Query 015466
Match_columns 406
No_of_seqs 134 out of 1870
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 13:07:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 3E-41 1E-45 331.4 29.5 357 1-395 83-477 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 5.4E-26 1.8E-30 220.0 25.9 329 1-381 90-434 (451)
3 3o7q_A L-fucose-proton symport 99.9 2.7E-23 9.3E-28 200.3 34.1 304 1-375 89-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 1.9E-22 6.5E-27 197.5 21.9 356 1-387 83-478 (491)
5 2gfp_A EMRD, multidrug resista 99.8 5.5E-21 1.9E-25 180.5 13.4 285 1-357 63-353 (375)
6 2cfq_A Lactose permease; trans 99.8 2.9E-19 9.8E-24 171.4 16.9 332 1-392 71-411 (417)
7 2xut_A Proton/peptide symporte 99.8 4.9E-19 1.7E-23 174.7 16.0 109 1-109 83-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 3.2E-11 1.1E-15 116.0 19.5 141 246-386 67-212 (451)
9 3o7q_A L-fucose-proton symport 99.3 4.2E-10 1.4E-14 107.8 21.2 111 244-354 64-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.3 2.6E-10 8.8E-15 111.1 19.3 139 245-383 58-199 (491)
11 2gfp_A EMRD, multidrug resista 99.1 5.6E-10 1.9E-14 104.8 14.0 143 245-387 39-181 (375)
12 2xut_A Proton/peptide symporte 99.1 3E-09 1E-13 104.5 17.8 137 247-383 60-201 (524)
13 4gc0_A D-xylose-proton symport 98.7 4.6E-07 1.6E-11 87.9 18.0 102 251-352 65-184 (491)
14 2cfq_A Lactose permease; trans 98.1 2.3E-06 7.7E-11 81.4 6.3 116 1-116 287-405 (417)
15 2g9p_A Antimicrobial peptide l 24.1 46 0.0016 16.4 1.6 13 261-273 3-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3e-41 Score=331.37 Aligned_cols=357 Identities=22% Similarity=0.282 Sum_probs=250.7
Q ss_pred CcchhhHHHHHHHHHHHHHHh------------------hcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchh
Q 015466 1 MEEGSILGGALVTFVAGLLSA------------------FSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGK 61 (406)
Q Consensus 1 ~rr~~~~~~~~~~~i~~~~~~------------------~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~ 61 (406)
|||++++++.+++.+++++++ +++|+++++++|+++|+|.|+.. +...|++|++|+++||+
T Consensus 83 GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~ 162 (491)
T 4gc0_A 83 GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGK 162 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhh
Confidence 799999999999999999998 48899999999999999998864 56778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhc--------ccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHH
Q 015466 62 WMVVFSTFWTFGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDK 133 (406)
Q Consensus 62 ~~~~~~~~~~~G~~l~~~l~~~~~--------~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~ 133 (406)
..++.+.++.+|.++++.+++... ..+.||+++.+..+|.++.++.++++||||+||..|+|.||+++.+++
T Consensus 163 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~ 242 (491)
T 4gc0_A 163 LVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRK 242 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred hHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHH
Confidence 999999999999999988877653 235799999999999999888999999999999999999999999998
Q ss_pred HHHHcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHH
Q 015466 134 IAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYG 213 (406)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (406)
..+.+..+ ++.. +.+.... .. ++.. .....+..+ +.....+...+.+...++.
T Consensus 243 ~~~~~~~~---------------~~~~--~~~~~~~-~~------~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 295 (491)
T 4gc0_A 243 IMGNTLAT---------------QAVQ--EIKHSLD-HG------RKTG-GRLLMFGVG--VIVIGVMLSIFQQFVGINV 295 (491)
T ss_dssp HHHHHHHH---------------HHHH--HHHHHHH-HH------HHHT-THHHHSCCT--HHHHHHHHHHHHHHTCHHH
T ss_pred hcCCchhH---------------HHHH--HHHHHHH-hh------hhhh-hHHHHhccc--HHHHHHHHHHHHHHhhhhH
Confidence 87643211 0000 0000000 00 0000 011111111 1111122222222222223
Q ss_pred HHHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---
Q 015466 214 IVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT--- 290 (406)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~--- 290 (406)
...+.+.+.... ..............++..++++++++++.||+|||+.++.+.....++++.+..
