Query 015465
Match_columns 406
No_of_seqs 454 out of 3241
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 13:06:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 2.5E-81 8.5E-86 628.5 29.0 384 1-398 1-391 (392)
2 2ohf_A Protein OLA1, GTP-bindi 100.0 5.2E-80 1.8E-84 617.8 23.7 387 1-399 1-390 (396)
3 1jal_A YCHF protein; nucleotid 100.0 4.6E-77 1.6E-81 591.2 23.6 362 23-398 1-363 (363)
4 2dby_A GTP-binding protein; GD 100.0 1.1E-73 3.8E-78 569.8 28.8 361 25-398 2-368 (368)
5 1wxq_A GTP-binding protein; st 100.0 5E-46 1.7E-50 374.7 17.3 330 26-395 2-393 (397)
6 4a9a_A Ribosome-interacting GT 100.0 1.4E-44 4.8E-49 360.2 6.4 289 25-394 73-373 (376)
7 4g1u_C Hemin import ATP-bindin 99.6 3E-16 1E-20 149.5 3.2 170 17-205 30-231 (266)
8 1ji0_A ABC transporter; ATP bi 99.6 1.1E-15 3.8E-20 143.3 3.7 167 18-204 26-221 (240)
9 2olj_A Amino acid ABC transpor 99.6 4.8E-16 1.6E-20 147.7 0.9 169 17-205 43-242 (263)
10 3tui_C Methionine import ATP-b 99.5 7.5E-16 2.6E-20 152.4 2.3 170 17-205 47-247 (366)
11 1b0u_A Histidine permease; ABC 99.5 5.1E-16 1.7E-20 147.5 0.5 169 17-205 25-236 (262)
12 3fvq_A Fe(3+) IONS import ATP- 99.5 8.4E-16 2.9E-20 151.9 1.8 171 16-205 22-222 (359)
13 3tif_A Uncharacterized ABC tra 99.5 6.4E-16 2.2E-20 144.5 -0.7 170 17-206 24-229 (235)
14 1vpl_A ABC transporter, ATP-bi 99.5 1.1E-15 3.7E-20 144.8 0.2 168 18-205 35-229 (256)
15 1g6h_A High-affinity branched- 99.5 8.3E-16 2.8E-20 145.6 -0.7 170 17-206 26-237 (257)
16 3gfo_A Cobalt import ATP-bindi 99.5 9E-16 3.1E-20 146.7 -0.6 171 16-205 26-227 (275)
17 3rlf_A Maltose/maltodextrin im 99.5 8.1E-16 2.8E-20 153.0 -1.0 171 16-205 21-217 (381)
18 2onk_A Molybdate/tungstate ABC 99.5 2.7E-15 9.2E-20 140.7 2.5 169 17-205 18-210 (240)
19 2pcj_A ABC transporter, lipopr 99.5 6.8E-16 2.3E-20 143.3 -1.7 167 17-204 23-221 (224)
20 2yyz_A Sugar ABC transporter, 99.5 4.5E-15 1.5E-19 146.9 3.6 171 16-205 21-217 (359)
21 2qi9_C Vitamin B12 import ATP- 99.5 2.4E-15 8.2E-20 141.8 1.4 167 17-204 19-215 (249)
22 3d31_A Sulfate/molybdate ABC t 99.5 4.7E-15 1.6E-19 146.2 2.5 170 17-205 19-211 (348)
23 1z47_A CYSA, putative ABC-tran 99.5 2.1E-15 7.3E-20 148.9 -0.7 171 16-205 33-229 (355)
24 1v43_A Sugar-binding transport 99.5 3.4E-15 1.2E-19 148.4 0.6 170 17-205 30-225 (372)
25 2it1_A 362AA long hypothetical 99.5 1.9E-15 6.5E-20 149.7 -1.5 171 16-205 21-217 (362)
26 1g29_1 MALK, maltose transport 99.5 3.5E-15 1.2E-19 148.5 -0.7 170 17-205 22-223 (372)
27 2yz2_A Putative ABC transporte 99.5 3.6E-15 1.2E-19 141.9 -0.7 169 17-205 26-221 (266)
28 1oxx_K GLCV, glucose, ABC tran 99.5 5.9E-15 2E-19 145.9 -0.2 171 16-205 23-224 (353)
29 3nh6_A ATP-binding cassette SU 99.4 2.3E-14 8E-19 138.9 3.1 166 18-206 74-272 (306)
30 2ihy_A ABC transporter, ATP-bi 99.4 2.2E-15 7.4E-20 144.5 -5.3 169 17-205 40-246 (279)
31 2ff7_A Alpha-hemolysin translo 99.4 2.7E-14 9.1E-19 134.5 2.3 166 17-205 28-226 (247)
32 1mv5_A LMRA, multidrug resista 99.4 1.4E-14 4.7E-19 136.1 -0.7 167 17-205 21-220 (243)
33 2nq2_C Hypothetical ABC transp 99.4 3.6E-14 1.2E-18 134.1 1.9 158 17-204 24-210 (253)
34 1udx_A The GTP-binding protein 99.4 3.1E-13 1E-17 136.3 7.7 98 16-129 149-246 (416)
35 2ixe_A Antigen peptide transpo 99.4 1.1E-13 3.7E-18 132.1 3.7 169 17-205 38-239 (271)
36 2pjz_A Hypothetical protein ST 99.4 6.7E-15 2.3E-19 139.8 -5.0 163 17-205 24-209 (263)
37 2eki_A DRG 1, developmentally- 99.3 7.2E-13 2.5E-17 104.1 4.5 53 298-350 5-62 (93)
38 2ghi_A Transport protein; mult 99.3 3.6E-13 1.2E-17 127.7 3.3 162 17-205 39-236 (260)
39 3b5x_A Lipid A export ATP-bind 99.3 3.5E-13 1.2E-17 141.8 3.2 165 16-205 361-561 (582)
40 2pze_A Cystic fibrosis transme 99.3 2.1E-13 7E-18 126.9 1.2 161 17-205 27-212 (229)
41 1sgw_A Putative ABC transporte 99.3 9.1E-13 3.1E-17 121.3 5.1 155 18-191 29-203 (214)
42 2d2e_A SUFC protein; ABC-ATPas 99.3 3.7E-13 1.2E-17 126.9 2.1 170 18-205 23-227 (250)
43 2zu0_C Probable ATP-dependent 99.3 2.1E-13 7.2E-18 129.8 0.0 166 18-206 40-249 (267)
44 3qf4_B Uncharacterized ABC tra 99.3 7.7E-13 2.6E-17 139.6 4.2 167 16-206 373-573 (598)
45 2yl4_A ATP-binding cassette SU 99.3 4.5E-13 1.6E-17 141.3 1.5 167 18-207 364-566 (595)
46 3b60_A Lipid A export ATP-bind 99.3 4.4E-13 1.5E-17 141.0 -0.2 162 17-205 362-561 (582)
47 1lnz_A SPO0B-associated GTP-bi 99.3 2.2E-12 7.7E-17 126.9 4.8 89 26-130 160-248 (342)
48 1tq4_A IIGP1, interferon-induc 99.3 3.9E-13 1.3E-17 135.3 -0.8 156 26-202 71-258 (413)
49 3iev_A GTP-binding protein ERA 99.3 1.2E-12 4E-17 127.0 2.6 183 24-236 10-228 (308)
50 3qf4_A ABC transporter, ATP-bi 99.3 2.2E-12 7.5E-17 135.8 4.5 161 18-206 363-561 (587)
51 4a82_A Cystic fibrosis transme 99.2 9.8E-13 3.4E-17 138.2 1.5 160 18-205 361-558 (578)
52 2cbz_A Multidrug resistance-as 99.2 8E-12 2.7E-16 116.7 7.3 162 17-205 24-211 (237)
53 3gd7_A Fusion complex of cysti 99.2 1.2E-12 4.1E-17 130.9 0.8 165 16-205 39-236 (390)
54 2bbs_A Cystic fibrosis transme 99.2 1.5E-12 5.1E-17 125.3 1.1 159 18-205 58-241 (290)
55 3iby_A Ferrous iron transport 99.2 3E-11 1E-15 114.1 8.7 60 26-102 3-62 (256)
56 3ozx_A RNAse L inhibitor; ATP 99.2 6.9E-12 2.4E-16 130.5 4.2 154 21-198 291-462 (538)
57 3i8s_A Ferrous iron transport 99.2 9.7E-11 3.3E-15 111.5 10.9 62 24-102 3-64 (274)
58 3ozx_A RNAse L inhibitor; ATP 99.1 6E-12 2E-16 131.0 0.6 43 13-66 14-56 (538)
59 3j16_B RLI1P; ribosome recycli 99.1 7.4E-12 2.5E-16 131.9 0.3 36 20-66 99-134 (608)
60 1yqt_A RNAse L inhibitor; ATP- 99.1 6E-12 2.1E-16 131.1 -0.9 161 21-206 309-488 (538)
61 3bk7_A ABC transporter ATP-bin 99.1 5.2E-12 1.8E-16 133.2 -1.4 160 21-205 379-557 (607)
62 4f4c_A Multidrug resistance pr 99.1 7.5E-12 2.6E-16 142.7 -0.4 161 17-206 1098-1299(1321)
63 1ega_A Protein (GTP-binding pr 99.1 1.7E-11 5.9E-16 118.4 1.8 179 24-233 8-218 (301)
64 1yqt_A RNAse L inhibitor; ATP- 99.1 2.5E-11 8.6E-16 126.4 2.5 28 20-47 43-70 (538)
65 3g5u_A MCG1178, multidrug resi 99.1 2.5E-11 8.5E-16 138.1 2.2 158 18-206 410-608 (1284)
66 3bk7_A ABC transporter ATP-bin 99.1 2.6E-11 9E-16 127.8 1.5 36 20-66 113-148 (607)
67 2gj8_A MNME, tRNA modification 99.1 1.5E-10 5E-15 102.0 6.0 90 23-129 3-94 (172)
68 2qtf_A Protein HFLX, GTP-bindi 99.0 7.7E-11 2.6E-15 116.9 4.6 89 22-129 176-268 (364)
69 3g5u_A MCG1178, multidrug resi 99.0 1.5E-11 5.2E-16 139.9 -0.6 157 16-205 1051-1252(1284)
70 3j16_B RLI1P; ribosome recycli 99.0 3.4E-11 1.1E-15 126.9 1.8 75 124-206 477-554 (608)
71 4dhe_A Probable GTP-binding pr 99.0 5.3E-10 1.8E-14 101.8 7.3 61 24-101 29-92 (223)
72 3t5d_A Septin-7; GTP-binding p 99.0 1.4E-09 4.8E-14 103.3 10.0 64 25-101 9-78 (274)
73 4f4c_A Multidrug resistance pr 99.0 6.5E-11 2.2E-15 135.1 0.7 161 17-206 437-636 (1321)
74 3tw8_B RAS-related protein RAB 99.0 5.9E-09 2E-13 90.9 12.8 83 24-128 9-91 (181)
75 3lxw_A GTPase IMAP family memb 99.0 3.8E-10 1.3E-14 105.7 5.3 89 23-128 20-115 (247)
76 1wf3_A GTP-binding protein; GT 98.9 4.3E-10 1.5E-14 108.7 4.9 88 25-129 8-97 (301)
77 2e87_A Hypothetical protein PH 98.9 2.5E-09 8.5E-14 105.6 10.5 63 22-101 165-227 (357)
78 3clv_A RAB5 protein, putative; 98.9 1E-08 3.6E-13 90.8 13.6 98 24-128 7-126 (208)
79 3oes_A GTPase rhebl1; small GT 98.9 8.9E-09 3E-13 92.4 12.7 99 7-128 6-105 (201)
80 3lxx_A GTPase IMAP family memb 98.9 7.4E-10 2.5E-14 102.7 5.5 63 24-103 29-93 (239)
81 3tkl_A RAS-related protein RAB 98.9 7.5E-09 2.6E-13 91.8 11.7 82 25-128 17-98 (196)
82 1xzp_A Probable tRNA modificat 98.9 4.8E-10 1.6E-14 115.1 4.0 91 22-129 241-334 (482)
83 1z08_A RAS-related protein RAB 98.9 1.7E-08 5.7E-13 87.2 13.2 83 24-128 6-88 (170)
84 3sop_A Neuronal-specific septi 98.9 5.5E-09 1.9E-13 99.3 10.7 67 25-102 3-74 (270)
85 1u8z_A RAS-related protein RAL 98.9 2.4E-08 8.1E-13 85.6 13.8 81 25-128 5-85 (168)
86 1z2a_A RAS-related protein RAB 98.9 2.3E-08 7.9E-13 86.0 13.7 82 25-128 6-87 (168)
87 2wji_A Ferrous iron transport 98.9 1.6E-09 5.4E-14 94.3 6.1 60 25-101 4-63 (165)
88 2gf9_A RAS-related protein RAB 98.9 1.9E-08 6.5E-13 89.1 13.3 83 24-128 22-104 (189)
89 2a5j_A RAS-related protein RAB 98.9 2E-08 6.7E-13 89.2 13.3 86 21-128 18-103 (191)
90 3q85_A GTP-binding protein REM 98.9 1.8E-08 6.1E-13 87.0 12.4 83 25-128 3-85 (169)
91 1wms_A RAB-9, RAB9, RAS-relate 98.9 9.5E-09 3.2E-13 89.5 10.7 82 25-128 8-89 (177)
92 1g16_A RAS-related protein SEC 98.9 1.7E-08 6E-13 86.9 12.2 82 25-128 4-85 (170)
93 4dsu_A GTPase KRAS, isoform 2B 98.9 2.5E-08 8.7E-13 87.6 13.4 82 24-128 4-85 (189)
94 2bov_A RAla, RAS-related prote 98.9 3.2E-08 1.1E-12 88.4 14.2 82 24-128 14-95 (206)
95 3pqc_A Probable GTP-binding pr 98.9 3.9E-09 1.3E-13 93.3 8.0 57 24-100 23-80 (195)
96 2hjg_A GTP-binding protein ENG 98.9 5.4E-09 1.8E-13 106.0 10.0 89 24-129 175-268 (436)
97 3b1v_A Ferrous iron uptake tra 98.9 1.1E-09 3.7E-14 104.3 4.5 60 24-101 3-62 (272)
98 2il1_A RAB12; G-protein, GDP, 98.9 1.9E-08 6.3E-13 89.7 12.2 83 24-128 26-108 (192)
99 3t5g_A GTP-binding protein RHE 98.9 3.3E-08 1.1E-12 86.5 13.6 81 25-128 7-87 (181)
100 2a9k_A RAS-related protein RAL 98.9 4.2E-08 1.4E-12 85.8 14.3 82 24-128 18-99 (187)
101 1z06_A RAS-related protein RAB 98.8 1.2E-08 4E-13 90.5 10.5 85 23-128 19-103 (189)
102 1vg8_A RAS-related protein RAB 98.8 2E-08 6.8E-13 90.0 12.1 83 24-128 8-90 (207)
103 2y8e_A RAB-protein 6, GH09086P 98.8 8.7E-08 3E-12 83.2 15.9 82 25-128 15-96 (179)
104 1mky_A Probable GTP-binding pr 98.8 1.3E-09 4.4E-14 110.6 4.5 87 26-129 3-92 (439)
105 1c1y_A RAS-related protein RAP 98.8 4.8E-08 1.6E-12 83.9 13.8 81 25-128 4-84 (167)
106 4dcu_A GTP-binding protein ENG 98.8 6.4E-09 2.2E-13 106.0 9.5 90 23-129 194-288 (456)
107 2bcg_Y Protein YP2, GTP-bindin 98.8 3.8E-08 1.3E-12 88.3 13.6 82 25-128 9-90 (206)
108 1ky3_A GTP-binding protein YPT 98.8 1.6E-08 5.4E-13 88.2 10.7 84 24-128 8-91 (182)
109 1kao_A RAP2A; GTP-binding prot 98.8 7.8E-08 2.7E-12 82.2 14.8 81 25-128 4-84 (167)
110 1x3s_A RAS-related protein RAB 98.8 2.7E-08 9.1E-13 88.0 11.9 83 24-128 15-97 (195)
111 2iw3_A Elongation factor 3A; a 98.8 4.3E-10 1.5E-14 123.4 0.2 42 18-70 693-734 (986)
112 2hxs_A RAB-26, RAS-related pro 98.8 2.3E-08 8E-13 87.0 11.3 84 24-128 6-89 (178)
113 3cbq_A GTP-binding protein REM 98.8 2.2E-08 7.4E-13 89.8 11.2 85 23-128 22-106 (195)
114 2bme_A RAB4A, RAS-related prot 98.8 3.4E-08 1.2E-12 86.7 12.2 83 24-128 10-92 (186)
115 3bc1_A RAS-related protein RAB 98.8 4E-08 1.4E-12 86.5 12.6 90 24-128 11-103 (195)
116 2oil_A CATX-8, RAS-related pro 98.8 5.3E-08 1.8E-12 86.4 13.4 83 24-128 25-107 (193)
117 2ew1_A RAS-related protein RAB 98.8 3.6E-08 1.2E-12 89.0 12.3 83 24-128 26-108 (201)
118 2fn4_A P23, RAS-related protei 98.8 8.9E-08 3E-12 83.3 14.4 82 24-128 9-90 (181)
119 1z0f_A RAB14, member RAS oncog 98.8 6E-08 2.1E-12 84.2 13.2 83 24-128 15-97 (179)
120 2f7s_A C25KG, RAS-related prot 98.8 6.7E-09 2.3E-13 94.1 7.2 105 12-128 13-117 (217)
121 1zbd_A Rabphilin-3A; G protein 98.8 5.3E-08 1.8E-12 87.1 12.7 82 25-128 9-90 (203)
122 1svi_A GTP-binding protein YSX 98.8 8.9E-09 3.1E-13 91.3 7.4 58 23-100 22-81 (195)
123 2o52_A RAS-related protein RAB 98.8 3.4E-08 1.2E-12 88.6 11.3 84 23-128 24-107 (200)
124 2atv_A RERG, RAS-like estrogen 98.8 9.8E-08 3.4E-12 85.0 14.1 82 23-128 27-108 (196)
125 1mky_A Probable GTP-binding pr 98.8 4.4E-09 1.5E-13 106.7 5.7 89 24-129 180-274 (439)
126 2efe_B Small GTP-binding prote 98.8 1.6E-07 5.5E-12 81.8 15.0 83 24-128 12-94 (181)
127 3a1s_A Iron(II) transport prot 98.8 2.1E-09 7.1E-14 101.5 2.8 86 25-128 6-93 (258)
128 2iwr_A Centaurin gamma 1; ANK 98.8 5.6E-08 1.9E-12 84.8 11.7 76 24-128 7-82 (178)
129 3k53_A Ferrous iron transport 98.8 2.2E-09 7.4E-14 101.8 2.6 87 25-129 4-92 (271)
130 3ux8_A Excinuclease ABC, A sub 98.8 3.3E-09 1.1E-13 113.2 4.4 73 123-205 211-292 (670)
131 3cpj_B GTP-binding protein YPT 98.8 8.3E-08 2.8E-12 87.6 13.2 82 25-128 14-95 (223)
132 2npi_A Protein CLP1; CLP1-PCF1 98.8 8.6E-10 2.9E-14 112.6 -0.3 41 19-70 133-175 (460)
133 2g6b_A RAS-related protein RAB 98.7 7.3E-08 2.5E-12 84.0 12.1 83 24-128 10-93 (180)
134 3kkq_A RAS-related protein M-R 98.7 1.2E-07 3.9E-12 83.2 13.3 82 24-128 18-99 (183)
135 2fg5_A RAB-22B, RAS-related pr 98.7 2.5E-07 8.4E-12 82.2 15.4 81 24-128 23-105 (192)
136 2dyk_A GTP-binding protein; GT 98.7 7E-09 2.4E-13 88.8 5.0 88 25-129 2-90 (161)
137 3ihw_A Centg3; RAS, centaurin, 98.7 9.8E-08 3.4E-12 84.6 12.6 76 24-128 20-95 (184)
138 3reg_A RHO-like small GTPase; 98.7 9.7E-08 3.3E-12 84.8 12.6 83 23-128 22-104 (194)
139 3q72_A GTP-binding protein RAD 98.7 7.6E-08 2.6E-12 82.7 11.3 79 25-128 3-82 (166)
140 2p5s_A RAS and EF-hand domain 98.7 1.3E-07 4.6E-12 84.5 13.2 84 23-128 27-110 (199)
141 1r2q_A RAS-related protein RAB 98.7 1E-07 3.5E-12 81.8 11.9 83 24-128 6-88 (170)
142 3dz8_A RAS-related protein RAB 98.7 3E-08 1E-12 88.0 8.7 85 22-128 21-105 (191)
143 3gee_A MNME, tRNA modification 98.7 3.6E-09 1.2E-13 108.5 2.9 92 21-129 230-323 (476)
144 2hup_A RAS-related protein RAB 98.7 8.5E-08 2.9E-12 86.1 11.5 82 25-128 30-111 (201)
145 2nzj_A GTP-binding protein REM 98.7 1.2E-07 4E-12 82.1 12.1 59 25-100 5-64 (175)
146 2ce2_X GTPase HRAS; signaling 98.7 2.4E-07 8.1E-12 78.9 13.6 81 25-128 4-84 (166)
147 2hjg_A GTP-binding protein ENG 98.7 3.2E-09 1.1E-13 107.6 1.9 88 25-129 4-93 (436)
148 2gco_A H9, RHO-related GTP-bin 98.7 2.9E-07 9.8E-12 82.5 14.6 96 10-128 10-106 (201)
149 3con_A GTPase NRAS; structural 98.7 1.3E-07 4.6E-12 83.4 11.5 82 24-128 21-102 (190)
150 2fu5_C RAS-related protein RAB 98.7 3E-08 1E-12 87.0 7.2 83 24-128 8-90 (183)
151 2q3h_A RAS homolog gene family 98.7 2.8E-07 9.5E-12 82.2 13.3 84 22-128 18-101 (201)
152 2xtp_A GTPase IMAP family memb 98.7 2E-08 6.9E-13 94.1 5.9 88 24-128 22-115 (260)
153 1oix_A RAS-related protein RAB 98.6 2.8E-08 9.5E-13 88.7 6.2 61 25-100 30-90 (191)
154 3c5c_A RAS-like protein 12; GD 98.6 4.5E-07 1.6E-11 80.3 14.0 82 23-128 20-101 (187)
155 4gp7_A Metallophosphoesterase; 98.6 5.6E-09 1.9E-13 92.1 1.2 26 20-45 5-30 (171)
156 2f9l_A RAB11B, member RAS onco 98.6 2.9E-08 9.8E-13 89.0 5.8 60 25-99 6-65 (199)
157 2lkc_A Translation initiation 98.6 3.2E-08 1.1E-12 86.2 5.7 83 22-128 6-88 (178)
158 1m7b_A RND3/RHOE small GTP-bin 98.6 7.3E-07 2.5E-11 78.4 14.3 81 25-128 8-88 (184)
159 3geh_A MNME, tRNA modification 98.6 6.6E-09 2.3E-13 106.1 0.8 92 21-129 221-314 (462)
160 4dcu_A GTP-binding protein ENG 98.6 7E-09 2.4E-13 105.7 0.9 88 25-129 24-113 (456)
161 3def_A T7I23.11 protein; chlor 98.6 4.7E-08 1.6E-12 92.1 6.5 62 24-102 36-98 (262)
162 2wjg_A FEOB, ferrous iron tran 98.6 3.2E-08 1.1E-12 87.2 5.0 60 25-101 8-67 (188)
163 2yc2_C IFT27, small RAB-relate 98.6 8.1E-08 2.8E-12 85.8 7.7 85 24-128 20-106 (208)
164 2iw3_A Elongation factor 3A; a 98.6 8E-09 2.7E-13 113.4 1.1 70 125-206 559-630 (986)
165 2atx_A Small GTP binding prote 98.6 7.8E-07 2.7E-11 78.8 13.9 81 25-128 19-99 (194)
166 1htw_A HI0065; nucleotide-bind 98.6 1.6E-08 5.4E-13 88.4 2.6 42 20-73 29-70 (158)
167 2fv8_A H6, RHO-related GTP-bin 98.6 6.9E-07 2.4E-11 80.3 13.4 82 24-128 25-106 (207)
168 2qu8_A Putative nucleolar GTP- 98.6 3.8E-08 1.3E-12 90.3 5.1 89 24-129 29-119 (228)
169 1gwn_A RHO-related GTP-binding 98.6 9.3E-07 3.2E-11 79.8 14.0 82 24-128 28-109 (205)
170 2pt7_A CAG-ALFA; ATPase, prote 98.6 5.4E-08 1.8E-12 95.1 6.1 42 20-72 167-208 (330)
171 3ec1_A YQEH GTPase; atnos1, at 98.6 1.7E-08 5.9E-13 100.1 2.5 84 23-126 161-253 (369)
172 3b9q_A Chloroplast SRP recepto 98.5 7.2E-08 2.5E-12 93.1 6.4 45 18-73 94-138 (302)
173 2j1l_A RHO-related GTP-binding 98.5 6.1E-07 2.1E-11 81.3 11.6 82 24-128 34-115 (214)
174 3t1o_A Gliding protein MGLA; G 98.5 7.3E-07 2.5E-11 78.6 11.8 90 24-128 14-107 (198)
175 2qm8_A GTPase/ATPase; G protei 98.5 2.8E-08 9.6E-13 97.4 2.8 42 19-71 50-91 (337)
176 1ek0_A Protein (GTP-binding pr 98.5 1.3E-07 4.6E-12 81.1 6.5 82 25-128 4-85 (170)
177 1puj_A YLQF, conserved hypothe 98.5 7.3E-08 2.5E-12 92.1 5.2 60 22-101 118-178 (282)
178 2og2_A Putative signal recogni 98.5 1.8E-07 6.1E-12 92.3 7.7 46 17-73 150-195 (359)
179 3cph_A RAS-related protein SEC 98.5 1.5E-07 5.2E-12 84.5 6.6 85 22-128 18-102 (213)
180 3q3j_B RHO-related GTP-binding 98.5 1.7E-06 5.9E-11 78.4 13.5 83 23-128 26-108 (214)
181 2cjw_A GTP-binding protein GEM 98.5 1.5E-06 5.1E-11 77.5 12.8 83 25-128 7-90 (192)
182 1h65_A Chloroplast outer envel 98.5 1.6E-07 5.4E-12 88.8 6.4 61 24-101 39-100 (270)
183 2g3y_A GTP-binding protein GEM 98.4 1.1E-06 3.8E-11 80.1 11.5 60 25-99 38-98 (211)
184 2h57_A ADP-ribosylation factor 98.4 2.4E-07 8.2E-12 81.9 6.5 82 22-128 19-100 (190)
185 3r7w_A Gtpase1, GTP-binding pr 98.4 1.8E-07 6.2E-12 90.2 6.1 88 24-129 3-91 (307)
186 4djt_A GTP-binding nuclear pro 98.4 4.8E-07 1.6E-11 81.8 8.4 84 24-128 11-94 (218)
187 1z0j_A RAB-22, RAS-related pro 98.4 2.2E-07 7.7E-12 79.8 5.7 83 24-128 6-88 (170)
188 2wkq_A NPH1-1, RAS-related C3 98.4 2.6E-06 8.9E-11 81.8 13.6 85 21-128 152-236 (332)
189 2qnr_A Septin-2, protein NEDD5 98.4 3.5E-07 1.2E-11 88.1 7.3 65 25-100 19-88 (301)
190 1f6b_A SAR1; gtpases, N-termin 98.4 2.7E-07 9.3E-12 82.7 6.0 79 24-129 25-103 (198)
191 3o47_A ADP-ribosylation factor 98.4 2.5E-07 8.5E-12 90.2 6.0 80 23-129 164-243 (329)
192 3p26_A Elongation factor 1 alp 98.4 6.1E-07 2.1E-11 92.0 9.1 83 23-129 32-145 (483)
193 1m2o_B GTP-binding protein SAR 98.4 3.7E-07 1.3E-11 81.1 6.6 80 23-129 22-101 (190)
194 3ux8_A Excinuclease ABC, A sub 98.4 1.3E-07 4.5E-12 100.9 4.1 64 132-205 565-634 (670)
195 3gj0_A GTP-binding nuclear pro 98.4 3.8E-07 1.3E-11 82.8 6.6 82 23-128 14-97 (221)
196 3dpu_A RAB family protein; roc 98.4 6.8E-07 2.3E-11 92.8 9.4 87 23-129 40-132 (535)
197 3qq5_A Small GTP-binding prote 98.4 7.2E-08 2.5E-12 97.3 1.9 89 24-128 34-123 (423)
198 1upt_A ARL1, ADP-ribosylation 98.4 6.1E-07 2.1E-11 77.2 7.1 81 22-129 5-85 (171)
199 1zd9_A ADP-ribosylation factor 98.4 3.2E-07 1.1E-11 81.1 5.2 82 22-129 20-101 (188)
200 1ksh_A ARF-like protein 2; sma 98.3 4.2E-07 1.4E-11 79.9 5.6 81 22-129 16-96 (186)
201 1jwy_B Dynamin A GTPase domain 98.3 3.7E-07 1.3E-11 87.7 5.6 26 24-49 24-49 (315)
202 1pui_A ENGB, probable GTP-bind 98.3 2.8E-07 9.7E-12 82.7 4.5 62 19-100 21-84 (210)
203 2ehv_A Hypothetical protein PH 98.3 3.1E-07 1.1E-11 84.7 4.8 28 19-46 25-52 (251)
204 2h17_A ADP-ribosylation factor 98.3 4.2E-07 1.4E-11 79.8 5.3 80 23-129 20-99 (181)
205 4dkx_A RAS-related protein RAB 98.3 5.1E-06 1.7E-10 76.0 12.8 81 24-128 13-95 (216)
206 2i3b_A HCR-ntpase, human cance 98.3 2.1E-07 7.3E-12 83.6 2.8 36 24-72 1-36 (189)
207 1ye8_A Protein THEP1, hypothet 98.3 6.3E-07 2.2E-11 79.6 5.8 23 25-47 1-23 (178)
208 1zj6_A ADP-ribosylation factor 98.3 5.9E-07 2E-11 79.2 5.5 80 23-129 15-94 (187)
209 1fzq_A ADP-ribosylation factor 98.3 3.9E-07 1.3E-11 80.2 4.2 75 23-128 15-93 (181)
210 1moz_A ARL1, ADP-ribosylation 98.3 3.1E-07 1.1E-11 80.3 3.5 81 22-129 16-96 (183)
211 1r8s_A ADP-ribosylation factor 98.3 6.6E-07 2.3E-11 76.6 5.4 76 26-128 2-77 (164)
212 3h2y_A GTPase family protein; 98.3 1.7E-07 6E-12 92.8 1.9 59 23-101 159-224 (368)
213 1mh1_A RAC1; GTP-binding, GTPa 98.3 1E-06 3.4E-11 77.0 6.4 82 24-128 5-86 (186)
214 4bas_A ADP-ribosylation factor 98.3 9E-07 3.1E-11 78.4 5.9 82 23-129 16-97 (199)
215 3sjy_A Translation initiation 98.2 8.7E-07 3E-11 88.7 6.1 91 23-129 7-109 (403)
216 2erx_A GTP-binding protein DI- 98.2 1.4E-06 4.9E-11 74.7 6.4 81 24-128 3-84 (172)
217 2j0v_A RAC-like GTP-binding pr 98.2 1.8E-06 6.2E-11 77.6 7.1 82 24-128 9-90 (212)
218 3lvq_E ARF-GAP with SH3 domain 98.2 1.2E-06 4E-11 89.9 6.6 80 23-129 321-400 (497)
219 3l0i_B RAS-related protein RAB 98.2 9.4E-08 3.2E-12 85.4 -1.6 84 24-129 33-116 (199)
220 4gzl_A RAS-related C3 botulinu 98.2 1.3E-06 4.5E-11 78.5 6.0 83 23-128 29-111 (204)
221 1zp6_A Hypothetical protein AT 98.2 9.5E-07 3.3E-11 78.3 5.0 41 20-73 5-45 (191)
222 2b6h_A ADP-ribosylation factor 98.2 9.4E-07 3.2E-11 78.6 4.4 80 23-129 28-107 (192)
223 2vf7_A UVRA2, excinuclease ABC 98.2 1.6E-07 5.6E-12 101.9 -1.5 30 18-47 517-547 (842)
224 1f5n_A Interferon-induced guan 98.2 2.1E-06 7.1E-11 89.9 6.9 67 24-101 38-104 (592)
225 2ged_A SR-beta, signal recogni 98.2 1.3E-06 4.6E-11 77.0 4.6 83 22-128 46-128 (193)
226 1u0l_A Probable GTPase ENGC; p 98.1 9.4E-07 3.2E-11 85.0 3.7 64 21-99 166-232 (301)
227 2qag_C Septin-7; cell cycle, c 98.1 4.1E-06 1.4E-10 84.3 8.5 25 25-49 32-56 (418)
228 2eyu_A Twitching motility prot 98.1 5.6E-07 1.9E-11 84.9 2.0 42 21-73 22-64 (261)
229 1znw_A Guanylate kinase, GMP k 98.1 9.4E-07 3.2E-11 79.9 3.4 30 19-48 15-44 (207)
230 3bwd_D RAC-like GTP-binding pr 98.1 1.2E-06 4E-11 76.3 3.9 82 24-128 8-89 (182)
231 2www_A Methylmalonic aciduria 98.1 3.4E-07 1.2E-11 90.0 0.4 26 22-47 72-97 (349)
232 1lvg_A Guanylate kinase, GMP k 98.1 5.6E-07 1.9E-11 81.1 1.7 49 22-72 2-52 (198)
233 2x77_A ADP-ribosylation factor 98.1 1.5E-06 5.2E-11 76.5 4.5 80 23-129 21-100 (189)
234 3t34_A Dynamin-related protein 98.1 3.7E-06 1.3E-10 82.7 7.8 37 25-61 35-71 (360)
235 3jvv_A Twitching mobility prot 98.1 2E-06 6.7E-11 84.9 5.5 27 21-47 120-146 (356)
236 2obl_A ESCN; ATPase, hydrolase 98.1 1.3E-06 4.3E-11 86.0 4.0 44 19-73 66-109 (347)
237 1z6g_A Guanylate kinase; struc 98.1 7.3E-07 2.5E-11 81.6 2.1 32 16-47 15-46 (218)
238 1t9h_A YLOQ, probable GTPase E 98.1 4.1E-07 1.4E-11 87.9 0.5 67 18-100 167-236 (307)
239 1kk1_A EIF2gamma; initiation o 98.1 5E-06 1.7E-10 83.3 8.4 96 24-129 10-117 (410)
240 2gf0_A GTP-binding protein DI- 98.1 3.9E-06 1.3E-10 74.2 6.6 81 24-128 8-89 (199)
241 2aka_B Dynamin-1; fusion prote 98.1 1.9E-06 6.4E-11 81.9 4.8 26 24-49 26-51 (299)
242 3cnl_A YLQF, putative uncharac 98.1 3.1E-06 1.1E-10 79.8 6.1 58 25-102 100-158 (262)
243 2cxx_A Probable GTP-binding pr 98.1 4.3E-06 1.5E-10 73.2 6.6 53 26-99 3-55 (190)
244 1tf7_A KAIC; homohexamer, hexa 98.1 3.6E-06 1.2E-10 87.1 6.9 44 18-72 33-78 (525)
245 3izq_1 HBS1P, elongation facto 98.1 2.3E-06 7.7E-11 90.3 5.2 84 22-129 165-279 (611)
246 2qag_B Septin-6, protein NEDD5 98.1 3.5E-06 1.2E-10 84.7 6.2 31 19-49 35-67 (427)
247 2gza_A Type IV secretion syste 98.1 1.5E-06 5.1E-11 85.9 3.4 42 19-71 170-211 (361)
248 1s96_A Guanylate kinase, GMP k 98.1 1.3E-06 4.4E-11 80.3 2.7 28 21-48 13-40 (219)
249 2j69_A Bacterial dynamin-like 98.1 9.4E-07 3.2E-11 94.6 2.0 36 22-57 67-103 (695)
250 3euj_A Chromosome partition pr 98.0 9.9E-07 3.4E-11 90.1 1.8 46 17-74 23-68 (483)
251 3c8u_A Fructokinase; YP_612366 98.0 1.8E-06 6.2E-11 78.1 3.2 41 21-72 19-62 (208)
252 1s0u_A EIF-2-gamma, translatio 98.0 8.9E-06 3E-10 81.5 8.4 96 24-129 8-115 (408)
253 3a00_A Guanylate kinase, GMP k 98.0 1E-06 3.5E-11 78.3 1.0 43 24-66 1-45 (186)
254 2dpy_A FLII, flagellum-specifi 98.0 3E-06 1E-10 85.8 4.4 43 19-72 152-194 (438)
255 2zej_A Dardarin, leucine-rich 98.0 3.8E-06 1.3E-10 73.9 4.5 23 25-47 3-25 (184)
256 2qpt_A EH domain-containing pr 98.0 6.1E-06 2.1E-10 85.9 6.6 107 23-130 64-200 (550)
257 2yv5_A YJEQ protein; hydrolase 98.0 2.1E-06 7.3E-11 82.6 2.9 41 20-72 161-204 (302)
258 3lnc_A Guanylate kinase, GMP k 98.0 1.8E-06 6E-11 79.4 2.1 50 16-65 19-70 (231)
259 3th5_A RAS-related C3 botulinu 97.2 9.8E-07 3.4E-11 78.9 0.0 84 23-129 29-112 (204)
260 3thx_A DNA mismatch repair pro 98.0 1.9E-05 6.4E-10 86.8 10.1 24 21-44 659-682 (934)
261 2fh5_B SR-beta, signal recogni 98.0 6.9E-06 2.4E-10 73.8 5.5 82 24-128 7-88 (214)
262 3c5h_A Glucocorticoid receptor 98.0 1.1E-05 3.9E-10 75.3 7.1 24 24-47 19-51 (255)
263 4a74_A DNA repair and recombin 98.0 4E-06 1.4E-10 76.1 3.8 29 19-47 20-48 (231)
264 3b85_A Phosphate starvation-in 98.0 1.9E-06 6.6E-11 78.5 1.7 30 18-47 16-45 (208)
265 1kgd_A CASK, peripheral plasma 98.0 4.6E-06 1.6E-10 73.7 4.1 43 23-65 4-48 (180)
266 3llu_A RAS-related GTP-binding 97.9 1.3E-05 4.4E-10 71.2 7.0 85 23-129 19-106 (196)
267 3tr0_A Guanylate kinase, GMP k 97.9 3.9E-06 1.3E-10 75.0 3.5 27 21-47 4-30 (205)
268 4aby_A DNA repair protein RECN 97.9 7.8E-06 2.7E-10 81.6 6.0 27 20-47 57-83 (415)
269 1rj9_A FTSY, signal recognitio 97.9 2.8E-06 9.5E-11 82.0 2.5 40 23-73 101-140 (304)
270 2p67_A LAO/AO transport system 97.9 2.3E-06 8E-11 83.7 1.8 28 20-47 52-79 (341)
271 3izy_P Translation initiation 97.9 1.3E-06 4.6E-11 90.5 0.1 84 24-130 4-87 (537)
272 1wb1_A Translation elongation 97.9 2.9E-06 1E-10 86.9 2.5 82 24-129 19-107 (482)
273 2ygr_A Uvrabc system protein A 97.9 1.8E-06 6E-11 94.7 0.8 28 18-45 662-689 (993)
274 2rcn_A Probable GTPase ENGC; Y 97.9 5.7E-06 1.9E-10 81.5 4.2 63 22-100 213-280 (358)
275 2r6f_A Excinuclease ABC subuni 97.9 2E-06 6.8E-11 94.1 1.0 28 18-45 644-671 (972)
276 3ney_A 55 kDa erythrocyte memb 97.9 5.7E-06 1.9E-10 74.7 3.7 48 23-72 18-67 (197)
277 1sq5_A Pantothenate kinase; P- 97.9 3.9E-06 1.4E-10 80.9 2.9 40 21-71 77-121 (308)
278 3pih_A Uvrabc system protein A 97.9 6.9E-06 2.3E-10 90.0 5.0 60 131-205 826-896 (916)
279 2oap_1 GSPE-2, type II secreti 97.9 4.4E-06 1.5E-10 86.2 3.1 41 20-71 256-296 (511)
280 2v9p_A Replication protein E1; 97.9 4.8E-06 1.6E-10 80.3 3.2 30 18-47 120-149 (305)
281 1nrj_B SR-beta, signal recogni 97.9 1E-05 3.5E-10 72.9 5.1 78 24-129 12-93 (218)
282 3j2k_7 ERF3, eukaryotic polype 97.9 9.7E-06 3.3E-10 82.1 5.2 83 23-129 16-129 (439)
283 2yhs_A FTSY, cell division pro 97.9 4.9E-06 1.7E-10 85.0 2.9 45 17-72 286-330 (503)
284 3e70_C DPA, signal recognition 97.8 3.5E-06 1.2E-10 82.1 1.4 40 22-72 127-166 (328)
285 3tr5_A RF-3, peptide chain rel 97.8 3.7E-06 1.3E-10 87.1 1.3 83 24-130 13-117 (528)
286 3thx_B DNA mismatch repair pro 97.8 6E-05 2E-09 82.7 10.0 28 20-47 669-696 (918)
287 3aez_A Pantothenate kinase; tr 97.8 7.1E-06 2.4E-10 79.4 2.2 27 21-47 87-113 (312)
288 2j41_A Guanylate kinase; GMP, 97.8 1.5E-05 5.3E-10 71.1 4.3 28 21-48 3-30 (207)
289 3tau_A Guanylate kinase, GMP k 97.8 1.5E-05 5.1E-10 72.1 4.1 44 22-65 6-51 (208)
290 2x2e_A Dynamin-1; nitration, h 97.8 7E-06 2.4E-10 80.6 2.0 38 25-62 32-69 (353)
291 2qag_A Septin-2, protein NEDD5 97.8 2.4E-05 8.1E-10 77.2 5.8 25 25-49 38-62 (361)
292 3mca_A HBS1, elongation factor 97.7 6.7E-06 2.3E-10 86.4 1.8 83 24-130 177-290 (592)
293 2xex_A Elongation factor G; GT 97.7 2.3E-05 7.7E-10 83.9 5.5 82 25-130 11-110 (693)
294 3asz_A Uridine kinase; cytidin 97.7 1.5E-05 5.2E-10 71.7 3.3 26 22-47 4-29 (211)
295 2jeo_A Uridine-cytidine kinase 97.7 1.6E-05 5.3E-10 73.8 3.4 32 16-47 17-48 (245)
296 1p9r_A General secretion pathw 97.7 1E-05 3.6E-10 81.3 2.2 39 22-71 165-203 (418)
297 2ewv_A Twitching motility prot 97.7 1.1E-05 3.6E-10 80.1 1.9 40 21-71 133-173 (372)
298 1zo1_I IF2, translation initia 97.7 7.3E-06 2.5E-10 84.2 0.6 82 24-129 4-85 (501)
299 2h5e_A Peptide chain release f 97.7 3.9E-05 1.3E-09 79.5 6.0 84 23-130 12-117 (529)
300 3zvr_A Dynamin-1; hydrolase, D 97.7 5.3E-05 1.8E-09 81.4 7.1 39 25-63 52-90 (772)
301 1lw7_A Transcriptional regulat 97.6 7.5E-06 2.6E-10 80.7 0.1 28 20-47 164-193 (365)
302 2dy1_A Elongation factor G; tr 97.6 4.9E-05 1.7E-09 80.9 6.3 92 21-129 6-108 (665)
303 2f1r_A Molybdopterin-guanine d 97.6 1.1E-05 3.9E-10 71.1 0.8 37 25-72 3-42 (171)
304 3szr_A Interferon-induced GTP- 97.6 1.5E-05 5.1E-10 84.0 1.8 36 26-72 47-83 (608)
305 2o8b_B DNA mismatch repair pro 97.6 1.5E-05 5.3E-10 88.4 1.7 23 24-47 789-811 (1022)
306 2c78_A Elongation factor TU-A; 97.6 2.4E-05 8.3E-10 78.2 2.9 83 23-129 10-109 (405)
307 2bbw_A Adenylate kinase 4, AK4 97.6 3E-05 1E-09 71.8 3.3 36 23-69 26-64 (246)
308 3p32_A Probable GTPase RV1496/ 97.6 6.5E-05 2.2E-09 73.7 5.8 25 23-47 78-102 (355)
309 2elf_A Protein translation elo 97.6 2.6E-05 8.9E-10 77.2 2.8 70 26-127 23-92 (370)
310 1ewq_A DNA mismatch repair pro 97.6 3.7E-05 1.3E-09 82.9 4.2 24 24-47 576-599 (765)
311 4e22_A Cytidylate kinase; P-lo 97.6 1.7E-05 5.8E-10 74.1 1.4 35 22-67 25-62 (252)
312 2bdt_A BH3686; alpha-beta prot 97.6 2.9E-05 1E-09 68.6 2.8 23 24-46 2-24 (189)
313 1qhl_A Protein (cell division 97.5 3E-06 1E-10 78.3 -4.2 38 25-73 28-65 (227)
314 1dar_A EF-G, elongation factor 97.5 8.7E-05 3E-09 79.3 6.1 83 24-130 12-112 (691)
315 1cr0_A DNA primase/helicase; R 97.5 3.2E-05 1.1E-09 73.6 2.3 31 17-47 28-58 (296)
316 4eun_A Thermoresistant glucoki 97.5 5E-05 1.7E-09 68.0 3.4 26 22-47 27-52 (200)
317 1zun_B Sulfate adenylate trans 97.5 6.9E-05 2.4E-09 75.6 4.8 25 24-48 24-48 (434)
318 2w0m_A SSO2452; RECA, SSPF, un 97.5 2.8E-05 9.5E-10 70.4 1.5 29 19-47 18-46 (235)
319 3hvz_A Uncharacterized protein 97.5 6.1E-05 2.1E-09 57.5 3.2 41 304-347 7-47 (78)
320 3q5d_A Atlastin-1; G protein, 97.4 0.00016 5.4E-09 73.2 6.7 71 25-101 68-153 (447)
321 1f60_A Elongation factor EEF1A 97.4 4.4E-05 1.5E-09 77.7 2.5 24 24-47 7-30 (458)
322 1d2e_A Elongation factor TU (E 97.4 4.4E-05 1.5E-09 76.1 2.0 24 24-47 3-26 (397)
323 1nij_A Hypothetical protein YJ 97.4 3.2E-05 1.1E-09 74.8 1.0 45 25-72 5-49 (318)
324 1n0w_A DNA repair protein RAD5 97.4 0.00011 3.7E-09 67.1 4.5 29 19-47 19-47 (243)
325 1rz3_A Hypothetical protein rb 97.4 4.1E-05 1.4E-09 68.7 1.6 27 21-47 19-45 (201)
326 1wb9_A DNA mismatch repair pro 97.4 7.6E-05 2.6E-09 80.9 3.7 26 22-47 605-630 (800)
327 1jny_A EF-1-alpha, elongation 97.4 3.3E-05 1.1E-09 78.0 0.7 24 24-47 6-29 (435)
328 2vp4_A Deoxynucleoside kinase; 97.3 7.9E-05 2.7E-09 68.4 2.8 29 19-47 15-43 (230)
329 1kag_A SKI, shikimate kinase I 97.3 8.6E-05 2.9E-09 64.3 2.8 25 23-47 3-27 (173)
330 3uie_A Adenylyl-sulfate kinase 97.3 0.00012 4.1E-09 65.4 3.4 27 21-47 22-48 (200)
331 3kta_A Chromosome segregation 97.3 0.00011 3.7E-09 64.4 3.0 28 19-47 22-49 (182)
332 2kjq_A DNAA-related protein; s 97.3 7.5E-05 2.6E-09 64.1 1.8 25 23-47 35-59 (149)
333 1knq_A Gluconate kinase; ALFA/ 97.3 0.00013 4.4E-09 63.5 3.4 25 23-47 7-31 (175)
334 3ec2_A DNA replication protein 97.2 0.00012 3.9E-09 64.2 2.7 27 21-47 35-61 (180)
335 2qt1_A Nicotinamide riboside k 97.2 0.00019 6.6E-09 64.3 4.2 33 15-47 12-44 (207)
336 1r5b_A Eukaryotic peptide chai 97.2 9.1E-05 3.1E-09 75.5 2.2 23 24-46 43-65 (467)
337 2x8a_A Nuclear valosin-contain 97.2 0.00018 6.2E-09 68.0 3.5 25 21-47 43-67 (274)
338 2ywe_A GTP-binding protein LEP 97.2 0.00018 6.1E-09 75.5 3.7 87 25-130 7-108 (600)
339 1pzn_A RAD51, DNA repair and r 97.2 0.00018 6.1E-09 70.5 3.4 29 19-47 126-154 (349)
340 2rdo_7 EF-G, elongation factor 97.2 0.00035 1.2E-08 74.8 5.8 90 24-130 10-117 (704)
341 1n0u_A EF-2, elongation factor 97.1 0.00017 6E-09 78.6 3.4 97 25-130 20-133 (842)
342 3cb4_D GTP-binding protein LEP 97.1 0.00023 7.9E-09 74.7 3.2 87 25-130 5-106 (599)
343 2cvh_A DNA repair and recombin 97.1 0.00032 1.1E-08 62.9 3.7 28 19-46 15-42 (220)
344 3cr8_A Sulfate adenylyltranfer 97.0 0.00014 4.9E-09 75.5 1.4 41 20-71 365-407 (552)
345 2qor_A Guanylate kinase; phosp 97.0 0.00022 7.5E-09 63.9 2.1 45 21-65 9-55 (204)
346 1g7s_A Translation initiation 97.0 0.00023 7.8E-09 74.7 2.3 97 25-130 6-105 (594)
347 1cke_A CK, MSSA, protein (cyti 97.0 0.00038 1.3E-08 62.9 3.5 24 24-47 5-28 (227)
348 3tqc_A Pantothenate kinase; bi 97.0 0.00033 1.1E-08 67.9 3.1 24 24-47 92-115 (321)
349 1ex7_A Guanylate kinase; subst 96.9 0.00027 9.1E-09 63.1 2.1 44 27-72 4-49 (186)
350 3vaa_A Shikimate kinase, SK; s 96.9 0.00051 1.7E-08 61.2 3.4 35 13-47 14-48 (199)
351 1nlf_A Regulatory protein REPA 96.9 0.00048 1.7E-08 64.8 3.4 33 15-47 21-53 (279)
352 3qf7_A RAD50; ABC-ATPase, ATPa 96.9 0.00048 1.6E-08 67.8 3.3 26 20-46 20-45 (365)
353 1jjv_A Dephospho-COA kinase; P 96.8 0.00056 1.9E-08 61.1 3.4 23 25-47 3-25 (206)
354 1svm_A Large T antigen; AAA+ f 96.8 0.00058 2E-08 67.6 3.7 28 20-47 165-192 (377)
355 1vma_A Cell division protein F 96.8 0.0003 1E-08 67.7 1.6 40 21-71 101-140 (306)
356 2px0_A Flagellar biosynthesis 96.8 0.00032 1.1E-08 67.1 1.5 26 22-47 103-128 (296)
357 2if2_A Dephospho-COA kinase; a 96.8 0.00059 2E-08 60.7 3.2 23 25-47 2-24 (204)
358 3r7w_B Gtpase2, GTP-binding pr 96.8 0.0016 5.4E-08 63.2 6.1 82 26-129 1-83 (331)
359 3avx_A Elongation factor TS, e 96.8 0.00058 2E-08 76.1 3.3 25 23-47 295-319 (1289)
360 2pez_A Bifunctional 3'-phospho 96.7 0.00078 2.7E-08 58.8 3.4 25 23-47 4-28 (179)
361 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00097 3.3E-08 57.0 3.4 21 25-45 24-44 (149)
362 1m7g_A Adenylylsulfate kinase; 96.6 0.00061 2.1E-08 61.3 1.9 27 21-47 22-48 (211)
363 2o5v_A DNA replication and rep 96.6 0.00086 2.9E-08 65.9 3.1 28 19-47 22-49 (359)
364 1w1w_A Structural maintenance 96.6 0.001 3.4E-08 66.8 3.6 28 21-48 23-50 (430)
365 3vqt_A RF-3, peptide chain rel 96.6 0.004 1.4E-07 64.6 8.2 83 24-130 31-135 (548)
366 1ixz_A ATP-dependent metallopr 96.6 0.00089 3E-08 61.9 2.9 21 27-47 52-72 (254)
367 2yvu_A Probable adenylyl-sulfa 96.6 0.0013 4.6E-08 57.6 3.7 27 21-47 10-36 (186)
368 3cm0_A Adenylate kinase; ATP-b 96.5 0.0011 3.9E-08 57.8 3.1 24 23-46 3-26 (186)
369 3t61_A Gluconokinase; PSI-biol 96.5 0.0011 3.9E-08 58.9 2.9 24 24-47 18-41 (202)
370 1zu4_A FTSY; GTPase, signal re 96.5 0.00095 3.2E-08 64.6 2.5 42 20-72 101-142 (320)
371 1iy2_A ATP-dependent metallopr 96.4 0.0012 4.2E-08 61.9 2.9 21 27-47 76-96 (278)
372 1e69_A Chromosome segregation 96.4 0.0014 4.7E-08 63.2 3.1 27 20-47 21-47 (322)
373 3nwj_A ATSK2; P loop, shikimat 96.4 0.00098 3.4E-08 62.2 1.9 24 24-47 48-71 (250)
374 3lda_A DNA repair protein RAD5 96.4 0.0021 7.1E-08 64.1 4.3 27 19-45 173-199 (400)
375 1tf7_A KAIC; homohexamer, hexa 96.4 0.0016 5.4E-08 67.2 3.4 30 18-47 275-304 (525)
376 1odf_A YGR205W, hypothetical 3 96.4 0.0018 6.2E-08 61.7 3.5 26 22-47 29-54 (290)
377 1in4_A RUVB, holliday junction 96.3 0.0015 5.2E-08 63.2 2.9 23 25-47 52-74 (334)
378 1y63_A LMAJ004144AAA protein; 96.3 0.0024 8.3E-08 56.1 3.9 27 21-47 7-33 (184)
379 1ls1_A Signal recognition part 96.3 0.0011 3.7E-08 63.4 1.4 39 23-72 97-135 (295)
380 3lw7_A Adenylate kinase relate 96.3 0.0022 7.5E-08 54.7 3.3 20 25-44 2-21 (179)
381 2rhm_A Putative kinase; P-loop 96.2 0.0027 9.4E-08 55.5 3.7 26 22-47 3-28 (193)
382 3kb2_A SPBC2 prophage-derived 96.2 0.0025 8.6E-08 54.5 3.3 23 25-47 2-24 (173)
383 3m6a_A ATP-dependent protease 96.2 0.0024 8.3E-08 66.1 3.8 37 23-70 107-143 (543)
384 4eaq_A DTMP kinase, thymidylat 96.2 0.0027 9.3E-08 58.2 3.6 28 20-47 22-49 (229)
385 1kht_A Adenylate kinase; phosp 96.2 0.0028 9.6E-08 55.2 3.5 24 24-47 3-26 (192)
386 1ly1_A Polynucleotide kinase; 96.2 0.0029 9.9E-08 54.6 3.6 22 25-46 3-24 (181)
387 2v54_A DTMP kinase, thymidylat 96.2 0.0032 1.1E-07 55.7 3.9 25 23-47 3-27 (204)
388 2dr3_A UPF0273 protein PH0284; 96.2 0.0029 9.9E-08 57.5 3.6 29 18-46 17-45 (247)
389 1sxj_E Activator 1 40 kDa subu 96.1 0.0015 5.1E-08 63.2 1.7 36 26-72 38-74 (354)
390 1qhx_A CPT, protein (chloramph 96.1 0.0033 1.1E-07 54.4 3.7 24 24-47 3-26 (178)
391 1q3t_A Cytidylate kinase; nucl 96.1 0.0031 1E-07 57.7 3.5 26 22-47 14-39 (236)
392 3qks_A DNA double-strand break 96.1 0.0031 1E-07 56.7 3.4 21 25-45 24-44 (203)
393 3qkt_A DNA double-strand break 96.0 0.0032 1.1E-07 61.1 3.5 21 25-45 24-44 (339)
394 2jaq_A Deoxyguanosine kinase; 96.0 0.0034 1.2E-07 55.3 3.4 23 25-47 1-23 (205)
395 1ukz_A Uridylate kinase; trans 96.0 0.0042 1.5E-07 55.0 4.0 26 22-47 13-38 (203)
396 1np6_A Molybdopterin-guanine d 96.0 0.0036 1.2E-07 55.0 3.4 24 24-47 6-29 (174)
397 1vht_A Dephospho-COA kinase; s 96.0 0.0036 1.2E-07 56.3 3.5 25 23-47 3-27 (218)
398 2plr_A DTMP kinase, probable t 96.0 0.004 1.4E-07 55.2 3.6 24 24-47 4-27 (213)
399 2wwf_A Thymidilate kinase, put 95.9 0.0045 1.5E-07 55.1 3.7 26 22-47 8-33 (212)
400 2c95_A Adenylate kinase 1; tra 95.9 0.0043 1.5E-07 54.3 3.5 26 22-47 7-32 (196)
401 1nn5_A Similar to deoxythymidy 95.9 0.005 1.7E-07 54.8 3.7 26 22-47 7-32 (215)
402 1tev_A UMP-CMP kinase; ploop, 95.9 0.0047 1.6E-07 53.9 3.5 24 24-47 3-26 (196)
403 2bwj_A Adenylate kinase 5; pho 95.9 0.0026 8.9E-08 56.0 1.8 27 21-47 9-35 (199)
404 2wsm_A Hydrogenase expression/ 95.9 0.004 1.4E-07 55.7 3.1 24 24-47 30-53 (221)
405 2dhr_A FTSH; AAA+ protein, hex 95.8 0.03 1E-06 57.4 9.8 25 21-47 63-87 (499)
406 2p5t_B PEZT; postsegregational 95.8 0.0035 1.2E-07 58.1 2.5 27 21-47 29-55 (253)
407 1aky_A Adenylate kinase; ATP:A 95.8 0.0054 1.9E-07 55.2 3.7 25 23-47 3-27 (220)
408 3fb4_A Adenylate kinase; psych 95.8 0.0049 1.7E-07 55.2 3.4 23 25-47 1-23 (216)
409 2cdn_A Adenylate kinase; phosp 95.8 0.0061 2.1E-07 54.0 3.8 26 22-47 18-43 (201)
410 3dl0_A Adenylate kinase; phosp 95.7 0.0053 1.8E-07 55.0 3.4 23 25-47 1-23 (216)
411 1uf9_A TT1252 protein; P-loop, 95.7 0.0062 2.1E-07 53.6 3.7 24 24-47 8-31 (203)
412 3iij_A Coilin-interacting nucl 95.7 0.0058 2E-07 53.1 3.3 25 23-47 10-34 (180)
413 1zd8_A GTP:AMP phosphotransfer 95.7 0.0063 2.2E-07 55.1 3.5 25 23-47 6-30 (227)
414 3trf_A Shikimate kinase, SK; a 95.7 0.0065 2.2E-07 52.9 3.5 24 24-47 5-28 (185)
415 3j25_A Tetracycline resistance 95.6 0.0058 2E-07 64.6 3.6 82 26-131 4-103 (638)
416 1nks_A Adenylate kinase; therm 95.6 0.0064 2.2E-07 52.9 3.3 23 25-47 2-24 (194)
417 1qf9_A UMP/CMP kinase, protein 95.6 0.0074 2.5E-07 52.5 3.6 24 24-47 6-29 (194)
418 2iyv_A Shikimate kinase, SK; t 95.6 0.0054 1.8E-07 53.4 2.7 24 24-47 2-25 (184)
419 3k1j_A LON protease, ATP-depen 95.5 0.0065 2.2E-07 63.7 3.6 27 21-47 57-83 (604)
420 2z0h_A DTMP kinase, thymidylat 95.5 0.0072 2.5E-07 52.9 3.4 23 25-47 1-23 (197)
421 2pt5_A Shikimate kinase, SK; a 95.5 0.0078 2.7E-07 51.4 3.4 23 25-47 1-23 (168)
422 1gtv_A TMK, thymidylate kinase 95.5 0.0034 1.1E-07 56.0 1.0 22 26-47 2-23 (214)
423 2pbr_A DTMP kinase, thymidylat 95.5 0.0076 2.6E-07 52.5 3.3 23 25-47 1-23 (195)
424 2vli_A Antibiotic resistance p 95.5 0.0059 2E-07 52.9 2.6 25 23-47 4-28 (183)
425 3tlx_A Adenylate kinase 2; str 95.5 0.0086 3E-07 55.1 3.7 26 22-47 27-52 (243)
426 1via_A Shikimate kinase; struc 95.4 0.0067 2.3E-07 52.5 2.7 22 26-47 6-27 (175)
427 3r20_A Cytidylate kinase; stru 95.4 0.0088 3E-07 55.1 3.6 25 23-47 8-32 (233)
428 2hf9_A Probable hydrogenase ni 95.4 0.0076 2.6E-07 54.1 3.0 24 24-47 38-61 (226)
429 1gvn_B Zeta; postsegregational 95.4 0.0086 2.9E-07 56.8 3.5 26 22-47 31-56 (287)
430 1zak_A Adenylate kinase; ATP:A 95.4 0.0079 2.7E-07 54.2 3.1 24 24-47 5-28 (222)
431 3be4_A Adenylate kinase; malar 95.3 0.0092 3.2E-07 53.7 3.4 24 24-47 5-28 (217)
432 1e6c_A Shikimate kinase; phosp 95.3 0.0089 3.1E-07 51.2 3.1 23 25-47 3-25 (173)
433 1e4v_A Adenylate kinase; trans 95.3 0.0095 3.2E-07 53.4 3.3 23 25-47 1-23 (214)
434 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.01 3.5E-07 55.2 3.6 24 23-46 3-26 (260)
435 2ze6_A Isopentenyl transferase 95.2 0.0093 3.2E-07 55.3 3.1 22 26-47 3-24 (253)
436 3sr0_A Adenylate kinase; phosp 95.2 0.011 3.7E-07 53.3 3.4 23 25-47 1-23 (206)
437 3ake_A Cytidylate kinase; CMP 95.2 0.011 3.9E-07 52.1 3.4 22 26-47 4-25 (208)
438 2xb4_A Adenylate kinase; ATP-b 95.1 0.011 3.9E-07 53.4 3.4 23 25-47 1-23 (223)
439 3hr8_A Protein RECA; alpha and 95.1 0.0062 2.1E-07 59.7 1.6 29 19-47 56-84 (356)
440 1xjc_A MOBB protein homolog; s 95.1 0.011 3.9E-07 51.6 3.1 23 25-47 5-27 (169)
441 1j8m_F SRP54, signal recogniti 95.1 0.0048 1.6E-07 58.9 0.7 24 24-47 98-121 (297)
442 3umf_A Adenylate kinase; rossm 95.0 0.015 5.1E-07 52.9 3.9 27 21-47 26-52 (217)
443 1zuh_A Shikimate kinase; alpha 95.0 0.014 4.8E-07 49.9 3.4 23 25-47 8-30 (168)
444 1lv7_A FTSH; alpha/beta domain 95.0 0.014 4.8E-07 53.7 3.5 23 25-47 46-68 (257)
445 2ffh_A Protein (FFH); SRP54, s 94.9 0.0081 2.8E-07 60.3 1.8 25 23-47 97-121 (425)
446 2ga8_A Hypothetical 39.9 kDa p 94.9 0.013 4.4E-07 57.3 3.1 27 21-47 19-47 (359)
447 1ak2_A Adenylate kinase isoenz 94.9 0.017 5.9E-07 52.5 3.8 25 23-47 15-39 (233)
448 3ice_A Transcription terminati 94.8 0.015 5.1E-07 57.6 3.5 31 17-47 167-197 (422)
449 3cf0_A Transitional endoplasmi 94.7 0.017 5.9E-07 54.8 3.5 27 21-47 46-72 (301)
450 3v9p_A DTMP kinase, thymidylat 94.7 0.016 5.3E-07 53.2 3.1 31 17-47 18-48 (227)
451 3kl4_A SRP54, signal recogniti 94.6 0.012 4.2E-07 59.1 2.4 25 23-47 96-120 (433)
452 1sxj_C Activator 1 40 kDa subu 94.6 0.012 4E-07 56.8 2.1 21 27-47 49-69 (340)
453 2f6r_A COA synthase, bifunctio 94.5 0.022 7.6E-07 53.6 3.7 23 24-46 75-97 (281)
454 3auy_A DNA double-strand break 94.4 0.02 6.9E-07 56.1 3.3 21 25-45 26-46 (371)
455 2grj_A Dephospho-COA kinase; T 94.4 0.022 7.7E-07 50.6 3.3 24 24-47 12-35 (192)
456 1ltq_A Polynucleotide kinase; 94.3 0.024 8.3E-07 53.4 3.6 22 25-46 3-24 (301)
457 1uj2_A Uridine-cytidine kinase 94.3 0.025 8.5E-07 52.1 3.5 23 24-46 22-44 (252)
458 1jbk_A CLPB protein; beta barr 94.3 0.029 9.9E-07 48.0 3.8 24 24-47 43-66 (195)
459 2zr9_A Protein RECA, recombina 94.3 0.023 7.8E-07 55.4 3.4 29 19-47 56-84 (349)
460 3bos_A Putative DNA replicatio 94.3 0.027 9.3E-07 50.4 3.7 25 23-47 51-75 (242)
461 4ag6_A VIRB4 ATPase, type IV s 94.2 0.012 4.2E-07 57.9 1.3 25 23-47 34-58 (392)
462 3gmt_A Adenylate kinase; ssgci 94.1 0.028 9.6E-07 51.6 3.4 24 24-47 8-31 (230)
463 4ad8_A DNA repair protein RECN 94.1 0.0095 3.2E-07 61.2 0.2 26 21-47 58-83 (517)
