Query 015467
Match_columns 406
No_of_seqs 114 out of 778
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 13:08:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.2 4.9E-11 1.7E-15 118.8 12.2 259 49-402 131-393 (451)
2 2gfp_A EMRD, multidrug resista 99.0 7.4E-10 2.5E-14 108.2 11.3 240 48-404 99-339 (375)
3 3o7q_A L-fucose-proton symport 99.0 3.7E-09 1.3E-13 104.9 15.0 237 48-384 128-378 (438)
4 4aps_A DI-OR tripeptide H+ sym 98.7 1.3E-07 4.4E-12 95.6 13.4 146 231-404 285-435 (491)
5 4gc0_A D-xylose-proton symport 98.1 1.6E-06 5.5E-11 87.4 5.0 47 49-95 138-184 (491)
6 4aps_A DI-OR tripeptide H+ sym 97.9 1.4E-05 4.8E-10 80.5 7.7 149 226-404 10-159 (491)
7 2xut_A Proton/peptide symporte 97.7 5.4E-05 1.8E-09 77.0 7.7 73 49-136 121-196 (524)
8 2cfq_A Lactose permease; trans 97.7 2.3E-05 7.7E-10 78.1 4.3 92 286-399 265-357 (417)
9 2gfp_A EMRD, multidrug resista 97.6 0.00019 6.4E-09 69.5 9.6 134 232-403 3-136 (375)
10 1pw4_A Glycerol-3-phosphate tr 97.5 0.00024 8.4E-09 70.0 9.7 142 229-405 28-169 (451)
11 2xut_A Proton/peptide symporte 97.4 0.00029 1E-08 71.5 7.9 127 227-387 10-143 (524)
12 3o7q_A L-fucose-proton symport 97.2 0.00086 2.9E-08 65.9 9.1 102 284-404 65-166 (438)
13 4gc0_A D-xylose-proton symport 95.9 0.014 4.7E-07 58.3 7.3 113 287-404 62-175 (491)
14 2cfq_A Lactose permease; trans 95.3 0.0056 1.9E-07 60.6 2.0 79 229-322 7-85 (417)
15 2hac_A T-cell surface glycopro 21.6 29 0.00099 21.7 0.8 26 118-143 3-28 (33)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.22 E-value=4.9e-11 Score=118.82 Aligned_cols=259 Identities=14% Similarity=0.149 Sum_probs=161.3
Q ss_pred hccccchhhHHHHHhcCCCchhhhhHHHHHHHHHHhhhhhhcccccccccccccccccchhhhcccchhHHHHHHHHHHH
Q 015467 49 LANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFL 128 (406)
Q Consensus 49 ~s~n~~q~P~RAli~D~~p~~qq~~a~a~~s~~~glG~ilGy~~g~i~d~~~~~~~~~~~~~~~~~~q~~~~f~i~ai~l 128 (406)
++......+..+++.|..|+++|.+++++.....++|.++|..+++.. ....+ +.|..|.+.+++.
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--~~~~g------------~w~~~f~~~~~~~ 196 (451)
T 1pw4_A 131 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG--MAWFN------------DWHAALYMPAFCA 196 (451)
T ss_dssp HHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH--HHHTC------------CSTTCTHHHHHHH
T ss_pred HHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHhc------------cHHHHHHHHHHHH
Confidence 344456778899999999999999999999999999999998887541 11111 1345566666665
Q ss_pred HHHhhheeeEeeccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCccccchhhhccccccccCCC
Q 015467 129 TLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGS 208 (406)
Q Consensus 129 ~~~~~~Tl~~v~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (406)
+++.++..+..||.|......+. ++ . +.+ .+. + ..+++ ++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-~~---~------------~~~-----------~~~----~--------~~~~~-~~ 236 (451)
T 1pw4_A 197 ILVALFAFAMMRDTPQSCGLPPI-EE---Y------------KND-----------YPD----D--------YNEKA-EQ 236 (451)
T ss_dssp HHHHHHHHHHCCCSSTTTCCCSC-TT---T------------CCC-----------------------------------
T ss_pred HHHHHHHHhhccCCHhhcCCCCh-hh---h------------ccc-----------ccc----c--------chhhh-hc
Confidence 55555556667887543221110 00 0 000 000 0 00000 00
Q ss_pred CCCCchhhHHHH-HHHhccCCHHHHHHHHHHHHHHHHhhhhhhhcccccceeeecCCCCCCchhhHhHHhhhHHHHHHHH
Q 015467 209 FNDGPGAVLVNL-LTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (406)
Q Consensus 209 ~~~~~~~~~~~i-~~si~~mP~~~~~l~~v~ffsW~g~f~~~~y~T~~vg~~Vy~gdp~a~~~~~~~y~~Gvr~Gs~gL~ 287 (406)
....++. ++.+. -.+.++.+++..++.+.++..+..|.+.|+.+ .++.++. .. .+.+.