T Consensus 296 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 296 VLYYAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 333333222110 111223344556667888999999999999999999998877666655443332
Q ss_pred hh-hhHHHH-HHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc------hhhHH
Q 015466 291 LQ-SNILLT-ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC------HQTAA 362 (406)
Q Consensus 291 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~------~~~~~ 362 (406)
.. ...... ........+..+..++.|.+.+|+||+++|+++.|++++++++++++++++.+.+.+.. +....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~ 444 (491)
T 4gc0_A 365 TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFS 444 (491)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHH
T ss_pred cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 11 112221 22222233344556778999999999999999999999999999999998887664422 22346
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCccccccccc
Q 015466 363 ILLLEALIVLSVVVILLIPFETKGKELVNTIDG 395 (406)
Q Consensus 363 ~~~~~~~~~i~~~~~~~~~~et~~~~~~~~~~~ 395 (406)
+++++++++++.++.+++.||||||++||+++.
T Consensus 445 ~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 445 YWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 788999999999999999999999999998764
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=5.4e-26 Score=220.04 Aligned_cols=329 Identities=15% Similarity=0.191 Sum_probs=217.6
Q ss_pred CcchhhHHHHHHHHHHHHHHhh----cccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHH
Q 015466 1 MEEGSILGGALVTFVAGLLSAF----SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV 75 (406)
Q Consensus 1 ~rr~~~~~~~~~~~i~~~~~~~----a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~ 75 (406)
+||+.++++.++..++.++.++ ++|++.++++|++.|++.|.. +....++.|++|+++|++..++.+.+..+|.+
T Consensus 90 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 169 (451)
T 1pw4_A 90 NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 169 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH
Confidence 6899999999999999999999 999999999999999998865 45667899999999999999999999999999
Q ss_pred HHHHhhHHhcccch-hHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCC
Q 015466 76 SEAALAWIVMPILT-WRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN 153 (406)
Q Consensus 76 l~~~l~~~~~~~~~-Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 153 (406)
+++.++..+.+..+ ||+.|++.+++.++. ++..+++||+|++...+.+.++ +.+.
T Consensus 170 ~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~ 226 (451)
T 1pw4_A 170 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------------------KNDY 226 (451)
T ss_dssp SHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------------------CCC-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------------------cccc
Confidence 99999987767777 999999988877664 4556788999875322111000 0000
Q ss_pred CcccccccCCccccchhhhccccccccccch--hhhccC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 015466 154 DLDEEFSTSEETPLLSSARKRTTVRKSGFSS--FLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS 230 (406)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 230 (406)
+.++ ++.++ + +...++ ....++ ++.+ ...+..+.....+++...+.|.+..+.
T Consensus 227 ~~~~--~~~~~---------~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 282 (451)
T 1pw4_A 227 PDDY--NEKAE---------Q----ELTAKQIFMQYVLPNKLLW----YIAIANVFVYLLRYGILDWSPTYLKEV----- 282 (451)
T ss_dssp ---------------------------CCTHHHHHHTSSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHBTTB-----
T ss_pred cccc--hhhhh---------c----ccccccchHHHHHcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 0000 00000 0 000001 112222 2222 222333333444445544544443211
Q ss_pred ccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhh--chHHHHHHHHHHHH-HHHHHHHhhh--hhHHHHHHHHHHH
Q 015466 231 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTIMFIFVC-IFLLPLVTLQ--SNILLTALLSGAR 305 (406)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--grR~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~ 305 (406)
.+..............++.+++.++.+++.||+ |||+.+..+..+.. +....+.... +............
