIFHVLRAF-EDPDIIHV 137 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~----------~~~--~~l~~~~l~~---------------l~-~ad~ll~vvda~-~~~~il~l 137 (406)
....++.|...+.... ... .......++. +. .-.-.+.+++++ .+|+++++
T Consensus 89 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 168 (243)
T TIGR01978 89 IPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAIL 168 (243)
T ss_pred cCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 1112222111100000 000 0000000000 00 000113344554 68999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHH-HHHHHHHhhCCCccccCC
Q 015465 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHEL-CQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 138 d~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l-~~~i~~~L~~g~~~~~~~ 205 (406)
| ||++.+|....+.....+..+ .+-...+ .-.+|+...+..+ |+++ .+|++|++...++
T Consensus 169 D---EPt~~LD~~~~~~l~~~l~~~----~~~~~tv-i~vsH~~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (243)
T TIGR01978 169 D---EIDSGLDIDALKIVAEGINRL----REPDRSF-LIITHYQRLLNYIKPDYV-HVLLDGRIVKSGD 228 (243)
T ss_pred c---CCcccCCHHHHHHHHHHHHHH----HHCCcEE-EEEEecHHHHHhhcCCeE-EEEeCCEEEEecC
Confidence 9 999999999864443322111 0000111 1113999998888 7998 7888998876553
No 204
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=2.2e-12 Score=122.42 Aligned_cols=170 Identities=15% Similarity=0.199 Sum_probs=100.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------hhhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~~~~~p~~~~~~ 88 (406)
+....+.+|++++|+|+||||||||+++|+|...+ ..|++|.|.++|.++... ...|.||.....
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~ 91 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDK--------IAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--------CCCCceEEEECCEecccCCHHHHhhhEEEEecCCccc
Confidence 44566889999999999999999999999998210 136899999998765321 124556552111
Q ss_pred eeEEEeeccccccccC----CCC---CcchhhhhHHh------------------hhchhhhhccc-CCCceEeecCCCC
Q 015465 89 FLEIHDIAGLVRGAHE----GQG---LGNSFLSHIRA------------------VDGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~----~~~---l~~~~l~~l~~------------------ad~ll~vvda~-~~~~il~ld~~~d 142 (406)
..++.|...+...... ... .....++.+.. -...+.+++++ .+|+++++| |
T Consensus 92 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---E 168 (246)
T PRK14269 92 VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLD---E 168 (246)
T ss_pred cccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---C
Confidence 1344444322110000 000 00011111110 00014456666 799999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++.+|.......... +..+. ..+ .-.+|+...+..+||++ .+|.+|++...++
T Consensus 169 P~~~LD~~~~~~l~~~-------l~~~~~~~ti-ii~tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 224 (246)
T PRK14269 169 PTSALDPISSGVIEEL-------LKELSHNLSM-IMVTHNMQQGKRVADYT-AFFHLGELIEFGE 224 (246)
T ss_pred CcccCCHHHHHHHHHH-------HHHHhCCCEE-EEEecCHHHHHhhCcEE-EEEECCEEEEECC
Confidence 9999999875333222 22211 111 11139999999999999 8889998876543
No 205
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.9e-12 Score=123.34 Aligned_cols=175 Identities=15% Similarity=0.136 Sum_probs=100.2
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh--h-----h--hhhccCCC-
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--W-----L--CQLFKPKS- 84 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~--~-----l--~~~~~p~~- 84 (406)
.+....+.+|++++|+|+||||||||+++|+|...+ ....|++|.|.++|.++. . + ...|.+|.
T Consensus 21 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~------~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (253)
T PRK14267 21 KGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLEL------NEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94 (253)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc------ccCCCCceEEEECCEEccccccChHHHhhceeEEecCC
Confidence 344556889999999999999999999999999210 000135999999887653 1 1 11355554
Q ss_pred CcCceeEEEeeccccccccC----CCCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeec
Q 015465 85 AVPAFLEIHDIAGLVRGAHE----GQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVD 138 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~~~~----~~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld 138 (406)
.....+++.+...+...... .........+.++..+ -.+.+++++ .+|+++++|
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 174 (253)
T PRK14267 95 NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMD 174 (253)
T ss_pred ccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 22223344443322110000 0000000001111110 114456666 799999999
Q ss_pred CCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 139 ~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|....+.....+..+ .. ...+ .-.+|+...+..+||++ .+|.+|++...++
T Consensus 175 ---EP~~~LD~~~~~~l~~~l~~~----~~-~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 231 (253)
T PRK14267 175 ---EPTANIDPVGTAKIEELLFEL----KK-EYTI-VLVTHSPAQAARVSDYV-AFLYLGKLIEVGP 231 (253)
T ss_pred ---CCCccCCHHHHHHHHHHHHHH----hh-CCEE-EEEECCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 999999998764433322111 10 1111 11239999999999999 8889998876544
No 206
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=1.2e-12 Score=129.19 Aligned_cols=171 Identities=16% Similarity=0.108 Sum_probs=100.3
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------------------
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------------------ 76 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------------------ 76 (406)
.+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++...
T Consensus 43 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~ 111 (320)
T PRK13631 43 NNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL-----------IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNF 111 (320)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEECCEEcccccccccccccccccccchH
Confidence 344556789999999999999999999999999 789999999988654211
Q ss_pred ---h--hhccCCCC--cCceeEEEeeccccccccC-C-C---CCcchhhhhHHhh---------------hchhhhhccc
Q 015465 77 ---C--QLFKPKSA--VPAFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAV---------------DGIFHVLRAF 129 (406)
Q Consensus 77 ---~--~~~~p~~~--~~~~i~lvD~~gl~~~~~~-~-~---~l~~~~l~~l~~a---------------d~ll~vvda~ 129 (406)
. ..|.+|.. .....++.|...+...... . . .....++..+... .-.+.+++++
T Consensus 112 ~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL 191 (320)
T PRK13631 112 KELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGIL 191 (320)
T ss_pred HHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 1 12444431 0111122222211100000 0 0 0000111111100 0014455665
Q ss_pred -CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 130 -EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 130 -~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.+|+++++| ||++.+|..........+..+ ..-...+ .-.+|+++.+..+|+++ .+|.+|+++..|+
T Consensus 192 ~~~p~iLLLD---EPtsgLD~~~~~~l~~~L~~l----~~~g~Ti-iivtHd~~~~~~~adri-~vl~~G~i~~~g~ 259 (320)
T PRK13631 192 AIQPEILIFD---EPTAGLDPKGEHEMMQLILDA----KANNKTV-FVITHTMEHVLEVADEV-IVMDKGKILKTGT 259 (320)
T ss_pred HcCCCEEEEE---CCccCCCHHHHHHHHHHHHHH----HHCCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 799999999 999999999864443322111 1001111 11239999999999999 8999999887764
No 207
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.5e-12 Score=124.14 Aligned_cols=169 Identities=17% Similarity=0.194 Sum_probs=100.2
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCC-----ceeEEEcCCcchhh-------hh--hhcc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------LC--QLFK 81 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p-----~~G~i~v~g~~~~~-------l~--~~~~ 81 (406)
+....+.+|++++|+|+||||||||+++|+|. ..| ++|.|.++|.++.. .. ..|.
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 93 (254)
T PRK14273 25 NINIKILKNSITALIGPSGCGKSTFLRTLNRM-----------NDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMV 93 (254)
T ss_pred ceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------ccCCcCCCCceEEEECCEecccccccHHHHhhceEEE
Confidence 44556889999999999999999999999999 343 58999998876421 11 2355
Q ss_pred CCCCcCceeEEEeeccccccccC--C-CCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEe
Q 015465 82 PKSAVPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIH 136 (406)
Q Consensus 82 p~~~~~~~i~lvD~~gl~~~~~~--~-~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ 136 (406)
+|.......++.|...+...... . ..........++.++ ..+.+++++ .+|++++
T Consensus 94 ~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 173 (254)
T PRK14273 94 FQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVIL 173 (254)
T ss_pred eeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 55522112344443322110000 0 000000001111100 114456666 7999999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+| ||++.+|....+.....+..+ .. ...+ .-.+|+...+..+|+++ .+|.+|+++..++
T Consensus 174 LD---EPt~~LD~~~~~~l~~~l~~~----~~-~~tv-ii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 232 (254)
T PRK14273 174 MD---EPTSALDPISTGKIEELIINL----KE-SYTI-IIVTHNMQQAGRISDRT-AFFLNGCIEEESS 232 (254)
T ss_pred Ee---CCCcccCHHHHHHHHHHHHHH----hc-CCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99 999999998865443322211 10 1111 11239999999999999 7889998876554
No 208
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.5e-12 Score=136.36 Aligned_cols=168 Identities=16% Similarity=0.194 Sum_probs=100.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh------h--hhhccCCC---
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------L--CQLFKPKS--- 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------l--~~~~~p~~--- 84 (406)
+..-.+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++.. + ...|.||.
T Consensus 281 ~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 349 (510)
T PRK09700 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFGV-----------DKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRD 349 (510)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CcCCCCeEEECCEECCCCCHHHHHHCCcEEccCcccc
Confidence 34455789999999999999999999999999 67999999998865421 1 12466664
Q ss_pred -CcCceeEEEeeccccccc------------cC--CCCCcchhhhhHHhh-h--------------chhhhhccc-CCCc
Q 015465 85 -AVPAFLEIHDIAGLVRGA------------HE--GQGLGNSFLSHIRAV-D--------------GIFHVLRAF-EDPD 133 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~~~~------------~~--~~~l~~~~l~~l~~a-d--------------~ll~vvda~-~~~~ 133 (406)
.....+++.|...+.... .. .......+++.+... + -.+.+++++ .+|+
T Consensus 350 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 429 (510)
T PRK09700 350 NGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPE 429 (510)
T ss_pred CCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCC
Confidence 122233343332221000 00 000000111111110 0 014455565 6899
Q ss_pred eEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcccc
Q 015465 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (406)
Q Consensus 134 il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~ 203 (406)
++++| ||++.+|....+.....+..+.+ -...+.. .+|+...+..+|+++ .+|.+|+++..
T Consensus 430 lLlLD---EPt~~LD~~~~~~l~~~l~~l~~----~g~tvi~-vsHd~~~~~~~~d~i-~~l~~G~i~~~ 490 (510)
T PRK09700 430 VIIFD---EPTRGIDVGAKAEIYKVMRQLAD----DGKVILM-VSSELPEIITVCDRI-AVFCEGRLTQI 490 (510)
T ss_pred EEEEC---CCCCCcCHHHHHHHHHHHHHHHH----CCCEEEE-EcCCHHHHHhhCCEE-EEEECCEEEEE
Confidence 99999 99999999986554443222110 0111111 139999999999998 88888987654
No 209
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=2.1e-12 Score=121.75 Aligned_cols=171 Identities=16% Similarity=0.251 Sum_probs=98.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----hhhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~~~~~p~~-~~~~~ 89 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|+.|.+.++|.++... ...|.++. .....
T Consensus 17 ~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~-----------~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~ 85 (235)
T cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGF-----------IKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPH 85 (235)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCC
Confidence 33456789999999999999999999999999 779999999998765321 11334433 22222
Q ss_pred eEEEeeccccccccC--CCCCc---chhhhhHHh--------------hhchhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAHE--GQGLG---NSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~~--~~~l~---~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
.++.|...+...... ..... ..++..+.. ...-+.++++. .+|+++++| ||++++|.
T Consensus 86 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~gLD~ 162 (235)
T cd03299 86 MTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLD---EPFSALDV 162 (235)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEC---CCcccCCH
Confidence 333333322110000 00000 000000000 00114455555 799999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
...+....-+..+ .......+ .-.+|+...+.++|+++ ..|.+|+++..++
T Consensus 163 ~~~~~l~~~l~~~---~~~~~~ti-li~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 213 (235)
T cd03299 163 RTKEKLREELKKI---RKEFGVTV-LHVTHDFEEAWALADKV-AIMLNGKLIQVGK 213 (235)
T ss_pred HHHHHHHHHHHHH---HHhcCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 9864332222111 00000111 11139999999999999 7888898875543
No 210
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.26 E-value=3.1e-12 Score=132.02 Aligned_cols=154 Identities=20% Similarity=0.252 Sum_probs=92.1
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh-hhhhhccCCCCcCceeEEEee
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-WLCQLFKPKSAVPAFLEIHDI 95 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~-~l~~~~~p~~~~~~~i~lvD~ 95 (406)
....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.... .....+.+ .+++.|.
T Consensus 43 VSfsI~~GEivgIiGpNGSGKSTLLkiLaGL-----------l~P~sGeI~I~G~~~~i~~~~~l~~------~lTV~En 105 (549)
T PRK13545 43 ISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV-----------TMPNKGTVDIKGSAALIAISSGLNG------QLTGIEN 105 (549)
T ss_pred eEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEeeeEEeccccCC------CCcHHHH
Confidence 4456889999999999999999999999999 7799999999875410 00000111 1111111
Q ss_pred c-------------------------cccc---cccCCCCCcchhhhhHHhhhchhhhhccc-CCCceEeecCCCCCCch
Q 015465 96 A-------------------------GLVR---GAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (406)
Q Consensus 96 ~-------------------------gl~~---~~~~~~~l~~~~l~~l~~ad~ll~vvda~-~~~~il~ld~~~dP~~~ 146 (406)
. ++.. ......+.|+ .++ +.+++++ .+|+++++| ||+++
T Consensus 106 L~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQ--rQR-------VaLArAL~~~P~LLLLD---EPTsg 173 (549)
T PRK13545 106 IELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGM--KSR-------LGFAISVHINPDILVID---EALSV 173 (549)
T ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHH--HHH-------HHHHHHHHhCCCEEEEE---CCccc
Confidence 1 1100 0000000111 122 3344444 599999999 99999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+|+.........+..+ ..-...+ .-.+|+...+..+|+++ .+|.+|++...++
T Consensus 174 LD~~sr~~LlelL~el----~~~G~TI-IIVSHdl~~i~~l~DrI-ivL~~GkIv~~G~ 226 (549)
T PRK13545 174 GDQTFTKKCLDKMNEF----KEQGKTI-FFISHSLSQVKSFCTKA-LWLHYGQVKEYGD 226 (549)
T ss_pred CCHHHHHHHHHHHHHH----HhCCCEE-EEEECCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9998764433322111 0000111 11139999999999999 8889998876654
No 211
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.26 E-value=1.5e-12 Score=135.97 Aligned_cols=170 Identities=12% Similarity=0.175 Sum_probs=101.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh------h--hhhccCCCC--
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------L--CQLFKPKSA-- 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------l--~~~~~p~~~-- 85 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.. . ...|.||..
T Consensus 270 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~ 338 (501)
T PRK10762 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGA-----------LPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKR 338 (501)
T ss_pred cceEEEcCCcEEEEecCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHHHHCCCEEecCcccc
Confidence 33446789999999999999999999999999 77999999999865421 1 124666652
Q ss_pred --cCceeEEEeeccccc--c-------cc--CCCCCcchhhhhHHh---------------hhchhhhhccc-CCCceEe
Q 015465 86 --VPAFLEIHDIAGLVR--G-------AH--EGQGLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIH 136 (406)
Q Consensus 86 --~~~~i~lvD~~gl~~--~-------~~--~~~~l~~~~l~~l~~---------------ad~ll~vvda~-~~~~il~ 136 (406)
....+++.+...+.. . .. ........++..+.. -.-.+.+++++ .+|++++
T Consensus 339 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lll 418 (501)
T PRK10762 339 DGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLI 418 (501)
T ss_pred CCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 222333333222110 0 00 000000011111110 00114455555 6899999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+| ||++.+|....+.....+..+.+ . ...+.. .+|+...+..+|+++ .+|.+|+++..++
T Consensus 419 LD---EPt~~LD~~~~~~l~~~l~~~~~---~-g~tvii-vtHd~~~~~~~~d~v-~~l~~G~i~~~~~ 478 (501)
T PRK10762 419 LD---EPTRGVDVGAKKEIYQLINQFKA---E-GLSIIL-VSSEMPEVLGMSDRI-LVMHEGRISGEFT 478 (501)
T ss_pred Ec---CCCCCCCHhHHHHHHHHHHHHHH---C-CCEEEE-EcCCHHHHHhhCCEE-EEEECCEEEEEec
Confidence 99 99999999986444332221110 0 111111 139999999999999 8889998876543
No 212
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=2.7e-12 Score=122.18 Aligned_cols=174 Identities=16% Similarity=0.141 Sum_probs=99.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|...+. ...|++|.|.++|.++.. .. ..|.||...
T Consensus 22 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~------~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 22 DINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLI------SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcc------cCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 344567899999999999999999999999982100 001378999998876531 11 245565532
Q ss_pred CceeEEEeeccccccccC--CC-C---CcchhhhhHHh-------hh-----------chhhhhccc-CCCceEeecCCC
Q 015465 87 PAFLEIHDIAGLVRGAHE--GQ-G---LGNSFLSHIRA-------VD-----------GIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~--~~-~---l~~~~l~~l~~-------ad-----------~ll~vvda~-~~~~il~ld~~~ 141 (406)
....++.|...+...... .. . ....+++.+.. .+ -.+.+++++ .+|+++++|
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD--- 172 (251)
T PRK14270 96 PFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMD--- 172 (251)
T ss_pred cCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 112344443322110000 00 0 00011111100 00 113455555 789999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|.........-+.. +.+ ...+ .-.+|+...+..+|+++ .+|++|+++..++
T Consensus 173 EP~~~LD~~~~~~l~~~L~~----~~~-~~ti-iivsH~~~~~~~~~d~v-~~l~~G~i~~~~~ 229 (251)
T PRK14270 173 EPTSALDPISTLKIEDLMVE----LKK-EYTI-VIVTHNMQQASRVSDYT-AFFLMGDLIEFNK 229 (251)
T ss_pred CCcccCCHHHHHHHHHHHHH----HHh-CCeE-EEEEcCHHHHHHhcCEE-EEEECCeEEEeCC
Confidence 99999999876443332211 111 1111 11239999999999999 8889998876543
No 213
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.26 E-value=3.7e-12 Score=120.10 Aligned_cols=167 Identities=16% Similarity=0.207 Sum_probs=97.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------hhhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~~~~~p~~~~~~ 88 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.++.....
T Consensus 21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (238)
T cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERF-----------YDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLF 89 (238)
T ss_pred ceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhh
Confidence 44456889999999999999999999999999 679999999998765321 123455542111
Q ss_pred eeEEEeeccccccccCCC---------CCcchhhhh---------------HH-hhhchhhhhccc-CCCceEeecCCCC
Q 015465 89 FLEIHDIAGLVRGAHEGQ---------GLGNSFLSH---------------IR-AVDGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~---------~l~~~~l~~---------------l~-~ad~ll~vvda~-~~~~il~ld~~~d 142 (406)
..++.|...+........ ++ ..++.. +. ...-.+.++++. .+|+++++| |
T Consensus 90 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---E 165 (238)
T cd03249 90 DGTIAENIRYGKPDATDEEVEEAAKKANI-HDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLD---E 165 (238)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcCh-HHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 123333322211000000 00 000000 00 000113455555 689999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++++|....+.....+..+ . -...+.. .+|+...+. .||++ .+|.+|++...++
T Consensus 166 P~~gLD~~~~~~l~~~l~~~----~-~g~~vi~-~sh~~~~~~-~~d~v-~~l~~G~i~~~~~ 220 (238)
T cd03249 166 ATSALDAESEKLVQEALDRA----M-KGRTTIV-IAHRLSTIR-NADLI-AVLQNGQVVEQGT 220 (238)
T ss_pred ccccCCHHHHHHHHHHHHHh----c-CCCEEEE-EeCCHHHHh-hCCEE-EEEECCEEEEeCC
Confidence 99999999864433322111 0 0011101 138888886 89998 8889998776543
No 214
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.26 E-value=3.5e-12 Score=133.58 Aligned_cols=168 Identities=13% Similarity=0.161 Sum_probs=98.4
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------hhhccCCCC---
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKSA--- 85 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~p~~~--- 85 (406)
....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.||..
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~ 350 (510)
T PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGL-----------RPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSS 350 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhC
Confidence 3446789999999999999999999999999 678999999988654221 124566541
Q ss_pred -cCceeEEEeecc--------ccccccCCCCCcchhhhhHHhh----h-----------chhhhhccc-CCCceEeecCC
Q 015465 86 -VPAFLEIHDIAG--------LVRGAHEGQGLGNSFLSHIRAV----D-----------GIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 86 -~~~~i~lvD~~g--------l~~~~~~~~~l~~~~l~~l~~a----d-----------~ll~vvda~-~~~~il~ld~~ 140 (406)
.+..+++.+..- ..............++..+... + -.+.++++. .+|+++++|
T Consensus 351 ~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLD-- 428 (510)
T PRK15439 351 GLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVD-- 428 (510)
T ss_pred CccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEEC--
Confidence 222222222110 0000000000000111111000 0 013455555 689999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
||++++|+...+.....+..+.+ ....+.. .+|+...+..+||++ .+|.+|+++..+
T Consensus 429 -EPt~gLD~~~~~~l~~~l~~l~~----~g~tiIi-vsHd~~~i~~~~d~i-~~l~~G~i~~~~ 485 (510)
T PRK15439 429 -EPTRGVDVSARNDIYQLIRSIAA----QNVAVLF-ISSDLEEIEQMADRV-LVMHQGEISGAL 485 (510)
T ss_pred -CCCcCcChhHHHHHHHHHHHHHh----CCCEEEE-ECCCHHHHHHhCCEE-EEEECCEEEEEE
Confidence 99999999986544333221110 0111111 139999999999999 788999887654
No 215
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=2.2e-12 Score=124.06 Aligned_cols=170 Identities=12% Similarity=0.046 Sum_probs=96.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----h--hhccCCCC--c
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA--V 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~p~~~--~ 86 (406)
+....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.++.. .
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI-----------EKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQ 95 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHh
Confidence 44566789999999999999999999999999 779999999998765221 1 13444432 1
Q ss_pred CceeEEEeecccccccc--CCCCC---cchhhhhHHh--------------hhchhhhhccc-CCCceEeecCCCCCCch
Q 015465 87 PAFLEIHDIAGLVRGAH--EGQGL---GNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~--~~~~l---~~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ 146 (406)
....++.+...+..... ..... ...+++.+.. -.-.+.+++++ .+|+++++| ||++.
T Consensus 96 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---EPt~~ 172 (269)
T PRK13648 96 FVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD---EATSM 172 (269)
T ss_pred cccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCccc
Confidence 11111111111110000 00000 0000000000 00114455665 799999999 99999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+|....+.....+..+ .......+ .-.+|+...+.. |+++ .+|++|++...++
T Consensus 173 LD~~~~~~l~~~L~~~---~~~~~~ti-iivtH~~~~~~~-~d~i-~~l~~G~i~~~g~ 225 (269)
T PRK13648 173 LDPDARQNLLDLVRKV---KSEHNITI-ISITHDLSEAME-ADHV-IVMNKGTVYKEGT 225 (269)
T ss_pred CCHHHHHHHHHHHHHH---HHhcCCEE-EEEecCchHHhc-CCEE-EEEECCEEEEecC
Confidence 9999865443322111 00000111 111388888765 9998 8889998876654
No 216
>PLN03211 ABC transporter G-25; Provisional
Probab=99.26 E-value=6.9e-12 Score=134.75 Aligned_cols=171 Identities=15% Similarity=0.187 Sum_probs=102.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCC--ceeEEEcCCcchhhh---hhhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEWL---CQLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p--~~G~i~v~g~~~~~l---~~~~~p~~-~~~~~ 89 (406)
+..+.+++|+.+||+||||||||||+++|+|. ..| .+|.|.++|.++... ...|.+|. .....
T Consensus 86 ~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~-----------~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~ 154 (659)
T PLN03211 86 GVTGMASPGEILAVLGPSGSGKSTLLNALAGR-----------IQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPH 154 (659)
T ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHhCC-----------CCCCceeEEEEECCEECchhhccceEEECcccccCCc
Confidence 34567889999999999999999999999998 445 489999999765321 12466665 23334
Q ss_pred eEEEeeccccccccCCCC--------CcchhhhhHHhh---h----------------chhhhhccc-CCCceEeecCCC
Q 015465 90 LEIHDIAGLVRGAHEGQG--------LGNSFLSHIRAV---D----------------GIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~~--------l~~~~l~~l~~a---d----------------~ll~vvda~-~~~~il~ld~~~ 141 (406)
+++.|+..+......... ....+++.+... | -.+.++++. .+|+++++|
T Consensus 155 lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD--- 231 (659)
T PLN03211 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD--- 231 (659)
T ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe---
Confidence 555555433211000000 000111111100 0 012334444 689999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchH-HHHHHHHHHHHHhhCCCccccCCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK-IEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~-~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
||++++|..........+.. +.+-.+.+.. .+|+.. .+.+++|++ .+|.+|++++.|+.
T Consensus 232 EPtsgLD~~~~~~l~~~L~~----l~~~g~TvI~-~sH~~~~~i~~~~D~i-ilL~~G~iv~~G~~ 291 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGS----LAQKGKTIVT-SMHQPSSRVYQMFDSV-LVLSEGRCLFFGKG 291 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHH----HHhCCCEEEE-EecCCCHHHHHhhceE-EEecCCcEEEECCH
Confidence 99999999986433332211 1110111111 138887 578999999 88999999888764
No 217
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=5.9e-12 Score=117.97 Aligned_cols=168 Identities=18% Similarity=0.240 Sum_probs=97.4
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----h--hhccCCCCcC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVP 87 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~p~~~~~ 87 (406)
.+....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.++....
T Consensus 20 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 88 (229)
T cd03254 20 KDINFSIKPGETVAIVGPTGAGKTTLINLLMRF-----------YDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFL 88 (229)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchh
Confidence 345567889999999999999999999999999 678999999998765421 1 2355554211
Q ss_pred ceeEEEeeccccccccCCCCCc--------chhhhh---------------HH-hhhchhhhhccc-CCCceEeecCCCC
Q 015465 88 AFLEIHDIAGLVRGAHEGQGLG--------NSFLSH---------------IR-AVDGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~~~~l~--------~~~l~~---------------l~-~ad~ll~vvda~-~~~~il~ld~~~d 142 (406)
...++.|...+........... ..++.. +. .....+.++++. .+|+++++| |
T Consensus 89 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllD---E 165 (229)
T cd03254 89 FSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILD---E 165 (229)
T ss_pred hhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 1113333222211100000000 000000 00 000114455555 799999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
|++++|....+.....+..+ .. ...+.. .+|+...+. .|+++ ..|.+|++...+
T Consensus 166 P~~~LD~~~~~~l~~~l~~~----~~-~~tii~-~sh~~~~~~-~~d~i-~~l~~g~~~~~~ 219 (229)
T cd03254 166 ATSNIDTETEKLIQEALEKL----MK-GRTSII-IAHRLSTIK-NADKI-LVLDDGKIIEEG 219 (229)
T ss_pred ccccCCHHHHHHHHHHHHHh----cC-CCEEEE-EecCHHHHh-hCCEE-EEEeCCeEEEeC
Confidence 99999999865443322111 10 111111 138888775 58988 888889876544
No 218
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.25 E-value=5.4e-12 Score=118.91 Aligned_cols=168 Identities=19% Similarity=0.241 Sum_probs=98.2
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.||.....
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF-----------YVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLF 88 (237)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhc
Confidence 44456789999999999999999999999999 6789999999997653211 24556553221
Q ss_pred eeEEEeeccccccccCCCCC--------cchhhhhH---------Hhhh-------chhhhhccc-CCCceEeecCCCCC
Q 015465 89 FLEIHDIAGLVRGAHEGQGL--------GNSFLSHI---------RAVD-------GIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l--------~~~~l~~l---------~~ad-------~ll~vvda~-~~~~il~ld~~~dP 143 (406)
..++.|...+.......... ...++..+ +... -.+.+++++ .+|+++++| ||
T Consensus 89 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EP 165 (237)
T cd03252 89 NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD---EA 165 (237)
T ss_pred cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEe---CC
Confidence 22333332221100000000 00000000 0000 113455555 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|....+.....+..+ .. ...+.. .+|+...+. .|+++ .+|.+|+++..++
T Consensus 166 ~~~LD~~~~~~l~~~l~~~----~~-~~tiii-~sH~~~~~~-~~d~v-~~l~~G~i~~~~~ 219 (237)
T cd03252 166 TSALDYESEHAIMRNMHDI----CA-GRTVII-IAHRLSTVK-NADRI-IVMEKGRIVEQGS 219 (237)
T ss_pred cccCCHHHHHHHHHHHHHh----cC-CCEEEE-EeCCHHHHH-hCCEE-EEEECCEEEEEcC
Confidence 9999999864443322111 00 111111 138888875 58988 8888898876553
No 219
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.25 E-value=3e-12 Score=119.23 Aligned_cols=163 Identities=20% Similarity=0.237 Sum_probs=93.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------hhhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~~~~~p~~~~~~ 88 (406)
+....+.+|++++|+||||||||||+++|+|. ..|+.|.|.++|.++... ...|.+|.....
T Consensus 22 ~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (220)
T cd03245 22 NVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL-----------YKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLF 90 (220)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccc
Confidence 34456889999999999999999999999999 678999999998765321 123555542211
Q ss_pred eeEEEeeccccccccCCCCCcchhhhhHHh---h----------------------hchhhhhccc-CCCceEeecCCCC
Q 015465 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRA---V----------------------DGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~---a----------------------d~ll~vvda~-~~~~il~ld~~~d 142 (406)
..++.|...+....... ......+..+.. . .-.+.+++++ .+|+++++| |
T Consensus 91 ~~tv~e~l~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllD---E 166 (220)
T cd03245 91 YGTLRDNITLGAPLADD-ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLD---E 166 (220)
T ss_pred cchHHHHhhcCCCCCCH-HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 12333332221100000 000000000000 0 0113455555 689999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~ 201 (406)
|++++|..........+..+. +. ..+ .-.+|+...+ ++|+++ ..|++|++.
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~---~~--~ti-i~~sH~~~~~-~~~d~v-~~l~~g~i~ 217 (220)
T cd03245 167 PTSAMDMNSEERLKERLRQLL---GD--KTL-IIITHRPSLL-DLVDRI-IVMDSGRIV 217 (220)
T ss_pred ccccCCHHHHHHHHHHHHHhc---CC--CEE-EEEeCCHHHH-HhCCEE-EEEeCCeEe
Confidence 999999998644433221110 00 111 1113888765 688888 777777654
No 220
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.25 E-value=5e-12 Score=121.40 Aligned_cols=161 Identities=20% Similarity=0.275 Sum_probs=91.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCC-CcCceeEEEe
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAFLEIHD 94 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~-~~~~~i~lvD 94 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|... +.++. .+...+++.|
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl-----------~~p~~G~I~~~g~~~------~~~~~~~~~~~~tv~e 104 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGS-----------LSPTVGKVDRNGEVS------VIAISAGLSGQLTGIE 104 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEe------EEecccCCCCCCcHHH
Confidence 44556889999999999999999999999999 678999998887420 00000 0111112222
Q ss_pred ecccc---ccccCC------------CCCcc---hhhhhHHh-hhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHH
Q 015465 95 IAGLV---RGAHEG------------QGLGN---SFLSHIRA-VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAEL 154 (406)
Q Consensus 95 ~~gl~---~~~~~~------------~~l~~---~~l~~l~~-ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el 154 (406)
...+. .+.... .++.. .....+.. ...-+.+++++ .+|+++++| ||++.+|+...+.
T Consensus 105 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLD---EPt~gLD~~~~~~ 181 (264)
T PRK13546 105 NIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVID---EALSVGDQTFAQK 181 (264)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEe---CccccCCHHHHHH
Confidence 11100 000000 00000 00000000 00012344444 699999999 9999999877543
Q ss_pred hhhhHHHHHHHHHHHHH---HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 155 RLKDIEFMERRIEDVEK---SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 155 ~~~di~~l~k~l~~~~~---~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.... +..+.+ .+ .-.+|+...+..+|+++ ..|.+|++...++
T Consensus 182 l~~~-------L~~~~~~g~ti-IiisH~~~~i~~~~d~i-~~l~~G~i~~~g~ 226 (264)
T PRK13546 182 CLDK-------IYEFKEQNKTI-FFVSHNLGQVRQFCTKI-AWIEGGKLKDYGE 226 (264)
T ss_pred HHHH-------HHHHHHCCCEE-EEEcCCHHHHHHHcCEE-EEEECCEEEEeCC
Confidence 3222 222211 11 11139999999999999 8889998876554
No 221
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.25 E-value=2.7e-12 Score=122.86 Aligned_cols=174 Identities=16% Similarity=0.193 Sum_probs=99.5
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|...+ .| ..|++|.|.++|.++.. +. ..|.++...
T Consensus 31 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~p---~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 31 NINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYEL---YP---EQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---CC---CCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 34466789999999999999999999999998210 00 12578999998876521 11 134555421
Q ss_pred CceeEEEeeccccccccCC---CCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeecCCC
Q 015465 87 PAFLEIHDIAGLVRGAHEG---QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~~---~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld~~~ 141 (406)
....++.|...+......+ .....+..+.++.++ -.+.+++++ .+|+++++|
T Consensus 105 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD--- 181 (260)
T PRK10744 105 PFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLD--- 181 (260)
T ss_pred cCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEc---
Confidence 1113333333221100000 000000000111110 014455665 799999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|....+.....+..+ .. ...+ .-.+|+...+..+|+++ .+|++|+++..++
T Consensus 182 EPt~~LD~~~~~~l~~~L~~~----~~-~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 238 (260)
T PRK10744 182 EPCSALDPISTGRIEELITEL----KQ-DYTV-VIVTHNMQQAARCSDYT-AFMYLGELIEFGN 238 (260)
T ss_pred CCCccCCHHHHHHHHHHHHHH----hc-CCeE-EEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999998865443332211 10 1111 11239999999999999 8889998876543
No 222
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.25 E-value=3.8e-12 Score=118.63 Aligned_cols=163 Identities=19% Similarity=0.212 Sum_probs=93.3
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~ 87 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|..+.... ..|.++....
T Consensus 21 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l 89 (221)
T cd03244 21 KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL-----------VELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVL 89 (221)
T ss_pred cceEEEECCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcc
Confidence 344566889999999999999999999999999 6789999999987653211 1345544211
Q ss_pred ceeEEEeeccccccccCCCCCcchhhhhHHh-------------------------hhchhhhhccc-CCCceEeecCCC
Q 015465 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA-------------------------VDGIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~-------------------------ad~ll~vvda~-~~~~il~ld~~~ 141 (406)
...++.|...+...... .. ....++.+.. ..-.+.+++++ .+|+++++|
T Consensus 90 ~~~tv~enl~~~~~~~~-~~-~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD--- 164 (221)
T cd03244 90 FSGTIRSNLDPFGEYSD-EE-LWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLD--- 164 (221)
T ss_pred ccchHHHHhCcCCCCCH-HH-HHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 11222222211110000 00 0000000000 00113455555 799999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCcccc
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~ 203 (406)
||++.+|....+.....+ .++.+ .+.. .+|+...+.. |+++ ..|++|++...
T Consensus 165 EP~~~LD~~~~~~l~~~l-------~~~~~~~tii~-~sh~~~~~~~-~d~i-~~l~~g~~~~~ 218 (221)
T cd03244 165 EATASVDPETDALIQKTI-------REAFKDCTVLT-IAHRLDTIID-SDRI-LVLDKGRVVEF 218 (221)
T ss_pred CccccCCHHHHHHHHHHH-------HHhcCCCEEEE-EeCCHHHHhh-CCEE-EEEECCeEEec
Confidence 999999998864332222 11111 1101 1388877754 8887 77777876544
No 223
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=1.9e-12 Score=125.36 Aligned_cols=171 Identities=13% Similarity=0.096 Sum_probs=98.9
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------h--hhccCCCCc
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSAV 86 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~p~~~~ 86 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||...
T Consensus 27 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~ 95 (280)
T PRK13633 27 DDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL-----------LIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPD 95 (280)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEeccccccHHHHhhheEEEecChh
Confidence 344456889999999999999999999999999 779999999998765321 1 134454421
Q ss_pred --CceeEEEeeccccccccC--C---CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCC
Q 015465 87 --PAFLEIHDIAGLVRGAHE--G---QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 87 --~~~i~lvD~~gl~~~~~~--~---~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
....++.|...+...... . ......+++.+...+ -.+.+++++ .+|+++++| ||+
T Consensus 96 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt 172 (280)
T PRK13633 96 NQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFD---EPT 172 (280)
T ss_pred hhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCc
Confidence 111122222222110000 0 000000111110000 014456666 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+++|....+.....+..+.+ .....+ .-.+|+...+.. |+++ .+|.+|+++..++
T Consensus 173 ~gLD~~~~~~l~~~l~~l~~---~~g~ti-llvtH~~~~~~~-~d~v-~~l~~G~i~~~g~ 227 (280)
T PRK13633 173 AMLDPSGRREVVNTIKELNK---KYGITI-ILITHYMEEAVE-ADRI-IVMDSGKVVMEGT 227 (280)
T ss_pred ccCCHHHHHHHHHHHHHHHH---hcCCEE-EEEecChHHHhc-CCEE-EEEECCEEEEecC
Confidence 99999986544332211110 001111 111399988865 9999 8889998876654
No 224
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=3.3e-12 Score=120.27 Aligned_cols=166 Identities=16% Similarity=0.180 Sum_probs=96.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----h--hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~p~~~~~~ 88 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.++.....
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF-----------YDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF 87 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhh
Confidence 33456789999999999999999999999999 679999999998765321 1 23555542111
Q ss_pred eeEEEeeccccccccCCC---------CCcchhhhh---------------HH-hhhchhhhhccc-CCCceEeecCCCC
Q 015465 89 FLEIHDIAGLVRGAHEGQ---------GLGNSFLSH---------------IR-AVDGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~---------~l~~~~l~~---------------l~-~ad~ll~vvda~-~~~~il~ld~~~d 142 (406)
..++.|...+........ ++ ...+.. +. .....+.++++. .+|+++++| |
T Consensus 88 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllD---E 163 (236)
T cd03253 88 NDTIGYNIRYGRPDATDEEVIEAAKAAQI-HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLD---E 163 (236)
T ss_pred cchHHHHHhhcCCCCCHHHHHHHHHHcCc-HHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 223333222111000000 00 000000 00 000114455665 799999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
|++++|....+.....+..+ .. ...+.. .+|+...+.. |+++ .+|.+|++...+
T Consensus 164 P~~~LD~~~~~~l~~~l~~~----~~-~~tiii-~sh~~~~~~~-~d~~-~~l~~g~i~~~~ 217 (236)
T cd03253 164 ATSALDTHTEREIQAALRDV----SK-GRTTIV-IAHRLSTIVN-ADKI-IVLKDGRIVERG 217 (236)
T ss_pred CcccCCHHHHHHHHHHHHHh----cC-CCEEEE-EcCCHHHHHh-CCEE-EEEECCEEEeeC
Confidence 99999998864433322111 11 111111 1388887754 8988 778888876544
No 225
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.25 E-value=6.8e-12 Score=134.70 Aligned_cols=163 Identities=18% Similarity=0.235 Sum_probs=104.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~~~~~ 88 (406)
...-.+++|+++||+|++|||||||+++|+|. ..|+.|.|.++|.++..+.. .|.||.....
T Consensus 491 ~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl-----------y~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf 559 (709)
T COG2274 491 DLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL-----------YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF 559 (709)
T ss_pred ceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhh
Confidence 34456889999999999999999999999999 78999999999998765442 4667654333
Q ss_pred eeEEEeeccccccccCCCCCcchhhhhHHhh----------------------------hchhhhhccc-CCCceEeecC
Q 015465 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~a----------------------------d~ll~vvda~-~~~~il~ld~ 139 (406)
.-++.|...+.......+ +..+.++.+ .-.+.++|++ .+|.++++|
T Consensus 560 ~gSI~eNi~l~~p~~~~e----~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLD- 634 (709)
T COG2274 560 SGSIRENIALGNPEATDE----EIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLD- 634 (709)
T ss_pred cCcHHHHHhcCCCCCCHH----HHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEe-
Confidence 333444333322111100 000000000 0013455555 699999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
||++.+|..++..+...+ .++. ++. .-.+|... .-+-||+| .+|++|+++..|+-
T Consensus 635 --EaTSaLD~~sE~~I~~~L-------~~~~~~~T~-I~IaHRl~-ti~~adrI-iVl~~Gkiv~~gs~ 691 (709)
T COG2274 635 --EATSALDPETEAIILQNL-------LQILQGRTV-IIIAHRLS-TIRSADRI-IVLDQGKIVEQGSH 691 (709)
T ss_pred --CcccccCHhHHHHHHHHH-------HHHhcCCeE-EEEEccch-HhhhccEE-EEccCCceeccCCH
Confidence 999999999875543332 2221 110 11126654 45778999 88999999988753
No 226
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=2.6e-12 Score=124.90 Aligned_cols=172 Identities=14% Similarity=0.106 Sum_probs=99.5
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh----------hh--hhccC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----------LC--QLFKP 82 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~----------l~--~~~~p 82 (406)
.+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.. +. ..|.+
T Consensus 28 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~ 96 (289)
T PRK13645 28 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL-----------IISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVF 96 (289)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEccccccccccHHHHhccEEEEE
Confidence 344567889999999999999999999999999 67899999998865421 11 13444
Q ss_pred CCCc--CceeEEEeeccccccccC--CCC---CcchhhhhHHhh---------------hchhhhhccc-CCCceEeecC
Q 015465 83 KSAV--PAFLEIHDIAGLVRGAHE--GQG---LGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 83 ~~~~--~~~i~lvD~~gl~~~~~~--~~~---l~~~~l~~l~~a---------------d~ll~vvda~-~~~~il~ld~ 139 (406)
|... ....++.|...+...... ... .....++.+... .-.+.+++|+ .+|+++++|
T Consensus 97 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD- 175 (289)
T PRK13645 97 QFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLD- 175 (289)
T ss_pred eCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe-
Confidence 4421 111122222211100000 000 000011111000 0014455665 799999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|....+.....+..+.+ .....+ .-.+|+...+..+|+++ .+|++|+++..++
T Consensus 176 --EPt~~LD~~~~~~l~~~l~~~~~---~~~~ti-iiisH~~~~~~~~~d~i-~~l~~G~i~~~g~ 234 (289)
T PRK13645 176 --EPTGGLDPKGEEDFINLFERLNK---EYKKRI-IMVTHNMDQVLRIADEV-IVMHEGKVISIGS 234 (289)
T ss_pred --CCcccCCHHHHHHHHHHHHHHHH---hcCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999986544333221110 001111 11239999999999999 8889998876554
No 227
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3.3e-12 Score=122.08 Aligned_cols=174 Identities=17% Similarity=0.199 Sum_probs=99.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~~ 86 (406)
+....+.+|+++||+|+||||||||+++|+|...+.. -.|++|.|.++|.++.. +. ..|.++...
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~------~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 30 NVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIK------NCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCccc------CCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 4455688999999999999999999999999821000 01378999998876421 11 235555422
Q ss_pred CceeEEEeeccccccccC--CCCCcchhhhhHHhh---------------------hchhhhhccc-CCCceEeecCCCC
Q 015465 87 PAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~--~~~l~~~~l~~l~~a---------------------d~ll~vvda~-~~~~il~ld~~~d 142 (406)
....++.|...+...... .........+.++.+ .-.+.+++++ .+|+++++| |
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---E 180 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFD---E 180 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---C
Confidence 111343343322110000 000000000001100 0114455665 789999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++++|..........+..+ .+ ...+ .-.+|+...+..+|+++ .+|++|++...++
T Consensus 181 Pt~~LD~~~~~~l~~~l~~l----~~-~~ti-iivsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 236 (258)
T PRK14268 181 PTSALDPISTARIEDLIMNL----KK-DYTI-VIVTHNMQQAARISDYT-GFFLMGELIEFGQ 236 (258)
T ss_pred CCcccCHHHHHHHHHHHHHH----hh-CCEE-EEEECCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999865443332211 11 1111 11239999999999999 8889998876543
No 228
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.24 E-value=6.1e-12 Score=115.81 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=41.2
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
.....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~ 64 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGL-----------SPPLAGRVLLNGGPL 64 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEec
Confidence 34456889999999999999999999999999 678999999988664
No 229
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.24 E-value=5.9e-12 Score=131.12 Aligned_cols=66 Identities=21% Similarity=0.400 Sum_probs=48.3
Q ss_pred CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc-ccCCCC
Q 015465 130 EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (406)
Q Consensus 130 ~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~-~~~~~t 207 (406)
.+|++++|| ||++.+|+-. +.+++..+..+...+ .-.+|+......+|++| ..|+.|++. +.|.++
T Consensus 170 ~~pDlLLLD---EPTNHLD~~~-------i~WLe~~L~~~~gtv-iiVSHDR~FLd~V~t~I-~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 170 EEPDLLLLD---EPTNHLDLES-------IEWLEDYLKRYPGTV-IVVSHDRYFLDNVATHI-LELDRGKLTPYKGNYS 236 (530)
T ss_pred cCCCEEEEc---CCCcccCHHH-------HHHHHHHHHhCCCcE-EEEeCCHHHHHHHhhhe-EEecCCceeEecCCHH
Confidence 599999999 9999998876 345666554433311 11239999999999999 888888765 447665
No 230
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.24 E-value=1e-11 Score=114.73 Aligned_cols=159 Identities=17% Similarity=0.259 Sum_probs=92.2
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------hhhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~~~~~p~~~~~~ 88 (406)
+..-.+.+|++++|+|+||||||||+++|+|. ..|++|.+.++|.++... ...|.+|.....
T Consensus 26 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (207)
T cd03369 26 NVSFKVKAGEKIGIVGRTGAGKSTLILALFRF-----------LEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLF 94 (207)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCccc
Confidence 34456789999999999999999999999999 678999999998765321 123455542111
Q ss_pred eeEEEeeccccccccCCCCCcchhhhhHH----------hhhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhh
Q 015465 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIR----------AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLK 157 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~~~~l~~l~----------~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~ 157 (406)
..++.|...+...... ..+.+.++ ...--+.+++++ .+|+++++| ||++.+|....+....
T Consensus 95 ~~tv~~~l~~~~~~~~-----~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~~l~~ 166 (207)
T cd03369 95 SGTIRSNLDPFDEYSD-----EEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLD---EATASIDYATDALIQK 166 (207)
T ss_pred CccHHHHhcccCCCCH-----HHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe---CCcccCCHHHHHHHHH
Confidence 1222222211110000 00000000 000113455555 699999999 9999999987533222
Q ss_pred hHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHhhCCCcccc
Q 015465 158 DIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (406)
Q Consensus 158 di~~l~k~l~~~~--~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~ 203 (406)
- +..+. ..+ .-.+|+...+.. |+++ ..|.+|++...
T Consensus 167 ~-------l~~~~~~~ti-ii~th~~~~~~~-~d~v-~~l~~g~i~~~ 204 (207)
T cd03369 167 T-------IREEFTNSTI-LTIAHRLRTIID-YDKI-LVMDAGEVKEY 204 (207)
T ss_pred H-------HHHhcCCCEE-EEEeCCHHHHhh-CCEE-EEEECCEEEec
Confidence 1 11111 011 111388877765 8888 67777876543
No 231
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.24 E-value=1.7e-12 Score=140.67 Aligned_cols=159 Identities=17% Similarity=0.141 Sum_probs=101.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+..-++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. ..|.||...-.
T Consensus 471 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf 539 (686)
T TIGR03797 471 DVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-----------ETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM 539 (686)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccC
Confidence 34456889999999999999999999999999 7899999999998765432 24666653322
Q ss_pred eeEEEeeccccccccCC------------------------------CCCcchhhhhHHhhhchhhhhccc-CCCceEee
Q 015465 89 FLEIHDIAGLVRGAHEG------------------------------QGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHV 137 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~------------------------------~~l~~~~l~~l~~ad~ll~vvda~-~~~~il~l 137 (406)
.-++.|...+....... ..+..--.++ +.++||+ .+|+++++
T Consensus 540 ~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQR-------ialARAll~~p~iLiL 612 (686)
T TIGR03797 540 SGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQR-------LLIARALVRKPRILLF 612 (686)
T ss_pred cccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH-------HHHHHHHhcCCCEEEE
Confidence 22333333332110000 0000000122 4456666 69999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 138 d~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
| ||++.+|..+++.+...+ ..+.+++ .-.+|..+.+. .+|+| ..|++|+++..|+
T Consensus 613 D---EpTS~LD~~te~~i~~~L-------~~~~~T~-IiItHr~~~i~-~~D~I-ivl~~G~iv~~G~ 667 (686)
T TIGR03797 613 D---EATSALDNRTQAIVSESL-------ERLKVTR-IVIAHRLSTIR-NADRI-YVLDAGRVVQQGT 667 (686)
T ss_pred e---CCccCCCHHHHHHHHHHH-------HHhCCeE-EEEecChHHHH-cCCEE-EEEECCEEEEECC
Confidence 9 999999999875443322 2121111 11248886654 48998 8889999887765
No 232
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3.3e-12 Score=123.05 Aligned_cols=169 Identities=18% Similarity=0.209 Sum_probs=99.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccC-----CceeEEEcCCcchhh-------h--hhhcc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEW-------L--CQLFK 81 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~-----p~~G~i~v~g~~~~~-------l--~~~~~ 81 (406)
+....+.+|++++|+|+||||||||+++|+|. .. |++|.|.++|.++.. + ...|.
T Consensus 42 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl-----------~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v 110 (271)
T PRK14238 42 NINLDIHENEVTAIIGPSGCGKSTYIKTLNRM-----------VELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMV 110 (271)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh-----------ccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEE
Confidence 34456889999999999999999999999998 33 689999999876521 1 12355
Q ss_pred CCCCcCceeEEEeeccccccccC--CCCC-cchhhhhHHhh----------h-----------chhhhhccc-CCCceEe
Q 015465 82 PKSAVPAFLEIHDIAGLVRGAHE--GQGL-GNSFLSHIRAV----------D-----------GIFHVLRAF-EDPDIIH 136 (406)
Q Consensus 82 p~~~~~~~i~lvD~~gl~~~~~~--~~~l-~~~~l~~l~~a----------d-----------~ll~vvda~-~~~~il~ 136 (406)
+|.......++.|...+...... .... ...+...++.. + -.+.+++++ .+|++++
T Consensus 111 ~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lll 190 (271)
T PRK14238 111 FQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVIL 190 (271)
T ss_pred ecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 65522111233333322110000 0000 00000101100 0 013455555 7899999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+| ||++++|..........+.. +.+ ...+ .-.+|+...+..+|+++ ..|++|++...++
T Consensus 191 LD---EPt~~LD~~~~~~l~~~l~~----~~~-~~ti-iivsH~~~~i~~~~d~i-~~l~~G~i~~~g~ 249 (271)
T PRK14238 191 MD---EPTSALDPISTLKVEELVQE----LKK-DYSI-IIVTHNMQQAARISDKT-AFFLNGYVNEYDD 249 (271)
T ss_pred Ee---CCCCcCCHHHHHHHHHHHHH----HHc-CCEE-EEEEcCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99 99999999986443332211 111 1111 11239999999999999 8889998876554
No 233
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.24 E-value=6.2e-12 Score=116.93 Aligned_cols=164 Identities=17% Similarity=0.147 Sum_probs=91.1
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEE-cCCcchhhhhhhccCCCCcCceeEEEeec
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-IPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~-v~g~~~~~l~~~~~p~~~~~~~i~lvD~~ 96 (406)
...+.+|+++||+||||||||||+++|+|. ..|++|.+. +++..+. .. + ...++..+++.+..
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-----------~~~~sG~i~~~~~~~~~-~~--~--~~~l~~~ltv~enl 70 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGL-----------DAPDEGDFIGLRGDALP-LG--A--NSFILPGLTGEENA 70 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCCCEEEecCceec-cc--c--ccccCCcCcHHHHH
Confidence 345889999999999999999999999999 678899886 6654321 00 0 00111112222221
Q ss_pred cccccccC--CC----------CCcc---hhhhhHH-hhhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhH
Q 015465 97 GLVRGAHE--GQ----------GLGN---SFLSHIR-AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDI 159 (406)
Q Consensus 97 gl~~~~~~--~~----------~l~~---~~l~~l~-~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di 159 (406)
.+...... .. ++.. +....+. .-.-.+.+++++ .+|+++++| ||+..+|..........+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllD---EP~~~lD~~~~~~~~~~l 147 (213)
T PRK15177 71 RMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIAD---GKLYTGDNATQLRMQAAL 147 (213)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEEC---CCCccCCHHHHHHHHHHH
Confidence 11100000 00 0000 0000000 000013344555 689999999 998888887754332221
Q ss_pred HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 160 EFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 160 ~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
.+.+.. +.+ .-.+|+...+..+||++ .+|.+|+++..+++.