464 3b9p_A CG5977-PA, isoform A; A 94.0 0.029 1E-06 52.6 3.4 25 23-47 53-77 (297)
465 2w58_A DNAI, primosome compone 93.9 0.033 1.1E-06 49.1 3.3 23 25-47 55-77 (202)
466 1ypw_A Transitional endoplasmi 93.9 0.027 9.1E-07 61.1 3.2 27 21-47 235-261 (806)
467 4fn5_A EF-G 1, elongation fact 93.9 0.16 5.5E-06 54.2 9.2 90 25-131 14-121 (709)
468 2qby_A CDC6 homolog 1, cell di 93.8 0.028 9.7E-07 54.1 3.0 25 23-47 44-68 (386)
469 4edh_A DTMP kinase, thymidylat 93.8 0.037 1.3E-06 50.0 3.5 25 23-47 5-29 (213)
470 1fnn_A CDC6P, cell division co 93.8 0.035 1.2E-06 53.8 3.5 22 26-47 46-67 (389)
471 2h92_A Cytidylate kinase; ross 93.6 0.034 1.2E-06 49.6 3.0 24 24-47 3-26 (219)
472 2r6a_A DNAB helicase, replicat 93.6 0.041 1.4E-06 55.4 3.8 30 18-47 197-226 (454)
473 3llm_A ATP-dependent RNA helic 93.6 0.029 1E-06 51.0 2.4 26 21-46 73-98 (235)
474 4fcw_A Chaperone protein CLPB; 93.6 0.039 1.3E-06 51.9 3.4 24 24-47 47-70 (311)
475 3h4m_A Proteasome-activating n 93.5 0.042 1.4E-06 51.1 3.5 26 22-47 49-74 (285)
476 2j37_W Signal recognition part 93.5 0.038 1.3E-06 56.6 3.4 23 23-45 100-122 (504)
477 1v5w_A DMC1, meiotic recombina 93.5 0.047 1.6E-06 52.9 4.0 29 19-47 117-145 (343)
478 2ocp_A DGK, deoxyguanosine kin 93.5 0.045 1.5E-06 49.9 3.6 24 24-47 2-25 (241)
479 2v3c_C SRP54, signal recogniti 93.4 0.03 1E-06 56.2 2.4 24 24-47 99-122 (432)
480 1a7j_A Phosphoribulokinase; tr 93.4 0.028 9.5E-07 53.3 2.0 23 24-46 5-27 (290)
481 2p65_A Hypothetical protein PF 93.4 0.04 1.4E-06 47.0 2.9 24 24-47 43-66 (187)
482 3lv8_A DTMP kinase, thymidylat 93.3 0.051 1.7E-06 50.0 3.6 26 22-47 25-50 (236)
483 3zvl_A Bifunctional polynucleo 93.2 0.049 1.7E-06 54.3 3.6 26 22-47 256-281 (416)
484 4b4t_J 26S protease regulatory 93.2 0.051 1.7E-06 54.0 3.7 27 21-47 179-205 (405)
485 2ce7_A Cell division protein F 93.2 0.041 1.4E-06 56.0 3.0 22 26-47 51-72 (476)
486 4tmk_A Protein (thymidylate ki 93.1 0.057 2E-06 48.8 3.6 25 23-47 2-26 (213)
487 1p5z_B DCK, deoxycytidine kina 93.1 0.032 1.1E-06 51.7 1.9 26 22-47 22-47 (263)
488 3tmk_A Thymidylate kinase; pho 93.0 0.063 2.2E-06 48.7 3.7 25 23-47 4-28 (216)
489 1sky_E F1-ATPase, F1-ATP synth 93.0 0.046 1.6E-06 55.3 3.0 27 21-47 148-174 (473)
490 2qz4_A Paraplegin; AAA+, SPG7, 92.9 0.062 2.1E-06 49.1 3.6 25 23-47 38-62 (262)
491 1l8q_A Chromosomal replication 92.9 0.046 1.6E-06 52.1 2.7 24 24-47 37-60 (324)
492 2z43_A DNA repair and recombin 92.8 0.058 2E-06 51.7 3.4 29 19-47 102-130 (324)
493 3dm5_A SRP54, signal recogniti 92.8 0.062 2.1E-06 54.1 3.6 24 23-46 99-122 (443)
494 1njg_A DNA polymerase III subu 92.8 0.067 2.3E-06 47.4 3.5 23 25-47 46-68 (250)
495 3ld9_A DTMP kinase, thymidylat 92.7 0.071 2.4E-06 48.6 3.7 25 23-47 20-44 (223)
496 1tue_A Replication protein E1; 92.5 0.058 2E-06 48.7 2.7 27 21-47 55-81 (212)
497 1yrb_A ATP(GTP)binding protein 92.5 0.077 2.6E-06 48.5 3.7 22 24-45 14-35 (262)
498 3crm_A TRNA delta(2)-isopenten 92.5 0.076 2.6E-06 51.2 3.7 24 24-47 5-28 (323)
499 4b4t_L 26S protease subunit RP 92.4 0.084 2.9E-06 53.0 4.0 27 21-47 212-238 (437)
500 4hlc_A DTMP kinase, thymidylat 92.3 0.08 2.7E-06 47.4 3.5 25 23-47 1-25 (205)
No 1
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=2.5e-81 Score=628.55 Aligned_cols=384 Identities=47% Similarity=0.839 Sum_probs=346.1
Q ss_pred CCCccccCcCCCCcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhh
Q 015465 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQL 79 (406)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~ 79 (406)
||||+. . +.+..++|++.+|.++||||+||||||||||+|+|... .++++||||+.|+.|.+.++|.++..++.+
T Consensus 1 ~~~~~~-~---~~~~~~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~ 76 (392)
T 1ni3_A 1 MPPKKQ-Q---EVVKVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEA 76 (392)
T ss_dssp --------------CCCCSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHH
T ss_pred CCCCcc-C---cchhhHhccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhh
Confidence 788732 1 34568999999999999999999999999999999887 779999999999999999999999999999
Q ss_pred ccCCCCcCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhH
Q 015465 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDI 159 (406)
Q Consensus 80 ~~p~~~~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di 159 (406)
+.|++.++..+.++|+||+..+.+.++++++.++..++.+|++++|+|++.+.++.++.+..||.++++++++++..+|+
T Consensus 77 ~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~ 156 (392)
T 1ni3_A 77 YKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDA 156 (392)
T ss_dssp HCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHH
Confidence 99999888889999999999988888889999999999999999999999989999999899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc----ccchHHHHHHHHHHHHHhhCC-CccccCCCChhHHHHHHHhhhhccccEEeeeccchh
Q 015465 160 EFMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQDG-KDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEK 234 (406)
Q Consensus 160 ~~l~k~l~~~~~~~~~~~----~h~~~~v~~l~~~i~~~L~~g-~~~~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~ 234 (406)
..+++.++.+.+....++ +|.+.++.++|+++..+|++| ++++.++|++++.++++.+++++.||++|++|++++
T Consensus 157 ~~~~k~~~~l~~~~~~~g~ti~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~e~i~~~~~lt~kp~~y~~Nv~e~ 236 (392)
T 1ni3_A 157 EFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSER 236 (392)
T ss_dssp HHHHHHHHHHHHTTCCSSCSSSHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHHHHHHTTCCGGGSCEEEEEECCHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhccCCceeecCCCCHHHHHHHHHHhhhccCceEEEEEecch
Confidence 999998888876512332 489999999999998899999 999889999999999999999999999999999997
Q ss_pred hhhhhhccChhhHHHHHHhhC-CCeEEEeccccchhhcCCChhHHHHHHHhccccccHHHHHHHHHcccCcEEEeecCCC
Q 015465 235 DYQRKKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPD 313 (406)
Q Consensus 235 ~~~~~~~~~v~~i~~~~~~~~-~~~~v~~sa~~E~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~L~li~~fT~g~~ 313 (406)
++..+.+++++++++++.+.+ +.+++++||+.|.+|++|+++|+.+||+++|.++||++||+++|++||||+|||+||+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L~l~~~ft~g~~ 316 (392)
T 1ni3_A 237 DFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNLINYFTCGED 316 (392)
T ss_dssp HHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEECCSS
T ss_pred hhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHhCCEEEECCCCC
Confidence 664234778999999887642 3679999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEecCCCCcchhcccchhhhhhccEEEEEeccchhhhcCChHHHhhcCceeeeeeeeeeeccCCCccccCCCcEEE
Q 015465 314 EVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKVNVLISRFIIIISILSCPSCHCKSTEFACHW 393 (406)
Q Consensus 314 e~raw~i~~gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
|+|||||++|+||+||||+|||||+|||||||||+|+||+++||+++||++||+|+.|+. |..|+||+++
T Consensus 317 e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~----------y~v~dgdv~~ 386 (392)
T 1ni3_A 317 EVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKE----------YVMESGDIAH 386 (392)
T ss_dssp EEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETT----------CBCCTTCEEE
T ss_pred cceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCc----------eeeeCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEEe
Q 015465 394 LRIVL 398 (406)
Q Consensus 394 ~~~~~ 398 (406)
||||+
T Consensus 387 f~f~~ 391 (392)
T 1ni3_A 387 WKAGK 391 (392)
T ss_dssp CC---
T ss_pred EEccC
Confidence 99997
No 2
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.2e-80 Score=617.75 Aligned_cols=387 Identities=57% Similarity=0.926 Sum_probs=303.5
Q ss_pred CCCccccCcCCCCcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhc
Q 015465 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF 80 (406)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~ 80 (406)
||||+... .+.+..+++++.++.++||||+||+|||||||+|+|....++++||||+.|+.|.+.+++.++..+++.+
T Consensus 1 ~~~~~~~~--~~~~~~l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~ 78 (396)
T 2ohf_A 1 MPPKKGGD--GIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYH 78 (396)
T ss_dssp -----------------CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHH
T ss_pred CCCCcccc--cchhhHHHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeecccc
Confidence 78874210 1345689999999999999999999999999999999887799999999999999999999888899999
Q ss_pred cCCCCcCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHH
Q 015465 81 KPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (406)
Q Consensus 81 ~p~~~~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~ 160 (406)
.|.+.++..++++|+||+..+.+.+.++++.++..++.+|++++|+|+++++++.++++..+|.++++.++.|+.++|++
T Consensus 79 ~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~ 158 (396)
T 2ohf_A 79 KPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEE 158 (396)
T ss_dssp CCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHH
Confidence 99888888999999999998888888899999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCC-Cccc-cCCCChhHHHHHHHhhhhccccEEeeeccchhhhhh
Q 015465 161 FMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG-KDVR-LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQR 238 (406)
Q Consensus 161 ~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g-~~~~-~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~ 238 (406)
.++++++++.+...+++.+....+..+++++..+|++| ++++ ..+|++++++.++.+++++.||++|++|++++++..
T Consensus 159 ~~~k~~~~~~k~~~~~g~~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e~i~~~~llt~KPviy~~Nv~e~~~~~ 238 (396)
T 2ohf_A 159 MIGPIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIR 238 (396)
T ss_dssp HHHHHHHTTCSCC--------CCHHHHHHHHHHHTTC--CCGGGCCCCCHHHHHHHHHHCCGGGSCEEEEEECCHHHHHH
T ss_pred HHHHhhhhhhhhhhcccchhhhhHHHHHHHHHHHHHhcCcchhhcccCCHHHHHHHHHHHHHhCCceEEEEEecHHHhcc
Confidence 99998887664322222233446778999999999999 6665 468999999999888999999999999999888765
Q ss_pred hhccChhhHHHHHHhh-CCCeEEEeccccchhhcCCChhHHHHHHHhccccccHHHHHHHHHcccCcEEEeecCCCCeee
Q 015465 239 KKNKFLPKIHAWVQEH-GGEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEVKC 317 (406)
Q Consensus 239 ~~~~~v~~i~~~~~~~-~~~~~v~~sa~~E~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~L~li~~fT~g~~e~ra 317 (406)
..+++++++++++... .+.+++++||+.|.+|++|+++|+.+||+++|.++||++||+++|++||||+|||+||||+||
T Consensus 239 ~~n~~~~~v~~~~~~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L~li~~fT~g~~evra 318 (396)
T 2ohf_A 239 KKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAGPDEVRA 318 (396)
T ss_dssp TCCHHHHHHHHHHHHHSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEEESSSEEEE
T ss_pred cccHHHHHHHHHHHhhCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHhCCEEEECCCCCccee
Confidence 5577899999887653 256899999999999999999999999999996699999999999999999999999999999
Q ss_pred EEecCCCCcchhcccchhhhhhccEEEEEeccchhhhcCChHHHhhcCceeeeeeeeeeeccCCCccccCCCcEEEEEEE
Q 015465 318 WQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKVNVLISRFIIIISILSCPSCHCKSTEFACHWLRIV 397 (406)
Q Consensus 318 w~i~~gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
|||++|+||+||||+|||||+|||||||||+|+||+++||+++||++||+|+.|+. |..++||+++||||
T Consensus 319 wti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~----------y~v~dgDii~f~fn 388 (396)
T 2ohf_A 319 WTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRN----------YIVEDGDIIFFKFN 388 (396)
T ss_dssp EEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTT----------CBCCTTCEEEEEEC
T ss_pred EEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCC----------ceeeCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ee
Q 015465 398 LY 399 (406)
Q Consensus 398 ~~ 399 (406)
+=
T Consensus 389 ~~ 390 (396)
T 2ohf_A 389 TP 390 (396)
T ss_dssp --
T ss_pred CC
Confidence 83
No 3
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=4.6e-77 Score=591.20 Aligned_cols=362 Identities=37% Similarity=0.664 Sum_probs=320.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
++.+++|||.||+|||||||+|++....++++||||+.|+.|.+.+++.++..+++.+.|.+.++..++++|+||+..+.
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 36789999999999999999999988777999999999999999999998899999999998888889999999999887
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchH
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK 182 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~ 182 (406)
+.+.+++++|+..++.+|++++|+|+++++++.++.+..||..+++.++.|+.++|++.++++++++.+.. +++.+...
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~-k~g~~~~~ 159 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRA-KGGDKEAK 159 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTCHHHH
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHh-hccchhHH
Confidence 77778889999999999999999999999999999999999999999999999999999999999887654 32224556
Q ss_pred HHHHHHHHHHHHhhCCCccccCCCChhHHHHHHHhhhhccccEEeeeccchhhhhhhhccChhhHHHHHHhhCCCeEEEe
Q 015465 183 IEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPF 262 (406)
Q Consensus 183 ~v~~l~~~i~~~L~~g~~~~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~~~~~v~~i~~~~~~~~~~~~v~~ 262 (406)
.+.+++++++..|++|++++..+|++++.+.++.+.+++.||++|++|+++.++ ..+.++++++++.... +.+++++
T Consensus 160 ~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~--~~n~~~~~v~~~~~~~-~~~~i~~ 236 (363)
T 1jal_A 160 FELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF--ENNPYLDRVREIAAKE-GAVVVPV 236 (363)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS--SSCHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc--cccHHHHHHHHHHHHc-CCCEEEe
Confidence 778899999999999999987789999999999999999999999999998765 2356888999887664 6789999
Q ss_pred ccccchhhcCCChhHHHHHHHhcc-ccccHHHHHHHHHcccCcEEEeecCCCCeeeEEecCCCCcchhcccchhhhhhcc
Q 015465 263 SCALERNLADMPPDEAAKYCEENK-VQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGF 341 (406)
Q Consensus 263 sa~~E~~l~~l~~~~~~~~~~~~~-~~~~l~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~aAg~IHsD~~kgF 341 (406)
||+.|.+|++|+++++.+|++++| .++||++|++++|++||||+|||+||+|+|||||++|+||+||||+|||||+|||
T Consensus 237 sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gF 316 (363)
T 1jal_A 237 CAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGF 316 (363)
T ss_dssp CHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHC
T ss_pred chHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhcc
Confidence 999999999999999999999999 7999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccchhhhcCChHHHhhcCceeeeeeeeeeeccCCCccccCCCcEEEEEEEe
Q 015465 342 ICAEVMKFDDLKELGSEPAVKVNVLISRFIIIISILSCPSCHCKSTEFACHWLRIVL 398 (406)
Q Consensus 342 i~Aev~~~~d~~~~g~~~~~k~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
||||||+|+||+++||+++||++||+|+.|+. |..++||+++||||+
T Consensus 317 i~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~----------y~v~dgDii~f~fn~ 363 (363)
T 1jal_A 317 IRAEVIAYEDFIQFNGENGAKEAGKWRLEGKD----------YIVQDGDVMHFRFNV 363 (363)
T ss_dssp CEEEEECHHHHHHTTSHHHHHHTTCCEEECTT----------CBCCTTCEEEEESCC
T ss_pred EEEEEcCHHHHHHhCCHHHHHhcCCeeccCCc----------cEecCCCEEEEEecC
Confidence 99999999999999999999999999999999 999999999999996
No 4
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=100.00 E-value=1.1e-73 Score=569.76 Aligned_cols=361 Identities=41% Similarity=0.625 Sum_probs=319.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCC----CcCceeEEEeeccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS----AVPAFLEIHDIAGLVR 100 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~----~~~~~i~lvD~~gl~~ 100 (406)
.++||+|+||+|||||||+|++....++++||+|+.|+.|.+.+++.++..++..+.+.+ ..+..++++|+||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 368999999999999999999987677999999999999999999998888888888876 4566799999999998
Q ss_pred cccCCCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccc
Q 015465 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQ 180 (406)
Q Consensus 101 ~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~ 180 (406)
+.+.+.+++++|+..++.+|++++|+|+++++++.++++..||..+++.++.|+.++|++.++++++++.+.. .+ .+.
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~-~~-~~~ 159 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEA-RA-DRE 159 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-CGG
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhh-cc-chh
Confidence 8888888999999999999999999999999999999989999999999999999999999999999887654 22 256
Q ss_pred hHHHHHHHHHHHHHhhCCCccccCCCChhHHHHHHHhhhhccccEEeeeccchhhhhhh-hccChhhHHHHHHhhCCCeE
Q 015465 181 LKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRK-KNKFLPKIHAWVQEHGGEQI 259 (406)
Q Consensus 181 ~~~v~~l~~~i~~~L~~g~~~~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~ 259 (406)
.....++|+++...|++|++++..+|++++.+.++.+.+++.||++|++|++++++... ++.+++.++++++.. +.++
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~-g~~v 238 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEE-GAEV 238 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHH-TCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHc-CCeE
Confidence 67778999999999999998877789988889999999999999999999998765331 256888898887665 5789
Q ss_pred EEeccccchhhcCCChhHHHHHHHhcc-ccccHHHHHHHHHcccCcEEEeecCCCCeeeEEecCCCCcchhcccchhhhh
Q 015465 260 IPFSCALERNLADMPPDEAAKYCEENK-VQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFE 338 (406)
Q Consensus 260 v~~sa~~E~~l~~l~~~~~~~~~~~~~-~~~~l~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~aAg~IHsD~~ 338 (406)
+++||+.|.+|.+|.++++.+|++++| .++||++|++++|++||||+|||+||+|+|||||++|+||+||||+|||||+
T Consensus 239 v~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~ 318 (368)
T 2dby_A 239 VVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDME 318 (368)
T ss_dssp EEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEEEESSSCEEEEEEETTCBHHHHHHHHCHHHH
T ss_pred EEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEECCCCCCcceEEecCCCcHHHHHHhhHHHHH
Confidence 999999999999999999999999999 7999999999999999999999999999999999999999999999999999
Q ss_pred hccEEEEEeccchhhhcCChHHHhhcCceeeeeeeeeeeccCCCccccCCCcEEEEEEEe
Q 015465 339 RGFICAEVMKFDDLKELGSEPAVKVNVLISRFIIIISILSCPSCHCKSTEFACHWLRIVL 398 (406)
Q Consensus 339 kgFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
|||||||||+|+||+++||+++||++||+|+.|+. |..++||+++||||+
T Consensus 319 ~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~----------y~v~dgdi~~~~f~~ 368 (368)
T 2dby_A 319 RGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKD----------YEVQDGDVIYVLFNA 368 (368)
T ss_dssp HSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTT----------CBCCTTEEEEEEC--
T ss_pred hhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCC----------ceecCCCEEEEEecC
Confidence 99999999999999999999999999999999999 999999999999996
No 5
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=5e-46 Score=374.69 Aligned_cols=330 Identities=24% Similarity=0.334 Sum_probs=225.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEE----cCCcchhhhhhhccCCC------CcCceeEEEee
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN----IPDERFEWLCQLFKPKS------AVPAFLEIHDI 95 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~----v~g~~~~~l~~~~~p~~------~~~~~i~lvD~ 95 (406)
+++|+|+||+|||||||+|+|....++++||||+.|+.|.+. +++.++.. .+.|.. .-..++.++||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~---~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGC---SPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCC---SCCCSSSCEETTEEEEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhh---hcccccccccCCcceEEEEEEEC
Confidence 689999999999999999999986668999999999999753 34433221 222220 00135899999
Q ss_pred ccccccccCCCCCcchhhhhHHhhhchhhhhcccCCCc--eEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 015465 96 AGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD--IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM 173 (406)
Q Consensus 96 ~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~~~--il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~ 173 (406)
||+..+.+.+.+++++++..++.+|++++|+|++...+ -.+.+ ..||.++++.++.|+.++|++.+++++.++.+..
T Consensus 79 pG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~-~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~ 157 (397)
T 1wxq_A 79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTD-YHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRI 157 (397)
T ss_dssp C---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCS-CCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTT
T ss_pred CCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccC-CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99988777777788888899999999999999986421 11122 5699999999999999999999999888887543
Q ss_pred hhccccchH-HH----------HHHHHHHHHHhhCCCccccCCCChhHHHHHHHhhhhccccEEeeeccchhhhhhhhcc
Q 015465 174 KRSNDKQLK-IE----------HELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNK 242 (406)
Q Consensus 174 ~~~~~h~~~-~v----------~~l~~~i~~~L~~g~~~~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~~~~ 242 (406)
..+. .... .+ .+.+.+++..|..+.+. ..|++++...+..+.+++.||++|++|+.|.. . +.
T Consensus 158 ~~~~-~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~--~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~---~~ 230 (397)
T 1wxq_A 158 KLQK-IKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDP--TKWSQDDLLAFASEIRRVNKPMVIAANKADAA-S---DE 230 (397)
T ss_dssp TSSC-CCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCG--GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-C---HH
T ss_pred hhcC-ccHHHHHHHHhcccCCCHHHHHHHHHHhccCCcc--ccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-c---hH
Confidence 2221 1111 11 23456666777777763 47888887778888788889999999999864 1 23
Q ss_pred ChhhHHHHHHhhCCCeEEEeccccchhhcCC---------------------ChhHHH-------HHHHhccccccHHHH
Q 015465 243 FLPKIHAWVQEHGGEQIIPFSCALERNLADM---------------------PPDEAA-------KYCEENKVQSALPKI 294 (406)
Q Consensus 243 ~v~~i~~~~~~~~~~~~v~~sa~~E~~l~~l---------------------~~~~~~-------~~~~~~~~~~~l~~l 294 (406)
+++++.+..... +.+++++||..|.++.+| +++++. +||..+| ++|++++
T Consensus 231 ~l~~l~~~~~~~-~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~~g-~~g~~~~ 308 (397)
T 1wxq_A 231 QIKRLVREEEKR-GYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFG-STGVQEV 308 (397)
T ss_dssp HHHHHHHHHHHT-TCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSSSS-SCSHHHH
T ss_pred HHHHHHHHHhhc-CCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHHhC-cchHHHH
Confidence 455666544332 468999999999999874 344443 5666788 8999999
Q ss_pred HH-HHHcccCcEEEeecCC----------CCeeeEEecCCCCcchhcccchhhhhhccEEEEEeccchhhhcCChHHHhh
Q 015465 295 IK-TGFSAINLIYFFTAGP----------DEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKV 363 (406)
Q Consensus 295 i~-~~~~~L~li~~fT~g~----------~e~raw~i~~gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~~k~ 363 (406)
|+ +.|++|+||+|||+|+ +|++||++++|+||+|+|++|||||+++|+||+ ++
T Consensus 309 i~~~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~----------------~~ 372 (397)
T 1wxq_A 309 INRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAI----------------NA 372 (397)
T ss_dssp HHHHHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEE----------------ET
T ss_pred HHHHHHHHhCCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhH----------------Hh
Confidence 95 6699999999999873 477999999999999999999999999999998 23
Q ss_pred cCceeeeeeeeeeeccCCCccccCCCcEEEEE
Q 015465 364 NVLISRFIIIISILSCPSCHCKSTEFACHWLR 395 (406)
Q Consensus 364 ~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
+|+.|. |+. +..++||++.|.
T Consensus 373 ~~~~~~-g~~----------~~l~dgDvv~i~ 393 (397)
T 1wxq_A 373 RTKRRV-GED----------YELQFNDIVKIV 393 (397)
T ss_dssp TTCSBC-CTT----------CCCCTTEEEEEE
T ss_pred cCCEEc-CCC----------ccccCCCEEEEE
Confidence 466665 777 999999987764
No 6
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-44 Score=360.17 Aligned_cols=289 Identities=17% Similarity=0.238 Sum_probs=206.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
..|||||.||+|||||||+|||..+.+++|||||++|+.|.+.++|.+ ++++|+||+..+++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~-----------------i~l~D~pGl~~~a~~ 135 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK-----------------IQMLDLPGIIDGAKD 135 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE-----------------EEEEECGGGCCC---
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE-----------------EEEEeCCCccCCchh
Confidence 489999999999999999999999888999999999999999998753 899999999999888
Q ss_pred CCCCcchhhhhHHhhhchhhhhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHH
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIE 184 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v 184 (406)
+.++++++++.++.+|++++|+|++ +|..+++.+..|+...++...++......+....+
T Consensus 136 ~~~~g~~~l~~i~~ad~il~vvD~~------------~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~-------- 195 (376)
T 4a9a_A 136 GRGRGKQVIAVARTCNLLFIILDVN------------KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG-------- 195 (376)
T ss_dssp --CHHHHHHHHHHHCSEEEEEEETT------------SHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS--------
T ss_pred hhHHHHHHHHHHHhcCccccccccC------------ccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh--------
Confidence 8889999999999999999999985 68888888887776555432111100000000000
Q ss_pred HHHHHHHHHHhhCCCccccCCCChhHHHHHHHhhhhccccEEeeeccchhhhhhhhccChhhHHHHHHhhCCCeEEEecc
Q 015465 185 HELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSC 264 (406)
Q Consensus 185 ~~l~~~i~~~L~~g~~~~~~~~t~~e~e~i~~~~~~~~kpi~~~~N~~~~~~~~~~~~~v~~i~~~~~~~~~~~~v~~sa 264 (406)
-+.-........++++++..+....+++.+|++|.+|+.++++.. .+...... ..+++.+++
T Consensus 196 ---------gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d-------~~~~~~~~--~~p~i~v~n 257 (376)
T 4a9a_A 196 ---------GISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLID-------VLEASSRR--YMPAIYVLN 257 (376)
T ss_dssp ---------CEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHH-------HHTTTTCE--EECEEEEEE
T ss_pred ---------hhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHH-------HHHHHHhh--ccceEEEEe
Confidence 000011112234566676666666778889999999888765431 11111111 235666665
Q ss_pred ccchhhcCCChhHHHH------HHHhcc-ccccHHHHHHHHHcccCcEEEeecCCCCeeeEEecCCCCcc-----hhccc
Q 015465 265 ALERNLADMPPDEAAK------YCEENK-VQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAP-----QAAGT 332 (406)
Q Consensus 265 ~~E~~l~~l~~~~~~~------~~~~~~-~~~~l~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~-----~aAg~ 332 (406)
+.+. ++.++... |+..++ .+++|++|++++|++||||+|||+||+|+||||+|.|++|+ |+|+.
T Consensus 258 Kid~----~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~ 333 (376)
T 4a9a_A 258 KIDS----LSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQ 333 (376)
T ss_dssp CGGG----SCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCBHHHHHHH
T ss_pred cccc----cCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCcHHHHHHH
Confidence 5432 11222221 122233 58899999999999999999999999999999987665554 56999
Q ss_pred chhhhhhccEEEEEeccchhhhcCChHHHhhcCceeeeeeeeeeeccCCCccccCCCcEEEE
Q 015465 333 IHTDFERGFICAEVMKFDDLKELGSEPAVKVNVLISRFIIIISILSCPSCHCKSTEFACHWL 394 (406)
Q Consensus 333 IHsD~~kgFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
||+||.++|+||+||+.. +|.+| |+.|+. |..++||++.|
T Consensus 334 ih~d~~~~F~~a~v~Gs~----------~K~~~--r~eGkd----------yvv~DGDVi~i 373 (376)
T 4a9a_A 334 IHKSLVDDFRNALVYGSS----------VKHQP--QYVGLS----------HILEDEDVVTI 373 (376)
T ss_dssp HCGGGGGGEEEEEEESTT----------SSSSS--EEECTT----------CBCCTTCEEEE
T ss_pred HHHHHHHhhhHhhhcCcc----------cCCCC--CccCCC----------cEEcCCCEEEE
Confidence 999999999999999654 67777 677877 99999999876
No 7
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.59 E-value=3e-16 Score=149.45 Aligned_cols=170 Identities=15% Similarity=0.247 Sum_probs=105.1
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCC-CcCc
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS-AVPA 88 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~-~~~~ 88 (406)
..-.+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ....
T Consensus 30 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (266)
T 4g1u_C 30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGY-----------LSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAF 98 (266)
T ss_dssp EEEEEETTCEEEEECCTTSCHHHHHHHHTSS-----------SCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCC
Confidence 3445789999999999999999999999999 7899999999998764321 2455554 2333
Q ss_pred eeEEEeeccccccccCCCCC---cchhhhhHHhhh--------------chhhhhccc-C------CCceEeecCCCCCC
Q 015465 89 FLEIHDIAGLVRGAHEGQGL---GNSFLSHIRAVD--------------GIFHVLRAF-E------DPDIIHVDDSVDPV 144 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l---~~~~l~~l~~ad--------------~ll~vvda~-~------~~~il~ld~~~dP~ 144 (406)
.+++.|...+.......... ....++.+...+ -.+.+++|+ . +|+++++| ||+
T Consensus 99 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllD---EPt 175 (266)
T 4g1u_C 99 PFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLD---EPT 175 (266)
T ss_dssp CCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEEC---CCC
T ss_pred CCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe---Ccc
Confidence 45555544433211110000 000111110000 014455555 4 89999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+.+|+.........+..+. +.-...+ .-.+|++..+..+||++ .+|.+|+++..++
T Consensus 176 s~LD~~~~~~i~~~l~~l~---~~~~~tv-i~vtHdl~~~~~~~d~v-~vl~~G~i~~~g~ 231 (266)
T 4g1u_C 176 SALDLYHQQHTLRLLRQLT---RQEPLAV-CCVLHDLNLAALYADRI-MLLAQGKLVACGT 231 (266)
T ss_dssp SSCCHHHHHHHHHHHHHHH---HHSSEEE-EEECSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHH---HcCCCEE-EEEEcCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9999998644433221111 0000011 11239999999999999 8899999987654
No 8
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.55 E-value=1.1e-15 Score=143.28 Aligned_cols=167 Identities=12% Similarity=0.127 Sum_probs=105.8
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------h--hhccCCC-CcCc
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKS-AVPA 88 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~p~~-~~~~ 88 (406)
.-.+++|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.||. ..+.
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 94 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGL-----------VRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCC
Confidence 445789999999999999999999999999 789999999999765321 1 2466765 3334
Q ss_pred eeEEEeeccccccccCCCC----CcchhhhhHH-hhhc--------------hhhhhccc-CCCceEeecCCCCCCchHH
Q 015465 89 FLEIHDIAGLVRGAHEGQG----LGNSFLSHIR-AVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~----l~~~~l~~l~-~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~~ld 148 (406)
.+++.|...+......... ....+++.+. ..+. .+.+++|+ .+|+++++| ||++.+|
T Consensus 95 ~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD---EPts~LD 171 (240)
T 1ji0_A 95 ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD---EPSLGLA 171 (240)
T ss_dssp TSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE---CTTTTCC
T ss_pred CCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCC
Confidence 4555565444321110000 0011112111 1111 14566666 799999999 9999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
+...+.....+..+ .+-...+ .-.+|+...+..+||++ .+|++|+++..+
T Consensus 172 ~~~~~~l~~~l~~~----~~~g~tv-i~vtHd~~~~~~~~d~v-~~l~~G~i~~~g 221 (240)
T 1ji0_A 172 PILVSEVFEVIQKI----NQEGTTI-LLVEQNALGALKVAHYG-YVLETGQIVLEG 221 (240)
T ss_dssp HHHHHHHHHHHHHH----HHTTCCE-EEEESCHHHHHHHCSEE-EEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHH----HHCCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEEc
Confidence 99865443332111 1101111 11239999999999998 788999887654
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.55 E-value=4.8e-16 Score=147.74 Aligned_cols=169 Identities=16% Similarity=0.196 Sum_probs=104.8
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh-------hhh--hhccCCC-Cc
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------WLC--QLFKPKS-AV 86 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~-------~l~--~~~~p~~-~~ 86 (406)
....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++. .+. ..|.||. ..
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l 111 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLL-----------EDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL 111 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCC
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC-----------CCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcC
Confidence 3445789999999999999999999999999 7899999999997652 111 2466665 23
Q ss_pred CceeEEEeeccccc----cccCC--CCCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCc
Q 015465 87 PAFLEIHDIAGLVR----GAHEG--QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 87 ~~~i~lvD~~gl~~----~~~~~--~~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
+..+++.|...+.. +.... ......+++.+...+. .+.+++|+ .+|+++++| ||++
T Consensus 112 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLD---EPts 188 (263)
T 2olj_A 112 FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD---EPTS 188 (263)
T ss_dssp CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTT
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEe---CCcc
Confidence 33445555443321 00000 0000111111111110 14466666 799999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.+|+...+.....+..+ .+. ...+ .-.+|++..+..+||++ .+|.+|+++..++
T Consensus 189 ~LD~~~~~~~~~~l~~l---~~~-g~tv-i~vtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 242 (263)
T 2olj_A 189 ALDPEMVGEVLSVMKQL---ANE-GMTM-VVVTHEMGFAREVGDRV-LFMDGGYIIEEGK 242 (263)
T ss_dssp TSCHHHHHHHHHHHHHH---HHT-TCEE-EEECSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHH---HhC-CCEE-EEEcCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999865443322111 000 1111 11239999999999999 8889998876543
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.55 E-value=7.5e-16 Score=152.38 Aligned_cols=170 Identities=16% Similarity=0.212 Sum_probs=107.6
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----------hhhccCCC-C
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLFKPKS-A 85 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----------~~~~~p~~-~ 85 (406)
..-.+.+|+++||+||||||||||+++|+|+ ..|++|.|.++|.++..+ ...|.+|. .
T Consensus 47 vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL-----------~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~ 115 (366)
T 3tui_C 47 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-----------ERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 115 (366)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCC
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCc
Confidence 3456889999999999999999999999999 789999999999875321 12456665 3
Q ss_pred cCceeEEEeeccccccccCC--C---CCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCc
Q 015465 86 VPAFLEIHDIAGLVRGAHEG--Q---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~--~---~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
....+++.|...+....... . .....+++.+...+. .+.+++|. .+|+++++| ||++
T Consensus 116 l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlD---EPTs 192 (366)
T 3tui_C 116 LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD---QATS 192 (366)
T ss_dssp CCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEE---STTT
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCc
Confidence 33345555544332111000 0 000111111111111 14566666 799999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.+|+.....++..+..+.+ +....+ .-.+|++..+..+||++ .+|++|+++..|+
T Consensus 193 ~LD~~~~~~i~~lL~~l~~---~~g~Ti-i~vTHdl~~~~~~aDrv-~vl~~G~iv~~g~ 247 (366)
T 3tui_C 193 ALDPATTRSILELLKDINR---RLGLTI-LLITHEMDVVKRICDCV-AVISNGELIEQDT 247 (366)
T ss_dssp TSCHHHHHHHHHHHHHHHH---HSCCEE-EEEESCHHHHHHHCSEE-EEEETTEEEECCB
T ss_pred cCCHHHHHHHHHHHHHHHH---hCCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9999986544333221111 001011 11239999999999999 8999999887664
No 11
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.54 E-value=5.1e-16 Score=147.50 Aligned_cols=169 Identities=18% Similarity=0.260 Sum_probs=106.4
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh------------------hhh-
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE------------------WLC- 77 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~------------------~l~- 77 (406)
..-.+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++. .+.
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 93 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEccccccccccccccChhhHHHHhc
Confidence 4456889999999999999999999999999 7899999999987653 111
Q ss_pred -hhccCCC-CcCceeEEEeeccccc----cccCC--CCCcchhhhhHHhhhc---------------hhhhhccc-CCCc
Q 015465 78 -QLFKPKS-AVPAFLEIHDIAGLVR----GAHEG--QGLGNSFLSHIRAVDG---------------IFHVLRAF-EDPD 133 (406)
Q Consensus 78 -~~~~p~~-~~~~~i~lvD~~gl~~----~~~~~--~~l~~~~l~~l~~ad~---------------ll~vvda~-~~~~ 133 (406)
..|.+|. ..+..+++.|...+.. +.... ......+++.+...+. .+.+++|+ .+|+
T Consensus 94 ~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 173 (262)
T 1b0u_A 94 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPD 173 (262)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred ceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 2466665 3344455555443321 00000 0000111221111111 14566666 7999
Q ss_pred eEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 134 il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++++| ||++.+|+...+.....+..+. +. ...+.. .+|++..+..+||++ .+|.+|+++..++
T Consensus 174 lllLD---EPts~LD~~~~~~~~~~l~~l~---~~-g~tvi~-vtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 174 VLLFD---EPTSALDPELVGEVLRIMQQLA---EE-GKTMVV-VTHEMGFARHVSSHV-IFLHQGKIEEEGD 236 (262)
T ss_dssp EEEEE---STTTTSCHHHHHHHHHHHHHHH---HT-TCCEEE-ECSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred EEEEe---CCCccCCHHHHHHHHHHHHHHH---hC-CCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999 9999999998654443322111 00 111111 239999999999999 8889998876553
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.54 E-value=8.4e-16 Score=151.86 Aligned_cols=171 Identities=16% Similarity=0.194 Sum_probs=109.1
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh----hh-----hhhccCCC-C
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE----WL-----CQLFKPKS-A 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~----~l-----~~~~~p~~-~ 85 (406)
...-.+.+|++++|+||||||||||+++|+|+ ..|++|.|.++|.++. .. ...|.+|. .
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~ 90 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGF-----------EQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGV 90 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCC
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCEECcccccccchhhCCEEEEeCCCc
Confidence 34456889999999999999999999999999 7899999999998651 11 12455555 3
Q ss_pred cCceeEEEeeccccccccCCC--C---CcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCc
Q 015465 86 VPAFLEIHDIAGLVRGAHEGQ--G---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVR 145 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~~--~---l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~ 145 (406)
.+..+++.|...+........ . .....++.+...+. -+.+++|+ .+|+++++| ||++
T Consensus 91 l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD---EPts 167 (359)
T 3fvq_A 91 LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD---EPFS 167 (359)
T ss_dssp CCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTT
T ss_pred CCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcc
Confidence 444566666655432211100 0 00111111111111 14566666 799999999 9999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.+|....+..+..+. +........+ .-.+|++.++..+||+| .+|++|+++..|+
T Consensus 168 ~LD~~~r~~l~~~l~---~~~~~~g~tv-i~vTHd~~ea~~~aDri-~vl~~G~i~~~g~ 222 (359)
T 3fvq_A 168 ALDEQLRRQIREDMI---AALRANGKSA-VFVSHDREEALQYADRI-AVMKQGRILQTAS 222 (359)
T ss_dssp TSCHHHHHHHHHHHH---HHHHHTTCEE-EEECCCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred cCCHHHHHHHHHHHH---HHHHhCCCEE-EEEeCCHHHHHHHCCEE-EEEECCEEEEEeC
Confidence 999988644433221 1111111111 11249999999999999 8999999987764
No 13
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.52 E-value=6.4e-16 Score=144.50 Aligned_cols=170 Identities=19% Similarity=0.217 Sum_probs=103.8
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----------hhhccCCC-
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPKS- 84 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~p~~- 84 (406)
....+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++... ...|.+|.