T Consensus 283 -----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 357 (451)
T 1pw4_A 283 -----KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 357 (451)
T ss_dssp -----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred -----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 011112222334455677889999999999999 99998877655544 3333222221 2222222222333
Q ss_pred HHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhH-HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcc
Q 015466 306 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP 381 (406)
Q Consensus 306 ~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~-g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 381 (406)
++..+..+..+.+..|.+|++.|+++.|+.+.+.++ |+.++|.+.+.+.+..+....+.+.+++++++.++..+..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566678899999999999999999999999 9999999999888876666677777888887777666654
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=2.7e-23 Score=200.33 Aligned_cols=304 Identities=13% Similarity=0.068 Sum_probs=196.6
Q ss_pred CcchhhHHHHHHHHHHHHHH---hhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 015466 1 MEEGSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS 76 (406)
Q Consensus 1 ~rr~~~~~~~~~~~i~~~~~---~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l 76 (406)
|||+.++.+.++..++.++. ++++|++.+++.|++.|++.|... ....++.|+.|+++|++..++.+.+..+|.++
T Consensus 89 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 168 (438)
T 3o7q_A 89 SYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII 168 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999 899999999999999999998764 56778999999999999999999999999999
Q ss_pred HHHhhHHhc-ccch-------------------------hHHHHHHhhHHHHHHHHHHHh--ccCCcchhhccCChhhHH
Q 015466 77 EAALAWIVM-PILT-------------------------WRWLLALSAIPAFVLLIFIVF--MPESPRYLCTKGRITDAH 128 (406)
Q Consensus 77 ~~~l~~~~~-~~~~-------------------------Wr~~f~i~~ip~~~~~~~~~~--~pESp~~l~~~~~~~~a~ 128 (406)
++.++..+. +..+ ||+.|++.+++.++..+..++ .||+++...
T Consensus 169 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--------- 239 (438)
T 3o7q_A 169 AVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH--------- 239 (438)
T ss_dssp HHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCC---------
T ss_pred HHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccc---------
Confidence 999988776 4433 999998877666554433333 455543100
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccC-hhhHHHHHHHHHHHHHH
Q 015466 129 NILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGN 207 (406)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 207 (406)
++ ++++. ....++++++ |+.+.... . .+..
T Consensus 240 ---------------------------~~----~~~~~--------------~~~~~~~~~~~~~~~~~~~-~---~~~~ 270 (438)
T 3o7q_A 240 ---------------------------SD----AKQGS--------------FSASLSRLARIRHWRWAVL-A---QFCY 270 (438)
T ss_dssp ---------------------------CC----SSTTS--------------HHHHHHHHTTCSHHHHHHH-H---HHHH
T ss_pred ---------------------------cc----ccccc--------------hhhhHHHHHhChHHHHHHH-H---HHHH
Confidence 00 00000 0001222332 33332222 2 1122
Q ss_pred HHHHHHHHHHHHhh-hccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 015466 208 SFVYYGIVLLASEL-SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLL 286 (406)
Q Consensus 208 ~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~ 286 (406)
...+++...+.+.+ ..+. .+..............++.+++.++++++.||+|||+.+..+.++..+...
T Consensus 271 ~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 340 (438)
T 3o7q_A 271 VGAQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCL 340 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 22222322222322 1110 001111222333444577888999999999999999999887766666554
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch-hhHHHHH
Q 015466 287 PLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILL 365 (406)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~-~~~~~~~ 365 (406)
......+...... .....++....++..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..+ ....+.+
T Consensus 341 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 417 (438)
T 3o7q_A 341 ISAFAGGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_dssp HHHHCCHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHH
T ss_pred HHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 4443333222222 22233334455677888889999987 899998877 778999999999998888766 4455555
Q ss_pred HHHHHHHHHH
Q 015466 366 LEALIVLSVV 375 (406)
Q Consensus 366 ~~~~~~i~~~ 375 (406)
.+++.++..+
T Consensus 418 ~~~~~~~~~~ 427 (438)
T 3o7q_A 418 PALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.90 E-value=1.9e-22 Score=197.52 Aligned_cols=356 Identities=12% Similarity=0.014 Sum_probs=190.8
Q ss_pred CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCc--chhHHHHHHHHHHHHHHHH
Q 015466 1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN--RGKWMVVFSTFWTFGSVSE 77 (406)
Q Consensus 1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~l~ 77 (406)
|||+.++.+.++..++.++.++++|++.++++|++.|++.|.. +....++.|++|+++ |+...+.++.+..+|..++
T Consensus 83 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 162 (491)
T 4aps_A 83 GARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA 162 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999998875 456678899999999 6777888999999999999
Q ss_pred HHhhHHhcccchhHHHHHHhhHHHHHHHHHHHh-ccCCcc----hhhccCChhhHHHHHHH--------------HHHHc
Q 015466 78 AALAWIVMPILTWRWLLALSAIPAFVLLIFIVF-MPESPR----YLCTKGRITDAHNILDK--------------IAQFN 138 (406)
Q Consensus 78 ~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~-~pESp~----~l~~~~~~~~a~~~l~~--------------~~~~~ 138 (406)
+.++..+.+..+||+.|++.++..++..+..+. .|+..+ -...+.+.++.++..++ ....+
T Consensus 163 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 242 (491)
T 4aps_A 163 PLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVG 242 (491)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999998888889999999987766555443332 222111 00111122233332222 11111
Q ss_pred CCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHH----H
Q 015466 139 QTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYG----I 214 (406)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 214 (406)
+.+ .++.....................+..... ....++.. ....++...+.....+.. .