T Consensus 148 ---~~~~~~--~~i-i~vsH~~~~~~~~~d~i-~~l~~G~i~~~~~~~ 188 (213)
T PRK15177 148 ---ACQLQQ--KGL-IVLTHNPRLIKEHCHAF-GVLLHGKITMCEDLA 188 (213)
T ss_pred ---HHHhhC--CcE-EEEECCHHHHHHhcCee-EEEECCeEEEeCCHH
Confidence 111110 111 11249999999999999 889999988766543
No 234
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.24 E-value=4.4e-12 Score=137.89 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=101.8
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~i 90 (406)
.-++++|+++||+|++|||||||+++|+|. .+|++|.|.++|.++..+. ..|.||......-
T Consensus 499 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g 567 (710)
T TIGR03796 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGL-----------YQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG 567 (710)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc
Confidence 346789999999999999999999999999 7899999999998876543 2467776433333
Q ss_pred EEEeeccccccccCCC-------------------------------CCcchhhhhHHhhhchhhhhccc-CCCceEeec
Q 015465 91 EIHDIAGLVRGAHEGQ-------------------------------GLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVD 138 (406)
Q Consensus 91 ~lvD~~gl~~~~~~~~-------------------------------~l~~~~l~~l~~ad~ll~vvda~-~~~~il~ld 138 (406)
++.|...+.......+ .+..--.++ +.++||+ .+|+++++|
T Consensus 568 Ti~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQR-------iaLARall~~p~iliLD 640 (710)
T TIGR03796 568 TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQR-------LEIARALVRNPSILILD 640 (710)
T ss_pred cHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHH-------HHHHHHHhhCCCEEEEE
Confidence 4444333321100000 000000122 3455665 699999999
Q ss_pred CCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 139 ~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
||++.+|...+..+...+ ....+++ .-.+|....+. .+|+| ..|++|+++..|+.
T Consensus 641 ---EptS~LD~~te~~i~~~l-------~~~~~T~-IiitHrl~~i~-~~D~I-ivl~~G~i~~~G~~ 695 (710)
T TIGR03796 641 ---EATSALDPETEKIIDDNL-------RRRGCTC-IIVAHRLSTIR-DCDEI-IVLERGKVVQRGTH 695 (710)
T ss_pred ---CccccCCHHHHHHHHHHH-------HhcCCEE-EEEecCHHHHH-hCCEE-EEEeCCEEEEecCH
Confidence 999999998864443322 1111111 11238886654 48998 88899998876653
No 235
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.24 E-value=4.9e-12 Score=105.79 Aligned_cols=86 Identities=31% Similarity=0.439 Sum_probs=66.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
+|+|+|++|||||||+|+|+|... .+++.|++|..+..+.+.+++. .+.++|+||+......
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~~~~vDtpG~~~~~~~ 63 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK-----------------KFILVDTPGINDGESQ 63 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE-----------------EEEEEESSSCSSSSHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee-----------------eEEEEeCCCCcccchh
Confidence 589999999999999999999754 5589999999998888888754 3689999999765433
Q ss_pred CC--CCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQ--GLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~--~l~~~~l~~l~~ad~ll~vvda 128 (406)
.. .....+++.++.+|++++|+++
T Consensus 64 ~~~~~~~~~~~~~~~~~d~ii~vv~~ 89 (116)
T PF01926_consen 64 DNDGKEIRKFLEQISKSDLIIYVVDA 89 (116)
T ss_dssp HHHHHHHHHHHHHHCTESEEEEEEET
T ss_pred hHHHHHHHHHHHHHHHCCEEEEEEEC
Confidence 21 1223466677888888888875
No 236
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=2.3e-12 Score=124.89 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=98.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCce---eEEEcCCcchhh-----hh--hhccCCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE---ARVNIPDERFEW-----LC--QLFKPKSA 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~---G~i~v~g~~~~~-----l~--~~~~p~~~ 85 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|+. |.|.++|.++.. +. ..|.+|..
T Consensus 25 ~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~-----------~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~ 93 (282)
T PRK13640 25 DISFSIPRGSWTALIGHNGSGKSTISKLINGL-----------LLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNP 93 (282)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc-----------cCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECH
Confidence 34456889999999999999999999999999 56776 899998876532 11 13445442
Q ss_pred --cCceeEEEeeccccccccC--CCCC---cchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCC
Q 015465 86 --VPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 86 --~~~~i~lvD~~gl~~~~~~--~~~l---~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.....++.|...+...... .... ...+++.+...+ -.+.+++++ .+|+++++| ||
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllD---EP 170 (282)
T PRK13640 94 DNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILD---ES 170 (282)
T ss_pred HHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CC
Confidence 1222344443322110000 0000 000111110000 014455665 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++++|....+....-+..+. ......+.. .+|+...+ ..|+++ ..|.+|+++..++
T Consensus 171 t~gLD~~~~~~l~~~l~~l~---~~~g~tvli-~tH~~~~~-~~~d~i-~~l~~G~i~~~g~ 226 (282)
T PRK13640 171 TSMLDPAGKEQILKLIRKLK---KKNNLTVIS-ITHDIDEA-NMADQV-LVLDDGKLLAQGS 226 (282)
T ss_pred cccCCHHHHHHHHHHHHHHH---HhcCCEEEE-EecCHHHH-HhCCEE-EEEECCEEEEeCC
Confidence 99999998644433221111 000011111 13888887 479998 7889999887654
No 237
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=4.9e-12 Score=120.25 Aligned_cols=175 Identities=15% Similarity=0.219 Sum_probs=100.1
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------h--hhhccCCCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------L--CQLFKPKSA 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l--~~~~~p~~~ 85 (406)
.+....+.+|++++|+|+||||||||+++|+|...+. | ..|++|.|.++|.++.. . ...|.+|..
T Consensus 20 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~---~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14262 20 KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHI---P---GFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93 (250)
T ss_pred eeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCC---C---CCCcceEEEECCEEcccchhhHHHhhhhEEEEecCC
Confidence 3445678899999999999999999999999982100 0 01378999999865421 1 123455542
Q ss_pred cCceeEEEeeccccccccC---CCCCcchhhhhHHhh---------------------hchhhhhccc-CCCceEeecCC
Q 015465 86 VPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~---~~~l~~~~l~~l~~a---------------------d~ll~vvda~-~~~~il~ld~~ 140 (406)
.....++.|...+...... ...........++.. .-.+.+++++ .+|+++++|
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllD-- 171 (250)
T PRK14262 94 TPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLD-- 171 (250)
T ss_pred ccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEe--
Confidence 2112344443322111000 000000000000000 0114456666 789999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|..........+..+ .. ...+ .-.+|+...+..+|+++ .+|.+|++...++
T Consensus 172 -EP~~~LD~~~~~~l~~~l~~~----~~-~~ti-li~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (250)
T PRK14262 172 -EPTSALDPIATQRIEKLLEEL----SE-NYTI-VIVTHNIGQAIRIADYI-AFMYRGELIEYGP 228 (250)
T ss_pred -CCccccCHHHHHHHHHHHHHH----hc-CcEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 999999999864443322111 11 1111 11239998889999999 8889998876553
No 238
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.24 E-value=3.4e-12 Score=119.08 Aligned_cols=165 Identities=14% Similarity=0.170 Sum_probs=92.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----------hhhccCCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLFKPKSA 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----------~~~~~p~~~ 85 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.|+..
T Consensus 23 ~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (220)
T TIGR02982 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGGL-----------RSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAH 91 (220)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCCh
Confidence 44455789999999999999999999999999 679999999998765321 123455442
Q ss_pred -cCceeEEEeeccccccccCC---C---CCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCC
Q 015465 86 -VPAFLEIHDIAGLVRGAHEG---Q---GLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 86 -~~~~i~lvD~~gl~~~~~~~---~---~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.....++.+...+....... . .....+++.+... ...+.++++. .+|+++++| ||
T Consensus 92 ~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlD---EP 168 (220)
T TIGR02982 92 NLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLAD---EP 168 (220)
T ss_pred hhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CC
Confidence 22223333322211100000 0 0000111111000 0014455665 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCc
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~ 200 (406)
+..+|....+....-+..+ .......+ .-.+|+.. ..++||++ .+|.+|+.
T Consensus 169 ~~~LD~~~~~~l~~~l~~~---~~~~~~ti-i~~sh~~~-~~~~~d~v-~~l~~g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKL---AREQGCTI-LIVTHDNR-ILDVADRI-VHMEDGKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHH---HHHcCCEE-EEEeCCHH-HHhhCCEE-EEEECCEE
Confidence 9999998854333322111 10001111 11138876 45788887 66666653
No 239
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.23 E-value=3.9e-12 Score=135.24 Aligned_cols=159 Identities=17% Similarity=0.207 Sum_probs=100.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+.--++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. ..|.||.....
T Consensus 361 ~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl-----------~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf 429 (582)
T PRK11176 361 NINFKIPAGKTVALVGRSGSGKSTIANLLTRF-----------YDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLF 429 (582)
T ss_pred CceEEeCCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCceEEECCEEhhhcCHHHHHhhceEEccCceee
Confidence 34455789999999999999999999999999 7899999999998765432 14677764332
Q ss_pred eeEEEeeccccccc-cCCC---------C----------------------CcchhhhhHHhhhchhhhhccc-CCCceE
Q 015465 89 FLEIHDIAGLVRGA-HEGQ---------G----------------------LGNSFLSHIRAVDGIFHVLRAF-EDPDII 135 (406)
Q Consensus 89 ~i~lvD~~gl~~~~-~~~~---------~----------------------l~~~~l~~l~~ad~ll~vvda~-~~~~il 135 (406)
.-++.|...+.... .... + +..--.++ +.++|++ .+|+++
T Consensus 430 ~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQR-------i~LARall~~~~il 502 (582)
T PRK11176 430 NDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQR-------IAIARALLRDSPIL 502 (582)
T ss_pred cchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHH-------HHHHHHHHhCCCEE
Confidence 33333333332110 0000 0 00000122 3455665 699999
Q ss_pred eecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 136 ~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++| ||++.+|..++...... +..+. +.+ .-.+|....+ ..||+| ..|++|++...|+
T Consensus 503 ilD---EptsaLD~~t~~~i~~~-------l~~~~~~~tv-I~VtHr~~~~-~~~D~I-i~l~~g~i~e~g~ 561 (582)
T PRK11176 503 ILD---EATSALDTESERAIQAA-------LDELQKNRTS-LVIAHRLSTI-EKADEI-LVVEDGEIVERGT 561 (582)
T ss_pred EEE---CccccCCHHHHHHHHHH-------HHHHhCCCEE-EEEecchHHH-HhCCEE-EEEECCEEEEeCC
Confidence 999 99999999986433222 21111 011 1123888654 458988 7888898876665
No 240
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.23 E-value=3.8e-12 Score=122.39 Aligned_cols=174 Identities=17% Similarity=0.195 Sum_probs=98.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|...+. .-.|++|.|.++|.++.. +. ..|.++...
T Consensus 37 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 37 DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTI------DGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccc------cCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 344568899999999999999999999999982100 002489999999876531 11 135555421
Q ss_pred CceeEEEeecccccccc----CCCCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeecCC
Q 015465 87 PAFLEIHDIAGLVRGAH----EGQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~----~~~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld~~ 140 (406)
....++.|...+..... .......+....++..+ -.+.+++++ .+|+++++|
T Consensus 111 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD-- 188 (267)
T PRK14235 111 PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMD-- 188 (267)
T ss_pred CCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe--
Confidence 11113333332211000 00000000000011100 013455555 789999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|.........-+..+ .. ...+ .-.+|+...+..+|+++ .+|.+|++...++
T Consensus 189 -EPt~~LD~~~~~~l~~~L~~l----~~-~~ti-iivtH~~~~~~~~~d~v-~~l~~G~i~~~g~ 245 (267)
T PRK14235 189 -EPCSALDPIATAKVEELIDEL----RQ-NYTI-VIVTHSMQQAARVSQRT-AFFHLGNLVEVGD 245 (267)
T ss_pred -CCCcCCCHHHHHHHHHHHHHH----hc-CCeE-EEEEcCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 999999999865443332211 11 1111 11239999999999998 8888898876543
No 241
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.23 E-value=9.4e-12 Score=114.41 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=75.2
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----h--hhccCCC-CcC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPKS-AVP 87 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~--~~~~p~~-~~~ 87 (406)
.+....+.+|+++||+|+||||||||+++|+|. ..|++|.+.++|.++... . ..|.|+. ..+
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 86 (200)
T PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL-----------LNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGIN 86 (200)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeeEEECCCccccCHHHHHhheEEeccccccC
Confidence 344556889999999999999999999999999 679999999998765321 1 1244443 122
Q ss_pred ceeEEEeeccccccccCCCCCcchhhhhHH--------------hhhchhhhhccc-CCCceEeecCCCCCCchHHHHHH
Q 015465 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIR--------------AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~--------------~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~ 152 (406)
...++.|...+.............++..+. ...-.+.+++++ .+|+++++| ||++++|....
T Consensus 87 ~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilD---EP~~~LD~~~~ 163 (200)
T PRK13540 87 PYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLD---EPLVALDELSL 163 (200)
T ss_pred cCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCcccCHHHH
Confidence 223333332221100000000000111000 000114455665 799999999 99999999885
Q ss_pred HH
Q 015465 153 EL 154 (406)
Q Consensus 153 el 154 (406)
+.
T Consensus 164 ~~ 165 (200)
T PRK13540 164 LT 165 (200)
T ss_pred HH
Confidence 43
No 242
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=6.8e-12 Score=120.61 Aligned_cols=173 Identities=15% Similarity=0.151 Sum_probs=98.1
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCCcC
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSAVP 87 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~~~ 87 (406)
....+.+|++++|+|+||||||||+++|+|.... ....|++|.|.++|.++.. .. ..|.+|....
T Consensus 40 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL------IPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccc------cCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 3455789999999999999999999999997200 0012689999998876531 11 2355554211
Q ss_pred ceeEEEeeccccccccC--CCC-CcchhhhhHHh---------------------hhchhhhhccc-CCCceEeecCCCC
Q 015465 88 AFLEIHDIAGLVRGAHE--GQG-LGNSFLSHIRA---------------------VDGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~--~~~-l~~~~l~~l~~---------------------ad~ll~vvda~-~~~~il~ld~~~d 142 (406)
...++.|...+...... ... ........+.. ..-.+.+++++ .+|+++++| |
T Consensus 114 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD---E 190 (268)
T PRK14248 114 FPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD---E 190 (268)
T ss_pred CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEc---C
Confidence 11133332221100000 000 00000000000 00114455665 799999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++++|....+.....+..+ .. ...+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 191 Pt~~LD~~~~~~l~~~l~~~----~~-~~tiii-~tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 246 (268)
T PRK14248 191 PASALDPISNAKIEELITEL----KE-EYSIII-VTHNMQQALRVSDRT-AFFLNGDLVEYDQ 246 (268)
T ss_pred CCcccCHHHHHHHHHHHHHH----hc-CCEEEE-EEeCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999998865443322211 11 111111 239999999999999 8889998876543
No 243
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.23 E-value=1e-11 Score=113.79 Aligned_cols=124 Identities=11% Similarity=0.159 Sum_probs=73.4
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh---hhccCCC-CcCceeEE
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---QLFKPKS-AVPAFLEI 92 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~---~~~~p~~-~~~~~i~l 92 (406)
....+++|++++|+|+||||||||+++|+|. ..|++|.+.++|.++.... ..|.++. ......++
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv 87 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGI-----------MQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTV 87 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCH
Confidence 4456789999999999999999999999999 6799999999987653321 1244433 12222233
Q ss_pred EeeccccccccCCCCCcchhhhhHH--------------hhhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHH
Q 015465 93 HDIAGLVRGAHEGQGLGNSFLSHIR--------------AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAEL 154 (406)
Q Consensus 93 vD~~gl~~~~~~~~~l~~~~l~~l~--------------~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el 154 (406)
.|...+.............+++.+. .....+.++++. .+|+++++| ||++.+|....+.
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllD---EP~~~LD~~~~~~ 161 (195)
T PRK13541 88 FENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLD---EVETNLSKENRDL 161 (195)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHH
Confidence 3322111100000000000000000 001114455555 689999999 9999999988533
No 244
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.23 E-value=9e-12 Score=119.87 Aligned_cols=172 Identities=17% Similarity=0.231 Sum_probs=98.5
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------h--hhccCCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~p~~ 84 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|..+... . ..|.++.
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~ 97 (268)
T PRK10419 29 NNVSLSLKSGETVALLGRSGCGKSTLARLLVGL-----------ESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQD 97 (268)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcC
Confidence 344566889999999999999999999999999 678999999998754321 1 1244443
Q ss_pred C---cCceeEEEeeccccc----cccC--CCCCcchhhhhHH---------------hhhchhhhhccc-CCCceEeecC
Q 015465 85 A---VPAFLEIHDIAGLVR----GAHE--GQGLGNSFLSHIR---------------AVDGIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 85 ~---~~~~i~lvD~~gl~~----~~~~--~~~l~~~~l~~l~---------------~ad~ll~vvda~-~~~~il~ld~ 139 (406)
. .+...++.|...+.. .... .......++..+. .....+.+++++ .+|+++++|
T Consensus 98 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLD- 176 (268)
T PRK10419 98 SISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILD- 176 (268)
T ss_pred hhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEe-
Confidence 2 111122222211000 0000 0000000010000 000113455555 799999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|....+.....+..+. +.....+ .-.+|+...+..+|+++ ..|.+|++...++
T Consensus 177 --EPt~~LD~~~~~~~~~~l~~~~---~~~~~ti-iivsH~~~~i~~~~d~i-~~l~~G~i~~~g~ 235 (268)
T PRK10419 177 --EAVSNLDLVLQAGVIRLLKKLQ---QQFGTAC-LFITHDLRLVERFCQRV-MVMDNGQIVETQP 235 (268)
T ss_pred --CCCcccCHHHHHHHHHHHHHHH---HHcCcEE-EEEECCHHHHHHhCCEE-EEEECCEEeeeCC
Confidence 9999999988644433222111 1001111 11139999999999999 7788888765544
No 245
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=6.2e-12 Score=121.05 Aligned_cols=166 Identities=12% Similarity=0.129 Sum_probs=92.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|...+ ....|++|.|.++|.++.. +. ..|.||...
T Consensus 31 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~------~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 31 NVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDL------IEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc------cCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 34456789999999999999999999999998210 0001689999998875421 11 235555421
Q ss_pred CceeEEEeeccccccccC-CCCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeecCCCCC
Q 015465 87 PAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~-~~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld~~~dP 143 (406)
....++.|...+...... .........+.++.++ -.+.+++++ .+|+++++| ||
T Consensus 105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---EP 181 (269)
T PRK14259 105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMD---EP 181 (269)
T ss_pred cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CC
Confidence 111133332222110000 0000000000011110 014455665 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD 197 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~ 197 (406)
++++|....+.....+..+ .. ...+ .-.+|+...+..+||++ .+|++
T Consensus 182 t~gLD~~~~~~l~~~l~~~----~~-~~ti-iivtH~~~~~~~~~d~i-~~l~~ 228 (269)
T PRK14259 182 CSALDPISTLKIEETMHEL----KK-NFTI-VIVTHNMQQAVRVSDMT-AFFNA 228 (269)
T ss_pred CccCCHHHHHHHHHHHHHH----hc-CCEE-EEEeCCHHHHHHhcCEE-EEEec
Confidence 9999998864433322111 10 1111 11239999999999998 77776
No 246
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.23 E-value=4e-12 Score=121.29 Aligned_cols=171 Identities=16% Similarity=0.148 Sum_probs=96.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCC----ceeEEEcCCcchhhh-----hhhccCCCC-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP----NEARVNIPDERFEWL-----CQLFKPKSA- 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p----~~G~i~v~g~~~~~l-----~~~~~p~~~- 85 (406)
+....+.+|++++|+|+||||||||+++|+|. ..| ++|.|.++|.++... ...|.++..
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~ 89 (254)
T PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGI-----------LPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPR 89 (254)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCcCCEEEECCeeccccccccceEEEEecCCc
Confidence 44457889999999999999999999999999 556 899999988765321 123445442
Q ss_pred --cCceeEEEeecccc---ccccCCCCCcchhhhhHHhh-----------------hchhhhhccc-CCCceEeecCCCC
Q 015465 86 --VPAFLEIHDIAGLV---RGAHEGQGLGNSFLSHIRAV-----------------DGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 86 --~~~~i~lvD~~gl~---~~~~~~~~l~~~~l~~l~~a-----------------d~ll~vvda~-~~~~il~ld~~~d 142 (406)
.....++.+..... .+..........+++.+... .-.+.++++. .+|+++++| |
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD---E 166 (254)
T PRK10418 90 SAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIAD---E 166 (254)
T ss_pred cccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 11111111111000 00000000000011111000 0013455555 799999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++++|....+....-+..+. ......+ .-.+|+...+..+|+++ ..|.+|++...++
T Consensus 167 Pt~~LD~~~~~~l~~~L~~~~---~~~g~ti-l~~sH~~~~~~~~~d~v-~~l~~G~i~~~~~ 224 (254)
T PRK10418 167 PTTDLDVVAQARILDLLESIV---QKRALGM-LLVTHDMGVVARLADDV-AVMSHGRIVEQGD 224 (254)
T ss_pred CCcccCHHHHHHHHHHHHHHH---HhcCcEE-EEEecCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 999999987644333221110 0000111 11139999999999998 8889998876543
No 247
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.23 E-value=4.7e-12 Score=121.71 Aligned_cols=174 Identities=14% Similarity=0.151 Sum_probs=98.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~~ 86 (406)
+....+.+|+.+||+|+||||||||+++|+|...+. ...|++|.|.++|.++.. .. ..|.|+...
T Consensus 38 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 111 (267)
T PRK14237 38 GIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTI------DIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111 (267)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcc------CCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence 344567899999999999999999999999983100 002679999998876531 11 235555421
Q ss_pred CceeEEEeecccccccc---CCCCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeecCCC
Q 015465 87 PAFLEIHDIAGLVRGAH---EGQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~---~~~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld~~~ 141 (406)
....++.|...+..... ..........+.++... -.+.+++++ .+|+++++|
T Consensus 112 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD--- 188 (267)
T PRK14237 112 PFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMD--- 188 (267)
T ss_pred cccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 11123333222210000 00000000000011100 014455665 799999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|....+.....+..+ .. ...+ .-.+|+...+.++||++ ..|++|++...++
T Consensus 189 EPt~~LD~~~~~~l~~~l~~~----~~-~~ti-ii~tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 245 (267)
T PRK14237 189 EPASALDPISTMQLEETMFEL----KK-NYTI-IIVTHNMQQAARASDYT-AFFYLGDLIEYDK 245 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHH----hc-CCEE-EEEecCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 999999998754433322111 10 1111 11239999999999999 8889998876654
No 248
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.22 E-value=7.1e-12 Score=114.19 Aligned_cols=47 Identities=26% Similarity=0.298 Sum_probs=41.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++
T Consensus 10 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~ 56 (190)
T TIGR01166 10 GLNFAAERGEVLALLGANGAGKSTLLLHLNGL-----------LRPQSGAVLIDGEPL 56 (190)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceeEEECCEEc
Confidence 44556889999999999999999999999999 679999999988764
No 249
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.22 E-value=6e-12 Score=119.85 Aligned_cols=171 Identities=18% Similarity=0.225 Sum_probs=96.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcc-----hhhh---------h--hh
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-----FEWL---------C--QL 79 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~-----~~~l---------~--~~ 79 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.+ +... . ..
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 89 (253)
T TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR-----------LAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWG 89 (253)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEEecccccccccccCCHHHHHHhhhcceE
Confidence 34566889999999999999999999999999 67899999998765 3211 0 13
Q ss_pred ccCCCCc---CceeEEEeeccc----cccc-c-CCCCCcchhhhhHHhh---------------hchhhhhccc-CCCce
Q 015465 80 FKPKSAV---PAFLEIHDIAGL----VRGA-H-EGQGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDI 134 (406)
Q Consensus 80 ~~p~~~~---~~~i~lvD~~gl----~~~~-~-~~~~l~~~~l~~l~~a---------------d~ll~vvda~-~~~~i 134 (406)
|.++... ...+++.+.... .... . ........+++.+... .-.+.++++. .+|++
T Consensus 90 ~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~v 169 (253)
T TIGR02323 90 FVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRL 169 (253)
T ss_pred EEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCE
Confidence 4444321 111111111100 0000 0 0000000111111100 0113455555 79999
Q ss_pred EeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 135 l~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+++| ||++.+|....+.....+..+ .......+.. .+|+...+..+|+++ ..|.+|++...++
T Consensus 170 lllD---EP~~~LD~~~~~~l~~~l~~~---~~~~~~tii~-vsH~~~~~~~~~d~~-~~l~~G~i~~~~~ 232 (253)
T TIGR02323 170 VFMD---EPTGGLDVSVQARLLDLLRGL---VRDLGLAVII-VTHDLGVARLLAQRL-LVMQQGRVVESGL 232 (253)
T ss_pred EEEc---CCCccCCHHHHHHHHHHHHHH---HHhcCCEEEE-EeCCHHHHHHhcCEE-EEEECCEEEEECC
Confidence 9999 999999999865443332111 1100111111 139999999999998 7788898875543
No 250
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=6e-12 Score=124.47 Aligned_cols=172 Identities=16% Similarity=0.177 Sum_probs=100.8
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh----------hhccCCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLFKPKS 84 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~----------~~~~p~~ 84 (406)
....-.+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++..+. ..|.+|.
T Consensus 32 ~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl-----------~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~ 100 (327)
T PRK11308 32 DGVSFTLERGKTLAVVGESGCGKSTLARLLTMI-----------ETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQN 100 (327)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC-----------CCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcC
Confidence 344556789999999999999999999999999 6788999999997653221 1244443
Q ss_pred C---cCceeEEEeecccc----ccccCC--CCCcchhhhhHHhhh-c--------------hhhhhccc-CCCceEeecC
Q 015465 85 A---VPAFLEIHDIAGLV----RGAHEG--QGLGNSFLSHIRAVD-G--------------IFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 85 ~---~~~~i~lvD~~gl~----~~~~~~--~~l~~~~l~~l~~ad-~--------------ll~vvda~-~~~~il~ld~ 139 (406)
. +...+++.+..... ...... ......+++.+...+ . -+.+++|+ .+|+++++|
T Consensus 101 ~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilD- 179 (327)
T PRK11308 101 PYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD- 179 (327)
T ss_pred chhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEE-
Confidence 1 22222222211100 000000 000011111111100 0 13455555 699999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|......++.-+..+.+ .....+ .-.+|++..+..+||++ .+|..|+++..++
T Consensus 180 --EPts~LD~~~~~~i~~lL~~l~~---~~g~ti-l~iTHdl~~~~~~adrv-~vm~~G~ive~g~ 238 (327)
T PRK11308 180 --EPVSALDVSVQAQVLNLMMDLQQ---ELGLSY-VFISHDLSVVEHIADEV-MVMYLGRCVEKGT 238 (327)
T ss_pred --CCCccCCHHHHHHHHHHHHHHHH---HcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999999986544333221111 111111 11239999999999999 8999999886654
No 251
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=3e-12 Score=123.77 Aligned_cols=171 Identities=16% Similarity=0.105 Sum_probs=99.1
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----h--hhccCCCC--
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA-- 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~p~~~-- 85 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|..
T Consensus 24 ~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 92 (277)
T PRK13642 24 NGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL-----------FEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDN 92 (277)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHH
Confidence 444566889999999999999999999999999 679999999998765321 1 13444442
Q ss_pred cCceeEEEeeccccccccC--CCCCcchhhhhHHhh-----------------hchhhhhccc-CCCceEeecCCCCCCc
Q 015465 86 VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAV-----------------DGIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~--~~~l~~~~l~~l~~a-----------------d~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
.....++.|...+...... ...........++.+ .-.+.+++++ .+|+++++| ||++
T Consensus 93 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllD---EPt~ 169 (277)
T PRK13642 93 QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILD---ESTS 169 (277)
T ss_pred hhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcc
Confidence 1222333333322100000 000000000000100 0114455665 799999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++|....+....-+..+ .+.....+ .-.+|+...+. .|+++ .+|++|+++..++
T Consensus 170 ~LD~~~~~~l~~~l~~l---~~~~g~ti-il~sH~~~~~~-~~d~i-~~l~~G~i~~~g~ 223 (277)
T PRK13642 170 MLDPTGRQEIMRVIHEI---KEKYQLTV-LSITHDLDEAA-SSDRI-LVMKAGEIIKEAA 223 (277)
T ss_pred cCCHHHHHHHHHHHHHH---HHhcCCEE-EEEeCCHHHHH-hCCEE-EEEECCEEEEeCC
Confidence 99999864433322111 00001111 11138888876 59998 8889998876654
No 252
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.22 E-value=3.6e-12 Score=136.46 Aligned_cols=171 Identities=19% Similarity=0.187 Sum_probs=102.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----------hhhccCCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLFKPKSA 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----------~~~~~p~~~ 85 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++..+ ...|.+|..
T Consensus 342 ~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 410 (623)
T PRK10261 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRL-----------VESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410 (623)
T ss_pred eeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCc
Confidence 34446779999999999999999999999999 679999999998754221 113455542
Q ss_pred ---cCceeEEEeeccccc---cccCCC---CCcchhhhhHHh----hh-----------chhhhhccc-CCCceEeecCC
Q 015465 86 ---VPAFLEIHDIAGLVR---GAHEGQ---GLGNSFLSHIRA----VD-----------GIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 86 ---~~~~i~lvD~~gl~~---~~~~~~---~l~~~~l~~l~~----ad-----------~ll~vvda~-~~~~il~ld~~ 140 (406)
....+++.|...... +..... .....+++.+.. .+ -.+.+++++ .+|+++++|
T Consensus 411 ~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllD-- 488 (623)
T PRK10261 411 YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIAD-- 488 (623)
T ss_pred hhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 233334433322110 000000 000011111111 00 014455666 799999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|+.....++..+..+.+ .....+.. .+|++..+..+||++ .+|.+|+++..++
T Consensus 489 -EPts~LD~~~~~~i~~ll~~l~~---~~g~tvi~-isHdl~~v~~~~dri-~vl~~G~iv~~g~ 547 (623)
T PRK10261 489 -EAVSALDVSIRGQIINLLLDLQR---DFGIAYLF-ISHDMAVVERISHRV-AVMYLGQIVEIGP 547 (623)
T ss_pred -CCcccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 99999999986544433222111 10111111 239999999999999 8899999876554
No 253
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=9.3e-12 Score=118.41 Aligned_cols=174 Identities=14% Similarity=0.180 Sum_probs=97.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|...+ .| ..|++|.|.++|.++.. .. ..|.+|...
T Consensus 22 ~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~p---~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 22 GISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDD---IE---NIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccc---cc---CCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 34556889999999999999999999999998210 00 01478999998875421 11 134454421
Q ss_pred CceeEEEeecccccccc---CCCCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeecCCC
Q 015465 87 PAFLEIHDIAGLVRGAH---EGQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~---~~~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld~~~ 141 (406)
....++.|...+..... ............++..+ -.+.+++++ .+|+++++|
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllD--- 172 (251)
T PRK14251 96 PFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLD--- 172 (251)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEec---
Confidence 11123333222110000 00000000000000000 014455665 799999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|....+.....+..+ .. ...+ .-.+|+...+.++|+++ .+|++|++...++
T Consensus 173 EP~~~LD~~~~~~l~~~l~~~----~~-~~ti-iiisH~~~~~~~~~d~i-~~l~~G~i~~~~~ 229 (251)
T PRK14251 173 EPTSALDPISSSEIEETLMEL----KH-QYTF-IMVTHNLQQAGRISDQT-AFLMNGDLIEAGP 229 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHH----Hc-CCeE-EEEECCHHHHHhhcCEE-EEEECCEEEEeCC
Confidence 999999998865443332211 10 1111 11239999999999999 7889998876543
No 254
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.21 E-value=1.2e-11 Score=113.45 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=74.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh------hhccCCC-CcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKS-AVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~p~~-~~~~ 88 (406)
.....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.++. ....
T Consensus 18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 86 (198)
T TIGR01189 18 GLSFTLNAGEALQVTGPNGIGKTTLLRILAGL-----------LRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKP 86 (198)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCEEcccchHHhhhheEEeccCccccc
Confidence 34455789999999999999999999999999 6789999999887643211 1344443 2222
Q ss_pred eeEEEeeccccccccCCCC-CcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCchHHHHHH
Q 015465 89 FLEIHDIAGLVRGAHEGQG-LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~-l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~ 152 (406)
.+++.|...+......... ....+++.+... .-.+.+++++ .+|+++++| ||++++|....
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~~~ 163 (198)
T TIGR01189 87 ELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILD---EPTTALDKAGV 163 (198)
T ss_pred CCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHH
Confidence 2344443332211110000 000111111000 0114456666 799999999 99999998875
Q ss_pred H
Q 015465 153 E 153 (406)
Q Consensus 153 e 153 (406)
+
T Consensus 164 ~ 164 (198)
T TIGR01189 164 A 164 (198)
T ss_pred H
Confidence 3
No 255
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=5.9e-12 Score=119.77 Aligned_cols=172 Identities=17% Similarity=0.243 Sum_probs=99.7
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCC---ceeEEEcCCcchhh-------h--hhhccC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP---NEARVNIPDERFEW-------L--CQLFKP 82 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p---~~G~i~v~g~~~~~-------l--~~~~~p 82 (406)
.+...++.+|++++|+|+||||||||+++|+|... ..| ++|.|.++|.++.. + ...|.|
T Consensus 22 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~ 92 (252)
T PRK14239 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND---------LNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVF 92 (252)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc---------cCCCCCccceEEECCEECcCcccchHhhhhcEEEEe
Confidence 34456688999999999999999999999999721 124 58999998875421 1 123556
Q ss_pred CCCcCceeEEEeeccccc---cccCCCCCcchhhhhHHhh----------h-----------chhhhhccc-CCCceEee
Q 015465 83 KSAVPAFLEIHDIAGLVR---GAHEGQGLGNSFLSHIRAV----------D-----------GIFHVLRAF-EDPDIIHV 137 (406)
Q Consensus 83 ~~~~~~~i~lvD~~gl~~---~~~~~~~l~~~~l~~l~~a----------d-----------~ll~vvda~-~~~~il~l 137 (406)
|.......++.|...+.. +..............++.. + -.+.++++. .+|+++++
T Consensus 93 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 172 (252)
T PRK14239 93 QQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILL 172 (252)
T ss_pred cCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 552211234444332210 0000000000000000000 0 114455555 79999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 138 d~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
| ||++++|....+.....+..+ .. ...+.. .+|+...+..+|+++ .+|++|++...++
T Consensus 173 D---EPt~~LD~~~~~~l~~~l~~~----~~-~~tii~-~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 230 (252)
T PRK14239 173 D---EPTSALDPISAGKIEETLLGL----KD-DYTMLL-VTRSMQQASRISDRT-GFFLDGDLIEYND 230 (252)
T ss_pred c---CCccccCHHHHHHHHHHHHHH----hh-CCeEEE-EECCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9 999999998864443322211 10 111111 239999999999999 8889998876554
No 256
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.21 E-value=4.2e-12 Score=132.66 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=99.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCC--ceeEEEcCCcchhhh--------hhhccCCC-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEWL--------CQLFKPKS- 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p--~~G~i~v~g~~~~~l--------~~~~~p~~- 84 (406)
+..-.+.+|+++||+|+||||||||+++|+|. ..| ++|.|.++|.++... ...|.||.
T Consensus 19 ~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~-----------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 87 (500)
T TIGR02633 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGV-----------YPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQEL 87 (500)
T ss_pred ceEEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeecc
Confidence 44556889999999999999999999999998 444 799999988654321 12355554
Q ss_pred CcCceeEEEeecccccccc------CCC---CCcchhhhhHHh---------------hhchhhhhccc-CCCceEeecC
Q 015465 85 AVPAFLEIHDIAGLVRGAH------EGQ---GLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~~~------~~~---~l~~~~l~~l~~---------------ad~ll~vvda~-~~~~il~ld~ 139 (406)
.....+++.|...+..... ... .....+++.+.. -.-.+.+++++ .+|+++++|
T Consensus 88 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLD- 166 (500)
T TIGR02633 88 TLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILD- 166 (500)
T ss_pred ccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEe-
Confidence 2222233333322211000 000 000001111000 00013455555 689999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|....+.....+..+ ......+ .-.+|+...+..+||++ .+|++|+++..+.
T Consensus 167 --EPt~~LD~~~~~~l~~~l~~l----~~~g~tv-iiitHd~~~~~~~~d~i-~~l~~G~i~~~~~ 224 (500)
T TIGR02633 167 --EPSSSLTEKETEILLDIIRDL----KAHGVAC-VYISHKLNEVKAVCDTI-CVIRDGQHVATKD 224 (500)
T ss_pred --CCCCCCCHHHHHHHHHHHHHH----HhCCCEE-EEEeCcHHHHHHhCCEE-EEEeCCeEeeecC
Confidence 999999999864443322111 1001111 11139999999999999 8889998876543
No 257
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=6.4e-12 Score=124.24 Aligned_cols=176 Identities=13% Similarity=0.144 Sum_probs=100.9
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----------hhccCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----------QLFKPK 83 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----------~~~~p~ 83 (406)
.+....+.+|+++||+|+||||||||+++|+|...+ .-.|++|.|.++|.++..+. ..|.+|
T Consensus 24 ~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~-------~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q 96 (326)
T PRK11022 24 DRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDY-------PGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQ 96 (326)
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-------CCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 344567889999999999999999999999998310 01257899999997653221 134444
Q ss_pred CC---cCceeEEEeec----cccccccCC--CCCcchhhhhHHhhh-----------------chhhhhccc-CCCceEe
Q 015465 84 SA---VPAFLEIHDIA----GLVRGAHEG--QGLGNSFLSHIRAVD-----------------GIFHVLRAF-EDPDIIH 136 (406)
Q Consensus 84 ~~---~~~~i~lvD~~----gl~~~~~~~--~~l~~~~l~~l~~ad-----------------~ll~vvda~-~~~~il~ 136 (406)
.. ....+++.+.. ....+.... ......+++.+...+ --+.+++|+ .+|++++
T Consensus 97 ~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~lli 176 (326)
T PRK11022 97 DPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLI 176 (326)
T ss_pred CchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 42 22222211111 000000000 000011111111100 013455555 6999999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+| ||++.+|......++.-+..+.+ +....+ .-.+|++..+..+||+| .+|..|+++..++
T Consensus 177 lD---EPts~LD~~~~~~il~lL~~l~~---~~g~ti-l~iTHdl~~~~~~adri-~vm~~G~ive~g~ 237 (326)
T PRK11022 177 AD---EPTTALDVTIQAQIIELLLELQQ---KENMAL-VLITHDLALVAEAAHKI-IVMYAGQVVETGK 237 (326)
T ss_pred Ee---CCCCCCCHHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99 99999999987554443322211 001111 11239999999999999 8999999886654
No 258
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=2.1e-11 Score=107.64 Aligned_cols=136 Identities=18% Similarity=0.276 Sum_probs=81.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEee
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~ 95 (406)
.....+.+|+.++|+|+||+|||||+++|+|. ..|+.|.+.++|..+..... ......+.++.-
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~-----------~~~~~G~i~~~~~~~~~~~~-----~~~~~~i~~~~q 80 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL-----------LKPTSGEILIDGKDIAKLPL-----EELRRRIGYVPQ 80 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCEEcccCCH-----HHHHhceEEEee
Confidence 34456889999999999999999999999999 67899999998864321100 000000111100
Q ss_pred ccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHH---H
Q 015465 96 AGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK---S 172 (406)
Q Consensus 96 ~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~---~ 172 (406)
. +.|++ +.+..+-+++. +|+++++| ||+.++|........ +.+..+.. .
T Consensus 81 ------l----S~G~~--~r~~l~~~l~~------~~~i~ilD---Ep~~~lD~~~~~~l~-------~~l~~~~~~~~t 132 (157)
T cd00267 81 ------L----SGGQR--QRVALARALLL------NPDLLLLD---EPTSGLDPASRERLL-------ELLRELAEEGRT 132 (157)
T ss_pred ------C----CHHHH--HHHHHHHHHhc------CCCEEEEe---CCCcCCCHHHHHHHH-------HHHHHHHHCCCE
Confidence 1 12222 33444444433 79999999 999999988753222 22222211 1
Q ss_pred hhhccccchHHHHHHHHHHHHHhhC
Q 015465 173 MKRSNDKQLKIEHELCQRVKAWLQD 197 (406)
Q Consensus 173 ~~~~~~h~~~~v~~l~~~i~~~L~~ 197 (406)
+ .-.+|+...+..+|+++ ..+.+
T Consensus 133 i-i~~sh~~~~~~~~~d~i-~~l~~ 155 (157)
T cd00267 133 V-IIVTHDPELAELAADRV-IVLKD 155 (157)
T ss_pred E-EEEeCCHHHHHHhCCEE-EEEeC
Confidence 1 11138888888877776 44433
No 259
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.21 E-value=7.7e-12 Score=130.72 Aligned_cols=168 Identities=16% Similarity=0.227 Sum_probs=98.5
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------h--hhccCCC-Cc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKS-AV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~p~~-~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|. ..
T Consensus 22 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~ 90 (501)
T PRK11288 22 DISFDCRAGQVHALMGENGAGKSTLLKILSGN-----------YQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHL 90 (501)
T ss_pred eeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhc
Confidence 44556889999999999999999999999999 678999999988664211 1 2355554 22
Q ss_pred CceeEEEeecccccccc-CC----CC---CcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCC
Q 015465 87 PAFLEIHDIAGLVRGAH-EG----QG---LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~-~~----~~---l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP 143 (406)
...+++.|...+..... .+ .. ....+++.+... .-.+.+++++ .+|+++++| ||
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EP 167 (501)
T PRK11288 91 VPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFD---EP 167 (501)
T ss_pred cCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEc---CC
Confidence 22233333322211000 00 00 000001110000 0013455555 689999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcccc
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~ 203 (406)
++.+|....+.....+..+ .+-...+ .-.+|+...+..+|+++ .+|++|+++..
T Consensus 168 t~~LD~~~~~~l~~~l~~~----~~~g~ti-iiitHd~~~~~~~~d~i-~~l~~G~i~~~ 221 (501)
T PRK11288 168 TSSLSAREIEQLFRVIREL----RAEGRVI-LYVSHRMEEIFALCDAI-TVFKDGRYVAT 221 (501)
T ss_pred CCCCCHHHHHHHHHHHHHH----HhCCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEee
Confidence 9999999864433322111 1001111 11139999999999999 88899987643
No 260
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.21 E-value=5.2e-12 Score=134.46 Aligned_cols=158 Identities=18% Similarity=0.264 Sum_probs=99.6
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCceeE
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAFLE 91 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~i~ 91 (406)
-++++|++++|+|++|||||||++.|+|. . |++|.|.++|.++..+. ..|.||...-..-+
T Consensus 371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~-----------~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~T 438 (588)
T PRK11174 371 FTLPAGQRIALVGPSGAGKTSLLNALLGF-----------L-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGT 438 (588)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------C-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcC
Confidence 45789999999999999999999999999 7 88999999998765432 24777764333334
Q ss_pred EEeeccccccccCCCCCcchhhhhHHhh-------------h---------------chhhhhccc-CCCceEeecCCCC
Q 015465 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAV-------------D---------------GIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 92 lvD~~gl~~~~~~~~~l~~~~l~~l~~a-------------d---------------~ll~vvda~-~~~~il~ld~~~d 142 (406)
+.|+..+.......+ ++.+.++.+ | --+.++||+ .+|+++++| |
T Consensus 439 I~eNI~~g~~~~~~e----ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLD---E 511 (588)
T PRK11174 439 LRDNVLLGNPDASDE----QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLD---E 511 (588)
T ss_pred HHHHhhcCCCCCCHH----HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 444444332100000 000000000 0 014456666 799999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++.+|..+++.+...+ ..+.+ .+ .-.+|....+ ..+|+| ..|++|+++..|+
T Consensus 512 ~TSaLD~~te~~i~~~l-------~~~~~~~Tv-IiItHrl~~i-~~aD~I-ivl~~G~i~e~G~ 566 (588)
T PRK11174 512 PTASLDAHSEQLVMQAL-------NAASRRQTT-LMVTHQLEDL-AQWDQI-WVMQDGQIVQQGD 566 (588)
T ss_pred CccCCCHHHHHHHHHHH-------HHHhCCCEE-EEEecChHHH-HhCCEE-EEEeCCeEeecCC
Confidence 99999999875443322 11110 00 1123888654 458888 7789998876665
No 261
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.1e-11 Score=129.16 Aligned_cols=166 Identities=14% Similarity=0.180 Sum_probs=96.1
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------h--hhccCCCC----
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSA---- 85 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~p~~~---- 85 (406)
...+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.|+..
T Consensus 268 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~ 336 (491)
T PRK10982 268 SFDLHKGEILGIAGLVGAKRTDIVETLFGI-----------REKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTG 336 (491)
T ss_pred eEEEeCCcEEEEecCCCCCHHHHHHHHcCC-----------CcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCC
Confidence 446789999999999999999999999999 679999999988654321 1 23455432
Q ss_pred cCceeEE-----Eeecccc-c--cc-cCC--CCCcchhhhhHHhh----h-----------chhhhhccc-CCCceEeec
Q 015465 86 VPAFLEI-----HDIAGLV-R--GA-HEG--QGLGNSFLSHIRAV----D-----------GIFHVLRAF-EDPDIIHVD 138 (406)
Q Consensus 86 ~~~~i~l-----vD~~gl~-~--~~-~~~--~~l~~~~l~~l~~a----d-----------~ll~vvda~-~~~~il~ld 138 (406)
+...+++ .+..... . +. ... ......++..+... + -.+.+++++ .+|+++++|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLD 416 (491)
T PRK10982 337 IYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLD 416 (491)
T ss_pred cccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEc
Confidence 1111211 1111000 0 00 000 00000011111000 0 013345555 689999999
Q ss_pred CCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcccc
Q 015465 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (406)
Q Consensus 139 ~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~ 203 (406)
||++++|+...+....-+..+ ......+ .-.+|+...+..+|+++ .+|.+|+++..
T Consensus 417 ---EPt~gLD~~~~~~~~~~l~~l----~~~~~tv-i~vsHd~~~~~~~~d~v-~~l~~g~i~~~ 472 (491)
T PRK10982 417 ---EPTRGIDVGAKFEIYQLIAEL----AKKDKGI-IIISSEMPELLGITDRI-LVMSNGLVAGI 472 (491)
T ss_pred ---CCCcccChhHHHHHHHHHHHH----HHCCCEE-EEECCChHHHHhhCCEE-EEEECCEEEEE
Confidence 999999999865443322111 1101111 11139999999999999 88888988743
No 262
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.20 E-value=1.1e-11 Score=114.42 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=75.4
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh------hhccCCC-CcC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKS-AVP 87 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~p~~-~~~ 87 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.++. ...
T Consensus 18 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 86 (204)
T PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL-----------ARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIK 86 (204)
T ss_pred ecceEEECCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEcccchHHhhhheEEeCCccccC
Confidence 344566889999999999999999999999999 6799999999987643211 1233333 122
Q ss_pred ceeEEEeeccccccccC--CCCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCchHHHH
Q 015465 88 AFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~--~~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld~i 150 (406)
..+++.|...+...... .......+++.+... .-.+.+++++ .+|+++++| ||++++|..
T Consensus 87 ~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~ 163 (204)
T PRK13538 87 TELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD---EPFTAIDKQ 163 (204)
T ss_pred cCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHH
Confidence 22333333222111000 000000111111000 0114455665 799999999 999999999
Q ss_pred HHHHh
Q 015465 151 SAELR 155 (406)
Q Consensus 151 ~~el~ 155 (406)
..+..
T Consensus 164 ~~~~l 168 (204)
T PRK13538 164 GVARL 168 (204)
T ss_pred HHHHH
Confidence 86443
No 263
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=6e-12 Score=124.56 Aligned_cols=172 Identities=14% Similarity=0.171 Sum_probs=103.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------h--hhhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------L--CQLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l--~~~~~p~~~~ 86 (406)
+....+.+|+++||+|+||||||||+++|+|...... -.|++|.|.++|.++.. + ...|.||...
T Consensus 100 ~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~------~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 100 DLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIE------GTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC------CCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 3445688999999999999999999999999831000 02678999999987631 1 1245666533
Q ss_pred CceeEEEeecccccccc--CCCCCcc-hhhhhHHhh---------------------hchhhhhccc-CCCceEeecCCC
Q 015465 87 PAFLEIHDIAGLVRGAH--EGQGLGN-SFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~--~~~~l~~-~~l~~l~~a---------------------d~ll~vvda~-~~~~il~ld~~~ 141 (406)
....++.|...+..... ....... .....++.+ ...+.+++|+ .+|+++++|
T Consensus 174 ~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLD--- 250 (329)
T PRK14257 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMD--- 250 (329)
T ss_pred cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEe---
Confidence 32344444443221100 0000000 000011111 0114566766 799999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|.........-+ ..+. ..+ .-.+|.+..+.++||++ .+|++|+++..|+
T Consensus 251 EPts~LD~~~~~~i~~~i-------~~l~~~~Ti-i~iTH~l~~i~~~~Dri-ivl~~G~i~e~g~ 307 (329)
T PRK14257 251 EPTSALDPIATAKIEELI-------LELKKKYSI-IIVTHSMAQAQRISDET-VFFYQGWIEEAGE 307 (329)
T ss_pred CCcccCCHHHHHHHHHHH-------HHHhcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999998754432221 1111 111 11249999999999999 8999999886654
No 264
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.20 E-value=3.5e-11 Score=107.52 Aligned_cols=111 Identities=17% Similarity=0.234 Sum_probs=71.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEee
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~ 95 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.+.+++.+ ...|.+|.......++.|.
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~~~~----~i~~~~q~~~~~~~tv~~n 83 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGL-----------WPWGSGRIGMPEGE----DLLFLPQRPYLPLGTLREQ 83 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCCc----eEEEECCCCccccccHHHH
Confidence 44566889999999999999999999999999 67899999987641 1234444421112233333
Q ss_pred ccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHH
Q 015465 96 AGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAEL 154 (406)
Q Consensus 96 ~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el 154 (406)
..+. .....+.++ .+++..+.+++ .+|+++++| ||++.+|....+.