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~ 92 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL-----------DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTC
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCC
Confidence 3456889999999999999999999999999 789999999999765321 12466665
Q ss_pred CcCceeEEEeeccccccccC--C---CCCcc---hhhhhHHhhhc---------------hhhhhccc-CCCceEeecCC
Q 015465 85 AVPAFLEIHDIAGLVRGAHE--G---QGLGN---SFLSHIRAVDG---------------IFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~~~~--~---~~l~~---~~l~~l~~ad~---------------ll~vvda~-~~~~il~ld~~ 140 (406)
..+..+++.|...+...... . ..... ..+..+...+. .+.+++|+ .+|+++++|
T Consensus 93 ~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllD-- 170 (235)
T 3tif_A 93 NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILAD-- 170 (235)
T ss_dssp CCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE--
T ss_pred ccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe--
Confidence 33334555554433210000 0 00000 01111110000 14566665 799999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
||++.+|+...+.....+..+.+ .....+ .-.+|++.. ..+||++ .+|++|+++..+..
T Consensus 171 -EPts~LD~~~~~~i~~~l~~l~~---~~g~tv-i~vtHd~~~-~~~~d~i-~~l~~G~i~~~~~~ 229 (235)
T 3tif_A 171 -QPTWALDSKTGEKIMQLLKKLNE---EDGKTV-VVVTHDINV-ARFGERI-IYLKDGEVEREEKL 229 (235)
T ss_dssp -STTTTSCHHHHHHHHHHHHHHHH---HHCCEE-EEECSCHHH-HTTSSEE-EEEETTEEEEEEEC
T ss_pred -CCcccCCHHHHHHHHHHHHHHHH---HcCCEE-EEEcCCHHH-HHhCCEE-EEEECCEEEEEcCh
Confidence 99999999986554433221111 001111 112399874 5789999 88899998766544
No 14
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.52 E-value=1.1e-15 Score=144.78 Aligned_cols=168 Identities=17% Similarity=0.228 Sum_probs=103.7
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh----hh--hhccCCC-CcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKPKS-AVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~----l~--~~~~p~~-~~~~~i 90 (406)
.-.+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++.. +. ..|.||. ..+..+
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTL-----------IKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 455789999999999999999999999999 78999999999976532 11 2466665 233344
Q ss_pred EEEeeccccccccC-C-C---CCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHHH
Q 015465 91 EIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (406)
Q Consensus 91 ~lvD~~gl~~~~~~-~-~---~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~i 150 (406)
++.|...+...... . . .....+++.+...+ -.+.+++|+ .+|+++++| ||++.+|+.
T Consensus 104 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD---EPts~LD~~ 180 (256)
T 1vpl_A 104 QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD---EPTSGLDVL 180 (256)
T ss_dssp BHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE---STTTTCCHH
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCccccCHH
Confidence 55554433210000 0 0 00001111111111 014556666 799999999 999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
..+.....+..+ ..-...+ .-.+|++..+..+|+++ .+|.+|+++..++
T Consensus 181 ~~~~l~~~l~~l----~~~g~ti-iivtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 229 (256)
T 1vpl_A 181 NAREVRKILKQA----SQEGLTI-LVSSHNMLEVEFLCDRI-ALIHNGTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHHH----HHTTCEE-EEEECCHHHHTTTCSEE-EEEETTEEEEEEE
T ss_pred HHHHHHHHHHHH----HhCCCEE-EEEcCCHHHHHHHCCEE-EEEECCEEEEecC
Confidence 865443332211 1001111 11239999999999998 7889998876543
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.52 E-value=8.3e-16 Score=145.62 Aligned_cols=170 Identities=15% Similarity=0.140 Sum_probs=106.6
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--------hhhccCCCC-cC
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKSA-VP 87 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~p~~~-~~ 87 (406)
..-.+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++... ...|.||.. .+
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGF-----------LKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 94 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccC
Confidence 3455789999999999999999999999999 789999999999765321 124677763 33
Q ss_pred ceeEEEeeccccccc-cCC-----------CC------CcchhhhhHHhhhc--------------hhhhhccc-CCCce
Q 015465 88 AFLEIHDIAGLVRGA-HEG-----------QG------LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDI 134 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~-~~~-----------~~------l~~~~l~~l~~ad~--------------ll~vvda~-~~~~i 134 (406)
..+++.|...+.... ..+ .. ....+++.+...+. .+.+++|+ .+|++
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~l 174 (257)
T 1g6h_A 95 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKM 174 (257)
T ss_dssp GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 345666654432111 000 00 00011111111110 14566666 79999
Q ss_pred EeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 135 l~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
+++| ||++.+|+...+.....+..+. +. ...+.. .+|++..+..+||++ .+|++|+++..++.
T Consensus 175 llLD---EPts~LD~~~~~~l~~~l~~l~---~~-g~tvi~-vtHd~~~~~~~~d~v-~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 175 IVMD---EPIAGVAPGLAHDIFNHVLELK---AK-GITFLI-IEHRLDIVLNYIDHL-YVMFNGQIIAEGRG 237 (257)
T ss_dssp EEEE---STTTTCCHHHHHHHHHHHHHHH---HT-TCEEEE-ECSCCSTTGGGCSEE-EEEETTEEEEEEES
T ss_pred EEEe---CCccCCCHHHHHHHHHHHHHHH---HC-CCEEEE-EecCHHHHHHhCCEE-EEEECCEEEEEeCH
Confidence 9999 9999999998654433321110 00 111101 139999888999998 78899988766543
No 16
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.51 E-value=9e-16 Score=146.75 Aligned_cols=171 Identities=15% Similarity=0.195 Sum_probs=105.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh--h-----hh--hhccCCCC-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--W-----LC--QLFKPKSA- 85 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~--~-----l~--~~~~p~~~- 85 (406)
+..-.+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++. . +. ..|.+|..
T Consensus 26 ~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl-----------~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~ 94 (275)
T 3gfo_A 26 GINMNIKRGEVTAILGGNGVGKSTLFQNFNGI-----------LKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPD 94 (275)
T ss_dssp EEEEEEETTSEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGG
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcc
Confidence 33456789999999999999999999999999 7899999999998762 1 11 24666652
Q ss_pred -cCceeEEEeeccccccccC--CC---CCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCC
Q 015465 86 -VPAFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 86 -~~~~i~lvD~~gl~~~~~~--~~---~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
.....++.|...+...... .. ......++.+...+. .+.+++|+ .+|+++++| ||+
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLD---EPt 171 (275)
T 3gfo_A 95 NQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILD---EPT 171 (275)
T ss_dssp GTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEE---CTT
T ss_pred cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---Ccc
Confidence 1223455554333211100 00 000011111110000 14455665 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+.+|+.........+..+.+ +-...+ .-.+|++..+..+||++ .+|.+|+++..++
T Consensus 172 s~LD~~~~~~i~~~l~~l~~---~~g~tv-i~vtHdl~~~~~~~drv-~~l~~G~i~~~g~ 227 (275)
T 3gfo_A 172 AGLDPMGVSEIMKLLVEMQK---ELGITI-IIATHDIDIVPLYCDNV-FVMKEGRVILQGN 227 (275)
T ss_dssp TTCCHHHHHHHHHHHHHHHH---HHCCEE-EEEESCCSSGGGGCSEE-EEEETTEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHHh---hCCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999986544333221110 001111 11239999999999999 8899999987764
No 17
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.51 E-value=8.1e-16 Score=153.03 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=107.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
...-.+.+|++++|+||||||||||+++|+|+ ..|++|.|.++|.++.... ..|.+|. ..+..
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ 89 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-----------ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPH 89 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTT
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHcC-----------CCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCC
Confidence 34456889999999999999999999999999 7899999999998764432 2355554 33444
Q ss_pred eEEEeeccccccccCC--C---CCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAHEG--Q---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~--~---~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+....... . .....+++.+...+. .+.+++|+ .+|+++++| ||++.+|.
T Consensus 90 ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD---EPts~LD~ 166 (381)
T 3rlf_A 90 LSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD---EPLSNLDA 166 (381)
T ss_dssp SCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE---STTTTSCH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE---CCCcCCCH
Confidence 5666655443111100 0 000011111111110 13455555 699999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
...+..+..+..+.+ .....+ .-.+|++.++..+||+| .+|++|+++..++
T Consensus 167 ~~~~~l~~~l~~l~~---~~g~ti-i~vTHd~~ea~~~aDri-~vl~~G~i~~~g~ 217 (381)
T 3rlf_A 167 ALRVQMRIEISRLHK---RLGRTM-IYVTHDQVEAMTLADKI-VVLDAGRVAQVGK 217 (381)
T ss_dssp HHHHHHHHHHHHHHH---HHCCEE-EEECSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHH---hCCCEE-EEEECCHHHHHHhCCEE-EEEECCEEEEEeC
Confidence 886544433222211 111111 11249999999999999 9999999887654
No 18
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.51 E-value=2.7e-15 Score=140.70 Aligned_cols=169 Identities=15% Similarity=0.242 Sum_probs=103.7
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----hhhccCCC-CcCcee
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS-AVPAFL 90 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~~~~~p~~-~~~~~i 90 (406)
....+++ +++||+||||||||||+++|+|. ..|++|.|.++|.++... ...|.||. ..+..+
T Consensus 18 isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~l 85 (240)
T 2onk_A 18 VDFEMGR-DYCVLLGPTGAGKSVFLELIAGI-----------VKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85 (240)
T ss_dssp EEEEECS-SEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTS
T ss_pred eEEEECC-EEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCC
Confidence 3445788 99999999999999999999999 789999999999765321 12466665 233334
Q ss_pred EEEeeccccccccC---CCCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHHHHH
Q 015465 91 EIHDIAGLVRGAHE---GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (406)
Q Consensus 91 ~lvD~~gl~~~~~~---~~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~ 152 (406)
++.|...+...... .......+++.+...+ -.+.+++|+ .+|+++++| ||++.+|+...
T Consensus 86 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD---EPts~LD~~~~ 162 (240)
T 2onk_A 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD---EPLSAVDLKTK 162 (240)
T ss_dssp CHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE---STTSSCCHHHH
T ss_pred cHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHH
Confidence 55554433211100 0000001111111000 014456665 799999999 99999999986
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+.....+..+. ......+.. .+|+...+..+||++ .+|++|+++..++
T Consensus 163 ~~~~~~l~~l~---~~~g~tvi~-vtHd~~~~~~~~d~i-~~l~~G~i~~~g~ 210 (240)
T 2onk_A 163 GVLMEELRFVQ---REFDVPILH-VTHDLIEAAMLADEV-AVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHH---HHHTCCEEE-EESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHH---HhcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 55443322111 100111111 239999999999999 8889998876553
No 19
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.51 E-value=6.8e-16 Score=143.27 Aligned_cols=167 Identities=21% Similarity=0.209 Sum_probs=100.4
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh--------h---hhhccCCC-
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------L---CQLFKPKS- 84 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~--------l---~~~~~p~~- 84 (406)
....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++.. + ...|.||.
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 91 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLL-----------DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFH 91 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHHHHTTS-----------SCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCc
Confidence 3445789999999999999999999999999 78999999999876521 1 12466665
Q ss_pred CcCceeEEEeeccccccccC---C--CCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCC
Q 015465 85 AVPAFLEIHDIAGLVRGAHE---G--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~~~~---~--~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
..+..+++.|...+...... . ......+++.+...+ -.+.+++|+ .+|+++++| ||+
T Consensus 92 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt 168 (224)
T 2pcj_A 92 YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFAD---EPT 168 (224)
T ss_dssp CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEE---STT
T ss_pred ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCC
Confidence 23333455554433211000 0 000001111111101 114566666 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
+.+|....+.....+..+. +. ...+.. .+|+...+ .+||++ .+|++|+++..|
T Consensus 169 ~~LD~~~~~~~~~~l~~l~---~~-g~tvi~-vtHd~~~~-~~~d~v-~~l~~G~i~~~g 221 (224)
T 2pcj_A 169 GNLDSANTKRVMDIFLKIN---EG-GTSIVM-VTHERELA-ELTHRT-LEMKDGKVVGEI 221 (224)
T ss_dssp TTCCHHHHHHHHHHHHHHH---HT-TCEEEE-ECSCHHHH-TTSSEE-EEEETTEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHH---HC-CCEEEE-EcCCHHHH-HhCCEE-EEEECCEEEEEe
Confidence 9999988644433221110 00 111111 13988776 788988 778888876544
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.50 E-value=4.5e-15 Score=146.86 Aligned_cols=171 Identities=13% Similarity=0.174 Sum_probs=109.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
+..-.+++|++++|+||||||||||+++|+|. ..|++|.|.++|.++..+. ..|.+|. ..+..
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 89 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI-----------YKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPH 89 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTT
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC-----------CCCCccEEEECCEECCCCChhhCcEEEEecCcccCCC
Confidence 34456889999999999999999999999999 7899999999997764322 2455665 34445
Q ss_pred eEEEeeccccccccC---C--CCCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAHE---G--QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~~---~--~~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+...... . ......+++.+...+. -+.+++|+ .+|+++++| ||++.+|.
T Consensus 90 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD---EP~s~LD~ 166 (359)
T 2yyz_A 90 MTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD---EPLSNLDA 166 (359)
T ss_dssp SCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCH
Confidence 566666554321110 0 0000111111111111 14566666 799999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
...+.....+..+.+ .....+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 167 ~~r~~l~~~l~~l~~---~~g~tv-i~vTHd~~~~~~~adri-~vl~~G~i~~~g~ 217 (359)
T 2yyz_A 167 NLRMIMRAEIKHLQQ---ELGITS-VYVTHDQAEAMTMASRI-AVFNQGKLVQYGT 217 (359)
T ss_dssp HHHHHHHHHHHHHHH---HHCCEE-EEEESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHH---hcCCEE-EEEcCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 886544433222111 111111 11249999999999999 8899999876654
No 21
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.50 E-value=2.4e-15 Score=141.80 Aligned_cols=167 Identities=15% Similarity=0.200 Sum_probs=102.0
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------hhhccCCCC-cCc
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPKSA-VPA 88 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~~~~~p~~~-~~~ 88 (406)
....+.+|++++|+||||||||||+++|+|. ..|+ |.|.++|.++... ...|.||.. .+.
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-----------~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 86 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM-----------TSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF 86 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCT
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCC
Confidence 3445789999999999999999999999999 7899 9999999875321 124666653 333
Q ss_pred eeEEEeeccccccccCCCCCcchhhhhHHhhh--------------chhhhhccc-CCCc-------eEeecCCCCCCch
Q 015465 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPD-------IIHVDDSVDPVRD 146 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~-------il~ld~~~dP~~~ 146 (406)
.+++.|...+.............+++.+...+ -.+.+++++ .+|+ ++++| ||++.
T Consensus 87 ~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD---EPts~ 163 (249)
T 2qi9_C 87 ATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD---EPMNS 163 (249)
T ss_dssp TCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES---STTTT
T ss_pred CCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE---CCccc
Confidence 44555544432111000000001111111101 013455555 5788 99999 99999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
+|+...+.....+..+. +. ...+.. .+|+...+..+|+++ .+|++|+++..+
T Consensus 164 LD~~~~~~l~~~l~~l~---~~-g~tvii-vtHd~~~~~~~~d~v-~~l~~G~i~~~g 215 (249)
T 2qi9_C 164 LDVAQQSALDKILSALS---QQ-GLAIVM-SSHDLNHTLRHAHRA-WLLKGGKMLASG 215 (249)
T ss_dssp CCHHHHHHHHHHHHHHH---HT-TCEEEE-ECSCHHHHHHHCSEE-EEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHH---hC-CCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeC
Confidence 99998644433221110 00 111111 239999999999998 788999887654
No 22
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.49 E-value=4.7e-15 Score=146.19 Aligned_cols=170 Identities=14% Similarity=0.194 Sum_probs=107.7
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----hhhccCCC-CcCcee
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS-AVPAFL 90 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~~~~~p~~-~~~~~i 90 (406)
..-.+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++..+ ...|.+|. ..+..+
T Consensus 19 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 87 (348)
T 3d31_A 19 LSLKVESGEYFVILGPTGAGKTLFLELIAGF-----------HVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87 (348)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTS
T ss_pred eEEEEcCCCEEEEECCCCccHHHHHHHHHcC-----------CCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCC
Confidence 3445789999999999999999999999999 789999999999765322 12466665 344455
Q ss_pred EEEeeccccccccC-CC-CCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHHHHHH
Q 015465 91 EIHDIAGLVRGAHE-GQ-GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAE 153 (406)
Q Consensus 91 ~lvD~~gl~~~~~~-~~-~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~e 153 (406)
++.|...+...... .. .....+++.+...+ -.+.+++|+ .+|+++++| ||++.+|....+
T Consensus 88 tv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD---EP~s~LD~~~~~ 164 (348)
T 3d31_A 88 NVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD---EPLSALDPRTQE 164 (348)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE---SSSTTSCHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHHHHH
Confidence 66665544211100 00 00011111111111 114566666 799999999 999999998865
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 154 LRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 154 l~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.....+..+.+ +....+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 165 ~l~~~l~~l~~---~~g~ti-i~vTHd~~~~~~~adri-~vl~~G~i~~~g~ 211 (348)
T 3d31_A 165 NAREMLSVLHK---KNKLTV-LHITHDQTEARIMADRI-AVVMDGKLIQVGK 211 (348)
T ss_dssp HHHHHHHHHHH---HTTCEE-EEEESCHHHHHHHCSEE-EEESSSCEEEEEC
T ss_pred HHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 44433221111 101111 11249999999999999 8899999876654
No 23
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.48 E-value=2.1e-15 Score=148.92 Aligned_cols=171 Identities=15% Similarity=0.180 Sum_probs=106.6
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
+..-.+.+|++++|+||||||||||+++|+|+ ..|++|.|.++|.++.... ..|.+|. ..+..
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 101 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGL-----------ERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQH 101 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTT
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECCEECCcCChhhCcEEEEecCcccCCC
Confidence 34456789999999999999999999999999 7899999999997654321 1345554 23334
Q ss_pred eEEEeeccccccccC---C--CCCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAHE---G--QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~~---~--~~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+...... . ......+++.+...+. -+.+++|+ .+|+++++| ||++.+|.
T Consensus 102 ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~LD~ 178 (355)
T 1z47_A 102 MTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFD---EPFAAIDT 178 (355)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTCCSSH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCH
Confidence 555555443211000 0 0000011111111111 14456666 799999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
...+.....+..+.+ .....+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 179 ~~r~~l~~~l~~l~~---~~g~tv-i~vTHd~~~a~~~adri-~vl~~G~i~~~g~ 229 (355)
T 1z47_A 179 QIRRELRTFVRQVHD---EMGVTS-VFVTHDQEEALEVADRV-LVLHEGNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHHHHHHH---HHTCEE-EEECSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHH---hcCCEE-EEECCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 886554443322211 111111 11249999999999999 8899999876654
No 24
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.48 E-value=3.4e-15 Score=148.38 Aligned_cols=170 Identities=16% Similarity=0.191 Sum_probs=104.3
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCcee
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAFL 90 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~i 90 (406)
..-.+.+|++++|+||||||||||+++|+|+ ..|++|.|.++|.++..+. ..|.+|. ..+..+
T Consensus 30 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 98 (372)
T 1v43_A 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-----------EEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 98 (372)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGGTEEEEEC------CC
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCC
Confidence 4456789999999999999999999999999 7899999999997754321 2355554 233344
Q ss_pred EEEeeccccccccCC--C---CCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCchHHHH
Q 015465 91 EIHDIAGLVRGAHEG--Q---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (406)
Q Consensus 91 ~lvD~~gl~~~~~~~--~---~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~~ld~i 150 (406)
++.|...+....... . .....+++.+...+. -+.+++|+ .+|+++++| ||++.+|..
T Consensus 99 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~LD~~ 175 (372)
T 1v43_A 99 TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD---EPLSNLDAK 175 (372)
T ss_dssp CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE---STTTTSCHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHH
Confidence 555554443111100 0 000111111111111 14455665 799999999 999999998
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
..+.....+..+.+ .....+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 176 ~r~~l~~~l~~l~~---~~g~tv-i~vTHd~~~a~~~adri-~vl~~G~i~~~g~ 225 (372)
T 1v43_A 176 LRVAMRAEIKKLQQ---KLKVTT-IYVTHDQVEAMTMGDRI-AVMNRGQLLQIGS 225 (372)
T ss_dssp HHHHHHHHHHHHHH---HHTCEE-EEEESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHH---hCCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 86554443222111 111111 11249999999999999 8899999876654
No 25
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.48 E-value=1.9e-15 Score=149.70 Aligned_cols=171 Identities=12% Similarity=0.208 Sum_probs=107.8
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-----hhccCCC-CcCce
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~p~~-~~~~~ 89 (406)
+....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++..+. ..|.+|. ..+..
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 89 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGI-----------YKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPH 89 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTT
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCC
Confidence 34456889999999999999999999999999 7899999999997764321 2355555 33444
Q ss_pred eEEEeeccccccccC---C--CCCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 90 LEIHDIAGLVRGAHE---G--QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 90 i~lvD~~gl~~~~~~---~--~~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
+++.|...+...... . ......+++.+...+. -+.+++|+ .+|+++++| ||++.+|.
T Consensus 90 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~LD~ 166 (362)
T 2it1_A 90 MTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD---EPLSNLDA 166 (362)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---SGGGGSCH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCH
Confidence 566665544211000 0 0000011111111111 14466666 799999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
...+.....+..+.+ .....+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 167 ~~r~~l~~~l~~l~~---~~g~tv-i~vTHd~~~a~~~adri-~vl~~G~i~~~g~ 217 (362)
T 2it1_A 167 LLRLEVRAELKRLQK---ELGITT-VYVTHDQAEALAMADRI-AVIREGEILQVGT 217 (362)
T ss_dssp HHHHHHHHHHHHHHH---HHTCEE-EEEESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHH---hCCCEE-EEECCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 886544443222211 111111 11249999999999999 8899999876654
No 26
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.46 E-value=3.5e-15 Score=148.45 Aligned_cols=170 Identities=14% Similarity=0.146 Sum_probs=107.3
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh------hh-----hhccCCC-
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC-----QLFKPKS- 84 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------l~-----~~~~p~~- 84 (406)
....+.+|++++|+||||||||||+++|+|+ ..|++|.|.++|.++.. +. ..|.+|.
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~ 90 (372)
T 1g29_1 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-----------EEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90 (372)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCC
T ss_pred eEEEEcCCCEEEEECCCCcHHHHHHHHHHcC-----------CCCCccEEEECCEECccccccccCCHhHCCEEEEeCCC
Confidence 3456789999999999999999999999999 78999999999976533 11 1355554
Q ss_pred CcCceeEEEeeccccccccC---C--CCCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCC
Q 015465 85 AVPAFLEIHDIAGLVRGAHE---G--QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~~~~---~--~~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
..+..+++.|...+...... . ......+++.+...+. -+.+++|+ .+|+++++| ||+
T Consensus 91 ~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~ 167 (372)
T 1g29_1 91 ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD---EPL 167 (372)
T ss_dssp CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEE---CTT
T ss_pred ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEC---CCC
Confidence 33344555565544211100 0 0000111111111111 14566666 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+.+|....+.....+..+.+ .....+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 168 s~LD~~~r~~l~~~l~~l~~---~~g~tv-i~vTHd~~~a~~~adri-~vl~~G~i~~~g~ 223 (372)
T 1g29_1 168 SNLDAKLRVRMRAELKKLQR---QLGVTT-IYVTHDQVEAMTMGDRI-AVMNRGVLQQVGS 223 (372)
T ss_dssp TTSCHHHHHHHHHHHHHHHH---HHTCEE-EEEESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHHH---hcCCEE-EEECCCHHHHHHhCCEE-EEEeCCEEEEeCC
Confidence 99999886554443222111 111111 11249999999999999 8899999876654
No 27
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.46 E-value=3.6e-15 Score=141.93 Aligned_cols=169 Identities=18% Similarity=0.135 Sum_probs=104.7
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----hhhccCCCC--cCcee
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKSA--VPAFL 90 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~~~~~p~~~--~~~~i 90 (406)
..-.+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++... ...|.||.. ....+
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGL-----------IEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE 94 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCC
Confidence 3456889999999999999999999999999 789999999999765321 124666652 23334
Q ss_pred EEEeecccccccc-CCCCC---cchhhhhHHhh--hc--------------hhhhhccc-CCCceEeecCCCCCCchHHH
Q 015465 91 EIHDIAGLVRGAH-EGQGL---GNSFLSHIRAV--DG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (406)
Q Consensus 91 ~lvD~~gl~~~~~-~~~~l---~~~~l~~l~~a--d~--------------ll~vvda~-~~~~il~ld~~~dP~~~ld~ 149 (406)
++.|...+..... ..... ...+++.+... +. .+.+++++ .+|+++++| ||++.+|+
T Consensus 95 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD---EPts~LD~ 171 (266)
T 2yz2_A 95 RVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILD---EPLVGLDR 171 (266)
T ss_dssp SHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTCCH
T ss_pred cHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CccccCCH
Confidence 5555443321110 00000 11112221111 11 14566666 799999999 99999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
...+.....+..+. .. ...+.. .+|+...+..+||++ .+|++|+++..++
T Consensus 172 ~~~~~l~~~l~~l~---~~-g~tii~-vtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 221 (266)
T 2yz2_A 172 EGKTDLLRIVEKWK---TL-GKTVIL-ISHDIETVINHVDRV-VVLEKGKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHHHHH---HT-TCEEEE-ECSCCTTTGGGCSEE-EEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHH---Hc-CCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 88644433221110 00 111111 139998888899998 7889998876543
No 28
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.45 E-value=5.9e-15 Score=145.86 Aligned_cols=171 Identities=15% Similarity=0.172 Sum_probs=107.2
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-----hh-----hhccCCC-
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC-----QLFKPKS- 84 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-----l~-----~~~~p~~- 84 (406)
.....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++.. .. ..|.+|.
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~ 91 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGL-----------DVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTS-----------SCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTS
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECcccccccCChhhCCEEEEeCCC
Confidence 34556889999999999999999999999999 78999999999976533 11 1355554
Q ss_pred CcCceeEEEeeccccccccC-C-C---CCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCC
Q 015465 85 AVPAFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 85 ~~~~~i~lvD~~gl~~~~~~-~-~---~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
..+..+++.|...+...... . . .....+++.+...+. -+.+++|+ .+|+++++| ||+
T Consensus 92 ~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLD---EP~ 168 (353)
T 1oxx_K 92 ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD---EPF 168 (353)
T ss_dssp CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STT
T ss_pred ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCc
Confidence 33444566665544321110 0 0 000111111111111 14566666 799999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+.+|....+.....+..+. ......+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 169 s~LD~~~r~~l~~~l~~l~---~~~g~tv-i~vTHd~~~~~~~adri-~vl~~G~i~~~g~ 224 (353)
T 1oxx_K 169 SNLDARMRDSARALVKEVQ---SRLGVTL-LVVSHDPADIFAIADRV-GVLVKGKLVQVGK 224 (353)
T ss_dssp TTSCGGGHHHHHHHHHHHH---HHHCCEE-EEEESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHH---HhcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9999987644433322111 1111111 11249999999999999 8899999876654
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.44 E-value=2.3e-14 Score=138.89 Aligned_cols=166 Identities=15% Similarity=0.148 Sum_probs=106.2
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~i 90 (406)
...+++|+++||+||||||||||+++|+|. .+|++|.|.++|.++..+. ..|.||.......
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl-----------~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 142 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRF-----------YDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTS-----------SCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSE
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcc
Confidence 345789999999999999999999999999 7899999999998764322 2577777443345
Q ss_pred EEEeeccccccccCCCCCcchhhhhHHhhh-------------------------chhhhhccc-CCCceEeecCCCCCC
Q 015465 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVD-------------------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (406)
Q Consensus 91 ~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad-------------------------~ll~vvda~-~~~~il~ld~~~dP~ 144 (406)
++.|...+......... ....++.....+ -.+.+++|+ .+|+++++| ||+
T Consensus 143 Tv~eNi~~~~~~~~~~~-~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLD---EPt 218 (306)
T 3nh6_A 143 TIADNIRYGRVTAGNDE-VEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLD---EAT 218 (306)
T ss_dssp EHHHHHHTTSTTCCHHH-HHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE---CCS
T ss_pred cHHHHHHhhcccCCHHH-HHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEE---CCc
Confidence 66665544322111000 000000000000 013455555 699999999 999
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
+.+|...+..+...+..+ .. ...+ .-.+|++..+.. ||+| .+|++|+++..|+.
T Consensus 219 s~LD~~~~~~i~~~l~~l---~~--~~Tv-i~itH~l~~~~~-aD~i-~vl~~G~iv~~G~~ 272 (306)
T 3nh6_A 219 SALDTSNERAIQASLAKV---CA--NRTT-IVVAHRLSTVVN-ADQI-LVIKDGCIVERGRH 272 (306)
T ss_dssp SCCCHHHHHHHHHHHHHH---HT--TSEE-EEECCSHHHHHT-CSEE-EEEETTEEEEEECH
T ss_pred ccCCHHHHHHHHHHHHHH---cC--CCEE-EEEEcChHHHHc-CCEE-EEEECCEEEEECCH
Confidence 999998865543332111 00 0111 112499988876 9999 88999999877653
No 30
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.42 E-value=2.2e-15 Score=144.46 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=102.5
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh--h-----hh--hhccCCCC--
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--W-----LC--QLFKPKSA-- 85 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~--~-----l~--~~~~p~~~-- 85 (406)
....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++. . +. ..|.||..
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~ 108 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAY-----------EPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLE 108 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHT
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCccc
Confidence 3445789999999999999999999999999 7899999999997653 1 11 13555542
Q ss_pred -cCceeEEEeecccccccc----C--CC---CCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCC
Q 015465 86 -VPAFLEIHDIAGLVRGAH----E--GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 86 -~~~~i~lvD~~gl~~~~~----~--~~---~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~ 140 (406)
.+..+++.|...+..... . .. .....+++.+...+ -.+.+++|+ .+|+++++|
T Consensus 109 ~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLD-- 186 (279)
T 2ihy_A 109 KFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILD-- 186 (279)
T ss_dssp TSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE--
T ss_pred ccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEe--
Confidence 111234444433221000 0 00 00001111111100 114566666 799999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHh--hhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSM--KRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~--~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|....+.....+..+. +. ...+ ... +|++..+..+||++ .+|++|+++..++
T Consensus 187 -EPts~LD~~~~~~l~~~l~~l~---~~-g~tv~~iiv-tHd~~~~~~~~d~v-~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 187 -EPAAGLDFIARESLLSILDSLS---DS-YPTLAMIYV-THFIEEITANFSKI-LLLKDGQSIQQGA 246 (279)
T ss_dssp -STTTTCCHHHHHHHHHHHHHHH---HH-CTTCEEEEE-ESCGGGCCTTCCEE-EEEETTEEEEEEE
T ss_pred -CCccccCHHHHHHHHHHHHHHH---HC-CCEEEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999999998755544332221 11 1122 122 39998888899998 7889998876543
No 31
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.42 E-value=2.7e-14 Score=134.46 Aligned_cols=166 Identities=19% Similarity=0.187 Sum_probs=100.8
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----h--hhccCCCCcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~p~~~~~~~ 89 (406)
..-.+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.||......
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~ 96 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRF-----------YIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN 96 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc
Confidence 3456789999999999999999999999999 789999999999765321 1 246676632222
Q ss_pred eEEEeeccccccccCCCCCcchhhhhHHhh-------------------------hchhhhhccc-CCCceEeecCCCCC
Q 015465 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAV-------------------------DGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~~l~~~~l~~l~~a-------------------------d~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.++.|...+..... ........+..+... .-.+.+++|+ .+|+++++| ||
T Consensus 97 ~tv~enl~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLD---EP 172 (247)
T 2ff7_A 97 RSIIDNISLANPGM-SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD---EA 172 (247)
T ss_dssp SBHHHHHTTTCTTC-CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEEC---CC
T ss_pred ccHHHHHhccCCCC-CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CC
Confidence 35555544321100 000000000000000 0014456665 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|......+...+..+ .. ...+ .-.+|++..+.. ||++ .+|.+|+++..++
T Consensus 173 ts~LD~~~~~~i~~~l~~~----~~-g~tv-iivtH~~~~~~~-~d~v-~~l~~G~i~~~g~ 226 (247)
T 2ff7_A 173 TSALDYESEHVIMRNMHKI----CK-GRTV-IIIAHRLSTVKN-ADRI-IVMEKGKIVEQGK 226 (247)
T ss_dssp CSCCCHHHHHHHHHHHHHH----HT-TSEE-EEECSSGGGGTT-SSEE-EEEETTEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHH----cC-CCEE-EEEeCCHHHHHh-CCEE-EEEECCEEEEECC
Confidence 9999999865444332111 10 1111 112388877654 8988 7888898876543
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.41 E-value=1.4e-14 Score=136.08 Aligned_cols=167 Identities=16% Similarity=0.192 Sum_probs=98.3
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~ 89 (406)
..-.+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.||......
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~ 89 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERF-----------YQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA 89 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHHTTS-----------SCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc
Confidence 3456889999999999999999999999999 7899999999997653321 245666532222
Q ss_pred eEEEeeccccccccCCCCCcchhhhhHHh-------------------------hhchhhhhccc-CCCceEeecCCCCC
Q 015465 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRA-------------------------VDGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~~l~~~~l~~l~~-------------------------ad~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.++.|...+..............++.+.. -.-.+.+++++ .+|+++++| ||
T Consensus 90 ~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLD---EP 166 (243)
T 1mv5_A 90 GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLD---EA 166 (243)
T ss_dssp EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE---CC
T ss_pred ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEE---CC
Confidence 35555443321000000000000000000 00013455555 699999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|....+.+...+ .+ +.. ...+ .-.+|+...+. .||++ .+|++|+++..++
T Consensus 167 ts~LD~~~~~~i~~~l---~~-~~~-~~tv-i~vtH~~~~~~-~~d~v-~~l~~G~i~~~g~ 220 (243)
T 1mv5_A 167 TASLDSESESMVQKAL---DS-LMK-GRTT-LVIAHRLSTIV-DADKI-YFIEKGQITGSGK 220 (243)
T ss_dssp SCSSCSSSCCHHHHHH---HH-HHT-TSEE-EEECCSHHHHH-HCSEE-EEEETTEECCCSC
T ss_pred cccCCHHHHHHHHHHH---HH-hcC-CCEE-EEEeCChHHHH-hCCEE-EEEECCEEEEeCC
Confidence 9999987753332221 11 110 1111 11239888764 59988 7889998876553
No 33
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.41 E-value=3.6e-14 Score=134.09 Aligned_cols=158 Identities=17% Similarity=0.275 Sum_probs=96.2
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCC-CcCceeEEEee
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAFLEIHDI 95 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~-~~~~~i~lvD~ 95 (406)
..-.+.+|++++|+||||||||||+++|+|. ..|++|.|.+.. ...|.||. ..+..+++.|.
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~~------~i~~v~q~~~~~~~~tv~en 86 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGI-----------HRPIQGKIEVYQ------SIGFVPQFFSSPFAYSVLDI 86 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHHHHHHHHTTS-----------SCCSEEEEEECS------CEEEECSCCCCSSCCBHHHH
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEEec------cEEEEcCCCccCCCCCHHHH
Confidence 3445789999999999999999999999999 789999997321 12355554 22223445554
Q ss_pred ccccccccC------CC---CCcchhhhhHHhhhc--------------hhhhhccc-CCCceEeecCCCCCCchHHHHH
Q 015465 96 AGLVRGAHE------GQ---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (406)
Q Consensus 96 ~gl~~~~~~------~~---~l~~~~l~~l~~ad~--------------ll~vvda~-~~~~il~ld~~~dP~~~ld~i~ 151 (406)
..+...... .. .....+++.+...+. .+.+++|+ .+|+++++| ||++.+|+..
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD---EPts~LD~~~ 163 (253)
T 2nq2_C 87 VLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD---EPTSALDLAN 163 (253)
T ss_dssp HHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES---SSSTTSCHHH
T ss_pred HHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHH
Confidence 433211100 00 000011111111110 14556666 799999999 9999999998
Q ss_pred HHHhhhhHHHHHHHHHHHHH----HhhhccccchHHHHHHHHHHHHHhhCCCccccC
Q 015465 152 AELRLKDIEFMERRIEDVEK----SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (406)
Q Consensus 152 ~el~~~di~~l~k~l~~~~~----~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~ 204 (406)
.+.....+ ..+.+ .+ .-.+|+...+..+||++ .+|++|+ +..+
T Consensus 164 ~~~l~~~l-------~~l~~~~g~tv-i~vtHd~~~~~~~~d~v-~~l~~G~-~~~g 210 (253)
T 2nq2_C 164 QDIVLSLL-------IDLAQSQNMTV-VFTTHQPNQVVAIANKT-LLLNKQN-FKFG 210 (253)
T ss_dssp HHHHHHHH-------HHHHHTSCCEE-EEEESCHHHHHHHCSEE-EEEETTE-EEEE
T ss_pred HHHHHHHH-------HHHHHhcCCEE-EEEecCHHHHHHhCCEE-EEEeCCe-EecC
Confidence 64443322 11111 01 01139999999999998 7889998 6554
No 34
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.39 E-value=3.1e-13 Score=136.30 Aligned_cols=98 Identities=35% Similarity=0.597 Sum_probs=81.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEee
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~ 95 (406)
.....++.+..++|||+||||||||+|+|++....++++||+|+.|+.|.+.+++. ..+.++|+
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~----------------~~~~l~Dt 212 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE----------------ERFTLADI 212 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS----------------CEEEEEEC
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc----------------ceEEEEec
Confidence 34445677899999999999999999999999877799999999999999988752 24789999
Q ss_pred ccccccccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 96 AGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 96 ~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
||+....+....++..++..++.++.+++++|+.
T Consensus 213 pGli~~a~~~~~L~~~fl~~~era~~lL~vvDls 246 (416)
T 1udx_A 213 PGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA 246 (416)
T ss_dssp CCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT
T ss_pred cccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc
Confidence 9998776665566667777777888898888874
No 35
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.39 E-value=1.1e-13 Score=132.05 Aligned_cols=169 Identities=14% Similarity=0.144 Sum_probs=100.9
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-------hhhccCCCCcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPKSAVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~~~~~p~~~~~~~ 89 (406)
....+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++... ...|.||......
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~ 106 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNL-----------YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG 106 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc
Confidence 3456889999999999999999999999999 789999999999876431 1246676632222
Q ss_pred eEEEeeccccccccCC-CCC--------cchhhhhH--H-------hh-------hchhhhhccc-CCCceEeecCCCCC
Q 015465 90 LEIHDIAGLVRGAHEG-QGL--------GNSFLSHI--R-------AV-------DGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~-~~l--------~~~~l~~l--~-------~a-------d~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.++.|...+....... ... ...++..+ . .. .-.+.+++|+ .+|+++++| ||
T Consensus 107 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLD---EP 183 (271)
T 2ixe_A 107 RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD---NA 183 (271)
T ss_dssp SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEE---ST
T ss_pred ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEE---CC
Confidence 3555544332111000 000 00001000 0 00 0114566666 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|......+...+..+. ......+ .-.+|+...+.. ||++ .+|.+|+++..++
T Consensus 184 ts~LD~~~~~~i~~~l~~~~---~~~g~tv-iivtHd~~~~~~-~d~v-~~l~~G~i~~~g~ 239 (271)
T 2ixe_A 184 TSALDAGNQLRVQRLLYESP---EWASRTV-LLITQQLSLAER-AHHI-LFLKEGSVCEQGT 239 (271)
T ss_dssp TTTCCHHHHHHHHHHHHHCT---TTTTSEE-EEECSCHHHHTT-CSEE-EEEETTEEEEEEC
T ss_pred ccCCCHHHHHHHHHHHHHHH---hhcCCEE-EEEeCCHHHHHh-CCEE-EEEECCEEEEECC
Confidence 99999998644332211100 0000001 011388887764 8988 7888898876553
No 36
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.38 E-value=6.7e-15 Score=139.84 Aligned_cols=163 Identities=16% Similarity=0.178 Sum_probs=100.5
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----hhh-ccCCCCcCceeE
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQL-FKPKSAVPAFLE 91 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~~~-~~p~~~~~~~i~ 91 (406)
....+. |++++|+||||||||||+++|+|. . |++|.|.++|.++... ... |.||.... .++
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~~t 89 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISGL-----------L-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI-GVT 89 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTTS-----------S-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT-TSB
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhCC-----------C-CCCcEEEECCEECcchHHhhheEEEeCCCCcc-CCc
Confidence 345688 999999999999999999999999 8 9999999999765321 123 56665322 344
Q ss_pred EEeeccccccccC-CCCCcchhhhhHHhh-h--------------chhhhhccc-CCCceEeecCCCCCCchHHHHHHHH
Q 015465 92 IHDIAGLVRGAHE-GQGLGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAEL 154 (406)
Q Consensus 92 lvD~~gl~~~~~~-~~~l~~~~l~~l~~a-d--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el 154 (406)
+.|...+...... .......+++.+... + -.+.+++++ .+|+++++| ||++.+|....+.
T Consensus 90 v~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD---EPts~LD~~~~~~ 166 (263)
T 2pjz_A 90 VNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLD---EPFENVDAARRHV 166 (263)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE---CTTTTCCHHHHHH
T ss_pred HHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCccccCHHHHHH
Confidence 4444332211000 000000111111111 1 114455665 799999999 9999999988644
Q ss_pred hhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHH-HHHHHhhCCCccccCC
Q 015465 155 RLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQ-RVKAWLQDGKDVRLGD 205 (406)
Q Consensus 155 ~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~-~i~~~L~~g~~~~~~~ 205 (406)
....+ ..+.+.+ .-.+|+...+..+|+ ++ .+|++|+++..++
T Consensus 167 l~~~L-------~~~~~tv-iivtHd~~~~~~~~d~~i-~~l~~G~i~~~g~ 209 (263)
T 2pjz_A 167 ISRYI-------KEYGKEG-ILVTHELDMLNLYKEYKA-YFLVGNRLQGPIS 209 (263)
T ss_dssp HHHHH-------HHSCSEE-EEEESCGGGGGGCTTSEE-EEEETTEEEEEEE
T ss_pred HHHHH-------HHhcCcE-EEEEcCHHHHHHhcCceE-EEEECCEEEEecC
Confidence 33221 1111111 112399988889999 98 7889998876553
No 37
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.33 E-value=7.2e-13 Score=104.13 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=48.5
Q ss_pred HHcccCcEEEeecCCC----CeeeEEe-cCCCCcchhcccchhhhhhccEEEEEeccc
Q 015465 298 GFSAINLIYFFTAGPD----EVKCWQI-RRQTKAPQAAGTIHTDFERGFICAEVMKFD 350 (406)
Q Consensus 298 ~~~~L~li~~fT~g~~----e~raw~i-~~gsta~~aAg~IHsD~~kgFi~Aev~~~~ 350 (406)
.|+.|+||++||+.++ ...|.++ ++|+|+.|+|.+||+||.+.|+||.||+.+
T Consensus 5 ~~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~s 62 (93)
T 2eki_A 5 SSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLS 62 (93)
T ss_dssp SSSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTT
T ss_pred ChhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEeccc
Confidence 4789999999997654 3479999 999999999999999999999999999988
No 38
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.33 E-value=3.6e-13 Score=127.66 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=98.6
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----h--hhccCCCCcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~p~~~~~~~ 89 (406)
..-.+++|++++|+||||||||||+++|+|. ..| +|.|.++|.++... . ..|.||......
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~ 106 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRF-----------YDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN 106 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------CCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc
Confidence 3456889999999999999999999999999 556 79999999876432 1 246676632223
Q ss_pred eEEEeeccccccccCCCCCcchhhhhHHhh----------------------------hchhhhhccc-CCCceEeecCC
Q 015465 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~~l~~~~l~~l~~a----------------------------d~ll~vvda~-~~~~il~ld~~ 140 (406)
.++.|...+....... .+..+.++.+ .-.+.+++|+ .+|+++++|
T Consensus 107 ~tv~enl~~~~~~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD-- 180 (260)
T 2ghi_A 107 ETIKYNILYGKLDATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD-- 180 (260)
T ss_dssp EEHHHHHHTTCTTCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEE--
T ss_pred cCHHHHHhccCCCCCH----HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEE--
Confidence 4555554332110000 0000000000 0013455555 699999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|..........+..+ .+ ...+ .-.+|+...+. .||++ .+|++|+++..++
T Consensus 181 -EPts~LD~~~~~~i~~~l~~l----~~-~~tv-iivtH~~~~~~-~~d~i-~~l~~G~i~~~g~ 236 (260)
T 2ghi_A 181 -EATSSLDSKTEYLFQKAVEDL----RK-NRTL-IIIAHRLSTIS-SAESI-ILLNKGKIVEKGT 236 (260)
T ss_dssp -CCCCTTCHHHHHHHHHHHHHH----TT-TSEE-EEECSSGGGST-TCSEE-EEEETTEEEEEEC
T ss_pred -CccccCCHHHHHHHHHHHHHh----cC-CCEE-EEEcCCHHHHH-hCCEE-EEEECCEEEEECC
Confidence 999999999865443322111 10 1111 11238887765 48888 7788898876553
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.32 E-value=3.5e-13 Score=141.80 Aligned_cols=165 Identities=12% Similarity=0.148 Sum_probs=102.5
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+..-.+++|++++|+||||||||||+++|+|. .+|++|.|.++|.++.... ..|.||.....
T Consensus 361 ~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 429 (582)
T 3b5x_A 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRF-----------YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF 429 (582)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccc
Confidence 34455789999999999999999999999999 7899999999998764321 24667663222
Q ss_pred eeEEEeeccccccccCCCCCcchhhhhHHhh----------------------------hchhhhhccc-CCCceEeecC
Q 015465 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~a----------------------------d~ll~vvda~-~~~~il~ld~ 139 (406)
..++.|...+........ .+..+.++.+ .-.+.+++|+ .+|+++++|
T Consensus 430 ~~tv~eni~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlD- 505 (582)
T 3b5x_A 430 NDTIANNIAYAAEGEYTR---EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILD- 505 (582)
T ss_pred cccHHHHHhccCCCCCCH---HHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE-
Confidence 234444443322000000 0000000000 0114466666 799999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|...+......+..+ .+ .+.+ .-.+|+...+. .||++ ..|++|+++..|+
T Consensus 506 --Epts~LD~~~~~~i~~~l~~~----~~-~~tv-i~itH~~~~~~-~~d~i-~~l~~G~i~~~g~ 561 (582)
T 3b5x_A 506 --EATSALDTESERAIQAALDEL----QK-NKTV-LVIAHRLSTIE-QADEI-LVVDEGEIIERGR 561 (582)
T ss_pred --CccccCCHHHHHHHHHHHHHH----cC-CCEE-EEEecCHHHHH-hCCEE-EEEECCEEEEECC
Confidence 999999999865443322111 00 1111 11139888775 69998 8889999886654
No 40
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.32 E-value=2.1e-13 Score=126.92 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=92.6
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeec
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~ 96 (406)
..-.+++|++++|+||||||||||+++|+|. ..|++|.|.++|. ..|.||.......++.|..
T Consensus 27 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~------i~~v~q~~~~~~~tv~enl 89 (229)
T 2pze_A 27 INFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGR------ISFCSQFSWIMPGTIKENI 89 (229)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEECSC------EEEECSSCCCCSBCHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCccEEEECCE------EEEEecCCcccCCCHHHHh
Confidence 3456789999999999999999999999999 7899999999873 2345554211112333333
Q ss_pred cccccccC--------CCCCcchhhh---------------hH-Hhhhchhhhhccc-CCCceEeecCCCCCCchHHHHH
Q 015465 97 GLVRGAHE--------GQGLGNSFLS---------------HI-RAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (406)
Q Consensus 97 gl~~~~~~--------~~~l~~~~l~---------------~l-~~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~ 151 (406)
.+...... ..++. .++. .+ ..-.-.+.+++++ .+|+++++| ||++.+|...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLD---EPts~LD~~~ 165 (229)
T 2pze_A 90 IFGVSYDEYRYRSVIKACQLE-EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFGYLDVLT 165 (229)
T ss_dssp HTTSCCCHHHHHHHHHHTTCH-HHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEE---STTTTSCHHH
T ss_pred hccCCcChHHHHHHHHHhCcH-HHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---CcccCCCHHH
Confidence 22110000 00000 0000 00 0000113455555 699999999 9999999988
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 152 AELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 152 ~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
.+.....+ +.+ +.. ...+ .-.+|+...+. .||++ .+|++|+++..++
T Consensus 166 ~~~i~~~l--~~~-~~~-~~tv-i~vtH~~~~~~-~~d~v-~~l~~G~i~~~g~ 212 (229)
T 2pze_A 166 EKEIFESC--VCK-LMA-NKTR-ILVTSKMEHLK-KADKI-LILHEGSSYFYGT 212 (229)
T ss_dssp HHHHHHHC--CCC-CTT-TSEE-EEECCCHHHHH-HCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHH--HHH-hhC-CCEE-EEEcCChHHHH-hCCEE-EEEECCEEEEECC
Confidence 53332210 000 000 0011 11138887765 48888 7788898876543
No 41
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.31 E-value=9.1e-13 Score=121.34 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=89.5
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh--hhhccCCCC-cCceeEEEe
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--CQLFKPKSA-VPAFLEIHD 94 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--~~~~~p~~~-~~~~i~lvD 94 (406)
.-.+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++... ...|.||.. .+..+++.|
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTY-----------LKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHH
Confidence 345789999999999999999999999999 789999999999765311 124666652 233344444
Q ss_pred eccccccccC-CCC--CcchhhhhHH-------------hhhchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhh
Q 015465 95 IAGLVRGAHE-GQG--LGNSFLSHIR-------------AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLK 157 (406)
Q Consensus 95 ~~gl~~~~~~-~~~--l~~~~l~~l~-------------~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~ 157 (406)
...+...... ... ....+++.+. .-.-.+.+++++ .+|+++++| ||++.+|+...+....
T Consensus 98 nl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLD---EPts~LD~~~~~~l~~ 174 (214)
T 1sgw_A 98 YLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLD---DPVVAIDEDSKHKVLK 174 (214)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE---STTTTSCTTTHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCCcCCCHHHHHHHHH
Confidence 4332210000 000 0000111110 001114566666 799999999 9999999987644433
Q ss_pred hHHHHHHHHHHHHHHhhhccccchHHHHHHHHHH
Q 015465 158 DIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRV 191 (406)
Q Consensus 158 di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i 191 (406)
.+..+. +. ...+.. .+|+...+..+|+++
T Consensus 175 ~l~~~~---~~-g~tiii-vtHd~~~~~~~~d~v 203 (214)
T 1sgw_A 175 SILEIL---KE-KGIVII-SSREELSYCDVNENL 203 (214)
T ss_dssp HHHHHH---HH-HSEEEE-EESSCCTTSSEEEEG
T ss_pred HHHHHH---hC-CCEEEE-EeCCHHHHHHhCCEE
Confidence 322111 10 111111 137777666666665
No 42
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.31 E-value=3.7e-13 Score=126.86 Aligned_cols=170 Identities=14% Similarity=0.073 Sum_probs=96.9
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------h--hhccCCCC-cCc
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSA-VPA 88 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~p~~~-~~~ 88 (406)
.-.+.+|++++|+||||||||||+++|+|... ..|++|.|.++|.++... . ..|.+|.. .+.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAGDPE---------YTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVP 93 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCcccc
Confidence 44578999999999999999999999999710 358999999999765321 1 13556652 222
Q ss_pred eeEEEeeccccccc-cC---C----CCCcchhhhhHHh----------------hhchhhhhccc-CCCceEeecCCCCC
Q 015465 89 FLEIHDIAGLVRGA-HE---G----QGLGNSFLSHIRA----------------VDGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 89 ~i~lvD~~gl~~~~-~~---~----~~l~~~~l~~l~~----------------ad~ll~vvda~-~~~~il~ld~~~dP 143 (406)
.+++.|...+.... .. . .......++.+.. -.-.+.+++++ .+|+++++| ||
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD---EP 170 (250)
T 2d2e_A 94 GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLD---ET 170 (250)
T ss_dssp SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEE---CG
T ss_pred CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEe---CC
Confidence 33433433221100 00 0 0000000000000 00013455555 699999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHH-HHHHHHHhhCCCccccCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHEL-CQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l-~~~i~~~L~~g~~~~~~~ 205 (406)
++.+|....+.....+.. +.+-...+ .-.+|+...+..+ ||++ .+|++|+++..++
T Consensus 171 ts~LD~~~~~~l~~~l~~----l~~~g~tv-i~vtHd~~~~~~~~~d~v-~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 171 DSGLDIDALKVVARGVNA----MRGPNFGA-LVITHYQRILNYIQPDKV-HVMMDGRVVATGG 227 (250)
T ss_dssp GGTTCHHHHHHHHHHHHH----HCSTTCEE-EEECSSSGGGGTSCCSEE-EEEETTEEEEEES
T ss_pred CcCCCHHHHHHHHHHHHH----HHhcCCEE-EEEecCHHHHHHhcCCEE-EEEECCEEEEEeC
Confidence 999999886443332211 10000001 0113988887777 5888 7888898876654
No 43
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.30 E-value=2.1e-13 Score=129.76 Aligned_cols=166 Identities=16% Similarity=0.097 Sum_probs=96.3
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh------h--hhccCCCC-cCc
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSA-VPA 88 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~p~~~-~~~ 88 (406)
...+.+|++++|+||||||||||+++|+|... ..|++|.|.++|.++... . ..|.+|.. .+.