T Consensus 243 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 306 (491)
T 4aps_A 243 WNS-------------LPAYINLLTIVAIAIPVFYFAWMISSVKVT--STEHLRVV-SYIPLFIAAVLFWAIEEQGSVVL 306 (491)
T ss_dssp SCC-------------TTHHHHHHHHHHHHHHHHHHHHHC--------------CT-THHHHHHHHHHHHHHHGGGGTHH
T ss_pred Ccc-------------cccchhhhhHHHHHHHHHHHHHHhhccccc--HHHHHHHH-HHHHHHHHHHHHHHHHhhccHHH
Confidence 100 000000000000000000000000000000 00000000 011111111111111111 1
Q ss_pred HHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH-----HHHHHHHHHHHHHH
Q 015466 215 VLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMT-----IMFIFVCIFLLPLV 289 (406)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~-----~~~~~~~~~~~~~~ 289 (406)
..+....... +..... .......+..+++..+.+++.||+|||+... .+..+..+....+.
T Consensus 307 ~~~~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T 4aps_A 307 ATFAAERVDS------------SWFPVS--WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMA 372 (491)
T ss_dssp HHHHHHSCCC------------SSSCSG--GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHhcc------------CccCHH--HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Confidence 1111111100 000001 1112233455667788899999999986543 33333333322222
Q ss_pred hhh---------hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhh
Q 015466 290 TLQ---------SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQT 360 (406)
Q Consensus 290 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~ 360 (406)
... +............+......+..+.+..|.+|++.|+++.|+.+...++|+.++|.+.+.+.+ .+..
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~ 451 (491)
T 4aps_A 373 IPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEV 451 (491)
T ss_dssp HHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTT
T ss_pred HHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHH
Confidence 111 112222222222222233356678899999999999999999999999999999998775544 3444
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCc
Q 015466 361 AAILLLEALIVLSVVVILLIPFETKGK 387 (406)
Q Consensus 361 ~~~~~~~~~~~i~~~~~~~~~~et~~~ 387 (406)
..+.++++++++++++.+++.++++++
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 452 AYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888887777665
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.85 E-value=5.5e-21 Score=180.53 Aligned_cols=285 Identities=14% Similarity=0.097 Sum_probs=177.3
Q ss_pred CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015466 1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA 79 (406)
Q Consensus 1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~ 79 (406)
+||+.++.+.++..++..+.++++|++.+++.|++.|++.+.. +....++.|+.|+++|++..+..+.+..+|.++++.