T Consensus 84 l~~~--~~~~LS~G~--~~rv~laral~------~~p~~lllD---EPt~~LD~~~~~~ 129 (166)
T cd03223 84 LIYP--WDDVLSGGE--QQRLAFARLLL------HKPKFVFLD---EATSALDEESEDR 129 (166)
T ss_pred hhcc--CCCCCCHHH--HHHHHHHHHHH------cCCCEEEEE---CCccccCHHHHHH
Confidence 2211 001111122 24444444444 499999999 9999999987543
No 265
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.20 E-value=1.2e-11 Score=114.90 Aligned_cols=157 Identities=22% Similarity=0.292 Sum_probs=92.1
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-----------hccCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----------LFKPK 83 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----------~~~p~ 83 (406)
....-.+++|+.++|+||+|||||||+|+|.|+ ..|++|.+.++|.++..+.. +|..|
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l-----------d~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ 90 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL-----------DKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQ 90 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECc
Confidence 344456889999999999999999999999999 67999999999976543321 23333
Q ss_pred C-CcCceeEEEeeccc---cccccC--------------------------CCCCcchhhhhHHhhhchhhhhcccCCCc
Q 015465 84 S-AVPAFLEIHDIAGL---VRGAHE--------------------------GQGLGNSFLSHIRAVDGIFHVLRAFEDPD 133 (406)
Q Consensus 84 ~-~~~~~i~lvD~~gl---~~~~~~--------------------------~~~l~~~~l~~l~~ad~ll~vvda~~~~~ 133 (406)
. ..-..+++.+...+ ..+... ..+-|++ +++..|.+++ .+|+
T Consensus 91 ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqq--QRVAIARAL~------~~P~ 162 (226)
T COG1136 91 NFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQ--QRVAIARALI------NNPK 162 (226)
T ss_pred cCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHH--HHHHHHHHHh------cCCC
Confidence 3 22223343333322 111110 0011111 3333344444 5999
Q ss_pred eEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCC
Q 015465 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (406)
Q Consensus 134 il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~ 199 (406)
+++.| ||+..+|.-+.+.++..+..+.+. ..+.+ .-.+|+.. +...|||+ ..|.+|+
T Consensus 163 iilAD---EPTgnLD~~t~~~V~~ll~~~~~~---~g~ti-i~VTHd~~-lA~~~dr~-i~l~dG~ 219 (226)
T COG1136 163 IILAD---EPTGNLDSKTAKEVLELLRELNKE---RGKTI-IMVTHDPE-LAKYADRV-IELKDGK 219 (226)
T ss_pred eEEee---CccccCChHHHHHHHHHHHHHHHh---cCCEE-EEEcCCHH-HHHhCCEE-EEEeCCe
Confidence 99999 999999998865444332221110 00011 11237664 44577877 6667675
No 266
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.20 E-value=4.9e-12 Score=132.11 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=98.4
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCC-ceeEEEcCCcchhh------hh--hhccCCCC--
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDERFEW------LC--QLFKPKSA-- 85 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p-~~G~i~v~g~~~~~------l~--~~~~p~~~-- 85 (406)
....+.+|+++||+|+||||||||+++|+|. ..| ++|.|.++|.++.. +. ..|.||..
T Consensus 279 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-----------~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 347 (500)
T TIGR02633 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGA-----------YPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKR 347 (500)
T ss_pred ceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC-----------CCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhh
Confidence 3446789999999999999999999999999 664 79999998865421 11 24555542
Q ss_pred --cCceeEEEeeccccc--cc------cCC--CCCcchhhhhHHhhh---------------chhhhhccc-CCCceEee
Q 015465 86 --VPAFLEIHDIAGLVR--GA------HEG--QGLGNSFLSHIRAVD---------------GIFHVLRAF-EDPDIIHV 137 (406)
Q Consensus 86 --~~~~i~lvD~~gl~~--~~------~~~--~~l~~~~l~~l~~ad---------------~ll~vvda~-~~~~il~l 137 (406)
....+++.|...+.. .. ... ......+++.+...+ -.+.+++++ .+|+++++
T Consensus 348 ~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL 427 (500)
T TIGR02633 348 HGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLIL 427 (500)
T ss_pred CCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 222222222221110 00 000 000001111111100 014455555 68999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcccc
Q 015465 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (406)
Q Consensus 138 d~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~ 203 (406)
| ||++++|+...+.....+..+. .....+ .-.+|+...+..+|+++ .+|.+|+++..
T Consensus 428 D---EPt~~LD~~~~~~l~~~l~~l~----~~g~tv-iivsHd~~~~~~~~d~v-~~l~~G~i~~~ 484 (500)
T TIGR02633 428 D---EPTRGVDVGAKYEIYKLINQLA----QEGVAI-IVVSSELAEVLGLSDRV-LVIGEGKLKGD 484 (500)
T ss_pred c---CCCCCcCHhHHHHHHHHHHHHH----hCCCEE-EEECCCHHHHHHhCCEE-EEEECCEEEEE
Confidence 9 9999999998655443322111 101111 11239999999999999 78888988754
No 267
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=7e-12 Score=119.89 Aligned_cols=166 Identities=20% Similarity=0.243 Sum_probs=97.1
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccC--C---ceeEEEcCCcchhh-------hh--hhccC
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--P---NEARVNIPDERFEW-------LC--QLFKP 82 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~--p---~~G~i~v~g~~~~~-------l~--~~~~p 82 (406)
....+.+|++++|+|+||||||||+++|+|. .. | ++|.|.++|.++.. +. ..|.|
T Consensus 31 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~ 99 (259)
T PRK14274 31 INLSIPENEVTAIIGPSGCGKSTFIKTLNLM-----------IQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVF 99 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhh-----------ccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEe
Confidence 3455889999999999999999999999998 33 3 58999998876531 11 13555
Q ss_pred CCCcCceeEEEeeccccccccC--C-CCCcc---hhhhhHHhh----h--------------chhhhhccc-CCCceEee
Q 015465 83 KSAVPAFLEIHDIAGLVRGAHE--G-QGLGN---SFLSHIRAV----D--------------GIFHVLRAF-EDPDIIHV 137 (406)
Q Consensus 83 ~~~~~~~i~lvD~~gl~~~~~~--~-~~l~~---~~l~~l~~a----d--------------~ll~vvda~-~~~~il~l 137 (406)
|.......++.|...+...... . ..... .+++.+... + -.+.+++++ .+|+++++
T Consensus 100 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llll 179 (259)
T PRK14274 100 QKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLM 179 (259)
T ss_pred cCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5421111133332221110000 0 00000 001111000 0 014455665 79999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 138 d~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
| ||++++|.........-+ ..+.+ .+ .-.+|+...+..+|+++ .+|++|+++..++
T Consensus 180 D---EPt~~LD~~~~~~l~~~l-------~~~~~~~ti-iivtH~~~~~~~~~d~i-~~l~~G~i~~~g~ 237 (259)
T PRK14274 180 D---EPTSALDPVSTRKIEELI-------LKLKEKYTI-VIVTHNMQQAARVSDQT-AFFYMGELVECND 237 (259)
T ss_pred c---CCcccCCHHHHHHHHHHH-------HHHhcCCEE-EEEEcCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9 999999998864443322 22211 11 11239999999999998 8889998876553
No 268
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.20 E-value=8e-12 Score=119.40 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=34.6
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEE
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN 67 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~ 67 (406)
.+.+|++++|+|+||||||||+++|+|. ..|++|.|.
T Consensus 22 ~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl-----------~~p~~G~I~ 58 (255)
T cd03236 22 VPREGQVLGLVGPNGIGKSTALKILAGK-----------LKPNLGKFD 58 (255)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCCceEe
Confidence 4789999999999999999999999999 779999995
No 269
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.20 E-value=1.4e-11 Score=116.84 Aligned_cols=170 Identities=16% Similarity=0.116 Sum_probs=93.3
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh--------hhccCCCCc
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKSAV 86 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--------~~~~p~~~~ 86 (406)
.+....+.+|++++|+|+||||||||+++|+|... ..|++|.|.++|.++..+. ..|.++...
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 88 (248)
T PRK09580 18 RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRED---------YEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPV 88 (248)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCcc---------CCCCceEEEECCCccccCCHHHHhhcceEEEecCch
Confidence 34455688999999999999999999999999820 1488999999987543211 123333311
Q ss_pred -CceeEEEeecccc-cc---ccCCC-----CCcchhhhhHH---h----------------hhchhhhhccc-CCCceEe
Q 015465 87 -PAFLEIHDIAGLV-RG---AHEGQ-----GLGNSFLSHIR---A----------------VDGIFHVLRAF-EDPDIIH 136 (406)
Q Consensus 87 -~~~i~lvD~~gl~-~~---~~~~~-----~l~~~~l~~l~---~----------------ad~ll~vvda~-~~~~il~ 136 (406)
...++........ .. ..... .+.......+. . ..-.+.+++++ .+|++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ill 168 (248)
T PRK09580 89 EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI 168 (248)
T ss_pred hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 1000000000000 00 00000 00000000000 0 00113455555 6999999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHH---HhhhccccchHHHHHH-HHHHHHHhhCCCccccCC
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK---SMKRSNDKQLKIEHEL-CQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~---~~~~~~~h~~~~v~~l-~~~i~~~L~~g~~~~~~~ 205 (406)
+| ||++.+|....+..... +..+.+ .+.. .+|+...+..+ ++++ .+|++|++...++
T Consensus 169 LD---EPt~~LD~~~~~~l~~~-------l~~l~~~~~tiii-~sH~~~~~~~~~~d~i-~~l~~g~i~~~g~ 229 (248)
T PRK09580 169 LD---ESDSGLDIDALKIVADG-------VNSLRDGKRSFII-VTHYQRILDYIKPDYV-HVLYQGRIVKSGD 229 (248)
T ss_pred Ee---CCCccCCHHHHHHHHHH-------HHHHHhCCCEEEE-EeCCHHHHHhhhCCEE-EEEECCeEEEeCC
Confidence 99 99999999885433222 222211 1111 13888888777 7877 7788898876654
No 270
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.19 E-value=4.1e-12 Score=138.10 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=101.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+..-.+++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. ..|.||.....
T Consensus 492 ~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf 560 (708)
T TIGR01193 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF-----------FQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIF 560 (708)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceeh
Confidence 33455789999999999999999999999999 7899999999998875533 14677663332
Q ss_pred eeEEEeeccccccccCCCCCcchhhhhHHh----------------------------hhchhhhhccc-CCCceEeecC
Q 015465 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRA----------------------------VDGIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~----------------------------ad~ll~vvda~-~~~~il~ld~ 139 (406)
.-++.|..-+...+.... .++.+.++. -.-.+.++||+ .+|+++++|
T Consensus 561 ~gTI~eNi~l~~~~~~~~---~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLD- 636 (708)
T TIGR01193 561 SGSILENLLLGAKENVSQ---DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILD- 636 (708)
T ss_pred hHHHHHHHhccCCCCCCH---HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe-
Confidence 333333333321000000 000000000 00014456666 699999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHH-HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVE-KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~-~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|..+++.+...+ ..+. +++ .-.+|....+ ..+|+| ..|++|+++..|+
T Consensus 637 --E~Ts~LD~~te~~i~~~L-------~~~~~~T~-IiitHr~~~~-~~~D~i-~~l~~G~i~~~G~ 691 (708)
T TIGR01193 637 --ESTSNLDTITEKKIVNNL-------LNLQDKTI-IFVAHRLSVA-KQSDKI-IVLDHGKIIEQGS 691 (708)
T ss_pred --CccccCCHHHHHHHHHHH-------HHhcCCEE-EEEecchHHH-HcCCEE-EEEECCEEEEECC
Confidence 999999998865443322 1111 111 1123888654 568998 8889999887665
No 271
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=7.3e-12 Score=119.12 Aligned_cols=170 Identities=11% Similarity=0.131 Sum_probs=98.4
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCC-----ceeEEEcCCcchhh-------h--hhhc
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------L--CQLF 80 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p-----~~G~i~v~g~~~~~-------l--~~~~ 80 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..| ++|.|.++|.++.. . ...|
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 89 (252)
T PRK14272 21 KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM-----------HDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGM 89 (252)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCcCCCCceeEEECCEEcccCccCHHHhhceeEE
Confidence 344456889999999999999999999999998 344 37999998866431 1 1235
Q ss_pred cCCCC-cCceeEEEeecccccccc---CCCCCcchhhhhHHhh----------h-----------chhhhhccc-CCCce
Q 015465 81 KPKSA-VPAFLEIHDIAGLVRGAH---EGQGLGNSFLSHIRAV----------D-----------GIFHVLRAF-EDPDI 134 (406)
Q Consensus 81 ~p~~~-~~~~i~lvD~~gl~~~~~---~~~~l~~~~l~~l~~a----------d-----------~ll~vvda~-~~~~i 134 (406)
.++.. .+...++.|...+..... ............++.. + -.+.+++++ .+|++
T Consensus 90 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 169 (252)
T PRK14272 90 VFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEI 169 (252)
T ss_pred EeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 55542 222234444332211000 0000000000000000 0 013455555 79999
Q ss_pred EeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 135 l~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+++| ||++++|....+.....+.. +.. ...+ .-.+|+...+..+|+++ ..|.+|++...++
T Consensus 170 lllD---EP~~~LD~~~~~~l~~~l~~----~~~-~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 230 (252)
T PRK14272 170 LLMD---EPTSALDPASTARIEDLMTD----LKK-VTTI-IIVTHNMHQAARVSDTT-SFFLVGDLVEHGP 230 (252)
T ss_pred EEEe---CCCccCCHHHHHHHHHHHHH----Hhc-CCeE-EEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999 99999999886443332211 110 1111 11139999999999999 8889998876543
No 272
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.19 E-value=5.2e-12 Score=132.87 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=101.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------h--hhccCCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKSA 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~p~~~ 85 (406)
+....+.+|+++||+|+||||||||+++|+|. . |++|.|.++|.++... . ..|.+|..
T Consensus 304 ~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl-----------~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 371 (529)
T PRK15134 304 NISFTLRPGETLGLVGESGSGKSTTGLALLRL-----------I-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP 371 (529)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHhCc-----------C-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCc
Confidence 34556789999999999999999999999998 4 4789999988654321 1 23555542
Q ss_pred ---cCceeEEEeecccccc-----ccCC--CCCcchhhhhHHhh----h-----------chhhhhccc-CCCceEeecC
Q 015465 86 ---VPAFLEIHDIAGLVRG-----AHEG--QGLGNSFLSHIRAV----D-----------GIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 86 ---~~~~i~lvD~~gl~~~-----~~~~--~~l~~~~l~~l~~a----d-----------~ll~vvda~-~~~~il~ld~ 139 (406)
....+++.|...+... .... ......+++.+... + -.+.+++++ .+|+++++|
T Consensus 372 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD- 450 (529)
T PRK15134 372 NSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD- 450 (529)
T ss_pred hhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEee-
Confidence 2333344443322100 0000 00000111111110 0 014455665 789999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|+...+.....+..+.+ .....+.. .+|++..+..+|+++ .+|++|+++..++
T Consensus 451 --EPt~~LD~~~~~~l~~~l~~~~~---~~~~tvi~-vsHd~~~~~~~~d~i-~~l~~G~i~~~~~ 509 (529)
T PRK15134 451 --EPTSSLDKTVQAQILALLKSLQQ---KHQLAYLF-ISHDLHVVRALCHQV-IVLRQGEVVEQGD 509 (529)
T ss_pred --CCccccCHHHHHHHHHHHHHHHH---hhCCEEEE-EeCCHHHHHHhcCeE-EEEECCEEEEEcC
Confidence 99999999987555443322211 10111111 239999999999999 8899998876553
No 273
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.19 E-value=1.1e-11 Score=116.12 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=42.9
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~ 74 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.
T Consensus 31 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~ 79 (226)
T cd03248 31 QDVSFTLHPGEVTALVGPSGSGKSTVVALLENF-----------YQPQGGQVLLDGKPIS 79 (226)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCcEEEECCCchH
Confidence 444566889999999999999999999999999 6799999999987653
No 274
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.19 E-value=7.2e-12 Score=135.92 Aligned_cols=162 Identities=19% Similarity=0.241 Sum_probs=101.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+..-++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. ..|.||.....
T Consensus 483 ~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl-----------~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf 551 (694)
T TIGR03375 483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL-----------YQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF 551 (694)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhh
Confidence 33455789999999999999999999999999 7899999999998775432 24666664333
Q ss_pred eeEEEeeccccccccCCCCCcchhhhhHHh----------------------------hhchhhhhccc-CCCceEeecC
Q 015465 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRA----------------------------VDGIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~----------------------------ad~ll~vvda~-~~~~il~ld~ 139 (406)
.-++.|...+.......+ ++.+.++. -.-.+.++||+ .+|+++++|
T Consensus 552 ~~TI~eNi~~~~~~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLD- 626 (694)
T TIGR03375 552 YGTLRDNIALGAPYADDE----EILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLD- 626 (694)
T ss_pred hhhHHHHHhCCCCCCCHH----HHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe-
Confidence 334444333322100000 00000000 00114455665 799999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|..++..+... +.++.+ ++ .-.+|....+ ..+|+| ..|++|+++..|+
T Consensus 627 --E~Ts~LD~~te~~i~~~-------l~~~~~~~T~-iiItHrl~~~-~~~D~i-ivl~~G~i~e~G~ 682 (694)
T TIGR03375 627 --EPTSAMDNRSEERFKDR-------LKRWLAGKTL-VLVTHRTSLL-DLVDRI-IVMDNGRIVADGP 682 (694)
T ss_pred --CCCCCCCHHHHHHHHHH-------HHHHhCCCEE-EEEecCHHHH-HhCCEE-EEEeCCEEEeeCC
Confidence 99999999986544332 221110 00 1123888654 578998 7889999887664
No 275
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.19 E-value=1.1e-11 Score=131.37 Aligned_cols=164 Identities=19% Similarity=0.243 Sum_probs=105.3
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCCCcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~~~~~~ 89 (406)
..-.+++|+++|||||+||||||+++.|.+. .+|++|.|.++|.++..+.. .+.||...-..
T Consensus 348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~-----------~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~ 416 (567)
T COG1132 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL-----------YDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS 416 (567)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec
Confidence 4445889999999999999999999999999 78999999999987755432 36666543333
Q ss_pred eEEEeeccccccccCCCCCcchhhhhHHhh-------------h---------------chhhhhccc-CCCceEeecCC
Q 015465 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAV-------------D---------------GIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~~l~~~~l~~l~~a-------------d---------------~ll~vvda~-~~~~il~ld~~ 140 (406)
-++.|+..+....... ++..+.++.+ | -.+.++||+ .+|+++++|
T Consensus 417 ~TI~~NI~~g~~~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILD-- 490 (567)
T COG1132 417 GTIRENIALGRPDATD----EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILD-- 490 (567)
T ss_pred ccHHHHHhcCCCCCCH----HHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 3444444443221000 0011111110 0 014456666 699999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
||++.+|..++..+...+..+.+. ++. .-.+|.+..+.. +|+| .+|++|+++..|+-
T Consensus 491 -EaTSalD~~tE~~I~~~l~~l~~~-----rT~-iiIaHRlsti~~-aD~I-iVl~~G~i~e~G~h 547 (567)
T COG1132 491 -EATSALDTETEALIQDALKKLLKG-----RTT-LIIAHRLSTIKN-ADRI-IVLDNGRIVERGTH 547 (567)
T ss_pred -ccccccCHHhHHHHHHHHHHHhcC-----CEE-EEEeccHhHHHh-CCEE-EEEECCEEEEecCH
Confidence 999999999976554443211100 000 012388877777 9999 89999998776653
No 276
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.2e-11 Score=117.76 Aligned_cols=174 Identities=15% Similarity=0.155 Sum_probs=99.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCC-C
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKS-A 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~-~ 85 (406)
+....+.+|++++|+|+||||||||+++|+|.... ....|++|.|.++|..+.. +. ..|.||. .
T Consensus 22 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDL------VPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccC------CCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 44456889999999999999999999999998210 0001368999998876531 11 1345554 2
Q ss_pred cCceeEEEeeccccccccC---CCCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeecCC
Q 015465 86 VPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~---~~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld~~ 140 (406)
.....++.|...+...... ...........++..+ -.+.+++++ .+|+++++|
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD-- 173 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMD-- 173 (252)
T ss_pred CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEc--
Confidence 2222333332221100000 0000000001011110 013455555 789999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|....+.....+..+. . ...+ .-.+|+...+..+|+++ .+|.+|++...++
T Consensus 174 -EP~~gLD~~~~~~l~~~l~~~~----~-~~ti-iivsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 230 (252)
T PRK14256 174 -EPASALDPISTLKIEELIEELK----E-KYTI-IIVTHNMQQAARVSDYT-AFFYMGDLVECGE 230 (252)
T ss_pred -CCcccCCHHHHHHHHHHHHHHH----h-CCcE-EEEECCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 9999999988654433322211 1 1111 11239999999999999 7888898876553
No 277
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=7.6e-12 Score=119.05 Aligned_cols=174 Identities=16% Similarity=0.187 Sum_probs=98.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------h--hhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~--~~~~p~~~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|.... .| ..|+.|.|.++|.++... . ..|.||...
T Consensus 23 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~---~~---~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 23 DINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDF---VP---NCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccc---CC---CCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 44556889999999999999999999999998210 00 015789999998765321 1 135555421
Q ss_pred CceeEEEeeccccccccC---C-CCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeecCC
Q 015465 87 PAFLEIHDIAGLVRGAHE---G-QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~---~-~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld~~ 140 (406)
....++.|...+...... . ........+.++..+ -.+.+++++ .+|+++++|
T Consensus 97 ~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD-- 174 (251)
T PRK14244 97 PFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMD-- 174 (251)
T ss_pred cccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 111122332221100000 0 000000001111110 114456666 789999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|....+.....+..+ .+ ...+ .-.+|+...+..+|+++ .+|.+|++...++
T Consensus 175 -EPt~~LD~~~~~~l~~~l~~~----~~-~~ti-iiisH~~~~~~~~~d~i-~~l~~G~i~~~~~ 231 (251)
T PRK14244 175 -EPCSALDPVATNVIENLIQEL----KK-NFTI-IVVTHSMKQAKKVSDRV-AFFQSGRIVEYNT 231 (251)
T ss_pred -CCCccCCHHHHHHHHHHHHHH----hc-CCeE-EEEeCCHHHHHhhcCEE-EEEECCEEEEeCC
Confidence 999999998865443322111 10 1111 11239999999999999 8889998876543
No 278
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.3e-11 Score=117.45 Aligned_cols=169 Identities=18% Similarity=0.216 Sum_probs=97.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCc-----eeEEEcCCcchhh-------hh--hhcc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-----EARVNIPDERFEW-------LC--QLFK 81 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~-----~G~i~v~g~~~~~-------l~--~~~~ 81 (406)
+...++.+|++++|+|+||||||||+++|+|. ..|+ .|.|.++|.++.. +. ..|.
T Consensus 22 ~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v 90 (251)
T PRK14249 22 NINMDFPERQITAIIGPSGCGKSTLLRALNRM-----------NDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMV 90 (251)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCccccCCcccEEEECCEEccccccChHHhhceEEEE
Confidence 34456789999999999999999999999999 4444 6999998865421 11 2355
Q ss_pred CCCCcCceeEEEeecccccc---ccCCCCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEe
Q 015465 82 PKSAVPAFLEIHDIAGLVRG---AHEGQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIH 136 (406)
Q Consensus 82 p~~~~~~~i~lvD~~gl~~~---~~~~~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ 136 (406)
||.......++.|...+... ..........+...++..+ -.+.+++++ .+|++++
T Consensus 91 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 170 (251)
T PRK14249 91 FQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVIL 170 (251)
T ss_pred ecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 55521111233332222110 0000000000000000000 014456666 7999999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+| ||++.+|....+.....+.. +.. ...+ .-.+|+...+..+|+++ .+|++|++...++
T Consensus 171 LD---EPt~~LD~~~~~~l~~~l~~----~~~-~~ti-livsh~~~~~~~~~d~i-~~l~~G~i~~~~~ 229 (251)
T PRK14249 171 MD---EPCSALDPVSTMRIEELMQE----LKQ-NYTI-AIVTHNMQQAARASDWT-GFLLTGDLVEYGR 229 (251)
T ss_pred Ee---CCCccCCHHHHHHHHHHHHH----Hhc-CCEE-EEEeCCHHHHHhhCCEE-EEEeCCeEEEeCC
Confidence 99 99999999886443332211 110 1111 11239999999999999 8889998776543
No 279
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.19 E-value=6.8e-12 Score=132.74 Aligned_cols=166 Identities=17% Similarity=0.226 Sum_probs=97.1
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCC-cCceeEEE
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIH 93 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~-~~~~i~lv 93 (406)
.+..-.+.+|++++|+|+||||||||+++|+|. ..|++|.|.+++.. ...|.||.. ....+++.
T Consensus 24 ~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~-----------~~p~~G~i~~~~~~----~i~~v~Q~~~~~~~~tv~ 88 (556)
T PRK11819 24 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-----------DKEFEGEARPAPGI----KVGYLPQEPQLDPEKTVR 88 (556)
T ss_pred eCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCC----EEEEEecCCCCCCCCcHH
Confidence 344556889999999999999999999999999 67889999876421 123444431 22223333
Q ss_pred eecccccc----------------ccCCC----------------------CCcch---hhhh------------HH-hh
Q 015465 94 DIAGLVRG----------------AHEGQ----------------------GLGNS---FLSH------------IR-AV 119 (406)
Q Consensus 94 D~~gl~~~----------------~~~~~----------------------~l~~~---~l~~------------l~-~a 119 (406)
|...+... ..... ....+ .+.. +. .-
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGq 168 (556)
T PRK11819 89 ENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGE 168 (556)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHH
Confidence 33221100 00000 00000 0000 00 00
Q ss_pred hchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCC
Q 015465 120 DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (406)
Q Consensus 120 d~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g 198 (406)
...+.+++++ .+|+++++| ||++.+|+...+.... .+..+...+.. .+|+...+..+|+++ ..|++|
T Consensus 169 kqrv~la~al~~~p~vlLLD---EPt~~LD~~~~~~l~~-------~L~~~~~tvii-isHd~~~~~~~~d~i-~~l~~g 236 (556)
T PRK11819 169 RRRVALCRLLLEKPDMLLLD---EPTNHLDAESVAWLEQ-------FLHDYPGTVVA-VTHDRYFLDNVAGWI-LELDRG 236 (556)
T ss_pred HHHHHHHHHHhCCCCEEEEc---CCCCcCChHHHHHHHH-------HHHhCCCeEEE-EeCCHHHHHhhcCeE-EEEeCC
Confidence 0113455555 699999999 9999999998543222 12221111111 239999999999999 888999
Q ss_pred Ccc-ccCCCC
Q 015465 199 KDV-RLGDWK 207 (406)
Q Consensus 199 ~~~-~~~~~t 207 (406)
+++ +.|+++
T Consensus 237 ~i~~~~g~~~ 246 (556)
T PRK11819 237 RGIPWEGNYS 246 (556)
T ss_pred EEEEecCCHH
Confidence 875 556544
No 280
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=3.9e-12 Score=133.81 Aligned_cols=162 Identities=17% Similarity=0.222 Sum_probs=95.6
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCC---cCceeEEE
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA---VPAFLEIH 93 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~---~~~~i~lv 93 (406)
....+.+|++++|+||||||||||+++|+|. ..|++|.|.+.+.. ...|.||.. .+..+++.
T Consensus 338 is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-----------~~p~~G~i~~~~~~----~i~~~~q~~~~~~~~~~t~~ 402 (530)
T PRK15064 338 LNLLLEAGERLAIIGENGVGKTTLLRTLVGE-----------LEPDSGTVKWSENA----NIGYYAQDHAYDFENDLTLF 402 (530)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCce----EEEEEcccccccCCCCCcHH
Confidence 3455778999999999999999999999999 67899999887642 123444431 11122333
Q ss_pred eeccccccccCCCCCcchhhhhHHh---------------hhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhh
Q 015465 94 DIAGLVRGAHEGQGLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLK 157 (406)
Q Consensus 94 D~~gl~~~~~~~~~l~~~~l~~l~~---------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~ 157 (406)
|...+.............++..+.. -...+.+++++ .+|+++++| ||++.+|+...+....
T Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l~~ 479 (530)
T PRK15064 403 DWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD---EPTNHMDMESIESLNM 479 (530)
T ss_pred HHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHHHH
Confidence 3221110000000000001111100 00113455555 699999999 9999999998654433
Q ss_pred hHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc-ccCC
Q 015465 158 DIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGD 205 (406)
Q Consensus 158 di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~-~~~~ 205 (406)
.+ ..+...+ .-.+|+...+..+|+++ ..|.+|+++ ..++
T Consensus 480 ~l-------~~~~~tv-i~vsHd~~~~~~~~d~i-~~l~~g~i~~~~g~ 519 (530)
T PRK15064 480 AL-------EKYEGTL-IFVSHDREFVSSLATRI-IEITPDGVVDFSGT 519 (530)
T ss_pred HH-------HHCCCEE-EEEeCCHHHHHHhCCEE-EEEECCeEEEcCCC
Confidence 22 1111111 11239999999999999 788888876 4444
No 281
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.9e-11 Score=118.73 Aligned_cols=169 Identities=15% Similarity=0.178 Sum_probs=97.8
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccC--CceeEEEcCCcchhh-------hh--hhccCCCC
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--PNEARVNIPDERFEW-------LC--QLFKPKSA 85 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~--p~~G~i~v~g~~~~~-------l~--~~~~p~~~ 85 (406)
....+.+|++++|+|+||||||||+++|+|.... .. |++|.|.++|.++.. +. ..|.+|..
T Consensus 58 vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~--------~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 58 VNADILSKYVTAIIGPSGCGKSTFLRAINRMNDL--------IPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc--------CCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence 3456889999999999999999999999997200 01 489999998876531 11 23555542
Q ss_pred cCceeEEEeeccccccc---cCCCCCcchhhhhHHhh---------------------hchhhhhccc-CCCceEeecCC
Q 015465 86 VPAFLEIHDIAGLVRGA---HEGQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~---~~~~~l~~~~l~~l~~a---------------------d~ll~vvda~-~~~~il~ld~~ 140 (406)
.....++.|...+.... .........+...++.. .-.+.+++++ .+|+++++|
T Consensus 130 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD-- 207 (286)
T PRK14275 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLD-- 207 (286)
T ss_pred CCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 11111333332221100 00000000000000000 0014455665 799999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|....+.....+ ..+.. .+ .-.+|+...+..+|+++ .+|.+|++...++
T Consensus 208 -EPt~gLD~~~~~~l~~~L-------~~~~~~~tv-IivsH~~~~~~~~~d~i-~~L~~G~i~~~g~ 264 (286)
T PRK14275 208 -EPTSALDPKATAKIEDLI-------QELRGSYTI-MIVTHNMQQASRVSDYT-MFFYEGVLVEHAP 264 (286)
T ss_pred -CCCccCCHHHHHHHHHHH-------HHHhcCCeE-EEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999998864433322 11111 11 11239999999999999 8889998876553
No 282
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.6e-11 Score=116.71 Aligned_cols=174 Identities=18% Similarity=0.242 Sum_probs=98.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|.... .| ..|++|.|.++|.++.. .. ..|.++...
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDL---IP---SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---cC---CCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 44456789999999999999999999999997210 00 01368999999876531 11 135555421
Q ss_pred CceeEEEeeccccccccC---CCCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeecCCC
Q 015465 87 PAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~---~~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld~~~ 141 (406)
....++.+...+...... .........+.+..++ -.+.+++++ .+|+++++|
T Consensus 95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD--- 171 (250)
T PRK14240 95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMD--- 171 (250)
T ss_pred cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 111333333322110000 0000000000011110 014455665 799999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|.........-+.. +.. ...+ .-.+|+...+..+|+++ .+|.+|++...+.
T Consensus 172 EP~~~LD~~~~~~l~~~l~~----~~~-~~ti-ii~sH~~~~~~~~~d~v-~~l~~G~i~~~~~ 228 (250)
T PRK14240 172 EPTSALDPISTLKIEELIQE----LKK-DYTI-VIVTHNMQQASRISDKT-AFFLNGEIVEFGD 228 (250)
T ss_pred CCCccCCHHHHHHHHHHHHH----Hhc-CCeE-EEEEeCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 99999999986544332211 111 1111 11239999999999998 8889998876543
No 283
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.18 E-value=9.7e-12 Score=123.13 Aligned_cols=172 Identities=15% Similarity=0.249 Sum_probs=99.5
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCc---eeEEEcCCcchhhhh-----------hhc
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWLC-----------QLF 80 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~---~G~i~v~g~~~~~l~-----------~~~ 80 (406)
.+....+.+|+++||+|+||||||||+++|+|. ..|+ +|.|.++|.++..+. ..|
T Consensus 33 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl-----------~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~ 101 (330)
T PRK09473 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGL-----------LAANGRIGGSATFNGREILNLPEKELNKLRAEQISM 101 (330)
T ss_pred eeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEE
Confidence 344566889999999999999999999999999 4554 899999997653211 124
Q ss_pred cCCCC---cCceeEEEeec----cccccccCCC--CCcchhhhhHHhhh-----------------chhhhhccc-CCCc
Q 015465 81 KPKSA---VPAFLEIHDIA----GLVRGAHEGQ--GLGNSFLSHIRAVD-----------------GIFHVLRAF-EDPD 133 (406)
Q Consensus 81 ~p~~~---~~~~i~lvD~~----gl~~~~~~~~--~l~~~~l~~l~~ad-----------------~ll~vvda~-~~~~ 133 (406)
.+|.. ....+++.+.. ....+..... .....+++.++..+ --+.+++|. .+|+
T Consensus 102 v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~ 181 (330)
T PRK09473 102 IFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPK 181 (330)
T ss_pred EEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 44442 12222221111 0000000000 00000111111000 013345555 6999
Q ss_pred eEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 134 il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++++| ||++.+|......++..+..+.+ .....+ .-.+|++..+..+||++ .+|..|+++..|+
T Consensus 182 llilD---EPts~LD~~~~~~i~~lL~~l~~---~~g~ti-l~iTHdl~~~~~~~Dri-~vm~~G~ive~g~ 245 (330)
T PRK09473 182 LLIAD---EPTTALDVTVQAQIMTLLNELKR---EFNTAI-IMITHDLGVVAGICDKV-LVMYAGRTMEYGN 245 (330)
T ss_pred EEEEe---CCCccCCHHHHHHHHHHHHHHHH---HcCCEE-EEEECCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999 99999999986544333222111 111111 11239999999999999 8999999887664
No 284
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.18 E-value=1.9e-11 Score=116.48 Aligned_cols=162 Identities=16% Similarity=0.213 Sum_probs=89.8
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCC-cCcee--EEE
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFL--EIH 93 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~-~~~~i--~lv 93 (406)
....+.+|++++|+|+||||||||+++|+|. ..|++|.|.+++.. ...|.||.. ....+ ++.
T Consensus 23 vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~~~~----~i~~v~q~~~~~~~l~~~~~ 87 (251)
T PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGL-----------VAPDEGVIKRNGKL----RIGYVPQKLYLDTTLPLTVN 87 (251)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCcc----CEEEeccccccccccChhHH
Confidence 3456789999999999999999999999999 67999999887632 123444431 11111 111
Q ss_pred eeccccccccCCCCCcchhhhhHHh--------------hhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhh
Q 015465 94 DIAGLVRGAHEGQGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKD 158 (406)
Q Consensus 94 D~~gl~~~~~~~~~l~~~~l~~l~~--------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~d 158 (406)
+...+...... .....+++.+.. ....+.++++. .+|+++++| ||++.+|....+.....
T Consensus 88 ~~~~~~~~~~~--~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~l~~~ 162 (251)
T PRK09544 88 RFLRLRPGTKK--EDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLD---EPTQGVDVNGQVALYDL 162 (251)
T ss_pred HHHhccccccH--HHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHHHHH
Confidence 11100000000 000000000000 00113445555 699999999 99999999886443322
Q ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 159 IEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 159 i~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
+..+ .......+ .-.+|+...+..+|+++ .+|+ ++++..+
T Consensus 163 L~~~---~~~~g~ti-iivsH~~~~i~~~~d~i-~~l~-~~i~~~g 202 (251)
T PRK09544 163 IDQL---RRELDCAV-LMVSHDLHLVMAKTDEV-LCLN-HHICCSG 202 (251)
T ss_pred HHHH---HHhcCCEE-EEEecCHHHHHHhCCEE-EEEC-CceEeeC
Confidence 2111 11001111 11239999999999998 5665 4555444
No 285
>PRK13409 putative ATPase RIL; Provisional
Probab=99.18 E-value=9.8e-12 Score=131.98 Aligned_cols=165 Identities=18% Similarity=0.241 Sum_probs=94.6
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCC-cCceeEEEeecc
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIAG 97 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~-~~~~i~lvD~~g 97 (406)
+.+.+|+++||+|+||||||||+++|+|. ..|++|.|.++ . ...|.||.. ....+++.|...
T Consensus 360 ~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl-----------~~p~~G~I~~~-~-----~i~y~~Q~~~~~~~~tv~e~l~ 422 (590)
T PRK13409 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGV-----------LKPDEGEVDPE-L-----KISYKPQYIKPDYDGTVEDLLR 422 (590)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEEe-e-----eEEEecccccCCCCCcHHHHHH
Confidence 34689999999999999999999999999 77899998764 1 233455542 222334444332
Q ss_pred ccccccCCCCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHH
Q 015465 98 LVRGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFM 162 (406)
Q Consensus 98 l~~~~~~~~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l 162 (406)
+.............+++.+...+ -.+.+++++ .+|+++++| ||++.+|+...+.....+..+
T Consensus 423 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLD---EPt~~LD~~~~~~l~~~l~~l 499 (590)
T PRK13409 423 SITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLD---EPSAHLDVEQRLAVAKAIRRI 499 (590)
T ss_pred HHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHHHHHHHHH
Confidence 21100000000011111111100 013455555 699999999 999999999864443322111
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCCChh
Q 015465 163 ERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAA 209 (406)
Q Consensus 163 ~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t~~ 209 (406)
.+ .....+ .-.+|+...+..+||++ .+|+ |++...|..+..
T Consensus 500 ~~---~~g~tv-iivsHD~~~~~~~aDrv-ivl~-~~~~~~g~~~~~ 540 (590)
T PRK13409 500 AE---EREATA-LVVDHDIYMIDYISDRL-MVFE-GEPGKHGHASGP 540 (590)
T ss_pred HH---hCCCEE-EEEeCCHHHHHHhCCEE-EEEc-CcceeeeecCCc
Confidence 10 000111 11139999999999998 6665 566655554433
No 286
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=9.5e-12 Score=118.33 Aligned_cols=171 Identities=15% Similarity=0.154 Sum_probs=98.1
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccC--CceeEEEcCCcchhhh---------hhhccCCCC
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--PNEARVNIPDERFEWL---------CQLFKPKSA 85 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~--p~~G~i~v~g~~~~~l---------~~~~~p~~~ 85 (406)
....+.+|+++||+|+||||||||+++|+|.... .. |++|.|.++|.++... ...|.||..
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~--------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 93 (250)
T PRK14245 22 ISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDL--------IPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRP 93 (250)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcc--------cCCCCCceEEEECCEecccccccHHHHhhheEEEecCC
Confidence 3456889999999999999999999999996200 12 3589999998765321 124555542
Q ss_pred cCceeEEEeecccccccc---CCCCC---cchhhhhHHhh------------------hchhhhhccc-CCCceEeecCC
Q 015465 86 VPAFLEIHDIAGLVRGAH---EGQGL---GNSFLSHIRAV------------------DGIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~---~~~~l---~~~~l~~l~~a------------------d~ll~vvda~-~~~~il~ld~~ 140 (406)
.....++.|...+..... ..... ....++.+... .-.+.+++++ .+|+++++|
T Consensus 94 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD-- 171 (250)
T PRK14245 94 NPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMD-- 171 (250)
T ss_pred ccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 111123333322110000 00000 00111111000 0013455555 799999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|....+.....+..+ .. ...+.. .+|+...+.++||++ .+|++|+++..++
T Consensus 172 -EPt~~LD~~~~~~l~~~l~~~----~~-~~tiii-vtH~~~~~~~~~d~v-~~l~~G~~~~~~~ 228 (250)
T PRK14245 172 -EPASALDPISTAKVEELIHEL----KK-DYTIVI-VTHNMQQAARVSDKT-AFFYMGEMVEYDD 228 (250)
T ss_pred -CCCccCCHHHHHHHHHHHHHH----hc-CCeEEE-EeCCHHHHHhhCCEE-EEEECCEEEEECC
Confidence 999999999865443332211 11 111111 239999999999999 8889998876653
No 287
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1.2e-11 Score=117.53 Aligned_cols=175 Identities=17% Similarity=0.196 Sum_probs=98.9
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh------hh--hhhccCCCCc
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE------WL--CQLFKPKSAV 86 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~------~l--~~~~~p~~~~ 86 (406)
.+....+.+|++++|+|+||||||||+++|+|...+.. -.|++|.+.++|.++. .. ...|.++...
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 93 (249)
T PRK14253 20 KSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIE------GVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN 93 (249)
T ss_pred ecceEEecCCCEEEEECCCCCCHHHHHHHHHhhccccc------CCCCceEEEECCEEcccccchHHHHhheeEEecCCC
Confidence 34445688999999999999999999999999821000 0146899999886542 11 1235555522
Q ss_pred CceeEEEeeccccccccC---CCCCcchhhhhHHhh---------------------hchhhhhccc-CCCceEeecCCC
Q 015465 87 PAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~---~~~l~~~~l~~l~~a---------------------d~ll~vvda~-~~~~il~ld~~~ 141 (406)
....++.|...+...... ...........++.+ .-.+.++++. .+|+++++|
T Consensus 94 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD--- 170 (249)
T PRK14253 94 PFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMD--- 170 (249)
T ss_pred cCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe---
Confidence 111333333222110000 000000000000000 0114455665 789999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|.........-+..+ .+ ...+.. .+|+...+..+|+++ .+|.+|++...++
T Consensus 171 EP~~~LD~~~~~~l~~~l~~~----~~-~~tii~-~sh~~~~~~~~~d~i-~~l~~G~i~~~g~ 227 (249)
T PRK14253 171 EPTSALDPIATHKIEELMEEL----KK-NYTIVI-VTHSMQQARRISDRT-AFFLMGELVEHDD 227 (249)
T ss_pred CCCccCCHHHHHHHHHHHHHH----hc-CCeEEE-EecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999998864433322211 10 011111 239999999999999 8889998876543
No 288
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.18 E-value=1.6e-11 Score=123.23 Aligned_cols=94 Identities=26% Similarity=0.285 Sum_probs=79.3
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccc
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl 98 (406)
.++.|.+++|+|+||+|||||||+|++...++ ++.|+||++.-.+.+.++|.+ +.++||+|+
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p-----------------v~l~DTAGi 275 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP-----------------VRLVDTAGI 275 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE-----------------EEEEecCCc
Confidence 35789999999999999999999999998876 999999999999999999975 899999999
Q ss_pred cccccCCCCC-cchhhhhHHhhhchhhhhcccC
Q 015465 99 VRGAHEGQGL-GNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 99 ~~~~~~~~~l-~~~~l~~l~~ad~ll~vvda~~ 130 (406)
......-+.. .++..+.++.||.+++|+|+++
T Consensus 276 Ret~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~ 308 (454)
T COG0486 276 RETDDVVERIGIERAKKAIEEADLVLFVLDASQ 308 (454)
T ss_pred ccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCC
Confidence 8543322222 2345678899999999999975
No 289
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.18 E-value=7.1e-12 Score=134.53 Aligned_cols=164 Identities=15% Similarity=0.249 Sum_probs=95.3
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCC--CcCceeEEEe
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS--AVPAFLEIHD 94 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~--~~~~~i~lvD 94 (406)
....+.+|+++||+|+||||||||+++|+|. ..|++|.|.+ |.++ ...|.+|. ..+..+++.|
T Consensus 338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-----------~~p~~G~i~~-~~~~---~i~y~~q~~~~l~~~~tv~e 402 (635)
T PRK11147 338 FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ-----------LQADSGRIHC-GTKL---EVAYFDQHRAELDPEKTVMD 402 (635)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEE-CCCc---EEEEEeCcccccCCCCCHHH
Confidence 3456789999999999999999999999999 6789999988 4321 12344432 1222233333
Q ss_pred ecccccccc--CC-CCCcchhhhhHH---------------hhhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHh
Q 015465 95 IAGLVRGAH--EG-QGLGNSFLSHIR---------------AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELR 155 (406)
Q Consensus 95 ~~gl~~~~~--~~-~~l~~~~l~~l~---------------~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~ 155 (406)
...+..... .. ......++..+. .-...+.+++++ .+|+++++| ||++++|+...+..
T Consensus 403 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLD---EPt~~LD~~~~~~l 479 (635)
T PRK11147 403 NLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILD---EPTNDLDVETLELL 479 (635)
T ss_pred HHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHH
Confidence 222110000 00 000000000000 000113455555 689999999 99999999985432
Q ss_pred hhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhh-CCCccc-cCCCC
Q 015465 156 LKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ-DGKDVR-LGDWK 207 (406)
Q Consensus 156 ~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~-~g~~~~-~~~~t 207 (406)
.+.+..+...+ .-.+|+...+..+|+++ ..+. +|++.. .|+++
T Consensus 480 -------~~~l~~~~~tv-i~vSHd~~~~~~~~d~i-~~l~~~g~i~~~~g~y~ 524 (635)
T PRK11147 480 -------EELLDSYQGTV-LLVSHDRQFVDNTVTEC-WIFEGNGKIGRYVGGYH 524 (635)
T ss_pred -------HHHHHhCCCeE-EEEECCHHHHHHhcCEE-EEEeCCCeEEEccCCHH
Confidence 22222221111 11239999999999999 6776 788754 46665
No 290
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1.1e-11 Score=118.93 Aligned_cols=174 Identities=14% Similarity=0.200 Sum_probs=98.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|...+..+ .|++|.|.++|.++.. +. ..|.+|...
T Consensus 26 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~------~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 26 DSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKG------FRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccC------CCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 44556889999999999999999999999999311000 0368999999876521 11 135555432
Q ss_pred CceeEEEeeccccccccC-CCCCcchhhhhHHhh---------------------hchhhhhccc-CCCceEeecCCCCC
Q 015465 87 PAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~-~~~l~~~~l~~l~~a---------------------d~ll~vvda~-~~~~il~ld~~~dP 143 (406)
...+++.|...+...... ...........++.+ .-.+.+++|+ .+|+++++| ||
T Consensus 100 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP 176 (261)
T PRK14263 100 PFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD---EP 176 (261)
T ss_pred cccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CC
Confidence 222444443322110000 000000000111110 0014455666 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhh--------CCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ--------DGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~--------~g~~~~~~~ 205 (406)
++++|....+.....+..+ .+ ...+ .-.+|+...+..+||++ .+|+ +|+++..++
T Consensus 177 tsgLD~~~~~~l~~~l~~~----~~-~~ti-i~isH~~~~i~~~~d~v-~~l~~~~~~~~~~G~i~~~g~ 239 (261)
T PRK14263 177 CSALDPIATRRVEELMVEL----KK-DYTI-ALVTHNMQQAIRVADTT-AFFSVDISQGTRTGYLVEMGP 239 (261)
T ss_pred CccCCHHHHHHHHHHHHHH----hc-CCeE-EEEeCCHHHHHHhCCEE-EEEecccccccCCceEEEeCC
Confidence 9999998865443322211 10 1111 11239999999999998 7774 687776543
No 291
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1.3e-11 Score=122.31 Aligned_cols=176 Identities=12% Similarity=0.154 Sum_probs=99.9
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----------hhccCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----------QLFKPK 83 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----------~~~~p~ 83 (406)
......+.+|+++||+|+||||||||+++|+|...+ ...|++|.|.++|.++..+. ..|.+|
T Consensus 24 ~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~-------~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q 96 (330)
T PRK15093 24 DRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKD-------NWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCC-------CCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 344557889999999999999999999999999310 01367899999987653211 124454
Q ss_pred CC---cCceeEEEeecccc------ccc--cC---CCCCcchhhhhHHhhh-----------------chhhhhccc-CC
Q 015465 84 SA---VPAFLEIHDIAGLV------RGA--HE---GQGLGNSFLSHIRAVD-----------------GIFHVLRAF-ED 131 (406)
Q Consensus 84 ~~---~~~~i~lvD~~gl~------~~~--~~---~~~l~~~~l~~l~~ad-----------------~ll~vvda~-~~ 131 (406)
.. ....+++.+..... .+. .. .......+++.+...+ --+.+++|. .+
T Consensus 97 ~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~ 176 (330)
T PRK15093 97 EPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred CcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCC
Confidence 42 11122222211100 000 00 0000001111111100 013455665 79
Q ss_pred CceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 132 ~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|+++++| ||++.+|......++..+..+. +.....+ .-.+|++..+..+||++ .+|.+|+++..|+
T Consensus 177 P~llilD---EPts~LD~~~~~~i~~lL~~l~---~~~g~ti-i~itHdl~~v~~~~dri-~vm~~G~ive~g~ 242 (330)
T PRK15093 177 PRLLIAD---EPTNAMEPTTQAQIFRLLTRLN---QNNNTTI-LLISHDLQMLSQWADKI-NVLYCGQTVETAP 242 (330)
T ss_pred CCEEEEe---CCCCcCCHHHHHHHHHHHHHHH---HhcCCEE-EEEECCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999999 9999999987643333221111 1001111 11139999999999999 8999999887654
No 292
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.4e-11 Score=117.70 Aligned_cols=174 Identities=17% Similarity=0.189 Sum_probs=97.2
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCC-C
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKS-A 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~-~ 85 (406)
+....+.+|++++|+|+||||||||+++|+|...+ .| ..|++|.|.++|.++.. +. ..|.++. .
T Consensus 22 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~---~~---~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEV---IP---GARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc---cc---CCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 44566889999999999999999999999998210 00 01479999998876421 11 1344443 2
Q ss_pred cCceeEEEeeccccccccC---CC---CCcchhhhhHHh-------hh-----------chhhhhccc-CCCceEeecCC
Q 015465 86 VPAFLEIHDIAGLVRGAHE---GQ---GLGNSFLSHIRA-------VD-----------GIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~---~~---~l~~~~l~~l~~-------ad-----------~ll~vvda~-~~~~il~ld~~ 140 (406)
.....++.|...+...... .. .....+++.+.. .+ -.+.+++++ .+|+++++|
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD-- 173 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD-- 173 (258)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc--
Confidence 2222333443322110000 00 000011111100 00 114455665 789999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhh------CCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ------DGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~------~g~~~~~~~ 205 (406)
||++.+|....+....-+..+ .. ...+ .-.+|+...+..+|+++ .+|. +|+++..++
T Consensus 174 -EPt~~LD~~~~~~l~~~l~~~----~~-~~tv-iivsH~~~~~~~~~d~i-~~l~~~~~~~~g~i~~~~~ 236 (258)
T PRK14241 174 -EPCSALDPISTLAIEDLINEL----KQ-DYTI-VIVTHNMQQAARVSDQT-AFFNLEATGKPGRLVEIDD 236 (258)
T ss_pred -CCCccCCHHHHHHHHHHHHHH----hc-CCEE-EEEecCHHHHHHhCCEE-EEEecccCCCCceEEecCC
Confidence 999999998864443322211 00 0111 11239999999999998 6665 677765543
No 293
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.6e-11 Score=118.61 Aligned_cols=172 Identities=16% Similarity=0.185 Sum_probs=99.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------hhhccCCCCcC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKSAVP 87 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~p~~~~~ 87 (406)
+....+.+|++++|+|+||||||||+++|+|...+.. -.|++|.|.++|.++... ...|.+|....
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~------~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l 112 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVS------GYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCC------CCCCceEEEECCEEccccchhHHHhhheEEeccCCcc
Confidence 3445678999999999999999999999999831000 014789999988664311 12355655221
Q ss_pred ceeEEEeecccccccc---CCCCCc---chhhhhHHh------------------hhchhhhhccc-CCCceEeecCCCC
Q 015465 88 AFLEIHDIAGLVRGAH---EGQGLG---NSFLSHIRA------------------VDGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~---~~~~l~---~~~l~~l~~------------------ad~ll~vvda~-~~~~il~ld~~~d 142 (406)
...++.+...+..... ...... ...+..+.. -.-.+.+++++ .+|+++++| |
T Consensus 113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLD---E 189 (276)
T PRK14271 113 FPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLD---E 189 (276)
T ss_pred CCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---C
Confidence 1133443322211000 000000 000000000 00114456666 789999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++.+|....+.....+ .++.+ .+ .-.+|+...+..+|+++ ..|.+|++...++
T Consensus 190 Pt~~LD~~~~~~l~~~L-------~~~~~~~ti-iivsH~~~~~~~~~dri-~~l~~G~i~~~g~ 245 (276)
T PRK14271 190 PTSALDPTTTEKIEEFI-------RSLADRLTV-IIVTHNLAQAARISDRA-ALFFDGRLVEEGP 245 (276)
T ss_pred CcccCCHHHHHHHHHHH-------HHHhcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999998864433322 22211 11 11239999999999999 8888898876544
No 294
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=2.2e-11 Score=119.43 Aligned_cols=174 Identities=17% Similarity=0.226 Sum_probs=97.6
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------h--hhhccCCCCcC
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------L--CQLFKPKSAVP 87 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l--~~~~~p~~~~~ 87 (406)
....+.+|++++|+|+||||||||+++|+|...+.. -.|++|.|.++|.++.. + ...|.+|....