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~ 110 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGRED---------YEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIP 110 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccc
Confidence 45688999999999999999999999999820 258899999999865321 1 23556552 222
Q ss_pred eeEEEeeccccc-------cc---cCC--CCCcchhhhhHHh----------------hhchhhhhccc-CCCceEeecC
Q 015465 89 FLEIHDIAGLVR-------GA---HEG--QGLGNSFLSHIRA----------------VDGIFHVLRAF-EDPDIIHVDD 139 (406)
Q Consensus 89 ~i~lvD~~gl~~-------~~---~~~--~~l~~~~l~~l~~----------------ad~ll~vvda~-~~~~il~ld~ 139 (406)
.+++.+...+.. +. ... ......+++.+.. -.-.+.+++|+ .+|+++++|
T Consensus 111 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLD- 189 (267)
T 2zu0_C 111 GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD- 189 (267)
T ss_dssp TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEE-
T ss_pred cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEe-
Confidence 222222211100 00 000 0000000000000 00113444554 599999999
Q ss_pred CCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhc-----cccchHHHHHH-HHHHHHHhhCCCccccCCC
Q 015465 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS-----NDKQLKIEHEL-CQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 140 ~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~-----~~h~~~~v~~l-~~~i~~~L~~g~~~~~~~~ 206 (406)
||++.+|....+..... +.+....+ .+|+...+..+ ||++ .+|.+|+++..++.
T Consensus 190 --EPts~LD~~~~~~l~~~----------l~~l~~~g~tviivtHd~~~~~~~~~d~v-~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 190 --ESDSGLDIDALKVVADG----------VNSLRDGKRSFIIVTHYQRILDYIKPDYV-HVLYQGRIVKSGDF 249 (267)
T ss_dssp --STTTTCCHHHHHHHHHH----------HHTTCCSSCEEEEECSSGGGGGTSCCSEE-EEEETTEEEEEECT
T ss_pred --CCCCCCCHHHHHHHHHH----------HHHHHhcCCEEEEEeeCHHHHHhhcCCEE-EEEECCEEEEEcCH
Confidence 99999999985433222 22211111 13888877776 8888 78889988776654
No 44
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.30 E-value=7.7e-13 Score=139.58 Aligned_cols=167 Identities=14% Similarity=0.235 Sum_probs=105.3
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+..-.+++|+++||+||||||||||+++|+|. .+|++|.|.++|.++..+. ..|.||.....
T Consensus 373 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf 441 (598)
T 3qf4_B 373 DITFHIKPGQKVALVGPTGSGKTTIVNLLMRF-----------YDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF 441 (598)
T ss_dssp SEEEECCTTCEEEEECCTTSSTTHHHHHHTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCC
T ss_pred ceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------cCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccc
Confidence 33446789999999999999999999999999 7899999999998765432 24677764332
Q ss_pred eeEEEeeccccccccCCCCCc--------chhhhhH----------------Hhhhchhhhhccc-CCCceEeecCCCCC
Q 015465 89 FLEIHDIAGLVRGAHEGQGLG--------NSFLSHI----------------RAVDGIFHVLRAF-EDPDIIHVDDSVDP 143 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~--------~~~l~~l----------------~~ad~ll~vvda~-~~~~il~ld~~~dP 143 (406)
..++.|...+........... ..+...+ ..-.-.+.++||. .+|+++++| ||
T Consensus 442 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlD---Ep 518 (598)
T 3qf4_B 442 STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILD---EA 518 (598)
T ss_dssp SSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEEC---CC
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---CC
Confidence 335555443332111000000 0000000 0000114566666 799999999 99
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 144 VRDLEVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
++.+|...+..+...+ ..+.+ .+ .-.+|++..+.. ||+| .+|++|+++..|+.
T Consensus 519 ts~LD~~~~~~i~~~l-------~~~~~~~t~-i~itH~l~~~~~-~d~i-~~l~~G~i~~~g~~ 573 (598)
T 3qf4_B 519 TSNVDTKTEKSIQAAM-------WKLMEGKTS-IIIAHRLNTIKN-ADLI-IVLRDGEIVEMGKH 573 (598)
T ss_dssp CTTCCHHHHHHHHHHH-------HHHHTTSEE-EEESCCTTHHHH-CSEE-EEECSSSEEECSCH
T ss_pred ccCCCHHHHHHHHHHH-------HHHcCCCEE-EEEecCHHHHHc-CCEE-EEEECCEEEEECCH
Confidence 9999998865443322 11111 10 112399988765 9999 88999999877653
No 45
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.29 E-value=4.5e-13 Score=141.26 Aligned_cols=167 Identities=16% Similarity=0.201 Sum_probs=101.7
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~i 90 (406)
.-.+++|+++||+||||||||||+++|+|. .+|++|.|.++|.++..+. ..|.||.......
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~ 432 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRL-----------YDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC 432 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHTTS-----------SCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC
Confidence 345789999999999999999999999999 7899999999998764321 2466766322223
Q ss_pred EEEeeccccccccCCCCCcchhhhhHHhhh----------------------------chhhhhccc-CCCceEeecCCC
Q 015465 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVD----------------------------GIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 91 ~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad----------------------------~ll~vvda~-~~~~il~ld~~~ 141 (406)
++.|...+......... ..+..+.++.+. -.+.+++|+ .+|+++++|
T Consensus 433 tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlD--- 508 (595)
T 2yl4_A 433 SIAENIAYGADDPSSVT-AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLD--- 508 (595)
T ss_dssp BHHHHHHTTSSSTTTSC-HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEE---
T ss_pred CHHHHHhhcCCCccccC-HHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE---
Confidence 44454433221100000 000101111000 013455555 699999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCCCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~t 207 (406)
||++.+|...+......+..+ . + .+.+ .-.+|+...+. .||++ ..|++|+++..|+.+
T Consensus 509 Epts~LD~~~~~~i~~~l~~~---~-~-~~tv-i~itH~~~~~~-~~d~i-~~l~~G~i~~~g~~~ 566 (595)
T 2yl4_A 509 EATSALDAENEYLVQEALDRL---M-D-GRTV-LVIAHRLSTIK-NANMV-AVLDQGKITEYGKHE 566 (595)
T ss_dssp CCCSSCCHHHHHHHHHHHHHH---H-T-TSEE-EEECCCHHHHH-HSSEE-EEEETTEEEEEECSC
T ss_pred CcccCCCHHHHHHHHHHHHHH---h-c-CCEE-EEEecCHHHHH-cCCEE-EEEECCEEEEECCHH
Confidence 999999999865443322111 0 0 1111 11239988775 59998 788999988766543
No 46
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.26 E-value=4.4e-13 Score=141.02 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=100.9
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh-----h--hhccCCCCcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~p~~~~~~~ 89 (406)
..-.+++|+++||+||||||||||+++|+|. .+|++|.|.++|.++... . ..|.||......
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~ 430 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRF-----------YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 430 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTT-----------TCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc-----------cCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCC
Confidence 3445789999999999999999999999999 789999999999776432 1 246777632222
Q ss_pred eEEEeeccccccccCCCCCcchhhhhHHhh----------------------------hchhhhhccc-CCCceEeecCC
Q 015465 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~~l~~~~l~~l~~a----------------------------d~ll~vvda~-~~~~il~ld~~ 140 (406)
.++.|...+....... ..+..+.++.+ .-.+.+++|+ .+|+++++|
T Consensus 431 ~tv~eni~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlD-- 505 (582)
T 3b60_A 431 DTVANNIAYARTEEYS---REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILD-- 505 (582)
T ss_dssp SBHHHHHHTTTTSCCC---HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEE--
T ss_pred CCHHHHHhccCCCCCC---HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE--
Confidence 3555544432200000 00000000000 0013455555 699999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|...+......+ ..+.+ .+ .-.+|+...+. .||++ ..|++|+++..|+
T Consensus 506 -Epts~LD~~~~~~i~~~l-------~~~~~~~tv-i~itH~~~~~~-~~d~i-~~l~~G~i~~~g~ 561 (582)
T 3b60_A 506 -EATSALDTESERAIQAAL-------DELQKNRTS-LVIAHRLSTIE-QADEI-VVVEDGIIVERGT 561 (582)
T ss_dssp -TTTSSCCHHHHHHHHHHH-------HHHHTTSEE-EEECSCGGGTT-TCSEE-EEEETTEEEEEEC
T ss_pred -CccccCCHHHHHHHHHHH-------HHHhCCCEE-EEEeccHHHHH-hCCEE-EEEECCEEEEecC
Confidence 999999999865443322 11111 11 11138887665 58988 7889998876654
No 47
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.26 E-value=2.2e-12 Score=126.89 Aligned_cols=89 Identities=37% Similarity=0.659 Sum_probs=78.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
.|+|+|.+|||||||+|+|++....++++||+|+.|+.|.+.+++. ..+.++|+||+....+..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~----------------~~~~l~DtPG~i~~a~~~ 223 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG----------------RSFVMADLPGLIEGAHQG 223 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS----------------CEEEEEEHHHHHHHTTCT
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC----------------ceEEEecCCCCccccccc
Confidence 6899999999999999999998877899999999999999988752 248999999998877777
Q ss_pred CCCcchhhhhHHhhhchhhhhcccC
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
.+++..|++.++.+|++++|+|+..
T Consensus 224 ~~l~~~fl~~i~~~d~ll~VvD~s~ 248 (342)
T 1lnz_A 224 VGLGHQFLRHIERTRVIVHVIDMSG 248 (342)
T ss_dssp TTTHHHHHHHHHHCCEEEEEEESSC
T ss_pred chhHHHHHHHHHhccEEEEEEECCc
Confidence 7788889999999999999999853
No 48
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.26 E-value=3.9e-13 Score=135.29 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=92.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
.+||+|+||||||||+|+|+|. ..|++|.+.+++.+... ..+.++......++++|++|+......
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl-----------~~p~~GsI~~~g~~~t~--~~~v~q~~~~~~ltv~D~~g~~~~~~~- 136 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI-----------GNEEEGAAKTGVVEVTM--ERHPYKHPNIPNVVFWDLPGIGSTNFP- 136 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC-----------CTTSTTSCCCCC----C--CCEEEECSSCTTEEEEECCCGGGSSCC-
T ss_pred EEEEECCCCCcHHHHHHHHhCC-----------CCccCceEEECCeecce--eEEeccccccCCeeehHhhcccchHHH-
Confidence 9999999999999999999999 67888888877765422 134444444457899999998642111
Q ss_pred CCCcchhh---------------------hhHHhhhchhh----hhcccCCCceEeecCCCCCCchHHHHHHHHhhhhHH
Q 015465 106 QGLGNSFL---------------------SHIRAVDGIFH----VLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (406)
Q Consensus 106 ~~l~~~~l---------------------~~l~~ad~ll~----vvda~~~~~il~ld~~~dP~~~ld~i~~el~~~di~ 160 (406)
...++ +++..+.++.+ ++=+..+|+++++| ||++++|+...+..+..+.
T Consensus 137 ---~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLD---EPtsgLD~~~~~~l~~~l~ 210 (413)
T 1tq4_A 137 ---PDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITN---EADGEPQTFDKEKVLQDIR 210 (413)
T ss_dssp ---HHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHH---HHTTCCTTCCHHHHHHHHH
T ss_pred ---HHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccC---cccccCCHHHHHHHHHHHH
Confidence 11111 11222222222 11111267778888 7888888776544333322
Q ss_pred HHH-HHHHHHH----HHhhhccccchHH--HHHHHHHHHHHhhCCCccc
Q 015465 161 FME-RRIEDVE----KSMKRSNDKQLKI--EHELCQRVKAWLQDGKDVR 202 (406)
Q Consensus 161 ~l~-k~l~~~~----~~~~~~~~h~~~~--v~~l~~~i~~~L~~g~~~~ 202 (406)
.+. +.+.+.. ..+..+ +|.+.+ ++.+|+++...|++|+..+
T Consensus 211 ~l~~~~l~~~g~~~~~iiliS-sh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 211 LNCVNTFRENGIAEPPIFLLS-NKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp HHHHHHHHHTTCSSCCEEECC-TTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEe-cCcCCccCHHHHHHHHHHhCccchhhH
Confidence 221 0011100 001112 377776 9999999999999998655
No 49
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.26 E-value=1.2e-12 Score=127.02 Aligned_cols=183 Identities=21% Similarity=0.216 Sum_probs=115.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcC-CcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~-g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
...|+|+|++|||||||+|.|+|....+ ++.|++|.....|..... +. ++.++||||+...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~-----------------~i~lvDTPG~~~~ 72 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEA-----------------QIIFLDTPGIYEP 72 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTE-----------------EEEEEECCCCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCC-----------------eEEEEECcCCCcc
Confidence 3589999999999999999999998764 899999999988888776 43 4899999999764
Q ss_pred ccC---CCCCcchhhhhHHhhhchhhhhcccCCC-----------------ceEeecCCCCCCchHHHH-HHHHhhhhHH
Q 015465 102 AHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDP-----------------DIIHVDDSVDPVRDLEVI-SAELRLKDIE 160 (406)
Q Consensus 102 ~~~---~~~l~~~~l~~l~~ad~ll~vvda~~~~-----------------~il~ld~~~dP~~~ld~i-~~el~~~di~ 160 (406)
... +..+.......++.+|++++|+|+.... .++++-+ ..|.. +.+.
T Consensus 73 ~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~N------K~Dl~~~~~~------ 140 (308)
T 3iev_A 73 KKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVIN------KIDKIGPAKN------ 140 (308)
T ss_dssp CTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEE------CGGGSSSGGG------
T ss_pred ccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEE------CccCCCCHHH------
Confidence 311 1112233445678899999999986321 1111111 12222 1111
Q ss_pred HHHHHHHHHHHHhh------hccccchHHHHHHHHHHHHHhhCCCcccc-CCCChhH-----HHHHHHh-hhhccccEEe
Q 015465 161 FMERRIEDVEKSMK------RSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVY 227 (406)
Q Consensus 161 ~l~k~l~~~~~~~~------~~~~h~~~~v~~l~~~i~~~L~~g~~~~~-~~~t~~e-----~e~i~~~-~~~~~kpi~~ 227 (406)
+....+.+..... ..++....++.++.+.+...++++...+. ..+++.. .+++|+. ......+++|
T Consensus 141 -~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~ 219 (308)
T 3iev_A 141 -VLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPT 219 (308)
T ss_dssp -GHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHH
T ss_pred -HHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCC
Confidence 1111112221110 01126677889999999899988877655 3444433 2556654 4556777888
Q ss_pred eeccchhhh
Q 015465 228 LVNMNEKDY 236 (406)
Q Consensus 228 ~~N~~~~~~ 236 (406)
.+.+..+.+
T Consensus 220 ~~~v~i~~~ 228 (308)
T 3iev_A 220 SIAVKINEI 228 (308)
T ss_dssp HCEEEEEEE
T ss_pred eeEEEeEEE
Confidence 776654444
No 50
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.25 E-value=2.2e-12 Score=135.81 Aligned_cols=161 Identities=18% Similarity=0.262 Sum_probs=104.8
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~i 90 (406)
.-.+++|++++|+||||||||||+++|+|. .+|++|.|.++|.++..+. ..|.||.......
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~-----------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 431 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRL-----------IDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG 431 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTS-----------SCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc
Confidence 345789999999999999999999999999 7899999999998875432 2577777433334
Q ss_pred EEEeeccccccccCCCCCcchhhhhHHhh----------------------------hchhhhhccc-CCCceEeecCCC
Q 015465 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 91 ~lvD~~gl~~~~~~~~~l~~~~l~~l~~a----------------------------d~ll~vvda~-~~~~il~ld~~~ 141 (406)
++.|...+....... .+..+.++.+ .-.+.++||. .+|+++++|
T Consensus 432 tv~eni~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlD--- 504 (587)
T 3qf4_A 432 TIKENLKWGREDATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD--- 504 (587)
T ss_dssp EHHHHHTTTCSSCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEE---
T ss_pred cHHHHHhccCCCCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEE---
Confidence 555655443211100 0000000000 0014455665 799999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
||++.+|...+..+...+ ..+.+ .+ .-.+|++..+. .||++ .+|++|+++..|+.
T Consensus 505 Epts~LD~~~~~~i~~~l-------~~~~~~~tv-i~itH~l~~~~-~~d~i-~vl~~G~i~~~g~~ 561 (587)
T 3qf4_A 505 DCTSSVDPITEKRILDGL-------KRYTKGCTT-FIITQKIPTAL-LADKI-LVLHEGKVAGFGTH 561 (587)
T ss_dssp SCCTTSCHHHHHHHHHHH-------HHHSTTCEE-EEEESCHHHHT-TSSEE-EEEETTEEEEEECH
T ss_pred CCcccCCHHHHHHHHHHH-------HHhCCCCEE-EEEecChHHHH-hCCEE-EEEECCEEEEECCH
Confidence 999999998864443322 11110 00 01139988765 79999 88999999877653
No 51
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.25 E-value=9.8e-13 Score=138.24 Aligned_cols=160 Identities=14% Similarity=0.218 Sum_probs=101.6
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~i 90 (406)
.-.+++|+.+||+||||||||||+++|+|. .+|++|.|.++|.++..+. ..|.||......-
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 429 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRF-----------YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD 429 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc
Confidence 345789999999999999999999999999 7899999999998765432 2467776332223
Q ss_pred EEEeeccccccccCCCCCcchhhhhHHhh----------------------------hchhhhhccc-CCCceEeecCCC
Q 015465 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVDDSV 141 (406)
Q Consensus 91 ~lvD~~gl~~~~~~~~~l~~~~l~~l~~a----------------------------d~ll~vvda~-~~~~il~ld~~~ 141 (406)
++.|...+....... .+..+.++.+ .-.+.++||. .+|+++++|
T Consensus 430 tv~eni~~~~~~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlD--- 502 (578)
T 4a82_A 430 TVKENILLGRPTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILD--- 502 (578)
T ss_dssp BHHHHHGGGCSSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEE---
T ss_pred cHHHHHhcCCCCCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEE---
Confidence 555544333211100 0000000000 0013455555 699999999
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 142 DPVRDLEVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 142 dP~~~ld~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
||++.+|...+......+ ..+.+ .+ .-.+|++..+.. ||++ .+|++|+++..|+
T Consensus 503 Epts~LD~~~~~~i~~~l-------~~~~~~~t~-i~itH~l~~~~~-~d~i-~~l~~G~i~~~g~ 558 (578)
T 4a82_A 503 EATSALDLESESIIQEAL-------DVLSKDRTT-LIVAHRLSTITH-ADKI-VVIENGHIVETGT 558 (578)
T ss_dssp STTTTCCHHHHHHHHHHH-------HHHTTTSEE-EEECSSGGGTTT-CSEE-EEEETTEEEEEEC
T ss_pred CccccCCHHHHHHHHHHH-------HHHcCCCEE-EEEecCHHHHHc-CCEE-EEEECCEEEEECC
Confidence 999999998764433222 11111 00 011388887754 9998 8889999887765
No 52
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.24 E-value=8e-12 Score=116.75 Aligned_cols=162 Identities=16% Similarity=0.170 Sum_probs=93.5
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeec
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~ 96 (406)
..-.+.+|++++|+||||||||||+++|+|. ..|++|.|.++|. ..|.||.......++.|..
T Consensus 24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~------i~~v~Q~~~~~~~tv~enl 86 (237)
T 2cbz_A 24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAE-----------MDKVEGHVAIKGS------VAYVPQQAWIQNDSLRENI 86 (237)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTC-----------SEEEEEEEEECSC------EEEECSSCCCCSEEHHHHH
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCE------EEEEcCCCcCCCcCHHHHh
Confidence 4456889999999999999999999999999 7899999999873 2455555333344554544
Q ss_pred cccccccCCCCCcchhhhh------HHh-------------------hhchhhhhccc-CCCceEeecCCCCCCchHHHH
Q 015465 97 GLVRGAHEGQGLGNSFLSH------IRA-------------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (406)
Q Consensus 97 gl~~~~~~~~~l~~~~l~~------l~~-------------------ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i 150 (406)
.+....... ......+. +.. -.-.+.+++|+ .+|+++++| ||++.+|..
T Consensus 87 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD---EPts~LD~~ 161 (237)
T 2cbz_A 87 LFGCQLEEP--YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD---DPLSAVDAH 161 (237)
T ss_dssp HTTSCCCTT--HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE---STTTTSCHH
T ss_pred hCccccCHH--HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CcccccCHH
Confidence 332111000 00000000 000 00013445555 699999999 999999998
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
........+... +.+.. ...+ .-.+|+...+. .||++ .+|.+|+++..++
T Consensus 162 ~~~~i~~~l~~~-~~~~~-~~tv-iivtH~~~~~~-~~d~v-~~l~~G~i~~~g~ 211 (237)
T 2cbz_A 162 VGKHIFENVIGP-KGMLK-NKTR-ILVTHSMSYLP-QVDVI-IVMSGGKISEMGS 211 (237)
T ss_dssp HHHHHHHHTTST-TSTTT-TSEE-EEECSCSTTGG-GSSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHH-HhhcC-CCEE-EEEecChHHHH-hCCEE-EEEeCCEEEEeCC
Confidence 753332211000 00000 0001 01138776654 58887 6778888765543
No 53
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.23 E-value=1.2e-12 Score=130.88 Aligned_cols=165 Identities=12% Similarity=0.187 Sum_probs=98.4
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
...-.+.+|+.++|+||||||||||+++|+|+ .. ++|.|.++|.++..+. ..|.+|.....
T Consensus 39 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf 106 (390)
T 3gd7_A 39 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-----------LN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIF 106 (390)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTC-----------SE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCC
T ss_pred ceeEEEcCCCEEEEECCCCChHHHHHHHHhCC-----------CC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccC
Confidence 33446889999999999999999999999998 45 7899999998764321 24667764333
Q ss_pred eeEEEeeccccccccCCCCCcchhhhhHHh-------------------------hhchhhhhccc-CCCceEeecCCCC
Q 015465 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRA-------------------------VDGIFHVLRAF-EDPDIIHVDDSVD 142 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~-------------------------ad~ll~vvda~-~~~~il~ld~~~d 142 (406)
..++.|...+....... .....++.+.. -.-.+.+++|+ .+|+++++| |
T Consensus 107 ~~tv~enl~~~~~~~~~--~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLD---E 181 (390)
T 3gd7_A 107 SGTFRKNLDPNAAHSDQ--EIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD---E 181 (390)
T ss_dssp SEEHHHHHCTTCCSCHH--HHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEE---S
T ss_pred ccCHHHHhhhccccCHH--HHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 34555544322111000 00000000000 00113455555 699999999 9
Q ss_pred CCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
|++.+|....+.....+. + +.. ...+ .-.+|+.+.+ ..||+| .+|++|+++..|+
T Consensus 182 Pts~LD~~~~~~l~~~l~---~-~~~-~~tv-i~vtHd~e~~-~~aDri-~vl~~G~i~~~g~ 236 (390)
T 3gd7_A 182 PSAHLDPVTYQIIRRTLK---Q-AFA-DCTV-ILCEARIEAM-LECDQF-LVIEENKVRQYDS 236 (390)
T ss_dssp HHHHSCHHHHHHHHHHHH---T-TTT-TSCE-EEECSSSGGG-TTCSEE-EEEETTEEEEESS
T ss_pred CccCCCHHHHHHHHHHHH---H-HhC-CCEE-EEEEcCHHHH-HhCCEE-EEEECCEEEEECC
Confidence 999999987543332211 1 000 0000 1113877544 459999 8899999887664
No 54
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.22 E-value=1.5e-12 Score=125.33 Aligned_cols=159 Identities=15% Similarity=0.185 Sum_probs=92.1
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecc
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~g 97 (406)
.-.+.+|++++|+||||||||||+++|+|. ..|++|.|.++|. ..|.||.......++.|...
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~------i~~v~Q~~~l~~~tv~enl~ 120 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGR------ISFCSQNSWIMPGTIKENII 120 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTS-----------SCEEEEEEECCSC------EEEECSSCCCCSSBHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCE------EEEEeCCCccCcccHHHHhh
Confidence 345789999999999999999999999999 7899999999873 23555542111123333321
Q ss_pred ccccccC--------CCCCcchhhhh---------------H-Hhhhchhhhhccc-CCCceEeecCCCCCCchHHHHHH
Q 015465 98 LVRGAHE--------GQGLGNSFLSH---------------I-RAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (406)
Q Consensus 98 l~~~~~~--------~~~l~~~~l~~---------------l-~~ad~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~ 152 (406)
...... ..++. .++.. + ..-.-.+.+++++ .+|+++++| ||++.+|....
T Consensus 121 -~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLD---EPts~LD~~~~ 195 (290)
T 2bbs_A 121 -GVSYDEYRYRSVIKACQLE-EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFGYLDVLTE 195 (290)
T ss_dssp -TTCCCHHHHHHHHHHTTCH-HHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEE---STTTTCCHHHH
T ss_pred -CcccchHHHHHHHHHhChH-HHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEE---CCcccCCHHHH
Confidence 000000 00000 00000 0 0000113455665 799999999 99999999885
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
......+ .+.+.. ...+ .-.+|+...+. .|+++ .+|.+|+++..++
T Consensus 196 ~~i~~~l---l~~~~~-~~tv-iivtHd~~~~~-~~d~i-~~l~~G~i~~~g~ 241 (290)
T 2bbs_A 196 KEIFESC---VCKLMA-NKTR-ILVTSKMEHLK-KADKI-LILHEGSSYFYGT 241 (290)
T ss_dssp HHHHHHC---CCCCTT-TSEE-EEECCCHHHHH-HSSEE-EEEETTEEEEEEC
T ss_pred HHHHHHH---HHHhhC-CCEE-EEEecCHHHHH-cCCEE-EEEECCeEEEeCC
Confidence 3332210 000000 0111 11239887764 59988 7888998876654
No 55
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.19 E-value=3e-11 Score=114.11 Aligned_cols=60 Identities=32% Similarity=0.511 Sum_probs=53.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
+|+++|.+|||||||||.|+|....++++|++|.+...|.+.+.+. .+.++|+||.....
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~-----------------~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH-----------------LIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE-----------------EEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe-----------------EEEEEeCCCccccc
Confidence 7899999999999999999999877799999999999999988764 38999999986543
No 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.19 E-value=6.9e-12 Score=130.50 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=87.2
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcC-ceeEEEeecccc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVP-AFLEIHDIAGLV 99 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~-~~i~lvD~~gl~ 99 (406)
+.+|+++||+||||||||||+++|+|. ..|++|.|.+.+..+. |.||.... ...++.+.....
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~~~i~-----~~~q~~~~~~~~tv~~~l~~~ 354 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGE-----------ITADEGSVTPEKQILS-----YKPQRIFPNYDGTVQQYLENA 354 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSBCCEESSCCCEE-----EECSSCCCCCSSBHHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCeeeE-----eechhcccccCCCHHHHHHHh
Confidence 578999999999999999999999999 7899999988776543 33332111 111222211111
Q ss_pred cccc--CCCCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHH
Q 015465 100 RGAH--EGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFM 162 (406)
Q Consensus 100 ~~~~--~~~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l 162 (406)
.... ........+++.+...+ --+.++++. .+|+++++| ||++.+|+.....+...+..+
T Consensus 355 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLD---EPT~gLD~~~~~~i~~~l~~l 431 (538)
T 3ozx_A 355 SKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLD---QPSSYLDVEERYIVAKAIKRV 431 (538)
T ss_dssp CSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE---STTTTCCHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCCHHHHHHHHHHHHHH
Confidence 0000 00000000011110000 013455555 699999999 999999999864443322111
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCC
Q 015465 163 ERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (406)
Q Consensus 163 ~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g 198 (406)
. ......+ .-.+|++..+..+||+| .+|..+
T Consensus 432 ~---~~~g~tv-i~vsHdl~~~~~~aDri-~vl~~~ 462 (538)
T 3ozx_A 432 T---RERKAVT-FIIDHDLSIHDYIADRI-IVFKGE 462 (538)
T ss_dssp H---HHTTCEE-EEECSCHHHHHHHCSEE-EEEEEE
T ss_pred H---HhCCCEE-EEEeCCHHHHHHhCCEE-EEEeCC
Confidence 1 0000011 11239999999999999 677653
No 57
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.17 E-value=9.7e-11 Score=111.55 Aligned_cols=62 Identities=34% Similarity=0.505 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
..+|+++|.+|||||||+|+|+|....++++|++|.++..+.+.+.+. .+.++|+||.....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~-----------------~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH-----------------QVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC-----------------EEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC-----------------ceEEEECcCCCccc
Confidence 368999999999999999999999877789999999999999888764 37899999987543
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.13 E-value=6e-12 Score=130.96 Aligned_cols=43 Identities=26% Similarity=0.257 Sum_probs=36.7
Q ss_pred CcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEE
Q 015465 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV 66 (406)
Q Consensus 13 ~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i 66 (406)
++.-.+-.+.+|+++||+||||||||||+++|+|. ..|+.|.+
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl-----------~~p~~G~i 56 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGE-----------IIPNFGDP 56 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTS-----------SCCCTTCT
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCCcc
Confidence 44455666789999999999999999999999999 67888876
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.11 E-value=7.4e-12 Score=131.92 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=32.7
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEE
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV 66 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i 66 (406)
.+.+|+++||+||||||||||+++|+|. ..|++|.+
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gl-----------l~P~~G~i 134 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGK-----------QKPNLGRF 134 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTS-----------SCCCTTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcC-----------CCCCCceE
Confidence 5778999999999999999999999999 67777876
No 60
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.10 E-value=6e-12 Score=131.07 Aligned_cols=161 Identities=19% Similarity=0.219 Sum_probs=87.7
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCC-cCceeEEEeecccc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIAGLV 99 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~-~~~~i~lvD~~gl~ 99 (406)
+.+|+++||+||||||||||+++|+|. ..|++|.|.+. .. ..|.||.. .....++.+.....
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~i~~~-~~-----i~~v~Q~~~~~~~~tv~~~~~~~ 371 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGV-----------EEPTEGKIEWD-LT-----VAYKPQYIKADYEGTVYELLSKI 371 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSBCCCCCC-CC-----EEEECSSCCCCCSSBHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEEC-ce-----EEEEecCCcCCCCCcHHHHHHhh
Confidence 468999999999999999999999999 67788877652 11 23444432 11122222221111
Q ss_pred -ccccCCCCCcchhhhhHHhh--------------hchhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHH
Q 015465 100 -RGAHEGQGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFME 163 (406)
Q Consensus 100 -~~~~~~~~l~~~~l~~l~~a--------------d~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~ 163 (406)
............+++.+... .--+.+++++ .+|+++++| ||++++|+...+.+...+..+.
T Consensus 372 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD---EPt~~LD~~~~~~i~~~l~~l~ 448 (538)
T 1yqt_A 372 DASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD---EPSAYLDVEQRLAVSRAIRHLM 448 (538)
T ss_dssp HHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE---CTTTTCCHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCcccCCHHHHHHHHHHHHHHH
Confidence 00000000000000000000 0013455555 699999999 9999999998654433322111
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHhhC--CCccccCCC
Q 015465 164 RRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD--GKDVRLGDW 206 (406)
Q Consensus 164 k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~--g~~~~~~~~ 206 (406)
......+ .-.+|+...+..+||++ .+|.. |.....+..
T Consensus 449 ---~~~g~tv-i~vsHd~~~~~~~~drv-~vl~~~~~~~~~~g~~ 488 (538)
T 1yqt_A 449 ---EKNEKTA-LVVEHDVLMIDYVSDRL-MVFEGEPGKYGRALPP 488 (538)
T ss_dssp ---HHHTCEE-EEECSCHHHHHHHCSEE-EEEEEETTTEEEECCC
T ss_pred ---HhCCCEE-EEEeCCHHHHHHhCCEE-EEEeCCcceEeecCCH
Confidence 0001111 11139999999999998 66764 444444443
No 61
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.10 E-value=5.2e-12 Score=133.17 Aligned_cols=160 Identities=19% Similarity=0.255 Sum_probs=87.9
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCC-cCceeEEEeecccc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIAGLV 99 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~-~~~~i~lvD~~gl~ 99 (406)
+.+|+++||+||||||||||+++|+|. ..|++|.|.+. . ...|.||.. ....+++.+.....
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~-~-----~i~~v~Q~~~~~~~~tv~e~~~~~ 441 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGV-----------EEPTEGKVEWD-L-----TVAYKPQYIKAEYEGTVYELLSKI 441 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSBSCCCCC-C-----CEEEECSSCCCCCSSBHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEEe-e-----EEEEEecCccCCCCCcHHHHHHhh
Confidence 468999999999999999999999999 67888887652 1 123445442 11222322222111
Q ss_pred -ccccCCCCCcchhhhhHHhhh--------------chhhhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHH
Q 015465 100 -RGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFME 163 (406)
Q Consensus 100 -~~~~~~~~l~~~~l~~l~~ad--------------~ll~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~ 163 (406)
............+++.+...+ --+.+++++ .+|+++++| ||++.+|+...+.....+..+.
T Consensus 442 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD---EPt~~LD~~~~~~l~~~l~~l~ 518 (607)
T 3bk7_A 442 DSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD---EPSAYLDVEQRLAVSRAIRHLM 518 (607)
T ss_dssp HHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE---CTTTTCCHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCccCCCHHHHHHHHHHHHHHH
Confidence 000000000001111111000 013455555 699999999 9999999998644433221110
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHhhC--CCccccCC
Q 015465 164 RRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD--GKDVRLGD 205 (406)
Q Consensus 164 k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~--g~~~~~~~ 205 (406)
......+ .-.+|++..+..+||++ .+|.. |.....++
T Consensus 519 ---~~~g~tv-i~vsHd~~~~~~~adrv-~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 519 ---EKNEKTA-LVVEHDVLMIDYVSDRL-IVFEGEPGRHGRALP 557 (607)
T ss_dssp ---HHTTCEE-EEECSCHHHHHHHCSEE-EEEEEETTTEEEECC
T ss_pred ---HhCCCEE-EEEeCCHHHHHHhCCEE-EEEcCCcceEEecCC
Confidence 0000011 11139999999999998 66764 44333444
No 62
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.10 E-value=7.5e-12 Score=142.74 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=104.3
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhh-------hccCCCCcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~p~~~~~~~ 89 (406)
..-.+++|+++||||++|||||||+++|.|. .+|++|.|.++|.++..+.. .+.||...-..
T Consensus 1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl-----------~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~ 1166 (1321)
T 4f4c_A 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERF-----------YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166 (1321)
T ss_dssp EEEEECTTCEEEEECSTTSSTTSHHHHHTTS-----------SCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS
T ss_pred eeEEECCCCEEEEECCCCChHHHHHHHHhcC-----------ccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC
Confidence 3446889999999999999999999999999 78999999999988755431 47788765555
Q ss_pred eEEEeeccccccccCCCCCcchhhhhHHhhh----------------------------chhhhhccc-CCCceEeecCC
Q 015465 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD----------------------------GIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad----------------------------~ll~vvda~-~~~~il~ld~~ 140 (406)
-++.|+..+...+..- -..+..+.++.+. -.+.++||+ .+|++++||
T Consensus 1167 gTIreNI~~gld~~~~--sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLD-- 1242 (1321)
T 4f4c_A 1167 CSIAENIIYGLDPSSV--TMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLD-- 1242 (1321)
T ss_dssp EEHHHHHSSSSCTTTS--CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEE--
T ss_pred ccHHHHHhccCCCCCC--CHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEe--
Confidence 5666654333111100 0001111111110 024456666 799999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc-----ccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~-----~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
||++.+|..++..+..- + .+.. .+. +|.+.-+ .-||+| .+|++|+++..|+.
T Consensus 1243 -EaTSaLD~~tE~~Iq~~-------l---~~~~-~~~TvI~IAHRLsTi-~~aD~I-~Vld~G~IvE~Gth 1299 (1321)
T 4f4c_A 1243 -EATSALDTESEKVVQEA-------L---DRAR-EGRTCIVIAHRLNTV-MNADCI-AVVSNGTIIEKGTH 1299 (1321)
T ss_dssp -SCCCSTTSHHHHHHHHH-------H---TTTS-SSSEEEEECSSSSTT-TTCSEE-EEESSSSEEEEECH
T ss_pred -CccccCCHHHHHHHHHH-------H---HHHc-CCCEEEEeccCHHHH-HhCCEE-EEEECCEEEEECCH
Confidence 99999999886443222 1 1111 111 3766544 347888 88999999877653
No 63
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.09 E-value=1.7e-11 Score=118.44 Aligned_cols=179 Identities=20% Similarity=0.142 Sum_probs=104.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccc-cc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV-RG 101 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~-~~ 101 (406)
+.+++|+|+||||||||+|+|+|....+ ++.|++|.....|.+...+ .++.++||||+. ..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~-----------------~~i~~iDTpG~~~~~ 70 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-----------------YQAIYVDTPGLHMEE 70 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT-----------------EEEEEESSSSCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC-----------------eeEEEEECcCCCccc
Confidence 3489999999999999999999997643 7889999888888776553 248899999986 22
Q ss_pred ccC-CCCCcchhhhhHHhhhchhhhhccc----------------CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHH
Q 015465 102 AHE-GQGLGNSFLSHIRAVDGIFHVLRAF----------------EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 164 (406)
Q Consensus 102 ~~~-~~~l~~~~l~~l~~ad~ll~vvda~----------------~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k 164 (406)
... +..+.......++.+|++++|+|+. ..|.++++ +..|...+-+. +.+
T Consensus 71 ~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvl-NK~D~~~~~~~------------~~~ 137 (301)
T 1ega_A 71 KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAV-NKVDNVQEKAD------------LLP 137 (301)
T ss_dssp HHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEE-ESTTTCCCHHH------------HHH
T ss_pred hhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEE-ECcccCccHHH------------HHH
Confidence 110 0011112234456677777766652 22333333 24444321111 111
Q ss_pred HHHHHHH------HhhhccccchHHHHHHHHHHHHHhhCCCcccc-CCCChhH-----HHHHHHh-hhhccccEEeeecc
Q 015465 165 RIEDVEK------SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNM 231 (406)
Q Consensus 165 ~l~~~~~------~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~-~~~t~~e-----~e~i~~~-~~~~~kpi~~~~N~ 231 (406)
.+..+.+ .+..+ +|...++..+++.+...++.+...+. +.+++.. .+.+|+. ......+++|.+.+
T Consensus 138 ~l~~l~~~~~~~~~i~iS-A~~g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v 216 (301)
T 1ega_A 138 HLQFLASQMNFLDIVPIS-AETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTV 216 (301)
T ss_dssp HHHHHHTTSCCSEEEECC-TTTTTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEE
T ss_pred HHHHHHHhcCcCceEEEE-CCCCCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 1122211 11112 37788899999999888888776554 3444332 2344444 33455666655544
Q ss_pred ch
Q 015465 232 NE 233 (406)
Q Consensus 232 ~~ 233 (406)
..
T Consensus 217 ~i 218 (301)
T 1ega_A 217 EI 218 (301)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 64
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.08 E-value=2.5e-11 Score=126.38 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=26.9
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+.+|+++||+|+||||||||+++|+|.
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999999998
No 65
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.07 E-value=2.5e-11 Score=138.14 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=100.4
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCcee
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAFL 90 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~i 90 (406)
.-.+++|+++||+|+||||||||+++|+|. .+|++|.|.++|.++..+. ..|.||......-
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~-----------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 478 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRL-----------YDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT 478 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc
Confidence 345789999999999999999999999999 7899999999998764432 2466766432222
Q ss_pred EEEeeccccccccCCC-------------------------------CCcchhhhhHHhhhchhhhhccc-CCCceEeec
Q 015465 91 EIHDIAGLVRGAHEGQ-------------------------------GLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVD 138 (406)
Q Consensus 91 ~lvD~~gl~~~~~~~~-------------------------------~l~~~~l~~l~~ad~ll~vvda~-~~~~il~ld 138 (406)
++.|...+........ .+..--.++ +.++||. .+|+++++|
T Consensus 479 ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qr-------iaiARal~~~p~iliLD 551 (1284)
T 3g5u_A 479 TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQR-------IAIARALVRNPKILLLD 551 (1284)
T ss_dssp CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHH-------HHHHHHHHHCCSEEEEE
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHH-------HHHHHHHhcCCCEEEEE
Confidence 4444333221110000 000000122 3445554 599999999
Q ss_pred CCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 139 ~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
||++.+|...+..+... +....+ .+ .-.+|.+..+.. ||+| .+|++|+++..|+.
T Consensus 552 ---Epts~LD~~~~~~i~~~-------l~~~~~~~t~-i~itH~l~~i~~-~d~i-~vl~~G~i~~~g~~ 608 (1284)
T 3g5u_A 552 ---EATSALDTESEAVVQAA-------LDKAREGRTT-IVIAHRLSTVRN-ADVI-AGFDGGVIVEQGNH 608 (1284)
T ss_dssp ---STTCSSCHHHHHHHHHH-------HHHHHTTSEE-EEECSCHHHHTT-CSEE-EECSSSCCCCEECH
T ss_pred ---CCCCCCCHHHHHHHHHH-------HHHHcCCCEE-EEEecCHHHHHc-CCEE-EEEECCEEEEECCH
Confidence 99999998875443322 211111 00 111399988766 8998 88899998876643
No 66
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.05 E-value=2.6e-11 Score=127.81 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=31.9
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEE
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV 66 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i 66 (406)
.+.+|+++||+||||||||||+++|+|. ..|++|.+
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl-----------l~p~~G~~ 148 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQ-----------LIPNLCED 148 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTS-----------SCCCTTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCC-----------CCCCCCcc
Confidence 5789999999999999999999999999 56676764
No 67
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.05 E-value=1.5e-10 Score=101.96 Aligned_cols=90 Identities=24% Similarity=0.310 Sum_probs=66.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
++.+++|+|+||||||||+|.|++.... ++++|++|.....+.+.+++. .+.++|+||+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM-----------------PLHIIDTAGLREA 65 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE-----------------EEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe-----------------EEEEEECCCcccc
Confidence 5789999999999999999999998653 578899999988899988764 3789999998643
Q ss_pred ccCCCCC-cchhhhhHHhhhchhhhhccc
Q 015465 102 AHEGQGL-GNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 102 ~~~~~~l-~~~~l~~l~~ad~ll~vvda~ 129 (406)
....... .......++.+|++++|+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~ad~~i~v~D~~ 94 (172)
T 2gj8_A 66 SDEVERIGIERAWQEIEQADRVLFMVDGT 94 (172)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEETT
T ss_pred hhHHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 2110000 011234567888888888774
No 68
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.05 E-value=7.7e-11 Score=116.89 Aligned_cols=89 Identities=29% Similarity=0.508 Sum_probs=57.7
Q ss_pred CCCcE-EEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 22 SSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 22 ~~g~~-igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
..|.. ++|+|+||||||||+|+|+|....++++||+|+++..+.+.++|.+ +.++||+|+..
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~-----------------v~l~DT~G~i~ 238 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK-----------------IMLVDTVGFIR 238 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE-----------------EEEEECCCBCS
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE-----------------EEEEeCCCchh
Confidence 34555 9999999999999999999998777899999999999999998753 78999999865
Q ss_pred cccCCCCCcc---hhhhhHHhhhchhhhhccc
Q 015465 101 GAHEGQGLGN---SFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 101 ~~~~~~~l~~---~~l~~l~~ad~ll~vvda~ 129 (406)
.... .+.. ..+..+..+|++++|+|++
T Consensus 239 ~lp~--~lve~f~~tl~~~~~aD~il~VvD~s 268 (364)
T 2qtf_A 239 GIPP--QIVDAFFVTLSEAKYSDALILVIDST 268 (364)
T ss_dssp SCCG--GGHHHHHHHHHGGGGSSEEEEEEETT
T ss_pred cCCH--HHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 3221 1112 2234567788888887763
No 69
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.05 E-value=1.5e-11 Score=139.89 Aligned_cols=157 Identities=15% Similarity=0.217 Sum_probs=100.7
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCc
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~ 88 (406)
+..-.+++|+++||+|+||||||||+++|+|. .+|++|.|.++|.++..+. ..|.||.....
T Consensus 1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 1119 (1284)
T 3g5u_A 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERF-----------YDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF 1119 (1284)
T ss_dssp SCCEEECSSSEEEEECSSSTTHHHHHHHHTTS-----------SCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccc
Confidence 34456789999999999999999999999999 7899999999998764322 24666664333
Q ss_pred eeEEEeeccccccccC-C----------------------------------CCCcchhhhhHHhhhchhhhhccc-CCC
Q 015465 89 FLEIHDIAGLVRGAHE-G----------------------------------QGLGNSFLSHIRAVDGIFHVLRAF-EDP 132 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~-~----------------------------------~~l~~~~l~~l~~ad~ll~vvda~-~~~ 132 (406)
..++.|...+...... . .+.|++ ++ +.++|+. .+|
T Consensus 1120 ~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~--Qr-------v~iARal~~~p 1190 (1284)
T 3g5u_A 1120 DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQK--QR-------IAIARALVRQP 1190 (1284)
T ss_dssp SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHH--HH-------HHHHHHHHHCC
T ss_pred cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHH--HH-------HHHHHHHHcCC
Confidence 3344443332211000 0 000111 22 3344554 599
Q ss_pred ceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHhhCCCccccCC
Q 015465 133 DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (406)
Q Consensus 133 ~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~~~~~ 205 (406)
+++++| ||++.+|...++.+...+ ....+ .+ .-.+|++..+.. ||+| .+|++|+++..|+
T Consensus 1191 ~iLiLD---EpTs~lD~~~~~~i~~~l-------~~~~~~~tv-i~isH~l~~i~~-~dri-~vl~~G~i~~~g~ 1252 (1284)
T 3g5u_A 1191 HILLLD---EATSALDTESEKVVQEAL-------DKAREGRTC-IVIAHRLSTIQN-ADLI-VVIQNGKVKEHGT 1252 (1284)
T ss_dssp SSEEEE---SCSSSCCHHHHHHHHHHH-------HHHSSSSCE-EEECSCTTGGGS-CSEE-EEEETBEEEEEEC
T ss_pred CEEEEe---CCcccCCHHHHHHHHHHH-------HHhCCCCEE-EEEecCHHHHHc-CCEE-EEEECCEEEEECC
Confidence 999999 999999998864443322 11110 00 011398887754 9999 8889999887664
No 70
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.04 E-value=3.4e-11 Score=126.91 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=47.1
Q ss_pred hhhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhC--CCc
Q 015465 124 HVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD--GKD 200 (406)
Q Consensus 124 ~vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~--g~~ 200 (406)
.+++++ .+|+++++| ||++++|+.....+...+..+ .......+ .-.+|++..+..+||++ .+|+. |+.
T Consensus 477 ~iAraL~~~p~lLlLD---EPT~gLD~~~~~~i~~ll~~l---~~~~g~tv-iivtHdl~~~~~~aDrv-ivl~~~~g~~ 548 (608)
T 3j16_B 477 AIVLALGIPADIYLID---EPSAYLDSEQRIICSKVIRRF---ILHNKKTA-FIVEHDFIMATYLADKV-IVFEGIPSKN 548 (608)
T ss_dssp HHHHHTTSCCSEEEEC---CTTTTCCHHHHHHHHHHHHHH---HHHHTCEE-EEECSCHHHHHHHCSEE-EECEEETTTE
T ss_pred HHHHHHHhCCCEEEEE---CCCCCCCHHHHHHHHHHHHHH---HHhCCCEE-EEEeCCHHHHHHhCCEE-EEEeCCCCeE
Confidence 445555 699999999 999999998864433322111 11111111 11239999999999999 66764 666
Q ss_pred cccCCC
Q 015465 201 VRLGDW 206 (406)
Q Consensus 201 ~~~~~~ 206 (406)
...++.
T Consensus 549 ~~~g~p 554 (608)
T 3j16_B 549 AHARAP 554 (608)
T ss_dssp EECCCC
T ss_pred EecCCh
Confidence 665543
No 71
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.99 E-value=5.3e-10 Score=101.83 Aligned_cols=61 Identities=26% Similarity=0.266 Sum_probs=47.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC-C-CCCCCCccccCCceeEEE-cCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLA-I-PAENFPFCTIEPNEARVN-IPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~-~-~~~~~p~~T~~p~~G~i~-v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
..+|+|+|.+|||||||+|.|++.. . ..++.|++|.......+. ..+ ..+.++||||+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAE-----------------PVAHLVDLPGYGY 91 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTS-----------------CSEEEEECCCCCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCC-----------------CcEEEEcCCCCCc
Confidence 4689999999999999999999986 2 457888888776655554 222 2489999999764
Q ss_pred c
Q 015465 101 G 101 (406)
Q Consensus 101 ~ 101 (406)
.
T Consensus 92 ~ 92 (223)
T 4dhe_A 92 A 92 (223)
T ss_dssp S
T ss_pred c
Confidence 3
No 72
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.98 E-value=1.4e-09 Score=103.26 Aligned_cols=64 Identities=28% Similarity=0.433 Sum_probs=40.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC------ccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFP------FCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p------~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl 98 (406)
.+|+|+|.+|+|||||+|+|++......++| ..|+.++.....+... .....+.++||||+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG-------------GVQLLLTIVDTPGF 75 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---------------CCEEEEEEECCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecC-------------CeEEEEEEEECCCc
Confidence 5899999999999999999999877555553 4555555554443221 01125899999998
Q ss_pred ccc
Q 015465 99 VRG 101 (406)
Q Consensus 99 ~~~ 101 (406)
...
T Consensus 76 ~d~ 78 (274)
T 3t5d_A 76 GDA 78 (274)
T ss_dssp SCC
T ss_pred ccc
Confidence 644
No 73
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.97 E-value=6.5e-11 Score=135.06 Aligned_cols=161 Identities=16% Similarity=0.234 Sum_probs=105.5
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhh-------hhccCCCCcCce
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPAF 89 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~p~~~~~~~ 89 (406)
..-.+++|+.++||||+|||||||+++|.|. .+|++|.|.++|.++..+. ..|.||...-..
T Consensus 437 isl~i~~G~~vaivG~sGsGKSTll~ll~~~-----------~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~ 505 (1321)
T 4f4c_A 437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRY-----------YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN 505 (1321)
T ss_dssp EEEEECTTCEEEEEECSSSCHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS
T ss_pred eEEeecCCcEEEEEecCCCcHHHHHHHhccc-----------cccccCcccCCCccchhccHHHHhhcccccCCcceeeC
Confidence 3446789999999999999999999999999 7899999999998765432 257888765555
Q ss_pred eEEEeeccccccccCCCCCcchhhhhHHhhh----------------------------chhhhhccc-CCCceEeecCC
Q 015465 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD----------------------------GIFHVLRAF-EDPDIIHVDDS 140 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad----------------------------~ll~vvda~-~~~~il~ld~~ 140 (406)
-++.|+..++...... +++.+.++.+. ..+.++||. .+|+++++|
T Consensus 506 ~TI~eNI~~g~~~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLD-- 579 (1321)
T 4f4c_A 506 CTIEENISLGKEGITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLD-- 579 (1321)
T ss_dssp EEHHHHHHTTCTTCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEE--
T ss_pred CchhHHHhhhcccchH----HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEe--
Confidence 6666665554321110 11111111111 014456665 799999999
Q ss_pred CCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhc---cccchHHHHHHHHHHHHHhhCCCccccCCC
Q 015465 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS---NDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (406)
Q Consensus 141 ~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~---~~h~~~~v~~l~~~i~~~L~~g~~~~~~~~ 206 (406)
||++.+|...+..+..- +..+.+ .+. .+|.+.-+ .-+|+| .+|++|+++..|+.
T Consensus 580 -E~tSaLD~~te~~i~~~-------l~~~~~--~~T~iiiaHrls~i-~~aD~I-ivl~~G~ive~Gth 636 (1321)
T 4f4c_A 580 -EATSALDAESEGIVQQA-------LDKAAK--GRTTIIIAHRLSTI-RNADLI-ISCKNGQVVEVGDH 636 (1321)
T ss_dssp -STTTTSCTTTHHHHHHH-------HHHHHT--TSEEEEECSCTTTT-TTCSEE-EEEETTEEEEEECH
T ss_pred -cccccCCHHHHHHHHHH-------HHHHhC--CCEEEEEcccHHHH-HhCCEE-EEeeCCeeeccCCH
Confidence 99999998765433222 222211 111 13777644 458888 78899998877653
No 74
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.96 E-value=5.9e-09 Score=90.89 Aligned_cols=83 Identities=24% Similarity=0.271 Sum_probs=57.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
-.+|+++|++|+|||||+|.|++........|..|.......+.+++.. ..+.++|+||......