T Consensus 63 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 142 (375)
T 2gfp_A 63 GRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPL 142 (375)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6999999999999999999999999999999999999998865 455678899999999999999999999999999999
Q ss_pred hhHHhcccchhHHHHHHhhHHHHHHHH-HHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015466 80 LAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE 158 (406)
Q Consensus 80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (406)
++..+.+..+||+.|++.++..++..+ ..+.+||+|+...++ ++
T Consensus 143 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~- 187 (375)
T 2gfp_A 143 IGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR----------------------------------TR- 187 (375)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC----------------------------------CC-
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc----------------------------------cc-
Confidence 999988888999999998887766544 556678876521000 00
Q ss_pred cccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccC
Q 015466 159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN 237 (406)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (406)
+ ++ +++..+ +|+.+ ...+..+.....+++...+.|.+..+. .+
T Consensus 188 ----~---------------~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g 231 (375)
T 2gfp_A 188 ----L---------------LT---SYKTLFGNSGFN----CYLLMLIGGLAGIAAFEACSGVLMGAV----------LG 231 (375)
T ss_dssp ----T---------------TT---CSTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCSCSSHHH----------HH
T ss_pred ----H---------------HH---HHHHHhcCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHH----------hC
Confidence 0 00 001111 12211 222222223333333333333221100 00
Q ss_pred ccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHH-HHHHHHHHHHHh-hh-hhHHHHHHHHHHHHHhhhhhhh
Q 015466 238 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVT-LQ-SNILLTALLSGARMFSMGTFII 314 (406)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 314 (406)
..............++.+++..+.+++.||.|||....... ...+........ .. +.+..........+......+.
T Consensus 232 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 311 (375)
T 2gfp_A 232 LSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPL 311 (375)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHH
Confidence 00111112223334556667777777778777733222211 111111111111 11 2222212222222233334566
Q ss_pred hhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc
Q 015466 315 ANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC 357 (406)
Q Consensus 315 ~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~ 357 (406)
...+..|.+| +.|+++.|+.+....+|+.++|.+.+.+.+..
T Consensus 312 ~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 312 ATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp THHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7788899999 89999999999999999999998887765543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.81 E-value=2.9e-19 Score=171.44 Aligned_cols=332 Identities=12% Similarity=0.062 Sum_probs=178.4
Q ss_pred CcchhhHHHHHHHHHHH---HHHhhcccHH-HHHHHHHHhhccCCcch-hhHHHHHhhcCC--CcchhHHHHHHHHHHHH
Q 015466 1 MEEGSILGGALVTFVAG---LLSAFSPNYI-SLLILRGLAGAGLGSGH-VFFSWFMEFVPP--SNRGKWMVVFSTFWTFG 73 (406)
Q Consensus 1 ~rr~~~~~~~~~~~i~~---~~~~~a~~~~-~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~--~~Rg~~~~~~~~~~~~G 73 (406)
|||+.++.+..+..++. ...++++... .+...|++.|++.|... .......++.++ ++|+...+....+..+|
T Consensus 71 Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 150 (417)
T 2cfq_A 71 GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVG 150 (417)
T ss_dssp TTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHH
Confidence 69999988877765432 1122333221 24566777777665432 122223333332 45676677777777888
Q ss_pred HHHHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCC
Q 015466 74 SVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN 153 (406)
Q Consensus 74 ~~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 153 (406)
..+++.++..+.+ .+||+.|++.+++.++..+..+..||+|+.. .+.+
T Consensus 151 ~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------------------------- 198 (417)
T 2cfq_A 151 WALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSS---ATVA---------------------------- 198 (417)
T ss_dssp HHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS---SCSS----------------------------
T ss_pred HHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccccc---cccc----------------------------
Confidence 8888888877654 5799999988877655544444444433210 0000
Q ss_pred CcccccccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 015466 154 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI 232 (406)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (406)
+.++ ++.+ +. ..++....+ +++.+.... ..+.....++....+.|.+..+..
T Consensus 199 ~~~~--~~~~-~~--------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------ 251 (417)
T 2cfq_A 199 NAVG--ANHS-AF--------------SLKLALELFRQPKLWFLSL----YVIGVSCTYDVFDQQFANFFTSFF------ 251 (417)
T ss_dssp SSSS--SCCC-CC--------------CHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHTS------
T ss_pred cccc--cccc-cc--------------cHHHHHHHhcCCchhhHHH----HHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 0000 0000 00 000112222 233332211 111111122221111221110000
Q ss_pred ccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Q 015466 233 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTF 312 (406)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (406)
...............+..+..+++.++.++++||+|||+.+..+..+..+.........+............+......
T Consensus 252 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (417)
T 2cfq_A 252 -ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp -SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHH
T ss_pred -hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 0000001111122333445677889999999999999998877666555543333322222222111111111112223
Q ss_pred hhhhhhcccccCcchhhHHHhHH-HHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 015466 313 IIANIFAPEIYPTSMRSTGAGVA-YAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVN 391 (406)
Q Consensus 313 ~~~~~~~~El~p~~~R~~a~g~~-~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~ 391 (406)
+..+.+.+|.+|++.|+++.|+. +..+++|++++|.+.+.+.+..+....|.+.+++++++.++.+++.||+|..++-.