T Consensus 64 is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~------~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 137 (305)
T PRK14264 64 VSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIK------AARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNP 137 (305)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC------CCCCceEEEECCEEcccccccHHHHhhceEEEccCCcc
Confidence 345678999999999999999999999999821000 01689999998865431 1 12355554211
Q ss_pred ceeEEEeeccccccccC-----------CC---CC-cchhhhhHHhhh---------------------chhhhhccc-C
Q 015465 88 AFLEIHDIAGLVRGAHE-----------GQ---GL-GNSFLSHIRAVD---------------------GIFHVLRAF-E 130 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~-----------~~---~l-~~~~l~~l~~ad---------------------~ll~vvda~-~ 130 (406)
...++.|...+...... +. .. .......++..+ -.+.++++. .
T Consensus 138 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~ 217 (305)
T PRK14264 138 FPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV 217 (305)
T ss_pred ccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhc
Confidence 11233332221100000 00 00 000001111110 114455555 7
Q ss_pred CCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 131 DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 131 ~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+|+++++| ||++++|..........+..+. + ...+ .-.+|+...+..+|+++..+|++|+++..++
T Consensus 218 ~p~lLLLD---EPtsgLD~~~~~~l~~~L~~~~----~-~~ti-iivtH~~~~i~~~~d~i~~~l~~G~i~~~g~ 283 (305)
T PRK14264 218 DPEVILMD---EPASALDPIATSKIEDLIEELA----E-EYTV-VVVTHNMQQAARISDQTAVFLTGGELVEYDD 283 (305)
T ss_pred CCCEEEEe---CCcccCCHHHHHHHHHHHHHHh----c-CCEE-EEEEcCHHHHHHhcCEEEEEecCCEEEEeCC
Confidence 99999999 9999999988654433222111 1 0111 1123999999999998635678898876553
No 295
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.3e-11 Score=117.49 Aligned_cols=174 Identities=14% Similarity=0.149 Sum_probs=97.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------h--hhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~--~~~~p~~~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|.... .| ..+++|.|.++|.++... . ..|.+|...
T Consensus 24 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 24 DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL---IP---GCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred eeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC---CC---CCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 33456889999999999999999999999998210 00 012589999988765321 1 134555421
Q ss_pred CceeEEEeeccccccccC--CC-CCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeecCCC
Q 015465 87 PAFLEIHDIAGLVRGAHE--GQ-GLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~--~~-~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld~~~ 141 (406)
....++.|...+...... .. .......+.++..+ -.+.++++. .+|+++++|
T Consensus 98 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD--- 174 (253)
T PRK14261 98 PFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMD--- 174 (253)
T ss_pred cCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 111133333222111000 00 00000000011000 014455565 789999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|....+.....+..+ .. ...+ .-.+|+...+..+|+++ .+|++|++...++
T Consensus 175 EP~~gLD~~~~~~l~~~l~~~----~~-~~tv-ii~sh~~~~~~~~~d~v-~~l~~G~i~~~g~ 231 (253)
T PRK14261 175 EPCSALDPIATAKIEDLIEDL----KK-EYTV-IIVTHNMQQAARVSDYT-GFMYLGKLIEFDK 231 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHH----hh-CceE-EEEEcCHHHHHhhCCEE-EEEECCEEEEcCC
Confidence 999999999865443322211 10 0111 11239999999999999 7889998876544
No 296
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.5e-11 Score=117.98 Aligned_cols=173 Identities=14% Similarity=0.152 Sum_probs=95.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------h--hhhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------L--CQLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l--~~~~~p~~~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|..... | ..|++|.|.++|.++.. + ...|.+|...
T Consensus 28 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 28 NVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLI---P---GFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccc---C---CCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 445668899999999999999999999999982100 0 01478999998865421 1 1134455421
Q ss_pred CceeEEEeeccccccccC-CCCCcchhhhhHHhh---------------------hchhhhhccc-CCCceEeecCCCCC
Q 015465 87 PAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~-~~~l~~~~l~~l~~a---------------------d~ll~vvda~-~~~~il~ld~~~dP 143 (406)
....++.+...+...... ...........++.+ .-.+.+++++ .+|+++++| ||
T Consensus 102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EP 178 (264)
T PRK14243 102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMD---EP 178 (264)
T ss_pred cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CC
Confidence 111122222221110000 000000000000000 0114455665 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhh---------CCCccccC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ---------DGKDVRLG 204 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~---------~g~~~~~~ 204 (406)
++++|....+....-+..+ .. ...+.. .+|+...+..+|+++ .+|+ +|+++..+
T Consensus 179 t~~LD~~~~~~l~~~L~~~----~~-~~tvi~-vtH~~~~~~~~~d~v-~~l~~~~~~~~~~~g~i~~~~ 241 (264)
T PRK14243 179 CSALDPISTLRIEELMHEL----KE-QYTIII-VTHNMQQAARVSDMT-AFFNVELTEGGGRYGYLVEFD 241 (264)
T ss_pred CccCCHHHHHHHHHHHHHH----hc-CCEEEE-EecCHHHHHHhCCEE-EEEecccccccccCceEEEeC
Confidence 9999998865443322211 10 011111 239999999999998 7776 67776554
No 297
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.17 E-value=1.1e-11 Score=132.04 Aligned_cols=160 Identities=17% Similarity=0.176 Sum_probs=100.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+..-++++|+++||+|++|||||||+++|+|. .+|++|.|.++|.++..+. ..|.||...-.
T Consensus 359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl-----------~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF 427 (592)
T PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLASLLMGY-----------YPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVL 427 (592)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccc
Confidence 34456889999999999999999999999999 7899999999998775432 14667663322
Q ss_pred eeEEEeeccccccccCC------------------------------CCCcchhhhhHHhhhchhhhhccc-CCCceEee
Q 015465 89 FLEIHDIAGLVRGAHEG------------------------------QGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHV 137 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~------------------------------~~l~~~~l~~l~~ad~ll~vvda~-~~~~il~l 137 (406)
.-++.|...+....... ..+..--.++ +.++||. .+|+++++
T Consensus 428 ~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQR-------ialARaLl~~~~illl 500 (592)
T PRK10790 428 ADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQL-------LALARVLVQTPQILIL 500 (592)
T ss_pred cchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH-------HHHHHHHHhCCCEEEE
Confidence 22333333322210000 0000000122 3455555 69999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 138 d~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
| ||++.+|..+++.+...+ ..+. +.+ .-.+|....+. .||+| -.|++|++...|+.
T Consensus 501 D---Epts~LD~~t~~~i~~~l-------~~~~~~~tv-IivtHr~~~l~-~~D~i-i~l~~G~i~~~G~~ 558 (592)
T PRK10790 501 D---EATANIDSGTEQAIQQAL-------AAVREHTTL-VVIAHRLSTIV-EADTI-LVLHRGQAVEQGTH 558 (592)
T ss_pred e---CCcccCCHHHHHHHHHHH-------HHHhCCCEE-EEEecchHHHH-hCCEE-EEEECCEEEEEcCH
Confidence 9 999999998864433222 1111 111 11238875544 58988 77899988866653
No 298
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.9e-11 Score=118.67 Aligned_cols=174 Identities=14% Similarity=0.187 Sum_probs=96.5
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------h--hhccCCCCcC
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QLFKPKSAVP 87 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~--~~~~p~~~~~ 87 (406)
....+.+|++++|+|+||||||||+++|+|.... .+..|++|.|.++|.++... . ..|.+|....
T Consensus 58 is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~------~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (285)
T PRK14254 58 VSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDL------IDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131 (285)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc------ccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 3346789999999999999999999999998310 00126899999988765211 1 1344544211
Q ss_pred ceeEEEeeccccccccC-CCCCcchhhhhHHhh---------------------hchhhhhccc-CCCceEeecCCCCCC
Q 015465 88 AFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~-~~~l~~~~l~~l~~a---------------------d~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
...++.|...+...... ......+....++.. .-.+.+++++ .+|+++++| ||+
T Consensus 132 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLD---EPt 208 (285)
T PRK14254 132 FPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMD---EPA 208 (285)
T ss_pred CcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCC
Confidence 11122222211100000 000000000001110 0114455555 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+.+|....+.....+..+. +. ..+ .-.+|+...+..+|+++..+|++|+++..+.
T Consensus 209 s~LD~~~~~~l~~~L~~~~---~~--~ti-ii~tH~~~~i~~~~dri~v~l~~G~i~~~g~ 263 (285)
T PRK14254 209 SALDPVATSKIEDLIEELA---EE--YTV-VIVTHNMQQAARISDKTAVFLTGGELVEFDD 263 (285)
T ss_pred CCCCHHHHHHHHHHHHHHh---cC--CEE-EEEeCCHHHHHhhcCEEEEEeeCCEEEEeCC
Confidence 9999988654433322211 00 111 1123999999999998634568898775543
No 299
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.17 E-value=2.1e-11 Score=112.30 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=39.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g 70 (406)
+....+++|++++|+|+||||||||+++|+|. ..|++|.|.++|
T Consensus 23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~-----------~~~~~G~i~~~g 66 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGE-----------LEKLSGSVSVPG 66 (204)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCc-----------CCCCCCeEEEcC
Confidence 44566889999999999999999999999999 678999999887
No 300
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.17 E-value=9.8e-12 Score=145.27 Aligned_cols=168 Identities=17% Similarity=0.173 Sum_probs=104.4
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----h--hhccCCC-CcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPKS-AVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~--~~~~p~~-~~~~~ 89 (406)
..-.+.+|++++|+|+||||||||+++|+|. ..|++|.+.++|.++... . ..|.||. .....
T Consensus 949 lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL-----------l~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~ 1017 (2272)
T TIGR01257 949 LNITFYENQITAFLGHNGAGKTTTLSILTGL-----------LPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHH 1017 (2272)
T ss_pred eEEEEcCCcEEEEECCCCChHHHHHHHHhcC-----------CCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCC
Confidence 3445778999999999999999999999999 789999999999765321 1 2355665 23334
Q ss_pred eEEEeeccccc---cccCC--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVR---GAHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~---~~~~~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+.. +.... ......+++.+...+ --+.+++|+ .+|+++++| ||++++|+
T Consensus 1018 LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLD---EPTSGLDp 1094 (2272)
T TIGR01257 1018 LTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD---EPTSGVDP 1094 (2272)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCCcCCCH
Confidence 45555433321 10000 000011111111100 014456666 799999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.........+..+ .+ +..+.. .+|+++++..+||++ .+|.+|++...|+
T Consensus 1095 ~sr~~l~~lL~~l----~~-g~TIIl-tTHdmdea~~laDrI-~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1095 YSRRSIWDLLLKY----RS-GRTIIM-STHHMDEADLLGDRI-AIISQGRLYCSGT 1143 (2272)
T ss_pred HHHHHHHHHHHHH----hC-CCEEEE-EECCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 9864443322111 10 111111 239999999999999 8999999876654
No 301
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.9e-11 Score=117.31 Aligned_cols=173 Identities=16% Similarity=0.224 Sum_probs=97.1
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh---------hhh--hhccCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE---------WLC--QLFKPK 83 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~---------~l~--~~~~p~ 83 (406)
.+....+.+|++++|+|+||||||||+++|+|...+ .|+ .|++|.|.++|.++. .+. ..|.++
T Consensus 33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~---~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 106 (265)
T PRK14252 33 KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL---YPG---NHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQ 106 (265)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC---CCC---CCcccEEEEcCccccccccccCHHHHhccEEEEcc
Confidence 344456889999999999999999999999998210 010 037899998775432 111 135555
Q ss_pred CCcCceeEEEeeccccc---cccCCCCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeec
Q 015465 84 SAVPAFLEIHDIAGLVR---GAHEGQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVD 138 (406)
Q Consensus 84 ~~~~~~i~lvD~~gl~~---~~~~~~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld 138 (406)
.......++.|...+.. +........+.....+..+. -.+.+++++ .+|+++++|
T Consensus 107 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 186 (265)
T PRK14252 107 KPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFD 186 (265)
T ss_pred CCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 42111113333222110 00000000000001111110 014455665 799999999
Q ss_pred CCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 139 ~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|....+....-+ .++.. .+ .-.+|+.+.+..+|+++ .+|.+|++...++
T Consensus 187 ---EPt~gLD~~~~~~l~~~l-------~~l~~~~ti-iivth~~~~~~~~~d~i-~~l~~G~i~~~g~ 243 (265)
T PRK14252 187 ---EPTSALDPIATASIEELI-------SDLKNKVTI-LIVTHNMQQAARVSDYT-AYMYMGELIEFGA 243 (265)
T ss_pred ---CCCccCCHHHHHHHHHHH-------HHHHhCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999998754332222 21111 11 11239999999999999 8889898876543
No 302
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.17 E-value=1.6e-11 Score=133.43 Aligned_cols=165 Identities=15% Similarity=0.179 Sum_probs=99.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+..-++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. ..|.||+....
T Consensus 499 ~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF 567 (711)
T TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNL-----------YQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLF 567 (711)
T ss_pred CceEEEcCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcccc
Confidence 33456789999999999999999999999999 7899999999998875432 24667664333
Q ss_pred eeEEEeeccccccccCCCCCc--------chhhhhH----------------Hhhhchhhhhccc-CCCceEeecCCCCC
Q 015465 89 FLEIHDIAGLVRGAHEGQGLG--------NSFLSHI----------------RAVDGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~--------~~~l~~l----------------~~ad~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.-++.|+..+.......+.+. ..+.+.+ ..-.--+.++|++ .+|+++++| ||
T Consensus 568 ~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILD---Ep 644 (711)
T TIGR00958 568 SGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILD---EA 644 (711)
T ss_pred ccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---cc
Confidence 334444333321110000000 0000000 0000013455665 699999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHH-HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVE-KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~-~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|...+..+.. ..... +++ .-.+|..+.+ ..+|+| ..|++|+++..|+
T Consensus 645 TSaLD~~te~~i~~--------~~~~~~~Tv-IiItHrl~~i-~~aD~I-ivL~~G~ive~Gt 696 (711)
T TIGR00958 645 TSALDAECEQLLQE--------SRSRASRTV-LLIAHRLSTV-ERADQI-LVLKKGSVVEMGT 696 (711)
T ss_pred ccccCHHHHHHHHH--------hhccCCCeE-EEEeccHHHH-HhCCEE-EEEECCEEEEeeC
Confidence 99999977533221 10000 111 1123888654 458988 7789998876664
No 303
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.17 E-value=2e-11 Score=112.47 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=41.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|+.|.|.++|.++
T Consensus 16 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~ 62 (206)
T TIGR03608 16 DLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL-----------EKFDSGQVYLNGKET 62 (206)
T ss_pred ceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEc
Confidence 44456889999999999999999999999999 679999999998763
No 304
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.16 E-value=6.2e-12 Score=118.66 Aligned_cols=160 Identities=22% Similarity=0.277 Sum_probs=106.5
Q ss_pred cCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEE
Q 015465 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIH 93 (406)
Q Consensus 14 ~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lv 93 (406)
-....-.+.+|+.+||||.+||||||+-++|+|+ .+|++|.|.+.|.++..+.. ........+++
T Consensus 29 vd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L-----------~~pt~G~i~f~g~~i~~~~~----~~~~~~v~elL 93 (268)
T COG4608 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL-----------EEPTSGEILFEGKDITKLSK----EERRERVLELL 93 (268)
T ss_pred ecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC-----------cCCCCceEEEcCcchhhcch----hHHHHHHHHHH
Confidence 3445566889999999999999999999999999 88999999999987544330 00000012344
Q ss_pred eeccccc-----cccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHH
Q 015465 94 DIAGLVR-----GAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIED 168 (406)
Q Consensus 94 D~~gl~~-----~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~ 168 (406)
+.+|+.. .+++ +.....+++..|.++.. +|++++.| ||++.+|+-.+..++..+..+++.+
T Consensus 94 ~~Vgl~~~~~~ryPhe---lSGGQrQRi~IARALal------~P~liV~D---EpvSaLDvSiqaqIlnLL~dlq~~~-- 159 (268)
T COG4608 94 EKVGLPEEFLYRYPHE---LSGGQRQRIGIARALAL------NPKLIVAD---EPVSALDVSVQAQILNLLKDLQEEL-- 159 (268)
T ss_pred HHhCCCHHHhhcCCcc---cCchhhhhHHHHHHHhh------CCcEEEec---CchhhcchhHHHHHHHHHHHHHHHh--
Confidence 4444332 2222 21222366666666666 99999999 9999999876644444333332221
Q ss_pred HHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 169 VEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 169 ~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.-.. .-.+|++..+..++|++ .++..|+++-.++
T Consensus 160 -~lt~-lFIsHDL~vv~~isdri-~VMy~G~iVE~g~ 193 (268)
T COG4608 160 -GLTY-LFISHDLSVVRYISDRI-AVMYLGKIVEIGP 193 (268)
T ss_pred -CCeE-EEEEEEHHhhhhhcccE-EEEecCceeEecC
Confidence 1000 01139999999999999 9999999886654
No 305
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=1e-11 Score=118.92 Aligned_cols=177 Identities=17% Similarity=0.155 Sum_probs=97.1
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~ 85 (406)
.+....+.+|++++|+|+||||||||+++|+|...+.. .-+..|.+.++|.++.. +. ..|.++..
T Consensus 24 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g------~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 97 (261)
T PRK14258 24 EGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELES------EVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKP 97 (261)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCC------CccccceEEECCEEhhccccchHHhhccEEEEecCC
Confidence 34456688999999999999999999999999932100 01247888888865421 11 13444442
Q ss_pred cCceeEEEeecccccccc---CCCCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeecCC
Q 015465 86 VPAFLEIHDIAGLVRGAH---EGQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~---~~~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld~~ 140 (406)
.....++.|...+..... ............++..+ -.+.+++++ .+|+++++|
T Consensus 98 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLD-- 175 (261)
T PRK14258 98 NLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMD-- 175 (261)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 111133333322210000 00000000000011110 013455555 789999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhC-----CCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD-----GKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~-----g~~~~~~~ 205 (406)
||++++|....+.....+..+.+ .....+ .-.+|+...+..+|+++ .+|++ |+++..++
T Consensus 176 -EP~~~LD~~~~~~l~~~l~~l~~---~~~~ti-iivsH~~~~i~~~~d~i-~~l~~~~~~~G~i~~~~~ 239 (261)
T PRK14258 176 -EPCFGLDPIASMKVESLIQSLRL---RSELTM-VIVSHNLHQVSRLSDFT-AFFKGNENRIGQLVEFGL 239 (261)
T ss_pred -CCCccCCHHHHHHHHHHHHHHHH---hCCCEE-EEEECCHHHHHHhcCEE-EEEccCCCcCceEEEeCC
Confidence 99999999886443332211110 001111 11239999999999999 88888 88776543
No 306
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=4.3e-12 Score=136.13 Aligned_cols=162 Identities=15% Similarity=0.182 Sum_probs=94.5
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCC---cCceeEEE
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA---VPAFLEIH 93 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~---~~~~i~lv 93 (406)
....+.+|+++||+||||||||||+++|+|. ..|++|.|.+.+. ....|.+|.. .....++.
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-----------~~p~~G~i~~~~~----~~igy~~Q~~~~~l~~~~~~~ 395 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE-----------LAPVSGEIGLAKG----IKLGYFAQHQLEFLRADESPL 395 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEECCC----EEEEEecCcchhhCCccchHH
Confidence 3346789999999999999999999999999 6789999988532 1123334321 11111111
Q ss_pred eecc-ccccccCCCCCcchhhhhHHh---------------hhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhh
Q 015465 94 DIAG-LVRGAHEGQGLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRL 156 (406)
Q Consensus 94 D~~g-l~~~~~~~~~l~~~~l~~l~~---------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~ 156 (406)
+... +.... .......++..+.. -...+.+++++ .+|+++++| ||++++|+...+...
T Consensus 396 ~~~~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLD---EPt~~LD~~~~~~l~ 470 (638)
T PRK10636 396 QHLARLAPQE--LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLD---EPTNHLDLDMRQALT 470 (638)
T ss_pred HHHHHhCchh--hHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHHH
Confidence 1110 00000 00000001111100 00113455555 689999999 999999999865443
Q ss_pred hhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc-ccCCCC
Q 015465 157 KDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (406)
Q Consensus 157 ~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~-~~~~~t 207 (406)
..+ ..+...+.. .+|+...+..+|+++ .+|.+|++. +.|+++
T Consensus 471 ~~L-------~~~~gtvi~-vSHd~~~~~~~~d~i-~~l~~G~i~~~~g~~~ 513 (638)
T PRK10636 471 EAL-------IDFEGALVV-VSHDRHLLRSTTDDL-YLVHDGKVEPFDGDLE 513 (638)
T ss_pred HHH-------HHcCCeEEE-EeCCHHHHHHhCCEE-EEEECCEEEEcCCCHH
Confidence 322 222111111 239999999999999 788899886 556554
No 307
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.16 E-value=1.7e-11 Score=129.95 Aligned_cols=162 Identities=19% Similarity=0.237 Sum_probs=98.8
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~i 90 (406)
--.+++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. ..|.||...-..-
T Consensus 352 nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl-----------~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~ 420 (571)
T TIGR02203 352 SLVIEPGETVALVGRSGSGKSTLVNLIPRF-----------YEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND 420 (571)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc
Confidence 346789999999999999999999999999 7899999999998765433 2467776433333
Q ss_pred EEEeecccccc-ccCCC---------CCcchhhhh---------------HH-hhhchhhhhccc-CCCceEeecCCCCC
Q 015465 91 EIHDIAGLVRG-AHEGQ---------GLGNSFLSH---------------IR-AVDGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 91 ~lvD~~gl~~~-~~~~~---------~l~~~~l~~---------------l~-~ad~ll~vvda~-~~~~il~ld~~~dP 143 (406)
++.|...+... ..... ++. .+... +. .-.--+.++|++ .+|+++++| ||
T Consensus 421 Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~-~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLD---Ep 496 (571)
T TIGR02203 421 TIANNIAYGRTEQADRAEIERALAAAYAQ-DFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILD---EA 496 (571)
T ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcChH-HHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---Cc
Confidence 44443333221 00000 000 00000 00 000114566666 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
++.+|..+++.+...+ .... +.+ .-.+|+... ...||++ ..|++|++...|
T Consensus 497 ts~LD~~~~~~i~~~L-------~~~~~~~ti-IiitH~~~~-~~~~D~i-i~l~~g~i~~~g 549 (571)
T TIGR02203 497 TSALDNESERLVQAAL-------ERLMQGRTT-LVIAHRLST-IEKADRI-VVMDDGRIVERG 549 (571)
T ss_pred cccCCHHHHHHHHHHH-------HHHhCCCEE-EEEehhhHH-HHhCCEE-EEEeCCEEEeeC
Confidence 9999999865443322 1111 011 112377744 5668888 677888776544
No 308
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.16 E-value=2e-11 Score=128.10 Aligned_cols=170 Identities=18% Similarity=0.250 Sum_probs=99.5
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcC-Ccc---hh--------hhh--hhccC
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DER---FE--------WLC--QLFKP 82 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~-g~~---~~--------~l~--~~~~p 82 (406)
....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++ |.. +. .+. ..|.|
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~ 371 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV-----------LEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILH 371 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEc
Confidence 4456889999999999999999999999999 67899999985 421 11 111 24556
Q ss_pred CC-CcCceeEEEeeccccc--cccCC--CCCcchhhhhHHhh-------------------hchhhhhccc-CCCceEee
Q 015465 83 KS-AVPAFLEIHDIAGLVR--GAHEG--QGLGNSFLSHIRAV-------------------DGIFHVLRAF-EDPDIIHV 137 (406)
Q Consensus 83 ~~-~~~~~i~lvD~~gl~~--~~~~~--~~l~~~~l~~l~~a-------------------d~ll~vvda~-~~~~il~l 137 (406)
|. .....+++.|...+.. ..... ......+++.+... .-.+.+++++ .+|+++++
T Consensus 372 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLll 451 (520)
T TIGR03269 372 QEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVIL 451 (520)
T ss_pred cCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 54 2222334444332110 00000 00000011111000 0114455555 68999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 138 d~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
| ||++.+|+...+.....+..+.+ .....+ .-.+|+...+..+|+++ .+|.+|+++..++
T Consensus 452 D---EPt~~LD~~~~~~l~~~l~~l~~---~~g~tv-i~vsHd~~~~~~~~d~i-~~l~~G~i~~~g~ 511 (520)
T TIGR03269 452 D---EPTGTMDPITKVDVTHSILKARE---EMEQTF-IIVSHDMDFVLDVCDRA-ALMRDGKIVKIGD 511 (520)
T ss_pred e---CCcccCCHHHHHHHHHHHHHHHH---HcCcEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9 99999999986554433221111 101111 11239999999999999 7889998876553
No 309
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.16 E-value=1.9e-11 Score=116.31 Aligned_cols=48 Identities=19% Similarity=0.125 Sum_probs=39.5
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
....+.+|+++||+|+||||||||+++|+|... ..|+.|.+.++|.++
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---------~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 26 LNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPA---------YKILEGDILFKGESI 73 (252)
T ss_pred ceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCc---------CcCCCceEEECCEEc
Confidence 345678999999999999999999999999610 257889998888654
No 310
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.16 E-value=2.9e-11 Score=112.94 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=39.0
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP 69 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~ 69 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|+.|.|.++
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~ 68 (224)
T TIGR02324 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN-----------YLPDSGRILVR 68 (224)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEEe
Confidence 344456789999999999999999999999999 67899999987
No 311
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=2.8e-11 Score=113.94 Aligned_cols=154 Identities=18% Similarity=0.235 Sum_probs=99.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-hh----------ccCCC-CcCceeEE
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-QL----------FKPKS-AVPAFLEI 92 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-~~----------~~p~~-~~~~~i~l 92 (406)
.+.+|.|++|||||||+|+++|+ ++|+.|.|.++|.-+.... .. |.-|. +.+..+++
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL-----------~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGL-----------TRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhcc-----------CCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 69999999999999999999999 8999999999997653322 12 33232 44445555
Q ss_pred EeeccccccccCC----------------------CCCcchhhhhHHhhhchhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 93 HDIAGLVRGAHEG----------------------QGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 93 vD~~gl~~~~~~~----------------------~~l~~~~l~~l~~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
..+..+....... .+-|++ ++ +.+-||. ..|+++.+| ||.+.+|.
T Consensus 94 rgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEk--QR-------VAIGRALLt~P~LLLmD---EPLaSLD~ 161 (352)
T COG4148 94 RGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEK--QR-------VAIGRALLTAPELLLMD---EPLASLDL 161 (352)
T ss_pred ecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchh--hH-------HHHHHHHhcCCCeeeec---Cchhhccc
Confidence 5444443222210 001111 11 2344454 689999999 99998888
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
-.+..++-. +++..+.+.--+ .-.+|.+.++.++.|++ -.|++|+....|..
T Consensus 162 ~RK~Eilpy---lERL~~e~~IPI-lYVSHS~~Ev~RLAd~v-V~le~GkV~A~g~~ 213 (352)
T COG4148 162 PRKREILPY---LERLRDEINIPI-LYVSHSLDEVLRLADRV-VVLENGKVKASGPL 213 (352)
T ss_pred chhhHHHHH---HHHHHHhcCCCE-EEEecCHHHHHhhhheE-EEecCCeEEecCcH
Confidence 776444443 233222222111 11249999999999999 89999998887654
No 312
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.15 E-value=5.5e-11 Score=131.76 Aligned_cols=161 Identities=21% Similarity=0.266 Sum_probs=104.0
Q ss_pred cCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh--------hhhhccCCC-
Q 015465 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------LCQLFKPKS- 84 (406)
Q Consensus 14 ~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~--------l~~~~~p~~- 84 (406)
-......|++|+.+|++|+|||||||+|++|||. ..|++|.+.+.|.++.. -..+|-||.
T Consensus 581 v~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~-----------~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d 649 (885)
T KOG0059|consen 581 VRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGE-----------TKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFD 649 (885)
T ss_pred hcceEEEecCCceEEEecCCCCCchhhHHHHhCC-----------ccCCcceEEEecCccccccchhhhhhhcccCCchh
Confidence 3566677899999999999999999999999999 78999999998876532 112566765
Q ss_pred CcCceeEEEeecccc---ccccC-------------------------CCCCcchhhhhHHhhhchhhhhcccCCCceEe
Q 015465 85 AVPAFLEIHDIAGLV---RGAHE-------------------------GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIH 136 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~---~~~~~-------------------------~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ 136 (406)
.+...++.-++.-+. ++... ..+.|++ +++.- .+...++|.+++
T Consensus 650 ~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~k--RkLs~------aialig~p~vi~ 721 (885)
T KOG0059|consen 650 ALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNK--RRLSF------AIALIGDPSVIL 721 (885)
T ss_pred hhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcch--hhHHH------HHHHhcCCCEEE
Confidence 222223322222111 11110 0011111 22222 222236999999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhc-----cccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS-----NDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~-----~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
+| ||+.++|+..+ ..+|++ +....+.+ .+|.+++.+.+|+|+ +++-+|+....|+..
T Consensus 722 LD---EPstGmDP~ar-r~lW~i---------i~~~~k~g~aiiLTSHsMeE~EaLCtR~-aImv~G~l~ciGs~q 783 (885)
T KOG0059|consen 722 LD---EPSTGLDPKAR-RHLWDI---------IARLRKNGKAIILTSHSMEEAEALCTRT-AIMVIGQLRCIGSPQ 783 (885)
T ss_pred ec---CCCCCCCHHHH-HHHHHH---------HHHHHhcCCEEEEEcCCHHHHHHHhhhh-heeecCeeEEecChH
Confidence 99 99999999875 233332 22221111 139999999999999 999999998888654
No 313
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.15 E-value=5.2e-11 Score=125.20 Aligned_cols=123 Identities=21% Similarity=0.231 Sum_probs=78.7
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh------hhccCCCCcCceeEE
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKSAVPAFLEI 92 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~p~~~~~~~i~l 92 (406)
-++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. -.|.||...-..-++
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~-----------~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI 424 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGL-----------LDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTV 424 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccH
Confidence 45789999999999999999999999999 7899999999998876541 146777643333344
Q ss_pred EeeccccccccCCCCCc--------chhhhhH--------H--------hhhchhhhhccc-CCCceEeecCCCCCCchH
Q 015465 93 HDIAGLVRGAHEGQGLG--------NSFLSHI--------R--------AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (406)
Q Consensus 93 vD~~gl~~~~~~~~~l~--------~~~l~~l--------~--------~ad~ll~vvda~-~~~~il~ld~~~dP~~~l 147 (406)
.|+..+.......+.+. ..+...+ . .-.--+.++||+ .+|+++++| ||++.+
T Consensus 425 ~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLD---E~TSaL 501 (529)
T TIGR02868 425 RDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD---EPTEHL 501 (529)
T ss_pred HHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccC
Confidence 44433321110000000 0000000 0 000014566666 799999999 999999
Q ss_pred HHHHHHHh
Q 015465 148 EVISAELR 155 (406)
Q Consensus 148 d~i~~el~ 155 (406)
|..++..+
T Consensus 502 D~~te~~I 509 (529)
T TIGR02868 502 DAGTESEL 509 (529)
T ss_pred CHHHHHHH
Confidence 99886443
No 314
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.15 E-value=5e-11 Score=127.57 Aligned_cols=174 Identities=14% Similarity=0.171 Sum_probs=104.3
Q ss_pred cCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCC---ceeEEEcCCcchhh--h--hhhccCCCC-
Q 015465 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP---NEARVNIPDERFEW--L--CQLFKPKSA- 85 (406)
Q Consensus 14 ~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p---~~G~i~v~g~~~~~--l--~~~~~p~~~- 85 (406)
-.+..+.+++|+.++|+||||||||||+++|+|. ..| ..|.|.++|.++.. + ...|.||..
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~-----------~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~ 109 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR-----------SPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDL 109 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcceeEEEECCEECCHHHHhhhceeeccccc
Confidence 4466788899999999999999999999999998 334 37999999976532 1 124666653
Q ss_pred cCceeEEEeeccccccccCCCC--------CcchhhhhHHhh---hc-----------------hhhhhccc-CCCceEe
Q 015465 86 VPAFLEIHDIAGLVRGAHEGQG--------LGNSFLSHIRAV---DG-----------------IFHVLRAF-EDPDIIH 136 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~~~--------l~~~~l~~l~~a---d~-----------------ll~vvda~-~~~~il~ 136 (406)
....+++.|+..+......... ....+++.+... |. -+.+.++. .+|++++
T Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vll 189 (617)
T TIGR00955 110 FIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLF 189 (617)
T ss_pred cCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEE
Confidence 3334555554433211000000 000111111000 00 12233333 5899999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchH-HHHHHHHHHHHHhhCCCccccCCCC
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK-IEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~-~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
+| ||++++|..........+.. +..-+..+ .-..|+.. ++.+++|++ .+|.+|+.++.|+.+
T Consensus 190 lD---EPtsgLD~~~~~~l~~~L~~----l~~~g~tv-i~~~hq~~~~i~~~~D~i-~ll~~G~~v~~G~~~ 252 (617)
T TIGR00955 190 CD---EPTSGLDSFMAYSVVQVLKG----LAQKGKTI-ICTIHQPSSELFELFDKI-ILMAEGRVAYLGSPD 252 (617)
T ss_pred ee---CCCcchhHHHHHHHHHHHHH----HHhCCCEE-EEEeCCCCHHHHHHhceE-EEeeCCeEEEECCHH
Confidence 99 99999999986443332211 11101111 01128874 788999999 889999999888754
No 315
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.15 E-value=1.4e-11 Score=130.37 Aligned_cols=166 Identities=14% Similarity=0.204 Sum_probs=97.5
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCC-cCceeEEE
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIH 93 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~-~~~~i~lv 93 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.+++.. ...|.||.. ....+++.
T Consensus 22 ~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~-----------~~p~~G~i~~~~~~----~i~~v~Q~~~~~~~~tv~ 86 (552)
T TIGR03719 22 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-----------DKEFNGEARPAPGI----KVGYLPQEPQLDPTKTVR 86 (552)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCC----EEEEEeccCCCCCCCcHH
Confidence 344556789999999999999999999999999 67889998876421 123444431 22223333
Q ss_pred eecccccc-----------------ccCCC----------------------------------CC--cchhhhhH-Hhh
Q 015465 94 DIAGLVRG-----------------AHEGQ----------------------------------GL--GNSFLSHI-RAV 119 (406)
Q Consensus 94 D~~gl~~~-----------------~~~~~----------------------------------~l--~~~~l~~l-~~a 119 (406)
|...+... ..... ++ ..+....+ ..-
T Consensus 87 e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGq 166 (552)
T TIGR03719 87 ENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGE 166 (552)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHH
Confidence 33221100 00000 00 00000000 000
Q ss_pred hchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCC
Q 015465 120 DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (406)
Q Consensus 120 d~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g 198 (406)
...+.+++++ .+|+++++| ||++.+|....+..... +..+...+.. .+|+...+..+|+++ ..|++|
T Consensus 167 kqrv~la~al~~~p~lLLLD---EPt~~LD~~~~~~l~~~-------L~~~~~tvIi-isHd~~~~~~~~d~v-~~l~~g 234 (552)
T TIGR03719 167 RRRVALCRLLLSKPDMLLLD---EPTNHLDAESVAWLEQH-------LQEYPGTVVA-VTHDRYFLDNVAGWI-LELDRG 234 (552)
T ss_pred HHHHHHHHHHhcCCCEEEEc---CCCCCCChHHHHHHHHH-------HHhCCCeEEE-EeCCHHHHHhhcCeE-EEEECC
Confidence 0114455555 689999999 99999999986433222 2211111111 239999999999999 888999
Q ss_pred Ccc-ccCCCC
Q 015465 199 KDV-RLGDWK 207 (406)
Q Consensus 199 ~~~-~~~~~t 207 (406)
+++ +.|+.+
T Consensus 235 ~i~~~~g~~~ 244 (552)
T TIGR03719 235 RGIPWEGNYS 244 (552)
T ss_pred EEEEecCCHH
Confidence 875 456554
No 316
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=1.8e-11 Score=116.36 Aligned_cols=175 Identities=14% Similarity=0.161 Sum_probs=98.0
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------h--hhhccCCCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------L--CQLFKPKSA 85 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l--~~~~~p~~~ 85 (406)
.+....+.+|++++|+|+||||||||+++|+|..... ...|++|.|.++|.++.. . ...|.|+..
T Consensus 20 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14266 20 KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLI------PGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93 (250)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccC------CCCCCccEEEECCEEcccccccHHHHhhheEEEecCC
Confidence 3445668899999999999999999999999972100 011478999999876532 1 124555552
Q ss_pred cCceeEEEeeccccccccC--C-CCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeecCC
Q 015465 86 VPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~--~-~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld~~ 140 (406)
.....++.|...+...... . ......+...++.++ -.+.++++. .+|+++++|
T Consensus 94 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD-- 171 (250)
T PRK14266 94 NPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMD-- 171 (250)
T ss_pred ccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc--
Confidence 1111233332221100000 0 000000000111110 014455665 789999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++++|..........+..+ .. ...+ .-.+|+...+...|+++ .++.+|++...++
T Consensus 172 -EP~~gLD~~~~~~l~~~l~~~----~~-~~ti-ii~sh~~~~~~~~~~~i-~~l~~G~i~~~g~ 228 (250)
T PRK14266 172 -EPCSALDPISTTKIEDLIHKL----KE-DYTI-VIVTHNMQQATRVSKYT-SFFLNGEIIESGL 228 (250)
T ss_pred -CCCccCCHHHHHHHHHHHHHH----hc-CCeE-EEEECCHHHHHhhcCEE-EEEECCeEEEeCC
Confidence 999999998754333322111 10 1111 11239999999999988 6788898876554
No 317
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.4e-11 Score=116.21 Aligned_cols=174 Identities=17% Similarity=0.198 Sum_probs=96.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|..... | ..|+.|.|.++|.++.. +. ..|.+|...
T Consensus 38 ~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI---P---GAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccc---c---CCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 344567899999999999999999999999982100 0 00358999998866421 11 135555421
Q ss_pred CceeEEEeeccccccccC-CCCCcchhhhhHHhh---------------------hchhhhhccc-CCCceEeecCCCCC
Q 015465 87 PAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~-~~~l~~~~l~~l~~a---------------------d~ll~vvda~-~~~~il~ld~~~dP 143 (406)
....++.|...+...... ...........++.+ .-.+.+++++ .+|+++++| ||
T Consensus 112 l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD---EP 188 (274)
T PRK14265 112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMD---EP 188 (274)
T ss_pred cccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEe---CC
Confidence 111133332222100000 000000000000000 0113455555 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhh---------CCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ---------DGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~---------~g~~~~~~~ 205 (406)
++++|....+....-+..+ .. ...+ .-.+|+...+..+|+++ .+|+ +|+++..++
T Consensus 189 t~~LD~~~~~~l~~~L~~~----~~-~~ti-ii~sH~~~~~~~~~d~i-~~l~~~~~~~~~~~G~~~~~g~ 252 (274)
T PRK14265 189 CSALDPISTRQVEELCLEL----KE-QYTI-IMVTHNMQQASRVADWT-AFFNTEIDEYGKRRGKLVEFSP 252 (274)
T ss_pred cccCCHHHHHHHHHHHHHH----hc-CCEE-EEEeCCHHHHHHhCCEE-EEEecccccccccCceEEEeCC
Confidence 9999999865443322211 10 0111 11239999999999999 7776 677765544
No 318
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.14 E-value=5.3e-11 Score=111.49 Aligned_cols=126 Identities=15% Similarity=0.096 Sum_probs=74.5
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-----hh--hhccCCCCcC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPKSAVP 87 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-----l~--~~~~p~~~~~ 87 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. +. ..|.++....
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l 92 (225)
T PRK10247 24 NNISFSLRAGEFKLITGPSGCGKSTLLKIVASL-----------ISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTL 92 (225)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccc
Confidence 344566889999999999999999999999998 67899999998865421 11 1344544211
Q ss_pred ceeEEEeeccccc---cccCCCCCcchhhhhHHhhh---------------chhhhhccc-CCCceEeecCCCCCCchHH
Q 015465 88 AFLEIHDIAGLVR---GAHEGQGLGNSFLSHIRAVD---------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (406)
Q Consensus 88 ~~i~lvD~~gl~~---~~~~~~~l~~~~l~~l~~ad---------------~ll~vvda~-~~~~il~ld~~~dP~~~ld 148 (406)
...++.|...+.. ...........+++.+...+ -.+.++++. .+|+++++| ||+.++|
T Consensus 93 ~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD 169 (225)
T PRK10247 93 FGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD---EITSALD 169 (225)
T ss_pred ccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCC
Confidence 1123333322210 00000000011111111100 013455555 799999999 9999999
Q ss_pred HHHHHH
Q 015465 149 VISAEL 154 (406)
Q Consensus 149 ~i~~el 154 (406)
....+.
T Consensus 170 ~~~~~~ 175 (225)
T PRK10247 170 ESNKHN 175 (225)
T ss_pred HHHHHH
Confidence 987543
No 319
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.14 E-value=2.4e-11 Score=131.88 Aligned_cols=158 Identities=21% Similarity=0.255 Sum_probs=100.5
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~ 89 (406)
..-++++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. ..|.||......
T Consensus 476 i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~-----------~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~ 544 (694)
T TIGR01846 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL-----------YTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS 544 (694)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehh
Confidence 3456789999999999999999999999999 7899999999998775432 246666643333
Q ss_pred eEEEeeccccccccCC-------------------------------CCCcchhhhhHHhhhchhhhhccc-CCCceEee
Q 015465 90 LEIHDIAGLVRGAHEG-------------------------------QGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHV 137 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~-------------------------------~~l~~~~l~~l~~ad~ll~vvda~-~~~~il~l 137 (406)
-++.|...+....... ..+..--.++ +.++|++ .+|+++++
T Consensus 545 ~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qr-------i~lARall~~~~ilil 617 (694)
T TIGR01846 545 RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQR-------IAIARALVGNPRILIF 617 (694)
T ss_pred hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHH-------HHHHHHHHhCCCEEEE
Confidence 3333333322110000 0000000122 3455555 69999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 138 d~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
| ||++.+|..++......+ ..+. ..+ .-.+|..+.+. .||++ ..|++|++...|+
T Consensus 618 D---Epts~LD~~~~~~i~~~l-------~~~~~~~t~-i~itH~~~~~~-~~d~i-i~l~~G~i~~~g~ 674 (694)
T TIGR01846 618 D---EATSALDYESEALIMRNM-------REICRGRTV-IIIAHRLSTVR-ACDRI-IVLEKGQIAESGR 674 (694)
T ss_pred E---CCCcCCCHHHHHHHHHHH-------HHHhCCCEE-EEEeCChHHHH-hCCEE-EEEeCCEEEEeCC
Confidence 9 999999999864443322 1111 011 11238887664 59998 8889998887664
No 320
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.14 E-value=2.4e-11 Score=117.16 Aligned_cols=173 Identities=16% Similarity=0.140 Sum_probs=97.5
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------hh--hhccCCCCcC
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSAVP 87 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~p~~~~~ 87 (406)
....+.+|++++|+|+||||||||+++|+|...+. ...|++|.+.++|.++.. +. ..|.++....
T Consensus 44 vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~------~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 117 (272)
T PRK14236 44 ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLV------DNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117 (272)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCc------cCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc
Confidence 34567899999999999999999999999983100 001578999998876531 11 1355554211
Q ss_pred ceeEEEeeccccccccC--CC----CCcchhhhhHHh------------------hhchhhhhccc-CCCceEeecCCCC
Q 015465 88 AFLEIHDIAGLVRGAHE--GQ----GLGNSFLSHIRA------------------VDGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~--~~----~l~~~~l~~l~~------------------ad~ll~vvda~-~~~~il~ld~~~d 142 (406)
...++.|...+...... .. ......++.+.. -.-.+.+++++ .+|+++++| |
T Consensus 118 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD---E 194 (272)
T PRK14236 118 FPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLD---E 194 (272)
T ss_pred CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEe---C
Confidence 11133333221100000 00 000000000000 00014455665 799999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++++|.........-+..+ .+ ...+ .-.+|+...+.++|+++ ..|.+|++...++
T Consensus 195 Pt~gLD~~~~~~l~~~L~~~----~~-~~ti-iivtH~~~~~~~~~d~i-~~l~~G~i~~~g~ 250 (272)
T PRK14236 195 PTSALDPISTLKIEELITEL----KS-KYTI-VIVTHNMQQAARVSDYT-AFMYMGKLVEYGD 250 (272)
T ss_pred CcccCCHHHHHHHHHHHHHH----Hh-CCeE-EEEeCCHHHHHhhCCEE-EEEECCEEEecCC
Confidence 99999998864433322111 11 1111 11239999999999999 8889998876554
No 321
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.14 E-value=4.8e-11 Score=110.36 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=73.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh--h--hhhccCCC-CcCcee
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--L--CQLFKPKS-AVPAFL 90 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~--l--~~~~~p~~-~~~~~i 90 (406)
+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|..+.. . ...|.++. ......
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (207)
T PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL-----------LPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPAL 88 (207)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCC
Confidence 44556889999999999999999999999999 67899999998865321 1 11344432 222223
Q ss_pred EEEeeccccccccC-CCCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCchHHHHHHHH
Q 015465 91 EIHDIAGLVRGAHE-GQGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAEL 154 (406)
Q Consensus 91 ~lvD~~gl~~~~~~-~~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el 154 (406)
++.|...+...... .......+++.+... .-.+.+++++ .+|+++++| ||++++|....+.
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~ 165 (207)
T PRK13539 89 TVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILD---EPTAALDAAAVAL 165 (207)
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHH
Confidence 33332221110000 000000111111000 0114455665 789999999 9999999998644
Q ss_pred h
Q 015465 155 R 155 (406)
Q Consensus 155 ~ 155 (406)
.
T Consensus 166 l 166 (207)
T PRK13539 166 F 166 (207)
T ss_pred H
Confidence 3
No 322
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.14 E-value=3e-11 Score=109.95 Aligned_cols=167 Identities=20% Similarity=0.297 Sum_probs=98.6
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh---------hc-cCCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ---------LF-KPKS 84 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~---------~~-~p~~ 84 (406)
....-.+..|+.+-+||.||||||||+|+++|. ..|++|.|.++|.++...+. .| .|..
T Consensus 23 ~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~-----------l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~ 91 (263)
T COG1101 23 NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD-----------LKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLA 91 (263)
T ss_pred hcCceeecCCceEEEEcCCCccHHHHHHHhhCc-----------cccCCceEEECceecccCCHHHHhhHHHHHhcchhh
Confidence 344556889999999999999999999999999 88999999999998765442 22 3433
Q ss_pred CcCceeEEEeeccccccccCCCCC--------cchhhhhHHh--------------------hhchhhhhcccCCCceEe
Q 015465 85 AVPAFLEIHDIAGLVRGAHEGQGL--------GNSFLSHIRA--------------------VDGIFHVLRAFEDPDIIH 136 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~~~~~~~l--------~~~~l~~l~~--------------------ad~ll~vvda~~~~~il~ 136 (406)
.....+++-+...+.....+..++ ...|...+.. -.++..+.-..+.|++++
T Consensus 92 gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLL 171 (263)
T COG1101 92 GTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILL 171 (263)
T ss_pred CCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEE
Confidence 444445555544443222111111 1111111111 112233334457899999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhc---cccchHHHHHHHHHHHHHhhCCCcccc
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS---NDKQLKIEHELCQRVKAWLQDGKDVRL 203 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~---~~h~~~~v~~l~~~i~~~L~~g~~~~~ 203 (406)
+|+ -+..+|+-..++++. +...+ +.+. +.. .+|+++.....=+|. ..|++|+++.+
T Consensus 172 LDE---HTAALDPkta~~vm~----lT~ki--V~~~-klTtlMVTHnm~~Al~yG~Rl-ImLh~G~IvlD 230 (263)
T COG1101 172 LDE---HTAALDPKTAEFVME----LTAKI--VEEH-KLTTLMVTHNMEDALDYGNRL-IMLHSGKIVLD 230 (263)
T ss_pred ecc---hhhcCCcchHHHHHH----HHHHH--HHhc-CCceEEEeccHHHHHhhCCeE-EEEeCCeEEEE
Confidence 995 333344433322221 11111 1111 111 249998888888888 88999998865
No 323
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.14 E-value=1.4e-11 Score=131.91 Aligned_cols=171 Identities=16% Similarity=0.215 Sum_probs=99.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh------------------hh-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE------------------WL- 76 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~------------------~l- 76 (406)
...-.+.+|+++||+|+||||||||+++|+|. ..|++|.|.+.|..+. .+
T Consensus 34 ~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl-----------l~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r 102 (623)
T PRK10261 34 NLSFSLQRGETLAIVGESGSGKSVTALALMRL-----------LEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVR 102 (623)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCCeEEEECCEEeccccccccccccCCHHHHHHHh
Confidence 44556789999999999999999999999999 6788999888764220 00
Q ss_pred --hhhccCCCC---cCceeEEEeeccccc----cccCCC--CCcchhhhhHHhh------h-----------chhhhhcc
Q 015465 77 --CQLFKPKSA---VPAFLEIHDIAGLVR----GAHEGQ--GLGNSFLSHIRAV------D-----------GIFHVLRA 128 (406)
Q Consensus 77 --~~~~~p~~~---~~~~i~lvD~~gl~~----~~~~~~--~l~~~~l~~l~~a------d-----------~ll~vvda 128 (406)
...|.+|.. ....+++.+...+.. +..... .....+++.+... + --+.+++|
T Consensus 103 ~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~A 182 (623)
T PRK10261 103 GADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMA 182 (623)
T ss_pred CCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHH
Confidence 012334431 122233333222110 000000 0000111111110 0 01345555
Q ss_pred c-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 129 F-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 129 ~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+ .+|+++++| ||++.+|+...+..+..+..+.+ .....+ .-.+|++..+..+||++ .+|++|+++..++
T Consensus 183 L~~~P~lLllD---EPt~~LD~~~~~~l~~ll~~l~~---~~g~tv-i~itHdl~~~~~~adri-~vl~~G~i~~~g~ 252 (623)
T PRK10261 183 LSCRPAVLIAD---EPTTALDVTIQAQILQLIKVLQK---EMSMGV-IFITHDMGVVAEIADRV-LVMYQGEAVETGS 252 (623)
T ss_pred HhCCCCEEEEe---CCCCccCHHHHHHHHHHHHHHHH---hcCCEE-EEEcCCHHHHHHhCCEE-EEeeCCeecccCC
Confidence 5 699999999 99999999987555543322211 111111 11239999999999999 8899999876543
No 324
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1.5e-11 Score=132.07 Aligned_cols=45 Identities=27% Similarity=0.415 Sum_probs=39.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~ 71 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.+++.
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~-----------~~pd~G~I~~~~~ 63 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLKNE-----------ISADGGSYTFPGN 63 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCC
Confidence 44456889999999999999999999999998 6789999988764
No 325
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.13 E-value=2.5e-11 Score=128.07 Aligned_cols=166 Identities=16% Similarity=0.228 Sum_probs=98.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+..-.+++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. ..|.||.....
T Consensus 336 ~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf 404 (544)
T TIGR01842 336 GISFRLQAGEALAIIGPSGSGKSTLARLIVGI-----------WPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELF 404 (544)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEehhhCCHHHHhhheEEecCCcccc
Confidence 44456789999999999999999999999999 7899999999998764422 24666653222
Q ss_pred eeEEEeeccccccccCCCCC--------cchhhhhHH----------------hhhchhhhhccc-CCCceEeecCCCCC
Q 015465 89 FLEIHDIAGLVRGAHEGQGL--------GNSFLSHIR----------------AVDGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l--------~~~~l~~l~----------------~ad~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.-++.|...+.......+.+ ...+.+.+. .-.--+.++|+. .+|+++++| ||
T Consensus 405 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililD---Ep 481 (544)
T TIGR01842 405 PGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD---EP 481 (544)
T ss_pred cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEe---CC
Confidence 22333333221110000000 000000000 000013455665 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHH---HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVE---KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~---~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|...++..... +..+. +.+ .-.+|.... ...||++ ..|++|+++..|+
T Consensus 482 ts~LD~~~~~~i~~~-------l~~~~~~~~tv-i~ith~~~~-~~~~d~i-~~l~~G~i~~~g~ 536 (544)
T TIGR01842 482 NSNLDEEGEQALANA-------IKALKARGITV-VVITHRPSL-LGCVDKI-LVLQDGRIARFGE 536 (544)
T ss_pred ccccCHHHHHHHHHH-------HHHHhhCCCEE-EEEeCCHHH-HHhCCEE-EEEECCEEEeeCC
Confidence 999999886443222 21111 111 111388765 4568988 7889998876664
No 326
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1.7e-11 Score=128.92 Aligned_cols=44 Identities=27% Similarity=0.461 Sum_probs=38.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g 70 (406)
.....+.+|+++||+|+||||||||+++|+|. ..|++|.|.+++
T Consensus 19 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~ 62 (530)
T PRK15064 19 NISVKFGGGNRYGLIGANGCGKSTFMKILGGD-----------LEPSAGNVSLDP 62 (530)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecC
Confidence 44556889999999999999999999999999 678899998876
No 327
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.13 E-value=4e-11 Score=114.59 Aligned_cols=167 Identities=14% Similarity=0.157 Sum_probs=94.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|.....