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 73 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEK---------------VKLQIWDTAGQERFRT 73 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEE---------------EEEEEEEETTGGGCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEE---------------EEEEEEcCCCchhhhh
Confidence 3689999999999999999999987665666666666666677776642 2488999999543221
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+|+
T Consensus 74 -------~~~~~~~~~d~~i~v~d~ 91 (181)
T 3tw8_B 74 -------ITSTYYRGTHGVIVVYDV 91 (181)
T ss_dssp -------CCGGGGTTCSEEEEEEET
T ss_pred -------hHHHHhccCCEEEEEEEC
Confidence 122345678888887766
No 75
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.96 E-value=3.8e-10 Score=105.74 Aligned_cols=89 Identities=12% Similarity=0.009 Sum_probs=59.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCc--cccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPF--CTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~--~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
...+|+|+|++|||||||+|+|+|.......+++ +|..+..+.+.+.+. .+.++||||+..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~i~liDTPG~~~ 82 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC-----------------HVEVVDTPDIFS 82 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTE-----------------EEEEEECCSCSS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCc-----------------EEEEEECCCCCC
Confidence 4579999999999999999999999876654443 788888888887765 389999999875
Q ss_pred cccCC-CCCcchhhhhH----Hhhhchhhhhcc
Q 015465 101 GAHEG-QGLGNSFLSHI----RAVDGIFHVLRA 128 (406)
Q Consensus 101 ~~~~~-~~l~~~~l~~l----~~ad~ll~vvda 128 (406)
..... ..+...+...+ +.+|++++|+|+
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~ 115 (247)
T 3lxw_A 83 SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL 115 (247)
T ss_dssp TTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEET
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeC
Confidence 43321 22222222222 566777777665
No 76
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.94 E-value=4.3e-10 Score=108.65 Aligned_cols=88 Identities=24% Similarity=0.290 Sum_probs=66.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..++|+|+||||||||+|.|+|....+ ++.|+||.....|.+...+ .++.++||||+.....
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~-----------------~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR-----------------RQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-----------------EEEEEEECCCCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC-----------------cEEEEecCccccchhh
Confidence 369999999999999999999998754 7889999988877766543 3589999999875432
Q ss_pred C-CCCCcchhhhhHHhhhchhhhhccc
Q 015465 104 E-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 104 ~-~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
. ...+.......++.+|++++|+|+.
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~ 97 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLR 97 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETT
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECC
Confidence 1 1112223345567889999998885
No 77
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.94 E-value=2.5e-09 Score=105.59 Aligned_cols=63 Identities=32% Similarity=0.348 Sum_probs=52.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
....+++++|+||||||||+|.|+|....+.++|++|..+..+.+...+. .+.++||||+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYF-----------------RYQIIDTPGLLDR 227 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTE-----------------EEEEEECTTTSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCc-----------------eEEEEeCCCcccc
Confidence 34579999999999999999999998866678999999888887766543 4899999998653
No 78
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.94 E-value=1e-08 Score=90.78 Aligned_cols=98 Identities=20% Similarity=0.089 Sum_probs=54.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh---------hh-------------hcc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------CQ-------------LFK 81 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---------~~-------------~~~ 81 (406)
..+|+++|++|+|||||+|.|++........|..+.......+.+++...... .. ...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 46899999999999999999999865433223222333334455554321000 00 000
Q ss_pred CCCCcCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 82 PKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 82 p~~~~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+.......+.++|+||..... ......++.+|++++|+|+
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~ 126 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYA-------SIVPLYYRGATCAIVVFDI 126 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCT-------TTHHHHHTTCSEEEEEEET
T ss_pred cCccceeEEEEEECCCcHHHH-------HHHHHHhcCCCEEEEEEEC
Confidence 001111468999999954321 1223445778888887766
No 79
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.93 E-value=8.9e-09 Score=92.37 Aligned_cols=99 Identities=19% Similarity=0.150 Sum_probs=50.7
Q ss_pred cCcCCCCcCccccccC-CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCC
Q 015465 7 KSKEAPAERPILGRFS-SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85 (406)
Q Consensus 7 ~~~~~~~~~~~~g~v~-~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~ 85 (406)
.+.++|+..+..+... ...+|+|+|++|+|||||+|.|++.... ..++.++.......+.+.+.
T Consensus 6 ~~~~~~~~~~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~-------------- 70 (201)
T 3oes_A 6 HHSSGRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKD-------------- 70 (201)
T ss_dssp -----------------CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC------------------
T ss_pred ccccccccCCCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCE--------------
Confidence 3444566666666543 4578999999999999999999987543 22332222222333333332
Q ss_pred cCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
...+.++|++|...... .....++.+|+++.|+|+
T Consensus 71 -~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~d~ 105 (201)
T 3oes_A 71 -EFHLHLVDTAGQDEYSI-------LPYSFIIGVHGYVLVYSV 105 (201)
T ss_dssp -CEEEEEEEECCCCTTCC-------CCGGGTTTCCEEEEEEET
T ss_pred -EEEEEEEECCCccchHH-------HHHHHHhcCCEEEEEEeC
Confidence 23478999999543221 122345678888777766
No 80
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.92 E-value=7.4e-10 Score=102.74 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=47.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC--ccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP--FCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p--~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
..+|+|+|++|||||||+|+|+|.....+..| ++|..+..+.+.+.+. .+.++||||+...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~i~liDTpG~~~~ 91 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET-----------------ELVVVDTPGIFDT 91 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE-----------------EEEEEECCSCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc-----------------eEEEEECCCccCC
Confidence 36899999999999999999999987666666 7788888888888764 3899999998865
Q ss_pred cc
Q 015465 102 AH 103 (406)
Q Consensus 102 ~~ 103 (406)
..
T Consensus 92 ~~ 93 (239)
T 3lxx_A 92 EV 93 (239)
T ss_dssp --
T ss_pred CC
Confidence 43
No 81
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.91 E-value=7.5e-09 Score=91.80 Aligned_cols=82 Identities=22% Similarity=0.235 Sum_probs=59.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+|+|+|++|+|||||+|.|++........|..|.......+.+++.. ..+.++|+||.....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~-- 79 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERFR-- 79 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGC--
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEE---------------EEEEEEECCCcHhhh--
Confidence 589999999999999999999987666666666666666777776642 248899999943221
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 80 -----~~~~~~~~~~d~~i~v~d~ 98 (196)
T 3tkl_A 80 -----TITSSYYRGAHGIIVVYDV 98 (196)
T ss_dssp -----TTHHHHHTTCSEEEEEEET
T ss_pred -----hhHHHHHhhCCEEEEEEEC
Confidence 1223455778888887766
No 82
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.91 E-value=4.8e-10 Score=115.07 Aligned_cols=91 Identities=32% Similarity=0.351 Sum_probs=73.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccc-
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV- 99 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~- 99 (406)
+.+.+|+|+|+||||||||+|.|++... .++++|+||.++..+.+.++|.+ +.++||||+.
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~-----------------~~l~DTaG~~~ 303 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL-----------------FRIVDTAGVRS 303 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE-----------------EEEEESSCCCS
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE-----------------EEEEECCCccc
Confidence 3568999999999999999999999865 46899999999999999988753 8999999987
Q ss_pred ccccCCCCCc-chhhhhHHhhhchhhhhccc
Q 015465 100 RGAHEGQGLG-NSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 100 ~~~~~~~~l~-~~~l~~l~~ad~ll~vvda~ 129 (406)
......+.++ ...+..++.+|++++|+|+.
T Consensus 304 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s 334 (482)
T 1xzp_A 304 ETNDLVERLGIERTLQEIEKADIVLFVLDAS 334 (482)
T ss_dssp SCCTTCCCCCHHHHHHHHHHCSEEEEEEETT
T ss_pred cchhhHHHHHHHHHHHHhhcccEEEEEecCC
Confidence 5443333333 23457789999999999985
No 83
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.90 E-value=1.7e-08 Score=87.16 Aligned_cols=83 Identities=23% Similarity=0.194 Sum_probs=52.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+++++|++|+|||||++.+++........|..+.......+.+++.. ..+.++|+||......
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~ 70 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKR---------------VNLAIWDTAGQERFHA 70 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCE---------------EEEEEEECCCC-----
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEE---------------EEEEEEECCCcHhhhh
Confidence 4689999999999999999999876544334433333344455665542 2478999999543221
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+ ....++.+|++++|+|+
T Consensus 71 ----~---~~~~~~~~d~~i~v~d~ 88 (170)
T 1z08_A 71 ----L---GPIYYRDSNGAILVYDI 88 (170)
T ss_dssp ---------CCSSTTCSEEEEEEET
T ss_pred ----h---HHHHhccCCEEEEEEEC
Confidence 1 11234567777776665
No 84
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.90 E-value=5.5e-09 Score=99.31 Aligned_cols=67 Identities=27% Similarity=0.225 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----hhhccCCC-CcCceeEEEeecccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKS-AVPAFLEIHDIAGLV 99 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~~~~~p~~-~~~~~i~lvD~~gl~ 99 (406)
..+||+||||||||||+|+|+|. ..|++|.+.+.|.++... ...+.+|. .+...++++|++++.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~-----------~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKS-----------QVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH-----------HC------------CCCCCSCCEEEESCC----CCEEEEECCCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhh
Confidence 47899999999999999999999 678899998887654221 12355555 456678999999987
Q ss_pred ccc
Q 015465 100 RGA 102 (406)
Q Consensus 100 ~~~ 102 (406)
...
T Consensus 72 ~~~ 74 (270)
T 3sop_A 72 DQI 74 (270)
T ss_dssp CCS
T ss_pred hhc
Confidence 544
No 85
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.89 E-value=2.4e-08 Score=85.61 Aligned_cols=81 Identities=23% Similarity=0.243 Sum_probs=51.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|+|||||++.|++... ...++.++.......+.+++.. ..+.++|+||.....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~-- 66 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDYA-- 66 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC---CH--
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCEE---------------EEEEEEECCCcchhH--
Confidence 5899999999999999999998753 2334444433333444555432 248899999954321
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 67 -----~~~~~~~~~~d~~i~v~d~ 85 (168)
T 1u8z_A 67 -----AIRDNYFRSGEGFLCVFSI 85 (168)
T ss_dssp -----HHHHHHHHHCSEEEEEEET
T ss_pred -----HHHHHHhhcCCEEEEEEEC
Confidence 1223445778888777665
No 86
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.89 E-value=2.3e-08 Score=85.97 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|||||||+|.|++........|..+.+.....+.+++.. ..+.++|+||......
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~- 69 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDED---------------VRLMLWDTAGQEEFDA- 69 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEE---------------EEEEEECCTTGGGTTC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEE---------------EEEEEEcCCCcHhHHH-
Confidence 589999999999999999999875543333333334444555555432 3589999999543211
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+|+
T Consensus 70 ------~~~~~~~~~d~~i~v~d~ 87 (168)
T 1z2a_A 70 ------ITKAYYRGAQACVLVFST 87 (168)
T ss_dssp ------CCHHHHTTCCEEEEEEET
T ss_pred ------HHHHHhcCCCEEEEEEEC
Confidence 122445678888777665
No 87
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.89 E-value=1.6e-09 Score=94.31 Aligned_cols=60 Identities=35% Similarity=0.543 Sum_probs=47.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
.+++|+|+||||||||+|.|+|.....+++|++|.++..+.+.+++. .+.++||||....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE-----------------KFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTE-----------------EEEEEECCCCSCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCc-----------------EEEEEECCCcccC
Confidence 57999999999999999999998766788899899988888887653 3899999997653
No 88
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.89 E-value=1.9e-08 Score=89.05 Aligned_cols=83 Identities=20% Similarity=0.212 Sum_probs=52.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
-.+|+|+|++|+|||||+|.|++........|..+.......+.+.+.. ..+.++|++|.....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~- 85 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR---------------IKLQIWDTAGQERYR- 85 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEE---------------EEEEEEECCSCCSSC-
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeE---------------EEEEEEeCCCcHHHh-
Confidence 3689999999999999999999886433322222222223334444322 248999999954321
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 86 ------~~~~~~~~~~d~ii~v~d~ 104 (189)
T 2gf9_A 86 ------TITTAYYRGAMGFLLMYDI 104 (189)
T ss_dssp ------CSGGGGGTTCSEEEEEEET
T ss_pred ------hhHHHhccCCCEEEEEEEC
Confidence 1223445678888887765
No 89
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.88 E-value=2e-08 Score=89.23 Aligned_cols=86 Identities=27% Similarity=0.163 Sum_probs=55.9
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
-....+|+|+|++|+|||||++.|++........|..+.......+.+++.. ..+.++|++|...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQ---------------IKLQIWDTAGQES 82 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEE---------------EEEEEECCTTGGG
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEECCCchh
Confidence 3345689999999999999999999876544444444444445556665532 2489999999543
Q ss_pred cccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 101 ~~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
... .....++.+|+++.|+|+
T Consensus 83 ~~~-------~~~~~~~~~d~ii~v~d~ 103 (191)
T 2a5j_A 83 FRS-------ITRSYYRGAAGALLVYDI 103 (191)
T ss_dssp TSC-------CCHHHHTTCSEEEEEEET
T ss_pred hhh-------hHHHHhccCCEEEEEEEC
Confidence 221 122445778888887766
No 90
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.88 E-value=1.8e-08 Score=87.05 Aligned_cols=83 Identities=24% Similarity=0.185 Sum_probs=48.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|+|||||++.+++........+.+|.......+.+++.. ..+.++|++|.......
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~~~ 67 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEE---------------VTLIVYDIWEQGDAGGW 67 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEE---------------EEEEEECCCCC------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeE---------------EEEEEEECCCccccchh
Confidence 478999999999999999999876554444555555666666666543 34789999997543210
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+. ...++.+|+++.|+|+
T Consensus 68 ---~~---~~~~~~~d~~i~v~d~ 85 (169)
T 3q85_A 68 ---LQ---DHCLQTGDAFLIVFSV 85 (169)
T ss_dssp --------CHHHHHCSEEEEEEET
T ss_pred ---hh---hhhhccCCEEEEEEEC
Confidence 11 1235667888777665
No 91
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.87 E-value=9.5e-09 Score=89.48 Aligned_cols=82 Identities=21% Similarity=0.213 Sum_probs=50.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+|+++|++|+|||||+|.+++........|..+.......+.+++.. ..+.++|+||.....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~-- 70 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHF---------------VTMQIWDTAGQERFR-- 70 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEE---------------EEEEEEECCCCGGGH--
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEE---------------EEEEEEeCCCchhhh--
Confidence 589999999999999999999875543333333333334455555432 248999999953221
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+++
T Consensus 71 -----~~~~~~~~~~~~~i~v~d~ 89 (177)
T 1wms_A 71 -----SLRTPFYRGSDCCLLTFSV 89 (177)
T ss_dssp -----HHHGGGGTTCSEEEEEEET
T ss_pred -----hhHHHHHhcCCEEEEEEEC
Confidence 1122334567777666655
No 92
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.87 E-value=1.7e-08 Score=86.91 Aligned_cols=82 Identities=26% Similarity=0.248 Sum_probs=53.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|+|||||+|.+++........|..+.......+.+++.. ..+.++|+||......
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~~- 67 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK---------------VKLQIWDTAGQERFRT- 67 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCE---------------EEEEEECCTTGGGTSC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEeCCCChhhhh-
Confidence 579999999999999999999886544444544444445556665532 2488999999543221
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+|+
T Consensus 68 ------~~~~~~~~~d~~i~v~d~ 85 (170)
T 1g16_A 68 ------ITTAYYRGAMGIILVYDI 85 (170)
T ss_dssp ------CCHHHHTTEEEEEEEEET
T ss_pred ------hHHHHhccCCEEEEEEEC
Confidence 123456778888887776
No 93
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.87 E-value=2.5e-08 Score=87.56 Aligned_cols=82 Identities=24% Similarity=0.286 Sum_probs=54.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|++|||||||+|.|++... ...++.++.......+.+++.. ..+.++|+||......
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 67 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYSA 67 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCC---CT
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcE---------------EEEEEEECCCcHHHHH
Confidence 35899999999999999999998753 3455556555555556665542 2478899999543211
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+++
T Consensus 68 -------~~~~~~~~~~~~i~v~d~ 85 (189)
T 4dsu_A 68 -------MRDQYMRTGEGFLCVFAI 85 (189)
T ss_dssp -------THHHHHHHCSEEEEEEET
T ss_pred -------HHHHHHhcCCEEEEEEEC
Confidence 122345678888777665
No 94
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.87 E-value=3.2e-08 Score=88.41 Aligned_cols=82 Identities=23% Similarity=0.232 Sum_probs=54.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+|+|++|||||||++.|++... ...++.++.......+.+++.. ..+.++|+||.....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~- 76 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDYA- 76 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTCCH-
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEE---------------EEEEEEcCCChhhhH-
Confidence 46899999999999999999998753 3445555544444555555432 248899999954321
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 77 ------~~~~~~~~~~~~~i~v~d~ 95 (206)
T 2bov_A 77 ------AIRDNYFRSGEGFLCVFSI 95 (206)
T ss_dssp ------HHHHHHHHHCSEEEEEEET
T ss_pred ------HHHHHHHhhCCEEEEEEEC
Confidence 1222445677887776665
No 95
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.87 E-value=3.9e-09 Score=93.33 Aligned_cols=57 Identities=30% Similarity=0.230 Sum_probs=42.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
..+++++|++|||||||+|.|++... ...+.+++|........ . ..+.++|+||+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~i~Dt~G~~~ 80 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV--N------------------SKYYFVDLPGYGY 80 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE--T------------------TTEEEEECCCBSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE--C------------------CcEEEEECCCCcc
Confidence 45899999999999999999999864 33566666655443322 1 1378999999754
No 96
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.86 E-value=5.4e-09 Score=105.96 Aligned_cols=89 Identities=21% Similarity=0.225 Sum_probs=57.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
..+++++|.+|+|||||+|.|+|.... ++++|++|.+...+.+.++|.. +.++||||+....
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-----------------~~l~DT~G~~~~~ 237 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE-----------------FVIVDTAGMRKKG 237 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE-----------------EEETTHHHHTCBT
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE-----------------EEEEECCCcCcCc
Confidence 369999999999999999999998764 5889999999988888887653 7999999986543
Q ss_pred cCCCCCc----chhhhhHHhhhchhhhhccc
Q 015465 103 HEGQGLG----NSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~~~l~----~~~l~~l~~ad~ll~vvda~ 129 (406)
.....+. .+.+..++.+|+++.|+|+.
T Consensus 238 ~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~ 268 (436)
T 2hjg_A 238 KVYETTEKYSVLRALKAIDRSEVVAVVLDGE 268 (436)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETT
T ss_pred cccchHHHHHHHHHHHHHHhCCEEEEEEcCC
Confidence 3211111 11224567788888877764
No 97
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.86 E-value=1.1e-09 Score=104.35 Aligned_cols=60 Identities=33% Similarity=0.509 Sum_probs=51.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
..+|+|+|+||||||||||.|+|....++++|++|.++..|.+.. +. .+.++|+||....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~-----------------~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NK-----------------DLEIQDLPGIYSM 62 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CT-----------------TEEEEECCCCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CC-----------------eEEEEECCCcCcc
Confidence 358999999999999999999998877899999999988887654 33 3899999997643
No 98
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.86 E-value=1.9e-08 Score=89.68 Aligned_cols=83 Identities=23% Similarity=0.264 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|++|+|||||+|.|++........|..+.+.....+.+++.. ..+.++|++|....
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~-- 88 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK---------------IRLQIWDTAGQERF-- 88 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEE---------------EEEEEEEECCSGGG--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeE---------------EEEEEEeCCCcHHH--
Confidence 3689999999999999999999875543334444444444555555432 24899999995422
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.......++.+|+++.|+|+
T Consensus 89 -----~~~~~~~~~~~d~iilV~D~ 108 (192)
T 2il1_A 89 -----NSITSAYYRSAKGIILVYDI 108 (192)
T ss_dssp -----HHHHHHHHHHCSEEEEEEET
T ss_pred -----HHHHHHHhcCCCEEEEEEEC
Confidence 11233456788888887776
No 99
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.86 E-value=3.3e-08 Score=86.53 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=52.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+|+++|++|+|||||++.+++... ...++.++.......+.+++.. ..+.++|+||......
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~- 69 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQE---------------YHLQLVDTAGQDEYSI- 69 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCCCTTCC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCEE---------------EEEEEEeCCCchhhhH-
Confidence 5899999999999999999996543 3344444433334555555532 2478999999654321
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+. ...++.+|+++.|+|+
T Consensus 70 ---~~---~~~~~~~~~~i~v~d~ 87 (181)
T 3t5g_A 70 ---FP---QTYSIDINGYILVYSV 87 (181)
T ss_dssp ---CC---GGGTTTCSEEEEEEET
T ss_pred ---HH---HHHHhcCCEEEEEEEC
Confidence 11 1334667887777665
No 100
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.86 E-value=4.2e-08 Score=85.85 Aligned_cols=82 Identities=23% Similarity=0.232 Sum_probs=53.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|++|+|||||++.|++... ...++.++.......+.+++.. ..+.++|+||.....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~- 80 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDYA- 80 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTCCH-
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEE---------------EEEEEEECCCCcccH-
Confidence 36899999999999999999998753 2344444444334445555432 248899999954321
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 81 ------~~~~~~~~~~d~~i~v~d~ 99 (187)
T 2a9k_A 81 ------AIRDNYFRSGEGFLCVFSI 99 (187)
T ss_dssp ------HHHHHHHHHCSEEEEEEET
T ss_pred ------HHHHHHhccCCEEEEEEEC
Confidence 1223445778888777665
No 101
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.85 E-value=1.2e-08 Score=90.47 Aligned_cols=85 Identities=25% Similarity=0.275 Sum_probs=55.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+|+++|++|+|||||+|.|++........|..+.+.....+.+++.. ..+.++|++|.....
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~ 83 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER---------------IKIQLWDTAGQERFR 83 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEE---------------EEEEEEECCCSHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEE---------------EEEEEEECCCchhhh
Confidence 34799999999999999999999875544434444444444555565532 248999999954321
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. ......++.+|+++.|+|+
T Consensus 84 ~------~~~~~~~~~~d~iilv~D~ 103 (189)
T 1z06_A 84 K------SMVQHYYRNVHAVVFVYDM 103 (189)
T ss_dssp T------TTHHHHHTTCCEEEEEEET
T ss_pred h------hhhHHHhcCCCEEEEEEEC
Confidence 0 1122345678888887766
No 102
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.85 E-value=2e-08 Score=89.95 Aligned_cols=83 Identities=24% Similarity=0.235 Sum_probs=56.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+|+|++|+|||||++.|++........|..+.+.....+.+++.. ..+.++|+||......
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~ 72 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL---------------VTMQIWDTAGQERFQS 72 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCE---------------EEEEEEEECSSGGGSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEE---------------EEEEEEeCCCcHHHHH
Confidence 4689999999999999999999886544444444444455556665532 2489999999543221
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+ ....++.+|++++|+|+
T Consensus 73 ----~---~~~~~~~~d~~i~v~d~ 90 (207)
T 1vg8_A 73 ----L---GVAFYRGADCCVLVFDV 90 (207)
T ss_dssp ----S---CCGGGTTCSEEEEEEET
T ss_pred ----h---HHHHHhCCcEEEEEEEC
Confidence 1 12345678888887766
No 103
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.85 E-value=8.7e-08 Score=83.17 Aligned_cols=82 Identities=21% Similarity=0.176 Sum_probs=57.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+|+++|++|+|||||+|.|++........|..+.+.....+.+++.. ..+.++|+||.....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~-- 77 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERFR-- 77 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGG--
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeE---------------EEEEEEECCCcHHHH--
Confidence 689999999999999999999876554445555555555666666542 248999999954321
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 78 -----~~~~~~~~~~d~~i~v~d~ 96 (179)
T 2y8e_A 78 -----SLIPSYIRDSTVAVVVYDI 96 (179)
T ss_dssp -----GGSHHHHHTCSEEEEEEET
T ss_pred -----HHHHHHhcCCCEEEEEEEC
Confidence 1223446778888877765
No 104
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.84 E-value=1.3e-09 Score=110.64 Aligned_cols=87 Identities=31% Similarity=0.390 Sum_probs=58.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
+|+|||.||+|||||||.|+|.... ++++|++|++...+.+.+.|.. +.++||+|+......
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~-----------------~~l~DT~G~~~~~~~ 65 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT-----------------FKLVDTCGVFDNPQD 65 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE-----------------EEEEECTTTTSSGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE-----------------EEEEECCCccccccc
Confidence 6899999999999999999998765 4899999999999999998753 789999998753221
Q ss_pred C--CCCcchhhhhHHhhhchhhhhccc
Q 015465 105 G--QGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 105 ~--~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
. ..+..+....++.+|++++|+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~ad~il~V~D~~ 92 (439)
T 1mky_A 66 IISQKMKEVTLNMIREADLVLFVVDGK 92 (439)
T ss_dssp CCCHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 1 112233455678999999999975
No 105
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.84 E-value=4.8e-08 Score=83.85 Aligned_cols=81 Identities=21% Similarity=0.203 Sum_probs=50.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|+|||||+|.+++.... ..++.++.......+.+++.. ..+.++|+||.....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~-- 65 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDCQQ---------------CMLEILDTAGTEQFT-- 65 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEESSSCE---------------EEEEEEEECSSCSST--
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEECCEE---------------EEEEEEECCChHHHH--
Confidence 57999999999999999999986432 222222222222233444322 348899999954322
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 66 -----~~~~~~~~~~d~~i~v~d~ 84 (167)
T 1c1y_A 66 -----AMRDLYMKNGQGFALVYSI 84 (167)
T ss_dssp -----THHHHHHHHCSEEEEEEET
T ss_pred -----HHHHHHhccCCEEEEEEEC
Confidence 1222445678888777665
No 106
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.84 E-value=6.4e-09 Score=106.01 Aligned_cols=90 Identities=21% Similarity=0.196 Sum_probs=61.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
...+++++|.+|+|||||+|.|+|... .++++|++|.++....+.+++. .+.++||||+...
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~-----------------~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ-----------------EFVIVDTAGMRKK 256 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE-----------------EEEETTGGGTTTB
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc-----------------eEEEEECCCCCcC
Confidence 457999999999999999999998864 4589999999999999888765 3899999998754
Q ss_pred ccCCCCC----cchhhhhHHhhhchhhhhccc
Q 015465 102 AHEGQGL----GNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 102 ~~~~~~l----~~~~l~~l~~ad~ll~vvda~ 129 (406)
....... ....+..++.+|++++|+|+.
T Consensus 257 ~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~ 288 (456)
T 4dcu_A 257 GKVYETTEKYSVLRALKAIDRSEVVAVVLDGE 288 (456)
T ss_dssp TTBCCCCSHHHHHHHHHHHHHCSEEEEEEETT
T ss_pred cccchHHHHHHHHHHHHHHhhCCEEEEEEeCC
Confidence 3221111 112234567788888877763
No 107
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.84 E-value=3.8e-08 Score=88.31 Aligned_cols=82 Identities=23% Similarity=0.249 Sum_probs=57.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+|+|+|++|+|||||++.|++........|..+.......+.+++.. ..+.++|+||......
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~- 72 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKT---------------VKLQIWDTAGQERFRT- 72 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEE---------------EEEEEECCTTTTTTTC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEeCCChHHHHH-
Confidence 689999999999999999999986655555555555555666666542 2489999999543221
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|++++|+|+
T Consensus 73 ------~~~~~~~~~d~vilv~d~ 90 (206)
T 2bcg_Y 73 ------ITSSYYRGSHGIIIVYDV 90 (206)
T ss_dssp ------CCGGGGTTCSEEEEEEET
T ss_pred ------HHHHhccCCCEEEEEEEC
Confidence 122445678888887766
No 108
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.83 E-value=1.6e-08 Score=88.19 Aligned_cols=84 Identities=20% Similarity=0.193 Sum_probs=50.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|++|||||||++.+++........|..+.+.....+.+++.. ...+.++|+||......
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~~~~~ 73 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK--------------VATMQVWDTAGQERFQS 73 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSC--------------CEEEEEECCC-------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCc--------------EEEEEEEECCCChHhhh
Confidence 3689999999999999999999876544444444455555566655221 23589999999543211
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+|+
T Consensus 74 -------~~~~~~~~~d~~i~v~d~ 91 (182)
T 1ky3_A 74 -------LGVAFYRGADCCVLVYDV 91 (182)
T ss_dssp ----------CCSTTCCEEEEEEET
T ss_pred -------hhHHHhhcCCEEEEEEEC
Confidence 112334667887777665
No 109
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.83 E-value=7.8e-08 Score=82.23 Aligned_cols=81 Identities=22% Similarity=0.203 Sum_probs=50.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+|+++|++|+|||||++.+++.... ..++.++.......+.+++.. ..+.++|+||.....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~-- 65 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFYRKEIEVDSSP---------------SVLEILDTAGTEQFA-- 65 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTCCH--
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc-ccCCCCcceeEEEEEEECCEE---------------EEEEEEECCCchhhH--
Confidence 58999999999999999999976532 223333222223344444432 247899999954221
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 66 -----~~~~~~~~~~~~~i~v~d~ 84 (167)
T 1kao_A 66 -----SMRDLYIKNGQGFILVYSL 84 (167)
T ss_dssp -----HHHHHHHHHCSEEEEEEET
T ss_pred -----HHHHHHhccCCEEEEEEeC
Confidence 1222345677777776665
No 110
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.82 E-value=2.7e-08 Score=88.01 Aligned_cols=83 Identities=28% Similarity=0.286 Sum_probs=54.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|++|+|||||++.|++........|..+.......+.+++.. ..+.++|+||.....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~- 78 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK---------------AKLAIWDTAGQERFR- 78 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECSSGGGC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeE---------------EEEEEEeCCCchhhh-
Confidence 3689999999999999999999876543333333333344455555432 348899999954321
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|++++|+|+
T Consensus 79 ------~~~~~~~~~~d~ii~v~d~ 97 (195)
T 1x3s_A 79 ------TLTPSYYRGAQGVILVYDV 97 (195)
T ss_dssp ------CSHHHHHTTCCEEEEEEET
T ss_pred ------hhhHHHhccCCEEEEEEEC
Confidence 1223445778888887766
No 111
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.82 E-value=4.3e-10 Score=123.37 Aligned_cols=42 Identities=31% Similarity=0.364 Sum_probs=38.0
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCC
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g 70 (406)
...+..|+++||+||||||||||+++|+|. ..|++|.|.+.+
T Consensus 693 Sl~I~~GeivaIiGpNGSGKSTLLklLaGl-----------l~P~sG~I~~~~ 734 (986)
T 2iw3_A 693 NFQCSLSSRIAVIGPNGAGKSTLINVLTGE-----------LLPTSGEVYTHE 734 (986)
T ss_dssp EEEEETTCEEEECSCCCHHHHHHHHHHTTS-----------SCCSEEEEEECT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEEcC
Confidence 345779999999999999999999999999 789999999875
No 112
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.82 E-value=2.3e-08 Score=87.03 Aligned_cols=84 Identities=21% Similarity=0.280 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+++++|++|+|||||++.|++........|..+.+.....+.+++.. ...+.++|++|.....
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~~~~~Dt~G~~~~~- 70 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL--------------NVTLQIWDIGGQTIGG- 70 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTE--------------EEEEEEEECTTCCTTC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCCcccc-
Confidence 4689999999999999999999874322112222233444556665411 1358999999954321
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 71 ------~~~~~~~~~~d~~i~v~d~ 89 (178)
T 2hxs_A 71 ------KMLDKYIYGAQGVLLVYDI 89 (178)
T ss_dssp ------TTHHHHHTTCSEEEEEEET
T ss_pred ------chhhHHHhhCCEEEEEEEC
Confidence 1223446778888887776
No 113
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.82 E-value=2.2e-08 Score=89.83 Aligned_cols=85 Identities=25% Similarity=0.210 Sum_probs=58.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+|+|+|++|||||||++.++|........|.+|.+.....+.+++.. ..+.++|++|.....
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~Dt~g~~~~~ 86 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE---------------VTLVVYDIWEQGDAG 86 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEE---------------EEEEEECCCCCSGGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEE---------------EEEEEEecCCCccch
Confidence 34699999999999999999998765544556666666666777777653 247889999864321
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. .+ ....++.+|+++.|+|+
T Consensus 87 ~---~~---~~~~~~~~d~~ilv~d~ 106 (195)
T 3cbq_A 87 G---WL---RDHCLQTGDAFLIVFSV 106 (195)
T ss_dssp H---HH---HHHHHHHCSEEEEEEET
T ss_pred h---hh---HHHhhccCCEEEEEEEC
Confidence 0 01 11234667777776665
No 114
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.81 E-value=3.4e-08 Score=86.71 Aligned_cols=83 Identities=22% Similarity=0.223 Sum_probs=55.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|++|||||||++.+++........|..+.......+.+++.. ..+.++|+||.....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~- 73 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKY---------------VKLQIWDTAGQERFR- 73 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEE---------------EEEEEEEECCSGGGH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCCcHHHH-
Confidence 3689999999999999999999886555445554544555556665532 248999999954321
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 74 ------~~~~~~~~~~d~~i~v~d~ 92 (186)
T 2bme_A 74 ------SVTRSYYRGAAGALLVYDI 92 (186)
T ss_dssp ------HHHHTTSTTCSEEEEEEET
T ss_pred ------HHHHHHHhcCCEEEEEEEC
Confidence 1222345667777776665
No 115
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.81 E-value=4e-08 Score=86.49 Aligned_cols=90 Identities=18% Similarity=0.170 Sum_probs=51.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCc---eeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~---~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
..+|+|+|++|+|||||++.|++........| |+..+ ...+.+.+..-. ... ......+.++|+||...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFIT--TVGIDFREKRVVYRANGPDG----AVG--RGQRIHLQLWDTAGLER 82 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEEEECTTSCCC----SSC--CCEEEEEEEEEECCSGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCccc--ccceeeeeEEEEEecCCccc----ccc--cCcEEEEEEEeCCCcHH
Confidence 36899999999999999999998754322222 22222 223333332100 000 00023589999999643
Q ss_pred cccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 101 ~~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. .......++.+|+++.|+|+
T Consensus 83 ~-------~~~~~~~~~~~d~~i~v~d~ 103 (195)
T 3bc1_A 83 F-------RSLTTAFFRDAMGFLLLFDL 103 (195)
T ss_dssp G-------HHHHHHTTTTCSEEEEEEET
T ss_pred H-------HHHHHHHHcCCCEEEEEEEC
Confidence 2 11223445677888777766
No 116
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.81 E-value=5.3e-08 Score=86.36 Aligned_cols=83 Identities=22% Similarity=0.246 Sum_probs=51.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+|+|++|+|||||+|.|++........|..+.......+.+.+.. ..+.++|++|.....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~- 88 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA---------------VKAQIWDTAGLERYR- 88 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEE---------------EEEEEEEESCCCTTC-
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEeCCCchhhh-
Confidence 4689999999999999999999875433222211111222233333321 348899999974321
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 89 ------~~~~~~~~~~d~vi~v~D~ 107 (193)
T 2oil_A 89 ------AITSAYYRGAVGALLVFDL 107 (193)
T ss_dssp ------TTHHHHHTTCCEEEEEEET
T ss_pred ------hhhHHHhccCCEEEEEEEC
Confidence 1223445677887777665
No 117
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.80 E-value=3.6e-08 Score=88.99 Aligned_cols=83 Identities=24% Similarity=0.247 Sum_probs=54.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+|+|++|+|||||++.+++........|..+.+.....+.+++.. ..+.++|++|.....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~~- 89 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK---------------VKLQIWDTAGQERFR- 89 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGH-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCcHHHH-
Confidence 3689999999999999999999876544444443444444556666542 248999999953211
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 90 ------~~~~~~~~~~d~~i~v~D~ 108 (201)
T 2ew1_A 90 ------SITQSYYRSANALILTYDI 108 (201)
T ss_dssp ------HHHGGGSTTCSEEEEEEET
T ss_pred ------HHHHHHHhcCCEEEEEEEC
Confidence 1122345667777776665
No 118
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.80 E-value=8.9e-08 Score=83.28 Aligned_cols=82 Identities=22% Similarity=0.175 Sum_probs=54.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|++|+|||||+|.|++... ..+++.++.......+.+++.. ..+.++|++|.....
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~- 71 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDGIP---------------ARLDILDTAGQEEFG- 71 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTTTS-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECCEE---------------EEEEEEECCCchhhH-
Confidence 36899999999999999999998743 2445555444444455555432 247899999954321
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 72 ------~~~~~~~~~~d~~i~v~d~ 90 (181)
T 2fn4_A 72 ------AMREQYMRAGHGFLLVFAI 90 (181)
T ss_dssp ------CCHHHHHHHCSEEEEEEET
T ss_pred ------HHHHHHHhhCCEEEEEEeC
Confidence 1122445778888777665
No 119
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.80 E-value=6e-08 Score=84.21 Aligned_cols=83 Identities=25% Similarity=0.226 Sum_probs=52.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+++++|++|+|||||+|.|++........|..+.......+.+++.. ..+.++|+||....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~-- 77 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK---------------IKLQIWDTAGQERF-- 77 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEE---------------EEEEEEECTTGGGT--
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeE---------------EEEEEEECCCChHh--
Confidence 4689999999999999999999875432222222222223344444432 24899999995422
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.......++.+|+++.|+|+
T Consensus 78 -----~~~~~~~~~~~d~~i~v~d~ 97 (179)
T 1z0f_A 78 -----RAVTRSYYRGAAGALMVYDI 97 (179)
T ss_dssp -----CHHHHHHHHTCSEEEEEEET
T ss_pred -----hhhHHHHhccCCEEEEEEeC
Confidence 12233456778888887766
No 120
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.80 E-value=6.7e-09 Score=94.12 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=52.7
Q ss_pred CCcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeE
Q 015465 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (406)
Q Consensus 12 ~~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~ 91 (406)
|+.+........-.+|+|+|++|+|||||++.|++........|..+.......+.+++..... .........+.
T Consensus 13 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~ 87 (217)
T 2f7s_A 13 GLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG-----SSGKAFKVHLQ 87 (217)
T ss_dssp --------CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC------------CCEEEEEEE
T ss_pred CcCcCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccc-----cccCceeEEEE
Confidence 4444444444555799999999999999999999875422111111111222233333320000 00001123589
Q ss_pred EEeeccccccccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 92 lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
++|++|..... ......++.+|++++|+|+
T Consensus 88 l~Dt~G~~~~~-------~~~~~~~~~~d~iilV~D~ 117 (217)
T 2f7s_A 88 LWDTAGQERFR-------SLTTAFFRDAMGFLLMFDL 117 (217)
T ss_dssp EEEEESHHHHH-------HHHHHHHTTCCEEEEEEET
T ss_pred EEECCCcHhHH-------hHHHHHhcCCCEEEEEEEC
Confidence 99999953211 1223445677888777766
No 121
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.78 E-value=5.3e-08 Score=87.10 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=51.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+|+|+|++|+|||||++.|++........|..+.......+.+.+.. ..+.++|+||.....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~-- 71 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKR---------------IKLQIWDTAGLERYR-- 71 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGH--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeE---------------EEEEEEECCCchhhc--
Confidence 589999999999999999999875433222222222222334444322 248999999964321
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 72 -----~~~~~~~~~~d~ii~v~d~ 90 (203)
T 1zbd_A 72 -----TITTAYYRGAMGFILMYDI 90 (203)
T ss_dssp -----HHHHTTGGGCSEEEEEEET
T ss_pred -----chHHHhhcCCCEEEEEEEC
Confidence 1223445678888777765
No 122
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.78 E-value=8.9e-09 Score=91.35 Aligned_cols=58 Identities=28% Similarity=0.246 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI--PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~--~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
...+++++|++|+|||||+|.|++... ...+.|++|.......+ ++ .+.++|+||+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~------------------~~~l~Dt~G~~~ 81 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII--ND------------------ELHFVDVPGYGF 81 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE--TT------------------TEEEEECCCBCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE--CC------------------cEEEEECCCCCc
Confidence 357899999999999999999998752 33566666655443322 21 389999999754
No 123
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.78 E-value=3.4e-08 Score=88.59 Aligned_cols=84 Identities=23% Similarity=0.214 Sum_probs=51.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+|+|+|++|+|||||+|.|++........|..+.......+.+++.. ..+.++|++|.....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~~ 88 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKT---------------VKLQIWDTAGQERFR 88 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEE---------------EEEEEECCTTHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCee---------------eEEEEEcCCCcHhHH
Confidence 34689999999999999999999876544444444445555556665532 248999999964321
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. .....++.+|+++.|+|+
T Consensus 89 ~-------~~~~~~~~~d~~i~v~d~ 107 (200)
T 2o52_A 89 S-------VTRSYYRGAAGALLVYDI 107 (200)
T ss_dssp C-------CCHHHHTTCSEEEEEEET
T ss_pred H-------HHHHHhccCCEEEEEEEC
Confidence 1 122445778888887766
No 124
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.77 E-value=9.8e-08 Score=85.02 Aligned_cols=82 Identities=24% Similarity=0.244 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+|+++|++|+|||||++.+++..... .++.++.......+.+++.. ..+.++|++|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~-- 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW-EYDPTLESTYRHQATIDDEV---------------VSMEILDTAGQED-- 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCCCC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCCCCceEEEEEEECCEE---------------EEEEEEECCCCCc--
Confidence 35789999999999999999999875422 22222211222234444332 3488999999754
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.......++.+|+++.|+|+
T Consensus 89 ------~~~~~~~~~~~d~iilv~D~ 108 (196)
T 2atv_A 89 ------TIQREGHMRWGEGFVLVYDI 108 (196)
T ss_dssp ------CHHHHHHHHHCSEEEEEEET
T ss_pred ------ccchhhhhccCCEEEEEEEC
Confidence 11223456788888887766
No 125
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.77 E-value=4.4e-09 Score=106.69 Aligned_cols=89 Identities=33% Similarity=0.427 Sum_probs=58.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
..+++|+|+||||||||+|.|+|.... ++++|++|.++..|.+.++|.. +.++||+|+....
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~-----------------~~l~Dt~G~~~~~ 242 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK-----------------YVFVDTAGLRRKS 242 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE-----------------EEESSCSCC----
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE-----------------EEEEECCCCcccc
Confidence 469999999999999999999998653 5899999999999999998753 7899999985432
Q ss_pred cCC----CCC-cchhhhhHHhhhchhhhhccc
Q 015465 103 HEG----QGL-GNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~----~~l-~~~~l~~l~~ad~ll~vvda~ 129 (406)
... ... .......++.+|+++.++|+.
T Consensus 243 ~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~ 274 (439)
T 1mky_A 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDAT 274 (439)
T ss_dssp -------CCSCCHHHHHHHHHCSEEEEEEETT
T ss_pred ccchhhHHHHHHHHHHHHHhhCCEEEEEEeCC
Confidence 211 111 112234566777777766653
No 126
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.77 E-value=1.6e-07 Score=81.85 Aligned_cols=83 Identities=19% Similarity=0.107 Sum_probs=53.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+++++|++|+|||||++.+++........|..+.......+.+.+.. ..+.++|+||.....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~- 75 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT---------------VKFEIWDTAGQERYH- 75 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEE---------------EEEEEEECCCSGGGG-
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEE---------------EEEEEEeCCCChhhh-
Confidence 3689999999999999999999876543333332323333444454432 248999999954321
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|++++|+|+
T Consensus 76 ------~~~~~~~~~~d~~i~v~d~ 94 (181)
T 2efe_B 76 ------SLAPMYYRGAAAAIIVFDV 94 (181)
T ss_dssp ------GGTHHHHTTCSEEEEEEET
T ss_pred ------hhhHHHhccCCEEEEEEEC
Confidence 1222445678888777765
No 127
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.76 E-value=2.1e-09 Score=101.48 Aligned_cols=86 Identities=26% Similarity=0.384 Sum_probs=62.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+|+|+|.+|+|||||+|.|+|....++++|++|.....|.+...+. .+.++|+||.......
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~-----------------~~~l~DtpG~~~~~~~ 68 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGY-----------------TINLIDLPGTYSLGYS 68 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTE-----------------EEEEEECCCCSSCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCe-----------------EEEEEECCCcCccCCC
Confidence 57999999999999999999998877789999999988888887653 4899999998643221
Q ss_pred C--CCCcchhhhhHHhhhchhhhhcc
Q 015465 105 G--QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~--~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. +.+...++. .+.+|+++.|+|+
T Consensus 69 ~~~e~v~~~~~~-~~~~d~ii~V~D~ 93 (258)
T 3a1s_A 69 SIDEKIARDYLL-KGDADLVILVADS 93 (258)
T ss_dssp SHHHHHHHHHHH-HSCCSEEEEEEET
T ss_pred CHHHHHHHHHHh-hcCCCEEEEEeCC
Confidence 1 001111111 1356777776665
No 128
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.76 E-value=5.6e-08 Score=84.81 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=50.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+++++|++|+|||||++.+++..... +..|+.......+.+++.. ..+.++|++|...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~--- 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQT---------------HLVLIREEAGAPD--- 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEE---------------EEEEEEECSSSCC---
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEE---------------EEEEEEECCCCch---
Confidence 3689999999999999999999875432 2222222223344455432 2478999998543
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
...++.+|+++.|+|+
T Consensus 67 ---------~~~~~~~d~~ilv~D~ 82 (178)
T 2iwr_A 67 ---------AKFSGWADAVIFVFSL 82 (178)
T ss_dssp ---------HHHHHHCSEEEEEEET
T ss_pred ---------hHHHHhCCEEEEEEEC
Confidence 1346778888887776
No 129
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.76 E-value=2.2e-09 Score=101.75 Aligned_cols=87 Identities=26% Similarity=0.413 Sum_probs=63.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++|+|+||||||||+|+|+|.....+++|++|.+...+.+.+.+. .+.++|+||.......
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~DtpG~~~~~~~ 66 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK-----------------EFLVVDLPGIYSLTAH 66 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE-----------------EEEEEECCCCSCCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc-----------------eEEEEeCCCccccccC
Confidence 58999999999999999999999777789999999998898888764 3899999998753221
Q ss_pred CC-C-CcchhhhhHHhhhchhhhhccc
Q 015465 105 GQ-G-LGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 105 ~~-~-l~~~~l~~l~~ad~ll~vvda~ 129 (406)
.. . +...++ ..+.+|+++.|+|+.
T Consensus 67 ~~~~~~~~~~~-~~~~~d~vi~v~D~~ 92 (271)
T 3k53_A 67 SIDELIARNFI-LDGNADVIVDIVDST 92 (271)
T ss_dssp CHHHHHHHHHH-HTTCCSEEEEEEEGG
T ss_pred CHHHHHHHHhh-hccCCcEEEEEecCC
Confidence 10 0 011111 114577777777663
No 130
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.75 E-value=3.3e-09 Score=113.22 Aligned_cols=73 Identities=11% Similarity=0.163 Sum_probs=43.7
Q ss_pred hhhhccc-CCCc--eEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHh----
Q 015465 123 FHVLRAF-EDPD--IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWL---- 195 (406)
Q Consensus 123 l~vvda~-~~~~--il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L---- 195 (406)
+.+++|. .+|+ ++++| ||++.+|+...+.+...+..+ ......+ .-.+|++..+. .||++ ..|
T Consensus 211 v~iArAL~~~p~~~lLlLD---EPtsgLD~~~~~~l~~~l~~l----~~~g~tv-i~vtHd~~~~~-~~d~i-i~l~~g~ 280 (670)
T 3ux8_A 211 IRLATQIGSRLTGVLYVLD---EPSIGLHQRDNDRLIATLKSM----RDLGNTL-IVVEHDEDTML-AADYL-IDIGPGA 280 (670)
T ss_dssp HHHHHHHHTCCCSCEEEEE---CTTTTCCGGGHHHHHHHHHHH----HHTTCEE-EEECCCHHHHH-HCSEE-EEECSSS
T ss_pred HHHHHHHhhCCCCCEEEEE---CCccCCCHHHHHHHHHHHHHH----HHcCCEE-EEEeCCHHHHh-hCCEE-EEecccc
Confidence 3455555 5777 99999 999999988754333322111 1001111 11139988654 59988 566
Q ss_pred --hCCCccccCC
Q 015465 196 --QDGKDVRLGD 205 (406)
Q Consensus 196 --~~g~~~~~~~ 205 (406)
++|+++..++
T Consensus 281 ~~~~G~i~~~g~ 292 (670)
T 3ux8_A 281 GIHGGEVVAAGT 292 (670)
T ss_dssp GGGCCSEEEEEC
T ss_pred cccCCEEEEecC
Confidence 7888876654
No 131
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.75 E-value=8.3e-08 Score=87.58 Aligned_cols=82 Identities=26% Similarity=0.258 Sum_probs=52.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+|+|+|++|+|||||++.|++........|..+.......+.+++.. ..+.++|+||......
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 77 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR---------------IKAQIWDTAGQERYRA- 77 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEE---------------EEEEEECCTTTTTTTC-
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEECCCccchhh-
Confidence 689999999999999999999886554444444444555556666532 2489999999543211
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|++++|+|+
T Consensus 78 ------~~~~~~~~~d~vilV~D~ 95 (223)
T 3cpj_B 78 ------ITSAYYRGAVGALIVYDI 95 (223)
T ss_dssp ------CCGGGTTTCCEEEEEEC-
T ss_pred ------hHHHHhccCCEEEEEEeC
Confidence 112345677877776665
No 132
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.75 E-value=8.6e-10 Score=112.57 Aligned_cols=41 Identities=24% Similarity=0.144 Sum_probs=36.5
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCcee-E-EEcCC
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-R-VNIPD 70 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G-~-i~v~g 70 (406)
..+.+|++++|+||||||||||+++|+|. ..|+.| . |.+++
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl-----------~~p~~G~~pI~vdg 175 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSY-----------ALKFNAYQPLYINL 175 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHHHHHHHT-----------THHHHCCCCEEEEC
T ss_pred eEeCCCCEEEEECCCCCCHHHHHHHHhCc-----------ccccCCceeEEEcC
Confidence 34678999999999999999999999999 678889 7 88876
No 133
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.75 E-value=7.3e-08 Score=84.00 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=52.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
..+++++|++|+|||||++.|++..... ...|.++.......+.+++.. ..+.++|+||.....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~ 74 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK---------------VKLQMWDTAGQERFR 74 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEE---------------EEEEEEECCCC----
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEE---------------EEEEEEeCCCcHHHH
Confidence 4689999999999999999999886533 223333333333444555432 248899999954321
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. .....++.+|+++.|+|+
T Consensus 75 ~-------~~~~~~~~~d~ii~v~d~ 93 (180)
T 2g6b_A 75 S-------VTHAYYRDAHALLLLYDV 93 (180)
T ss_dssp -----------CCGGGCSEEEEEEET
T ss_pred H-------HHHHHccCCCEEEEEEEC
Confidence 1 122345678888887766
No 134
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.74 E-value=1.2e-07 Score=83.19 Aligned_cols=82 Identities=22% Similarity=0.234 Sum_probs=52.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|++|+|||||+|.+++.... ..++.++.......+.+++.. ..+.++|++|......
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~ 81 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSYLKHTEIDNQW---------------AILDVLDTAGQEEFSA 81 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCSCGGGCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceeEEEEEeCCcE---------------EEEEEEECCCchhhHH
Confidence 468999999999999999999976432 233333322223444555432 2367899999543211
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+|+
T Consensus 82 -------~~~~~~~~~d~~i~v~d~ 99 (183)
T 3kkq_A 82 -------MREQYMRTGDGFLIVYSV 99 (183)
T ss_dssp -------SHHHHHHHCSEEEEEEET
T ss_pred -------HHHHHHhcCCEEEEEEEC
Confidence 122446778888887766
No 135
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74 E-value=2.5e-07 Score=82.20 Aligned_cols=81 Identities=20% Similarity=0.087 Sum_probs=50.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA--ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~--~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
..+|+++|++|+|||||+|.|++..... .+.++.| .....+.+.+. ...+.++|+||....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 85 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS--FMTKTVPCGNE---------------LHKFLIWDTAGQERF 85 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEE--EEEEEEECSSS---------------EEEEEEEEECCSGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCccee--EEEEEEEeCCE---------------EEEEEEEcCCCchhh
Confidence 4689999999999999999999875322 2222222 11223333332 135899999995432
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. ......++.+|+++.|+|+
T Consensus 86 ~-------~~~~~~~~~~d~iilV~d~ 105 (192)
T 2fg5_A 86 H-------SLAPMYYRGSAAAVIVYDI 105 (192)
T ss_dssp G-------GGTHHHHTTCSEEEEEEET
T ss_pred H-------hhhHHhhccCCEEEEEEeC
Confidence 1 1223445678888887765
No 136
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.73 E-value=7e-09 Score=88.76 Aligned_cols=88 Identities=26% Similarity=0.317 Sum_probs=54.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
.+++++|++|+|||||++.+++.... ..++|.+|..+....+.+.+. .+.++|+||......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~~~ 64 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG-----------------RFLLVDTGGLWSGDK 64 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE-----------------EEEEEECGGGCSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc-----------------eEEEEECCCCCCccc
Confidence 37899999999999999999998654 467888888888777777654 378999999875332
Q ss_pred CCCCCcchhhhhHHhhhchhhhhccc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
........+...++.+|++++++|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~i~v~d~~ 90 (161)
T 2dyk_A 65 WEKKIQEKVDRALEDAEVVLFAVDGR 90 (161)
T ss_dssp CCHHHHHHHHHHTTTCSEEEEEEESS
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 11111122233456777777777663
No 137
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.73 E-value=9.8e-08 Score=84.57 Aligned_cols=76 Identities=25% Similarity=0.262 Sum_probs=49.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+|+|++|||||||++.+++........| |.......+.+++.. ..+.++|++|....