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 410 (417)
T 2cfq_A 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCSSS
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHH
Confidence 44577899999999999999996 66778999999999998877655555677788888888877777777777766554
Q ss_pred c
Q 015466 392 T 392 (406)
Q Consensus 392 ~ 392 (406)
+
T Consensus 411 ~ 411 (417)
T 2cfq_A 411 R 411 (417)
T ss_dssp S
T ss_pred H
Confidence 3
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.80 E-value=4.9e-19 Score=174.73 Aligned_cols=109 Identities=17% Similarity=0.084 Sum_probs=94.5
Q ss_pred CcchhhHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHH---HHHHHHHHHH
Q 015466 1 MEEGSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV---FSTFWTFGSV 75 (406)
Q Consensus 1 ~rr~~~~~~~~~~~i~~~~~~~a~-~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~~G~~ 75 (406)
+||+.+..+.++..++.++.++++ |++.+++.|++.|++.|.. +....++.|++|+++|++..+. .+.+..+|.+
T Consensus 83 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ 162 (524)
T 2xut_A 83 GKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF 162 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999 9999999999999998876 4566788999999999877666 8889999999
Q ss_pred HHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHH
Q 015466 76 SEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV 109 (406)
Q Consensus 76 l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~ 109 (406)
+++.++..+.+..+||+.|++.++..++..+..+
T Consensus 163 ~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 163 FASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887778999999998877666544443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.36 E-value=3.2e-11 Score=116.00 Aligned_cols=141 Identities=14% Similarity=0.045 Sum_probs=101.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 015466 246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT----LQSNILLTALLSGARMFSMGTFIIANIFAPE 321 (406)
Q Consensus 246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 321 (406)
......++..++.+..|+++||+|||+.+..+.++.++..+.... ..+........+...++.....+....+.+|
T Consensus 67 ~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~ 146 (451)
T 1pw4_A 67 ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 146 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHH
Confidence 344455777889999999999999999998887777665554443 2222222222222223333445667888999
Q ss_pred ccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch-hhHHHHHHHHHHHHHHHHHHhcccccCC
Q 015466 322 IYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLIPFETKG 386 (406)
Q Consensus 322 l~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~et~~ 386 (406)
.+|.+.|+.+.|+.+....+|..++|.+.+.+.+..+ ....+.+.++++++..++..++.||++.
T Consensus 147 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 147 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 9999999999999999999999999999887776655 5566777787777777666666666544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.27 E-value=4.2e-10 Score=107.76 Aligned_cols=111 Identities=13% Similarity=0.041 Sum_probs=80.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 015466 244 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL---VTLQSNILLTALLSGARMFSMGTFIIANIFAP 320 (406)
Q Consensus 244 ~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (406)
........++..++.+..|.++||+|||+.+..+.++.++..... ....+........+...+......+....+.+
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~ 143 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVT 143 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHH
Confidence 334445556778899999999999999999988877776655544 22222222222222223333344567788999
Q ss_pred cccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHh
Q 015466 321 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV 354 (406)
Q Consensus 321 El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~ 354 (406)
|.+|.+.|+.+.|+.+....+|..++|.+.+.+.