T Consensus 39 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~ 107 (257)
T cd03288 39 HVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM-----------VDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILF 107 (257)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc-----------cCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCccc
Confidence 33456789999999999999999999999999 6789999999987654321 13445442111
Q ss_pred eeEEEeeccccccccC-C-------CCCcchhhhh---------------HHh-hhchhhhhccc-CCCceEeecCCCCC
Q 015465 89 FLEIHDIAGLVRGAHE-G-------QGLGNSFLSH---------------IRA-VDGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~-~-------~~l~~~~l~~---------------l~~-ad~ll~vvda~-~~~~il~ld~~~dP 143 (406)
..++.+.......... . .++. .++.. +.. ..--+.+++++ .+|+++++| ||
T Consensus 108 ~~tv~~nl~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EP 183 (257)
T cd03288 108 SGSIRFNLDPECKCTDDRLWEALEIAQLK-NMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMD---EA 183 (257)
T ss_pred ccHHHHhcCcCCCCCHHHHHHHHHHhCcH-HHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CC
Confidence 1121111111100000 0 0000 00000 000 00013455555 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|....+.....+. + +.. ...+ .-.+|+...+.. |+++ ..|.+|+++..++
T Consensus 184 t~gLD~~~~~~l~~~l~---~-~~~-~~ti-ii~sh~~~~~~~-~dri-~~l~~G~i~~~g~ 237 (257)
T cd03288 184 TASIDMATENILQKVVM---T-AFA-DRTV-VTIAHRVSTILD-ADLV-LVLSRGILVECDT 237 (257)
T ss_pred ccCCCHHHHHHHHHHHH---H-hcC-CCEE-EEEecChHHHHh-CCEE-EEEECCEEEEeCC
Confidence 99999987543322211 1 100 1111 111388887765 8988 7888898876543
No 328
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.13 E-value=2.2e-11 Score=129.41 Aligned_cols=166 Identities=16% Similarity=0.209 Sum_probs=99.6
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~i 90 (406)
.-.+++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. ..|.||......-
T Consensus 360 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 428 (574)
T PRK11160 360 SLQIKAGEKVALLGRTGCGKSTLLQLLTRA-----------WDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA 428 (574)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc
Confidence 345789999999999999999999999999 7899999999998765432 1466665332233
Q ss_pred EEEeeccccccccCCCCCc--------chhhhh--------------H-Hhhhchhhhhccc-CCCceEeecCCCCCCch
Q 015465 91 EIHDIAGLVRGAHEGQGLG--------NSFLSH--------------I-RAVDGIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (406)
Q Consensus 91 ~lvD~~gl~~~~~~~~~l~--------~~~l~~--------------l-~~ad~ll~vvda~-~~~~il~ld~~~dP~~~ 146 (406)
++.|...+.......+.+. ..+... + ..-.--+.++|+. .+|+++++| ||++.
T Consensus 429 ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililD---E~ts~ 505 (574)
T PRK11160 429 TLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLD---EPTEG 505 (574)
T ss_pred cHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCccc
Confidence 4444333321100000000 000000 0 0000113455665 699999999 99999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+|..+++.+...+..+ .+ .+.+ .-.+|....+. .+|++ ..|++|++...|+
T Consensus 506 lD~~t~~~i~~~l~~~---~~--~~tv-iiitHr~~~~~-~~d~i-~~l~~G~i~~~g~ 556 (574)
T PRK11160 506 LDAETERQILELLAEH---AQ--NKTV-LMITHRLTGLE-QFDRI-CVMDNGQIIEQGT 556 (574)
T ss_pred CCHHHHHHHHHHHHHH---cC--CCEE-EEEecChhHHH-hCCEE-EEEeCCeEEEeCC
Confidence 9999875443322111 00 0010 11138887664 48988 7789998876654
No 329
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.9e-11 Score=124.01 Aligned_cols=160 Identities=22% Similarity=0.296 Sum_probs=99.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~~~~~ 88 (406)
+..-.+.+|++++|+|++||||||+++.|+|. .+|++|+|..+|.++..+.. .+.+|+.--+
T Consensus 356 ~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~-----------~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF 424 (573)
T COG4987 356 NFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA-----------WDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF 424 (573)
T ss_pred ccceeecCCCeEEEECCCCCCHHHHHHHHHhc-----------cCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHH
Confidence 34446789999999999999999999999999 78999999999987654432 1233331111
Q ss_pred eeEEEee-------------------ccc---ccccc--------C-C--CCCcchhhhhHHhhhchhhhhcccCCCceE
Q 015465 89 FLEIHDI-------------------AGL---VRGAH--------E-G--QGLGNSFLSHIRAVDGIFHVLRAFEDPDII 135 (406)
Q Consensus 89 ~i~lvD~-------------------~gl---~~~~~--------~-~--~~l~~~~l~~l~~ad~ll~vvda~~~~~il 135 (406)
.=++.|+ +|+ ..... + | .+-|++ +++..+.++++ |..+.
T Consensus 425 ~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~--rRLAlAR~LL~------dapl~ 496 (573)
T COG4987 425 SGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGER--RRLALARALLH------DAPLW 496 (573)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHH--HHHHHHHHHHc------CCCeE
Confidence 1111111 111 11110 0 0 111222 55666666666 88899
Q ss_pred eecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHH-HHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVE-KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 136 ~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~-~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
++| ||+.++|.+.+.-++.-+ .+..+ +.+ .-.+|.+..+ +-||+| .++++|+++..|..
T Consensus 497 lLD---EPTegLD~~TE~~vL~ll------~~~~~~kTl-l~vTHrL~~l-e~~drI-ivl~~Gkiie~G~~ 556 (573)
T COG4987 497 LLD---EPTEGLDPITERQVLALL------FEHAEGKTL-LMVTHRLRGL-ERMDRI-IVLDNGKIIEEGTH 556 (573)
T ss_pred Eec---CCcccCChhhHHHHHHHH------HHHhcCCeE-EEEecccccH-hhcCEE-EEEECCeeeecCCH
Confidence 999 999999999874332221 12221 111 1113877664 568888 88999999877653
No 330
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.13 E-value=2.6e-11 Score=129.10 Aligned_cols=165 Identities=19% Similarity=0.264 Sum_probs=100.1
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~ 89 (406)
..-++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. ..|.||...-..
T Consensus 354 inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 422 (588)
T PRK13657 354 VSFEAKPGQTVAIVGPTGAGKSTLINLLQRV-----------FDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN 422 (588)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccccc
Confidence 3356779999999999999999999999999 7899999999998765432 146676643333
Q ss_pred eEEEeeccccccccCCCCCc--------chhhhhH-Hhhh---------------chhhhhccc-CCCceEeecCCCCCC
Q 015465 90 LEIHDIAGLVRGAHEGQGLG--------NSFLSHI-RAVD---------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~~l~--------~~~l~~l-~~ad---------------~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
-++.|...+.......+.+- ..+...+ ...| --+.++|++ .+|+++++| ||+
T Consensus 423 ~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLD---Ept 499 (588)
T PRK13657 423 RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD---EAT 499 (588)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCc
Confidence 34444433321110000000 0000000 0000 014456665 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+.+|..+++.+...+ .... +.+ .-.+|....+ +.+|++ ..|++|++...|+
T Consensus 500 s~LD~~t~~~i~~~l-------~~~~~~~tv-IiitHr~~~~-~~~D~i-i~l~~G~i~~~g~ 552 (588)
T PRK13657 500 SALDVETEAKVKAAL-------DELMKGRTT-FIIAHRLSTV-RNADRI-LVFDNGRVVESGS 552 (588)
T ss_pred cCCCHHHHHHHHHHH-------HHHhcCCEE-EEEEecHHHH-HhCCEE-EEEECCEEEEeCC
Confidence 999998865443322 1111 111 1123887654 568988 7788898775554
No 331
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=2.9e-11 Score=115.09 Aligned_cols=173 Identities=16% Similarity=0.200 Sum_probs=96.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-------h--hhhccCCCCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------L--CQLFKPKSAV 86 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l--~~~~~p~~~~ 86 (406)
+....+.+|++++|+|+||||||||+++|+|.... .| ..+++|.|.++|.++.. + ...|.+|...
T Consensus 23 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 23 GIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL---IP---GVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---CC---CCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 34456889999999999999999999999997210 00 01258999998876521 1 1235555421
Q ss_pred CceeEEEeeccccc---cccCCCCCcchhhhhHHhhh---------------------chhhhhccc-CCCceEeecCCC
Q 015465 87 PAFLEIHDIAGLVR---GAHEGQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 87 ~~~i~lvD~~gl~~---~~~~~~~l~~~~l~~l~~ad---------------------~ll~vvda~-~~~~il~ld~~~ 141 (406)
....++.+...+.. +..............++.++ -.+.+++++ .+|+++++|
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD--- 173 (252)
T PRK14255 97 PFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLD--- 173 (252)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc---
Confidence 11123333222110 00000000000000000000 013455555 799999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
||++.+|....+.....+..+ .. ...+ .-.+|+...+...|+++ .+|++|++...+
T Consensus 174 EPt~~LD~~~~~~l~~~l~~~----~~-~~ti-i~vsH~~~~~~~~~d~i-~~l~~G~i~~~~ 229 (252)
T PRK14255 174 EPTSALDPISSTQIENMLLEL----RD-QYTI-ILVTHSMHQASRISDKT-AFFLTGNLIEFA 229 (252)
T ss_pred CCCccCCHHHHHHHHHHHHHH----Hh-CCEE-EEEECCHHHHHHhCCEE-EEEECCEEEEeC
Confidence 999999998864433322111 00 0111 11239999999999999 888889877554
No 332
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.8e-11 Score=123.00 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=97.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~~~~~ 88 (406)
....+++.|+++||+|+|||||||++|+|.+. .+ .+|.|.++|+++..... .|.||...-+
T Consensus 370 gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF-----------~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF 437 (591)
T KOG0057|consen 370 GVSFTIPKGEKVAIVGSNGSGKSTILRLLLRF-----------FD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF 437 (591)
T ss_pred ceeEEecCCCEEEEECCCCCCHHHHHHHHHHH-----------hc-cCCcEEECCeeHhhhChHHhhhheeEeCCccccc
Confidence 34557899999999999999999999999999 56 89999999998866432 5888875433
Q ss_pred eeEEEeeccccccccCC--------------------CC----CcchhhhhHHhhhchhhhhccc-CCCceEeecCCCCC
Q 015465 89 FLEIHDIAGLVRGAHEG--------------------QG----LGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~--------------------~~----l~~~~l~~l~~ad~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.=+++....++...... .+ .|++-+..-..-.--+.+.||+ .+++++++| ||
T Consensus 438 ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D---Ea 514 (591)
T KOG0057|consen 438 NDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD---EA 514 (591)
T ss_pred chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec---Cc
Confidence 22222222221110000 00 0000000000000113456666 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccc-----cchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~-----h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
++.+|-..+.-+ ++.+.+.. .+.+ |++.- ..-||+| -.|++|+..-.|+.
T Consensus 515 TS~LD~~TE~~i----------~~~i~~~~-~~rTvI~IvH~l~l-l~~~DkI-~~l~nG~v~e~gth 569 (591)
T KOG0057|consen 515 TSALDSETEREI----------LDMIMDVM-SGRTVIMIVHRLDL-LKDFDKI-IVLDNGTVKEYGTH 569 (591)
T ss_pred ccccchhhHHHH----------HHHHHHhc-CCCeEEEEEecchh-HhcCCEE-EEEECCeeEEeccH
Confidence 999999875222 12222211 1222 66643 3457777 77888887665543
No 333
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.13 E-value=7.5e-12 Score=123.75 Aligned_cols=158 Identities=16% Similarity=0.227 Sum_probs=93.2
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCceeEEEeeccccccc
Q 015465 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 29 liG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~i~lvD~~gl~~~~ 102 (406)
|+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..+..+++.|...+....
T Consensus 1 l~G~nGsGKSTLl~~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 69 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGF-----------EQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKM 69 (325)
T ss_pred CcCCCCCCHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhh
Confidence 5899999999999999999 7799999999987653221 2345554 233334555544332110
Q ss_pred cC-C-CC---CcchhhhhHHhh---h-----------chhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHH
Q 015465 103 HE-G-QG---LGNSFLSHIRAV---D-----------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFM 162 (406)
Q Consensus 103 ~~-~-~~---l~~~~l~~l~~a---d-----------~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l 162 (406)
.. . .. ....+++.+... + -.+.+++++ .+|+++++| ||++.+|....+.....+..+
T Consensus 70 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLD---EP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 70 RKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLD---EPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred cCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCCccCCHHHHHHHHHHHHHH
Confidence 00 0 00 000111111000 0 114455665 789999999 999999999864443332211
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 163 ERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 163 ~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
. ......+.. .+|+..++..+||++ .+|++|++...++
T Consensus 147 ~---~~~g~tiii-vTHd~~e~~~~~d~i-~vl~~G~i~~~g~ 184 (325)
T TIGR01187 147 Q---EQLGITFVF-VTHDQEEAMTMSDRI-AIMRKGKIAQIGT 184 (325)
T ss_pred H---HhcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 1 110111111 239999999999999 8899999876554
No 334
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.12 E-value=2.9e-11 Score=108.51 Aligned_cols=169 Identities=17% Similarity=0.224 Sum_probs=104.0
Q ss_pred cCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCC-cchhhhhh--------hccCCC
Q 015465 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQ--------LFKPKS 84 (406)
Q Consensus 14 ~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g-~~~~~l~~--------~~~p~~ 84 (406)
-..+.-.+.+|+.-.|||||||||||++.+|+|. .+|+.|++.+.| .++..+.. +-.-|.
T Consensus 21 ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK-----------trp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~ 89 (249)
T COG4674 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK-----------TRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQK 89 (249)
T ss_pred eeeeEEEecCCeEEEEECCCCCCceeeeeeeccc-----------CCCCcceEEEcCchhhccCCHHHHHHhccCccccC
Confidence 3445566889999999999999999999999999 789999999988 55433322 222233
Q ss_pred -CcCceeEEEeeccccccccCCC--CCcchhh-hhHHhhhchhhhh-----------------------cc--cCCCceE
Q 015465 85 -AVPAFLEIHDIAGLVRGAHEGQ--GLGNSFL-SHIRAVDGIFHVL-----------------------RA--FEDPDII 135 (406)
Q Consensus 85 -~~~~~i~lvD~~gl~~~~~~~~--~l~~~~l-~~l~~ad~ll~vv-----------------------da--~~~~~il 135 (406)
+++..+++.|+..+.....+.- .+..++. ..-+..|-++.++ .. .++|.++
T Consensus 90 PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lL 169 (249)
T COG4674 90 PTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLL 169 (249)
T ss_pred CeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEE
Confidence 5666677777666543333210 0000000 0001111111111 11 2689999
Q ss_pred eecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc----ccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 136 ~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~----~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
.+| ||+.++---+.+. .. +.+.......+ .|+|..+..+.+++ -.|++|.+++.|+++
T Consensus 170 LlD---EPvAGMTd~Et~~-------ta---eLl~~la~~hsilVVEHDM~Fvr~~A~~V-TVlh~G~VL~EGsld 231 (249)
T COG4674 170 LLD---EPVAGMTDAETEK-------TA---ELLKSLAGKHSILVVEHDMGFVREIADKV-TVLHEGSVLAEGSLD 231 (249)
T ss_pred Eec---CccCCCcHHHHHH-------HH---HHHHHHhcCceEEEEeccHHHHHHhhhee-EEEeccceeecccHH
Confidence 999 8987665443211 11 11112221111 29999999999999 999999999988765
No 335
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.12 E-value=3.6e-11 Score=126.47 Aligned_cols=176 Identities=15% Similarity=0.179 Sum_probs=98.9
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----------hhhccCC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPK 83 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~p~ 83 (406)
......+.+|+++||+|+||||||||+++|+|...+ ....|++|.|.++|.++..+ ...|.+|
T Consensus 26 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~------~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q 99 (529)
T PRK15134 26 NDVSLQIEAGETLALVGESGSGKSVTALSILRLLPS------PPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQ 99 (529)
T ss_pred eceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC------CcCCccceEEEECCEecccCCHHHHHHHhcCceEEEec
Confidence 444556789999999999999999999999999210 00113789999988765321 1235555
Q ss_pred CC---cCceeEEEeeccc----cccccCC--CCCcchhhhhHHhh------h-----------chhhhhccc-CCCceEe
Q 015465 84 SA---VPAFLEIHDIAGL----VRGAHEG--QGLGNSFLSHIRAV------D-----------GIFHVLRAF-EDPDIIH 136 (406)
Q Consensus 84 ~~---~~~~i~lvD~~gl----~~~~~~~--~~l~~~~l~~l~~a------d-----------~ll~vvda~-~~~~il~ 136 (406)
.. .....++.+...+ ..+.... .......++.+... + -.+.+++++ .+|++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~lll 179 (529)
T PRK15134 100 EPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLI 179 (529)
T ss_pred CchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 42 1111121111110 0000000 00000111111110 0 013455665 7999999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
+| ||++.+|+.........+..+.+ .....+ .-.+|+...+..+||++ .+|++|+++..+
T Consensus 180 lD---EPt~~LD~~~~~~l~~~l~~l~~---~~g~tv-i~vtHd~~~~~~~~dri-~~l~~G~i~~~g 239 (529)
T PRK15134 180 AD---EPTTALDVSVQAQILQLLRELQQ---ELNMGL-LFITHNLSIVRKLADRV-AVMQNGRCVEQN 239 (529)
T ss_pred Ec---CCCCccCHHHHHHHHHHHHHHHH---hcCCeE-EEEcCcHHHHHHhcCEE-EEEECCEEEEeC
Confidence 99 99999999986444333221111 001111 11239999999999999 889999877654
No 336
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.9e-11 Score=116.95 Aligned_cols=170 Identities=18% Similarity=0.184 Sum_probs=97.3
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCC-----ceeEEEcCCcchhh-------h--hhhc
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------L--CQLF 80 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p-----~~G~i~v~g~~~~~-------l--~~~~ 80 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..| ++|.|.++|.++.. + ...|
T Consensus 24 ~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl-----------~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 92 (259)
T PRK14260 24 EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI-----------SELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGM 92 (259)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh-----------cCcccCCccceEEEECCEeccccccchHhhhhheEE
Confidence 344566889999999999999999999999998 332 48999998876521 1 1235
Q ss_pred cCCCCcCceeEEEeecccccccc---CCCCCcchhhhhHHhh---------------------hchhhhhccc-CCCceE
Q 015465 81 KPKSAVPAFLEIHDIAGLVRGAH---EGQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDII 135 (406)
Q Consensus 81 ~p~~~~~~~i~lvD~~gl~~~~~---~~~~l~~~~l~~l~~a---------------------d~ll~vvda~-~~~~il 135 (406)
.++.......++.|...+..... ..........+.++.+ .-.+.+++++ .+|+++
T Consensus 93 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 172 (259)
T PRK14260 93 VFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVL 172 (259)
T ss_pred EecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 55542111133333322110000 0000000000000000 0014455665 799999
Q ss_pred eecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhh-----CCCccccCC
Q 015465 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ-----DGKDVRLGD 205 (406)
Q Consensus 136 ~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~-----~g~~~~~~~ 205 (406)
++| ||++++|....+.....+..+ .. ...+ .-.+|+...+..+|+++ .+|+ +|+++..++
T Consensus 173 lLD---EPt~~LD~~~~~~l~~~l~~~----~~-~~ti-ii~tH~~~~i~~~~d~i-~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 173 LMD---EPCSALDPIATMKVEELIHSL----RS-ELTI-AIVTHNMQQATRVSDFT-AFFSTDESRIGQMVEFGV 237 (259)
T ss_pred EEc---CCCccCCHHHHHHHHHHHHHH----hc-CCEE-EEEeCCHHHHHHhcCeE-EEEeccCCCCceEEEeCC
Confidence 999 999999998865443332211 00 0111 11239999999999998 7776 487776553
No 337
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.12 E-value=4.3e-11 Score=115.99 Aligned_cols=163 Identities=15% Similarity=0.175 Sum_probs=89.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEee
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~ 95 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|. ..|.+|.......++.|.
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl-----------~~p~~G~I~i~g~------i~yv~q~~~l~~~tv~en 117 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGE-----------LEPSEGKIKHSGR------ISFSSQFSWIMPGTIKEN 117 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCE------EEEEeCcccccccCHHHH
Confidence 34456889999999999999999999999999 6789999988762 123333311101111111
Q ss_pred ccccccccC--------CCCCcchh--------------hhhHH-hhhchhhhhccc-CCCceEeecCCCCCCchHHHHH
Q 015465 96 AGLVRGAHE--------GQGLGNSF--------------LSHIR-AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (406)
Q Consensus 96 ~gl~~~~~~--------~~~l~~~~--------------l~~l~-~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~ 151 (406)
..+...... ..++...+ ...+. .-.--+.+++++ .+|+++++| ||++.+|+..
T Consensus 118 l~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLD---EPt~gLD~~~ 194 (282)
T cd03291 118 IIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFGYLDVFT 194 (282)
T ss_pred hhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---CCCccCCHHH
Confidence 111000000 00000000 00000 000013344444 699999999 9999999987
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 152 AELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 152 ~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.+.....+ .+.+.. ...+ .-.+|+...+ ..|+++ .+|.+|++...++
T Consensus 195 ~~~l~~~l---l~~~~~-~~tI-iiisH~~~~~-~~~d~i-~~l~~G~i~~~g~ 241 (282)
T cd03291 195 EKEIFESC---VCKLMA-NKTR-ILVTSKMEHL-KKADKI-LILHEGSSYFYGT 241 (282)
T ss_pred HHHHHHHH---HHHhhC-CCEE-EEEeCChHHH-HhCCEE-EEEECCEEEEECC
Confidence 54332211 011110 1111 1113888776 578988 7889998776554
No 338
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.12 E-value=2.9e-11 Score=128.42 Aligned_cols=159 Identities=19% Similarity=0.257 Sum_probs=98.1
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~ 89 (406)
.--++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. ..|.||......
T Consensus 359 inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl-----------~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~ 427 (576)
T TIGR02204 359 LNLTVRPGETVALVGPSGAGKSTLFQLLLRF-----------YDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFA 427 (576)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcccc
Confidence 3356789999999999999999999999999 7899999999998765432 246776643333
Q ss_pred eEEEeeccccccccCCC---------CC------------------cch----hhhhHHhhhchhhhhccc-CCCceEee
Q 015465 90 LEIHDIAGLVRGAHEGQ---------GL------------------GNS----FLSHIRAVDGIFHVLRAF-EDPDIIHV 137 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~---------~l------------------~~~----~l~~l~~ad~ll~vvda~-~~~~il~l 137 (406)
-++.|...+.......+ ++ +.. -.++ +.++|++ .+|+++++
T Consensus 428 ~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qr-------l~laRal~~~~~ilil 500 (576)
T TIGR02204 428 ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQR-------IAIARAILKDAPILLL 500 (576)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHH-------HHHHHHHHhCCCeEEE
Confidence 33333333221100000 00 000 0122 3455555 69999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHH-HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK-SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 138 d~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~-~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
| ||++.+|...++.+... +..+.+ ....-.+|..... ..+|++ ..|++|++...|+
T Consensus 501 D---Epts~lD~~~~~~i~~~-------l~~~~~~~t~IiitH~~~~~-~~~d~v-i~l~~g~~~~~g~ 557 (576)
T TIGR02204 501 D---EATSALDAESEQLVQQA-------LETLMKGRTTLIIAHRLATV-LKADRI-VVMDQGRIVAQGT 557 (576)
T ss_pred e---CcccccCHHHHHHHHHH-------HHHHhCCCEEEEEecchHHH-HhCCEE-EEEECCEEEeeec
Confidence 9 99999999986443222 211110 0001123877554 558888 7788888776554
No 339
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.11 E-value=2.8e-11 Score=127.10 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=50.7
Q ss_pred hhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc
Q 015465 123 FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (406)
Q Consensus 123 l~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~ 201 (406)
+.+++++ .+|+++++| ||++.+|....+.....+..+. ......+ .-.+|+...+..+|+++ ..|++|+++
T Consensus 177 v~iA~al~~~p~lllLD---EPt~~LD~~~~~~l~~~l~~l~---~~~g~tv-iivtHd~~~~~~~~d~i-~~l~~G~i~ 248 (520)
T TIGR03269 177 VVLARQLAKEPFLFLAD---EPTGTLDPQTAKLVHNALEEAV---KASGISM-VLTSHWPEVIEDLSDKA-IWLENGEIK 248 (520)
T ss_pred HHHHHHHhcCCCEEEee---CCcccCCHHHHHHHHHHHHHHH---HhcCcEE-EEEeCCHHHHHHhcCEE-EEEeCCEEe
Confidence 4455665 799999999 9999999998655443322211 1111111 11239999999999999 888999887
Q ss_pred ccCCC
Q 015465 202 RLGDW 206 (406)
Q Consensus 202 ~~~~~ 206 (406)
..++.
T Consensus 249 ~~g~~ 253 (520)
T TIGR03269 249 EEGTP 253 (520)
T ss_pred eecCH
Confidence 65543
No 340
>PRK13409 putative ATPase RIL; Provisional
Probab=99.11 E-value=3.6e-11 Score=127.73 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=85.3
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEE-----------cCCcchhhhhh---------h
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-----------IPDERFEWLCQ---------L 79 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~-----------v~g~~~~~l~~---------~ 79 (406)
.+.+|+++||+||||||||||+++|+|. +.|+.|.+. +.|.++..... .
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~-----------l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGE-----------LIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 6889999999999999999999999999 789999997 67766543211 1
Q ss_pred ccCCCC--cCce--eEEEeecccccccc------CCCCCcc---hhhhhHHh-hhchhhhhccc-CCCceEeecCCCCCC
Q 015465 80 FKPKSA--VPAF--LEIHDIAGLVRGAH------EGQGLGN---SFLSHIRA-VDGIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 80 ~~p~~~--~~~~--i~lvD~~gl~~~~~------~~~~l~~---~~l~~l~~-ad~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
+.++.. .+.. .++.|......... ...++.. +....+.. -.-.+.++.++ .+|+++++| ||+
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLD---EPt 240 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD---EPT 240 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCC
Confidence 122210 0000 00001000000000 0000000 00000000 00013344444 699999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD 197 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~ 197 (406)
+.+|+...+.....+.. +.. ...+ .-.+|++..+..++|++ .+|..
T Consensus 241 s~LD~~~~~~l~~~i~~----l~~-g~tv-IivsHd~~~l~~~~D~v-~vl~~ 286 (590)
T PRK13409 241 SYLDIRQRLNVARLIRE----LAE-GKYV-LVVEHDLAVLDYLADNV-HIAYG 286 (590)
T ss_pred CCCCHHHHHHHHHHHHH----HHC-CCEE-EEEeCCHHHHHHhCCEE-EEEeC
Confidence 99999886443332211 111 1111 11239999999999998 67754
No 341
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=3.3e-11 Score=115.23 Aligned_cols=168 Identities=18% Similarity=0.274 Sum_probs=96.0
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCC------cchhhh-------hhhcc
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD------ERFEWL-------CQLFK 81 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g------~~~~~l-------~~~~~ 81 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.+.| .++... ...|.
T Consensus 27 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~-----------~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~ 95 (257)
T PRK14246 27 KDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL-----------IEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMV 95 (257)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCcCceeEcCEEEECCcccccCCHHHHhcceEEE
Confidence 344456789999999999999999999999999 567776555544 332111 11345
Q ss_pred CCCC-cCceeEEEeecccccccc--CC-CCC---cchhhhhHHh------------------hhchhhhhccc-CCCceE
Q 015465 82 PKSA-VPAFLEIHDIAGLVRGAH--EG-QGL---GNSFLSHIRA------------------VDGIFHVLRAF-EDPDII 135 (406)
Q Consensus 82 p~~~-~~~~i~lvD~~gl~~~~~--~~-~~l---~~~~l~~l~~------------------ad~ll~vvda~-~~~~il 135 (406)
++.. .+..+++.|...+..... .. ... ....++.+.. ..-.+.+++++ .+|+++
T Consensus 96 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~ll 175 (257)
T PRK14246 96 FQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVL 175 (257)
T ss_pred ccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 5442 222234433332211000 00 000 0000011000 00114455666 799999
Q ss_pred eecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 136 ~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++| ||+.++|.........-+ ..+. ..+ .-.+|+...+..+|+++ ..|.+|++...+.
T Consensus 176 llD---EPt~~LD~~~~~~l~~~l-------~~~~~~~ti-ilvsh~~~~~~~~~d~v-~~l~~g~i~~~g~ 235 (257)
T PRK14246 176 LMD---EPTSMIDIVNSQAIEKLI-------TELKNEIAI-VIVSHNPQQVARVADYV-AFLYNGELVEWGS 235 (257)
T ss_pred EEc---CCCccCCHHHHHHHHHHH-------HHHhcCcEE-EEEECCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 999 999999998764333222 2211 111 11239999999999998 8888898876654
No 342
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.11 E-value=5e-11 Score=115.11 Aligned_cols=164 Identities=16% Similarity=0.239 Sum_probs=95.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+....+.+|+++||+|+||||||||+++|+|. .. ..|.|.++|.++..+. ..|.||.....
T Consensus 22 ~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl-----------~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf 89 (275)
T cd03289 22 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-----------LN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIF 89 (275)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-----------cC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccc
Confidence 34456889999999999999999999999999 44 6799999997764321 24556553211
Q ss_pred eeEEEeeccccccccC--------CCCCcchhhhh---------------HH-hhhchhhhhccc-CCCceEeecCCCCC
Q 015465 89 FLEIHDIAGLVRGAHE--------GQGLGNSFLSH---------------IR-AVDGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~--------~~~l~~~~l~~---------------l~-~ad~ll~vvda~-~~~~il~ld~~~dP 143 (406)
..++.|.......... ..++.. +... +. ...-.+.+++|+ .+|+++++| ||
T Consensus 90 ~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~-~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlD---Ep 165 (275)
T cd03289 90 SGTFRKNLDPYGKWSDEEIWKVAEEVGLKS-VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD---EP 165 (275)
T ss_pred hhhHHHHhhhccCCCHHHHHHHHHHcCCHH-HHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---Cc
Confidence 1122222210000000 000000 0000 00 000123455665 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|.........- +.... ..+ .-.+|....+. .|+++ .+|++|+++..++
T Consensus 166 ts~LD~~~~~~l~~~-------l~~~~~~~ti-i~isH~~~~i~-~~dri-~vl~~G~i~~~g~ 219 (275)
T cd03289 166 SAHLDPITYQVIRKT-------LKQAFADCTV-ILSEHRIEAML-ECQRF-LVIEENKVRQYDS 219 (275)
T ss_pred cccCCHHHHHHHHHH-------HHHhcCCCEE-EEEECCHHHHH-hCCEE-EEecCCeEeecCC
Confidence 999999875433222 11111 111 11138887775 49999 8889999887764
No 343
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.11 E-value=2.5e-11 Score=128.40 Aligned_cols=162 Identities=12% Similarity=0.177 Sum_probs=93.0
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCC--cCceeEEEee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA--VPAFLEIHDI 95 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~--~~~~i~lvD~ 95 (406)
...+.+|+++||+|+||||||||+++|+|. ..|++|.|.+.+. . ...|.||.. .+..+++.+.
T Consensus 344 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-----------~~p~~G~i~~~~~-~---~i~~v~q~~~~~~~~~tv~e~ 408 (556)
T PRK11819 344 SFSLPPGGIVGIIGPNGAGKSTLFKMITGQ-----------EQPDSGTIKIGET-V---KLAYVDQSRDALDPNKTVWEE 408 (556)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCc-e---EEEEEeCchhhcCCCCCHHHH
Confidence 345778999999999999999999999999 7799999988432 1 123444431 2222333332
Q ss_pred cccccc---ccCCCCCcchhhhhHHh---------------hhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhh
Q 015465 96 AGLVRG---AHEGQGLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRL 156 (406)
Q Consensus 96 ~gl~~~---~~~~~~l~~~~l~~l~~---------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~ 156 (406)
..+... ..........++..+.. -.--+.+++++ .+|+++++| ||++++|+...+...
T Consensus 409 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l~ 485 (556)
T PRK11819 409 ISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD---EPTNDLDVETLRALE 485 (556)
T ss_pred HHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHHH
Confidence 221100 00000000000111000 00013445555 699999999 999999999865443
Q ss_pred hhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhC-CCcc-ccCCC
Q 015465 157 KDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD-GKDV-RLGDW 206 (406)
Q Consensus 157 ~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~-g~~~-~~~~~ 206 (406)
..+. .+...+.. .+|+...+..+|+++ .+|++ |+.. +.|++
T Consensus 486 ~~l~-------~~~~tvi~-vtHd~~~~~~~~d~i-~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 486 EALL-------EFPGCAVV-ISHDRWFLDRIATHI-LAFEGDSQVEWFEGNF 528 (556)
T ss_pred HHHH-------hCCCeEEE-EECCHHHHHHhCCEE-EEEECCCeEEEecCCH
Confidence 3322 11111111 249999999999998 66775 5554 33443
No 344
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.11 E-value=3.9e-11 Score=132.25 Aligned_cols=157 Identities=20% Similarity=0.298 Sum_probs=105.3
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCCCcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~~~~~~ 89 (406)
..-.++.|+.++|||++||||||+++.|.+. .+|++|.|.++|.++..+.. ..+.|..+.+.
T Consensus 372 ~sl~i~~G~~valVG~SGsGKST~i~LL~Rf-----------ydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~ 440 (1228)
T KOG0055|consen 372 VSLKIPSGQTVALVGPSGSGKSTLIQLLARF-----------YDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA 440 (1228)
T ss_pred eEEEeCCCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhc
Confidence 4456889999999999999999999999999 78999999999988754432 23334444444
Q ss_pred eEEEeeccccccccCCC-------------------------------CCcchhhhhHHhhhchhhhhccc-CCCceEee
Q 015465 90 LEIHDIAGLVRGAHEGQ-------------------------------GLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHV 137 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~-------------------------------~l~~~~l~~l~~ad~ll~vvda~-~~~~il~l 137 (406)
.++.|...+++...... .+..--.++ +.++|+. .+|++++|
T Consensus 441 ~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR-------IAIARalv~~P~ILLL 513 (1228)
T KOG0055|consen 441 TTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR-------IAIARALVRNPKILLL 513 (1228)
T ss_pred ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH-------HHHHHHHHhCCCEEEe
Confidence 45555544443211000 000001123 3345555 59999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhc---cccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS---NDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 138 d~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~---~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
| ||++.||...+.+...- +++..+ .++ .+|.+..+.. .|+| .++++|+++..|+
T Consensus 514 D---EaTSaLD~~se~~Vq~A-------Ld~~~~--grTTivVaHRLStIrn-aD~I-~v~~~G~IvE~G~ 570 (1228)
T KOG0055|consen 514 D---EATSALDAESERVVQEA-------LDKASK--GRTTIVVAHRLSTIRN-ADKI-AVMEEGKIVEQGT 570 (1228)
T ss_pred c---CcccccCHHHHHHHHHH-------HHHhhc--CCeEEEEeeehhhhhc-cCEE-EEEECCEEEEecC
Confidence 9 99999999997555433 332221 111 1399988887 8888 8899999987764
No 345
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.10 E-value=3.8e-11 Score=127.78 Aligned_cols=165 Identities=17% Similarity=0.208 Sum_probs=98.7
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~ 89 (406)
..-.+++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. ..|.||......
T Consensus 354 i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~ 422 (585)
T TIGR01192 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRV-----------YDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN 422 (585)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHccC-----------CCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc
Confidence 3456789999999999999999999999999 7899999999998764432 135666532222
Q ss_pred eEEEeeccccccccCCCCCc--------chhhhh---------------H-Hhhhchhhhhccc-CCCceEeecCCCCCC
Q 015465 90 LEIHDIAGLVRGAHEGQGLG--------NSFLSH---------------I-RAVDGIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~~l~--------~~~l~~---------------l-~~ad~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
-++.|...+.........+. ..+... + ..-.--+.++|++ .+|+++++| ||+
T Consensus 423 ~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililD---Ept 499 (585)
T TIGR01192 423 RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLD---EAT 499 (585)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---CCc
Confidence 33333332221100000000 000000 0 0000013455665 699999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+.+|..+++.....+ ..+. ..+ .-.+|..+.+ ..+|++ ..|++|++...|+
T Consensus 500 s~LD~~~~~~i~~~l-------~~~~~~~tv-I~isH~~~~~-~~~d~i-~~l~~G~i~~~g~ 552 (585)
T TIGR01192 500 SALDVETEARVKNAI-------DALRKNRTT-FIIAHRLSTV-RNADLV-LFLDQGRLIEKGS 552 (585)
T ss_pred cCCCHHHHHHHHHHH-------HHHhCCCEE-EEEEcChHHH-HcCCEE-EEEECCEEEEECC
Confidence 999998864443322 1111 111 1113888776 458988 7888898876554
No 346
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.3e-10 Score=119.44 Aligned_cols=171 Identities=18% Similarity=0.245 Sum_probs=104.4
Q ss_pred CcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCC
Q 015465 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSA 85 (406)
Q Consensus 13 ~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~ 85 (406)
.-.++.-.+++|++++|||++|||||||+++|+|. ..|+.|+|.++|.+...+. ..+.||+.
T Consensus 336 ~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~-----------~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p 404 (559)
T COG4988 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF-----------LAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404 (559)
T ss_pred ccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCc-----------CCCCCceEEECCccccccCHHHHHhHeeeeCCCC
Confidence 34455556889999999999999999999999999 7799999999998876654 24566653
Q ss_pred cCceeEEEeeccccccccCC-------------------CCCcchhhh---hH--Hhhhchhhhhccc-CCCceEeecCC
Q 015465 86 VPAFLEIHDIAGLVRGAHEG-------------------QGLGNSFLS---HI--RAVDGIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~-------------------~~l~~~~l~---~l--~~ad~ll~vvda~-~~~~il~ld~~ 140 (406)
.-..=++.|+..+.+..... .++....-+ .+ .++ --+.+.||+ .+++++++|
T Consensus 405 ~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~-QRlaLARAll~~~~l~llD-- 481 (559)
T COG4988 405 YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQA-QRLALARALLSPASLLLLD-- 481 (559)
T ss_pred ccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHH-HHHHHHHHhcCCCCEEEec--
Confidence 33222333333332221100 000000000 00 000 013455666 588999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
||+..+|.-++++++..+..+.+. +++ .-.+|.+.. ..-+|+| -+|++|+++..|..
T Consensus 482 -EpTA~LD~etE~~i~~~l~~l~~~-----ktv-l~itHrl~~-~~~~D~I-~vld~G~l~~~g~~ 538 (559)
T COG4988 482 -EPTAHLDAETEQIILQALQELAKQ-----KTV-LVITHRLED-AADADRI-VVLDNGRLVEQGTH 538 (559)
T ss_pred -CCccCCCHhHHHHHHHHHHHHHhC-----CeE-EEEEcChHH-HhcCCEE-EEecCCceeccCCH
Confidence 999999999987765544322111 111 111376654 3456777 78899988876643
No 347
>PLN03232 ABC transporter C family member; Provisional
Probab=99.10 E-value=5.5e-11 Score=138.32 Aligned_cols=157 Identities=19% Similarity=0.267 Sum_probs=99.5
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCCCcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~~~~~~i 90 (406)
.-.+++|+++||||++|||||||+++|.|. .+|++|.|.++|.++..+.. .+.||...-..-
T Consensus 1256 sl~I~~GekvaIVG~SGSGKSTL~~lL~rl-----------~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g 1324 (1495)
T PLN03232 1256 SFFVSPSEKVGVVGRTGAGKSSMLNALFRI-----------VELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG 1324 (1495)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc
Confidence 345789999999999999999999999999 78999999999988755431 466766332222
Q ss_pred EEEeeccccccccC------------------------------CCCCcchhhhhHHhhhchhhhhccc-CCCceEeecC
Q 015465 91 EIHDIAGLVRGAHE------------------------------GQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 91 ~lvD~~gl~~~~~~------------------------------~~~l~~~~l~~l~~ad~ll~vvda~-~~~~il~ld~ 139 (406)
++.|+......... +..+..--.++ +.++||. .+|+++++|
T Consensus 1325 TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr-------laLARALLr~~~ILILD- 1396 (1495)
T PLN03232 1325 TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQL-------LSLARALLRRSKILVLD- 1396 (1495)
T ss_pred cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHH-------HHHHHHHHhCCCEEEEE-
Confidence 22222221110000 00000000122 3455555 699999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHH-H-HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDV-E-KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~-~-~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|...+..+..-+ ... . .++ ...+|.++.+.. ||+| -.|++|+++..|+
T Consensus 1397 --EATSaLD~~Te~~Iq~~L-------~~~~~~~Tv-I~IAHRl~ti~~-~DrI-lVL~~G~ivE~Gt 1452 (1495)
T PLN03232 1397 --EATASVDVRTDSLIQRTI-------REEFKSCTM-LVIAHRLNTIID-CDKI-LVLSSGQVLEYDS 1452 (1495)
T ss_pred --CCcccCCHHHHHHHHHHH-------HHHcCCCEE-EEEeCCHHHHHh-CCEE-EEEECCEEEEECC
Confidence 999999998864443322 111 0 011 112388877665 8999 8899999887665
No 348
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.09 E-value=5.9e-11 Score=125.93 Aligned_cols=168 Identities=15% Similarity=0.176 Sum_probs=97.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+..-++++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. ..|.||.....
T Consensus 333 ~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 401 (569)
T PRK10789 333 NVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH-----------FDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF 401 (569)
T ss_pred CeeEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec
Confidence 33456789999999999999999999999999 7899999999998764322 13556553222
Q ss_pred eeEEEeeccccccccCCCCCcc--------hhhhh---------------H-Hhhhchhhhhccc-CCCceEeecCCCCC
Q 015465 89 FLEIHDIAGLVRGAHEGQGLGN--------SFLSH---------------I-RAVDGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~~--------~~l~~---------------l-~~ad~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.-++.|...+.........+.. .+... + ..-.--+.++|++ .+|+++++| ||
T Consensus 402 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlD---Ep 478 (569)
T PRK10789 402 SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD---DA 478 (569)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---Cc
Confidence 2233333322211000000000 00000 0 0000113455665 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|...++.....+..+ .. .+.+ .-.+|....+ ..+|++ ..|++|++...|+
T Consensus 479 ts~LD~~~~~~i~~~l~~~---~~--~~ti-i~itH~~~~~-~~~d~i-~~l~~G~i~~~g~ 532 (569)
T PRK10789 479 LSAVDGRTEHQILHNLRQW---GE--GRTV-IISAHRLSAL-TEASEI-LVMQHGHIAQRGN 532 (569)
T ss_pred cccCCHHHHHHHHHHHHHH---hC--CCEE-EEEecchhHH-HcCCEE-EEEeCCEEEEecC
Confidence 9999999865443322111 00 0111 1113877654 458888 7788898876654
No 349
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.09 E-value=9.1e-11 Score=112.85 Aligned_cols=64 Identities=28% Similarity=0.380 Sum_probs=57.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
....+.|.|+||+|||||++.||+.++++++|||||..-+.|.+...+.+ ++++||||+.+.+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R-----------------~QvIDTPGlLDRP 229 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLR-----------------IQVIDTPGLLDRP 229 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCce-----------------EEEecCCcccCCC
Confidence 34688899999999999999999999999999999999999999887654 8999999998765
Q ss_pred c
Q 015465 103 H 103 (406)
Q Consensus 103 ~ 103 (406)
.
T Consensus 230 l 230 (346)
T COG1084 230 L 230 (346)
T ss_pred h
Confidence 4
No 350
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.07 E-value=1.1e-10 Score=116.33 Aligned_cols=91 Identities=31% Similarity=0.485 Sum_probs=69.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
.+.+|+|+|.+|||||||||+|+|....++++||+|++|..+.+.+++. ..+.++||+|+....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~----------------~~i~l~DT~G~~~~l 251 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG----------------GEVLLTDTVGFIRDL 251 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC----------------ceEEEEecCcccccC
Confidence 3479999999999999999999998766689999999999999988542 148999999986432
Q ss_pred cCC-CCCcchhhhhHHhhhchhhhhccc
Q 015465 103 HEG-QGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~-~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
... ...-...+..++.+|++++|+|++
T Consensus 252 ~~~lie~f~~tle~~~~ADlil~VvD~s 279 (351)
T TIGR03156 252 PHELVAAFRATLEEVREADLLLHVVDAS 279 (351)
T ss_pred CHHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 211 000112344578899999998885
No 351
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.07 E-value=6.3e-11 Score=125.30 Aligned_cols=162 Identities=12% Similarity=0.174 Sum_probs=92.6
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCC--cCceeEEEee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA--VPAFLEIHDI 95 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~--~~~~i~lvD~ 95 (406)
...+.+|+++||+|+||||||||+++|+|. ..|++|.|.+.+. . ...|.||.. .+..+++.|.
T Consensus 342 sl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-----------~~p~~G~i~~~~~-~---~i~~v~q~~~~~~~~~tv~e~ 406 (552)
T TIGR03719 342 SFKLPPGGIVGVIGPNGAGKSTLFRMITGQ-----------EQPDSGTIKIGET-V---KLAYVDQSRDALDPNKTVWEE 406 (552)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCeEEEECCc-e---EEEEEeCCccccCCCCcHHHH
Confidence 345778999999999999999999999999 6789999988432 1 123444431 2222333332
Q ss_pred cccccc---ccCCCCCcchhhhhHHhh---------------hchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhh
Q 015465 96 AGLVRG---AHEGQGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRL 156 (406)
Q Consensus 96 ~gl~~~---~~~~~~l~~~~l~~l~~a---------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~ 156 (406)
..+... ..........++..+... .-.+.++++. .+|+++++| ||++++|+...+...
T Consensus 407 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l~ 483 (552)
T TIGR03719 407 ISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD---EPTNDLDVETLRALE 483 (552)
T ss_pred HHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEe---CCCCCCCHHHHHHHH
Confidence 221100 000000000011111000 0013444554 699999999 999999999865443
Q ss_pred hhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhC-CCcc-ccCCC
Q 015465 157 KDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD-GKDV-RLGDW 206 (406)
Q Consensus 157 ~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~-g~~~-~~~~~ 206 (406)
..+. .+...+.. .+|+...+..+|+++ ..|++ |++. +.+++
T Consensus 484 ~~l~-------~~~~~vii-vsHd~~~~~~~~d~i-~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 484 EALL-------EFAGCAVV-ISHDRWFLDRIATHI-LAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHHH-------HCCCeEEE-EeCCHHHHHHhCCEE-EEEECCCeEEEeCCCH
Confidence 3322 11111111 239999999999998 66775 4554 33544
No 352
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.07 E-value=2.6e-10 Score=100.79 Aligned_cols=169 Identities=16% Similarity=0.255 Sum_probs=103.4
Q ss_pred CcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCC-
Q 015465 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKS- 84 (406)
Q Consensus 13 ~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~- 84 (406)
.-.++.+.+..|+++-+|||||||||||+..++|+ -|-+|+|.+.|.++...+. .|..|+
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm------------~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq 81 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM------------TSGSGSIQFAGQPLEAWSATELARHRAYLSQQQ 81 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCC------------CCCCceEEECCcchhHHhHhHHHHHHHHHhhcc
Confidence 34567888999999999999999999999999998 4789999999998755431 243332
Q ss_pred CcCceeEEEeeccccccccCC----------CCCcc-----------hhhhhHHhhhchhhhhc-ccCCCceEeecCCCC
Q 015465 85 AVPAFLEIHDIAGLVRGAHEG----------QGLGN-----------SFLSHIRAVDGIFHVLR-AFEDPDIIHVDDSVD 142 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~~~~~----------~~l~~-----------~~l~~l~~ad~ll~vvd-a~~~~~il~ld~~~d 142 (406)
..++.+.++....+....... ..+.. --++++|.+-..+.|-. +-.+..++++| |
T Consensus 82 ~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD---E 158 (248)
T COG4138 82 TPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD---E 158 (248)
T ss_pred CCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEec---C
Confidence 333333333332222111100 00000 01244555555555432 22344578899 8
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHH---HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEK---SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~---~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|.+.+|+..+... .+.+..+-. .+..+ .|++....+-.+++ -.|.+|+.+..|.
T Consensus 159 P~~~LDvAQ~~aL-------drll~~~c~~G~~vims-~HDLNhTLrhA~~~-wLL~rG~l~~~G~ 215 (248)
T COG4138 159 PMNSLDVAQQSAL-------DRLLSALCQQGLAIVMS-SHDLNHTLRHAHRA-WLLKRGKLLASGR 215 (248)
T ss_pred CCcchhHHHHHHH-------HHHHHHHHhCCcEEEEe-ccchhhHHHHHHHH-HHHhcCeEEeecc
Confidence 9988988764222 222222211 11112 28888888888888 8889999988764
No 353
>PLN03130 ABC transporter C family member; Provisional
Probab=99.07 E-value=9.5e-11 Score=136.81 Aligned_cols=157 Identities=20% Similarity=0.260 Sum_probs=99.7
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~i 90 (406)
.-.+++|+++||||++|||||||+++|.|. .+|++|.|.++|.++..+. ..+.||...-..-
T Consensus 1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~rl-----------~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G 1327 (1622)
T PLN03130 1259 SFEISPSEKVGIVGRTGAGKSSMLNALFRI-----------VELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG 1327 (1622)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCc-----------CCCCCceEEECCEecccCCHHHHHhccEEECCCCccccc
Confidence 346789999999999999999999999999 7899999999998865432 1466766433222
Q ss_pred EEEeeccccccccC---------------------C---------CCCcchhhhhHHhhhchhhhhccc-CCCceEeecC
Q 015465 91 EIHDIAGLVRGAHE---------------------G---------QGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 91 ~lvD~~gl~~~~~~---------------------~---------~~l~~~~l~~l~~ad~ll~vvda~-~~~~il~ld~ 139 (406)
++.|+......... + ..+..--.+. +.++||. .+|+++++|
T Consensus 1328 TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQr-------laLARALLr~p~ILILD- 1399 (1622)
T PLN03130 1328 TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQL-------LSLARALLRRSKILVLD- 1399 (1622)
T ss_pred cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHH-------HHHHHHHHcCCCEEEEE-
Confidence 33322221110000 0 0000000122 3455555 699999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|...+..+..-+ .+.. .++ ...+|.+..+.. ||+| .+|++|+++..|+
T Consensus 1400 --EATSaLD~~Te~~Iq~~I-------~~~~~~~Tv-I~IAHRL~tI~~-~DrI-lVLd~G~IvE~Gt 1455 (1622)
T PLN03130 1400 --EATAAVDVRTDALIQKTI-------REEFKSCTM-LIIAHRLNTIID-CDRI-LVLDAGRVVEFDT 1455 (1622)
T ss_pred --CCCCCCCHHHHHHHHHHH-------HHHCCCCEE-EEEeCChHHHHh-CCEE-EEEECCEEEEeCC
Confidence 999999998865443322 1110 011 112388887765 8999 8899999887664
No 354
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.07 E-value=1e-10 Score=120.47 Aligned_cols=162 Identities=24% Similarity=0.341 Sum_probs=98.6
Q ss_pred cCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch-------hhhh---h-h-cc
Q 015465 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF-------EWLC---Q-L-FK 81 (406)
Q Consensus 14 ~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~-------~~l~---~-~-~~ 81 (406)
-....-.+.+|+++||||.+|||||||.++|+|+ ..|++|.+.+.|.++ ..+. + . ..