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~-- 80 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDGQS---------------YLLLIRDEGGPPEL-- 80 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETTEE---------------EEEEEEECSSSCCH--
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECCEE---------------EEEEEEECCCChhh--
Confidence 47999999999999999999887644322111 111112355555542 24788999985321
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
..++.+|+++.|+|+
T Consensus 81 ----------~~~~~~~~~i~v~d~ 95 (184)
T 3ihw_A 81 ----------QFAAWVDAVVFVFSL 95 (184)
T ss_dssp ----------HHHHHCSEEEEEEET
T ss_pred ----------heecCCCEEEEEEEC
Confidence 145678888887765
No 138
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.73 E-value=9.7e-08 Score=84.80 Aligned_cols=83 Identities=23% Similarity=0.223 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+|+++|++|+|||||++.+++.... ..+..|+.......+.+++.. ..+.++|++|.....
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~ 85 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP-TAYVPTVFENFSHVMKYKNEE---------------FILHLWDTAGQEEYD 85 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC-CccCCeeeeeeEEEEEECCEE---------------EEEEEEECCCcHHHH
Confidence 3469999999999999999999987542 223333222222334444432 247899999954321
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. .....++.+|+++.|+|+
T Consensus 86 ~-------~~~~~~~~~d~~i~v~d~ 104 (194)
T 3reg_A 86 R-------LRPLSYADSDVVLLCFAV 104 (194)
T ss_dssp T-------TGGGGCTTCSEEEEEEET
T ss_pred H-------HhHhhccCCcEEEEEEEC
Confidence 1 112345677888777665
No 139
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.72 E-value=7.6e-08 Score=82.75 Aligned_cols=79 Identities=23% Similarity=0.178 Sum_probs=40.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
.+++++|++|+|||||+|.++|..... .+.+++|.. ..+.+++.. ..+.++|++|......
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~---------------~~~~i~D~~g~~~~~~ 64 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEE---------------ASLMVYDIWEQDGGRW 64 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEE---------------EEEEEEECC-------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEE---------------EEEEEEECCCCccchh
Confidence 589999999999999999999875432 344444432 233444432 3478999999654321
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+ ....++.+|+++.|+|+
T Consensus 65 ----~---~~~~~~~~~~~i~v~d~ 82 (166)
T 3q72_A 65 ----L---PGHCMAMGDAYVIVYSV 82 (166)
T ss_dssp ---------------CCEEEEEEET
T ss_pred ----h---hhhhhhhCCEEEEEEEC
Confidence 1 11234667777776655
No 140
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.72 E-value=1.3e-07 Score=84.45 Aligned_cols=84 Identities=24% Similarity=0.257 Sum_probs=51.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+|+|+|++|+|||||++.|++........|..+.......+.+++.. ..+.++|+||....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~- 90 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGER---------------TVLQLWDTAGQERF- 90 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEE---------------EEEEEEECTTCTTC-
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEE---------------EEEEEEECCCCcch-
Confidence 34799999999999999999999875432222222222333445555432 24899999995321
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.......++.+|+++.|+|+
T Consensus 91 ------~~~~~~~~~~~d~iilv~d~ 110 (199)
T 2p5s_A 91 ------RSIAKSYFRKADGVLLLYDV 110 (199)
T ss_dssp ------HHHHHHHHHHCSEEEEEEET
T ss_pred ------hhhHHHHHhhCCEEEEEEEC
Confidence 12233456788888887776
No 141
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.72 E-value=1e-07 Score=81.85 Aligned_cols=83 Identities=22% Similarity=0.138 Sum_probs=50.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+++++|++|+|||||++.|++........|..+.......+.+++.. ..+.++|+||.....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~- 69 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTT---------------VKFEIWDTAGQERYH- 69 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGG-
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCCcHHhh-
Confidence 3689999999999999999999865432211111111122233343321 248899999954321
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 70 ------~~~~~~~~~~d~~i~v~d~ 88 (170)
T 1r2q_A 70 ------SLAPMYYRGAQAAIVVYDI 88 (170)
T ss_dssp ------GGHHHHHTTCSEEEEEEET
T ss_pred ------hhhHHhccCCCEEEEEEEC
Confidence 1223445677888777665
No 142
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.72 E-value=3e-08 Score=88.04 Aligned_cols=85 Identities=20% Similarity=0.196 Sum_probs=52.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
..-.+|+|+|++|+|||||++.|++........|..+.......+.+.+.. ..+.++|++|....
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~ 85 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKR---------------VKLQIWDTAGQERY 85 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTT---------------EEEEEECHHHHHHC
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEE---------------EEEEEEeCCChHHH
Confidence 345799999999999999999999875332222222222233344444332 34899999994321
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. ......++.+|+++.|+|+
T Consensus 86 ~-------~~~~~~~~~~d~~i~v~d~ 105 (191)
T 3dz8_A 86 R-------TITTAYYRGAMGFILMYDI 105 (191)
T ss_dssp H-------HHHHHHHTTCCEEEEEEET
T ss_pred H-------HHHHHHHccCCEEEEEEEC
Confidence 1 1223445677887777665
No 143
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.71 E-value=3.6e-09 Score=108.47 Aligned_cols=92 Identities=27% Similarity=0.226 Sum_probs=48.4
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~ 99 (406)
.+.+.+|+|+|++|||||||+|.|++... .++++|++|.+.....+.++|.+ +.++||||+.
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~-----------------l~liDT~G~~ 292 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTM-----------------FRLTDTAGLR 292 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEE-----------------EEEEC-----
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE-----------------EEEEECCCCC
Confidence 34578899999999999999999999865 45899999999999999888753 8999999986
Q ss_pred ccccCCCCCc-chhhhhHHhhhchhhhhccc
Q 015465 100 RGAHEGQGLG-NSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 100 ~~~~~~~~l~-~~~l~~l~~ad~ll~vvda~ 129 (406)
.........+ ......++.+|++++|+|+.
T Consensus 293 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s 323 (476)
T 3gee_A 293 EAGEEIEHEGIRRSRMKMAEADLILYLLDLG 323 (476)
T ss_dssp ---------------CCCSSCSEEEEEEETT
T ss_pred cchhHHHHHHHHHHHhhcccCCEEEEEEECC
Confidence 5332211111 22345567899999999885
No 144
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.71 E-value=8.5e-08 Score=86.13 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=49.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+|+|+|++|+|||||++.+++........|..+.+.....+.+++.. ..+.++|++|.....
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~-- 92 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR---------------VKLQIWDTAGQERFR-- 92 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEE---------------EEEEEECCTTCGGGH--
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEE---------------EEEEEEECCCcHhHH--
Confidence 689999999999999999999875432222222222333445555432 248999999954321
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 93 -----~~~~~~~~~~d~iilv~D~ 111 (201)
T 2hup_A 93 -----TITQSYYRSANGAILAYDI 111 (201)
T ss_dssp -----HHHHHHHTTCSEEEEEEET
T ss_pred -----HHHHHHHhhCCEEEEEEEC
Confidence 1223445677887777665
No 145
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.71 E-value=1.2e-07 Score=82.14 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=36.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
.+|+++|++|+|||||++.|++..... .+.+++ ......+.+++.. ..+.++|++|...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------------~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGE--DVYERTLTVDGED---------------TTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSS--SEEEEEEEETTEE---------------EEEEEECCC----
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCcccc--ceeEEEEEECCEE---------------EEEEEEecCCCCc
Confidence 589999999999999999999886432 222222 2234455565542 2478999999653
No 146
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.70 E-value=2.4e-07 Score=78.95 Aligned_cols=81 Identities=25% Similarity=0.254 Sum_probs=50.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|||||||++.+++.... ..++.++.......+.+++.. ..+.++|+||.....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~-- 65 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYS-- 65 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCCSSCC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECCEE---------------EEEEEEECCCchhhh--
Confidence 47999999999999999999987432 223333322223334444432 247899999954321
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.++++
T Consensus 66 -----~~~~~~~~~~~~~i~v~d~ 84 (166)
T 2ce2_X 66 -----AMRDQYMRTGEGFLCVFAI 84 (166)
T ss_dssp -----HHHHHHHHHCSEEEEEEET
T ss_pred -----HHHHHhhccCCEEEEEEEC
Confidence 1222345677777776655
No 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.70 E-value=3.2e-09 Score=107.59 Aligned_cols=88 Identities=24% Similarity=0.267 Sum_probs=53.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
.+|+|+|+||+|||||+|.|+|.... +++.|++|++...+.+.+.+. .+.++||+|+.....
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~-----------------~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY-----------------DFNLIDTGGIDIGDE 66 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSS-----------------CCEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCc-----------------eEEEEECCCCCCcch
Confidence 47999999999999999999998765 488999999988888877764 379999999863321
Q ss_pred C-CCCCcchhhhhHHhhhchhhhhccc
Q 015465 104 E-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 104 ~-~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
. ...+.......++.+|++++|+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~ 93 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGR 93 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 0112233445678899999999875
No 148
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.69 E-value=2.9e-07 Score=82.48 Aligned_cols=96 Identities=19% Similarity=0.171 Sum_probs=55.6
Q ss_pred CCCCcCccccccCC-CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCc
Q 015465 10 EAPAERPILGRFSS-HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPA 88 (406)
Q Consensus 10 ~~~~~~~~~g~v~~-g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~ 88 (406)
-+|.++...+.+.. ..+|+++|++|+|||||++.+++...... +..++.......+.+++.. .
T Consensus 10 ~~~~~~~~~~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~---------------~ 73 (201)
T 2gco_A 10 HSSGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIADIEVDGKQ---------------V 73 (201)
T ss_dssp CCTTCCC-----CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEEEEETTEE---------------E
T ss_pred ccCCcccCCCCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEEEEECCEE---------------E
Confidence 34555555555443 36899999999999999999998755332 2222222223345555432 2
Q ss_pred eeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 89 ~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.+.++|+||...... .....++.+|+++.|+|+
T Consensus 74 ~l~i~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~d~ 106 (201)
T 2gco_A 74 ELALWDTAGQEDYDR-------LRPLSYPDTDVILMCFSI 106 (201)
T ss_dssp EEEEECCCCSGGGTT-------TGGGGCTTCSEEEEEEET
T ss_pred EEEEEECCCchhHHH-------HHHHhcCCCCEEEEEEEC
Confidence 478999999543211 111234667777776655
No 149
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.67 E-value=1.3e-07 Score=83.40 Aligned_cols=82 Identities=24% Similarity=0.275 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|.+|||||||++.|++.... ..++.++.......+.+++.. ..+.++|++|......
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~ 84 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYSA 84 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc-cccCCccceEEEEEEEECCEE---------------EEEEEEECCChHHHHH
Confidence 368999999999999999999987432 334444433333445554432 2488999999543211
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+++
T Consensus 85 -------~~~~~~~~~d~~i~v~d~ 102 (190)
T 3con_A 85 -------MRDQYMRTGEGFLCVFAI 102 (190)
T ss_dssp ------------CTTCSEEEEEEET
T ss_pred -------HHHHhhCcCCEEEEEEEC
Confidence 111234567777766655
No 150
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.67 E-value=3e-08 Score=86.98 Aligned_cols=83 Identities=22% Similarity=0.230 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|++|+|||||++.+++........|..+.+.....+.+++.. ..+.++|++|......
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~ 72 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFRT 72 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEE---------------EEEEEEEC--------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEcCCCChhhhh
Confidence 3689999999999999999999774433323333333334455555532 2489999999643221
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|++++|+|+
T Consensus 73 -------~~~~~~~~~d~~i~v~d~ 90 (183)
T 2fu5_C 73 -------ITTAYYRGAMGIMLVYDI 90 (183)
T ss_dssp --------CCTTTTTCSEEEEEEET
T ss_pred -------hHHHHHhcCCEEEEEEEC
Confidence 112335678888887766
No 151
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.66 E-value=2.8e-07 Score=82.17 Aligned_cols=84 Identities=19% Similarity=0.149 Sum_probs=51.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
....+|+++|++|+|||||++.+++... ...++.|+.......+.+++.. ..+.++|++|....
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~ 81 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRP---------------VRLQLCDTAGQDEF 81 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEE---------------EEEEEEECCCSTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEECCEE---------------EEEEEEECCCCHHH
Confidence 4467999999999999999999998752 2445555544444455555532 24789999997543
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.. + ....++.+|+++.|+|+
T Consensus 82 ~~----~---~~~~~~~~~~~i~v~d~ 101 (201)
T 2q3h_A 82 DK----L---RPLCYTNTDIFLLCFSV 101 (201)
T ss_dssp SS----S---GGGGGTTCSEEEEEEET
T ss_pred HH----H---hHhhcCCCcEEEEEEEC
Confidence 21 1 11345677888777765
No 152
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.65 E-value=2e-08 Score=94.09 Aligned_cols=88 Identities=16% Similarity=0.104 Sum_probs=59.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCc-cccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPF-CTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~-~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
..+|+|+|++|||||||+|.|+|..... +..|. +|.....+.+.+.+. .+.++||||+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~i~iiDTpG~~~~ 84 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR-----------------EIVIIDTPDMFSW 84 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE-----------------EEEEEECCGGGGS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC-----------------EEEEEECcCCCCC
Confidence 4689999999999999999999987544 33344 677777777777654 4899999998764
Q ss_pred ccCCCCC----cchhhhhHHhhhchhhhhcc
Q 015465 102 AHEGQGL----GNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 102 ~~~~~~l----~~~~l~~l~~ad~ll~vvda 128 (406)
....... ...+...++.+|++++|+|+
T Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~ 115 (260)
T 2xtp_A 85 KDHCEALYKEVQRCYLLSAPGPHVLLLVTQL 115 (260)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCCSEEEEEEET
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcEEEEEEeC
Confidence 4321111 11112234556777776665
No 153
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.64 E-value=2.8e-08 Score=88.72 Aligned_cols=61 Identities=26% Similarity=0.370 Sum_probs=48.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
.+++|+|+||||||||++.++|........|..+.++..|.+.++|..+ .+.++|++|...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~---------------~~~i~Dt~g~~~ 90 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI---------------KAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE---------------EEEEEEECSCCS
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE---------------EEEEEECCCCcc
Confidence 5899999999999999999999876555556556667889999887642 356799998643
No 154
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.64 E-value=4.5e-07 Score=80.28 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+|+++|++|+|||||++.+++.... ..++.|+.......+.+++.. ..+.++|++|.....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~ 83 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI-SEYDPNLEDTYSSEETVDHQP---------------VHLRVMDTADLDTPR 83 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC---CC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceeeEEEEECCEE---------------EEEEEEECCCCCcch
Confidence 3479999999999999999999987532 333333322112233444332 247899999965322
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. + ...++.+|+++.|+|+
T Consensus 84 ~----~----~~~~~~~~~~ilv~d~ 101 (187)
T 3c5c_A 84 N----C----ERYLNWAHAFLVVYSV 101 (187)
T ss_dssp C----T----HHHHTTCSEEEEEEET
T ss_pred h----H----HHHHhhCCEEEEEEEC
Confidence 1 1 2345667777776655
No 155
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.63 E-value=5.6e-09 Score=92.09 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=23.2
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHH
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLT 45 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Lt 45 (406)
.+++|+.++|+||||||||||++++.
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 57789999999999999999999543
No 156
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.63 E-value=2.9e-08 Score=88.95 Aligned_cols=60 Identities=23% Similarity=0.309 Sum_probs=46.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~ 99 (406)
.+++|+|+||||||||++.|+|........|..+.++..|.+.++|.. ..+.++|++|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~---------------~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT---------------IKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE---------------EEEEEEECSSGG
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCch
Confidence 589999999999999999999986655444555566778899988753 246789999854
No 157
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.62 E-value=3.2e-08 Score=86.17 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=61.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
....+|+++|++|||||||++.|++........|.+|.......+.+++. .+.++|+||....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~ 68 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK-----------------KITFLDTPGHEAF 68 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE-----------------EEEESCCCSSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc-----------------eEEEEECCCCHHH
Confidence 34679999999999999999999998776667777777777777777664 3789999996533
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
... ....++.+|+++.|+|+
T Consensus 69 ~~~-------~~~~~~~~d~~i~v~d~ 88 (178)
T 2lkc_A 69 TTM-------RARGAQVTDIVILVVAA 88 (178)
T ss_dssp SCS-------CCSSCCCCCEEEEEEET
T ss_pred HHH-------HHHHHhhCCEEEEEEEC
Confidence 221 11334567777777765
No 158
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.60 E-value=7.3e-07 Score=78.43 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=48.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|+|||||++.+++..... .+..++.......+.+++.. ..+.++|++|......
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 70 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQR---------------IELSLWDTSGSPYYDN- 70 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEECSSCE---------------EEEEEEEECCSGGGTT-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEECCEE---------------EEEEEEECCCChhhhh-
Confidence 589999999999999999999875422 22222111112233444322 3488999999643211
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+ ....++.+|+++.|+|+
T Consensus 71 ---~---~~~~~~~~~~~i~v~d~ 88 (184)
T 1m7b_A 71 ---V---RPLSYPDSDAVLICFDI 88 (184)
T ss_dssp ---T---GGGGCTTCSEEEEEEET
T ss_pred ---h---HHhhcCCCcEEEEEEEC
Confidence 1 11234667777776655
No 159
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.60 E-value=6.6e-09 Score=106.08 Aligned_cols=92 Identities=23% Similarity=0.324 Sum_probs=61.0
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~ 99 (406)
.+.|.+|+|+|++|||||||+|.|++.... ++++|++|.+.....+.++|.+ +.++||||+.
T Consensus 221 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~-----------------v~liDT~G~~ 283 (462)
T 3geh_A 221 LRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP-----------------VQVLDTAGIR 283 (462)
T ss_dssp HHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE-----------------EEECC-----
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE-----------------EEEEECCccc
Confidence 346789999999999999999999997554 5788999999888888887753 7999999986
Q ss_pred ccccCCCCC-cchhhhhHHhhhchhhhhccc
Q 015465 100 RGAHEGQGL-GNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 100 ~~~~~~~~l-~~~~l~~l~~ad~ll~vvda~ 129 (406)
......+.. ..+....++.+|++++|+|+.
T Consensus 284 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s 314 (462)
T 3geh_A 284 ETSDQVEKIGVERSRQAANTADLVLLTIDAA 314 (462)
T ss_dssp ---------------CCCCSCSEEEEEEETT
T ss_pred cchhHHHHHHHHHHhhhhhcCCEEEEEeccC
Confidence 432221111 122334567788888888874
No 160
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.59 E-value=7e-09 Score=105.69 Aligned_cols=88 Identities=24% Similarity=0.267 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
.+|+|+|++|+|||||+|.|+|.... +.+.|++|.+...+.+...+. .+.++||+|+.....
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~-----------------~~~liDT~G~~~~~~ 86 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY-----------------DFNLIDTGGIDIGDE 86 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSS-----------------CCEEECCCC------
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCc-----------------eEEEEECCCCCCcch
Confidence 58999999999999999999998764 478899999888888776654 389999999873221
Q ss_pred C-CCCCcchhhhhHHhhhchhhhhccc
Q 015465 104 E-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 104 ~-~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
. ...+.......++.+|++++|+|+.
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~ 113 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGR 113 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESS
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCC
Confidence 1 1112223345568899999999874
No 161
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.59 E-value=4.7e-08 Score=92.06 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=51.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
..+|+++|.+|+|||||+|+|+|... ..++++++|..+....+.+.+. .+.++||||+....
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~l~liDTpG~~~~~ 98 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF-----------------TINIIDTPGLVEAG 98 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE-----------------EEEEEECCCSEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe-----------------eEEEEECCCCCCcc
Confidence 46899999999999999999999876 4578899999988888887764 38999999987643
No 162
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.59 E-value=3.2e-08 Score=87.19 Aligned_cols=60 Identities=35% Similarity=0.543 Sum_probs=51.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
.+++|+|++|||||||+|.|++.....+.+|++|..+..+.+.+.+. .+.++|+||....
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE-----------------KFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTE-----------------EEEEEECCCCSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCc-----------------EEEEEECCCcCcc
Confidence 58999999999999999999997666678898898888888887654 3899999997643
No 163
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.59 E-value=8.1e-08 Score=85.75 Aligned_cols=85 Identities=26% Similarity=0.273 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccc-cCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCT-IEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T-~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
..+|+++|++|+|||||++.|++..... ..++.|+ .+.....+.+++.. ....+.++|++|....
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~~~ 86 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT-------------VSVELFLLDTAGSDLY 86 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSS-------------EEEEEEEEETTTTHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc-------------cEEEEEEEECCCcHHH
Confidence 4699999999999999999999873222 2333333 24455566666530 0124899999997532
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.. .....++.+|++++|+|+
T Consensus 87 ~~-------~~~~~~~~~d~~i~v~d~ 106 (208)
T 2yc2_C 87 KE-------QISQYWNGVYYAILVFDV 106 (208)
T ss_dssp HH-------HHSTTCCCCCEEEEEEET
T ss_pred HH-------HHHHHHhhCcEEEEEEEC
Confidence 11 122334567777776665
No 164
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.58 E-value=8e-09 Score=113.39 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=46.2
Q ss_pred hhccc-CCCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhhCCCcc-c
Q 015465 125 VLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-R 202 (406)
Q Consensus 125 vvda~-~~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L~~g~~~-~ 202 (406)
+++++ .+|+++++| ||++.+|....+..... +......+ .-.+|+...+..+|+++ .+|++|+++ +
T Consensus 559 LArAL~~~P~lLLLD---EPTs~LD~~~~~~l~~~-------L~~~g~tv-IivSHdl~~l~~~adri-i~L~~G~iv~~ 626 (986)
T 2iw3_A 559 LARAVLRNADILLLD---EPTNHLDTVNVAWLVNY-------LNTCGITS-ITISHDSVFLDNVCEYI-INYEGLKLRKY 626 (986)
T ss_dssp HHHHHHTTCSEEEEE---STTTTCCHHHHHHHHHH-------HHHSCSEE-EEECSCHHHHHHHCSEE-EEEETTEEEEE
T ss_pred HHHHHhcCCCEEEEE---CCccCCCHHHHHHHHHH-------HHhCCCEE-EEEECCHHHHHHhCCEE-EEEECCeeecC
Confidence 33443 599999999 99999999885333221 11100011 01139999999999998 788999875 4
Q ss_pred cCCC
Q 015465 203 LGDW 206 (406)
Q Consensus 203 ~~~~ 206 (406)
.|+.
T Consensus 627 ~G~~ 630 (986)
T 2iw3_A 627 KGNF 630 (986)
T ss_dssp ESCH
T ss_pred CCCH
Confidence 5543
No 165
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.58 E-value=7.8e-07 Score=78.76 Aligned_cols=81 Identities=20% Similarity=0.185 Sum_probs=53.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+|+++|++|+|||||++.+++... ...++.|+.......+.+++.. ..+.++|++|......
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~~- 81 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQ---------------YLLGLYDTAGQEDYDR- 81 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSSCE---------------EEEEEECCCCSSSSTT-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECCEE---------------EEEEEEECCCCcchhH-
Confidence 5899999999999999999998743 2344444444444455555532 2478999999654321
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+|+
T Consensus 82 ------~~~~~~~~~d~~i~v~d~ 99 (194)
T 2atx_A 82 ------LRPLSYPMTDVFLICFSV 99 (194)
T ss_dssp ------TGGGGCTTCSEEEEEEET
T ss_pred ------HHHHhcCCCCEEEEEEEC
Confidence 112335677888777665
No 166
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.58 E-value=1.6e-08 Score=88.42 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=37.3
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
.+.+|++++|+||||||||||+++|+|. . |++|.|.++|..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~-----------l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQG-----------I-GHQGNVKSPTYTL 70 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHH-----------T-TCCSCCCCCTTTC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHh-----------C-CCCCeEEECCEee
Confidence 4688999999999999999999999998 6 8889988887653
No 167
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.57 E-value=6.9e-07 Score=80.33 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|++|+|||||++.|++..... .+..++.......+.+++.. ..+.++|+||......
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 88 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDGKQ---------------VELALWDTAGQEDYDR 88 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEE---------------EEEEEEECTTCTTCTT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECCEE---------------EEEEEEECCCcHHHHH
Confidence 4589999999999999999999875432 22222222222334444432 2488999999643221
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+|+
T Consensus 89 -------~~~~~~~~~d~~i~v~d~ 106 (207)
T 2fv8_A 89 -------LRPLSYPDTDVILMCFSV 106 (207)
T ss_dssp -------TGGGGCTTCCEEEEEEET
T ss_pred -------HHHhhcCCCCEEEEEEEC
Confidence 112334667777776665
No 168
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.57 E-value=3.8e-08 Score=90.25 Aligned_cols=89 Identities=20% Similarity=0.304 Sum_probs=56.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+|+|++|+|||||+|.|++......++|++|.....+.+.+.+. .+.++|+||......
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~DtpG~~~~~~ 91 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLN-----------------KYQIIDTPGLLDRAF 91 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTE-----------------EEEEEECTTTTTSCG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCC-----------------eEEEEECCCCcCccc
Confidence 579999999999999999999998766677888888877777665543 489999999864322
Q ss_pred CCCC-C-cchhhhhHHhhhchhhhhccc
Q 015465 104 EGQG-L-GNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 104 ~~~~-l-~~~~l~~l~~ad~ll~vvda~ 129 (406)
.... + ...+....+.+|++++|+|+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 119 (228)
T 2qu8_A 92 ENRNTIEMTTITALAHINGVILFIIDIS 119 (228)
T ss_dssp GGCCHHHHHHHHHHHTSSEEEEEEEETT
T ss_pred chhhhHHHHHHHHhhccccEEEEEEecc
Confidence 1110 0 001111234556777766663
No 169
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.56 E-value=9.3e-07 Score=79.82 Aligned_cols=82 Identities=22% Similarity=0.278 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|++|+|||||++.+++..... .+..|+.......+.+++.. ..+.++|++|......
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~ 91 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQR---------------IELSLWDTSGSPYYDN 91 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEESSSSE---------------EEEEEEEECCSGGGTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEECCEE---------------EEEEEEeCCCcHhhhH
Confidence 3689999999999999999999875432 22222111112233444322 3489999999643211
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+. ...++.+|+++.|+|+
T Consensus 92 ----~~---~~~~~~~d~~ilv~D~ 109 (205)
T 1gwn_A 92 ----VR---PLSYPDSDAVLICFDI 109 (205)
T ss_dssp ----TG---GGGCTTCSEEEEEEET
T ss_pred ----HH---HhhccCCCEEEEEEEC
Confidence 11 1234667777776665
No 170
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.56 E-value=5.4e-08 Score=95.10 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=37.8
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcc
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (406)
.+.+|+.++|+|+||||||||+++|+|. +.|+.|.|.++|.+
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~-----------~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEF-----------IPKEERIISIEDTE 208 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGG-----------SCTTSCEEEEESSC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCCcEEEECCee
Confidence 3567999999999999999999999999 77899999998864
No 171
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.55 E-value=1.7e-08 Score=100.10 Aligned_cols=84 Identities=24% Similarity=0.267 Sum_probs=56.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC------CCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeec
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL------AIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~------~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~ 96 (406)
.+..++++|.+|+|||||+|+|+|. ...++++|+||..+..+. +.+ .+.++|||
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~~------------------~~~liDtP 220 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--LES------------------GATLYDTP 220 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--CST------------------TCEEEECC
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--eCC------------------CeEEEeCC
Confidence 3568999999999999999999987 345589999998765433 321 27899999
Q ss_pred cccccccCCCCCcchhhhhH---Hhhhchhhhh
Q 015465 97 GLVRGAHEGQGLGNSFLSHI---RAVDGIFHVL 126 (406)
Q Consensus 97 gl~~~~~~~~~l~~~~l~~l---~~ad~ll~vv 126 (406)
|+.........+....+..+ +..+.+++++
T Consensus 221 G~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l 253 (369)
T 3ec1_A 221 GIINHHQMAHFVDARDLKIITPKREIHPRVYQL 253 (369)
T ss_dssp SCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEE
T ss_pred CcCcHHHHHHHHhHHHHHHHhcccccCceEEEE
Confidence 99765432333333433333 3344444444
No 172
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.54 E-value=7.2e-08 Score=93.07 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=38.3
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
.-.+.+|++++|+||||||||||++.|+|. ..|+.|.|.+.|.+.
T Consensus 94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag~-----------l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHR-----------LKNEGTKVLMAAGDT 138 (302)
T ss_dssp CCCSSSCEEEEEECCTTSCHHHHHHHHHHH-----------HHHTTCCEEEECCCC
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHH-----------HHHcCCeEEEEeecc
Confidence 334778999999999999999999999998 667888888877553
No 173
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.52 E-value=6.1e-07 Score=81.28 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=43.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|++|+|||||++.+++.... ..++.++.......+.+++.. ..+.++|++|......
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~~~ 97 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKP---------------VHLHIWDTAGQDDYDR 97 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEE---------------EEEEEEEC--------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCEE---------------EEEEEEECCCchhhhH
Confidence 368999999999999999999986432 223333322233344555432 2488999999543221
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+|+
T Consensus 98 -------~~~~~~~~~d~~i~v~d~ 115 (214)
T 2j1l_A 98 -------LRPLFYPDASVLLLCFDV 115 (214)
T ss_dssp --------------CEEEEEEEEET
T ss_pred -------HHHHHhccCCEEEEEEEC
Confidence 111235677888877765
No 174
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.52 E-value=7.3e-07 Score=78.56 Aligned_cols=90 Identities=19% Similarity=0.076 Sum_probs=49.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC----ccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP----FCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p----~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~ 99 (406)
..+|+++|++|+|||||++.+.|......... .+...|+.|.-... .. +..-......+.++|++|..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~-------~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLP-LD-------IGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECC-SS-------CCCSSSCEEEEEEEECCSCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecc-cc-------cccccCCceEEEEEeCCChH
Confidence 36899999999999999999998743221000 00112333321110 00 00000112358899999954
Q ss_pred ccccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 100 RGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 100 ~~~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
... ......++.+|+++.|+|+
T Consensus 86 ~~~-------~~~~~~~~~~d~~i~v~D~ 107 (198)
T 3t1o_A 86 FYN-------ASRKLILRGVDGIVFVADS 107 (198)
T ss_dssp SCS-------HHHHHHTTTCCEEEEEEEC
T ss_pred HHH-------HHHHHHHhcCCEEEEEEEC
Confidence 321 1222345778888887776
No 175
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.52 E-value=2.8e-08 Score=97.39 Aligned_cols=42 Identities=29% Similarity=0.521 Sum_probs=33.7
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCc
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~ 71 (406)
..+.+|.+++|+|+||||||||+|+|+|. ..|+.|.+.+.+.
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~-----------~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSL-----------LTAAGHKVAVLAV 91 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHH-----------HHHTTCCEEEEEE
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHh-----------hhhCCCEEEEEEE
Confidence 34678999999999999999999999987 4555666655443
No 176
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.50 E-value=1.3e-07 Score=81.14 Aligned_cols=82 Identities=23% Similarity=0.228 Sum_probs=53.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
.+++++|++|+|||||++.+++........|..+.......+.+++.. ..+.++|+||.....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~-- 66 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT---------------VKFEIWDTAGQERFA-- 66 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGG--
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCChhhh--
Confidence 579999999999999999999876543333333333334455555432 248999999954221
Q ss_pred CCCCcchhhhhHHhhhchhhhhcc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 67 -----~~~~~~~~~~d~~i~v~d~ 85 (170)
T 1ek0_A 67 -----SLAPXYYRNAQAALVVYDV 85 (170)
T ss_dssp -----GGHHHHHTTCSEEEEEEET
T ss_pred -----hhhhhhhccCcEEEEEEec
Confidence 1223445778888777766
No 177
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.50 E-value=7.3e-08 Score=92.12 Aligned_cols=60 Identities=35% Similarity=0.465 Sum_probs=37.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
..+..++++|.||+|||||+|+|+|... .+++.|++|..+.. +.+. ..+.++||||+..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~------------------~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKVG------------------KELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEET------------------TTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEeC------------------CCEEEEECcCcCC
Confidence 3457899999999999999999999874 56899999987752 3332 1389999999975
Q ss_pred c
Q 015465 101 G 101 (406)
Q Consensus 101 ~ 101 (406)
.
T Consensus 178 ~ 178 (282)
T 1puj_A 178 P 178 (282)
T ss_dssp S
T ss_pred C
Confidence 4
No 178
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.49 E-value=1.8e-07 Score=92.34 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=38.7
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
..-.+.+|++++|+|+||||||||++.|+|. ..|+.|.|.+.+.++
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~-----------l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR-----------LKNEGTKVLMAAGDT 195 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHHH-----------HHHTTCCEEEECCCC
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHhh-----------ccccCCEEEEecccc
Confidence 3335778999999999999999999999998 667888888877653
No 179
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.49 E-value=1.5e-07 Score=84.51 Aligned_cols=85 Identities=25% Similarity=0.240 Sum_probs=59.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
....+|+|+|++|+|||||++.|++........|..+.......+.+++.. ..+.++|+||....
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 82 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK---------------VKLQLWDTAGQERF 82 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEE---------------EEEEEECCTTGGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEE---------------EEEEEEeCCCcHHH
Confidence 345799999999999999999999886655555555555555666666532 24899999995432
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.. .....++.+|++++|+|+
T Consensus 83 ~~-------~~~~~~~~~d~ii~v~d~ 102 (213)
T 3cph_A 83 RT-------ITTAYYRGAMGIILVYDV 102 (213)
T ss_dssp TC-------CCHHHHTTCSEEEEEEET
T ss_pred HH-------HHHHHhccCCEEEEEEEC
Confidence 21 123456778888887766
No 180
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.48 E-value=1.7e-06 Score=78.43 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=50.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+|.|+|++|+|||||++.+++.... ..+..|+.......+.+++.. ..+.++|++|.....
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~ 89 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQR---------------VELSLWDTSGSPYYD 89 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--CE---------------EEEEEEEECCSGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCEE---------------EEEEEEECCCCHhHH
Confidence 3579999999999999999999987543 222222211122233444332 348899999964322
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. + ....++.+|+++.|+|+
T Consensus 90 ~----~---~~~~~~~~d~~i~v~d~ 108 (214)
T 3q3j_B 90 N----V---RPLCYSDSDAVLLCFDI 108 (214)
T ss_dssp T----T---GGGGCTTCSEEEEEEET
T ss_pred H----H---HHHHcCCCeEEEEEEEC
Confidence 1 1 11335678888887776
No 181
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.47 E-value=1.5e-06 Score=77.46 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=48.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
.+|+|||.+|+|||||+|.++|..... ..++.++.......+.++|.. ..+.++|++|.....
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~Dt~~~~~~~- 70 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGES---------------ATIILLDMWENKGEN- 70 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEE---------------EEEEEECCCCC-----
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeE---------------EEEEEEEeccCcchh-
Confidence 589999999999999999999754322 344444444444556666643 246789998754311
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
..+. ....+.+|+++.|.+.
T Consensus 71 --~~~~---~~~~~~~~~~i~v~dv 90 (192)
T 2cjw_A 71 --EWLH---DHCMQVGDAYLIVYSI 90 (192)
T ss_dssp --CTTG---GGHHHHCSEEEEEEET
T ss_pred --hhHH---HhhcccCCEEEEEEEC
Confidence 1111 1234556666665444
No 182
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.47 E-value=1.6e-07 Score=88.77 Aligned_cols=61 Identities=26% Similarity=0.306 Sum_probs=49.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
..+++++|.+|+|||||+|.|+|... .+++++.+|..+....+...+. .+.++||||+...
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~l~iiDTpG~~~~ 100 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF-----------------TLNIIDTPGLIEG 100 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTE-----------------EEEEEECCCSEET
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCe-----------------EEEEEECCCCCCC
Confidence 46899999999999999999999875 4477888888777666655543 4899999998754
No 183
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.45 E-value=1.1e-06 Score=80.07 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=40.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~ 99 (406)
.+|+|||.+|+|||||+|.++|..... ..+|.++.......+.++|.. ..+.++|++|..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~---------------~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES---------------ATIILLDMWENK 98 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEE---------------EEEEEECCTTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCee---------------eEEEEeecCCCc
Confidence 589999999999999999999865432 334444333334556666543 246789998743
No 184
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.44 E-value=2.4e-07 Score=81.93 Aligned_cols=82 Identities=22% Similarity=0.284 Sum_probs=54.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
....+|+++|++|+|||||+|.|++.......+ ..|+......+.+++. .+.++|++|....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~ 80 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI-LPTIGFSIEKFKSSSL-----------------SFTVFDMSGQGRY 80 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC-CCCSSEEEEEEECSSC-----------------EEEEEEECCSTTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc-CCccceeEEEEEECCE-----------------EEEEEECCCCHHH
Confidence 345799999999999999999999875222222 2344455556666543 4899999995432
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. ......++.+|++++|+|+
T Consensus 81 ~-------~~~~~~~~~~d~ii~v~d~ 100 (190)
T 2h57_A 81 R-------NLWEHYYKEGQAIIFVIDS 100 (190)
T ss_dssp G-------GGGGGGGGGCSEEEEEEET
T ss_pred H-------HHHHHHHhcCCEEEEEEEC
Confidence 1 1223445778888887776
No 185
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.43 E-value=1.8e-07 Score=90.25 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=62.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
+.+++|+|++|+|||||+|.+++.... .++++++|+....+.+.+.+. ..+.++|+||.....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~----------------~~l~i~Dt~G~~~~~ 66 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN----------------MTLNLWDCGGQDVFM 66 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTT----------------EEEEEEEECCSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCc----------------eEEEEEECCCcHHHh
Confidence 468999999999999999999887543 367899999999888877442 248999999965321
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
... ........++.+|+++.|+|+.
T Consensus 67 ~~~--~~~~~~~~~~~ad~vi~V~D~t 91 (307)
T 3r7w_A 67 ENY--FTKQKDHIFQMVQVLIHVFDVE 91 (307)
T ss_dssp HHH--HTTTHHHHHTTCSEEEEEEETT
T ss_pred hhh--hhhHHHHHhccCCEEEEEEECC
Confidence 000 0011223456788888888774
No 186
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.43 E-value=4.8e-07 Score=81.80 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=47.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+|+|++|||||||+|.|++...... +.. |.........+... ......+.++|++|......
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~-t~~~~~~~~~~~~~------------~~~~~~~~l~Dt~G~~~~~~ 76 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKN-YNA-TVGAVNHPVTFLDD------------QGNVIKFNVWDTAGQEKKAV 76 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCE-EET-TTTEEEEEEEEEBT------------TSCEEEEEEEEECSGGGTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCC-CCC-ccceeeEEEEEEeC------------CCcEEEEEEEecCCchhhch
Confidence 46899999999999999999997643211 111 11111111111100 00012488999999653221
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+ ....++.+|+++.|+|+
T Consensus 77 ----~---~~~~~~~~d~~i~v~d~ 94 (218)
T 4djt_A 77 ----L---KDVYYIGASGAILFFDV 94 (218)
T ss_dssp ----C---CHHHHTTCSEEEEEEET
T ss_pred ----H---HHHHhhcCCEEEEEEeC
Confidence 1 12345678888887766
No 187
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.42 E-value=2.2e-07 Score=79.83 Aligned_cols=83 Identities=22% Similarity=0.155 Sum_probs=50.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+++++|++|+|||||+|.+++........|..........+.+.+. ...+.++|+||.....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~Dt~G~~~~~- 69 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNE---------------LHKFLIWDTAGLERFR- 69 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCSGGGG-
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCe---------------EEEEEEEcCCCchhhh-
Confidence 468999999999999999999988543221111111111222333332 1348899999974321
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 70 ------~~~~~~~~~~~~~i~v~d~ 88 (170)
T 1z0j_A 70 ------ALAPMYYRGSAAAIIVYDI 88 (170)
T ss_dssp ------GGTHHHHTTCSEEEEEEET
T ss_pred ------cccHhhCcCCCEEEEEEEC
Confidence 1222445677887777665
No 188
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.41 E-value=2.6e-06 Score=81.81 Aligned_cols=85 Identities=20% Similarity=0.152 Sum_probs=55.6
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
.....+++++|.+|+|||||++.+++... ...++.+|.......+.+++.. ..+.++|++|...
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGLED 215 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCCGG
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEE---------------EEEEEEeCCCchh
Confidence 34567999999999999999999997643 2344444444444445555432 2467999999654
Q ss_pred cccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 101 ~~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
... .....++.+|+++.|+|+
T Consensus 216 ~~~-------~~~~~~~~~d~~i~v~d~ 236 (332)
T 2wkq_A 216 YDR-------LRPLSYPQTDVFLICFSL 236 (332)
T ss_dssp GTT-------TGGGGCTTCSEEEEEEET
T ss_pred hhH-------HHHHhccCCCEEEEEEeC
Confidence 321 112345678888887766
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.40 E-value=3.5e-07 Score=88.09 Aligned_cols=65 Identities=25% Similarity=0.333 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhh----hhhccCCC-CcCceeEEEeecccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKS-AVPAFLEIHDIAGLV 99 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~~~~~p~~-~~~~~i~lvD~~gl~ 99 (406)
..++|+|+||||||||+|+|.|.. ..|.+| +.+.|.++... ...+.++. .....++++|++|+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~----------~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTD----------LYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-----------------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC----------ccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 678999999999999999999863 234444 33333222110 01222332 334568999999985
Q ss_pred c
Q 015465 100 R 100 (406)
Q Consensus 100 ~ 100 (406)
.
T Consensus 88 ~ 88 (301)
T 2qnr_A 88 D 88 (301)
T ss_dssp -
T ss_pred h
Confidence 4
No 190
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.40 E-value=2.7e-07 Score=82.67 Aligned_cols=79 Identities=22% Similarity=0.383 Sum_probs=52.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+++++|++|||||||++.+++.... .+ ..|+.++.+.+.+++. .+.++|+||......
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~--~~-~~t~~~~~~~~~~~~~-----------------~l~i~Dt~G~~~~~~ 84 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLG--QH-VPTLHPTSEELTIAGM-----------------TFTTFDLGGHIQARR 84 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTE-----------------EEEEEEECC----CC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC--cc-CCCCCceeEEEEECCE-----------------EEEEEECCCcHhhHH
Confidence 458999999999999999999987542 12 2356667777877753 389999999643221
Q ss_pred CCCCCcchhhhhHHhhhchhhhhccc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
.....++.+|+++.|+|+.
T Consensus 85 -------~~~~~~~~~d~~i~v~D~~ 103 (198)
T 1f6b_A 85 -------VWKNYLPAINGIVFLVDCA 103 (198)
T ss_dssp -------GGGGGGGGCSEEEEEEETT
T ss_pred -------HHHHHHhcCCEEEEEEECC
Confidence 1223456788888887763
No 191
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.39 E-value=2.5e-07 Score=90.24 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=50.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+|+|+|.+|+|||||++.|++.... ..+| |+......+...+ ..+.++||||.....
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~-~~~p--T~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR 223 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE-EEEE--ETTEEEEEEEETT-----------------EEEEEEECC-----C
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC-Cccc--ccceEEEEEecCc-----------------EEEEEEECCCCHhHH
Confidence 3458999999999999999999987531 2222 4444444444433 248999999943221
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
......++.+|+++.|+|+.
T Consensus 224 -------~~~~~~~~~ad~vilV~D~~ 243 (329)
T 3o47_A 224 -------PLWRHYFQNTQGLIFVVDSN 243 (329)
T ss_dssp -------CSHHHHHTTEEEEEEEEETT
T ss_pred -------HHHHHHhccCCEEEEEEECC
Confidence 12234467889998888874
No 192
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.39 E-value=6.1e-07 Score=92.04 Aligned_cols=83 Identities=20% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCC-------------------------------CCCCccccCCceeEEEcCCc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-------------------------------ENFPFCTIEPNEARVNIPDE 71 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~-------------------------------~~~p~~T~~p~~G~i~v~g~ 71 (406)
+..+++++|.+|+|||||++.|++....+ ...++.|++.....+...+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~- 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC-
Confidence 45799999999999999999997652111 1122333333333332222
Q ss_pred chhhhhhhccCCCCcCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 72 RFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 72 ~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
..+.++|+||... +...+...++.+|+++.|+|+.
T Consensus 111 ----------------~~~~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~ 145 (483)
T 3p26_A 111 ----------------ANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCS 145 (483)
T ss_dssp ----------------CEEEEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECC
T ss_pred ----------------ceEEEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECC
Confidence 3589999999743 2334456678899999998885
No 193
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.39 E-value=3.7e-07 Score=81.14 Aligned_cols=80 Identities=25% Similarity=0.388 Sum_probs=55.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
+..+++++|++|||||||++.+++.... .+ ..|+.++.+.+.+++. .+.++|+||.....
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~-----------------~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGNI-----------------KFTTFDLGGHIQAR 81 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETTE-----------------EEEEEECCCSGGGT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECCE-----------------EEEEEECCCCHHHH
Confidence 3468999999999999999999987542 12 2456667777877753 38999999975432
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
. + ....++.+|+++.|+|+.
T Consensus 82 ~----~---~~~~~~~~d~~i~v~d~~ 101 (190)
T 1m2o_B 82 R----L---WKDYFPEVNGIVFLVDAA 101 (190)
T ss_dssp T----S---GGGGCTTCCEEEEEEETT
T ss_pred H----H---HHHHHhcCCEEEEEEECC
Confidence 1 1 123346788888877763
No 194
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.39 E-value=1.3e-07 Score=100.86 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=40.2
Q ss_pred CceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHh------hCCCccccCC
Q 015465 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWL------QDGKDVRLGD 205 (406)
Q Consensus 132 ~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~v~~l~~~i~~~L------~~g~~~~~~~ 205 (406)
|+++++| ||++.+|+.....+...+.. +..-...+ .-.+|++..+ ..||++ .+| .+|+++..|+
T Consensus 565 p~llllD---EPt~~LD~~~~~~i~~~l~~----l~~~g~tv-i~vtHd~~~~-~~~d~i-~~l~~~~g~~~G~i~~~g~ 634 (670)
T 3ux8_A 565 RTLYILD---EPTTGLHVDDIARLLDVLHR----LVDNGDTV-LVIEHNLDVI-KTADYI-IDLGPEGGDRGGQIVAVGT 634 (670)
T ss_dssp CEEEEEE---STTTTCCHHHHHHHHHHHHH----HHHTTCEE-EEECCCHHHH-TTCSEE-EEEESSSGGGCCEEEEEEC
T ss_pred CcEEEEe---CCCCCCCHHHHHHHHHHHHH----HHHCCCEE-EEEeCCHHHH-HhCCEE-EEecCCcCCCCCEEEEecC
Confidence 4699999 99999999886443332211 11001111 1113999876 569998 777 7899887764
No 195
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.38 E-value=3.8e-07 Score=82.84 Aligned_cols=82 Identities=16% Similarity=0.081 Sum_probs=49.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHH-HHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNT-LTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~-Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~ 100 (406)
...+|+++|.+|||||||+|. +.|..... .+.+++|..... +.+.+. ...+.++|++|...
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~---------------~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV--FHTNRG---------------PIKFNVWDTAGQEK 76 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEE--EEETTE---------------EEEEEEEEECSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEE--EEECCE---------------EEEEEEEeCCChHH
Confidence 346899999999999999999 55542221 334443433222 222322 12488999999543
Q ss_pred cccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 101 ~~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
... .....++.+|+++.|+|+
T Consensus 77 ~~~-------~~~~~~~~~~~~i~v~d~ 97 (221)
T 3gj0_A 77 FGG-------LRDGYYIQAQCAIIMFDV 97 (221)
T ss_dssp TSC-------CCHHHHTTCCEEEEEEET
T ss_pred HhH-------HHHHHHhcCCEEEEEEEC
Confidence 211 112345678888887766
No 196
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.38 E-value=6.8e-07 Score=92.77 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCC------CCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeec
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAE------NFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~------~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~ 96 (406)
...+|+|+|.+|||||||+|.+++...... ...+++..|+.|.+.+.+ ......+.++|++
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~-------------~~~~~~~~i~Dt~ 106 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDD-------------ELKECLFHFWDFG 106 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCS-------------TTTTCEEEEECCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecC-------------CCceEEEEEEECC
Confidence 347999999999999999999998753211 111111112211222211 0112358999999
Q ss_pred cccccccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 97 GLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 97 gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
|..... .+.. ..++.+|++++|+|+.
T Consensus 107 G~e~~~----~~~~---~~l~~~d~ii~V~D~s 132 (535)
T 3dpu_A 107 GQEIMH----ASHQ---FFMTRSSVYMLLLDSR 132 (535)
T ss_dssp SCCTTT----TTCH---HHHHSSEEEEEEECGG
T ss_pred cHHHHH----HHHH---HHccCCcEEEEEEeCC
Confidence 943221 1222 2356788888887763
No 197
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.38 E-value=7.2e-08 Score=97.27 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=60.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
-.+|+|+|..|+|||||+|.|++.... .++++++|.++....+.+.+. ..+.++||||.....
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~----------------~~l~liDTpG~~d~~ 97 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI----------------GPVTLVDTPGLDDVG 97 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT----------------EEEEEEECSSTTCCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC----------------CeEEEEECcCCCccc
Confidence 468999999999999999999998763 478999999999888887653 148999999988654
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
..+.....+....++.+|++++|+|+
T Consensus 98 ~l~~~~~~~~~~~l~~aD~vllVvD~ 123 (423)
T 3qq5_A 98 ELGRLRVEKARRVFYRADCGILVTDS 123 (423)
T ss_dssp TTCCCCHHHHHHHHTSCSEEEEECSS
T ss_pred chhHHHHHHHHHHHhcCCEEEEEEeC
Confidence 33333333445667789999998887
No 198
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.36 E-value=6.1e-07 Score=77.23 Aligned_cols=81 Identities=21% Similarity=0.282 Sum_probs=52.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
....+++++|++|+|||||++.+++.... .. ..|+......+.+.+ ..+.++|+||....
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~ 64 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TT--IPTIGFNVETVTYKN-----------------LKFQVWDLGGLTSI 64 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CC--CCCSSEEEEEEEETT-----------------EEEEEEEECCCGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-Cc--CCcCccceEEEEECC-----------------EEEEEEECCCChhh
Confidence 34578999999999999999999876432 11 113333334444443 24899999996532
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
.. .....++.+|+++.|+|+.
T Consensus 65 ~~-------~~~~~~~~~d~ii~v~d~~ 85 (171)
T 1upt_A 65 RP-------YWRCYYSNTDAVIYVVDSC 85 (171)
T ss_dssp GG-------GGGGGCTTCSEEEEEEETT
T ss_pred hH-------HHHHHhccCCEEEEEEECC
Confidence 21 1223456788888887774
No 199
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.35 E-value=3.2e-07 Score=81.15 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=52.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
....+|+|+|++|+|||||++.|++........ .|+..+...+...+ ..+.++|++|....
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~ 80 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMI--PTVGFNMRKITKGN-----------------VTIKLWDIGGQPRF 80 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEETT-----------------EEEEEEEECCSHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccC--CCCceeEEEEEeCC-----------------EEEEEEECCCCHhH
Confidence 345799999999999999999999875432211 23333333333322 34899999996432
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
.. .....++.+|++++|+|+.
T Consensus 81 ~~-------~~~~~~~~~d~ii~v~D~~ 101 (188)
T 1zd9_A 81 RS-------MWERYCRGVSAIVYMVDAA 101 (188)
T ss_dssp HT-------THHHHHTTCSEEEEEEETT
T ss_pred HH-------HHHHHHccCCEEEEEEECC
Confidence 11 1223457788888887763
No 200
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.34 E-value=4.2e-07 Score=79.89 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=53.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
.+..+++++|++|+|||||++.+++.. ...+. .|+......+.+++ ..+.++|+||....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~ 75 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGFNIKTLEHRG-----------------FKLNIWDVGGQKSL 75 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSEEEEEEEETT-----------------EEEEEEEECCSHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCccceEEEEECC-----------------EEEEEEECCCCHhH
Confidence 356799999999999999999999875 22111 13334444555543 24899999997532
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
.. .....++.+|+++.|+|+.
T Consensus 76 ~~-------~~~~~~~~~d~ii~v~d~~ 96 (186)
T 1ksh_A 76 RS-------YWRNYFESTDGLIWVVDSA 96 (186)
T ss_dssp HT-------TGGGGCTTCSEEEEEEETT
T ss_pred HH-------HHHHHhcCCCEEEEEEECc
Confidence 21 1123456788888877763
No 201
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.34 E-value=3.7e-07 Score=87.72 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAI 49 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~ 49 (406)
-..|+|+|.+|||||||+|+|+|...
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 35899999999999999999999865
No 202
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.34 E-value=2.8e-07 Score=82.70 Aligned_cols=62 Identities=23% Similarity=0.204 Sum_probs=38.2
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeec
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAI--PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~--~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~ 96 (406)
-.+.+|.+++|+|+||||||||+|+|+|... .+.+.+++|.. .+.+.+.+ .+.++|+|
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~--~~~~~~~~------------------~~~l~Dt~ 80 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL--INLFEVAD------------------GKRLVDLP 80 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC--EEEEEEET------------------TEEEEECC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee--eEEEEecC------------------CEEEEECc
Confidence 3577899999999999999999999999852 11334444432 12222222 36899999
Q ss_pred cccc
Q 015465 97 GLVR 100 (406)
Q Consensus 97 gl~~ 100 (406)
|+..