T Consensus 144 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 144 VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887776
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.26 E-value=2.6e-10 Score=111.15 Aligned_cols=139 Identities=11% Similarity=0.017 Sum_probs=98.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015466 245 INVFITSFAELPGLLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIY 323 (406)
Q Consensus 245 ~~~~~~~~~~~~g~~~~~~l~dr-~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~ 323 (406)
.......++..++.+++|+++|| +|||+.+..+.++..+.........+............+......+....+.+|.+
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 137 (491)
T 4aps_A 58 SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLY 137 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHc
Confidence 34445567788899999999999 89999999887777666555444333332222222223333344567788899999
Q ss_pred Ccch--hhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccc
Q 015466 324 PTSM--RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE 383 (406)
Q Consensus 324 p~~~--R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e 383 (406)
|++. |+.+.++.+....+|..++|.+.+.+.+..+....+.+.++.++++.+...+..|+
T Consensus 138 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 138 DEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp SSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9988 77888888899999999999998887776666667777777677666665555444
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.13 E-value=5.6e-10 Score=104.75 Aligned_cols=143 Identities=17% Similarity=0.052 Sum_probs=100.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015466 245 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYP 324 (406)
Q Consensus 245 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p 324 (406)
.......+...++.+..|+++||+|||+.+..+.....+.........+............+......+....+.+|.+|
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~ 118 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYE 118 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCC
Confidence 33444556778899999999999999999988777666655544433332222222222223333345667788899999
Q ss_pred cchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCc
Q 015466 325 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK 387 (406)
Q Consensus 325 ~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~ 387 (406)
++.|+++.++.+....+|..++|.+.+.+.+..+....+.+.++..++..+...+..||++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 119 RTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 999999999999999999999999988766654555567777777777666555666776544
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.09 E-value=3e-09 Score=104.48 Aligned_cols=137 Identities=15% Similarity=0.079 Sum_probs=93.6
Q ss_pred HHHHHhhhhHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015466 247 VFITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGTFIIANIFAPEIYP 324 (406)
Q Consensus 247 ~~~~~~~~~~g~~~~~~l~dr~-grR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p 324 (406)
.....++..++.+.+|+++||+ |||+.+..+.++..+..+...... +............+......+....+.+|.+|
T Consensus 60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 139 (524)
T 2xut_A 60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD 139 (524)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence 3444567788899999999999 999999887776666555444433 33322222222223333445677888999999
Q ss_pred cchhhHHHhH---HHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccc
Q 015466 325 TSMRSTGAGV---AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE 383 (406)
Q Consensus 325 ~~~R~~a~g~---~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e 383 (406)
++.|+++.+. .+....+|+.++|.+.+.+.+..+....+.+.+++.+++.+...+..++
T Consensus 140 ~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 201 (524)
T 2xut_A 140 QSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKR 201 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999776666 8888889999999888777665555566777777766666555444433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.72 E-value=4.6e-07 Score=87.92 Aligned_cols=102 Identities=12% Similarity=0.007 Sum_probs=70.5
Q ss_pred HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHHHhhhhh
Q 015466 251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT------------------LQSNILLTALLSGARMFSMGTF 312 (406)
Q Consensus 251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 312 (406)
.++.++|++++|+++||+|||+.+..+.++..+..+.... ..+.....+.=+...+...+..
T Consensus 65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~ 144 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS 144 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3667889999999999999999998887766655443331 1111111111122223334456
Q ss_pred hhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHH
Q 015466 313 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVG 352 (406)
Q Consensus 313 ~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~ 352 (406)
+....+.+|..|++.|+...++......+|..+++.+...
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 184 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYF 184 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchh
Confidence 7788999999999999999999888877777777665443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.14 E-value=2.3e-06 Score=81.44 Aligned_cols=116 Identities=12% Similarity=0.089 Sum_probs=88.9
Q ss_pred CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHH-HHHHHHHHHHHHH
Q 015466 1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV-FSTFWTFGSVSEA 78 (406)
Q Consensus 1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~l~~ 78 (406)
+||+.+..+.++..++..+.++.++...+++..++.|++.+.. .....+..|..|++.||...++ ++....+|..++|
T Consensus 287 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp 366 (417)
T 2cfq_A 287 GGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 5788888888887777777778888888888888888775443 3345678899999999998888 5778889999999
Q ss_pred HhhHHhcccchhHHHHHHhhHHHHHHHHH-HHhccCCcc
Q 015466 79 ALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPESPR 116 (406)
Q Consensus 79 ~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~-~~~~pESp~ 116 (406)
.+.+.+.+..+|+..|.+.++..++..+. ....||.++
T Consensus 367 ~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred hhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99888777778999998887776665444 334565433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=24.10 E-value=46 Score=16.38 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=10.1
Q ss_pred HHHHHhhhchHHH
Q 015466 261 AALLVDRVGRKLS 273 (406)
Q Consensus 261 ~~~l~dr~grR~~ 273 (406)
.|-+..++||+.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 4678889999874
Done!