T Consensus 307 v~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL-----------~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQd 375 (539)
T COG1123 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGL-----------LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQD 375 (539)
T ss_pred eeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEEeCcccccccchhhhhhhheEEEEeC
Confidence 4445556789999999999999999999999999 789999999988651 0100 0 0 11
Q ss_pred CCCCcCceeEEEeec--------------------------cccc-----cccCCCCCcchhhhhHHhhhchhhhhccc-
Q 015465 82 PKSAVPAFLEIHDIA--------------------------GLVR-----GAHEGQGLGNSFLSHIRAVDGIFHVLRAF- 129 (406)
Q Consensus 82 p~~~~~~~i~lvD~~--------------------------gl~~-----~~~~~~~l~~~~l~~l~~ad~ll~vvda~- 129 (406)
|....+...++.+.. |+.. .+++ .+-|.+ ++ +.+++|.
T Consensus 376 p~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~e-lSGGQr--QR-------vaIARALa 445 (539)
T COG1123 376 PYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE-LSGGQR--QR-------VAIARALA 445 (539)
T ss_pred cccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchh-cCcchh--HH-------HHHHHHHh
Confidence 211222222222211 1110 0000 001111 22 2344554
Q ss_pred CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 130 EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 130 ~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
.+|+++++| ||++.+|+..+.-++.-+..+.+. +.-.. .-.+|++..+..+|||| .++..|+++..|
T Consensus 446 ~~P~lli~D---Ep~SaLDvsvqa~VlnLl~~lq~e---~g~t~-lfISHDl~vV~~i~drv-~vm~~G~iVE~G 512 (539)
T COG1123 446 LEPKLLILD---EPVSALDVSVQAQVLNLLKDLQEE---LGLTY-LFISHDLAVVRYIADRV-AVMYDGRIVEEG 512 (539)
T ss_pred cCCCEEEec---CCccccCHHHHHHHHHHHHHHHHH---hCCEE-EEEeCCHHHHHhhCceE-EEEECCeEEEeC
Confidence 599999999 999999998764443332222221 11100 01139999999999999 999999998777
No 355
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.06 E-value=1.6e-10 Score=107.61 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=41.7
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
.+....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~ 65 (218)
T cd03290 18 SNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE-----------MQTLEGKVHWSNKNE 65 (218)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCeEEECCccc
Confidence 344556889999999999999999999999999 678999999988654
No 356
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.05 E-value=4.9e-11 Score=128.11 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=38.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g 70 (406)
+....+.+|+++||+|+||||||||+++|+|. ..|++|.|.+++
T Consensus 21 ~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~-----------~~p~~G~I~~~~ 64 (635)
T PRK11147 21 NAELHIEDNERVCLVGRNGAGKSTLMKILNGE-----------VLLDDGRIIYEQ 64 (635)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCeEEEeCC
Confidence 34456889999999999999999999999999 678899988865
No 357
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.05 E-value=1.2e-09 Score=109.62 Aligned_cols=90 Identities=24% Similarity=0.308 Sum_probs=69.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
.+.+++|||.||+|||||+|+|+|....+ ++.|+||+++....+.++|+. +.++||+|+.+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~-----------------~~liDTAGiRrk 239 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK-----------------YVLIDTAGIRRK 239 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE-----------------EEEEECCCCCcc
Confidence 45799999999999999999999997755 999999999999999998874 799999999765
Q ss_pred ccCCCCC----cchhhhhHHhhhchhhhhccc
Q 015465 102 AHEGQGL----GNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 102 ~~~~~~l----~~~~l~~l~~ad~ll~vvda~ 129 (406)
..-..+. ..+.+..+..+|.++.|+||.
T Consensus 240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~ 271 (444)
T COG1160 240 GKITESVEKYSVARTLKAIERADVVLLVIDAT 271 (444)
T ss_pred cccccceEEEeehhhHhHHhhcCEEEEEEECC
Confidence 4322211 123345566777777766663
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=99.04 E-value=2e-10 Score=132.68 Aligned_cols=173 Identities=14% Similarity=0.175 Sum_probs=103.4
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCc---eeEEEcCCcchhhhh----hhccCCC-Cc
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWLC----QLFKPKS-AV 86 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~---~G~i~v~g~~~~~l~----~~~~p~~-~~ 86 (406)
.+..+.+++|+.++|+||||||||||+++|+|. .+|+ +|.|.++|.++.... ..|.+|. ..
T Consensus 182 ~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~-----------l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~ 250 (1470)
T PLN03140 182 KDASGIIKPSRMTLLLGPPSSGKTTLLLALAGK-----------LDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVH 250 (1470)
T ss_pred cCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCC-----------CCCCCcceeEEEECCEechhhcccceeEEecccccC
Confidence 345677889999999999999999999999999 5566 899999998764321 2466665 33
Q ss_pred CceeEEEeeccccccccC-CC------CC--c------------------------------chhhhhHHhh---hc---
Q 015465 87 PAFLEIHDIAGLVRGAHE-GQ------GL--G------------------------------NSFLSHIRAV---DG--- 121 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~-~~------~l--~------------------------------~~~l~~l~~a---d~--- 121 (406)
...+++.|+..+...... +. .. . +.+++.+... |-
T Consensus 251 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg 330 (1470)
T PLN03140 251 VGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVG 330 (1470)
T ss_pred CCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeC
Confidence 444566665544211000 00 00 0 0011111100 00
Q ss_pred -------------hhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccch-HHHHH
Q 015465 122 -------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQL-KIEHE 186 (406)
Q Consensus 122 -------------ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~-~~v~~ 186 (406)
-+.+.++. .+|+++++| ||++++|..........+..+.+ .....+..+ .|+. .++.+
T Consensus 331 ~~~~rglSGGerkRVsia~aL~~~p~vlllD---EPTsGLDs~t~~~i~~~Lr~la~---~~g~Tviis-~Hqp~~~i~~ 403 (1470)
T PLN03140 331 DEMIRGISGGQKKRVTTGEMIVGPTKTLFMD---EISTGLDSSTTYQIVKCLQQIVH---LTEATVLMS-LLQPAPETFD 403 (1470)
T ss_pred CccccCCCcccceeeeehhhhcCCCcEEEEe---CCCcCccHHHHHHHHHHHHHHHH---hcCCEEEEE-ecCCCHHHHH
Confidence 01222333 578899999 99999999986443332211110 001111111 2764 68889
Q ss_pred HHHHHHHHhhCCCccccCCC
Q 015465 187 LCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 187 l~~~i~~~L~~g~~~~~~~~ 206 (406)
++|++ .+|.+|++++.|+.
T Consensus 404 lfD~v-ilL~~G~ivy~G~~ 422 (1470)
T PLN03140 404 LFDDI-ILLSEGQIVYQGPR 422 (1470)
T ss_pred HhheE-EEeeCceEEEeCCH
Confidence 99999 89999999888754
No 359
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.04 E-value=1.9e-10 Score=132.84 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=101.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-hh--hhccCCC-CcCceeE
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-LC--QLFKPKS-AVPAFLE 91 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-l~--~~~~p~~-~~~~~i~ 91 (406)
+..+.+++|+.+||+||||||||||+++|+|... .-.|++|.|.++|.++.. +. ..|.+|. .....++
T Consensus 781 ~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~--------~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~T 852 (1394)
T TIGR00956 781 NVDGWVKPGTLTALMGASGAGKTTLLNVLAERVT--------TGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTST 852 (1394)
T ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC--------CCCcceeEEEECCEECChhhhcceeeecccccCCCCCC
Confidence 3456788999999999999999999999999821 012678999999977532 11 2466665 2334455
Q ss_pred EEeeccccccccCCCCC--------cchhhhhHHh---hhc---------------hhhhhccc-CCCc-eEeecCCCCC
Q 015465 92 IHDIAGLVRGAHEGQGL--------GNSFLSHIRA---VDG---------------IFHVLRAF-EDPD-IIHVDDSVDP 143 (406)
Q Consensus 92 lvD~~gl~~~~~~~~~l--------~~~~l~~l~~---ad~---------------ll~vvda~-~~~~-il~ld~~~dP 143 (406)
+.++..+.......... ....++.+.. .|. .+.+.++. .+|+ ++++| ||
T Consensus 853 v~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLD---EP 929 (1394)
T TIGR00956 853 VRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLD---EP 929 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEc---CC
Confidence 55544332110000000 0011111100 011 12233343 5896 89999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHH-HHHHHHHHHHHhhCC-CccccCCCCh
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKI-EHELCQRVKAWLQDG-KDVRLGDWKA 208 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~-v~~l~~~i~~~L~~g-~~~~~~~~t~ 208 (406)
++++|......+..-+..+ .+-+..+ .-.+|+... +...+|++ .+|.+| ++++.|+..+
T Consensus 930 TsgLD~~~~~~i~~~L~~l----a~~g~tv-I~t~H~~~~~~~~~~D~v-l~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 930 TSGLDSQTAWSICKLMRKL----ADHGQAI-LCTIHQPSAILFEEFDRL-LLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred CCCCCHHHHHHHHHHHHHH----HHcCCEE-EEEecCCCHHHHHhcCEE-EEEcCCCEEEEECCccc
Confidence 9999998864443322211 1101111 111388875 45779998 788887 8888877654
No 360
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.04 E-value=9.9e-11 Score=105.10 Aligned_cols=162 Identities=15% Similarity=0.235 Sum_probs=95.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh--hhccCCC-CcCceeEE
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKS-AVPAFLEI 92 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~p~~-~~~~~i~l 92 (406)
...-.+..|+.+.++||+|||||||+|.++|. +.|+.|+|.++|+++.--. ....-|+ .....+++
T Consensus 23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf-----------~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~ 91 (259)
T COG4525 23 DVSLTIASGELVVVLGPSGCGKTTLLNLIAGF-----------VTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNV 91 (259)
T ss_pred ccceeecCCCEEEEEcCCCccHHHHHHHHhcC-----------cCcccceEEECCEeccCCCccceeEeccCccchhhHH
Confidence 34445789999999999999999999999999 8899999999998753321 1222222 34445677
Q ss_pred Eeecccccccc---CC--CCCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCchHHHHHH
Q 015465 93 HDIAGLVRGAH---EG--QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (406)
Q Consensus 93 vD~~gl~~~~~---~~--~~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~ 152 (406)
+|+..+.-... +. .....+++..+...++ -+-+.+|. -+|+++++| ||+..+|....
T Consensus 92 ~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD---EPfgAlDa~tR 168 (259)
T COG4525 92 IDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD---EPFGALDALTR 168 (259)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeec---CchhhHHHHHH
Confidence 77665542111 10 0011111111111110 13355555 589999999 99999999986
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhh
Q 015465 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ 196 (406)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~ 196 (406)
|-...- +-..|..-.+.+ .-.+|+.++..-+.+++ .+|.
T Consensus 169 e~mQel---Lldlw~~tgk~~-lliTH~ieEAlflatrL-vvls 207 (259)
T COG4525 169 EQMQEL---LLDLWQETGKQV-LLITHDIEEALFLATRL-VVLS 207 (259)
T ss_pred HHHHHH---HHHHHHHhCCeE-EEEeccHHHHHhhhhee-EEec
Confidence 543322 111121111111 11248888877777877 5553
No 361
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.03 E-value=2.9e-10 Score=119.63 Aligned_cols=126 Identities=20% Similarity=0.307 Sum_probs=78.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+..-++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. ..|.||...-.
T Consensus 340 ~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~-----------~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf 408 (529)
T TIGR02857 340 PVSFTVPPGERVALVGPSGAGKSTLLNLLLGF-----------VDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLF 408 (529)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCccc
Confidence 34456889999999999999999999999999 7899999999998765432 24666653222
Q ss_pred eeEEEeeccccccccCCCCC--------cchhhhhH----------------Hhhhchhhhhccc-CCCceEeecCCCCC
Q 015465 89 FLEIHDIAGLVRGAHEGQGL--------GNSFLSHI----------------RAVDGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l--------~~~~l~~l----------------~~ad~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.-++.|...+.........+ ...+.+.+ ..-.--+.++|++ .+|+++++| ||
T Consensus 409 ~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililD---E~ 485 (529)
T TIGR02857 409 AGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD---EP 485 (529)
T ss_pred CcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEe---Cc
Confidence 23344433322111000000 00000000 0000114566666 799999999 99
Q ss_pred CchHHHHHHHHh
Q 015465 144 VRDLEVISAELR 155 (406)
Q Consensus 144 ~~~ld~i~~el~ 155 (406)
++.+|..+++.+
T Consensus 486 ts~lD~~~~~~i 497 (529)
T TIGR02857 486 TAHLDAETEALV 497 (529)
T ss_pred ccccCHHHHHHH
Confidence 999999986443
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=99.03 E-value=7.1e-11 Score=127.86 Aligned_cols=161 Identities=14% Similarity=0.149 Sum_probs=91.0
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecc
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~g 97 (406)
...+.+|+++||+|+||||||||+++|+|. ..|++|.|.+.+.. ...|.+|.... .+.+.+..-
T Consensus 529 sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl-----------l~p~~G~I~~~~~~----~igyv~Q~~~~-~l~~~~~~~ 592 (718)
T PLN03073 529 NFGIDLDSRIAMVGPNGIGKSTILKLISGE-----------LQPSSGTVFRSAKV----RMAVFSQHHVD-GLDLSSNPL 592 (718)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCceEEECCce----eEEEEeccccc-cCCcchhHH
Confidence 345779999999999999999999999999 77899998875421 12233433211 111111100
Q ss_pred --ccc-cccCCCCCcchhhhhHHh---------------hhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhh
Q 015465 98 --LVR-GAHEGQGLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKD 158 (406)
Q Consensus 98 --l~~-~~~~~~~l~~~~l~~l~~---------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~d 158 (406)
+.. ...........++..+.. -...+.+++++ .+|+++++| ||++++|....+...
T Consensus 593 ~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLD---EPT~~LD~~s~~~l~-- 667 (718)
T PLN03073 593 LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLD---EPSNHLDLDAVEALI-- 667 (718)
T ss_pred HHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHHH--
Confidence 000 000000000000110000 00013344554 699999999 999999998754322
Q ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc-ccCCC
Q 015465 159 IEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDW 206 (406)
Q Consensus 159 i~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~-~~~~~ 206 (406)
+.+..+...+ .-.+|+...+..+|+++ ..|.+|++. +.|++
T Consensus 668 -----~~L~~~~gtv-IivSHd~~~i~~~~drv-~~l~~G~i~~~~g~~ 709 (718)
T PLN03073 668 -----QGLVLFQGGV-LMVSHDEHLISGSVDEL-WVVSEGKVTPFHGTF 709 (718)
T ss_pred -----HHHHHcCCEE-EEEECCHHHHHHhCCEE-EEEECCEEEEeCCCH
Confidence 1122111111 11239999999999998 778889876 44543
No 363
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.03 E-value=1.6e-10 Score=120.41 Aligned_cols=168 Identities=16% Similarity=0.252 Sum_probs=90.9
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCC-ceeEEEcCCcchhh------h--hhhccCCCC-c
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDERFEW------L--CQLFKPKSA-V 86 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p-~~G~i~v~g~~~~~------l--~~~~~p~~~-~ 86 (406)
....+.+|+++||+||||||||||+++|+|. ..+ ++|.|.++|.++.. . ...|.+|.. .
T Consensus 279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~-----------~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 347 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITGD-----------HPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHL 347 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHh
Confidence 3445779999999999999999999999997 443 58999888754310 1 123444431 1
Q ss_pred Cce--eEEEeec--------cccccccC-CCCCcchhhhhHHhhh---------------chhhhhccc-CCCceEeecC
Q 015465 87 PAF--LEIHDIA--------GLVRGAHE-GQGLGNSFLSHIRAVD---------------GIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 87 ~~~--i~lvD~~--------gl~~~~~~-~~~l~~~~l~~l~~ad---------------~ll~vvda~-~~~~il~ld~ 139 (406)
... ..+.+.. ++...... .......+++.+...+ -.+.++++. .+|+++++|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD- 426 (490)
T PRK10938 348 DYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILD- 426 (490)
T ss_pred hcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEc-
Confidence 000 1111110 00000000 0000001111111100 013455555 699999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHH-HHHHHHHHhhCCCcccc
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHE-LCQRVKAWLQDGKDVRL 203 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~-l~~~i~~~L~~g~~~~~ 203 (406)
||++++|+...+.....+..+.+ .-...+.. .+|+...+.. +|+++ .+|.+|+++..
T Consensus 427 --EPt~gLD~~~~~~l~~~L~~l~~---~~~~tvii-vsHd~~~~~~~~~d~v-~~l~~G~i~~~ 484 (490)
T PRK10938 427 --EPLQGLDPLNRQLVRRFVDVLIS---EGETQLLF-VSHHAEDAPACITHRL-EFVPDGDIYRY 484 (490)
T ss_pred --CccccCCHHHHHHHHHHHHHHHh---cCCcEEEE-EecchhhhhhhhheeE-EEecCCceEEe
Confidence 99999999986444333221111 00000111 1399998887 57888 88899987654
No 364
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.03 E-value=2e-10 Score=103.65 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=78.4
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh--hhhhccCCCCcCceeEE
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LCQLFKPKSAVPAFLEI 92 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~--l~~~~~p~~~~~~~i~l 92 (406)
.+..-++.+|++++|+||||||||||++++.+ ++|.+.+.+..-.. ....|.++ ..+
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---------------~~G~v~~~~~~~~~~~~~~~~~~q------~~~ 70 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---------------ASGKARLISFLPKFSRNKLIFIDQ------LQF 70 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---------------cCCcEEECCcccccccccEEEEhH------HHH
Confidence 44556789999999999999999999999863 24555544331000 00011111 112
Q ss_pred Eeecccccc-ccC-CCCCcchhhhhHHhhhchhhhhcccCC--CceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHH
Q 015465 93 HDIAGLVRG-AHE-GQGLGNSFLSHIRAVDGIFHVLRAFED--PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIED 168 (406)
Q Consensus 93 vD~~gl~~~-~~~-~~~l~~~~l~~l~~ad~ll~vvda~~~--~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~ 168 (406)
++..++... ... ...+..-..+++..+.+++ .+ |+++++| ||++.+|....+.....+..+ ..
T Consensus 71 l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~------~~~~p~llLlD---EPt~~LD~~~~~~l~~~l~~~----~~ 137 (176)
T cd03238 71 LIDVGLGYLTLGQKLSTLSGGELQRVKLASELF------SEPPGTLFILD---EPSTGLHQQDINQLLEVIKGL----ID 137 (176)
T ss_pred HHHcCCCccccCCCcCcCCHHHHHHHHHHHHHh------hCCCCCEEEEe---CCcccCCHHHHHHHHHHHHHH----Hh
Confidence 233333211 110 0111111123333343333 37 9999999 999999999865443322111 00
Q ss_pred HHHHhhhccccchHHHHHHHHHHHHHhhCCCc
Q 015465 169 VEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (406)
Q Consensus 169 ~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~ 200 (406)
....+ .-.+|+...+ ..|+++ ..|.+|+.
T Consensus 138 ~g~tv-IivSH~~~~~-~~~d~i-~~l~~g~~ 166 (176)
T cd03238 138 LGNTV-ILIEHNLDVL-SSADWI-IDFGPGSG 166 (176)
T ss_pred CCCEE-EEEeCCHHHH-HhCCEE-EEECCCCC
Confidence 01111 0113888765 568887 66666654
No 365
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.02 E-value=3e-10 Score=87.51 Aligned_cols=47 Identities=23% Similarity=0.230 Sum_probs=43.4
Q ss_pred cEEEeecCCC----CeeeEEecCCCCcchhcccchhhhhhccEEEEEeccc
Q 015465 304 LIYFFTAGPD----EVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFD 350 (406)
Q Consensus 304 li~~fT~g~~----e~raw~i~~gsta~~aAg~IHsD~~kgFi~Aev~~~~ 350 (406)
||++||+.+. ..++.++|+|+|+.|+|.+||+|+.+.|++|.||+-+
T Consensus 1 lirvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s 51 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSS 51 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccC
Confidence 6899999885 4589999999999999999999999999999999866
No 366
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.02 E-value=1.6e-09 Score=117.92 Aligned_cols=60 Identities=35% Similarity=0.520 Sum_probs=53.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
.+++++|.||||||||+|.|+|.+..++++|++|.++..|.+..++. .+.++|+||....
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~-----------------~i~lvDtPG~ysl 63 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDH-----------------QVTLVDLPGTYSL 63 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCce-----------------EEEEEECCCcccc
Confidence 57999999999999999999999888899999999999999877654 3899999998753
No 367
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.02 E-value=1.1e-09 Score=116.91 Aligned_cols=190 Identities=17% Similarity=0.175 Sum_probs=112.9
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh--hh--hhccCCCC-cCce
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LC--QLFKPKSA-VPAF 89 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~--l~--~~~~p~~~-~~~~ 89 (406)
.+..|.+++|+..||+||.|||||||+|+|+|.... --..+|.|.++|++... .. ..|.+|.. ....
T Consensus 47 ~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~--------~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~ 118 (613)
T KOG0061|consen 47 KGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNG--------GLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPT 118 (613)
T ss_pred eCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccC--------CCcceEEEEECCccCchhhhhheeEEEccccccccc
Confidence 456678889999999999999999999999998421 02478999999954321 11 24555552 2444
Q ss_pred eEEEeeccccccccCC------------------------------------CCCcchhhhhHHhhhchhhhhcccCCCc
Q 015465 90 LEIHDIAGLVRGAHEG------------------------------------QGLGNSFLSHIRAVDGIFHVLRAFEDPD 133 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~------------------------------------~~l~~~~l~~l~~ad~ll~vvda~~~~~ 133 (406)
+++-++.-+....... -+.|++ +++..+--++ .+|.
T Consensus 119 LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGEr--kRvsia~Ell------~~P~ 190 (613)
T KOG0061|consen 119 LTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGER--KRVSIALELL------TDPS 190 (613)
T ss_pred ccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchh--hHHHHHHHHH------cCCC
Confidence 5555544332111110 001111 2222222222 4899
Q ss_pred eEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccch-HHHHHHHHHHHHHhhCCCccccCCCChhHHH
Q 015465 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQL-KIEHELCQRVKAWLQDGKDVRLGDWKAADIE 212 (406)
Q Consensus 134 il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~-~~v~~l~~~i~~~L~~g~~~~~~~~t~~e~e 212 (406)
++++| ||++++|.........-+ .+ +.+-.+.+..+ .|+. .++-.+.|++ .+|.+|+.++.|+.. +
T Consensus 191 iLflD---EPTSGLDS~sA~~vv~~L---k~-lA~~grtVi~t-IHQPss~lf~lFD~l-~lLs~G~~vy~G~~~----~ 257 (613)
T KOG0061|consen 191 ILFLD---EPTSGLDSFSALQVVQLL---KR-LARSGRTVICT-IHQPSSELFELFDKL-LLLSEGEVVYSGSPR----E 257 (613)
T ss_pred EEEec---CCCCCcchhhHHHHHHHH---HH-HHhCCCEEEEE-EeCCcHHHHHHHhHh-hhhcCCcEEEecCHH----H
Confidence 99999 999999998853332221 11 11111111111 1554 5788999999 999999999998764 2
Q ss_pred HHHHhhhhccccEEeeeccchh
Q 015465 213 ILNTFQLLTAKPVVYLVNMNEK 234 (406)
Q Consensus 213 ~i~~~~~~~~kpi~~~~N~~~~ 234 (406)
. ..|+....-|++--.|.+|-
T Consensus 258 ~-~~ff~~~G~~~P~~~Npadf 278 (613)
T KOG0061|consen 258 L-LEFFSSLGFPCPELENPADF 278 (613)
T ss_pred H-HHHHHhCCCCCCCcCChHHH
Confidence 2 23444455666666676653
No 368
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.01 E-value=5.7e-10 Score=98.00 Aligned_cols=50 Identities=28% Similarity=0.315 Sum_probs=44.5
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL 76 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l 76 (406)
+....+.+|+.++|.||+|||||||+++++.+ +.|++|.+.+.|+++..+
T Consensus 21 ~isl~v~~Ge~iaitGPSG~GKStllk~va~L-----------isp~~G~l~f~Ge~vs~~ 70 (223)
T COG4619 21 NISLSVRAGEFIAITGPSGCGKSTLLKIVASL-----------ISPTSGTLLFEGEDVSTL 70 (223)
T ss_pred ceeeeecCCceEEEeCCCCccHHHHHHHHHhc-----------cCCCCceEEEcCcccccc
Confidence 44556889999999999999999999999999 889999999999987544
No 369
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.01 E-value=2.3e-10 Score=133.35 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=98.0
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCCCcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~~~~~~i 90 (406)
.-.+++|+++||||++|||||||+++|.|. .+|++|.|.++|.++..+.. .+.||...-..-
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl-----------~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g 1374 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRI-----------NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG 1374 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------ccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc
Confidence 345789999999999999999999999999 78999999999988755431 466765332222
Q ss_pred EEEeecccccccc---------------------CC---------CCCcchhhhhHHhhhchhhhhccc-CCCceEeecC
Q 015465 91 EIHDIAGLVRGAH---------------------EG---------QGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 91 ~lvD~~gl~~~~~---------------------~~---------~~l~~~~l~~l~~ad~ll~vvda~-~~~~il~ld~ 139 (406)
++.|+........ .+ ..+..--.+. +.++||. .+++++++|
T Consensus 1375 TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr-------l~LARALLr~~~ILiLD- 1446 (1522)
T TIGR00957 1375 SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQL-------VCLARALLRKTKILVLD- 1446 (1522)
T ss_pred cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHH-------HHHHHHHHcCCCEEEEE-
Confidence 2222221000000 00 0000000122 3445555 699999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
||++.+|...+..+...+. +... ..++ ...+|.+..+.. +|+| -.|++|+++..|+.
T Consensus 1447 --EaTSalD~~Te~~Iq~~l~---~~~~--~~Tv-I~IAHRl~ti~~-~DrI-lVld~G~IvE~G~~ 1503 (1522)
T TIGR00957 1447 --EATAAVDLETDNLIQSTIR---TQFE--DCTV-LTIAHRLNTIMD-YTRV-IVLDKGEVAEFGAP 1503 (1522)
T ss_pred --CCcccCCHHHHHHHHHHHH---HHcC--CCEE-EEEecCHHHHHh-CCEE-EEEECCEEEEECCH
Confidence 9999999988644433221 1000 0010 112388866554 7998 88899998876653
No 370
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.00 E-value=1.9e-10 Score=121.57 Aligned_cols=159 Identities=14% Similarity=0.048 Sum_probs=92.2
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----h--hccCCCCcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~--~~~p~~~~~~~i 90 (406)
.-.+++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. . .|.||......-
T Consensus 343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ 411 (547)
T PRK10522 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGL-----------YQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ 411 (547)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH
Confidence 345789999999999999999999999999 7899999999998754321 1 355554321111
Q ss_pred EEEee---------------ccccccccC------CCCCcchhhhhHHhhhchhhhhccc-CCCceEeecCCCCCCchHH
Q 015465 91 EIHDI---------------AGLVRGAHE------GQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (406)
Q Consensus 91 ~lvD~---------------~gl~~~~~~------~~~l~~~~l~~l~~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld 148 (406)
++.+. .++...... +..+..--.++ +.++|++ .+|+++++| ||++.+|
T Consensus 412 ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qR-------l~lARal~~~~~ililD---E~ts~LD 481 (547)
T PRK10522 412 LLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKR-------LALLLALAEERDILLLD---EWAADQD 481 (547)
T ss_pred hhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHH-------HHHHHHHhcCCCEEEEE---CCCCCCC
Confidence 22221 111100000 00010000122 3355555 699999999 9999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcccc
Q 015465 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (406)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~ 203 (406)
..++......+ .+....-...+ .-.+|.... ...+|++ ..|++|++...
T Consensus 482 ~~~~~~i~~~l---~~~~~~~~~tv-i~itH~~~~-~~~~d~i-~~l~~G~i~e~ 530 (547)
T PRK10522 482 PHFRREFYQVL---LPLLQEMGKTI-FAISHDDHY-FIHADRL-LEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHHH---HHHHHhCCCEE-EEEEechHH-HHhCCEE-EEEECCEEEEe
Confidence 98864332221 11110000111 111387754 4578888 77888887643
No 371
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.00 E-value=1.5e-10 Score=99.47 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=41.9
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~ 75 (406)
...+.+|++++|+|+||||||||+++|+|. ..|++|.|.+++.++..
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g~-----------~~~~~G~i~~~~~~~~~ 51 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLLKALAGL-----------LPPDSGSILINGKDISD 51 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHHHHHTTS-----------SHESEEEEEETTEEGTT
T ss_pred EEEEcCCCEEEEEccCCCccccceeeeccc-----------ccccccccccccccccc
Confidence 345789999999999999999999999999 77899999999877644
No 372
>PTZ00243 ABC transporter; Provisional
Probab=98.99 E-value=2.5e-10 Score=133.05 Aligned_cols=166 Identities=16% Similarity=0.211 Sum_probs=98.4
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCceeE
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAFLE 91 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~i~ 91 (406)
-.+++|+++||||++|||||||+++|.|. .+|++|.|.++|.++..+. ..+.||...-+.-+
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl-----------~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gT 1399 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRM-----------VEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGT 1399 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccccc
Confidence 45779999999999999999999999999 7899999999998875432 14677764332223
Q ss_pred EEeeccccccccCC-------------------CCCcchhh---hhH-Hhhhchhhhhccc-CC-CceEeecCCCCCCch
Q 015465 92 IHDIAGLVRGAHEG-------------------QGLGNSFL---SHI-RAVDGIFHVLRAF-ED-PDIIHVDDSVDPVRD 146 (406)
Q Consensus 92 lvD~~gl~~~~~~~-------------------~~l~~~~l---~~l-~~ad~ll~vvda~-~~-~~il~ld~~~dP~~~ 146 (406)
+.|+.......... .++....- ..+ ..-.-.+.++||+ .+ +.+++|| ||++.
T Consensus 1400 IreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLD---EATSa 1476 (1560)
T PTZ00243 1400 VRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMD---EATAN 1476 (1560)
T ss_pred HHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEe---CCCcc
Confidence 32222111000000 00000000 000 0001124556666 44 7999999 99999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
+|...+..+...+. +... ..++ ...+|.+..+ .-||+| -+|++|+++..|+.
T Consensus 1477 LD~~te~~Iq~~L~---~~~~--~~Tv-I~IAHRl~ti-~~~DrI-lVLd~G~VvE~Gt~ 1528 (1560)
T PTZ00243 1477 IDPALDRQIQATVM---SAFS--AYTV-ITIAHRLHTV-AQYDKI-IVMDHGAVAEMGSP 1528 (1560)
T ss_pred CCHHHHHHHHHHHH---HHCC--CCEE-EEEeccHHHH-HhCCEE-EEEECCEEEEECCH
Confidence 99988654433221 1000 0010 1123888665 458999 88899998876653
No 373
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.99 E-value=1e-10 Score=121.83 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=80.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCC--cCceeEEE
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA--VPAFLEIH 93 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~--~~~~i~lv 93 (406)
++...+.+|.+||||||||+||||||++|+|. ..|.+|.|.+... +...|.+|.. .....+++
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~-----------~~~~~G~v~~g~~----v~igyf~Q~~~~l~~~~t~~ 404 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE-----------LGPLSGTVKVGET----VKIGYFDQHRDELDPDKTVL 404 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHHHHHhhh-----------cccCCceEEeCCc----eEEEEEEehhhhcCccCcHH
Confidence 44556789999999999999999999999998 6778888876432 1112333221 00111122
Q ss_pred eecccccccc-CC--------CCC-cchhhhhHHh----hhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhh
Q 015465 94 DIAGLVRGAH-EG--------QGL-GNSFLSHIRA----VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKD 158 (406)
Q Consensus 94 D~~gl~~~~~-~~--------~~l-~~~~l~~l~~----ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~d 158 (406)
|...-..... .. ..+ +......++. -.+-+.+.... ..|++++|| ||++++|+-..+
T Consensus 405 d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLD---EPTNhLDi~s~~----- 476 (530)
T COG0488 405 EELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLD---EPTNHLDIESLE----- 476 (530)
T ss_pred HHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEc---CCCccCCHHHHH-----
Confidence 2111000000 00 000 0000000000 00012222222 589999999 999999988732
Q ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHH
Q 015465 159 IEFMERRIEDVEKSMKRSNDKQLKIEHELCQRV 191 (406)
Q Consensus 159 i~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i 191 (406)
.++..+..+...+.. .+|+...+..+++++
T Consensus 477 --aLe~aL~~f~Gtvl~-VSHDr~Fl~~va~~i 506 (530)
T COG0488 477 --ALEEALLDFEGTVLL-VSHDRYFLDRVATRI 506 (530)
T ss_pred --HHHHHHHhCCCeEEE-EeCCHHHHHhhcceE
Confidence 244444333222211 139999999999988
No 374
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.98 E-value=1.3e-09 Score=103.68 Aligned_cols=89 Identities=24% Similarity=0.225 Sum_probs=70.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
-..+|+||+||+|||||.|.+.|..+. ++..+.||+.-..|.+.-+. .++.|+||||+....
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-----------------TQlvf~DTPGlvs~~ 134 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-----------------TQLVFYDTPGLVSKK 134 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-----------------eEEEEecCCcccccc
Confidence 468999999999999999999999884 48999999999999988764 468999999998543
Q ss_pred c-CCCCCcc----hhhhhHHhhhchhhhhccc
Q 015465 103 H-EGQGLGN----SFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~-~~~~l~~----~~l~~l~~ad~ll~vvda~ 129 (406)
. +...+.. .....+..||.++.|+|++
T Consensus 135 ~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das 166 (379)
T KOG1423|consen 135 MHRRHHLMMSVLQNPRDAAQNADCVVVVVDAS 166 (379)
T ss_pred hhhhHHHHHHhhhCHHHHHhhCCEEEEEEecc
Confidence 2 2221222 2345678899999999997
No 375
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.98 E-value=1.6e-10 Score=124.32 Aligned_cols=168 Identities=19% Similarity=0.194 Sum_probs=98.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----------hhhccCCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPKS 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~p~~ 84 (406)
+....+.+|++++|+|+||+|||||+++|+|. .+|++|.+.++|.++... ...|.+|.
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~ 94 (648)
T PRK10535 26 GISLDIYAGEMVAIVGASGSGKSTLMNILGCL-----------DKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQR 94 (648)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCC
Confidence 34446889999999999999999999999999 679999999998764321 11344444
Q ss_pred C-cCceeEEEeeccccc---cccCC--CCCcchhhhhHHhh---h-----------chhhhhccc-CCCceEeecCCCCC
Q 015465 85 A-VPAFLEIHDIAGLVR---GAHEG--QGLGNSFLSHIRAV---D-----------GIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 85 ~-~~~~i~lvD~~gl~~---~~~~~--~~l~~~~l~~l~~a---d-----------~ll~vvda~-~~~~il~ld~~~dP 143 (406)
. .+..+++.|...+.. +.... ......+++.+... | --+.+++++ .+|+++++| ||
T Consensus 95 ~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllD---EP 171 (648)
T PRK10535 95 YHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILAD---EP 171 (648)
T ss_pred cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE---CC
Confidence 2 222223233221110 00000 00000011111000 0 014456666 789999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHH---HhhhccccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEK---SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~---~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
+.++|....+..... +..+.+ .+ .-.+|+..... .||++ ..|++|++...++.+
T Consensus 172 ~~gLD~~s~~~l~~l-------l~~l~~~g~ti-livsH~~~~~~-~~d~i-~~l~~G~i~~~g~~~ 228 (648)
T PRK10535 172 TGALDSHSGEEVMAI-------LHQLRDRGHTV-IIVTHDPQVAA-QAERV-IEIRDGEIVRNPPAQ 228 (648)
T ss_pred CCCCCHHHHHHHHHH-------HHHHHhcCCEE-EEECCCHHHHH-hCCEE-EEEECCEEEeecCcc
Confidence 999999986433332 222211 11 11138888664 69998 888999887665443
No 376
>PRK11058 GTPase HflX; Provisional
Probab=98.98 E-value=3.1e-10 Score=115.86 Aligned_cols=87 Identities=31% Similarity=0.490 Sum_probs=67.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
..++|+|.+|||||||||+|+|....+++.||+|++|..+.+.+++.. .+.++||+|+......
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~----------------~~~l~DTaG~~r~lp~ 261 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG----------------ETVLADTVGFIRHLPH 261 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC----------------eEEEEecCcccccCCH
Confidence 489999999999999999999988778899999999999998886531 3789999998643211
Q ss_pred CCCCcchh---hhhHHhhhchhhhhccc
Q 015465 105 GQGLGNSF---LSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 105 ~~~l~~~~---l~~l~~ad~ll~vvda~ 129 (406)
.+...| +..++.+|++++|+|++
T Consensus 262 --~lve~f~~tl~~~~~ADlIL~VvDaS 287 (426)
T PRK11058 262 --DLVAAFKATLQETRQATLLLHVVDAA 287 (426)
T ss_pred --HHHHHHHHHHHHhhcCCEEEEEEeCC
Confidence 111222 34567889999988874
No 377
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=4.4e-10 Score=112.94 Aligned_cols=93 Identities=33% Similarity=0.458 Sum_probs=76.2
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecc
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~g 97 (406)
.+++.|..++|+|+||+|||||+|+|+.....+ ++.|+||++.....+.++|.+ +.+.||+|
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~-----------------v~L~DTAG 325 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP-----------------VRLSDTAG 325 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE-----------------EEEEeccc
Confidence 346678999999999999999999999998876 999999999999999999975 89999999
Q ss_pred ccccccCC-CCC-cchhhhhHHhhhchhhhhcc
Q 015465 98 LVRGAHEG-QGL-GNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 98 l~~~~~~~-~~l-~~~~l~~l~~ad~ll~vvda 128 (406)
+....... +.+ .++....++.+|+++.|+|+
T Consensus 326 iRe~~~~~iE~~gI~rA~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 326 IREESNDGIEALGIERARKRIERADVILLVVDA 358 (531)
T ss_pred cccccCChhHHHhHHHHHHHHhhcCEEEEEecc
Confidence 98722221 222 23445678889999998887
No 378
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.97 E-value=5.4e-10 Score=129.10 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=102.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh------hhccCCC-CcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKS-AVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~p~~-~~~~ 88 (406)
+..+.+++|+.++|+||||||||||+|+|+|.... ...|.+|.|.++|.++.... ..|.+|. ....
T Consensus 79 ~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~-------~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 79 PMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDG-------FHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC-------CCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 45567889999999999999999999999998210 02468999999998764322 1355554 2333
Q ss_pred eeEEEeeccccccccC----CCCCc---------chhhhhHHhh---hc----------------hhhhhccc-CCCceE
Q 015465 89 FLEIHDIAGLVRGAHE----GQGLG---------NSFLSHIRAV---DG----------------IFHVLRAF-EDPDII 135 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~----~~~l~---------~~~l~~l~~a---d~----------------ll~vvda~-~~~~il 135 (406)
.+++.|+..+...... ..+.. +..++.+... |. -+.+.++. .+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 4555555443211000 00000 0001111000 00 02233333 589999
Q ss_pred eecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccch-HHHHHHHHHHHHHhhCCCccccCCC
Q 015465 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQL-KIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 136 ~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~-~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
++| ||++++|..........+..+.+ ..+..+.. ..|+. ..+.+++|++ .+|.+|++++.|+.
T Consensus 232 llD---EPTsgLD~~~~~~i~~~L~~la~---~~g~tvii-~~Hq~~~~i~~l~D~v-~~L~~G~iv~~G~~ 295 (1394)
T TIGR00956 232 CWD---NATRGLDSATALEFIRALKTSAN---ILDTTPLV-AIYQCSQDAYELFDKV-IVLYEGYQIYFGPA 295 (1394)
T ss_pred EEe---CCCCCcCHHHHHHHHHHHHHHHH---hcCCEEEE-EecCCCHHHHHhhceE-EEEeCCeEEEECCH
Confidence 999 99999999986444332221111 00111101 12774 6888999999 88999999888764
No 379
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.95 E-value=3.9e-10 Score=108.77 Aligned_cols=174 Identities=17% Similarity=0.215 Sum_probs=99.2
Q ss_pred CcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-----------hcc
Q 015465 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----------LFK 81 (406)
Q Consensus 13 ~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----------~~~ 81 (406)
+-.+..-.+.+|+++||||.+||||||+.++|+|+... ..-.-.+|.|.++|.++..+.. .+.
T Consensus 20 av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~------~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mI 93 (316)
T COG0444 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK------PNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMI 93 (316)
T ss_pred EEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCC------CCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEE
Confidence 34455667889999999999999999999999998310 0011356899999986533321 111
Q ss_pred CCC---CcCce---------------------------eEEEeeccccccccC----CCCCcchhhhhHHhhhchhhhhc
Q 015465 82 PKS---AVPAF---------------------------LEIHDIAGLVRGAHE----GQGLGNSFLSHIRAVDGIFHVLR 127 (406)
Q Consensus 82 p~~---~~~~~---------------------------i~lvD~~gl~~~~~~----~~~l~~~~l~~l~~ad~ll~vvd 127 (406)
+|. ..+.. +.+++.+|+...... ..++..-+.+++-.|-++.
T Consensus 94 fQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala---- 169 (316)
T COG0444 94 FQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALA---- 169 (316)
T ss_pred EcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHh----
Confidence 221 01100 011111111110000 0000001112222222222
Q ss_pred ccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 128 AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 128 a~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
-+|++++.| ||++.+|+..+.-++..+..+.+ +....+ .-.+|++..+.++||+| .++..|+++-.|+.
T Consensus 170 --~~P~LlIAD---EPTTALDvt~QaqIl~Ll~~l~~---e~~~ai-ilITHDl~vva~~aDri-~VMYaG~iVE~g~~ 238 (316)
T COG0444 170 --LNPKLLIAD---EPTTALDVTVQAQILDLLKELQR---EKGTAL-ILITHDLGVVAEIADRV-AVMYAGRIVEEGPV 238 (316)
T ss_pred --CCCCEEEeC---CCcchhhHHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhcceE-EEEECcEEEEeCCH
Confidence 489999999 99999999987555444332222 111100 11249999999999999 99999999877654
No 380
>PLN03140 ABC transporter G family member; Provisional
Probab=98.94 E-value=5.3e-10 Score=129.15 Aligned_cols=175 Identities=14% Similarity=0.197 Sum_probs=100.5
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh--hh--hhccCCC-CcCcee
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LC--QLFKPKS-AVPAFL 90 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~--l~--~~~~p~~-~~~~~i 90 (406)
+..+.+++|+.++|+||||||||||+++|+|... ..+.+|.+.++|.+... +. ..|.+|. .....+
T Consensus 898 ~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~---------~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~l 968 (1470)
T PLN03140 898 EVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQV 968 (1470)
T ss_pred CcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC---------CCcccceEEECCccCChHHhhhheEEEccccccCCCC
Confidence 4456788999999999999999999999999821 11367999998865432 11 2466655 233344
Q ss_pred EEEeeccccccccCCCCC--------cchhhhhHHh---hhch----------------hhhhccc-CCCceEeecCCCC
Q 015465 91 EIHDIAGLVRGAHEGQGL--------GNSFLSHIRA---VDGI----------------FHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 91 ~lvD~~gl~~~~~~~~~l--------~~~~l~~l~~---ad~l----------------l~vvda~-~~~~il~ld~~~d 142 (406)
++.|+..+.......... ...+++.+.. .|.. +.+.++. .+|+++++| |
T Consensus 969 TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LD---E 1045 (1470)
T PLN03140 969 TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMD---E 1045 (1470)
T ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEe---C
Confidence 555544322100000000 0001111100 0111 2233333 589999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchH-HHHHHHHHHHHHhhC-CCccccCCCCh
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK-IEHELCQRVKAWLQD-GKDVRLGDWKA 208 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~-~v~~l~~~i~~~L~~-g~~~~~~~~t~ 208 (406)
|++++|..........+..+ ..-+..+ .-.+|+.. .+..++|++ .+|.+ |++++.|+..+
T Consensus 1046 PTsgLD~~~a~~v~~~L~~l----~~~g~tV-I~t~Hq~~~~i~~~~D~v-llL~~gG~~v~~G~~~~ 1107 (1470)
T PLN03140 1046 PTSGLDARAAAIVMRTVRNT----VDTGRTV-VCTIHQPSIDIFEAFDEL-LLMKRGGQVIYSGPLGR 1107 (1470)
T ss_pred CCCCCCHHHHHHHHHHHHHH----HHCCCEE-EEEeCCCCHHHHHhCCEE-EEEcCCCEEEEECCccc
Confidence 99999998864443332211 1001111 11138887 567899998 77876 78888887654
No 381
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.93 E-value=2.2e-10 Score=121.30 Aligned_cols=158 Identities=18% Similarity=0.099 Sum_probs=90.3
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----h--hccCCCCcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~--~~~p~~~~~~~ 89 (406)
..-.+++|++++|+||||||||||+++|+|. .+|++|.|.++|.++..+. . .+.+|...-..
T Consensus 361 vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~ 429 (555)
T TIGR01194 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-----------YIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFD 429 (555)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhh
Confidence 3346789999999999999999999999999 7899999999998764322 1 24444321111
Q ss_pred eEEEee----------------cccccc---ccCC----CCCcchhhhhHHhhhchhhhhccc-CCCceEeecCCCCCCc
Q 015465 90 LEIHDI----------------AGLVRG---AHEG----QGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 90 i~lvD~----------------~gl~~~---~~~~----~~l~~~~l~~l~~ad~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
-++.+. .++... ...+ ..+..--.++ +.++|+. .+|+++++| ||++
T Consensus 430 ~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qR-------lalaRall~~~~ililD---E~ts 499 (555)
T TIGR01194 430 DLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKR-------LALICAWLEDRPILLFD---EWAA 499 (555)
T ss_pred hhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHH-------HHHHHHHHcCCCEEEEe---CCcc
Confidence 111111 000000 0000 0000000122 3455555 699999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~ 201 (406)
.+|..+++.+...+. +.+....+.+ .-.+|.... ...||+| ..|++|++.
T Consensus 500 ~LD~~~~~~i~~~l~---~~~~~~~~ti-iiisH~~~~-~~~~d~i-~~l~~G~i~ 549 (555)
T TIGR01194 500 DQDPAFKRFFYEELL---PDLKRQGKTI-IIISHDDQY-FELADQI-IKLAAGCIV 549 (555)
T ss_pred CCCHHHHHHHHHHHH---HHHHhCCCEE-EEEeccHHH-HHhCCEE-EEEECCEEE
Confidence 999998644432210 0000000111 111387764 4578888 777888765
No 382
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.1e-09 Score=114.92 Aligned_cols=161 Identities=15% Similarity=0.223 Sum_probs=98.5
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~~~~~ 88 (406)
++.-.+++|+++++|||+|+||||+.+.|... .+|++|+|.++|.++..+.- .+..|+.+-+
T Consensus 486 ~lsfti~pGe~vALVGPSGsGKSTiasLL~rf-----------Y~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLF 554 (716)
T KOG0058|consen 486 NLSFTIRPGEVVALVGPSGSGKSTIASLLLRF-----------YDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLF 554 (716)
T ss_pred CceeeeCCCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceee
Confidence 34456889999999999999999999999999 78999999999998755432 3444554444
Q ss_pred eeEEEeeccccccccCCC-------------------------------CCcchhhhhHHhhhchhhhhccc-CCCceEe
Q 015465 89 FLEIHDIAGLVRGAHEGQ-------------------------------GLGNSFLSHIRAVDGIFHVLRAF-EDPDIIH 136 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~-------------------------------~l~~~~l~~l~~ad~ll~vvda~-~~~~il~ 136 (406)
.-++.|+..++......+ .+..--.++ +.++||. .+|.+++
T Consensus 555 s~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQR-------IAIARALlr~P~VLI 627 (716)
T KOG0058|consen 555 SGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQR-------IAIARALLRNPRVLI 627 (716)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHH-------HHHHHHHhcCCCEEE
Confidence 444555444432211000 000000133 3455555 6999999
Q ss_pred ecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 137 ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|| |.++.+|..++.+...-+. +.++. +.+ ...+|.+.-++ -.|+| .++++|++...|+
T Consensus 628 LD---EATSALDaeSE~lVq~aL~---~~~~~--rTV-lvIAHRLSTV~-~Ad~I-vvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 628 LD---EATSALDAESEYLVQEALD---RLMQG--RTV-LVIAHRLSTVR-HADQI-VVIDKGRVVEMGT 685 (716)
T ss_pred Ee---chhhhcchhhHHHHHHHHH---HhhcC--CeE-EEEehhhhHhh-hccEE-EEEcCCeEEeccc
Confidence 99 8899999888755433321 11111 010 11126555433 24455 6678887776553
No 383
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.91 E-value=1.5e-09 Score=83.92 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=30.1
Q ss_pred eeEEecCCCCcchhcccchhhhhhccEEEEEe
Q 015465 316 KCWQIRRQTKAPQAAGTIHTDFERGFICAEVM 347 (406)
Q Consensus 316 raw~i~~gsta~~aAg~IHsD~~kgFi~Aev~ 347 (406)
+||++|+|+||+|+|++||+||.++|++|.++
T Consensus 23 d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~ 54 (76)
T cd01669 23 DAFLLPKGSTARDLAYAIHTDIGDGFLHAIDA 54 (76)
T ss_pred ceEEECCCCCHHHHHHHHHHHHHhcceeeEEe
Confidence 69999999999999999999999999999653
No 384
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.90 E-value=2.9e-09 Score=93.93 Aligned_cols=47 Identities=28% Similarity=0.356 Sum_probs=42.4
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC 77 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~ 77 (406)
.+..|+.++||||+|||||||+-.|+|+ -+|++|.|.+.|+++..+.
T Consensus 32 ~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-----------d~~ssGeV~l~G~~L~~ld 78 (228)
T COG4181 32 VVKRGETVAIVGPSGSGKSTLLAVLAGL-----------DDPSSGEVRLLGQPLHKLD 78 (228)
T ss_pred EecCCceEEEEcCCCCcHHhHHHHHhcC-----------CCCCCceEEEcCcchhhcC
Confidence 4679999999999999999999999999 5799999999998876554
No 385
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1e-09 Score=100.98 Aligned_cols=51 Identities=24% Similarity=0.108 Sum_probs=43.6
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC 77 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~ 77 (406)
-..++.|++.+|.||||||||||.++|+|..- .+++.|.|.++|+++..+.
T Consensus 24 nL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---------Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 24 NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---------YEVTEGEILFDGEDILELS 74 (251)
T ss_pred ceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---------ceEecceEEECCcccccCC
Confidence 34588999999999999999999999999832 5789999999999875543
No 386
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.90 E-value=1.3e-09 Score=96.92 Aligned_cols=48 Identities=29% Similarity=0.463 Sum_probs=43.0
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
.+..-+++.|+.+|+||.||||||||.++|+|. +.|++|.+.++|..+
T Consensus 30 ~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm-----------i~PTsG~il~n~~~L 77 (267)
T COG4167 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM-----------IEPTSGEILINDHPL 77 (267)
T ss_pred cceEEEecCCcEEEEEccCCCcHhHHHHHHhcc-----------cCCCCceEEECCccc
Confidence 344556788999999999999999999999999 899999999999865
No 387
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.9e-09 Score=95.21 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=40.4
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
.-.+.+|+.+-|.||||+|||||+++|+|+ .+|+.|.|.+.+..+
T Consensus 22 ~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL-----------l~p~~G~v~~~~~~i 66 (209)
T COG4133 22 SFTLNAGEALQITGPNGAGKTTLLRILAGL-----------LRPDAGEVYWQGEPI 66 (209)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHcc-----------cCCCCCeEEecCCCC
Confidence 334679999999999999999999999999 899999999987654
No 388
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.89 E-value=8.5e-09 Score=107.06 Aligned_cols=87 Identities=25% Similarity=0.411 Sum_probs=64.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
..+++|+|++|+|||||+|.|+|... .++++|++|.++....+.++|.. +.++||||+.+..