T Consensus 81 G~~~ 84 (210)
T 1pui_A 81 GYGY 84 (210)
T ss_dssp CCC-
T ss_pred CCcc
Confidence 9753
No 203
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.33 E-value=3.1e-07 Score=84.73 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=26.4
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHc
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg 46 (406)
|.+++|+.++|+||||||||||+++|++
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999999999994
No 204
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.33 E-value=4.2e-07 Score=79.83 Aligned_cols=80 Identities=23% Similarity=0.241 Sum_probs=52.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+|+++|++|+|||||++.|++.... ....|...+...+.+.+ ..+.++|++|.....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~ 79 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINN-----------------TRFLMWDIGGQESLR 79 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCE---EEECCSSSSCEEEEETT-----------------EEEEEEEESSSGGGT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC---ccCCcCceeeEEEEECC-----------------EEEEEEECCCCHhHH
Confidence 4579999999999999999999987541 11112223334454443 248999999975322
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
. .....++.+|+++.|+|+.
T Consensus 80 ~-------~~~~~~~~~d~ii~v~D~~ 99 (181)
T 2h17_A 80 S-------SWNTYYTNTEFVIVVVDST 99 (181)
T ss_dssp C-------GGGGGGTTCCEEEEEEETT
T ss_pred H-------HHHHHhccCCEEEEEEECC
Confidence 1 2234457788888888774
No 205
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.33 E-value=5.1e-06 Score=76.03 Aligned_cols=81 Identities=25% Similarity=0.275 Sum_probs=46.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCc--eeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN--EARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~--~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
..+|.|||.+|+|||||++.++.........| |+..+ .-.+.+++.. ..+.++||+|....
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~--Tig~d~~~k~~~~~~~~---------------v~l~iwDtaGqe~~ 75 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--TIGIDFLSKTMYLEDRT---------------IRLQLWDTAGLERF 75 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSCE---------------EEEEEECCSCTTTC
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCC--ccceEEEEEEEEecceE---------------EEEEEEECCCchhh
Confidence 36899999999999999999986643211111 22111 1233444432 34789999995432
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.. + .....+.+++++.|.|.
T Consensus 76 ~~----l---~~~~~~~a~~~ilv~di 95 (216)
T 4dkx_A 76 RS----L---IPSYIRDSAAAVVVYDI 95 (216)
T ss_dssp GG----G---HHHHHTTCSEEEEEEET
T ss_pred hh----H---HHHHhccccEEEEEeec
Confidence 21 1 12345677777665544
No 206
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.30 E-value=2.1e-07 Score=83.59 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (406)
|++++|+|+||||||||+++|+|. .. ++| +.++|.+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~-----------~~-~~G-i~~~g~~ 36 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV-----------LK-SSG-VPVDGFY 36 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH-----------HH-HTT-CCCEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhh-----------cc-cCC-EEEcCEe
Confidence 578999999999999999999998 44 566 6665543
No 207
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.30 E-value=6.3e-07 Score=79.64 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
++++|+||||||||||+++|+|.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999998
No 208
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.29 E-value=5.9e-07 Score=79.18 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=52.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+|+++|++|+|||||++.+++.... .. ..|+..+...+.+.+ ..+.++|++|.....
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~ 74 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HT--SPTIGSNVEEIVINN-----------------TRFLMWDIGGQESLR 74 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EE--ECCSCSSCEEEEETT-----------------EEEEEEECCC----C
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cC--cCCCccceEEEEECC-----------------EEEEEEECCCCHhHH
Confidence 4579999999999999999999976432 11 123334444555543 248999999975322
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
......++.+|+++.|+|+.
T Consensus 75 -------~~~~~~~~~~d~ii~v~d~~ 94 (187)
T 1zj6_A 75 -------SSWNTYYTNTEFVIVVVDST 94 (187)
T ss_dssp -------GGGHHHHTTCCEEEEEEETT
T ss_pred -------HHHHHHhcCCCEEEEEEeCC
Confidence 12234467788888888774
No 209
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.29 E-value=3.9e-07 Score=80.25 Aligned_cols=75 Identities=27% Similarity=0.380 Sum_probs=50.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCcee----EEEcCCcchhhhhhhccCCCCcCceeEEEeeccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA----RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G----~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl 98 (406)
...+++++|++|||||||++.+++... ....|+.| .+.+++ ..+.++|++|.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-------~~~~~t~g~~~~~~~~~~-----------------~~l~i~Dt~G~ 70 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-------SHITPTQGFNIKSVQSQG-----------------FKLNVWDIGGQ 70 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-------EEEEEETTEEEEEEEETT-----------------EEEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-------CcccCcCCeEEEEEEECC-----------------EEEEEEECCCC
Confidence 457999999999999999999998732 12233333 344432 24889999985
Q ss_pred cccccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 99 VRGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 99 ~~~~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.... ......++.+|++++|+|+
T Consensus 71 ~~~~-------~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 71 RKIR-------PYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp GGGH-------HHHHHHHTTCSEEEEEEET
T ss_pred HHHH-------HHHHHHhCCCCEEEEEEEC
Confidence 4321 1223445778888887776
No 210
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.29 E-value=3.1e-07 Score=80.27 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=50.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
....+++++|++|||||||++.+++.... . ...|+......+.+++ ..+.++|+||....
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~ 75 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV--T-TKPTIGFNVETLSYKN-----------------LKLNVWDLGGQTSI 75 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE--E-ECSSTTCCEEEEEETT-----------------EEEEEEEEC----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC--c-cCCcCccceEEEEECC-----------------EEEEEEECCCCHhH
Confidence 35689999999999999999999976331 0 1112233344454443 24899999997542
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
.. .....++.+|+++.|+|+.
T Consensus 76 ~~-------~~~~~~~~~d~ii~v~d~~ 96 (183)
T 1moz_A 76 RP-------YWRCYYADTAAVIFVVDST 96 (183)
T ss_dssp CT-------TGGGTTTTEEEEEEEEETT
T ss_pred HH-------HHHHHhccCCEEEEEEECC
Confidence 21 1224457788888888774
No 211
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.28 E-value=6.6e-07 Score=76.59 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=49.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
+++++|++|+|||||++.+++.... ...| |+......+...+ ..+.++|+||.....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~--- 58 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR--- 58 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSS-----------------CEEEEEECCCCGGGH---
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECC-----------------EEEEEEEcCCChhhH---
Confidence 6899999999999999999876432 1122 3444444444433 248999999964321
Q ss_pred CCCcchhhhhHHhhhchhhhhcc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 59 ----~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 59 ----PLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp ----HHHHHHTTTCSEEEEEEET
T ss_pred ----HHHHHHhccCCEEEEEEEC
Confidence 1122345678888887766
No 212
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.28 E-value=1.7e-07 Score=92.82 Aligned_cols=59 Identities=27% Similarity=0.403 Sum_probs=42.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEee
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLA-------IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~-------~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~ 95 (406)
.+..++++|.+|+|||||+|+|+|.. ..++++|+||..+.... +.+ .+.++||
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~~------------------~~~liDt 218 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LDE------------------ESSLYDT 218 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SSS------------------SCEEEEC
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ecC------------------CeEEEeC
Confidence 45789999999999999999999862 23478999997765433 321 2789999
Q ss_pred cccccc
Q 015465 96 AGLVRG 101 (406)
Q Consensus 96 ~gl~~~ 101 (406)
||+...
T Consensus 219 PG~~~~ 224 (368)
T 3h2y_A 219 PGIINH 224 (368)
T ss_dssp CCBCCT
T ss_pred CCcCcH
Confidence 999764
No 213
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.27 E-value=1e-06 Score=76.97 Aligned_cols=82 Identities=22% Similarity=0.190 Sum_probs=51.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|++|+|||||++.+++.... ..+..++.......+.+.+.. ..+.++|+||......
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 68 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGQEDYDR 68 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETTEE---------------EEEEEECCCCSGGGTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECCEE---------------EEEEEEECCCCHhHHH
Confidence 368999999999999999999976432 233333333223344454432 2478999999753221
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+ ....++.+|+++.|+|+
T Consensus 69 ----~---~~~~~~~~d~~i~v~d~ 86 (186)
T 1mh1_A 69 ----L---RPLSYPQTDVSLICFSL 86 (186)
T ss_dssp ----T---GGGGCTTCSEEEEEEET
T ss_pred ----H---HHHhccCCcEEEEEEEC
Confidence 1 11234677888777765
No 214
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.26 E-value=9e-07 Score=78.37 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+|+|+|.+|+|||||++.|++......++.. |+......+...+ ..+.++|++|.....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~ 77 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKGR-----------------VAFTVFDMGGAKKFR 77 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEETT-----------------EEEEEEEECCSGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeCC-----------------EEEEEEECCCCHhHH
Confidence 3468999999999999999999988653312111 2222233333222 348999999975322
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
. .....++.+|++++|+|+.
T Consensus 78 ~-------~~~~~~~~~d~ii~v~D~~ 97 (199)
T 4bas_A 78 G-------LWETYYDNIDAVIFVVDSS 97 (199)
T ss_dssp G-------GGGGGCTTCSEEEEEEETT
T ss_pred H-------HHHHHHhcCCEEEEEEECC
Confidence 1 1223457788888888774
No 215
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.24 E-value=8.7e-07 Score=88.72 Aligned_cols=91 Identities=21% Similarity=0.245 Sum_probs=51.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccC---------C--CCcCcee
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKP---------K--SAVPAFL 90 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p---------~--~~~~~~i 90 (406)
+..+|+++|.+|+|||||+|+|+|..... .+++.+|. +.. ..... ...+.. . ......+
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~----~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNI----GVC--ESCKK---PEAYVTEPSCKSCGSDDEPKFLRRI 77 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEE----EEC--TTSCT---TTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccce----eec--ccccc---ccceecccccccccccccccccceE
Confidence 35799999999999999999999964321 12221111 000 00000 000000 0 0111458
Q ss_pred EEEeeccccccccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 91 ~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
.++|+||... +...+...++.+|+++.|+|+.
T Consensus 78 ~iiDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~ 109 (403)
T 3sjy_A 78 SFIDAPGHEV-------LMATMLSGAALMDGAILVVAAN 109 (403)
T ss_dssp EEEECCCCGG-------GHHHHHHHHTTCSEEEEEEETT
T ss_pred EEEECCCcHH-------HHHHHHHHHhhCCEEEEEEECC
Confidence 8999999432 2334456667889988888874
No 216
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.23 E-value=1.4e-06 Score=74.70 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=49.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCc-eeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~-~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
..+|+++|++|+|||||+|.|++........| |.... ...+.+++. ...+.++|+||.....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~---------------~~~~~~~Dt~G~~~~~ 65 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIP--TVEDTYRQVISCDKS---------------ICTLQITDTTGSHQFP 65 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCC--CSCEEEEEEEEETTE---------------EEEEEEEECCSCSSCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--CccccEEEEEEECCE---------------EEEEEEEECCCchhhH
Confidence 36899999999999999999998754322111 11111 112223322 1247899999954321
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 66 -------~~~~~~~~~~~~~i~v~d~ 84 (172)
T 2erx_A 66 -------AMQRLSISKGHAFILVYSI 84 (172)
T ss_dssp -------HHHHHHHHHCSEEEEEEET
T ss_pred -------HHHHHhcccCCEEEEEEEC
Confidence 1223445778888887766
No 217
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.22 E-value=1.8e-06 Score=77.56 Aligned_cols=82 Identities=21% Similarity=0.191 Sum_probs=54.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+++++|++|+|||||++.+++.... ..++.|+.......+.+++.. ..+.++|++|......
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 72 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGQI---------------VNLGLWDTAGQEDYSR 72 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCEEEEEECSSCE---------------EEEEEECCCCCCCCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeEEEEEEECCEE---------------EEEEEEECCCcHHHHH
Confidence 368999999999999999999986542 344444444444455555432 2589999999753221
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
+ ....++.+|+++.|+|+
T Consensus 73 ----~---~~~~~~~~d~~ilv~d~ 90 (212)
T 2j0v_A 73 ----L---RPLSYRGADIFVLAFSL 90 (212)
T ss_dssp ---------CGGGTTCSEEEEEEET
T ss_pred ----H---HHhhccCCCEEEEEEEC
Confidence 1 11345678888887765
No 218
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.22 E-value=1.2e-06 Score=89.92 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=59.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+++|+|.+|+|||||+|.|++... .. .+.|+..+.+.+.+.+. .+.++||+|.....
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVETVTYKNV-----------------KFNVWDVGGQDKIR 380 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEEEESSSC-----------------EEEEEEECCCGGGS
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEEEEeCCE-----------------EEEEEECCCcHHHH
Confidence 347899999999999999999998863 22 34477777777777653 48999999954322
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
......++.+|++++|+|+.
T Consensus 381 -------~~~~~~~~~ad~~i~V~D~~ 400 (497)
T 3lvq_E 381 -------PLWRHYYTGTQGLIFVVDCA 400 (497)
T ss_dssp -------GGGGGGGTTCCEEEEEEETT
T ss_pred -------HHHHHHhccCCEEEEEEECc
Confidence 12335567899999988874
No 219
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.21 E-value=9.4e-08 Score=85.44 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=56.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
-.+|+|+|++|+|||||+|.|++........|..|.+.....+.+++.. ..+.++|++|......
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 97 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERFRT 97 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEE---------------EEEEEECCTTCTTCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEE---------------EEEEEEECCCcHhHHH
Confidence 3689999999999999999999876544444555556666667766542 2488999999543221
Q ss_pred CCCCCcchhhhhHHhhhchhhhhccc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
.....++.+|+++.|+|+.
T Consensus 98 -------~~~~~~~~~d~~i~v~d~~ 116 (199)
T 3l0i_B 98 -------ITSSYYRGAHGIIVVYDVT 116 (199)
T ss_dssp -------CSCC--CCCSEEEECC-CC
T ss_pred -------HHHHHhhcCCEEEEEEECC
Confidence 1223456788888877763
No 220
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.21 E-value=1.3e-06 Score=78.46 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=53.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
+..+|+++|++|+|||||++.+++... ...++.++.......+.+++.. ..+.++|+||.....
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~ 92 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGLEDYD 92 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-CE---------------EEEEEEEECCSGGGT
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCEE---------------EEEEEEECCCchhhH
Confidence 457999999999999999999997643 2334444444344445555442 246799999974322
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
. .....++.+|+++.|+|+
T Consensus 93 ~-------~~~~~~~~~d~~i~v~d~ 111 (204)
T 4gzl_A 93 R-------LRPLSYPQTDVFLICFSL 111 (204)
T ss_dssp T-------TGGGGCTTCSEEEEEEET
T ss_pred H-------HHHHHhccCCEEEEEEEC
Confidence 1 122345678888887766
No 221
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.21 E-value=9.5e-07 Score=78.28 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=34.4
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
.+.+|+.++|+|+|||||||++++|+|. +..|.+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-------------~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-------------PGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-------------SSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-------------cCCCeEEEcccch
Confidence 3678999999999999999999999987 5678888876543
No 222
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.19 E-value=9.4e-07 Score=78.63 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
+..+|+++|++|+|||||++.+++.... .. ..|+......+.+.+ ..+.++|+||.....
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~ 87 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ICFTVWDVGGQDKIR 87 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEETT-----------------EEEEEEECC-----C
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEECC-----------------EEEEEEECCCCHhHH
Confidence 4579999999999999999999876421 11 113333333343332 248999999975321
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
......++.+|+++.|+|+.
T Consensus 88 -------~~~~~~~~~~d~iilv~D~~ 107 (192)
T 2b6h_A 88 -------PLWRHYFQNTQGLIFVVDSN 107 (192)
T ss_dssp -------TTHHHHHHTCCEEEEEEETT
T ss_pred -------HHHHHHhccCCEEEEEEECC
Confidence 12234567889888887763
No 223
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.16 E-value=1.6e-07 Score=101.91 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=25.6
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHH-HHcC
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNT-LTKL 47 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~-Ltg~ 47 (406)
.-.++.|+++||+|+||||||||++. |+|.
T Consensus 517 sl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 517 DVRFPLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp EEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred eEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 34578999999999999999999996 6643
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.16 E-value=2.1e-06 Score=89.87 Aligned_cols=67 Identities=24% Similarity=0.163 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
..+|+|+|+||+|||||+|.|+|..... +++++|...+.|...+.- + .|. .....+.++||||+...
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~-~--------~~~-~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCV-P--------HPK-KPGHILVLLDTEGLGDV 104 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEE-E--------CSS-STTCEEEEEEECCBCCG
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeec-c--------ccc-CCCceEEEecCCCcCcc
Confidence 3678999999999999999999986544 778888888888754310 0 000 01235899999999754
No 225
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.15 E-value=1.3e-06 Score=77.03 Aligned_cols=83 Identities=23% Similarity=0.302 Sum_probs=46.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~ 101 (406)
....+++++|++|||||||++.|++..... ...+..|..+. .+. ...+.++|+||....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~~~-~~~-----------------~~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLSAA-DYD-----------------GSGVTLVDFPGHVKL 104 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCC-----------------CTTCSEEEETTCCBS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCceee-eec-----------------CCeEEEEECCCCchH
Confidence 345699999999999999999999875321 00111222111 011 124789999997543
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.. .+...+...+..+|++++|+|+
T Consensus 105 ~~---~~~~~~~~~~~~~~~~i~v~d~ 128 (193)
T 2ged_A 105 RY---KLSDYLKTRAKFVKGLIFMVDS 128 (193)
T ss_dssp SC---CHHHHHHHHGGGEEEEEEEEET
T ss_pred HH---HHHHHHHhhcccCCEEEEEEEC
Confidence 21 1111122223447888887776
No 226
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.14 E-value=9.4e-07 Score=85.04 Aligned_cols=64 Identities=22% Similarity=0.220 Sum_probs=37.2
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEc---CCcchhhhhhhccCCCCcCceeEEEeecc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI---PDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v---~g~~~~~l~~~~~p~~~~~~~i~lvD~~g 97 (406)
+..|++++|+|+||||||||+|+|+|. ..|++|.+.+ .|..+......+. ....-.++|+||
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~-----------~~~~~G~i~~~~~~g~~~t~~~~~~~----~~~~g~v~q~p~ 230 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPG-----------LKLRVSEVSEKLQRGRHTTTTAQLLK----FDFGGYVVDTPG 230 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTT-----------CCCC-------------CCCSCCEEE----CTTSCEEESSCS
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccc-----------ccccccceecccCCCCCceeeeEEEE----cCCCCEEEECcC
Confidence 346889999999999999999999999 6788999988 6654322111110 011235778887
Q ss_pred cc
Q 015465 98 LV 99 (406)
Q Consensus 98 l~ 99 (406)
+.
T Consensus 231 ~~ 232 (301)
T 1u0l_A 231 FA 232 (301)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 227
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.14 E-value=4.1e-06 Score=84.29 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~ 49 (406)
..++|+|+||||||||+|+|+|...
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4689999999999999999999864
No 228
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.14 E-value=5.6e-07 Score=84.93 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=37.5
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCc-eeEEEcCCcch
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDERF 73 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~-~G~i~v~g~~~ 73 (406)
+.+|..++|+||||||||||+++|+|. ..|+ +|.|.+.+.++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~-----------~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY-----------INQTKSYHIITIEDPI 64 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH-----------HHHHCCCEEEEEESSC
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh-----------CCCCCCCEEEEcCCcc
Confidence 788999999999999999999999998 6787 89998877654
No 229
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.14 E-value=9.4e-07 Score=79.94 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=25.2
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~ 48 (406)
..+.+|++++|+||||||||||+++|+|..
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 368899999999999999999999999985
No 230
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.14 E-value=1.2e-06 Score=76.33 Aligned_cols=82 Identities=21% Similarity=0.184 Sum_probs=43.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+++++|++|+|||||++.+++.... ..++.|+.......+.+++. ...+.++|+||......
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 71 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGA---------------TVNLGLWDTAGQEDYNR 71 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC----------------------CEEECCCC-CTTTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEECCE---------------EEEEEEEECCCChhhhh
Confidence 468999999999999999999986432 22222221111111122221 12477999999643221
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
.....++.+|+++.|+|+
T Consensus 72 -------~~~~~~~~~d~~i~v~d~ 89 (182)
T 3bwd_D 72 -------LRPLSYRGADVFILAFSL 89 (182)
T ss_dssp -------TGGGGGTTCSEEEEEEET
T ss_pred -------hHHhhccCCCEEEEEEEC
Confidence 112345677888777765
No 231
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.13 E-value=3.4e-07 Score=90.05 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+..++|+|+||||||||+|.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999974
No 232
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.13 E-value=5.6e-07 Score=81.12 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=33.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCccccCCceeEEEcCCcc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPA--ENFPFCTIEPNEARVNIPDER 72 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~--~~~p~~T~~p~~G~i~v~g~~ 72 (406)
++|..++|+||||||||||+++|+|..... .....+|+.|..|. ++|..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~ 52 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKD 52 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCce
Confidence 357899999999999999999999974321 23345566677775 34543
No 233
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.13 E-value=1.5e-06 Score=76.54 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
+..+++++|++|+|||||++.+++.... ...| |+......+.+.+ ..+.++|+||.....
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKN-----------------ISFEVWDLGGQTGVR 80 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETT-----------------EEEEEEEECCSSSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECC-----------------EEEEEEECCCCHhHH
Confidence 5679999999999999999999866431 1111 3334444455443 248999999975332
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
.. ....++.+|+++.|+|+.
T Consensus 81 ~~-------~~~~~~~~d~ii~v~d~~ 100 (189)
T 2x77_A 81 PY-------WRCYFSDTDAVIYVVDST 100 (189)
T ss_dssp CC-------CSSSSTTCCEEEEEEETT
T ss_pred HH-------HHHHhhcCCEEEEEEeCC
Confidence 21 113346788888888774
No 234
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.13 E-value=3.7e-06 Score=82.68 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP 61 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p 61 (406)
..|+|+|++|||||||+|+|+|..........+|..|
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 3999999999999999999999765333333444444
No 235
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.12 E-value=2e-06 Score=84.85 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=24.9
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..++..++|+||||||||||+++|+|.
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 456789999999999999999999998
No 236
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.11 E-value=1.3e-06 Score=85.96 Aligned_cols=44 Identities=25% Similarity=0.215 Sum_probs=39.5
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
-.+.+|+++||+|+||||||||+++|+|. ..|+.|.+.+.|.+.
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~-----------~~~~~g~i~~~G~~~ 109 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNG-----------ASADIIVLALIGERG 109 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH-----------SCCSEEEEEEESCCH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCEEEEEEecccH
Confidence 45778999999999999999999999999 678999998888764
No 237
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.11 E-value=7.3e-07 Score=81.61 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=24.5
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+..-.+.+|+.++|+||||||||||+++|+|.
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34455789999999999999999999999998
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.11 E-value=4.1e-07 Score=87.86 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=35.4
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEc---CCcchhhhhhhccCCCCcCceeEEEe
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI---PDERFEWLCQLFKPKSAVPAFLEIHD 94 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v---~g~~~~~l~~~~~p~~~~~~~i~lvD 94 (406)
+-.+.+|++++|+|+||||||||+|+|+|. ..|..|.+.+ .|.........+ ... ...++|
T Consensus 167 L~~~~~G~~~~lvG~sG~GKSTLln~L~g~-----------~~~~~G~I~~~~~~G~~tt~~~~~~----~~~-~g~v~d 230 (307)
T 1t9h_A 167 IIPHFQDKTTVFAGQSGVGKSSLLNAISPE-----------LGLRTNEISEHLGRGKHTTRHVELI----HTS-GGLVAD 230 (307)
T ss_dssp TGGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------------CCCCCEE----EET-TEEEES
T ss_pred HHhhcCCCEEEEECCCCCCHHHHHHHhccc-----------ccccccceeeecCCCcccccHHHHh----hcC-CEEEec
Confidence 345667999999999999999999999998 5677888876 444321111100 001 236788
Q ss_pred eccccc
Q 015465 95 IAGLVR 100 (406)
Q Consensus 95 ~~gl~~ 100 (406)
+||+..
T Consensus 231 tpg~~~ 236 (307)
T 1t9h_A 231 TPGFSS 236 (307)
T ss_dssp SCSCSS
T ss_pred CCCccc
Confidence 888754
No 239
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.11 E-value=5e-06 Score=83.29 Aligned_cols=96 Identities=23% Similarity=0.168 Sum_probs=55.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCccccCCceeEEEcCCcchhhhhhhccCCC-------C--cCceeE
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA---ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-------A--VPAFLE 91 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~---~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~-------~--~~~~i~ 91 (406)
..+++++|..|+|||||++.|+|..... ...++.|+........+...+ ... .|.... . ....+.
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~--~~~-~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCP--NCG-RYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECT--TTC-CEESSSBCTTTCCBCEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeeccccc--ccc-cccccccccccCcccccccEEE
Confidence 3689999999999999999999874321 223455665443333321100 000 011000 0 013589
Q ss_pred EEeeccccccccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 92 lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
++|+||.... ...+...+..+|+++.|+|+.
T Consensus 87 iiDtPGh~~f-------~~~~~~~~~~~D~~ilVvda~ 117 (410)
T 1kk1_A 87 FIDAPGHEAL-------MTTMLAGASLMDGAILVIAAN 117 (410)
T ss_dssp EEECSSHHHH-------HHHHHHCGGGCSEEEEEEETT
T ss_pred EEECCChHHH-------HHHHHhhhhhCCEEEEEEECC
Confidence 9999995432 123344556778888888874
No 240
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.10 E-value=3.9e-06 Score=74.15 Aligned_cols=81 Identities=21% Similarity=0.214 Sum_probs=49.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCce-eEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE-ARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~-G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
..+|+++|++|||||||+|.|++........| |..... ..+.+++. ...+.++|+||.....
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 70 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP--TIEDTYRQVISCDKS---------------VCTLQITDTTGSHQFP 70 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC--CCCEEEEEEEEETTE---------------EEEEEEEECCGGGSCH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcccC--ccccceeEEEEECCE---------------EEEEEEEeCCChHHhH
Confidence 46899999999999999999998654321111 111111 12223322 1248899999954321
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhcc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|+++.|+|+
T Consensus 71 -------~~~~~~~~~~d~~i~v~d~ 89 (199)
T 2gf0_A 71 -------AMQRLSISKGHAFILVFSV 89 (199)
T ss_dssp -------HHHHHHHHHCSEEEEEEET
T ss_pred -------HHHHHhhccCCEEEEEEEC
Confidence 1222345778888777765
No 241
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.10 E-value=1.9e-06 Score=81.94 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAI 49 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~ 49 (406)
..+|+++|.+|||||||+|+|+|...
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 45899999999999999999999865
No 242
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.09 E-value=3.1e-06 Score=79.81 Aligned_cols=58 Identities=28% Similarity=0.338 Sum_probs=38.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
.+++++|.||+|||||+|.|+|... .+++.|++|.... .+.+. ..+.++||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSLE------------------NGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEECT------------------TSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEeC------------------CCEEEEECCCcccCc
Confidence 5999999999999999999999875 4577888876653 23322 237999999988543
No 243
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.09 E-value=4.3e-06 Score=73.20 Aligned_cols=53 Identities=32% Similarity=0.260 Sum_probs=42.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccc
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~ 99 (406)
+++++|++|+|||||++.+++........|++|..+....+ . .+.++|+||+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~--~-------------------~~~l~Dt~G~~ 55 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW--K-------------------NHKIIDMPGFG 55 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE--T-------------------TEEEEECCCBS
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec--C-------------------CEEEEECCCcc
Confidence 68999999999999999999987766777777766543322 1 27899999975
No 244
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.08 E-value=3.6e-06 Score=87.11 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=38.9
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHH--HHcCCCCCCCCCccccCCceeEEEcCCcc
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNT--LTKLAIPAENFPFCTIEPNEARVNIPDER 72 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~--Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (406)
+|.+.+|+.++|+|+||||||||+++ ++|. ..|..|.+.+.+.+
T Consensus 33 ~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl-----------~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 33 HGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI-----------IEFDEPGVFVTFEE 78 (525)
T ss_dssp TSSEETTSEEEEEESTTSSHHHHHHHHHHHHH-----------HHHCCCEEEEESSS
T ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH-----------HhCCCCEEEEEEeC
Confidence 35888999999999999999999999 6788 66788999998865
No 245
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.07 E-value=2.3e-06 Score=90.30 Aligned_cols=84 Identities=19% Similarity=0.116 Sum_probs=57.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCC-------------------------------CCccccCCceeEEEcCC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAEN-------------------------------FPFCTIEPNEARVNIPD 70 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~-------------------------------~p~~T~~p~~G~i~v~g 70 (406)
.+..+|+++|.+|+|||||++.|++....+.. .++.|+......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 34679999999999999999999977433221 13455555555554443
Q ss_pred cchhhhhhhccCCCCcCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 71 ERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 71 ~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
..+.++||||... +...+...++.+|++++|+|+.
T Consensus 245 -----------------~~~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~ 279 (611)
T 3izq_1 245 -----------------ANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCS 279 (611)
T ss_dssp -----------------CEEEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECS
T ss_pred -----------------ceEEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECC
Confidence 2489999999643 2233345567788888888773
No 246
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.07 E-value=3.5e-06 Score=84.73 Aligned_cols=31 Identities=35% Similarity=0.364 Sum_probs=26.9
Q ss_pred cccCCCcE--EEEEcCCCCCHHHHHHHHHcCCC
Q 015465 19 GRFSSHLK--IGIVGLPNVGKSTLFNTLTKLAI 49 (406)
Q Consensus 19 g~v~~g~~--igliG~nGaGKSTLln~Ltg~~~ 49 (406)
-.+.+|++ +||+|+||||||||+|+|+|...
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCccc
Confidence 45778999 99999999999999999999853
No 247
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.07 E-value=1.5e-06 Score=85.87 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=37.8
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCc
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~ 71 (406)
..+.+|+.++|+|+||||||||+++|+|. +.|+.|.|.++|.
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~-----------~~~~~g~I~ie~~ 211 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQE-----------IPFDQRLITIEDV 211 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHTT-----------SCTTSCEEEEESS
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHhc-----------CCCCceEEEECCc
Confidence 34678999999999999999999999999 7789999999874
No 248
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.06 E-value=1.3e-06 Score=80.26 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=24.8
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~ 48 (406)
.++|..++|+||||||||||+++|+|..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 5679999999999999999999999984
No 249
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.06 E-value=9.4e-07 Score=94.58 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFC 57 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~ 57 (406)
..+.+|+|+|.+|+|||||+|+|+|....+ +..|.|
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 457899999999999999999999987643 555554
No 250
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.05 E-value=9.9e-07 Score=90.14 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=39.9
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchh
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~ 74 (406)
....+.+ ++++|+||||||||||+++|+|. ..|++|.|.++|.++.
T Consensus 23 vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 23 RTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA-----------LIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEECCS-SEEEEECCTTSSHHHHHHHHHHH-----------HCCCTTTCCCCCTTSC
T ss_pred eEEEEcc-ceEEEECCCCCcHHHHHHHHhcC-----------CCCCCCEEEECCEEcc
Confidence 3345778 99999999999999999999999 7889999999887654
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.04 E-value=1.8e-06 Score=78.11 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=34.6
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccC---CceeEEEcCCcc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDER 72 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~---p~~G~i~v~g~~ 72 (406)
..+|+++||+||||||||||+++|+|. .. +..|.+..+|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~-----------~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA-----------LSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH-----------HHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH-----------HhhcCCceEEEecCCCc
Confidence 467999999999999999999999998 44 357888877654
No 252
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.03 E-value=8.9e-06 Score=81.47 Aligned_cols=96 Identities=23% Similarity=0.177 Sum_probs=52.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCccccCCceeEEEcCCcchhhhhhhccCCC-------C--cCceeE
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA---ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-------A--VPAFLE 91 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~---~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~-------~--~~~~i~ 91 (406)
..+++++|..++|||||++.|+|..... ...++.|+...-....+...+ ... .|.... . ....+.
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~--~~~-~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCP--QCG-TYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECT--TTC-CEESSSBCTTSCCBCEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccccccccccc--ccc-cccccccccccCcccccccEEE
Confidence 4689999999999999999999874321 223455655433332221000 000 011110 0 013589
Q ss_pred EEeeccccccccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 92 lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
++|+||.... ...+...+..+|+++.|+|+.
T Consensus 85 iiDtPGh~~f-------~~~~~~~~~~~D~~ilVvda~ 115 (408)
T 1s0u_A 85 FVDSPGHETL-------MATMLSGASLMDGAILVIAAN 115 (408)
T ss_dssp EEECSSHHHH-------HHHHHTTCSCCSEEEEEEETT
T ss_pred EEECCCHHHH-------HHHHHHhHhhCCEEEEEEECC
Confidence 9999995321 112333445668888887774
No 253
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.01 E-value=1e-06 Score=78.31 Aligned_cols=43 Identities=28% Similarity=0.217 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCccccCCceeEE
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA--ENFPFCTIEPNEARV 66 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~--~~~p~~T~~p~~G~i 66 (406)
|.+++|+||||||||||+++|+|..... .....+|..|..|.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~ 45 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc
Confidence 4579999999999999999999985321 233455666776664
No 254
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.01 E-value=3e-06 Score=85.81 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=39.5
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcc
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (406)
-.+.+|++++|+|+||||||||+++|+|. .+|+.|.+.+.|.+
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~-----------~~~~~G~i~~~G~r 194 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARY-----------TRADVIVVGLIGER 194 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHH-----------SCCSEEEEEEESCC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCeEEEEEecee
Confidence 46789999999999999999999999999 67999999999884
No 255
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.00 E-value=3.8e-06 Score=73.93 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+++|+|++|||||||++.+++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999986
No 256
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.99 E-value=6.1e-06 Score=85.92 Aligned_cols=107 Identities=19% Similarity=0.219 Sum_probs=59.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCccccCC-----ceeEEEcCCc-------chhhhhh---------
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP---AENFPFCTIEP-----NEARVNIPDE-------RFEWLCQ--------- 78 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~---~~~~p~~T~~p-----~~G~i~v~g~-------~~~~l~~--------- 78 (406)
.-..|+|+|.+|+|||||+|.|+|.... +++.|.||... ..|.+..... .+..+..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 3469999999999999999999999763 56777764310 0011111100 0000000
Q ss_pred --hccCCCCcCceeEEEeeccccccccC--CCCC--cchhhhhHHhhhchhhhhcccC
Q 015465 79 --LFKPKSAVPAFLEIHDIAGLVRGAHE--GQGL--GNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 79 --~~~p~~~~~~~i~lvD~~gl~~~~~~--~~~l--~~~~l~~l~~ad~ll~vvda~~ 130 (406)
+..| ......+.++||||+...... ...+ .......++.+|++++|+|+..
T Consensus 144 ~~~~~~-~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~ 200 (550)
T 2qpt_A 144 MCAQLP-NQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK 200 (550)
T ss_dssp EEEECC-CHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTS
T ss_pred eEEecc-ccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCc
Confidence 0000 000135899999999753321 1111 1223345688999999999853
No 257
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.99 E-value=2.1e-06 Score=82.62 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=30.6
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEc---CCcc
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI---PDER 72 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v---~g~~ 72 (406)
.+..|.+++|+|+||||||||+|+|+ . ..|.+|.|.+ .|..
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~-----------~~~~~G~i~~~~~~G~~ 204 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-G-----------EELRTQEVSEKTERGRH 204 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-S-----------CCCCCSCC---------
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-H-----------hhCcccccccccCCCCC
Confidence 44568999999999999999999999 7 5677888877 5544
No 258
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.99 E-value=1.8e-06 Score=79.39 Aligned_cols=50 Identities=18% Similarity=0.091 Sum_probs=28.2
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHH-cCCCCC-CCCCccccCCceeE
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLT-KLAIPA-ENFPFCTIEPNEAR 65 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Lt-g~~~~~-~~~p~~T~~p~~G~ 65 (406)
+..-.+.+|.++||+||||||||||+++|+ |..... ...+.+|..|..|.
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~ 70 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGE 70 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTC
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccc
Confidence 334457789999999999999999999999 884322 23344455555554
No 259
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.21 E-value=9.8e-07 Score=78.95 Aligned_cols=84 Identities=20% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~ 102 (406)
...+|+++|++|+|||||++.+++.... ..+..++.......+.+++.. ..+.++|+||.....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~ 92 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGQEDYD 92 (204)
Confidence 4578999999999999999999876431 222233322222333333321 236799999965322
Q ss_pred cCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 103 ~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
. .....++.+|+++.|+|+.
T Consensus 93 ~-------~~~~~~~~~d~iilv~D~~ 112 (204)
T 3th5_A 93 R-------LRPLSYPQTDVFLICFSLV 112 (204)
Confidence 1 1123457789999988774
No 260
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.97 E-value=1.9e-05 Score=86.85 Aligned_cols=24 Identities=25% Similarity=0.109 Sum_probs=22.4
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHH
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTL 44 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~L 44 (406)
+..|.+++|+|||||||||+++++
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHH
Confidence 467899999999999999999999
No 261
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.96 E-value=6.9e-06 Score=73.80 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=51.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+++++|++|+|||||++.+++... ...++. +..+...+.+++.. ...+.++|+||......
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~--~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~ 69 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTS--ITDSSAIYKVNNNR--------------GNSLTLIDLPGHESLRF 69 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCC--CSCEEEEEECSSTT--------------CCEEEEEECCCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-ccccCC--cceeeEEEEecCCC--------------ccEEEEEECCCChhHHH
Confidence 46899999999999999999998753 233432 22444456665321 13589999999653211
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda 128 (406)
......++.+|++++|+|+
T Consensus 70 ------~~~~~~~~~~~~~i~v~d~ 88 (214)
T 2fh5_B 70 ------QLLDRFKSSARAVVFVVDS 88 (214)
T ss_dssp ------HHHHHHGGGEEEEEEEEET
T ss_pred ------HHHHHHHhhCCEEEEEEEC
Confidence 0111235677887777665
No 262
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.96 E-value=1.1e-05 Score=75.32 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=22.2
Q ss_pred CcEEEEEcCC---------CCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLP---------NVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~n---------GaGKSTLln~Ltg~ 47 (406)
..+|+|+|.+ |+|||||+|.+++.
T Consensus 19 ~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 19 TYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred eeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 4799999999 99999999999984
No 263
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.95 E-value=4e-06 Score=76.15 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=27.5
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|-+++|+.++|+||||||||||+++|+|.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999999999995
No 264
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.95 E-value=1.9e-06 Score=78.48 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=27.4
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+..+.+|++++|+||||||||||+++|+|.
T Consensus 16 l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 16 VDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 445788999999999999999999999997
No 265
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.95 E-value=4.6e-06 Score=73.71 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCC-C-CCCCccccCCceeE
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~-~-~~~p~~T~~p~~G~ 65 (406)
+|..++|+||||||||||+++|++.... . ...+.+|..|..|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge 48 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE 48 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc
Confidence 4789999999999999999999987431 1 34556677776664
No 266
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.95 E-value=1.3e-05 Score=71.22 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEE--cC-CcchhhhhhhccCCCCcCceeEEEeecccc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN--IP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~--v~-g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~ 99 (406)
...+|.++|.+|||||||++.+++..... +..+..+....+. +. +. ...+.++|++|..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~ 80 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSS---------------FVNFQIWDFPGQM 80 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTT---------------SCCEEEEECCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCC---------------eeEEEEEECCCCH
Confidence 35799999999999999999999863221 1112223333322 21 21 2358999999954
Q ss_pred ccccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 100 RGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 100 ~~~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
.... ........++.+|+++.|+|+.
T Consensus 81 ~~~~----~~~~~~~~~~~~~~~i~v~d~~ 106 (196)
T 3llu_A 81 DFFD----PTFDYEMIFRGTGALIYVIDAQ 106 (196)
T ss_dssp CTTC----TTCCHHHHHHTCSEEEEEEETT
T ss_pred HHHh----hhhhcccccccCCEEEEEEECC
Confidence 3211 1100035567899998888763
No 267
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.95 E-value=3.9e-06 Score=75.05 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=24.6
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.+|++++|+||||||||||+++|+|.
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 456899999999999999999999997
No 268
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.94 E-value=7.8e-06 Score=81.59 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=24.0
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+.+| .++|+|+||||||||+++|.+.
T Consensus 57 ~~~~G-~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 57 ELGGG-FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp ECCSS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 46688 9999999999999999999665
No 269
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.94 E-value=2.8e-06 Score=81.95 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=35.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
+|++++|+||||||||||++.|+|. ..|+.|.|.+.|.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl-----------l~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY-----------YQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH-----------HHTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH-----------HHhcCCEEEEEeecC
Confidence 5899999999999999999999999 778899998877653
No 270
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.93 E-value=2.3e-06 Score=83.71 Aligned_cols=28 Identities=32% Similarity=0.649 Sum_probs=24.9
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+..+.+++|+|+||+|||||++.|++.
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999854
No 271
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.92 E-value=1.3e-06 Score=90.45 Aligned_cols=84 Identities=20% Similarity=0.163 Sum_probs=59.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+|+++|.+|+|||||++.|++........|+.|.+.....+.+++. ..++++||||......
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g----------------~~i~~iDTPGhe~f~~ 67 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG----------------EKITFLDTPGHAAFSA 67 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS----------------SCCBCEECSSSCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC----------------CEEEEEECCChHHHHH
Confidence 457899999999999999999987655566777787776666555321 1378999999543221
Q ss_pred CCCCCcchhhhhHHhhhchhhhhcccC
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
.....++.+|+++.|+|+..
T Consensus 68 -------~~~~~~~~aD~vILVVDa~d 87 (537)
T 3izy_P 68 -------MRARGTQVTDIVILVVAADD 87 (537)
T ss_dssp -------SBBSSSBSBSSCEEECBSSS
T ss_pred -------HHHHHHccCCEEEEEEECCC
Confidence 11233466888888888753
No 272
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.92 E-value=2.9e-06 Score=86.94 Aligned_cols=82 Identities=24% Similarity=0.303 Sum_probs=52.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeec
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLA-------IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~-------~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~ 96 (406)
..+++++|..|+|||||++.|+|.. ...+..++.|++.....+.+++. .+.++|+|
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~-----------------~i~iiDtP 81 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENY-----------------RITLVDAP 81 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTE-----------------EEEECCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCE-----------------EEEEEECC
Confidence 4689999999999999999999976 12234556666665555555442 48999999
Q ss_pred cccccccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 97 GLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 97 gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
|... +...+...++.+|+++.|+|+.
T Consensus 82 Gh~~-------~~~~~~~~~~~aD~~ilVvda~ 107 (482)
T 1wb1_A 82 GHAD-------LIRAVVSAADIIDLALIVVDAK 107 (482)
T ss_dssp SHHH-------HHHHHHHHTTSCCEEEEEEETT
T ss_pred ChHH-------HHHHHHHHHhhCCEEEEEEecC
Confidence 9643 1223345567788888888875
No 273
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.92 E-value=1.8e-06 Score=94.75 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=24.6
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHH
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Lt 45 (406)
.-.++.|+++||+|+||||||||++.|+
T Consensus 662 sl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 662 DVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3467789999999999999999999853
No 274
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.91 E-value=5.7e-06 Score=81.48 Aligned_cols=63 Identities=21% Similarity=0.090 Sum_probs=38.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccC-CceeEEEcC-Ccchhhh--h-hhccCCCCcCceeEEEeec
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-PNEARVNIP-DERFEWL--C-QLFKPKSAVPAFLEIHDIA 96 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~-p~~G~i~v~-g~~~~~l--~-~~~~p~~~~~~~i~lvD~~ 96 (406)
..|++++|+|+||||||||+|+|+|. .. |..|.|.+. |...... . ..+.|+ ...++|++
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~-----------~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q-----~~~l~dtp 276 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGL-----------QNEILTNDVSNVSGLGQHTTTAARLYHFPH-----GGDVIDSP 276 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCC-----------SSCCCCC-------------CCCEEEECTT-----SCEEEECH
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcc-----------ccccccCCccccCCCCccceEEEEEEEECC-----CCEecCcc
Confidence 36889999999999999999999998 55 777777764 4321100 0 122222 23578998
Q ss_pred cccc
Q 015465 97 GLVR 100 (406)
Q Consensus 97 gl~~ 100 (406)
|+..
T Consensus 277 gv~e 280 (358)
T 2rcn_A 277 GVRE 280 (358)
T ss_dssp HHHT
T ss_pred cHHH
Confidence 8765
No 275
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.91 E-value=2e-06 Score=94.06 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=24.5
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHH
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Lt 45 (406)
.-.++.|+++||+|+||||||||++.|+
T Consensus 644 sl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 644 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3457789999999999999999999854
No 276
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.90 E-value=5.7e-06 Score=74.73 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=39.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCC-C-CCCCccccCCceeEEEcCCcc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEARVNIPDER 72 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~-~-~~~p~~T~~p~~G~i~v~g~~ 72 (406)
+|..++|+||+|||||||++.|.+.... . ...+.||+.|..|. ++|.+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~ 67 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKE 67 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSS
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--ecccc
Confidence 5789999999999999999999987542 2 56778899998887 55554
No 277
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.90 E-value=3.9e-06 Score=80.87 Aligned_cols=40 Identities=33% Similarity=0.367 Sum_probs=34.3
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccC--CceeEEEc---CCc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--PNEARVNI---PDE 71 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~--p~~G~i~v---~g~ 71 (406)
...|+++||+|+||||||||+++|+|. .. |+.|.+.+ +|.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~-----------l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQAL-----------LSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHH-----------HTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH-----------HhhCCCCCeEEEEecCCc
Confidence 367899999999999999999999997 55 78888877 654
No 278
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.90 E-value=6.9e-06 Score=89.99 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=40.1
Q ss_pred CCceEeecCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc-----ccchHHHHHHHHHHHHHh------hCCC
Q 015465 131 DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWL------QDGK 199 (406)
Q Consensus 131 ~~~il~ld~~~dP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~-----~h~~~~v~~l~~~i~~~L------~~g~ 199 (406)
+|.++++| ||++++|+.+.+.++.- +.+....+. +|++..+.. ||+| ..| ..|+
T Consensus 826 ~p~LLILD---EPTsGLD~~~~~~L~~l----------L~~L~~~G~TVIvI~HdL~~i~~-ADrI-ivLgp~gg~~~G~ 890 (916)
T 3pih_A 826 GRTLYILD---EPTVGLHFEDVRKLVEV----------LHRLVDRGNTVIVIEHNLDVIKN-ADHI-IDLGPEGGKEGGY 890 (916)
T ss_dssp SSEEEEEE---STTTTCCHHHHHHHHHH----------HHHHHHTTCEEEEECCCHHHHTT-CSEE-EEEESSSGGGCCE
T ss_pred CCCEEEEE---CCCCCCCHHHHHHHHHH----------HHHHHhcCCEEEEEeCCHHHHHh-CCEE-EEecCCCCCCCCE
Confidence 35799999 99999999885443322 222222222 399987654 8988 667 7788
Q ss_pred ccccCC
Q 015465 200 DVRLGD 205 (406)
Q Consensus 200 ~~~~~~ 205 (406)
++..|+
T Consensus 891 Iv~~Gt 896 (916)
T 3pih_A 891 IVATGT 896 (916)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 887764
No 279
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.89 E-value=4.4e-06 Score=86.17 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=36.9
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCc
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~ 71 (406)
.+..|..++|+||||||||||+++|+|. +.|+.|.+.+.|.
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~~~-----------i~~~~giitied~ 296 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIMMF-----------IPPDAKVVSIEDT 296 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHGGG-----------SCTTCCEEEEESS
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhh-----------CCCCCCEEEEcCc
Confidence 3567889999999999999999999999 7789999998875
No 280
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.88 E-value=4.8e-06 Score=80.29 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=27.8
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.-.+++|++++|+||||||||||+++|+|.
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 345789999999999999999999999998
No 281
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.88 E-value=1e-05 Score=72.92 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=47.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+++++|++|+|||||++.|++...... .++..|+.+. . + ....+.++|+||......
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~---~---~------------~~~~~~l~Dt~G~~~~~~ 70 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA---D---Y------------DGSGVTLVDFPGHVKLRY 70 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET---T---G------------GGSSCEEEECCCCGGGTH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEE---E---e------------eCceEEEEECCCcHHHHH
Confidence 46899999999999999999998753210 0112222211 0 0 012489999999754321
Q ss_pred CCCCCcchhhhhHHh----hhchhhhhccc
Q 015465 104 EGQGLGNSFLSHIRA----VDGIFHVLRAF 129 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~----ad~ll~vvda~ 129 (406)
.....++. +|++++|+|+.
T Consensus 71 -------~~~~~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 71 -------KLSDYLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp -------HHHHHHHHHGGGEEEEEEEEETT
T ss_pred -------HHHHHHHhccccCCEEEEEEECC
Confidence 11222333 78888887774
No 282
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.87 E-value=9.7e-06 Score=82.10 Aligned_cols=83 Identities=19% Similarity=0.143 Sum_probs=53.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCC-------------------------------CCccccCCceeEEEcCCc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAEN-------------------------------FPFCTIEPNEARVNIPDE 71 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~-------------------------------~p~~T~~p~~G~i~v~g~ 71 (406)
....++++|.+|+|||||++.|++....+.. .++.|++.....+...+
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~- 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK- 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-
Confidence 4579999999999999999999655321110 12233333222222222
Q ss_pred chhhhhhhccCCCCcCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 72 RFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 72 ~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
..+.++|+||..+. ...+...++.+|+++.|+|+.
T Consensus 95 ----------------~~~~iiDTPGh~~f-------~~~~~~~~~~aD~~ilVVDa~ 129 (439)
T 3j2k_7 95 ----------------KHFTILDAPGHKSF-------VPNMIGGASQADLAVLVISAR 129 (439)
T ss_pred ----------------eEEEEEECCChHHH-------HHHHHhhHhhCCEEEEEEECC
Confidence 25899999996432 223445677899999999885
No 283
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.86 E-value=4.9e-06 Score=85.03 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=38.3
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcc
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (406)
..-.+.+|.+++|+|+||||||||++.|+|. ..++.|.|.+.+.+
T Consensus 286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl-----------l~~~~G~V~l~g~D 330 (503)
T 2yhs_A 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQ-----------FEQQGKSVMLAAGD 330 (503)
T ss_dssp CCCCSCTTEEEEEECCTTSSHHHHHHHHHHH-----------HHHTTCCEEEECCC
T ss_pred ceeeccCCeEEEEECCCcccHHHHHHHHHHH-----------hhhcCCeEEEecCc
Confidence 3345778999999999999999999999998 67888998886544
No 284
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.84 E-value=3.5e-06 Score=82.13 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=35.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (406)
.+|.+++|+|||||||||+++.|+|. ..|+.|.|.+.|.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~-----------l~~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW-----------LKNHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH-----------HHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-----------HHhcCCEEEEEeec
Confidence 57899999999999999999999998 77888888876654
No 285
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.82 E-value=3.7e-06 Score=87.12 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=56.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCC----------------------CCCCccccCCceeEEEcCCcchhhhhhhcc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA----------------------ENFPFCTIEPNEARVNIPDERFEWLCQLFK 81 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~----------------------~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~ 81 (406)
-..|+|+|.+|||||||++.|++....+ ...++.|+......+.+.+.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~---------- 82 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDY---------- 82 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTE----------
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCE----------
Confidence 4589999999999999999996321111 01134445555555554432
Q ss_pred CCCCcCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccC
Q 015465 82 PKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 82 p~~~~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
.+.++||||.... .......++.+|+++.|+|+..
T Consensus 83 -------~i~liDTPG~~df-------~~~~~~~l~~aD~allVvDa~~ 117 (528)
T 3tr5_A 83 -------LINLLDTPGHADF-------TEDTYRTLTAVDSALMVIDAAK 117 (528)
T ss_dssp -------EEEEECCCCSTTC-------CHHHHHGGGGCSEEEEEEETTT
T ss_pred -------EEEEEECCCchhH-------HHHHHHHHHhCCEEEEEEeCCC
Confidence 4899999997542 2344566788999999998853
No 286
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.78 E-value=6e-05 Score=82.68 Aligned_cols=28 Identities=21% Similarity=0.161 Sum_probs=24.9
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+..|..++|+|||||||||||+++.+.
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 3567999999999999999999999754
No 287
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.77 E-value=7.1e-06 Score=79.36 Aligned_cols=27 Identities=37% Similarity=0.413 Sum_probs=25.9
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.+|+++||+|+||||||||+++|+|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 678999999999999999999999998
No 288
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.77 E-value=1.5e-05 Score=71.09 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~ 48 (406)
+.+|+.++|+|+|||||||++++|++..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5678999999999999999999999983
No 289
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.76 E-value=1.5e-05 Score=72.12 Aligned_cols=44 Identities=25% Similarity=0.221 Sum_probs=33.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCC-C-CCCCccccCCceeE
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~-~-~~~p~~T~~p~~G~ 65 (406)
++|..++|+||||||||||++.|++.... . ...+.+|..|..|.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e 51 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGE 51 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcc
Confidence 46889999999999999999999998542 2 34456666666553
No 290
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.76 E-value=7e-06 Score=80.59 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN 62 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~ 62 (406)
..|+++|.+|||||||+|+|+|..........+|..|.
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 58999999999999999999998653222223444443
No 291
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.75 E-value=2.4e-05 Score=77.18 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~ 49 (406)
..++|+|++|+|||||+|.|.+...