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~-----------------~~l~DTaG~~~~~ 273 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT-----------------WRFVDTAGLRRRV 273 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE-----------------EEEEECCCccccc
Confidence 47999999999999999999999865 45889999999988888887653 6899999986443
Q ss_pred cCCCCCcchh------hhhHHhhhchhhhhccc
Q 015465 103 HEGQGLGNSF------LSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~~~l~~~~------l~~l~~ad~ll~vvda~ 129 (406)
... .+..+ ...++.+|+++.|+|+.
T Consensus 274 ~~~--~~~e~~~~~~~~~~i~~ad~vilV~Da~ 304 (472)
T PRK03003 274 KQA--SGHEYYASLRTHAAIEAAEVAVVLIDAS 304 (472)
T ss_pred ccc--chHHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 221 11111 12346677777777663
No 389
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.89 E-value=2.5e-09 Score=108.06 Aligned_cols=154 Identities=19% Similarity=0.265 Sum_probs=97.1
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCCCcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~~~~~~i 90 (406)
.-.+.+|+.+|||||+|||||||.++|.|. ..|.+|.|.++|.++..+.. +|.||. +
T Consensus 356 sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~-----------w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQd-----V 419 (580)
T COG4618 356 SFALQAGEALGIIGPSGSGKSTLARLLVGI-----------WPPTSGSVRLDGADLRQWDREQLGRHIGYLPQD-----V 419 (580)
T ss_pred eeEecCCceEEEECCCCccHHHHHHHHHcc-----------cccCCCcEEecchhhhcCCHHHhccccCcCccc-----c
Confidence 345779999999999999999999999999 78999999999987755432 577764 2
Q ss_pred EEEe-----e-ccccccccCCCCCcchhhhhHHhhhc----------------------------hhhhhccc-CCCceE
Q 015465 91 EIHD-----I-AGLVRGAHEGQGLGNSFLSHIRAVDG----------------------------IFHVLRAF-EDPDII 135 (406)
Q Consensus 91 ~lvD-----~-~gl~~~~~~~~~l~~~~l~~l~~ad~----------------------------ll~vvda~-~~~~il 135 (406)
+++| + ..+..... ..+..+..+.+++ -+-+.||+ .+|.++
T Consensus 420 eLF~GTIaeNIaRf~~~~d-----~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lv 494 (580)
T COG4618 420 ELFDGTIAENIARFGEEAD-----PEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLV 494 (580)
T ss_pred eecCCcHHHHHHhccccCC-----HHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEE
Confidence 2222 0 00110000 0011111111110 13456776 899999
Q ss_pred eecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc-----ccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 136 ~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~-----~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
+|| ||.+.+|..-+.-... -+.....++. +|.. .+...+|+| -+|++|.+...|+-+
T Consensus 495 VLD---EPNsNLD~~GE~AL~~----------Ai~~~k~rG~~vvviaHRP-s~L~~~Dki-lvl~~G~~~~FG~r~ 556 (580)
T COG4618 495 VLD---EPNSNLDSEGEAALAA----------AILAAKARGGTVVVIAHRP-SALASVDKI-LVLQDGRIAAFGPRE 556 (580)
T ss_pred Eec---CCCCCcchhHHHHHHH----------HHHHHHHcCCEEEEEecCH-HHHhhccee-eeecCChHHhcCCHH
Confidence 999 9999999887532222 1222222333 2544 456778988 889999988777533
No 390
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.87 E-value=2.3e-09 Score=92.94 Aligned_cols=89 Identities=27% Similarity=0.262 Sum_probs=63.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
|.+++++|++|||||||++.+++.... ..+.|++|..+..+.+.+.+. .+.++|+||+....
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~DtpG~~~~~ 63 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGI-----------------PVRLIDTAGIRETE 63 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCE-----------------EEEEEECCCcCCCc
Confidence 578999999999999999999998653 477888888887777776543 37899999986543
Q ss_pred cCCC-CCcchhhhhHHhhhchhhhhccc
Q 015465 103 HEGQ-GLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~~-~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
.... .........+..+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~ 91 (157)
T cd04164 64 DEIEKIGIERAREAIEEADLVLFVIDAS 91 (157)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEECC
Confidence 2100 01112334456777777777663
No 391
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.86 E-value=1.9e-08 Score=88.62 Aligned_cols=82 Identities=23% Similarity=0.239 Sum_probs=54.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|||||||++.+++........|..+.+.....+.+++.. ..+.++|++|......
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~~~~- 67 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKT---------------IKAQIWDTAGQERYRA- 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCChHHHHH-
Confidence 478999999999999999999886655555555555555556665532 2478999998542111
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+++++.|.|+
T Consensus 68 ------~~~~~~~~~~~~i~v~d~ 85 (165)
T cd01868 68 ------ITSAYYRGAVGALLVYDI 85 (165)
T ss_pred ------HHHHHHCCCCEEEEEEEC
Confidence 111234566666666554
No 392
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.86 E-value=1.1e-08 Score=105.13 Aligned_cols=90 Identities=27% Similarity=0.318 Sum_probs=64.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
...+++|+|.+|+|||||+|+|+|... .+++.|++|++.....+...+. .+.++||||+...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~-----------------~~~lvDT~G~~~~ 234 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ-----------------KYTLIDTAGIRRK 234 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe-----------------eEEEEECCCCCCC
Confidence 457999999999999999999999864 4478899998877666666554 3789999998654
Q ss_pred ccCCCCC----cchhhhhHHhhhchhhhhccc
Q 015465 102 AHEGQGL----GNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 102 ~~~~~~l----~~~~l~~l~~ad~ll~vvda~ 129 (406)
......+ ..+.++.++.+|+++.|+|+.
T Consensus 235 ~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~ 266 (435)
T PRK00093 235 GKVTEGVEKYSVIRTLKAIERADVVLLVIDAT 266 (435)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCEEEEEEeCC
Confidence 4322111 112234566777777777763
No 393
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.85 E-value=1.7e-09 Score=125.82 Aligned_cols=160 Identities=15% Similarity=0.251 Sum_probs=95.3
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCCCcCceeE
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPAFLE 91 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~~~~~~i~ 91 (406)
-.+++|+++||+|++|||||||+++|+|. .+ .+|.|.++|.++..+.. .+.||......-+
T Consensus 1240 ~~I~~GekvaIvGrSGsGKSTLl~lL~rl-----------~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GT 1307 (1490)
T TIGR01271 1240 FSVEGGQRVGLLGRTGSGKSTLLSALLRL-----------LS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGT 1307 (1490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhh-----------cC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccC
Confidence 46789999999999999999999999999 44 68999999988754321 4667663322222
Q ss_pred EEeeccccccccCC-------------------CCC-------cchhhhhHHhhhchhhhhccc-CCCceEeecCCCCCC
Q 015465 92 IHDIAGLVRGAHEG-------------------QGL-------GNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 92 lvD~~gl~~~~~~~-------------------~~l-------~~~~l~~l~~ad~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
+.++.......... .++ |..+ . ..-.-++.++||. .+++++++| ||+
T Consensus 1308 IR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nL-S--gGQrQrL~LARALLr~~~ILlLD---EaT 1381 (1490)
T TIGR01271 1308 FRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVL-S--NGHKQLMCLARSILSKAKILLLD---EPS 1381 (1490)
T ss_pred HHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcC-C--HHHHHHHHHHHHHhCCCCEEEEe---CCc
Confidence 22221110000000 000 0000 0 0000123455655 699999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHH-HHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVE-KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~-~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+.+|...+..+...+. + ... .++ ...+|.+..+.. +|+| -.|++|+++..|+
T Consensus 1382 S~lD~~Te~~I~~~L~---~---~~~~~Tv-I~IaHRl~ti~~-~DrI-lvL~~G~ivE~g~ 1434 (1490)
T TIGR01271 1382 AHLDPVTLQIIRKTLK---Q---SFSNCTV-ILSEHRVEALLE-CQQF-LVIEGSSVKQYDS 1434 (1490)
T ss_pred ccCCHHHHHHHHHHHH---H---HcCCCEE-EEEecCHHHHHh-CCEE-EEEECCEEEEeCC
Confidence 9999988644433221 1 111 011 112388876654 8999 8889999886654
No 394
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.85 E-value=1.4e-08 Score=104.02 Aligned_cols=89 Identities=29% Similarity=0.316 Sum_probs=65.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
..+++++|.+|+|||||+|.|+|... .+++.|++|.++....+...+. .+.++||||+.+..
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~-----------------~~~liDT~G~~~~~ 234 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK-----------------KYLLIDTAGIRRKG 234 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc-----------------EEEEEECCCccccc
Confidence 35899999999999999999999765 3478999999988788777664 37899999987554
Q ss_pred cCCCCCc----chhhhhHHhhhchhhhhccc
Q 015465 103 HEGQGLG----NSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~~~l~----~~~l~~l~~ad~ll~vvda~ 129 (406)
.....+. .+.+..++.+|++++|+|+.
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~ 265 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDAT 265 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 3221110 12234567788888877763
No 395
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.85 E-value=2.7e-09 Score=123.67 Aligned_cols=47 Identities=21% Similarity=0.366 Sum_probs=40.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcC-Ccch
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERF 73 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~-g~~~ 73 (406)
+..-.+++|+++||+|+||||||||+++|+|. .+|++|.|.++ |.++
T Consensus 403 ~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-----------~~p~~G~I~i~~g~~i 450 (1466)
T PTZ00265 403 DLNFTLTEGKTYAFVGESGCGKSTILKLIERL-----------YDPTEGDIIINDSHNL 450 (1466)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHHHh-----------ccCCCCeEEEeCCcch
Confidence 34456789999999999999999999999999 78999999994 4554
No 396
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.84 E-value=1.7e-09 Score=111.55 Aligned_cols=171 Identities=19% Similarity=0.196 Sum_probs=101.3
Q ss_pred cCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-----------hccC
Q 015465 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----------LFKP 82 (406)
Q Consensus 14 ~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----------~~~p 82 (406)
-.+..-.+.+|+++||||.+||||||+.++|.|+.. +.. ....|.|.++|.++..+.. .+.+
T Consensus 25 v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~------~~~-~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~ 97 (539)
T COG1123 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP------EGG-RITSGEVILDGRDLLGLSEREMRKLRGKRIAMIF 97 (539)
T ss_pred eecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC------CCC-cccceEEEECCcchhcCCHHHHHHhccccEEEEe
Confidence 345566788999999999999999999999999931 110 2348999999986533321 1222
Q ss_pred CCC---cCce--------------------------eEEEeeccccccccC-----CCCCcchhhhhHHhhhchhhhhcc
Q 015465 83 KSA---VPAF--------------------------LEIHDIAGLVRGAHE-----GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 83 ~~~---~~~~--------------------------i~lvD~~gl~~~~~~-----~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
|.. .+.. +++++.+|+...... ..+-|+ .+++-.|-++.
T Consensus 98 Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~--rQRv~iAmALa----- 170 (539)
T COG1123 98 QDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGM--RQRVMIAMALA----- 170 (539)
T ss_pred cCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchH--HHHHHHHHHHh-----
Confidence 221 1100 112222222211110 001111 12222222222
Q ss_pred cCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 129 FEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 129 ~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
.+|++++.| ||+..+|+..+..++..+..+.+. ....+ .-.+|++.-+..+||++ .+|+.|+++-.|+.+
T Consensus 171 -~~P~LLIaD---EPTTaLDvt~q~qIL~llk~l~~e---~g~a~-l~ITHDl~Vva~~aDrv-~Vm~~G~iVE~G~~~ 240 (539)
T COG1123 171 -LKPKLLIAD---EPTTALDVTTQAQILDLLKDLQRE---LGMAV-LFITHDLGVVAELADRV-VVMYKGEIVETGPTE 240 (539)
T ss_pred -CCCCEEEEC---CCccccCHHHHHHHHHHHHHHHHH---cCcEE-EEEcCCHHHHHHhcCeE-EEEECCEEEEecCHH
Confidence 489999999 999999998875554443332221 11111 11239999999999999 999999988776543
No 397
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.84 E-value=2.8e-09 Score=97.82 Aligned_cols=87 Identities=34% Similarity=0.562 Sum_probs=62.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+|+|+|++|||||||+|.+++....+.+.+++|..+..+.+.+++. ..+.++|+||+......
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~i~Dt~G~~~~~~~ 105 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG----------------REVLLTDTVGFIRDLPH 105 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC----------------ceEEEeCCCccccCCCH
Confidence 69999999999999999999998766678889999998888877643 14889999998643221
Q ss_pred CCCCcchh---hhhHHhhhchhhhhccc
Q 015465 105 GQGLGNSF---LSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 105 ~~~l~~~~---l~~l~~ad~ll~vvda~ 129 (406)
.+...+ +.....+|++++|+|+.
T Consensus 106 --~~~~~~~~~~~~~~~~d~ii~v~D~~ 131 (204)
T cd01878 106 --QLVEAFRSTLEEVAEADLLLHVVDAS 131 (204)
T ss_pred --HHHHHHHHHHHHHhcCCeEEEEEECC
Confidence 111111 22345677777776663
No 398
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.84 E-value=2.7e-09 Score=109.59 Aligned_cols=93 Identities=29% Similarity=0.360 Sum_probs=70.9
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccc
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl 98 (406)
.++.|.+++|+|++|+|||||+|.|++... .++++|+||+++..+.+.++|.. +.++||||+
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~-----------------v~l~DTaG~ 261 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL-----------------IKLLDTAGI 261 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE-----------------EEEeeCCCc
Confidence 356789999999999999999999999865 35899999999989999888753 789999998
Q ss_pred cccccCCCCCc-chhhhhHHhhhchhhhhccc
Q 015465 99 VRGAHEGQGLG-NSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 99 ~~~~~~~~~l~-~~~l~~l~~ad~ll~vvda~ 129 (406)
.......+..+ .+....++.+|++++|+|+.
T Consensus 262 ~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s 293 (442)
T TIGR00450 262 REHADFVERLGIEKSFKAIKQADLVIYVLDAS 293 (442)
T ss_pred ccchhHHHHHHHHHHHHHHhhCCEEEEEEECC
Confidence 64321111111 12345668899999998875
No 399
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.83 E-value=4e-09 Score=122.28 Aligned_cols=176 Identities=15% Similarity=0.136 Sum_probs=106.8
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCC-------------------------------------------CC
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-------------------------------------------EN 53 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~-------------------------------------------~~ 53 (406)
..-.+++|+++||||++|||||||+++|.|.+.+. ..
T Consensus 1187 lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 (1466)
T PTZ00265 1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGS 1266 (1466)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34567899999999999999999999999997641 01
Q ss_pred CCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCceeEEEeeccccccccCCCCCcchhhhhHHhhh------
Q 015465 54 FPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD------ 120 (406)
Q Consensus 54 ~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad------ 120 (406)
-+-.|..|++|.|.++|.++..+. ..|.||...-+.-++.|...+....... .++.+.++.|.
T Consensus 1267 ~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~----eeI~~A~k~A~l~~fI~ 1342 (1466)
T PTZ00265 1267 GEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATR----EDVKRACKFAAIDEFIE 1342 (1466)
T ss_pred ccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCH----HHHHHHHHHcCCHHHHH
Confidence 123456678999999998875543 2477887555455555555444211100 00001111100
Q ss_pred ----------------------chhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc
Q 015465 121 ----------------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN 177 (406)
Q Consensus 121 ----------------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~ 177 (406)
-.+.++||+ .+|++++|| ||++.+|..++..+..-+..+.. .-.+++ .-.
T Consensus 1343 ~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD---EaTSaLD~~sE~~I~~~L~~~~~---~~~~Tv-IiI 1415 (1466)
T PTZ00265 1343 SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD---EATSSLDSNSEKLIEKTIVDIKD---KADKTI-ITI 1415 (1466)
T ss_pred hCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CcccccCHHHHHHHHHHHHHHhc---cCCCEE-EEE
Confidence 014456666 699999999 99999999987554433221100 000110 112
Q ss_pred ccchHHHHHHHHHHHHHhhC----CCcc-ccCC
Q 015465 178 DKQLKIEHELCQRVKAWLQD----GKDV-RLGD 205 (406)
Q Consensus 178 ~h~~~~v~~l~~~i~~~L~~----g~~~-~~~~ 205 (406)
+|.+..+ .-||+| .+|++ |+++ ..|+
T Consensus 1416 aHRlsti-~~aD~I-vvl~~~~~~G~iv~e~Gt 1446 (1466)
T PTZ00265 1416 AHRIASI-KRSDKI-VVFNNPDRTGSFVQAHGT 1446 (1466)
T ss_pred echHHHH-HhCCEE-EEEeCCCCCCCEEEEecC
Confidence 3888665 458888 77887 7754 3454
No 400
>PLN03073 ABC transporter F family; Provisional
Probab=98.81 E-value=9.6e-10 Score=119.13 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=48.2
Q ss_pred hhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc-
Q 015465 124 HVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV- 201 (406)
Q Consensus 124 ~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~- 201 (406)
.+++++ .+|+++++| ||++.+|+...+.. .+.+..+...+.. .+|+...+..+|+++ .+|++|++.
T Consensus 354 ~LA~aL~~~p~lLlLD---EPt~~LD~~~~~~l-------~~~L~~~~~tvii-vsHd~~~l~~~~d~i-~~l~~g~i~~ 421 (718)
T PLN03073 354 ALARALFIEPDLLLLD---EPTNHLDLHAVLWL-------ETYLLKWPKTFIV-VSHAREFLNTVVTDI-LHLHGQKLVT 421 (718)
T ss_pred HHHHHHhcCCCEEEEE---CCCCCCCHHHHHHH-------HHHHHHcCCEEEE-EECCHHHHHHhCCEE-EEEECCEEEE
Confidence 344444 599999999 99999999884322 2222222211111 239999999999999 888999885
Q ss_pred ccCCCC
Q 015465 202 RLGDWK 207 (406)
Q Consensus 202 ~~~~~t 207 (406)
+.|+++
T Consensus 422 ~~g~~~ 427 (718)
T PLN03073 422 YKGDYD 427 (718)
T ss_pred eCCCHH
Confidence 445543
No 401
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.81 E-value=4.6e-09 Score=108.31 Aligned_cols=92 Identities=29% Similarity=0.348 Sum_probs=70.6
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~ 99 (406)
...|.+++++|++|||||||+|.|++.... ++++|++|.++....+.++|.+ +.++||||+.
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~-----------------i~l~DT~G~~ 274 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP-----------------LRLIDTAGIR 274 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE-----------------EEEEeCCCCC
Confidence 456789999999999999999999998764 5899999999998888887653 7999999986
Q ss_pred ccccCCCCCc-chhhhhHHhhhchhhhhccc
Q 015465 100 RGAHEGQGLG-NSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 100 ~~~~~~~~l~-~~~l~~l~~ad~ll~vvda~ 129 (406)
......+..+ .+.+..++.+|++++|+|+.
T Consensus 275 ~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s 305 (449)
T PRK05291 275 ETDDEVEKIGIERSREAIEEADLVLLVLDAS 305 (449)
T ss_pred CCccHHHHHHHHHHHHHHHhCCEEEEEecCC
Confidence 4221101111 12345678899999999985
No 402
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.79 E-value=2.4e-08 Score=108.63 Aligned_cols=86 Identities=29% Similarity=0.411 Sum_probs=64.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
.+++|+|++|||||||+|.|++.... ++++|+||+++....+.+.|.. +.++||||+.+...
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~-----------------~~liDTaG~~~~~~ 513 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED-----------------WLFIDTAGIKRRQH 513 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE-----------------EEEEECCCcccCcc
Confidence 68999999999999999999998764 4889999999988888887653 67999999865432
Q ss_pred CCCCCcchh------hhhHHhhhchhhhhccc
Q 015465 104 EGQGLGNSF------LSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 104 ~~~~l~~~~------l~~l~~ad~ll~vvda~ 129 (406)
... +..+ ...++.+|++++|+|+.
T Consensus 514 ~~~--~~e~~~~~r~~~~i~~advvilViDat 543 (712)
T PRK09518 514 KLT--GAEYYSSLRTQAAIERSELALFLFDAS 543 (712)
T ss_pred cch--hHHHHHHHHHHHHhhcCCEEEEEEECC
Confidence 211 1111 23356677777776663
No 403
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.79 E-value=2.7e-09 Score=124.20 Aligned_cols=159 Identities=18% Similarity=0.244 Sum_probs=91.0
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccc
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl 98 (406)
-.+++|+.++|+||||||||||+++|+|. ..|+.|.|.++|. ..|.||.......++.|...+
T Consensus 447 l~i~~G~~~~I~G~~GsGKSTLl~~l~G~-----------~~~~~G~i~~~g~------iayv~Q~~~l~~~Ti~eNI~~ 509 (1490)
T TIGR01271 447 FKLEKGQLLAVAGSTGSGKSSLLMMIMGE-----------LEPSEGKIKHSGR------ISFSPQTSWIMPGTIKDNIIF 509 (1490)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCE------EEEEeCCCccCCccHHHHHHh
Confidence 45779999999999999999999999999 7899999998773 234444311111122222221
Q ss_pred cccccCCCCCcchhhh------hH-------------------Hhhhchhhhhccc-CCCceEeecCCCCCCchHHHHHH
Q 015465 99 VRGAHEGQGLGNSFLS------HI-------------------RAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (406)
Q Consensus 99 ~~~~~~~~~l~~~~l~------~l-------------------~~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~ 152 (406)
...... . .....+. .+ ..-...+.++||. .+|+++++| ||++.+|....
T Consensus 510 g~~~~~-~-~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLD---ep~saLD~~~~ 584 (1490)
T TIGR01271 510 GLSYDE-Y-RYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFTHLDVVTE 584 (1490)
T ss_pred ccccch-H-HHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHH
Confidence 110000 0 0000000 00 0001113455555 699999999 99999999876
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
..+...+ +.+... .+.+ .-.+|+...+.. ||++ ..|++|++...|+.
T Consensus 585 ~~i~~~~--l~~~~~--~~tv-ilvtH~~~~~~~-ad~i-i~l~~g~i~~~g~~ 631 (1490)
T TIGR01271 585 KEIFESC--LCKLMS--NKTR-ILVTSKLEHLKK-ADKI-LLLHEGVCYFYGTF 631 (1490)
T ss_pred HHHHHHH--HHHHhc--CCeE-EEEeCChHHHHh-CCEE-EEEECCEEEEEcCH
Confidence 4433211 111000 0111 111388887654 8988 78888988766543
No 404
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.77 E-value=7.7e-09 Score=94.68 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=49.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCC--CCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAEN--FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~--~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
.|+|+|++|||||||+|+|+|.....+. .+.+|..+..+...+.|. .+.++||||+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~i~viDTPG~~d~~ 63 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR-----------------RVNVIDTPGLFDTS 63 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe-----------------EEEEEECcCCCCcc
Confidence 6899999999999999999998764432 567788888888777664 48999999998653
No 405
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.77 E-value=1.4e-08 Score=89.76 Aligned_cols=58 Identities=31% Similarity=0.429 Sum_probs=49.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
.++++|++|+|||||+|.|++....++++|++|..+..+.+...+. .+.++||||...
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYL-----------------RWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCce-----------------EEEEEECCCcCC
Confidence 6899999999999999999998877778899999888888766543 389999999854
No 406
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.76 E-value=5e-09 Score=122.34 Aligned_cols=156 Identities=16% Similarity=0.208 Sum_probs=91.3
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecc
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~g 97 (406)
.-.+++|+.++|+|+||||||||+++|+|. .+|++|.|.++|. ..|.||.......++.|...
T Consensus 658 sl~i~~G~~v~IvG~~GsGKSTLl~~l~g~-----------~~~~~G~i~~~g~------i~yv~Q~~~l~~~Ti~eNI~ 720 (1522)
T TIGR00957 658 TFSIPEGALVAVVGQVGCGKSSLLSALLAE-----------MDKVEGHVHMKGS------VAYVPQQAWIQNDSLRENIL 720 (1522)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CccCCcEEEECCE------EEEEcCCccccCCcHHHHhh
Confidence 345789999999999999999999999999 7789999988762 23444431111112222221
Q ss_pred cccccc------------------------------CCCCCcchhhhhHHhhhchhhhhccc-CCCceEeecCCCCCCch
Q 015465 98 LVRGAH------------------------------EGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (406)
Q Consensus 98 l~~~~~------------------------------~~~~l~~~~l~~l~~ad~ll~vvda~-~~~~il~ld~~~dP~~~ 146 (406)
+..... .+..+..--.++ +.++||. .+|+++++| ||++.
T Consensus 721 ~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqR-------iaLARAl~~~~~illLD---Ep~sa 790 (1522)
T TIGR00957 721 FGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR-------VSLARAVYSNADIYLFD---DPLSA 790 (1522)
T ss_pred cCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHH-------HHHHHHHhcCCCEEEEc---CCccc
Confidence 111000 000000000122 3455555 699999999 99999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH-HHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 147 LEVISAELRLKDIEFMERRIEDVE-KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~-~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
+|......+...+.... .... +.+ .-.+|+...+.. +|+| ..|++|++...|+.
T Consensus 791 LD~~~~~~i~~~l~~~~---~~~~~~tv-IlvTH~~~~l~~-~D~i-i~l~~G~i~~~g~~ 845 (1522)
T TIGR00957 791 VDAHVGKHIFEHVIGPE---GVLKNKTR-ILVTHGISYLPQ-VDVI-IVMSGGKISEMGSY 845 (1522)
T ss_pred cCHHHHHHHHHHHhhhh---hhhcCCEE-EEEeCChhhhhh-CCEE-EEecCCeEEeeCCH
Confidence 99987644332221000 0000 011 112388877655 8988 78889988766653
No 407
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.75 E-value=1.5e-07 Score=85.36 Aligned_cols=58 Identities=33% Similarity=0.319 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~--~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
...-|+++|++|+|||||+|+|+|.. +.++..|+.|..++--.+. + .+.++|+||++-
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~--~------------------~~~lVDlPGYGy 82 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD--D------------------ELRLVDLPGYGY 82 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec--C------------------cEEEEeCCCccc
Confidence 45689999999999999999999977 5679999999887754432 1 278999999864
No 408
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.75 E-value=1.3e-07 Score=86.90 Aligned_cols=88 Identities=19% Similarity=0.286 Sum_probs=51.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC-
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE- 104 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~- 104 (406)
+|+|+|.+|+|||||++.+++........|.++.....-.+.++|.. ..+.++|++|+......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~---------------~~l~i~Dt~G~~~~~~~~ 66 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRV---------------YDLHILDVPNMQRYPGTA 66 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEE---------------EEEEEEeCCCcccCCccc
Confidence 68999999999999999999875433333333322222344555532 24789999997543211
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+..........++.+|+++.|+|+
T Consensus 67 ~~e~~~~~~~~~~~ad~iilv~D~ 90 (198)
T cd04142 67 GQEWMDPRFRGLRNSRAFILVYDI 90 (198)
T ss_pred hhHHHHHHHhhhccCCEEEEEEEC
Confidence 111111112335667777776665
No 409
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.74 E-value=6.9e-09 Score=106.31 Aligned_cols=87 Identities=26% Similarity=0.307 Sum_probs=67.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
+|+|+|++|+|||||+|.|+|.... ++++|++|++...+.+.+.|.. +.++||||+......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~-----------------~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE-----------------FILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE-----------------EEEEECCCCCCcchh
Confidence 4799999999999999999998754 4789999999999998887753 899999998532211
Q ss_pred -CCCCcchhhhhHHhhhchhhhhccc
Q 015465 105 -GQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 105 -~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
...+.......++.+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~ 89 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGR 89 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCC
Confidence 1112233455678899999999885
No 410
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.74 E-value=1.5e-07 Score=82.99 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=51.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.++.++|++|+|||||++.+.+........|..+.+.....+.+.+.. ..+.++|++|......
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~~- 66 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERFRT- 66 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCcHhHHH-
Confidence 478999999999999999999875443333333333333444454432 2478999999543211
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+|+
T Consensus 67 ------~~~~~~~~~~~ii~v~d~ 84 (166)
T cd01869 67 ------ITSSYYRGAHGIIIVYDV 84 (166)
T ss_pred ------HHHHHhCcCCEEEEEEEC
Confidence 112345677888877665
No 411
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.73 E-value=9e-09 Score=101.59 Aligned_cols=162 Identities=22% Similarity=0.313 Sum_probs=96.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-hccCCCCcCceeEEEe
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-LFKPKSAVPAFLEIHD 94 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-~~~p~~~~~~~i~lvD 94 (406)
...-++.+|+.+||||.+|||||||=.+|.++ +.+. |.|.+.|+++..+.. ...|-+. .-++.|-|
T Consensus 305 ~isl~L~~gqTlGlVGESGSGKsTlG~allrL-----------~~s~-G~I~F~G~~i~~~~~~~mrplR~-~mQvVFQD 371 (534)
T COG4172 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRL-----------IPSQ-GEIRFDGQDIDGLSRKEMRPLRR-RMQVVFQD 371 (534)
T ss_pred cceeEecCCCeEEEEecCCCCcchHHHHHHhh-----------cCcC-ceEEECCccccccChhhhhhhhh-hceEEEeC
Confidence 34445778999999999999999999999998 4454 999999998765442 1122110 01122222
Q ss_pred eccccc---------------------------------------------cccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 95 IAGLVR---------------------------------------------GAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 95 ~~gl~~---------------------------------------------~~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
--|-.. .+++ .+-|. .+++..|.+++.
T Consensus 372 PygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhE-FSGGQ--RQRIAIARAliL----- 443 (534)
T COG4172 372 PYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHE-FSGGQ--RQRIAIARALIL----- 443 (534)
T ss_pred CCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcc-cCcch--hhHHHHHHHHhc-----
Confidence 211110 0000 00111 133333444444
Q ss_pred CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 130 EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 130 ~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
.|.++++| ||++.+|.--+.-++.-+..+.++.+ + .... .+|++.-+..+|+++ .++.+|+++..|+.+
T Consensus 444 -kP~~i~LD---EPTSALD~SVQaQvv~LLr~LQ~k~~-L-sYLF--ISHDL~VvrAl~~~v-iVm~~GkiVE~G~~~ 512 (534)
T COG4172 444 -KPELILLD---EPTSALDRSVQAQVLDLLRDLQQKHG-L-SYLF--ISHDLAVVRALCHRV-IVMRDGKIVEQGPTE 512 (534)
T ss_pred -CCcEEEec---CCchHhhHHHHHHHHHHHHHHHHHhC-C-eEEE--EeccHHHHHHhhceE-EEEeCCEEeeeCCHH
Confidence 89999999 99998887654333222221211110 0 0001 139999999999999 899999999877643
No 412
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=8.1e-09 Score=104.50 Aligned_cols=71 Identities=18% Similarity=0.413 Sum_probs=50.2
Q ss_pred hhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc-c
Q 015465 125 VLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-R 202 (406)
Q Consensus 125 vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~-~ 202 (406)
++||. .+||++.|| ||++.+|+.+ +.+++..+..+..++ ....|+......+|+.| .+++.-++- +
T Consensus 209 LARAlf~~pDlLLLD---EPTNhLDv~a-------v~WLe~yL~t~~~T~-liVSHDr~FLn~V~tdI-IH~~~~kL~~Y 276 (582)
T KOG0062|consen 209 LARALFAKPDLLLLD---EPTNHLDVVA-------VAWLENYLQTWKITS-LIVSHDRNFLNTVCTDI-IHLENLKLDYY 276 (582)
T ss_pred HHHHHhcCCCEEeec---CCcccchhHH-------HHHHHHHHhhCCceE-EEEeccHHHHHHHHHHH-HHHhhhhhhhh
Confidence 34443 599999999 9999999887 445666666555322 22239999999999999 777765543 3
Q ss_pred cCCCC
Q 015465 203 LGDWK 207 (406)
Q Consensus 203 ~~~~t 207 (406)
.|+++
T Consensus 277 kGN~~ 281 (582)
T KOG0062|consen 277 KGNYS 281 (582)
T ss_pred cCcHH
Confidence 46655
No 413
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.70 E-value=2.2e-07 Score=82.48 Aligned_cols=82 Identities=24% Similarity=0.187 Sum_probs=52.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|+|||||++.+++........|..+.+.....+.+.+.. ..+.++|++|....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~--- 66 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQ---------------IKLQIWDTAGQESF--- 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCcHHH---
Confidence 489999999999999999999875433333333334434445555432 24789999994321
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.......++.+|+++.|+|+
T Consensus 67 ----~~~~~~~~~~~d~il~v~d~ 86 (168)
T cd01866 67 ----RSITRSYYRGAAGALLVYDI 86 (168)
T ss_pred ----HHHHHHHhccCCEEEEEEEC
Confidence 11122345677888777765
No 414
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.70 E-value=4e-08 Score=104.49 Aligned_cols=54 Identities=43% Similarity=0.604 Sum_probs=48.1
Q ss_pred cCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 31 GLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 31 G~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
|.||+|||||+|.|+|....++++|++|.+...|.+.+++. .+.++|+||....
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~-----------------~i~lvDtPG~~~~ 54 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE-----------------DIEIVDLPGIYSL 54 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe-----------------EEEEEECCCcccc
Confidence 89999999999999999888899999999999999988764 3789999998653
No 415
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.70 E-value=1.3e-08 Score=109.87 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=35.5
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCC
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g 70 (406)
...+++|++++|+||||||||||+++|+|. .+|+.|.+.+++
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl-----------~~~~~G~i~~~~ 513 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGEL-----------WPVYGGRLTKPA 513 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEeecC
Confidence 345779999999999999999999999999 557778777654
No 416
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.69 E-value=9.8e-09 Score=89.39 Aligned_cols=82 Identities=35% Similarity=0.479 Sum_probs=58.1
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC--C
Q 015465 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG--Q 106 (406)
Q Consensus 29 liG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~--~ 106 (406)
|+|.+|+|||||+|.++|.....+++|++|+....+.+.+++. .+.++||||........ .
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~liDtpG~~~~~~~~~~~ 63 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK-----------------EIEIVDLPGTYSLSPYSEDE 63 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe-----------------EEEEEECCCccccCCCChhH
Confidence 5899999999999999998766788999999999888888753 37999999986433211 0
Q ss_pred CCcchhhhhHHhhhchhhhhcc
Q 015465 107 GLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 107 ~l~~~~l~~l~~ad~ll~vvda 128 (406)
.+...++.. ..+|++++|+|+
T Consensus 64 ~~~~~~~~~-~~~d~vi~v~d~ 84 (158)
T cd01879 64 KVARDFLLG-EKPDLIVNVVDA 84 (158)
T ss_pred HHHHHHhcC-CCCcEEEEEeeC
Confidence 111111111 356666666655
No 417
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.68 E-value=1.9e-07 Score=81.84 Aligned_cols=81 Identities=16% Similarity=0.248 Sum_probs=48.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
++.++|++|+|||||++.+++........|..+.+...-.+.+.+.. ..+.++|++|......
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~-- 64 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKE---------------VRVNFFDLSGHPEYLE-- 64 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeE---------------EEEEEEECCccHHHHH--
Confidence 68999999999999999999885433222211222222234444432 3588999999643211
Q ss_pred CCCcchhhhhHHhhhchhhhhcc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+ ....++.+|+++.|+|.
T Consensus 65 --~---~~~~~~~~d~~ilv~D~ 82 (168)
T cd04119 65 --V---RNEFYKDTQGVLLVYDV 82 (168)
T ss_pred --H---HHHHhccCCEEEEEEEC
Confidence 1 11234567777776655
No 418
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.68 E-value=3.4e-07 Score=80.21 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=49.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|+|||||++.+.+... ...++.++.......+.+.+.. ..+.++|+||.....
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~-- 64 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQW---------------AILDILDTAGQEEFS-- 64 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECCEE---------------EEEEEEECCCCcchh--
Confidence 5899999999999999999987643 2334433332223333444431 247899999954321
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+++
T Consensus 65 -----~~~~~~~~~~~~~ilv~d~ 83 (164)
T cd04145 65 -----AMREQYMRTGEGFLLVFSV 83 (164)
T ss_pred -----HHHHHHHhhCCEEEEEEEC
Confidence 1112345667777776655
No 419
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=1.2e-08 Score=115.24 Aligned_cols=50 Identities=32% Similarity=0.414 Sum_probs=44.2
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC 77 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~ 77 (406)
..-.+++|++|||||++|||||||+++|.+. .+|..|.|.++|.++..+.
T Consensus 1159 is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl-----------~e~~~G~I~IDgvdI~~ig 1208 (1381)
T KOG0054|consen 1159 ISFTIKPGEKVGIVGRTGAGKSSLILALFRL-----------VEPAEGEILIDGVDISKIG 1208 (1381)
T ss_pred ceEEEcCCceEEEeCCCCCCHHHHHHHHHHh-----------cCccCCeEEEcCeeccccc
Confidence 3445789999999999999999999999999 8899999999999875543
No 420
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=1.5e-08 Score=112.28 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=100.0
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----h--hccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~--~~~p~~~~~~ 88 (406)
++...++.|+.+|||||+||||||.+.+|-.. .+|+.|.|.++|.++..+. . ..+.|+.+-+
T Consensus 1008 ~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRf-----------Ydp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF 1076 (1228)
T KOG0055|consen 1008 NLSLSIRAGQTVALVGPSGSGKSTVISLLERF-----------YDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLF 1076 (1228)
T ss_pred CCcEEecCCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCCCeEEECCcccccCCHHHHHHhcceeccCchhh
Confidence 44556889999999999999999999999999 7899999999998764432 1 2444544333
Q ss_pred eeEEEeeccccc-c---------------------ccCC---------CCCcchhhhhHHhhhchhhhhcccCCCceEee
Q 015465 89 FLEIHDIAGLVR-G---------------------AHEG---------QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHV 137 (406)
Q Consensus 89 ~i~lvD~~gl~~-~---------------------~~~~---------~~l~~~~l~~l~~ad~ll~vvda~~~~~il~l 137 (406)
.-++.|+..++. . ...+ ..+..--.+++..|.+++ .+|.+++|
T Consensus 1077 ~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil------RnPkILLL 1150 (1228)
T KOG0055|consen 1077 NGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL------RNPKILLL 1150 (1228)
T ss_pred cccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH------cCCCeeee
Confidence 334444333331 0 0000 001000124444444444 49999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhc---cccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS---NDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 138 d~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~---~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
| |.++.||..++... ++.+++... .++ .+|.+.-+ .-||.| .++++|+++..|+
T Consensus 1151 D---EATSALDseSErvV-------QeALd~a~~--gRT~IvIAHRLSTI-qnaD~I-~Vi~~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1151 D---EATSALDSESERVV-------QEALDRAME--GRTTIVIAHRLSTI-QNADVI-AVLKNGKVVEQGT 1207 (1228)
T ss_pred e---ccchhhhhhhHHHH-------HHHHHHhhc--CCcEEEEecchhhh-hcCCEE-EEEECCEEEeccc
Confidence 9 88999998886443 333333221 111 12766543 457777 8889999887765
No 421
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.66 E-value=2.3e-08 Score=102.64 Aligned_cols=89 Identities=26% Similarity=0.252 Sum_probs=68.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
.+|+|+|.+|+|||||+|.|+|.... ++++|++|.+...+.+.+.|. .+.++||||+.....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~-----------------~~~liDT~G~~~~~~ 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGR-----------------EFILIDTGGIEPDDD 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCc-----------------EEEEEECCCCCCcch
Confidence 37999999999999999999998763 478999999999998888764 389999999875221
Q ss_pred C-CCCCcchhhhhHHhhhchhhhhcccC
Q 015465 104 E-GQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 104 ~-~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
. ...+.......++.+|++++|+|+..
T Consensus 65 ~~~~~~~~~~~~~~~~ad~il~vvd~~~ 92 (435)
T PRK00093 65 GFEKQIREQAELAIEEADVILFVVDGRA 92 (435)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 0 01122234456788999999999853
No 422
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.66 E-value=2.7e-08 Score=88.46 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=38.6
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
.+.+.|..|.|||.+||||||+++++.-+ -.|+.|.|.++|..+
T Consensus 27 L~A~~GdVisIIGsSGSGKSTfLRCiN~L-----------E~P~~G~I~v~geei 70 (256)
T COG4598 27 LQANAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSAGSIRVNGEEI 70 (256)
T ss_pred eecCCCCEEEEecCCCCchhHHHHHHHhh-----------cCCCCceEEECCeEE
Confidence 34568999999999999999999999988 579999999988754
No 423
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.65 E-value=2.8e-08 Score=103.23 Aligned_cols=88 Identities=24% Similarity=0.289 Sum_probs=66.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
.+|+|+|++|+|||||+|.|+|.... +.+.|++|.+...+.+.+.|. .+.++||+|+.....
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~-----------------~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR-----------------RFTVVDTGGWEPDAK 101 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc-----------------EEEEEeCCCcCCcch
Confidence 58999999999999999999997653 478999998888888887764 378999999763221
Q ss_pred C-CCCCcchhhhhHHhhhchhhhhccc
Q 015465 104 E-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 104 ~-~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
. ...+.......++.+|++++|+|+.
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~ 128 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDAT 128 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 1 0111222344578899999999986
No 424
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.64 E-value=2.3e-08 Score=87.49 Aligned_cols=81 Identities=26% Similarity=0.303 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA---ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~---~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
+.++++|++|||||||+|+|+|..... ...+++|+.+....+.+.+. ..+.++||||....
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~~~DtpG~~~~ 64 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSG----------------KRLGFIDVPGHEKF 64 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCC----------------cEEEEEECCChHHH
Confidence 478999999999999999999864221 22355666665555555411 24899999996321
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.......++.+|++++|+|+
T Consensus 65 -------~~~~~~~~~~ad~ii~V~d~ 84 (164)
T cd04171 65 -------IKNMLAGAGGIDLVLLVVAA 84 (164)
T ss_pred -------HHHHHhhhhcCCEEEEEEEC
Confidence 11223445678888888776
No 425
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.63 E-value=1.5e-08 Score=87.90 Aligned_cols=84 Identities=29% Similarity=0.287 Sum_probs=59.2
Q ss_pred EEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc-CC
Q 015465 28 GIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH-EG 105 (406)
Q Consensus 28 gliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~-~~ 105 (406)
+++|.+|+|||||+|.|++... ..++.|++|.......+.+.+. .+.++|+||+..... ..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~i~DtpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGR-----------------EFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCe-----------------EEEEEECCCCCCchhHHH
Confidence 5799999999999999999754 3467888888777777766543 378999999875432 01
Q ss_pred CCCcchhhhhHHhhhchhhhhcc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda 128 (406)
..+.......++.+|++++|+++
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~ 86 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDG 86 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEec
Confidence 11222334456778888887766
No 426
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.63 E-value=6.7e-08 Score=84.91 Aligned_cols=88 Identities=26% Similarity=0.340 Sum_probs=60.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
.+++++|.+|+|||||+|+|++... ...+.|++|.....+.+...+. .+.++|+||+....+
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~iiDtpG~~~~~~ 65 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK-----------------KYTLIDTAGIRRKGK 65 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe-----------------eEEEEECCCCccccc
Confidence 5799999999999999999999764 3367788888777677666654 378999999875432
Q ss_pred CCCCCc----chhhhhHHhhhchhhhhccc
Q 015465 104 EGQGLG----NSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 104 ~~~~l~----~~~l~~l~~ad~ll~vvda~ 129 (406)
....+. ...+..++.+|+++.|+|+.
T Consensus 66 ~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~ 95 (174)
T cd01895 66 VEEGIEKYSVLRTLKAIERADVVLLVIDAT 95 (174)
T ss_pred hhccHHHHHHHHHHHHHhhcCeEEEEEeCC
Confidence 221110 11223456677777777663
No 427
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.63 E-value=4.5e-07 Score=80.28 Aligned_cols=82 Identities=22% Similarity=0.235 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|+|||||++.+++........|..+.+.....+.+++.. ..+.++|++|......
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~D~~g~~~~~~- 67 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKK---------------IKLQIWDTAGQERFRT- 67 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEE---------------EEEEEEeCCchHHHHH-
Confidence 479999999999999999999875433322222222222334444432 2478999999543211
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.+.|+
T Consensus 68 ------~~~~~~~~ad~~i~v~d~ 85 (167)
T cd01867 68 ------ITTAYYRGAMGIILVYDI 85 (167)
T ss_pred ------HHHHHhCCCCEEEEEEEC
Confidence 112345678888777665
No 428
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.63 E-value=2.8e-08 Score=86.39 Aligned_cols=88 Identities=28% Similarity=0.297 Sum_probs=56.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
..+++++|++|||||||+|.++|..... .+.+.+|.....+.....+ ..+.++|+||+....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDD-----------------AQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCC-----------------eEEEEEECCCCCcch
Confidence 3579999999999999999999986533 4555666555555443332 237899999987543
Q ss_pred cCC-CCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEG-QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~-~~l~~~~l~~l~~ad~ll~vvda 128 (406)
... ..+.......+..+|++++++++
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~ 92 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDA 92 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEEC
Confidence 211 11111223345666776666655
No 429
>PTZ00243 ABC transporter; Provisional
Probab=98.63 E-value=2.8e-08 Score=116.11 Aligned_cols=160 Identities=19% Similarity=0.206 Sum_probs=89.3
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccc
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl 98 (406)
-.+++|+.++|+|+||||||||+++|+|. .+|+.|.|.+.+. ..|.||.......++.|...+
T Consensus 681 l~i~~G~~~~IiG~nGsGKSTLL~~i~G~-----------~~~~~G~i~~~~~------i~yv~Q~~~l~~~Tv~enI~~ 743 (1560)
T PTZ00243 681 VSVPRGKLTVVLGATGSGKSTLLQSLLSQ-----------FEISEGRVWAERS------IAYVPQQAWIMNATVRGNILF 743 (1560)
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCe------EEEEeCCCccCCCcHHHHHHc
Confidence 45789999999999999999999999999 7788998876421 234444311111223332222
Q ss_pred cccccCC--------C-----------CC----cchhhhhH-Hhhhchhhhhccc-CCCceEeecCCCCCCchHHHHHHH
Q 015465 99 VRGAHEG--------Q-----------GL----GNSFLSHI-RAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAE 153 (406)
Q Consensus 99 ~~~~~~~--------~-----------~l----~~~~l~~l-~~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~e 153 (406)
....... . ++ +... ..+ ..-...+.+++|. .+|+++++| ||++.+|....+
T Consensus 744 ~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g-~~LSGGQkqRvaLARAl~~~p~illLD---EP~saLD~~~~~ 819 (1560)
T PTZ00243 744 FDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKG-VNLSGGQKARVSLARAVYANRDVYLLD---DPLSALDAHVGE 819 (1560)
T ss_pred CChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEc---CccccCCHHHHH
Confidence 1100000 0 00 0000 000 0001114455665 699999999 999999987643
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 154 LRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 154 l~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
.+...+ +...+. .+.+ .-.+|+...+ ..+|++ .+|++|++...|+.
T Consensus 820 ~i~~~~--~~~~~~--~~Tv-IlvTH~~~~~-~~ad~i-i~l~~G~i~~~G~~ 865 (1560)
T PTZ00243 820 RVVEEC--FLGALA--GKTR-VLATHQVHVV-PRADYV-VALGDGRVEFSGSS 865 (1560)
T ss_pred HHHHHH--HHHhhC--CCEE-EEEeCCHHHH-HhCCEE-EEEECCEEEEecCH
Confidence 222211 000010 0111 1113888776 468988 88899998776654
No 430
>PLN03130 ABC transporter C family member; Provisional
Probab=98.62 E-value=2e-08 Score=117.65 Aligned_cols=154 Identities=19% Similarity=0.280 Sum_probs=87.2
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCce-eEEEcCCcchhhhhhhccCCCCcCceeEEEe--
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE-ARVNIPDERFEWLCQLFKPKSAVPAFLEIHD-- 94 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~-G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD-- 94 (406)
--.+++|+.++|+|++|||||||+++|+|. .+|.+ |.|.+.+. ..|.||...-..-++.|
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~-----------~~~~~GG~I~l~~~------Iayv~Q~p~LfngTIreNI 699 (1622)
T PLN03130 637 NLDVPVGSLVAIVGSTGEGKTSLISAMLGE-----------LPPRSDASVVIRGT------VAYVPQVSWIFNATVRDNI 699 (1622)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHh-----------hccCCCceEEEcCe------EEEEcCccccCCCCHHHHH
Confidence 345789999999999999999999999999 67888 88876542 12333321111111111
Q ss_pred ----------------eccccc-------ccc-----CCCCCcchhhhhHHhhhchhhhhccc-CCCceEeecCCCCCCc
Q 015465 95 ----------------IAGLVR-------GAH-----EGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 95 ----------------~~gl~~-------~~~-----~~~~l~~~~l~~l~~ad~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
..++.. +.. ++..+..--.+++ .++||. .+++++++| ||++
T Consensus 700 ~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRI-------aLARAly~~~~IlLLD---EptS 769 (1622)
T PLN03130 700 LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRV-------SMARAVYSNSDVYIFD---DPLS 769 (1622)
T ss_pred hCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHH-------HHHHHHhCCCCEEEEC---CCcc
Confidence 111110 000 0000100011333 444554 599999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHH-HHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDV-EKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~-~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
.+|......+.. +.+... ......-.+|.... ..-+|+| ..|++|++...|+.
T Consensus 770 ALD~~~~~~I~~------~~l~~~l~~kTvIlVTH~l~~-l~~aD~I-i~L~~G~i~e~Gt~ 823 (1622)
T PLN03130 770 ALDAHVGRQVFD------KCIKDELRGKTRVLVTNQLHF-LSQVDRI-ILVHEGMIKEEGTY 823 (1622)
T ss_pred ccCHHHHHHHHH------HHhhHHhcCCEEEEEECCHhH-HHhCCEE-EEEeCCEEEEeCCH
Confidence 999876432211 111111 10000112387754 4558888 77899998876654
No 431
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.62 E-value=3.9e-07 Score=80.49 Aligned_cols=81 Identities=23% Similarity=0.222 Sum_probs=47.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
+++++|++|||||||++.+++........+..+.+.....+.+++.. ..+.++|++|.....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~--- 63 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKL---------------VTLQIWDTAGQERFQ--- 63 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEE---------------EEEEEEeCCChHHHH---
Confidence 68999999999999999999875322111111111222234444321 247899999853221
Q ss_pred CCCcchhhhhHHhhhchhhhhcc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.++|+
T Consensus 64 ----~~~~~~~~~~d~~i~v~d~ 82 (172)
T cd01862 64 ----SLGVAFYRGADCCVLVYDV 82 (172)
T ss_pred ----hHHHHHhcCCCEEEEEEEC
Confidence 1112345667777776665
No 432
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.62 E-value=9e-08 Score=96.45 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=56.2
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCCCcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~~~~~~i 90 (406)
.-.+.+|..+++|||+|+||||+++.|... .+.++|.|.++|+++....+ +..||.++-..=
T Consensus 558 sF~v~pGktvAlVG~SGaGKSTimRlLfRf-----------fdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd 626 (790)
T KOG0056|consen 558 SFTVQPGKTVALVGPSGAGKSTIMRLLFRF-----------FDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND 626 (790)
T ss_pred eEEecCCcEEEEECCCCCchhHHHHHHHHH-----------hhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc
Confidence 345679999999999999999999999998 78899999999998765432 578888765555
Q ss_pred EEEeecccc
Q 015465 91 EIHDIAGLV 99 (406)
Q Consensus 91 ~lvD~~gl~ 99 (406)
++.+...+.
T Consensus 627 TI~yNIrya 635 (790)
T KOG0056|consen 627 TILYNIRYA 635 (790)
T ss_pred eeeeheeec
Confidence 555554443
No 433
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.59 E-value=7.5e-07 Score=77.96 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=48.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|||||||++.+.+.... ..++.|+.......+.+++.. ..++++|++|......
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDGQQ---------------CMLEILDTAGTEQFTA- 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECCEE---------------EEEEEEECCCccccch-
Confidence 47899999999999999999876432 233333322223344455432 2478999999643221
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+ ....++.+|+++.|++.
T Consensus 65 ---~---~~~~~~~~~~~ilv~d~ 82 (163)
T cd04136 65 ---M---RDLYIKNGQGFVLVYSI 82 (163)
T ss_pred ---H---HHHHhhcCCEEEEEEEC
Confidence 1 11234667777665554
No 434
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.59 E-value=8.5e-07 Score=77.85 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=46.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
+|+++|++|||||||++.+.+..... .++.++.....-.+.+++. ...+.++|++|......
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~~~-- 63 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSYRKQIEIDGE---------------VCLLDILDTAGQEEFSA-- 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhEEEEEEECCE---------------EEEEEEEECCCcccchH--
Confidence 68999999999999999999864322 2222222222222333332 12478999998543211
Q ss_pred CCCcchhhhhHHhhhchhhhhcc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|.++
T Consensus 64 -----~~~~~~~~~~~~i~v~d~ 81 (164)
T smart00173 64 -----MRDQYMRTGEGFLLVYSI 81 (164)
T ss_pred -----HHHHHHhhCCEEEEEEEC
Confidence 111234566666665554
No 435
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.58 E-value=7.5e-07 Score=81.00 Aligned_cols=81 Identities=21% Similarity=0.177 Sum_probs=50.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCcee-EEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G-~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
+++++|++|||||||++.+++.......++.++...... .+.+++.. ..+.++|+||-.....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 65 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVK---------------VKLQIWDTAGQERFRS- 65 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEE---------------EEEEEEeCCCcHHHHH-
Confidence 689999999999999999998765444444333222222 34455432 2478999999432111
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+|+
T Consensus 66 ------~~~~~~~~ad~~i~v~D~ 83 (191)
T cd04112 66 ------VTHAYYRDAHALLLLYDI 83 (191)
T ss_pred ------hhHHHccCCCEEEEEEEC
Confidence 112334567777776665
No 436
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.58 E-value=9.5e-07 Score=76.89 Aligned_cols=81 Identities=25% Similarity=0.279 Sum_probs=46.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|+|||||++.+++.... ..++.++.......+.+++.. ..+.++|++|.....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~-- 63 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYS-- 63 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEEECCEE---------------EEEEEEECCCCcchH--
Confidence 36899999999999999999986432 223322222222333444321 236789999853211
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|++.
T Consensus 64 -----~l~~~~~~~~~~~i~v~~~ 82 (162)
T cd04138 64 -----AMRDQYMRTGEGFLCVFAI 82 (162)
T ss_pred -----HHHHHHHhcCCEEEEEEEC
Confidence 1112334556666555443
No 437
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.58 E-value=5.8e-07 Score=83.47 Aligned_cols=82 Identities=23% Similarity=0.310 Sum_probs=50.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
++.++|++|+|||||++.+++........|..+.+...-.+.+++.. ...+.++|++|......
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~--------------~~~~~i~Dt~G~~~~~~-- 65 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNL--------------NVTLQVWDIGGQSIGGK-- 65 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCcHHHHH--
Confidence 68999999999999999999875432222322233333344444321 23478999998432211
Q ss_pred CCCcchhhhhHHhhhchhhhhcc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+ ....++.+|++++|+|+
T Consensus 66 --l---~~~~~~~ad~iilV~D~ 83 (215)
T cd04109 66 --M---LDKYIYGAHAVFLVYDV 83 (215)
T ss_pred --H---HHHHhhcCCEEEEEEEC
Confidence 1 12335788888887776
No 438
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.57 E-value=6.6e-08 Score=84.63 Aligned_cols=81 Identities=20% Similarity=0.171 Sum_probs=58.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
+++++|++|||||||++.+++.....+..|.+|.+.....+.+++.. ..+.++|+||.....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~D~~G~~~~~--- 63 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKT---------------VRLQLWDTAGQERFR--- 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEE---------------EEEEEEECCCcHHHH---
Confidence 68999999999999999999987777777777777777777776542 247899999943221
Q ss_pred CCCcchhhhhHHhhhchhhhhcc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|++++|.|.
T Consensus 64 ----~~~~~~~~~~~~ii~v~d~ 82 (161)
T cd01861 64 ----SLIPSYIRDSSVAVVVYDI 82 (161)
T ss_pred ----HHHHHHhccCCEEEEEEEC
Confidence 1122345667777666554
No 439
>PLN03232 ABC transporter C family member; Provisional
Probab=98.57 E-value=3.4e-08 Score=115.34 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=83.6
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEE-EcCCcchhhhhhhccCCCCcCceeEEEe--
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV-NIPDERFEWLCQLFKPKSAVPAFLEIHD-- 94 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i-~v~g~~~~~l~~~~~p~~~~~~~i~lvD-- 94 (406)
.-++++|+.++|+|++|||||||+++|+|. .+|.+|.+ .+.+. ..|.||...-..-++.|
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~-----------~~~~~G~i~~~~~~------Iayv~Q~p~Lf~gTIreNI 699 (1495)
T PLN03232 637 NLEIPVGSLVAIVGGTGEGKTSLISAMLGE-----------LSHAETSSVVIRGS------VAYVPQVSWIFNATVRENI 699 (1495)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CcccCCCEEEecCc------EEEEcCccccccccHHHHh
Confidence 355789999999999999999999999999 56666533 22211 12333321111111111
Q ss_pred ----------------eccccc-------cccC-----CCCCcchhhhhHHhhhchhhhhccc-CCCceEeecCCCCCCc
Q 015465 95 ----------------IAGLVR-------GAHE-----GQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 95 ----------------~~gl~~-------~~~~-----~~~l~~~~l~~l~~ad~ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
..++.. +... +..+..--.+++ .++||. .+++++++| ||++
T Consensus 700 ~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI-------aLARAly~~~~IlLLD---EptS 769 (1495)
T PLN03232 700 LFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRV-------SMARAVYSNSDIYIFD---DPLS 769 (1495)
T ss_pred hcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHH-------HHHHHHhcCCCEEEEc---CCcc
Confidence 111110 0000 000100011333 445555 699999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHH-HHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDV-EKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~-~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
.+|......+... .+... ......-.+|.... ...+|+| ..|++|++...|+.
T Consensus 770 aLD~~t~~~I~~~------~l~~~l~~kT~IlvTH~~~~-l~~aD~I-i~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 770 ALDAHVAHQVFDS------CMKDELKGKTRVLVTNQLHF-LPLMDRI-ILVSEGMIKEEGTF 823 (1495)
T ss_pred ccCHHHHHHHHHH------HhhhhhcCCEEEEEECChhh-HHhCCEE-EEEeCCEEEEecCH
Confidence 9998875332211 11111 00000111387765 4558888 78899998876654
No 440
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.57 E-value=6.1e-07 Score=79.27 Aligned_cols=82 Identities=21% Similarity=0.196 Sum_probs=47.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|||||||++.+++........|..+.+...-.+..++. ...+.++|++|......
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~g~~~~~~- 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDK---------------RVKLQIWDTAGQERYRT- 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE---------------EEEEEEEECCChHHHHH-
Confidence 47899999999999999999987542221111111111112222222 12478999999543211
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+|.
T Consensus 66 ------~~~~~~~~~~~~l~v~d~ 83 (165)
T cd01865 66 ------ITTAYYRGAMGFILMYDI 83 (165)
T ss_pred ------HHHHHccCCcEEEEEEEC
Confidence 112345678887777665
No 441
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.57 E-value=5.8e-08 Score=84.96 Aligned_cols=160 Identities=19% Similarity=0.317 Sum_probs=90.3
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----------h---hccCCCCc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----------Q---LFKPKSAV 86 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----------~---~~~p~~~~ 86 (406)
-..|+.+.++||+|+|||||++.|.-+ --|.+|...+.+..++... . +...|-..
T Consensus 25 ~~~getlvllgpsgagkssllr~lnll-----------e~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~l 93 (242)
T COG4161 25 CPEGETLVLLGPSGAGKSSLLRVLNLL-----------EMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNL 93 (242)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHH-----------hCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhcc
Confidence 457999999999999999999999877 3478888877665442211 0 11111122
Q ss_pred CceeEE----EeeccccccccCCC--CCcchhhhhHHhhhch--------------hhhhccc-CCCceEeecCCCCCCc
Q 015465 87 PAFLEI----HDIAGLVRGAHEGQ--GLGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 87 ~~~i~l----vD~~gl~~~~~~~~--~l~~~~l~~l~~ad~l--------------l~vvda~-~~~~il~ld~~~dP~~ 145 (406)
...+++ ++.|--..+.++.. ....+++.+++.+|.. +.+.||. ..|+++.+| +|+.
T Consensus 94 wphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfd---epta 170 (242)
T COG4161 94 WPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFD---EPTA 170 (242)
T ss_pred CchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeec---Cccc
Confidence 222222 22222222222111 0112233333333221 3455555 689999999 8888
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc-----ccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~-----~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.+|+.-..-+... + +.....+. +|..+....+..++ -++++|+++..|+
T Consensus 171 aldpeitaqvv~i-------i---kel~~tgitqvivthev~va~k~as~v-vyme~g~ive~g~ 224 (242)
T COG4161 171 ALDPEITAQIVSI-------I---KELAETGITQVIVTHEVEVARKTASRV-VYMENGHIVEQGD 224 (242)
T ss_pred ccCHHHHHHHHHH-------H---HHHHhcCceEEEEEeehhHHHhhhhhe-EeeecCeeEeecc
Confidence 7776532222111 1 11111221 38888888888888 8899999987654
No 442
>PLN03108 Rab family protein; Provisional
Probab=98.56 E-value=7.4e-07 Score=82.53 Aligned_cols=82 Identities=24% Similarity=0.183 Sum_probs=51.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.++.|+|++|+|||||++.+++........|..+.+...+.+.+.+.. ..+.++|++|......
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~---------------i~l~l~Dt~G~~~~~~- 70 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP---------------IKLQIWDTAGQESFRS- 70 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEE---------------EEEEEEeCCCcHHHHH-
Confidence 589999999999999999999875433322322222334556666543 2478999998542211
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+|.
T Consensus 71 ------~~~~~~~~ad~~vlv~D~ 88 (210)
T PLN03108 71 ------ITRSYYRGAAGALLVYDI 88 (210)
T ss_pred ------HHHHHhccCCEEEEEEEC
Confidence 112334566776665554
No 443
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.56 E-value=1e-06 Score=77.15 Aligned_cols=81 Identities=25% Similarity=0.272 Sum_probs=47.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
+++++|++|||||||++.+++........|..+.+.....+.+.+.. ..+.++|++|......
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~~~~-- 64 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKK---------------VKLAIWDTAGQERFRT-- 64 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEE---------------EEEEEEECCCchhhhh--
Confidence 68999999999999999999875433222221111112223333221 2478999999543211
Q ss_pred CCCcchhhhhHHhhhchhhhhcc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+ ....++.+|+++.|+|.
T Consensus 65 --~---~~~~~~~~d~~i~v~d~ 82 (161)
T cd01863 65 --L---TSSYYRGAQGVILVYDV 82 (161)
T ss_pred --h---hHHHhCCCCEEEEEEEC
Confidence 1 11334667777776654
No 444
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.56 E-value=8e-07 Score=81.47 Aligned_cols=81 Identities=17% Similarity=0.156 Sum_probs=47.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcC-CcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~-g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
+|.++|++|+|||||++.+++........|....+...-.+.++ +.. ..+.++|++|.....
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~---------------~~l~l~Dt~G~~~~~-- 64 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTV---------------VRLQLWDIAGQERFG-- 64 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCE---------------EEEEEEECCCchhhh--
Confidence 68999999999999999999764322111111111111223333 321 347899999963211
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|.
T Consensus 65 -----~~~~~~~~~a~~~ilv~D~ 83 (201)
T cd04107 65 -----GMTRVYYRGAVGAIIVFDV 83 (201)
T ss_pred -----hhHHHHhCCCCEEEEEEEC
Confidence 1112345778888777665
No 445
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.54 E-value=1.3e-07 Score=84.97 Aligned_cols=56 Identities=30% Similarity=0.520 Sum_probs=45.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl 98 (406)
....++++|.||+|||||+|+|+|... .+++.|++|...+... +. ..+.++|+||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~--~~------------------~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH--LD------------------KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE--eC------------------CCEEEEECcCC
Confidence 346899999999999999999999866 6689999998655433 22 13889999995
No 446
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.53 E-value=1.1e-07 Score=81.40 Aligned_cols=85 Identities=22% Similarity=0.234 Sum_probs=59.8
Q ss_pred EEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCCCC
Q 015465 29 IVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQG 107 (406)
Q Consensus 29 liG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~~~ 107 (406)
|+|++|||||||+|.|++.... .++.+.+|..+........+ ...+.++|+||+.........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Dt~g~~~~~~~~~~ 64 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP----------------LGPVVLIDTPGIDEAGGLGRE 64 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC----------------CCcEEEEECCCCCccccchhh
Confidence 5899999999999999998665 57778888777766665542 124899999998765443222
Q ss_pred CcchhhhhHHhhhchhhhhccc
Q 015465 108 LGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 108 l~~~~l~~l~~ad~ll~vvda~ 129 (406)
........++.+|++++++++.
T Consensus 65 ~~~~~~~~~~~~d~il~v~~~~ 86 (163)
T cd00880 65 REELARRVLERADLILFVVDAD 86 (163)
T ss_pred HHHHHHHHHHhCCEEEEEEeCC
Confidence 1223344567778877777664
No 447
>PRK09866 hypothetical protein; Provisional
Probab=98.53 E-value=7.3e-07 Score=93.52 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTI 59 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~ 59 (406)
..++++|++|+|||||+|+|+|..+-. ++.|+++.
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 688999999999999999999998744 57888876
No 448
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.53 E-value=3.3e-08 Score=100.68 Aligned_cols=66 Identities=17% Similarity=0.425 Sum_probs=47.0
Q ss_pred CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHH-HhhhccccchHHHHHHHHHHHHHhhCCCc-cccCCCC
Q 015465 130 EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK-SMKRSNDKQLKIEHELCQRVKAWLQDGKD-VRLGDWK 207 (406)
Q Consensus 130 ~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~-~~~~~~~h~~~~v~~l~~~i~~~L~~g~~-~~~~~~t 207 (406)
.+|+++.+| ||++++|+-. +.+++..+.++.. .+-... |....+..+|+.| ..|..++. .+.|+++
T Consensus 238 ~kP~LLLLD---EPtnhLDleA-------~~wLee~L~k~d~~~lVi~s-h~QDfln~vCT~I-i~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 238 QKPDLLLLD---EPTNHLDLEA-------IVWLEEYLAKYDRIILVIVS-HSQDFLNGVCTNI-IHLDNKKLIYYEGNYD 305 (614)
T ss_pred cCCCEEEec---CCccCCCHHH-------HHHHHHHHHhccCceEEEEe-cchhhhhhHhhhh-heecccceeeecCCHH
Confidence 599999999 9999888765 2345555655544 121222 8999999999999 77777774 4557654
No 449
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.52 E-value=2e-06 Score=75.72 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=48.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|.+|||||||++.+..... ..+++.|+.....-.+.+.+.. ..+.++|++|......
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 64 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQ---------------CMLEILDTAGTEQFTA- 64 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEE---------------EEEEEEECCCcccchh-
Confidence 3789999999999999999885422 2334444332222334444332 2468999999643221
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|.|.
T Consensus 65 ------~~~~~~~~~d~~ilv~d~ 82 (164)
T cd04175 65 ------MRDLYMKNGQGFVLVYSI 82 (164)
T ss_pred ------HHHHHHhhCCEEEEEEEC
Confidence 112345677777776554
No 450
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.51 E-value=4.7e-08 Score=93.90 Aligned_cols=90 Identities=30% Similarity=0.472 Sum_probs=70.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
+-..|++||-+|||||||+|+||+...-..+..|.|++|+.-....+..+ .+-+.||.|+....
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~----------------~vlltDTvGFisdL 240 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN----------------FVLLTDTVGFISDL 240 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc----------------EEEEeechhhhhhC
Confidence 34699999999999999999999776666788999999998777776543 36789999998654
Q ss_pred cCCCCCcchh---hhhHHhhhchhhhhcccC
Q 015465 103 HEGQGLGNSF---LSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 103 ~~~~~l~~~~---l~~l~~ad~ll~vvda~~ 130 (406)
.. .+...| ++.+..+|+|+||+|.++
T Consensus 241 P~--~LvaAF~ATLeeVaeadlllHvvDiSh 269 (410)
T KOG0410|consen 241 PI--QLVAAFQATLEEVAEADLLLHVVDISH 269 (410)
T ss_pred cH--HHHHHHHHHHHHHhhcceEEEEeecCC
Confidence 32 233333 567788999999999863
No 451
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.51 E-value=2.2e-07 Score=82.02 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=37.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g 70 (406)
+....++.|+.+.+=||+|+|||||+++|-+. ..|++|.|.+..
T Consensus 29 ~vslsV~aGECvvL~G~SG~GKStllr~LYaN-----------Y~~d~G~I~v~H 72 (235)
T COG4778 29 NVSLSVNAGECVVLHGPSGSGKSTLLRSLYAN-----------YLPDEGQILVRH 72 (235)
T ss_pred ceeEEecCccEEEeeCCCCCcHHHHHHHHHhc-----------cCCCCceEEEEe
Confidence 34456788999999999999999999999998 679999988743
No 452
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.50 E-value=2.5e-06 Score=74.86 Aligned_cols=81 Identities=21% Similarity=0.184 Sum_probs=48.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|.+|+|||||++.+.+..... .++.++.......+.+++.. ..++++|++|......
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 64 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE-KYDPTIEDFYRKEIEVDSSP---------------SVLEILDTAGTEQFAS- 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCchhheEEEEEEECCEE---------------EEEEEEECCCcccccc-
Confidence 378999999999999998887654322 22222222223345555432 2478999999543221
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|.|.
T Consensus 65 ------~~~~~~~~ad~~i~v~d~ 82 (163)
T cd04176 65 ------MRDLYIKNGQGFIVVYSL 82 (163)
T ss_pred ------hHHHHHhhCCEEEEEEEC
Confidence 111235677777766554
No 453
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.49 E-value=9.1e-08 Score=104.17 Aligned_cols=88 Identities=22% Similarity=0.242 Sum_probs=66.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..|+|+|.+|+|||||||.|+|.... +++.|++|.+...+...+.+. .+.++||+|+.....
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~-----------------~~~liDT~G~~~~~~ 338 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGT-----------------DFKLVDTGGWEADVE 338 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCE-----------------EEEEEeCCCcCCCCc
Confidence 57999999999999999999998654 478999998887777776654 378999999864321
Q ss_pred C-CCCCcchhhhhHHhhhchhhhhccc
Q 015465 104 E-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 104 ~-~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
. ...+..+....++.+|++++|+|+.
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~ 365 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQ 365 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 1 1112233345578899999999985
No 454
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.49 E-value=1.4e-06 Score=77.01 Aligned_cols=80 Identities=25% Similarity=0.263 Sum_probs=48.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCcee--EEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA--RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G--~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
.++.++|++|+|||||++.+.+.... ..+|.++ ..+.. .+.+.+.. ..+.++|++|.....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~-~~~~~t~-~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~ 65 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTI-GVEFGTRIIEVNGQK---------------IKLQIWDTAGQERFR 65 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCccc-ceeEEEEEEEECCEE---------------EEEEEEECCCcHHHH
Confidence 47899999999999999999876432 2222221 11111 23333322 247899999854221
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. .....++.+|+++.|+|.
T Consensus 66 ~-------~~~~~~~~~~~~ilv~d~ 84 (166)
T cd04122 66 A-------VTRSYYRGAAGALMVYDI 84 (166)
T ss_pred H-------HHHHHhcCCCEEEEEEEC
Confidence 1 112345778888777665
No 455
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.48 E-value=2.9e-06 Score=74.83 Aligned_cols=81 Identities=27% Similarity=0.315 Sum_probs=50.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
+++++|++|+|||||++.+.+... ...++.++.......+.+++.. ..++++|++|......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~~-- 62 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDGEQ---------------VSLEILDTAGQQQADT-- 62 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECCEE---------------EEEEEEECCCCccccc--
Confidence 478999999999999988876432 2344444422223344454432 2478999999764211
Q ss_pred CCCcchhhhhHHhhhchhhhhcc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.+.|+
T Consensus 63 ----~~~~~~~~~~d~~i~v~d~ 81 (165)
T cd04146 63 ----EQLERSIRWADGFVLVYSI 81 (165)
T ss_pred ----chHHHHHHhCCEEEEEEEC
Confidence 1122456778888877665
No 456
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.47 E-value=2.9e-07 Score=81.15 Aligned_cols=55 Identities=27% Similarity=0.439 Sum_probs=42.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl 98 (406)
+..++++|+||+|||||+|+|.|... .+++.|++|.... .+..+ ..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITLM------------------KRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEcC------------------CCEEEEECcCC
Confidence 56789999999999999999999765 4588888886532 23322 23789999995
No 457
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=6.6e-07 Score=99.70 Aligned_cols=178 Identities=15% Similarity=0.242 Sum_probs=105.6
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh--hh--hhccCCCCc-CceeE
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LC--QLFKPKSAV-PAFLE 91 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~--l~--~~~~p~~~~-~~~i~ 91 (406)
..|-+++|...||+|.+|||||||+|.|+|.. |.-...|.|.++|.+... ++ .+|..|..+ -+.++
T Consensus 810 V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~---------t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 810 VSGAFKPGVLTALMGESGAGKTTLLDVLAGRK---------TGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred CceEecCCceeehhcCCCCchHHHHHHHhcCc---------ccceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 45667899999999999999999999999983 345678999999987653 11 245555432 23455
Q ss_pred EEeeccccccccCCC--------CCcchhhhhH---Hhhhchhhh----------------hcccCCC-ceEeecCCCCC
Q 015465 92 IHDIAGLVRGAHEGQ--------GLGNSFLSHI---RAVDGIFHV----------------LRAFEDP-DIIHVDDSVDP 143 (406)
Q Consensus 92 lvD~~gl~~~~~~~~--------~l~~~~l~~l---~~ad~ll~v----------------vda~~~~-~il~ld~~~dP 143 (406)
+.+..-+........ ...+++.+.+ .-+|+|+-+ |....+| .+++|| ||
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLD---EP 957 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLD---EP 957 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEec---CC
Confidence 555444332111100 0111111111 234555443 1123568 678999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccc-----cchH-HHHHHHHHHHHHh-hCCCccccCCCChhHHHHHHH
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLK-IEHELCQRVKAWL-QDGKDVRLGDWKAADIEILNT 216 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~-----h~~~-~v~~l~~~i~~~L-~~g~~~~~~~~t~~e~e~i~~ 216 (406)
+++||.-....++. .+++++..+.+ |+.. .+-+..|++ -+| ..|+.++.|++.+....+|+-
T Consensus 958 TSGLDsqaA~~i~~----------~lrkla~tGqtIlCTIHQPS~~ife~FD~L-LLLkrGGqtVY~G~lG~~s~~li~Y 1026 (1391)
T KOG0065|consen 958 TSGLDSQAAAIVMR----------FLRKLADTGQTILCTIHQPSIDIFEAFDEL-LLLKRGGQTVYFGPLGENSSKLIEY 1026 (1391)
T ss_pred CCCccHHHHHHHHH----------HHHHHHhcCCeEEEEecCCcHHHHHHHhHH-HHHhcCCeEEEecCcccccHHHHHH
Confidence 99999887533322 12222322222 6543 456677888 555 456778888887666555543
Q ss_pred h
Q 015465 217 F 217 (406)
Q Consensus 217 ~ 217 (406)
+
T Consensus 1027 F 1027 (1391)
T KOG0065|consen 1027 F 1027 (1391)
T ss_pred H
Confidence 3
No 458
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.47 E-value=2e-06 Score=76.83 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~ 49 (406)
.++.++|++|+|||||++.+.+...
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~ 29 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKF 29 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999987643
No 459
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.47 E-value=1.7e-06 Score=76.63 Aligned_cols=60 Identities=27% Similarity=0.305 Sum_probs=37.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~ 99 (406)
.++.++|++|+|||||++.+.+........|..+.+...-.+.+.+.. ..+.++|++|..
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~ 65 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHF---------------VTLQIWDTAGQE 65 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeE---------------EEEEEEeCCChH
Confidence 689999999999999999998765433222211111112233444432 247899999853
No 460
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.46 E-value=2.2e-06 Score=75.57 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=45.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCcee--EEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA--RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G--~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
+++++|.+|+|||||++.+.+........ .|..++.. .+.+++. ...+.++|++|......
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 64 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQL--STYALTLYKHNAKFEGK---------------TILVDFWDTAGQERFQT 64 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC--CceeeEEEEEEEEECCE---------------EEEEEEEeCCCchhhhh
Confidence 68999999999999999998764321111 11111111 1223322 12478999998543211
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|++++|+|+
T Consensus 65 -------~~~~~~~~~d~~i~v~d~ 82 (161)
T cd04124 65 -------MHASYYHKAHACILVFDV 82 (161)
T ss_pred -------hhHHHhCCCCEEEEEEEC
Confidence 112345677887777665
No 461
>PRK04213 GTP-binding protein; Provisional
Probab=98.46 E-value=2.2e-07 Score=84.99 Aligned_cols=55 Identities=33% Similarity=0.371 Sum_probs=43.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~ 99 (406)
..+++++|++|+|||||+|.|+|.....+..|++|..+.. +.+. .+.++||||+.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~-------------------~~~l~Dt~G~~ 63 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG-------------------DFILTDLPGFG 63 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec-------------------ceEEEeCCccc
Confidence 3689999999999999999999987666778888776543 2221 27899999974
No 462
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.45 E-value=2.1e-07 Score=84.73 Aligned_cols=56 Identities=29% Similarity=0.336 Sum_probs=44.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC---------CCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEE
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLA---------IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIH 93 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~---------~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lv 93 (406)
.+..++++|.+|+|||||+|+|.+.. ..++..|+||+.+....+.. .+.++
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~--------------------~~~~~ 185 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN--------------------GKKLY 185 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC--------------------CCEEE
Confidence 35689999999999999999999854 24578899998887555421 26899
Q ss_pred eeccc
Q 015465 94 DIAGL 98 (406)
Q Consensus 94 D~~gl 98 (406)
||||+
T Consensus 186 DtPG~ 190 (190)
T cd01855 186 DTPGI 190 (190)
T ss_pred eCcCC
Confidence 99995
No 463
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.45 E-value=3.6e-07 Score=80.43 Aligned_cols=56 Identities=29% Similarity=0.528 Sum_probs=45.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl 98 (406)
.+..++++|.||+|||||+|+|++... .+++.|++|..+....+ . ..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL--D------------------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe--c------------------CCEEEEECCCC
Confidence 467899999999999999999999764 56888999988765433 2 13789999995
No 464
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.45 E-value=2.4e-07 Score=83.75 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=54.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+++|+|++|||||||++.+++.... ....|..|+.+.+.+.+. .+.++|++|.....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~~-----------------~~~l~D~~G~~~~~ 77 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGNI-----------------KFKTFDLGGHEQAR 77 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECCE-----------------EEEEEECCCCHHHH
Confidence 3567899999999999999999986532 223467778888877654 37899999853211
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
..+...++.+|++++|+|+
T Consensus 78 -------~~~~~~~~~ad~iilV~D~ 96 (190)
T cd00879 78 -------RLWKDYFPEVDGIVFLVDA 96 (190)
T ss_pred -------HHHHHHhccCCEEEEEEEC
Confidence 1122345667777776665
No 465
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.45 E-value=1.8e-07 Score=82.40 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=52.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAE----NFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~----~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
.++++|++|+|||||++.|++...... ..+.+|+..+.+.+.+++. .+.++|+||....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~ 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNA-----------------RLKFWDLGGQESL 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCE-----------------EEEEEECCCChhh
Confidence 378999999999999999988643221 2234455566666666543 4899999986432
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. ......++.+|++++|+|+
T Consensus 64 ~-------~~~~~~~~~~~~~v~vvd~ 83 (167)
T cd04160 64 R-------SLWDKYYAECHAIIYVIDS 83 (167)
T ss_pred H-------HHHHHHhCCCCEEEEEEEC
Confidence 1 1122345677777777665
No 466
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=1.2e-06 Score=77.79 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=37.3
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCC
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g 70 (406)
...+.+|+..||+|.+|||||||+++|++. +.|+.|.+.+..
T Consensus 26 sF~l~PGeVLgiVGESGSGKtTLL~~is~r-----------l~p~~G~v~Y~~ 67 (258)
T COG4107 26 SFDLYPGEVLGIVGESGSGKTTLLKCISGR-----------LTPDAGTVTYRM 67 (258)
T ss_pred ceeecCCcEEEEEecCCCcHHhHHHHHhcc-----------cCCCCCeEEEEc
Confidence 345779999999999999999999999998 789999998754
No 467
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.43 E-value=5.7e-07 Score=82.69 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=25.0
Q ss_pred ccccccCCCc-EEEEEcCCCCCHHHHHHHHH
Q 015465 16 PILGRFSSHL-KIGIVGLPNVGKSTLFNTLT 45 (406)
Q Consensus 16 ~~~g~v~~g~-~igliG~nGaGKSTLln~Lt 45 (406)
+..-.+..|. +++|.||||+|||||++++.
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3444567775 69999999999999999998
No 468
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.42 E-value=2e-07 Score=95.13 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=33.4
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI 68 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v 68 (406)
+..+..+++|||||+|||||+++++|. +.|+.|.+.-
T Consensus 413 id~~srvAlVGPNG~GKsTLlKl~~gd-----------l~p~~G~vs~ 449 (614)
T KOG0927|consen 413 IDLDSRVALVGPNGAGKSTLLKLITGD-----------LQPTIGMVSR 449 (614)
T ss_pred cCcccceeEecCCCCchhhhHHHHhhc-----------cccccccccc
Confidence 667789999999999999999999999 7899998753
No 469
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.42 E-value=4.5e-07 Score=86.36 Aligned_cols=64 Identities=25% Similarity=0.290 Sum_probs=51.0
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~ 99 (406)
......|+++|++|+|||||+|+|+|... .++.++.+|..+........|. .+.++||||+.
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~-----------------~i~vIDTPGl~ 90 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGF-----------------KLNIIDTPGLL 90 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe-----------------EEEEEECCCcC
Confidence 44568999999999999999999999875 3467777787777666665553 38999999988
Q ss_pred cc
Q 015465 100 RG 101 (406)
Q Consensus 100 ~~ 101 (406)
..
T Consensus 91 ~~ 92 (249)
T cd01853 91 ES 92 (249)
T ss_pred cc
Confidence 55
No 470
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.42 E-value=3e-06 Score=76.98 Aligned_cols=80 Identities=23% Similarity=0.221 Sum_probs=48.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
+++++|.+|+|||||++.+++.... ..++.++.....-.+.+++.. ..++++|++|......
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~-- 62 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVVDGQP---------------CMLEVLDTAGQEEYTA-- 62 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEECCEE---------------EEEEEEECCCchhhHH--
Confidence 3789999999999999999865432 223333322222233444432 2478999999543221
Q ss_pred CCCcchhhhhHHhhhchhhhhcc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|.|.
T Consensus 63 -----~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 63 -----LRDQWIREGEGFILVYSI 80 (190)
T ss_pred -----HHHHHHHhCCEEEEEEEC
Confidence 112345778888777665
No 471
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.42 E-value=3.4e-06 Score=75.30 Aligned_cols=81 Identities=23% Similarity=0.193 Sum_probs=49.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
++.++|.+|+|||||++.+.+........|-.......-.+.+.|.. ..+.++|++|..+...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~-- 64 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVP---------------FSLQLWDTAGQERFKC-- 64 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEeCCChHHHHh--
Confidence 68899999999999999999874322211111112222233444432 3589999998643221
Q ss_pred CCCcchhhhhHHhhhchhhhhcc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|.|+
T Consensus 65 -----~~~~~~~~ad~~ilv~d~ 82 (170)
T cd04108 65 -----IASTYYRGAQAIIIVFDL 82 (170)
T ss_pred -----hHHHHhcCCCEEEEEEEC
Confidence 112345778888887766
No 472
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.41 E-value=2.6e-07 Score=81.96 Aligned_cols=74 Identities=26% Similarity=0.347 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCcee----EEEcCCcchhhhhhhccCCCCcCceeEEEeecccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA----RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G----~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~ 99 (406)
..+++|+|+||||||||++.|+|... ++..|+.| .+.+.+. .+.++|++|..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~-------~~~~~t~g~~~~~i~~~~~-----------------~~~~~D~~G~~ 69 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDI-------SHITPTQGFNIKTVQSDGF-----------------KLNVWDIGGQR 69 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCC-------cccCCCCCcceEEEEECCE-----------------EEEEEECCCCH
Confidence 57899999999999999999998732 12334444 5555442 37899999853
Q ss_pred ccccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 100 RGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 100 ~~~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
... ..+...++.+|+++.|+|+
T Consensus 70 ~~~-------~~~~~~~~~~~~ii~v~D~ 91 (173)
T cd04155 70 AIR-------PYWRNYFENTDCLIYVIDS 91 (173)
T ss_pred HHH-------HHHHHHhcCCCEEEEEEeC
Confidence 211 1122334566777666655
No 473
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.41 E-value=2e-07 Score=105.54 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=90.3
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeec
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~ 96 (406)
.--.++.|+.+||+|+.|||||||+.+|+|. .+..+|.+.++|. ..|.||..=-..-++-|+.
T Consensus 540 In~~i~~G~lvaVvG~vGsGKSSLL~AiLGE-----------m~~~sG~v~v~gs------iaYv~Q~pWI~ngTvreNI 602 (1381)
T KOG0054|consen 540 INFEIKKGQLVAVVGPVGSGKSSLLSAILGE-----------MPKLSGSVAVNGS------VAYVPQQPWIQNGTVRENI 602 (1381)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHhcC-----------cccccceEEEcCe------EEEeccccHhhCCcHHHhh
Confidence 3345789999999999999999999999999 8899999999885 2344432100011111211
Q ss_pred cccccccC-----------------------CCCCcchhhhhHHhhhchhhhhccc-CCCceEeecCCCCCCchHHHHHH
Q 015465 97 GLVRGAHE-----------------------GQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (406)
Q Consensus 97 gl~~~~~~-----------------------~~~l~~~~l~~l~~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~ 152 (406)
-++....+ ....|++=...=..-.+-+.++||- ++.++..+| ||++.+|.-..
T Consensus 603 LFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLD---DplSAVDahvg 679 (1381)
T KOG0054|consen 603 LFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLD---DPLSAVDAHVG 679 (1381)
T ss_pred hcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEc---CcchhhhHhhh
Confidence 11110000 0001111000001111224455665 699999999 99988877542
Q ss_pred HHhhhhHHHHHHHHHHH-HHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 153 ELRLKDIEFMERRIEDV-EKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 153 el~~~di~~l~k~l~~~-~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
.+. .++.+..+ +.+...-.+|... ...-+|.| .+|++|++...|+++
T Consensus 680 ---~~i---f~~ci~~~L~~KT~ILVTHql~-~L~~ad~I-ivl~~G~I~~~Gty~ 727 (1381)
T KOG0054|consen 680 ---KHI---FEECIRGLLRGKTVILVTHQLQ-FLPHADQI-IVLKDGKIVESGTYE 727 (1381)
T ss_pred ---HHH---HHHHHHhhhcCCEEEEEeCchh-hhhhCCEE-EEecCCeEecccCHH
Confidence 111 22222111 1100011237443 34556777 788999999888876
No 474
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.41 E-value=5.3e-06 Score=73.45 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~ 48 (406)
.+++++|++|||||||++.+.+..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998764
No 475
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.41 E-value=3.4e-07 Score=82.86 Aligned_cols=84 Identities=25% Similarity=0.389 Sum_probs=57.9
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccc
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl 98 (406)
|.-....+++++|++|||||||++.+++.... . ..+|..++.+.+.+.+. .+.++|++|.
T Consensus 12 ~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~-----------------~~~~~D~~G~ 71 (184)
T smart00178 12 GLWNKHAKILFLGLDNAGKTTLLHMLKNDRLA--Q-HQPTQHPTSEELAIGNI-----------------KFTTFDLGGH 71 (184)
T ss_pred ccccccCEEEEECCCCCCHHHHHHHHhcCCCc--c-cCCccccceEEEEECCE-----------------EEEEEECCCC
Confidence 33345679999999999999999999986432 1 13456666677666543 3789999996
Q ss_pred cccccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 99 VRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 99 ~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
..... .+...++.+|++++|+|+.
T Consensus 72 ~~~~~-------~~~~~~~~ad~ii~vvD~~ 95 (184)
T smart00178 72 QQARR-------LWKDYFPEVNGIVYLVDAY 95 (184)
T ss_pred HHHHH-------HHHHHhCCCCEEEEEEECC
Confidence 53211 2224457788888887763
No 476
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.40 E-value=7.5e-07 Score=82.07 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLA 48 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~ 48 (406)
.+||+|++|+|||||+.+|++..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~ 24 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW 24 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999873
No 477
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.40 E-value=3.5e-07 Score=78.95 Aligned_cols=76 Identities=30% Similarity=0.418 Sum_probs=46.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCCC
Q 015465 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQ 106 (406)
Q Consensus 27 igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~~ 106 (406)
++|+|++|||||||+|.|++........| |...+...+...+ ..+.++|++|.....
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~---- 58 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKGN-----------------VTLKVWDLGGQPRFR---- 58 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEECC-----------------EEEEEEECCCCHhHH----
Confidence 78999999999999999999854332222 2222223333221 247899999853221
Q ss_pred CCcchhhhhHHhhhchhhhhcc
Q 015465 107 GLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 107 ~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 59 ---~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 59 ---SMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred ---HHHHHHHhcCCEEEEEEEC
Confidence 1122345667777776655
No 478
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.39 E-value=2.2e-07 Score=83.68 Aligned_cols=59 Identities=29% Similarity=0.272 Sum_probs=43.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC-C-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLA-I-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~-~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
....++|+|++|+|||||+|.|++.. . .+++.+++|..+....+ + ..+.++|+||+..
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~liDtpG~~~ 76 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N------------------DGFRLVDLPGYGY 76 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C------------------CcEEEEeCCCCcc
Confidence 34689999999999999999999974 2 34667777765543322 1 1378999999764
Q ss_pred c
Q 015465 101 G 101 (406)
Q Consensus 101 ~ 101 (406)
.
T Consensus 77 ~ 77 (179)
T TIGR03598 77 A 77 (179)
T ss_pred c
Confidence 3
No 479
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.38 E-value=8.1e-06 Score=77.70 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=48.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
++.++|.+|+|||||++.+.+..... .+..|+.+.....+.+++.. ..+.++|++|......
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~-~y~pTi~d~~~k~~~i~~~~---------------~~l~I~Dt~G~~~~~~-- 63 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE-QYTPTIEDFHRKLYSIRGEV---------------YQLDILDTSGNHPFPA-- 63 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC-CCCCChhHhEEEEEEECCEE---------------EEEEEEECCCChhhhH--
Confidence 68999999999999999998654322 33333323333345555432 2478999998543211
Q ss_pred CCCcchhhhhHHhhhchhhhhcc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+ ....+..+|+++.|.|.
T Consensus 64 --~---~~~~~~~ad~iIlVfdv 81 (247)
T cd04143 64 --M---RRLSILTGDVFILVFSL 81 (247)
T ss_pred --H---HHHHhccCCEEEEEEeC
Confidence 0 01124566777666554
No 480
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.38 E-value=3.9e-07 Score=80.17 Aligned_cols=83 Identities=18% Similarity=0.051 Sum_probs=53.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
.++|+|++|+|||||+++|++........+++|.......+..... -...+.++||||.....
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~iiDtpG~~~~~--- 64 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVL--------------KIPGITFIDTPGHEAFT--- 64 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccC--------------CcceEEEEeCCCcHHHH---
Confidence 5899999999999999999987655444555565544444443210 01248899999964211
Q ss_pred CCCcchhhhhHHhhhchhhhhccc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
......++.+|+++.|+|+.
T Consensus 65 ----~~~~~~~~~~d~il~v~d~~ 84 (168)
T cd01887 65 ----NMRARGASLTDIAILVVAAD 84 (168)
T ss_pred ----HHHHHHHhhcCEEEEEEECC
Confidence 11123346778888877763
No 481
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.37 E-value=4.9e-06 Score=74.16 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=51.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccC-CceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-PNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~-p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
..++.++|.+|+|||||++.+++....+.++..|+.. .....+.++|.. ..+.++|++|.....
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~---------------~~l~~~d~~g~~~~~ 68 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQE---------------KYLILREVGEDEVAI 68 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeE---------------EEEEEEecCCccccc
Confidence 4689999999999999999999875442333333211 112234555532 236788888754321
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. + ....++.+|++++|+|+
T Consensus 69 ~----~---~~~~~~~~d~~llv~d~ 87 (169)
T cd01892 69 L----L---NDAELAACDVACLVYDS 87 (169)
T ss_pred c----c---chhhhhcCCEEEEEEeC
Confidence 1 1 11335788998887765
No 482
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.36 E-value=3e-07 Score=86.28 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=26.1
Q ss_pred CcCccccccCCCcEEEEEcCCCCCHHHHH-HHH
Q 015465 13 AERPILGRFSSHLKIGIVGLPNVGKSTLF-NTL 44 (406)
Q Consensus 13 ~~~~~~g~v~~g~~igliG~nGaGKSTLl-n~L 44 (406)
.-.+....+++|+++||+|+||||||||+ ..+
T Consensus 10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred ccccceeecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 34455667899999999999999999995 444
No 483
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.36 E-value=5.9e-06 Score=75.70 Aligned_cols=80 Identities=29% Similarity=0.330 Sum_probs=46.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCc--eeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN--EARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~--~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
.+|.++|++|+|||||++.+.+....... .+|...+ .-.+.+.+.. ..+.++|++|.....
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~---------------~~l~l~D~~G~~~~~ 69 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVEINGER---------------VKLQIWDTAGQERFR 69 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCc--CccccceeEEEEEEECCEE---------------EEEEEEeCCCchhHH
Confidence 58999999999999999999987432211 1122111 1223333321 247899999853211
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+++++.|+|+
T Consensus 70 -------~~~~~~~~~a~~iilv~D~ 88 (199)
T cd04110 70 -------TITSTYYRGTHGVIVVYDV 88 (199)
T ss_pred -------HHHHHHhCCCcEEEEEEEC
Confidence 1112344567777666554
No 484
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.36 E-value=5.7e-06 Score=76.71 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=46.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcC-CcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~-g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
.+|.++|++|+|||||++.+++........|..+.+...-.+.+. +. ...+.++|++|......
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~---------------~~~l~i~Dt~G~~~~~~ 67 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGV---------------RIKLQLWDTAGQERFRS 67 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCC---------------EEEEEEEeCCcchhHHH
Confidence 579999999999999999999875432211111111111122222 21 12488999999542211
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|.|.
T Consensus 68 -------~~~~~~~~~d~iilv~D~ 85 (211)
T cd04111 68 -------ITRSYYRNSVGVLLVFDI 85 (211)
T ss_pred -------HHHHHhcCCcEEEEEEEC
Confidence 112334667777666554
No 485
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.36 E-value=7.6e-06 Score=71.40 Aligned_cols=58 Identities=28% Similarity=0.303 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccc
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~ 99 (406)
+++++|++|||||||++.+++.... ..+..++.......+.+++.. ..+.++|++|..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~ 59 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGED---------------VQLNILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEECCEE---------------EEEEEEECCChh
Confidence 6899999999999999999976432 233333322222223333321 237899999854
No 486
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.34 E-value=2.8e-07 Score=78.92 Aligned_cols=59 Identities=36% Similarity=0.336 Sum_probs=45.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl 98 (406)
.+++++|.+|||||||++.+++........|++|.......+.+++.. ..+.++|+||.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKT---------------YKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEE---------------EEEEEEECCCc
Confidence 478999999999999999999988555667777777666666665521 24789999994
No 487
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.34 E-value=8.5e-06 Score=76.14 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=45.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcccc--CCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI--EPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~--~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
+|+++|++|+|||||++.+++.......++. |. +...-.+.+.+. ...+.++|++|...
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~-t~~~~~~~~~i~~~~~---------------~~~l~i~Dt~G~~~--- 62 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDA-SGDDDTYERTVSVDGE---------------ESTLVVIDHWEQEM--- 62 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCC-CccccceEEEEEECCE---------------EEEEEEEeCCCcch---
Confidence 6899999999999999999755332122221 11 112223444443 23588999999651
Q ss_pred CCCCCcchhhhhHH-hhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIR-AVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~-~ad~ll~vvda 128 (406)
.... ...+ .+|+++.|+++
T Consensus 63 ---~~~~---~~~~~~ad~iilV~d~ 82 (221)
T cd04148 63 ---WTED---SCMQYQGDAFVVVYSV 82 (221)
T ss_pred ---HHHh---HHhhcCCCEEEEEEEC
Confidence 0111 1223 67777776655
No 488
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.33 E-value=1.1e-06 Score=85.60 Aligned_cols=61 Identities=33% Similarity=0.451 Sum_probs=49.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
..+..++++|.||+|||||+|+|+|... .+++.|++|..++ .+.+.+ .+.++||||+..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~------------------~~~l~DtPGi~~ 178 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKLGK------------------GLELLDTPGILW 178 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEeCC------------------cEEEEECCCcCC
Confidence 4567899999999999999999999876 6689999998764 344432 378999999965
Q ss_pred cc
Q 015465 101 GA 102 (406)
Q Consensus 101 ~~ 102 (406)
..
T Consensus 179 ~~ 180 (287)
T PRK09563 179 PK 180 (287)
T ss_pred CC
Confidence 43
No 489
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.32 E-value=6e-07 Score=77.35 Aligned_cols=81 Identities=22% Similarity=0.222 Sum_probs=50.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
+++++|++|||||||++.+++........+..+.+.....+.+.+. ...+.++|+||......
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~-- 64 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGK---------------TVKLQIWDTAGQERFRS-- 64 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCE---------------EEEEEEEecCChHHHHH--
Confidence 6899999999999999999988654443333232223333333322 12478999999632211
Q ss_pred CCCcchhhhhHHhhhchhhhhcc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|++++|+++
T Consensus 65 -----~~~~~~~~~d~ii~v~d~ 82 (159)
T cd00154 65 -----ITPSYYRGAHGAILVYDI 82 (159)
T ss_pred -----HHHHHhcCCCEEEEEEEC
Confidence 122345667887777665
No 490
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.32 E-value=6.3e-07 Score=78.41 Aligned_cols=81 Identities=25% Similarity=0.259 Sum_probs=50.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
+++++|++|||||||++.+++........|..+.+...-.+.+.+.. ..+.++|++|......
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~~-- 64 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKR---------------VKLQIWDTAGQERFRS-- 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEECCChHHHHH--
Confidence 68999999999999999999886543333333333333344454431 2478999999532211
Q ss_pred CCCcchhhhhHHhhhchhhhhcc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+|+
T Consensus 65 -----~~~~~~~~~d~~ilv~d~ 82 (164)
T smart00175 65 -----ITSSYYRGAVGALLVYDI 82 (164)
T ss_pred -----HHHHHhCCCCEEEEEEEC
Confidence 112334567777776655
No 491
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.31 E-value=3.5e-07 Score=86.54 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=62.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
+...+-|.|.+|||||+|+|+|.+... +++..+.+|..++.-...+++ ..+.++|+||+..+
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-----------------~~l~lwDtPG~gdg 100 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-----------------ENLVLWDTPGLGDG 100 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-----------------cceEEecCCCcccc
Confidence 446677999999999999999996544 334444455444433334443 24899999999987
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
..+.......+.+.+...|+++.++++.
T Consensus 101 ~~~D~~~r~~~~d~l~~~DLvL~l~~~~ 128 (296)
T COG3596 101 KDKDAEHRQLYRDYLPKLDLVLWLIKAD 128 (296)
T ss_pred hhhhHHHHHHHHHHhhhccEEEEeccCC
Confidence 7665445555667777888777776663
No 492
>PTZ00369 Ras-like protein; Provisional
Probab=98.31 E-value=1.1e-05 Score=73.08 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=48.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|.+|+|||||++.+.+..... .+..|+.......+.+++.. ..+.++|++|......
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 68 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFID-EYDPTIEDSYRKQCVIDEET---------------CLLDILDTAGQEEYSA- 68 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCc-CcCCchhhEEEEEEEECCEE---------------EEEEEEeCCCCccchh-
Confidence 689999999999999999998764321 12111111112233444432 2478899999643221
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+ ....++.+|+++.|+|+
T Consensus 69 ---l---~~~~~~~~d~iilv~D~ 86 (189)
T PTZ00369 69 ---M---RDQYMRTGQGFLCVYSI 86 (189)
T ss_pred ---h---HHHHhhcCCEEEEEEEC
Confidence 1 12345677887777665
No 493
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.30 E-value=4.7e-07 Score=80.11 Aligned_cols=73 Identities=25% Similarity=0.286 Sum_probs=48.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
+|+++|++|+|||||+|.|+|... .....+.+.+.+. .++|+||......
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---------~~~~~~~v~~~~~-------------------~~iDtpG~~~~~~-- 52 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---------LARKTQAVEFNDK-------------------GDIDTPGEYFSHP-- 52 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---------cCccceEEEECCC-------------------CcccCCccccCCH--
Confidence 699999999999999999998732 1233455554431 2699999753321
Q ss_pred CCCcchhhhhHHhhhchhhhhccc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
.+...+...++.+|++++|+|+.
T Consensus 53 -~~~~~~~~~~~~ad~il~v~d~~ 75 (158)
T PRK15467 53 -RWYHALITTLQDVDMLIYVHGAN 75 (158)
T ss_pred -HHHHHHHHHHhcCCEEEEEEeCC
Confidence 11222234467788888887763
No 494
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.29 E-value=3.5e-07 Score=82.95 Aligned_cols=58 Identities=31% Similarity=0.293 Sum_probs=42.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~--~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
....++|+|.+|||||||+|.|++.. ...++.+++|..+....+ + ..+.++|+||+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~-----------------~~l~l~DtpG~~~ 82 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---N-----------------DKLRLVDLPGYGY 82 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---C-----------------CeEEEeCCCCCCC
Confidence 34689999999999999999999964 344666777655432221 1 2489999999764
No 495
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.29 E-value=3.4e-07 Score=83.95 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~ 48 (406)
.+++|+|++|+|||||+|+|+|..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~ 25 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVG 25 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999999974
No 496
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.29 E-value=8.7e-07 Score=86.27 Aligned_cols=61 Identities=28% Similarity=0.346 Sum_probs=47.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
...|.++|.+|+||||++|.|+|..+. +++++.+|..+......+.|. .+.++||||+...
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~-----------------~l~VIDTPGL~d~ 99 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGF-----------------TLNIIDTPGLIEG 99 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe-----------------EEEEEECCCCCch
Confidence 458999999999999999999998764 366766666665555555553 4899999998864
No 497
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.28 E-value=1.1e-05 Score=71.57 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~ 47 (406)
+++++|++|||||||++.++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~ 23 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTG 23 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999754
No 498
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.27 E-value=2e-06 Score=82.83 Aligned_cols=38 Identities=21% Similarity=0.484 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
..++|+|+||||||||+++|+|. +.|..|.+.++|.++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~-----------~~~~~G~i~~~g~~v 149 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARI-----------LSTGISQLGLRGKKV 149 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCc-----------cCCCCceEEECCEEe
Confidence 68899999999999999999999 789999999998764
No 499
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=9.7e-07 Score=87.87 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=47.0
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCCC
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSA 85 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~~ 85 (406)
.+..|.+++++|+.|+||||+.+.|... .++++|.|.++|+++....+ ..+||..
T Consensus 285 ~i~~g~tvAiVg~SG~gKsTI~rllfRF-----------yD~~sG~I~id~qdir~vtq~slR~aIg~VPQDt 346 (497)
T COG5265 285 TIPLGKTVAIVGESGAGKSTILRLLFRF-----------YDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDT 346 (497)
T ss_pred cccCccEEEEEeCCCCcHHHHHHHHHHH-----------hCCcCceEEEcchhHHHhHHHHHHHHhCcCcccc
Confidence 4678999999999999999999999999 78999999999998765432 4567654
No 500
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.27 E-value=1.6e-06 Score=83.77 Aligned_cols=61 Identities=34% Similarity=0.476 Sum_probs=48.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
.....++++|.||+|||||+|.|++... .+++.|++|..++ .+.+.. .+.++||||+..
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~~------------------~~~l~DtPG~~~ 175 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKLSD------------------GLELLDTPGILW 175 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEeCC------------------CEEEEECCCccc
Confidence 3457899999999999999999999864 5689999998764 444432 379999999965
Q ss_pred cc
Q 015465 101 GA 102 (406)
Q Consensus 101 ~~ 102 (406)
..
T Consensus 176 ~~ 177 (276)
T TIGR03596 176 PK 177 (276)
T ss_pred CC
Confidence 43
Done!