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999988744
No 292
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.74 E-value=6.7e-06 Score=86.37 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=39.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCC-------------------------------CCCccccCCceeEEEcCCcc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAE-------------------------------NFPFCTIEPNEARVNIPDER 72 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~-------------------------------~~p~~T~~p~~G~i~v~g~~ 72 (406)
...|+|+|.+|+|||||++.|++....+. ..+++|+......+...+
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~-- 254 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK-- 254 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC--
Confidence 35799999999999999999965311110 022333333333322222
Q ss_pred hhhhhhhccCCCCcCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccC
Q 015465 73 FEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 73 ~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
..+.++||||..... ..+...++.+|++++|+|+..
T Consensus 255 ---------------~~i~iiDTPGh~~f~-------~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 255 ---------------KIYEIGDAPGHRDFI-------SGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp -------------------CCEEESSSEEE-------EECCC-------CCSEEEEEE
T ss_pred ---------------eEEEEEECCChHHHH-------HHHHHHHhhCCEEEEEEECCC
Confidence 247899999976432 123355678999999999863
No 293
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.73 E-value=2.3e-05 Score=83.88 Aligned_cols=82 Identities=22% Similarity=0.159 Sum_probs=54.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHc---CCCC---------CCC------CCccccCCceeEEEcCCcchhhhhhhccCCCCc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTK---LAIP---------AEN------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg---~~~~---------~~~------~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~ 86 (406)
.+++|+|.+|+|||||++.|++ .... ..+ .++.|+....+.+.+.+
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~---------------- 74 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG---------------- 74 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC----------------
Confidence 5899999999999999999984 3110 011 24555555555555543
Q ss_pred CceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccC
Q 015465 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
..+.++||||.... .......++.+|+++.|+|+..
T Consensus 75 -~~i~liDTPG~~df-------~~~~~~~l~~aD~~llVvDa~~ 110 (693)
T 2xex_A 75 -HRVNIIDTPGHVDF-------TVEVERSLRVLDGAVTVLDAQS 110 (693)
T ss_dssp -EEEEEECCCCCSSC-------CHHHHHHHHHCSEEEEEEETTT
T ss_pred -eeEEEEECcCCcch-------HHHHHHHHHHCCEEEEEECCCC
Confidence 24899999997642 2345567788999999998853
No 294
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.71 E-value=1.5e-05 Score=71.70 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+|+++||+|+||||||||+++|+|.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999997
No 295
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.70 E-value=1.6e-05 Score=73.81 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=24.9
Q ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 16 ~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+....+.+|.++||+||||||||||+++|+|.
T Consensus 17 ~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 17 NLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34456788999999999999999999999985
No 296
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.69 E-value=1e-05 Score=81.30 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=33.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCc
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~ 71 (406)
.+|..++|+||||||||||+++|+|. +.|..|.|.+.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~-----------l~~~~g~I~~~ed 203 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE-----------LNSSERNILTVED 203 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH-----------HCCTTSCEEEEES
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh-----------cCCCCCEEEEecc
Confidence 57889999999999999999999998 6777888776554
No 297
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.68 E-value=1.1e-05 Score=80.05 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=34.3
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCc-eeEEEcCCc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDE 71 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~-~G~i~v~g~ 71 (406)
+.+|..++|+||||||||||+++|+|. +.|+ .|.|.+.+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~-----------~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDY-----------INQTKSYHIITIED 173 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHH-----------HHHHSCCEEEEEES
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhh-----------cCcCCCcEEEEecc
Confidence 678999999999999999999999998 6777 788865443
No 298
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.67 E-value=7.3e-06 Score=84.24 Aligned_cols=82 Identities=16% Similarity=0.113 Sum_probs=54.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeecccccccc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~ 103 (406)
..+++++|.+|+|||||++.|++........++.|.+.....+.+++. .+.++||||......
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~-----------------~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG-----------------MITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS-----------------CCCEECCCTTTCCTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE-----------------EEEEEECCCcHHHHH
Confidence 457999999999999999999876444444455555544333333332 478999999654322
Q ss_pred CCCCCcchhhhhHHhhhchhhhhccc
Q 015465 104 EGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 104 ~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
. ....++.+|+++.|+++.
T Consensus 67 ~-------~~~~~~~aD~aILVVda~ 85 (501)
T 1zo1_I 67 M-------RARGAQATDIVVLVVAAD 85 (501)
T ss_dssp S-------BCSSSBSCSSEEEEEETT
T ss_pred H-------HHHHHhhCCEEEEEeecc
Confidence 1 123356688888888774
No 299
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.66 E-value=3.9e-05 Score=79.47 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=51.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCC----------------------CCCccccCCceeEEEcCCcchhhhhhhc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAE----------------------NFPFCTIEPNEARVNIPDERFEWLCQLF 80 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~----------------------~~p~~T~~p~~G~i~v~g~~~~~l~~~~ 80 (406)
...+++|+|.+|+|||||++.|++....+. ...+.|+......+...
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~----------- 80 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH----------- 80 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET-----------
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC-----------
Confidence 456899999999999999999996422110 01111111111222222
Q ss_pred cCCCCcCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccC
Q 015465 81 KPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 81 ~p~~~~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
...+.++||||.... .......++.+|+++.|+|+..
T Consensus 81 ------~~~i~liDTPG~~df-------~~~~~~~l~~aD~~IlVvDa~~ 117 (529)
T 2h5e_A 81 ------DCLVNLLDTPGHEDF-------SEDTYRTLTAVDCCLMVIDAAK 117 (529)
T ss_dssp ------TEEEEEECCCCSTTC-------CHHHHHGGGGCSEEEEEEETTT
T ss_pred ------CeEEEEEECCCChhH-------HHHHHHHHHHCCEEEEEEeCCc
Confidence 134899999997532 2234456788999999988853
No 300
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.66 E-value=5.3e-05 Score=81.36 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCce
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE 63 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~ 63 (406)
..|+++|.++||||||+|+|+|...-...-..||..|..
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~ 90 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLV 90 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceE
Confidence 589999999999999999999986633223356766643
No 301
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.63 E-value=7.5e-06 Score=80.70 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=25.8
Q ss_pred ccCC--CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 20 RFSS--HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 20 ~v~~--g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+.+ +++++|+|+||||||||+++|+|.
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 4556 899999999999999999999999
No 302
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.63 E-value=4.9e-05 Score=80.86 Aligned_cols=92 Identities=15% Similarity=0.031 Sum_probs=52.8
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhh-----hhh--hccCCC----CcCce
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKS----AVPAF 89 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-----l~~--~~~p~~----~~~~~ 89 (406)
+..+.+++|+|++|+|||||++.|++..... +..|.+ .+|..+.. ... .+.++. .-...
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~---------~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~ 75 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAK---------ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHR 75 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS---------SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEE
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCC---------Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEE
Confidence 4567899999999999999999999763211 112222 11111100 000 111111 00234
Q ss_pred eEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
+.++|+||.... .......++.+|+.+.|+|+.
T Consensus 76 ~nliDTpG~~~f-------~~~~~~~l~~ad~~ilVvD~~ 108 (665)
T 2dy1_A 76 VFLLDAPGYGDF-------VGEIRGALEAADAALVAVSAE 108 (665)
T ss_dssp EEEEECCCSGGG-------HHHHHHHHHHCSEEEEEEETT
T ss_pred EEEEeCCCccch-------HHHHHHHHhhcCcEEEEEcCC
Confidence 789999986542 223456677888888877764
No 303
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.61 E-value=1.1e-05 Score=71.08 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCc---eeEEEcCCcc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDER 72 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~---~G~i~v~g~~ 72 (406)
..++|+|++|||||||++.|+|. ..|. .|.|.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~-----------~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI-----------LRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH-----------HHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-----------hhhcCCceEEEEEcCcc
Confidence 58999999999999999999999 6676 8999988754
No 304
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.60 E-value=1.5e-05 Score=84.00 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=27.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCC-ceeEEEcCCcc
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDER 72 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p-~~G~i~v~g~~ 72 (406)
.+||+|+||||||||+++|+|. ..| ++|.|.+.|.+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl-----------~~P~~sG~vt~~g~~ 83 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV-----------ALPRGSGIVTRCPLV 83 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC-----------C-------CCCSCEE
T ss_pred eEEEECCCCChHHHHHHHHhCC-----------CCCCCCCeEEEcCEE
Confidence 4999999999999999999999 556 68888888765
No 305
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.59 E-value=1.5e-05 Score=88.45 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|..++|+||||||||||++++ |.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CcEEEEECCCCCChHHHHHHH-HH
Confidence 799999999999999999999 87
No 306
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.58 E-value=2.4e-05 Score=78.16 Aligned_cols=83 Identities=24% Similarity=0.275 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCC---C---C-----------CCccccCCceeEEEcCCcchhhhhhhccCCCC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA---E---N-----------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~---~---~-----------~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~ 85 (406)
+..+++++|.+|+|||||++.|++..... + . .++.|+.. ..+.+...
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~-------------- 73 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETA-------------- 73 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECS--------------
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccC--------------
Confidence 45789999999999999999999831000 0 0 12223332 22222211
Q ss_pred cCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhccc
Q 015465 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
...+.++|+||.... .......++.+|+++.|+|+.
T Consensus 74 -~~~~~iiDtpG~~~f-------~~~~~~~~~~aD~~ilVvda~ 109 (405)
T 2c78_A 74 -KRHYSHVDCPGHADY-------IKNMITGAAQMDGAILVVSAA 109 (405)
T ss_dssp -SCEEEEEECCCSGGG-------HHHHHHHHTTCSSEEEEEETT
T ss_pred -CeEEEEEECCChHHH-------HHHHHHHHHHCCEEEEEEECC
Confidence 134899999996542 223345567889998888875
No 307
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.58 E-value=3e-05 Score=71.83 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHH---cCCCCCCCCCccccCCceeEEEcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLT---KLAIPAENFPFCTIEPNEARVNIP 69 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Lt---g~~~~~~~~p~~T~~p~~G~i~v~ 69 (406)
++++++|+|+|||||||++++|+ |. ..|+.|.+.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~-----------~~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGL-----------QHLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC-----------CCEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC-----------eEecHHHHHHH
Confidence 36899999999999999999999 98 45666665543
No 308
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.57 E-value=6.5e-05 Score=73.73 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
...+|+|+|++|+|||||++.|++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999743
No 309
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.56 E-value=2.6e-05 Score=77.18 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=49.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccCC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~~ 105 (406)
.++++|.+|+|||||++.|+. .+.|++.....+...+ ..+.++|+||..+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~~-----------------~~i~iiDtPGh~~f---- 73 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKEG-----------------RNMVFVDAHSYPKT---- 73 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSSS-----------------SEEEEEECTTTTTC----
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecCC-----------------eEEEEEECCChHHH----
Confidence 899999999999999999982 2345554444444333 24899999996432
Q ss_pred CCCcchhhhhHHhhhchhhhhc
Q 015465 106 QGLGNSFLSHIRAVDGIFHVLR 127 (406)
Q Consensus 106 ~~l~~~~l~~l~~ad~ll~vvd 127 (406)
.......++.+|+++.|+|
T Consensus 74 ---~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 74 ---LKSLITALNISDIAVLCIP 92 (370)
T ss_dssp ---HHHHHHHHHTCSEEEEEEC
T ss_pred ---HHHHHHHHHHCCEEEEEEc
Confidence 2234455678888888777
No 310
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.56 E-value=3.7e-05 Score=82.86 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|..++|+||||||||||+++++|.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 899999999999999999999997
No 311
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.56 E-value=1.7e-05 Score=74.08 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=30.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHH---cCCCCCCCCCccccCCceeEEE
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLT---KLAIPAENFPFCTIEPNEARVN 67 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Lt---g~~~~~~~~p~~T~~p~~G~i~ 67 (406)
.+|.+|+|+|++||||||+.++|+ |. ..+++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~-----------~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNW-----------RLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTC-----------EEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCC-----------CcCCCCcee
Confidence 568999999999999999999999 88 567777766
No 312
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.55 E-value=2.9e-05 Score=68.63 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg 46 (406)
|..++|+|||||||||++++|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999999986
No 313
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.53 E-value=3e-06 Score=78.33 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcch
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (406)
..++|+||||||||||+++|+|. ..|++|.|.++|.++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~-----------~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTA-----------LIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHH-----------HSCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcc-----------cccCCCeEEECCEEc
Confidence 57899999999999999999999 678888888877654
No 314
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.50 E-value=8.7e-05 Score=79.30 Aligned_cols=83 Identities=20% Similarity=0.144 Sum_probs=51.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc---CCCC---CC------C------CCccccCCceeEEEcCCcchhhhhhhccCCCC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTK---LAIP---AE------N------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg---~~~~---~~------~------~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~ 85 (406)
-.+|+|+|.+|+|||||++.|+. .... +. + ..+.|+......+.+.+
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--------------- 76 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--------------- 76 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT---------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC---------------
Confidence 36899999999999999999983 2100 00 0 12333443333333332
Q ss_pred cCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccC
Q 015465 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
..+.++||||.... .......++.+|+++.|+|+..
T Consensus 77 --~~i~liDTPG~~df-------~~~~~~~l~~aD~~ilVvDa~~ 112 (691)
T 1dar_A 77 --HRINIIDTPGHVDF-------TIEVERSMRVLDGAIVVFDSSQ 112 (691)
T ss_dssp --EEEEEECCCSSTTC-------HHHHHHHHHHCSEEEEEEETTT
T ss_pred --eEEEEEECcCccch-------HHHHHHHHHHCCEEEEEEECCC
Confidence 34899999997542 2344567788999999998853
No 315
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.49 E-value=3.2e-05 Score=73.60 Aligned_cols=31 Identities=16% Similarity=-0.025 Sum_probs=28.6
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+.+.+|+.++|+|+||+|||||++.|+|.
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999999999998
No 316
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.49 E-value=5e-05 Score=67.99 Aligned_cols=26 Identities=15% Similarity=0.334 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+|..++|+|+|||||||++++|++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999999987
No 317
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.49 E-value=6.9e-05 Score=75.58 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~ 48 (406)
..+++++|.+|+|||||++.|++..
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhc
Confidence 3689999999999999999998764
No 318
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.47 E-value=2.8e-05 Score=70.37 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=27.2
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|.+.+|..++|+|+||||||||++.|++.
T Consensus 18 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 18 GGIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999999977
No 319
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=97.47 E-value=6.1e-05 Score=57.51 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=34.9
Q ss_pred cEEEeecCCCCeeeEEecCCCCcchhcccchhhhhhccEEEEEe
Q 015465 304 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVM 347 (406)
Q Consensus 304 li~~fT~g~~e~raw~i~~gsta~~aAg~IHsD~~kgFi~Aev~ 347 (406)
-|.+|| |+ -....+++|+|+.|+|..||+|+++.++.|+|-
T Consensus 7 ~i~v~t--P~-G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVN 47 (78)
T 3hvz_A 7 EVFVFT--PK-GDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVD 47 (78)
T ss_dssp EEEEEC--TT-SCEEEEETTCBHHHHHHHHCHHHHHTEEEEEET
T ss_pred eEEEEC--CC-CCEEEecCCCCHHHHHHHhhhhhhcceEEEEEC
Confidence 366777 33 266789999999999999999999999999983
No 320
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.44 E-value=0.00016 Score=73.21 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=44.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC---------------CCCCCCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCce
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL---------------AIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~---------------~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~ 89 (406)
.+|+|+|++++|||||+|.|.|. ....-....+|...+.|.......-.. -.|. .-..+
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~-----~~~~-~~~~~ 141 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLI-----NKPD-GKKVA 141 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEE-----ECSS-SCEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCcccc-----ccCC-CCcce
Confidence 57899999999999999999975 222222333666667787654321000 0000 11235
Q ss_pred eEEEeecccccc
Q 015465 90 LEIHDIAGLVRG 101 (406)
Q Consensus 90 i~lvD~~gl~~~ 101 (406)
+.++||+|+...
T Consensus 142 vvllDTeG~~~~ 153 (447)
T 3q5d_A 142 VLLMDTQGTFDS 153 (447)
T ss_dssp EEEEEEECCCSS
T ss_pred EEEEcCCccccc
Confidence 889999998644
No 321
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.43 E-value=4.4e-05 Score=77.66 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+++++|.+|+|||||++.|++.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999864
No 322
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.39 E-value=4.4e-05 Score=76.11 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+++++|.+|+|||||++.|++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 468999999999999999999974
No 323
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.39 E-value=3.2e-05 Score=74.79 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (406)
.+++|+|+||||||||+|.|+|... +....-+.|+.|.+.++|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~---~~~~aVi~~d~G~i~idg~~ 49 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQH---GYKIAVIENEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCC---CCCEEEECSSCCSCCEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcC---CCcEEEEEecCcccCccHHH
Confidence 5889999999999999999999731 11111135677777666543
No 324
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.39 E-value=0.00011 Score=67.10 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=27.1
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|-+.+|..++|+||||||||||++.|++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 66889999999999999999999999984
No 325
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.39 E-value=4.1e-05 Score=68.70 Aligned_cols=27 Identities=41% Similarity=0.593 Sum_probs=24.8
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
...|.+++|+|++||||||+++.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999999987
No 326
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.37 E-value=7.6e-05 Score=80.88 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+|.+++|+||||||||||+++++|.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 57899999999999999999999986
No 327
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.36 E-value=3.3e-05 Score=77.96 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+++++|..|+|||||++.|++.
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999864
No 328
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.33 E-value=7.9e-05 Score=68.36 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=25.9
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+...+|+.++|+|++||||||++++|.+.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999999985
No 329
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.33 E-value=8.6e-05 Score=64.33 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
++..++|+|+|||||||+.++|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999986
No 330
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.29 E-value=0.00012 Score=65.44 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=25.0
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+|..++|+|+|||||||+.++|++.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999999987
No 331
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.28 E-value=0.00011 Score=64.38 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=24.2
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
-.+.+| ..+|+|+||||||||+.+|.+.
T Consensus 22 ~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 22 IPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 345566 8999999999999999999876
No 332
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.28 E-value=7.5e-05 Score=64.06 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+|..++|+|+||+|||||++++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999999997
No 333
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.27 E-value=0.00013 Score=63.48 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+|..++|+|+|||||||+.+.|.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4789999999999999999999976
No 334
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.24 E-value=0.00012 Score=64.25 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=24.9
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+..|..++|+||||+|||||++++++.
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999999987
No 335
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.24 E-value=0.00019 Score=64.27 Aligned_cols=33 Identities=39% Similarity=0.502 Sum_probs=28.3
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+...+.++.+++|+|++||||||+.+.|.+.
T Consensus 12 ~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 12 SGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp --CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345566788999999999999999999999987
No 336
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.23 E-value=9.1e-05 Score=75.51 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg 46 (406)
..+++++|..|+|||||++.|++
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHH
T ss_pred eeEEEEEECCCCCHHHHHHHHHH
Confidence 35899999999999999999974
No 337
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.18 E-value=0.00018 Score=68.01 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.3
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
++.| ++|+||||+|||||+++|+|.
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 3445 999999999999999999997
No 338
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.17 E-value=0.00018 Score=75.50 Aligned_cols=87 Identities=18% Similarity=0.147 Sum_probs=49.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCC---------------CCCccccCCceeEEEcCCcchhhhhhhccCCCCcCce
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAE---------------NFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~---------------~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~ 89 (406)
..++|+|..|+|||||++.|++....+. .-.+.|+......+.+.+. ......
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~------------dg~~~~ 74 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAK------------DGNTYK 74 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECT------------TSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcC------------CCCeEE
Confidence 4799999999999999999975311110 0122333333333333210 001135
Q ss_pred eEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccC
Q 015465 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
+.++||||..... ......++.+|+.+.|+|+.+
T Consensus 75 inliDTPGh~dF~-------~ev~r~l~~aD~aILVVDa~~ 108 (600)
T 2ywe_A 75 LHLIDTPGHVDFS-------YEVSRALAACEGALLLIDASQ 108 (600)
T ss_dssp EEEECCCCSGGGH-------HHHHHHHHTCSEEEEEEETTT
T ss_pred EEEEECCCcHhHH-------HHHHHHHHhCCEEEEEEECCC
Confidence 7899999976532 233456788999999999864
No 339
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.16 E-value=0.00018 Score=70.53 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=27.6
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|.+++|.+++|+|+||||||||++.+++.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 67889999999999999999999999997
No 340
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.15 E-value=0.00035 Score=74.81 Aligned_cols=90 Identities=21% Similarity=0.137 Sum_probs=52.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCC---CCCC---------C------CCccccCCceeEEEcCCcchhhhhhhccCCCC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLA---IPAE---------N------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~---~~~~---------~------~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~ 85 (406)
-..++|+|..|+|||||++.|+... .... + ..+.|+......+.+.+.. ...
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~----------~~~ 79 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMA----------KQY 79 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCcc----------ccC
Confidence 4689999999999999999996431 1000 0 0112222222222222200 001
Q ss_pred cCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccC
Q 015465 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 86 ~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
-...+.++||||..... ......++.+|+++.|+|+..
T Consensus 80 ~~~~i~liDTPG~~df~-------~~~~~~l~~aD~aIlVvDa~~ 117 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFT-------IEVERSMRVLDGAVMVYCAVG 117 (704)
T ss_pred CceeEEEEeCCCccchH-------HHHHHHHHHCCEEEEEEeCCC
Confidence 12358999999976422 234466788999999998853
No 341
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.14 E-value=0.00017 Score=78.63 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=54.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-CC---------------CCccccCCceeEEEcCCcchhhhhhhcc-CCCCcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-EN---------------FPFCTIEPNEARVNIPDERFEWLCQLFK-PKSAVP 87 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~-~~---------------~p~~T~~p~~G~i~v~g~~~~~l~~~~~-p~~~~~ 87 (406)
.+|+|+|.+|+|||||++.|++....+ +. .++.|+......+.+.... .....+. ......
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~--~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSD--EDVKEIKQKTDGNS 97 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCH--HHHHHCSSCCCSSE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccc--cccccccccccCCC
Confidence 589999999999999999998642111 10 1223333333333332000 0000000 000112
Q ss_pred ceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccC
Q 015465 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
..+.++||||..... ......++.+|+++.|+|+..
T Consensus 98 ~~i~liDTPG~~df~-------~~~~~~l~~aD~ailVvDa~~ 133 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTIE 133 (842)
T ss_dssp EEEEEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETTT
T ss_pred ceEEEEECcCchhhH-------HHHHHHHHhCCEEEEEEeCCC
Confidence 358999999976532 244567788999999999853
No 342
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.06 E-value=0.00023 Score=74.69 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=46.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCC---------------CCccccCCceeEEEcCCcchhhhhhhccCCCCcCce
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAEN---------------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~---------------~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~ 89 (406)
..++|+|..|+|||||++.|+.....+.. -.+.|+......+.+.+. ..-...
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~------------~g~~~~ 72 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS------------DGETYQ 72 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECT------------TSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecC------------CCCeEE
Confidence 47999999999999999999763211100 112233333233322210 001135
Q ss_pred eEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccC
Q 015465 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 90 i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
+.++||||..... ......++.+|+++.|+|+.+
T Consensus 73 l~liDTPGh~dF~-------~ev~~~l~~aD~aILVVDa~~ 106 (599)
T 3cb4_D 73 LNFIDTPGHVDFS-------YEVSRSLAACEGALLVVDAGQ 106 (599)
T ss_dssp EEEEECCCCGGGH-------HHHHHHHHHCSEEEEEEETTT
T ss_pred EEEEECCCchHHH-------HHHHHHHHHCCEEEEEEECCC
Confidence 8899999975432 234466788999999999864
No 343
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.06 E-value=0.00032 Score=62.95 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=26.5
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHc
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg 46 (406)
|-+.+|..++|+|+||+|||||++.|++
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999999999997
No 344
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.03 E-value=0.00014 Score=75.50 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=33.6
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCcee-EEE-cCCc
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-RVN-IPDE 71 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G-~i~-v~g~ 71 (406)
.+.+|+.++|+|+||||||||+++|++. ..|..| .+. +++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~-----------L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR-----------LMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH-----------HHTTCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh-----------hcccCCceEEEECCc
Confidence 4678999999999999999999999998 667765 454 5543
No 345
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.00 E-value=0.00022 Score=63.94 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=31.7
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCC-C-CCCCccccCCceeE
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~-~-~~~p~~T~~p~~G~ 65 (406)
..+|..++|+|++||||||+.+.|...... . ...+.+|+.|..|.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e 55 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKE 55 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCC
Confidence 346889999999999999999999865321 1 12345566665443
No 346
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.98 E-value=0.00023 Score=74.69 Aligned_cols=97 Identities=19% Similarity=0.125 Sum_probs=49.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcchhhhhhhc-cCC--CCcCceeEEEeecccccc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF-KPK--SAVPAFLEIHDIAGLVRG 101 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~-~p~--~~~~~~i~lvD~~gl~~~ 101 (406)
.+++|+|.+|+|||||++.|++...........| ++.|...+.-.......... ... ......+.++||||....
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT--~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGIT--QHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC----CC--CBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCccccCCcee--cccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 5899999999999999999997632111111222 23333222100000000000 000 000124899999997543
Q ss_pred ccCCCCCcchhhhhHHhhhchhhhhcccC
Q 015465 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 102 ~~~~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
.... ...++.+|+++.|+|+.+
T Consensus 84 ~~~~-------~r~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 84 TTLR-------KRGGALADLAILIVDINE 105 (594)
T ss_dssp TTSB-------CSSSBSCSEEEEEEETTT
T ss_pred HHHH-------HHHHhhCCEEEEEEECCC
Confidence 3211 123456788888887754
No 347
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.97 E-value=0.00038 Score=62.94 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.+++|+|++||||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 348
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.96 E-value=0.00033 Score=67.89 Aligned_cols=24 Identities=46% Similarity=0.497 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..++||+|+||||||||+++|.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999987
No 349
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.94 E-value=0.00027 Score=63.10 Aligned_cols=44 Identities=27% Similarity=0.210 Sum_probs=34.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCC-C-CCCCccccCCceeEEEcCCcc
Q 015465 27 IGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEARVNIPDER 72 (406)
Q Consensus 27 igliG~nGaGKSTLln~Ltg~~~~-~-~~~p~~T~~p~~G~i~v~g~~ 72 (406)
|.|+||+|||||||++.|...... . -..+.||+.|..|.+ +|.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~d 49 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKD 49 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCce
Confidence 679999999999999999765432 2 467889999988864 4444
No 350
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.88 E-value=0.00051 Score=61.25 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=23.6
Q ss_pred CcCccccccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 13 ~~~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.-....-.+.++..++|+|++||||||+.+.|++.
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445556778899999999999999999999865
No 351
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.88 E-value=0.00048 Score=64.84 Aligned_cols=33 Identities=21% Similarity=0.119 Sum_probs=28.9
Q ss_pred CccccccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 15 ~~~~g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
...++-+.+|..++|+|+||||||||++.+++.
T Consensus 21 d~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 21 DYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp CEEETTEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred heeECCccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 345567889999999999999999999999875
No 352
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.85 E-value=0.00048 Score=67.84 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.0
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHc
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg 46 (406)
.+..| .++|+|||||||||||++|+.
T Consensus 20 ~~~~g-~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 20 EFQSG-ITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 34566 788999999999999999983
No 353
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.84 E-value=0.00056 Score=61.07 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.++||+|+|||||||+.+.|++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999974
No 354
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.83 E-value=0.00058 Score=67.61 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=26.0
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+++|..++|+||||+|||||+++|+|.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4778999999999999999999999985
No 355
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.83 E-value=0.0003 Score=67.68 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=32.5
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~ 71 (406)
..++.+++|+|+|||||||++..|++. ..+..|.+.+.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~-----------l~~~g~kV~lv~~ 140 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKM-----------FVDEGKSVVLAAA 140 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHH-----------HHHTTCCEEEEEE
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHH-----------HHhcCCEEEEEcc
Confidence 467899999999999999999999998 5566666665443
No 356
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.80 E-value=0.00032 Score=67.11 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+|.+++++|+|||||||+++.|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999987
No 357
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.80 E-value=0.00059 Score=60.75 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+|+|+|+|||||||+.+.|++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHHHC
Confidence 47999999999999999999984
No 358
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.77 E-value=0.0016 Score=63.19 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=49.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCccccCCceeEEEcCCcchhhhhhhccCCCCcCceeEEEeeccccccccC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~~~i~lvD~~gl~~~~~~ 104 (406)
++.++|..|+|||||++.+.+...+. ......|+..+...+ . . ...+++|||+|..+....
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~-~---------------~v~LqIWDTAGQErf~~~ 62 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--S-T---------------LIDLAVMELPGQLNYFEP 62 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--C-S---------------SSCEEEEECCSCSSSCCC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--c-c---------------EEEEEEEECCCchhccch
Confidence 47899999999999999888653221 111223333333322 1 1 134899999997653210
Q ss_pred CCCCcchhhhhHHhhhchhhhhccc
Q 015465 105 GQGLGNSFLSHIRAVDGIFHVLRAF 129 (406)
Q Consensus 105 ~~~l~~~~l~~l~~ad~ll~vvda~ 129 (406)
.+ ......+.+++++.|+|..
T Consensus 63 --~l--~~~~yyr~a~~~IlV~Dit 83 (331)
T 3r7w_B 63 --SY--DSERLFKSVGALVYVIDSQ 83 (331)
T ss_dssp --SH--HHHHHHTTCSEEEEECCCS
T ss_pred --hh--hhhhhccCCCEEEEEEECC
Confidence 00 0123467888888888764
No 359
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.76 E-value=0.00058 Score=76.10 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+..+|+++|.+|+|||||++.|++.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999874
No 360
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.73 E-value=0.00078 Score=58.76 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+|+.++|+|++||||||+.+.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999976
No 361
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.65 E-value=0.00097 Score=57.00 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHH
Q 015465 25 LKIGIVGLPNVGKSTLFNTLT 45 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Lt 45 (406)
...+|+|||||||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999986
No 362
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.61 E-value=0.00061 Score=61.32 Aligned_cols=27 Identities=37% Similarity=0.358 Sum_probs=25.1
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.+|..+.|+|++||||||+.+.|.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999999999987
No 363
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.61 E-value=0.00086 Score=65.94 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.2
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
-.+.+| +++|+||||+||||++++|.+.
T Consensus 22 ~~~~~g-~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 22 LNFPEG-VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEcCC-eEEEECCCCCChhHHHHHHHHh
Confidence 345677 9999999999999999999864
No 364
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.60 E-value=0.001 Score=66.81 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=25.0
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcCC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~~ 48 (406)
+..+..++|+||||||||||+++|.+..
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4567899999999999999999999873
No 365
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.60 E-value=0.004 Score=64.60 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=53.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcCCCC----------------C------CCCCccccCCceeEEEcCCcchhhhhhhcc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP----------------A------ENFPFCTIEPNEARVNIPDERFEWLCQLFK 81 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~~~~----------------~------~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~ 81 (406)
-..|||||..++|||||.-+|+-..-. . .--.+-|+....-.+.+.+.
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~---------- 100 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDR---------- 100 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTE----------
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCE----------
Confidence 358999999999999999998521100 0 01122334444444444432
Q ss_pred CCCCcCceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccC
Q 015465 82 PKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (406)
Q Consensus 82 p~~~~~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~ 130 (406)
.+.++||||..+.. ....+.++.+|..+.|+||.+
T Consensus 101 -------~iNlIDTPGHvDF~-------~Ev~raL~~~DgAvlVvda~~ 135 (548)
T 3vqt_A 101 -------VVNLLDTPGHQDFS-------EDTYRVLTAVDSALVVIDAAK 135 (548)
T ss_dssp -------EEEEECCCCGGGCS-------HHHHHHHHSCSEEEEEEETTT
T ss_pred -------EEEEEeCCCcHHHH-------HHHHHHHHhcCceEEEeecCC
Confidence 48999999987654 345677899999999999854
No 366
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.60 E-value=0.00089 Score=61.86 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 015465 27 IGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 27 igliG~nGaGKSTLln~Ltg~ 47 (406)
++|+||||+|||||+++|++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999987
No 367
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.56 E-value=0.0013 Score=57.62 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=24.4
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+|..+.|+|++||||||+.+.|...
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999999999999999876
No 368
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.53 E-value=0.0011 Score=57.80 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg 46 (406)
+|+.|+|+|+|||||||+.+.|+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999984
No 369
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.50 E-value=0.0011 Score=58.88 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
...|+|+|++||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999865
No 370
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.49 E-value=0.00095 Score=64.59 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=34.0
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcc
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (406)
.+.++.+++++|+||+||||++..|++. ..+..|.+.+.+.+
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~-----------l~~~g~kVllid~D 142 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANY-----------YAELGYKVLIAAAD 142 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHH-----------HHHTTCCEEEEECC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH-----------HHHCCCeEEEEeCC
Confidence 4667899999999999999999999988 55666676665443
No 371
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.45 E-value=0.0012 Score=61.93 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 015465 27 IGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 27 igliG~nGaGKSTLln~Ltg~ 47 (406)
++|+||||+|||||+++|++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999987
No 372
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.41 E-value=0.0014 Score=63.25 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=23.6
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+.+| ..+|+|+||||||||+.+|...
T Consensus 21 ~~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 21 GFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp ECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred ecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 35567 9999999999999999999855
No 373
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.40 E-value=0.00098 Score=62.18 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|..++|+|++||||||+.++|++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999999875
No 374
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.38 E-value=0.0021 Score=64.11 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=24.3
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHH
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Lt 45 (406)
|-+.+|..+.|+|+||+|||||++.|+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 668899999999999999999999553
No 375
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.37 E-value=0.0016 Score=67.22 Aligned_cols=30 Identities=23% Similarity=0.239 Sum_probs=27.8
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
-|.+.+|.+++|+|+||+|||||++.++|.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999999997
No 376
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.35 E-value=0.0018 Score=61.66 Aligned_cols=26 Identities=23% Similarity=0.064 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+.+|||+|++|||||||.+.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999987
No 377
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.34 E-value=0.0015 Score=63.22 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..++|+||||+|||||+++|+|.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999999999987
No 378
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.32 E-value=0.0024 Score=56.06 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.5
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
...+..++|+|++||||||+.+.|...
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 445789999999999999999999854
No 379
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.28 E-value=0.0011 Score=63.39 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCCcc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (406)
+|.+++++|+||+||||+...|++. ..+..|.+.+.|.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~-----------~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY-----------YKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH-----------HHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-----------HHHcCCeEEEecCC
Confidence 6889999999999999999999998 55566777665543
No 380
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.27 E-value=0.0022 Score=54.73 Aligned_cols=20 Identities=40% Similarity=0.522 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 015465 25 LKIGIVGLPNVGKSTLFNTL 44 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~L 44 (406)
+.|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 381
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.23 E-value=0.0027 Score=55.51 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.++..|.|.|++||||||+.+.|...
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999753
No 382
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.21 E-value=0.0025 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.099 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..|+|.|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999754
No 383
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.20 E-value=0.0024 Score=66.14 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccccCCceeEEEcCC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g 70 (406)
+|..+.|+||||+|||||.++|++. ..+..+.+.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~-----------l~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS-----------LGRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH-----------HTCEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCeEEEEecc
Confidence 5789999999999999999999988 556667776655
No 384
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.19 E-value=0.0027 Score=58.18 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=25.3
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 20 ~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+.+|..|.|.|++||||||+.+.|...
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3557899999999999999999999876
No 385
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.18 E-value=0.0028 Score=55.23 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|..|.|.|++||||||+.+.|...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999753
No 386
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.18 E-value=0.0029 Score=54.59 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg 46 (406)
..|.|.|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 387
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.17 E-value=0.0032 Score=55.69 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+|..|+|.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999976
No 388
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.15 E-value=0.0029 Score=57.52 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=24.3
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHc
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg 46 (406)
.|-+.+|..++|+|+||+|||||...++.
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46688999999999999999999665543
No 389
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.14 E-value=0.0015 Score=63.15 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc-CCCCCCCCCccccCCceeEEEcCCcc
Q 015465 26 KIGIVGLPNVGKSTLFNTLTK-LAIPAENFPFCTIEPNEARVNIPDER 72 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg-~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (406)
.+.|.||||+||||++++|++ . ..|+.|.+.+++..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l-----------~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI-----------FGPGVYRLKIDVRQ 74 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH-----------SCTTCCC-------
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-----------cCCCCCeEEeccee
Confidence 389999999999999999999 4 34666777666543
No 390
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.13 E-value=0.0033 Score=54.36 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+..|.|.|++||||||+-+.|...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999865
No 391
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.11 E-value=0.0031 Score=57.73 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+.+++|+|++||||||+.+.|++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999863
No 392
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.09 E-value=0.0031 Score=56.68 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHH
Q 015465 25 LKIGIVGLPNVGKSTLFNTLT 45 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Lt 45 (406)
...+|+|+|||||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 478999999999999999985
No 393
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.05 E-value=0.0032 Score=61.10 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHH
Q 015465 25 LKIGIVGLPNVGKSTLFNTLT 45 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Lt 45 (406)
...+|+|||||||||++.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 477899999999999999874
No 394
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.04 E-value=0.0034 Score=55.29 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.|+|+|++||||||+.+.|...
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHHh
Confidence 36899999999999999999874
No 395
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.03 E-value=0.0042 Score=55.01 Aligned_cols=26 Identities=31% Similarity=0.301 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.....|+|.|++||||||+.+.|...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999854
No 396
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.02 E-value=0.0036 Score=55.00 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
-..++|+|++|||||||++.|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 358999999999999999999876
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.01 E-value=0.0036 Score=56.29 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+..|+|.|++||||||+.+.|...
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc
Confidence 3578999999999999999999864
No 398
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.98 E-value=0.004 Score=55.17 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|..|.|.|++||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999999999864
No 399
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.93 E-value=0.0045 Score=55.06 Aligned_cols=26 Identities=31% Similarity=0.222 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+|..|+|.|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999753
No 400
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.93 E-value=0.0043 Score=54.35 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.++..|+|+|++||||||+.+.|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999853
No 401
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.87 E-value=0.005 Score=54.81 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+|..|+|.|++||||||+.+.|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999853
No 402
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.86 E-value=0.0047 Score=53.87 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+..|+|.|++||||||+-+.|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
No 403
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.86 E-value=0.0026 Score=55.96 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.5
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.++..|+|.|++||||||+.+.|...
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999999854
No 404
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.86 E-value=0.004 Score=55.74 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
-..++|+|++|||||||++.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 405
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.85 E-value=0.03 Score=57.35 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.1
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
++.| +.|+||||+|||||+++|++.
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHH
Confidence 3444 899999999999999999987
No 406
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.82 E-value=0.0035 Score=58.14 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=24.2
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
...+..+.|+|+|||||||+.+.|...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 456789999999999999999999875
No 407
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.80 E-value=0.0054 Score=55.23 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
++..|.|+|++||||||+.+.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999754
No 408
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.80 E-value=0.0049 Score=55.18 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
++|+|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999643
No 409
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.76 E-value=0.0061 Score=53.99 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..++.|+|+|++||||||+.+.|...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999753
No 410
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.75 E-value=0.0053 Score=55.02 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
++|+|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 411
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.71 E-value=0.0062 Score=53.62 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+|+|+|++||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999999864
No 412
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.68 E-value=0.0058 Score=53.06 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+..|.|+|++||||||+.+.|...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999843
No 413
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.66 E-value=0.0063 Score=55.13 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+..|.|+|++||||||+.+.|+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999853
No 414
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.66 E-value=0.0065 Score=52.87 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+..|.|+|++||||||+-+.|+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999754
No 415
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.62 E-value=0.0058 Score=64.58 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=50.0
Q ss_pred EEEEEcCCCCCHHHHHHHH---HcCCCCCCCCC---------------ccccCCceeEEEcCCcchhhhhhhccCCCCcC
Q 015465 26 KIGIVGLPNVGKSTLFNTL---TKLAIPAENFP---------------FCTIEPNEARVNIPDERFEWLCQLFKPKSAVP 87 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~L---tg~~~~~~~~p---------------~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~~ 87 (406)
.|||+|..++|||||.-.| +|.-....... +-|+....-.+.+. .
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~-----------------~ 66 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE-----------------N 66 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS-----------------S
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC-----------------C
Confidence 5799999999999999988 44421110000 11111111111111 2
Q ss_pred ceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCC
Q 015465 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED 131 (406)
Q Consensus 88 ~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~ 131 (406)
..+.++||||-.+.. ....+.++.+|..+.|+||.+.
T Consensus 67 ~~iNlIDTPGH~DF~-------~Ev~raL~~~DgavlVVDa~~G 103 (638)
T 3j25_A 67 TKVNIIDTPGHMDFL-------AEVYRSLSVLDGAILLISAKDG 103 (638)
T ss_dssp CBCCCEECCCSSSTH-------HHHHHHHTTCSEEECCEESSCT
T ss_pred EEEEEEECCCcHHHH-------HHHHHHHHHhCEEEEEEeCCCC
Confidence 347899999976543 3455778889999999998643
No 416
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.60 E-value=0.0064 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..|.|.|++||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 417
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.59 E-value=0.0074 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+..|+|.|++||||||+.+.|...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 418
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.59 E-value=0.0054 Score=53.44 Aligned_cols=24 Identities=46% Similarity=0.537 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.+|+|+|++||||||+-+.|...
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 419
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.54 E-value=0.0065 Score=63.68 Aligned_cols=27 Identities=26% Similarity=0.424 Sum_probs=24.9
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+..|..+.|+||||+|||||+++|++.
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 456789999999999999999999998
No 420
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.54 E-value=0.0072 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.|+|.|++||||||+.+.|...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999854
No 421
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.50 E-value=0.0078 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.|+|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999863
No 422
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.49 E-value=0.0034 Score=55.97 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~ 47 (406)
.|+|.|++||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 423
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.49 E-value=0.0076 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.|+|.|++||||||+.+.|...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999853
No 424
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.48 E-value=0.0059 Score=52.92 Aligned_cols=25 Identities=32% Similarity=0.203 Sum_probs=17.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
++..|.|.|++||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999743
No 425
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.45 E-value=0.0086 Score=55.14 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.++..|+|.|++||||||+.+.|...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999743
No 426
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.44 E-value=0.0067 Score=52.49 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+.|+|+|||||||+-+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 427
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.41 E-value=0.0088 Score=55.11 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+.+++|.||+||||||+.+.|...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999854
No 428
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.38 E-value=0.0076 Score=54.09 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+++|+|.+|||||||++.+++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 429
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.38 E-value=0.0086 Score=56.76 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+..+.|.|+|||||||+.+.|...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999854
No 430
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.36 E-value=0.0079 Score=54.21 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+..|.|+|++||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
No 431
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.33 E-value=0.0092 Score=53.72 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
++.|.|+|++||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999754
No 432
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.30 E-value=0.0089 Score=51.22 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..|+|.|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999753
No 433
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.29 E-value=0.0095 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
++|.|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 434
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.26 E-value=0.01 Score=55.18 Aligned_cols=24 Identities=46% Similarity=0.641 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg 46 (406)
.+..|.|+|+|||||||+.+.|..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999975
No 435
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.20 E-value=0.0093 Score=55.35 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+.|+||||||||||-+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999864
No 436
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.18 E-value=0.011 Score=53.34 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|++.|+|||||||+|.-+.|+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999855
No 437
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.15 E-value=0.011 Score=52.11 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~ 47 (406)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999874
No 438
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.13 E-value=0.011 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.|.|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 439
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.11 E-value=0.0062 Score=59.71 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=26.5
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|-+.+|..+.|.||||+|||||+..++..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999999876
No 440
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.10 E-value=0.011 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..++|+|++|||||||++.|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999865
No 441
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.07 E-value=0.0048 Score=58.94 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.+++++|+||+||||++..|++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999999987
No 442
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.05 E-value=0.015 Score=52.93 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=22.9
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+..+|.|+|||||||+|.-+.|+..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 455678899999999999999999854
No 443
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.98 E-value=0.014 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
++++|.|++||||||+-+.|...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 444
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.95 E-value=0.014 Score=53.71 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.-+.|+||||+||||+.++|++.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45889999999999999999976
No 445
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.89 E-value=0.0081 Score=60.29 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
++.+++++|++|+||||+...|++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999988
No 446
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.87 E-value=0.013 Score=57.33 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=22.8
Q ss_pred cCCCcE--EEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLK--IGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~--igliG~nGaGKSTLln~Ltg~ 47 (406)
+.+|.. ++|+|++|+||||+.++|++.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 445555 999999999999999999875
No 447
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.85 E-value=0.017 Score=52.50 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+..|.|+|++||||||+.+.|...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999854
No 448
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.84 E-value=0.015 Score=57.57 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=27.4
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+-.+.+|++++|+|++|+|||||++.|++.
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4456778999999999999999999999875
No 449
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.72 E-value=0.017 Score=54.80 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=24.3
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.++..+.|.||||+|||||.+++++.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 456778999999999999999999986
No 450
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.70 E-value=0.016 Score=53.18 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=20.9
Q ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 17 ~~g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..|....|..|.|.|++||||||+.+.|...
T Consensus 18 ~~~~m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 18 GPGSMARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp -----CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cCccccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3355567899999999999999999999865
No 451
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.64 E-value=0.012 Score=59.10 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
++.+++++|+|||||||++..|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999865
No 452
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.60 E-value=0.012 Score=56.82 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 015465 27 IGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 27 igliG~nGaGKSTLln~Ltg~ 47 (406)
+.|.||||+||||+++++++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999986
No 453
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.48 E-value=0.022 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg 46 (406)
...|+|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999983
No 454
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.41 E-value=0.02 Score=56.10 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHH
Q 015465 25 LKIGIVGLPNVGKSTLFNTLT 45 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Lt 45 (406)
....|+|+|||||||++.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999985
No 455
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.39 E-value=0.022 Score=50.62 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
...|||.|.+||||||+-+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999999854
No 456
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.34 E-value=0.024 Score=53.35 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg 46 (406)
..|.|.|+|||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999985
No 457
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.32 E-value=0.025 Score=52.13 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg 46 (406)
..+|||.|++||||||+-+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 458
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.31 E-value=0.029 Score=47.97 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+..+.|.|++|+||||+.+.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999865
No 459
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.31 E-value=0.023 Score=55.45 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=25.2
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|-+.+|..+.|.|+||+|||||...++..
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999998877654
No 460
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.28 E-value=0.027 Score=50.42 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+..+.|.||+|+|||||.+.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999865
No 461
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.24 E-value=0.012 Score=57.93 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+..+.|+|++||||||+++.|+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4668899999999999999999876
No 462
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.12 E-value=0.028 Score=51.59 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+..||+|+|||||||+-+.|...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999753
No 463
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.11 E-value=0.0095 Score=61.20 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.2
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.+| ..+|+|+||||||||+.+|...
T Consensus 58 f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 58 LGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred cCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 4456 8899999999999999999554
No 464
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.02 E-value=0.029 Score=52.60 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
++..+.|.||||+||||+.+++++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4678999999999999999999976
No 465
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.88 E-value=0.033 Score=49.10 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+.|.|++|+|||||.+++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999875
No 466
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.88 E-value=0.027 Score=61.13 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.++..+.|+||||+|||||.++|++.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 567889999999999999999999997
No 467
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=93.86 E-value=0.16 Score=54.16 Aligned_cols=90 Identities=18% Similarity=0.115 Sum_probs=51.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHH---cCCC---CCC------------CCCccccCCceeEEEcCCcchhhhhhhccCCCCc
Q 015465 25 LKIGIVGLPNVGKSTLFNTLT---KLAI---PAE------------NFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Lt---g~~~---~~~------------~~p~~T~~p~~G~i~v~g~~~~~l~~~~~p~~~~ 86 (406)
..|||||.-++|||||.-.|. |... .+. ---+-|+....-++.+.+.+ .+.-
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~----------~~~~ 83 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSR----------GQYD 83 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTT----------SCSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCc----------CCCC
Confidence 479999999999999999885 3200 000 00011111111111111110 0011
Q ss_pred CceeEEEeeccccccccCCCCCcchhhhhHHhhhchhhhhcccCC
Q 015465 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED 131 (406)
Q Consensus 87 ~~~i~lvD~~gl~~~~~~~~~l~~~~l~~l~~ad~ll~vvda~~~ 131 (406)
...+.++||||-.+.. ....+.++.+|..+.||||.+.
T Consensus 84 ~~~iNlIDTPGHvDF~-------~Ev~~aLr~~DgavlvVDaveG 121 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFT-------IEVERSLRVLDGAVVVFCGTSG 121 (709)
T ss_dssp CEEEEEECCCSCTTCH-------HHHHHHHHHCSEEEEEEETTTC
T ss_pred CEEEEEEeCCCCcccH-------HHHHHHHHHhCeEEEEEECCCC
Confidence 2458999999976543 3556788999999999998643
No 468
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.81 E-value=0.028 Score=54.14 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+..+.|.||+|+|||||++.+.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999876
No 469
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.79 E-value=0.037 Score=50.00 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.|..|.|-|++||||||+.+.|...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999754
No 470
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.76 E-value=0.035 Score=53.78 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+.|.||||+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999976
No 471
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.64 E-value=0.034 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+..++|.|++||||||+.+.|...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999864
No 472
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.56 E-value=0.041 Score=55.42 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=27.0
Q ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 18 ~g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+|-+.+|..+.|.|+||+|||||...+++.
T Consensus 197 ~gGl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 197 TSGFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp HSSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999999876
No 473
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.55 E-value=0.029 Score=50.99 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=21.9
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHc
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg 46 (406)
+..|..+.++|++||||||++..+..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 34688999999999999998887753
No 474
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.55 E-value=0.039 Score=51.91 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
...+.|+||||+||||+.++|++.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 357999999999999999999986
No 475
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.55 E-value=0.042 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+..+.|.||||+|||||.+++++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667999999999999999999876
No 476
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.51 E-value=0.038 Score=56.58 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLT 45 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Lt 45 (406)
+..+|+|+|++||||||+++.|+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999999
No 477
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.50 E-value=0.047 Score=52.91 Aligned_cols=29 Identities=28% Similarity=0.224 Sum_probs=26.3
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|-+++|..+.|.|+||+|||||...++..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999988864
No 478
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.47 E-value=0.045 Score=49.88 Aligned_cols=24 Identities=42% Similarity=0.463 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|..|+|-|..||||||+.+.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999999865
No 479
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.41 E-value=0.03 Score=56.23 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+++++|++|+||||+.+.|++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999875
No 480
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.35 E-value=0.028 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=18.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg 46 (406)
+.+|||.|+.||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999975
No 481
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.35 E-value=0.04 Score=47.05 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+..+.|.|++|+||||+.+.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999865
No 482
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.28 E-value=0.051 Score=50.00 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.+|..|.|.|++||||||+.+.|...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999764
No 483
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.20 E-value=0.049 Score=54.27 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.....|.|+|+|||||||+.+.|...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999999999854
No 484
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.20 E-value=0.051 Score=53.99 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=22.6
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.+..-+-|.||||+|||+|.+++++.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 334455789999999999999999986
No 485
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.18 E-value=0.041 Score=55.99 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 015465 26 KIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 26 ~igliG~nGaGKSTLln~Ltg~ 47 (406)
-+.|+||||+|||||.+++++.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999986
No 486
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.13 E-value=0.057 Score=48.79 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+|..|.+-|++||||||+.+.|...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999999764
No 487
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.12 E-value=0.032 Score=51.71 Aligned_cols=26 Identities=42% Similarity=0.474 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 22 ~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+..|.|.|+.||||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999865
No 488
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.01 E-value=0.063 Score=48.67 Aligned_cols=25 Identities=40% Similarity=0.320 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.|..|.+-|++||||||+.+.|...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999876
No 489
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.97 E-value=0.046 Score=55.35 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=23.9
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+-.|.+++|+|++|+|||||++.|.+.
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHHHHHhh
Confidence 346889999999999999999999765
No 490
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.93 E-value=0.062 Score=49.05 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
...-+.|.||||+||||+.+++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999875
No 491
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.85 E-value=0.046 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+..+.|.||||+|||||++++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457889999999999999999876
No 492
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.82 E-value=0.058 Score=51.73 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=26.0
Q ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 19 g~v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
|-+++|..+.|.|+||+|||||...++..
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 56788999999999999999999988764
No 493
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.76 E-value=0.062 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHc
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTK 46 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg 46 (406)
++.++.++|+|||||||+...|+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 467999999999999999999984
No 494
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.76 E-value=0.067 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC
Q 015465 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 25 ~~igliG~nGaGKSTLln~Ltg~ 47 (406)
..+.|.|++|+||||+++.+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999765
No 495
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.72 E-value=0.071 Score=48.59 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
.|..|.+.|++||||||+.+.|...
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999865
No 496
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.54 E-value=0.058 Score=48.71 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=22.5
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+++...+.+.||||+||||+..+|+..
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 344456899999999999999999875
No 497
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.50 E-value=0.077 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHH
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLT 45 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Lt 45 (406)
..++.++|++||||||+++.|+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHH
Confidence 4688999999999999999998
No 498
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.50 E-value=0.076 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 24 g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
...+.|+||+|||||||-+.|+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999865
No 499
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.42 E-value=0.084 Score=53.05 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=23.3
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 21 v~~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+.+..-+.|.||||+|||+|.+++++.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 445567889999999999999999876
No 500
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.35 E-value=0.08 Score=47.45 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcC
Q 015465 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (406)
Q Consensus 23 ~g~~igliG~nGaGKSTLln~Ltg~ 47 (406)
+|..|.|=|..||||||+.+.|...
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4678899999999999999999864
Done!