T Consensus 237 -----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-------------~~-~~~~~ 295 (451)
T 1pw4_A 237 -----ELTAKQIFMQYVL-PNKLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFALD-------------KS-SWAYF 295 (451)
T ss_dssp -------CCTHHHHHHTS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCCHH-------------HH-HHHHH
T ss_pred -----ccccccchHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHH-------------HH-HHHHH
Confidence 0011121 22222 24788999999999999999999999888866 4443321 12 23455
Q ss_pred HHHHHHHHHHHhHHHhhhhc--CchHHHHHHHHHHH-HHHHHHHHHHhhhhcccCCCccccCCCcchhhHHHHHHHHHhh
Q 015467 288 LNSVVLGVSSFLIEPMCRWI--GSRLVWAISNFIVF-ACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (406)
Q Consensus 288 ~~siv~~v~s~~l~~l~~~i--g~k~~~~~s~~~fa-i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 364 (406)
.+.+...+.+++..++.+|+ |+|++..++.++.+ ++++ ..... + ..+.+...+...+.|
T Consensus 296 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------~-~~~~~~~~~~~~~~g 357 (451)
T 1pw4_A 296 LYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI---VYWMN--------------P-AGNPTVDMICMIVIG 357 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH---HTTSC--------------C-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---HHHHh--------------c-ccCHHHHHHHHHHHH
Confidence 56677778888889999999 99998877766554 3322 11110 1 014566667777888
Q ss_pred hHHHHHhhchhhhhhcccccCCCCcceeehhhhhhhhc
Q 015467 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVI 402 (406)
Q Consensus 365 i~wA~~~siPfaLl~~~~~~~~~~~G~~mgllN~~i~l 402 (406)
+..+..+...++++.+..+ ++..|..+|+.|....+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 358 FLIYGPVMLIGLHALELAP--KKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp HHHTHHHHHHHHHHHHTSC--TTHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHhc--hhhhhhHHHHHHHHHHH
Confidence 8888777777788888765 35678889998887765
No 2
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.04 E-value=7.4e-10 Score=108.20 Aligned_cols=240 Identities=14% Similarity=0.021 Sum_probs=155.9
Q ss_pred hhccccchhhHHHHHhcCCCchhhhhHHHHHHHHHHhhhhhhcccccccccccccccccchhhhcccchhHHHHHHHHHH
Q 015467 48 DLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVF 127 (406)
Q Consensus 48 D~s~n~~q~P~RAli~D~~p~~qq~~a~a~~s~~~glG~ilGy~~g~i~d~~~~~~~~~~~~~~~~~~q~~~~f~i~ai~ 127 (406)
-++....+....+++.|..|+++|.+++++.+...++|.++|..+++.. .+. ...|..|.+.+++
T Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--~~~-------------~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 99 GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL--DTM-------------WNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS--SCH-------------HHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHh-------------ccHHHHHHHHHHH
Confidence 4555667778899999999999999999999999999999999887641 111 1357888888877
Q ss_pred HHHHhhheeeEeeccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCccccchhhhccccccccCC
Q 015467 128 LTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (406)
Q Consensus 128 l~~~~~~Tl~~v~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (406)
.+++.++.....||+|..++++ + +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------~---~ 187 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVDAPR-----------------------------------------------------T---R 187 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTTCCC-----------------------------------------------------C---C
T ss_pred HHHHHHHHHHHCcccCCCCccc-----------------------------------------------------c---c
Confidence 7777776677778764221100 0 0
Q ss_pred CCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhhhhcccccceeeecCCCCCCchhhHhHHhhhHHHHHHHH
Q 015467 208 SFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (406)
Q Consensus 208 ~~~~~~~~~~~~i~~si~~mP~~~~~l~~v~ffsW~g~f~~~~y~T~~vg~~Vy~gdp~a~~~~~~~y~~Gvr~Gs~gL~ 287 (406)
....++++++. |.++.+++..++.+.++..+..|.+.|..+ .++.++ ... .+-+.
T Consensus 188 -----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-------------~~~-g~~~~ 242 (375)
T 2gfp_A 188 -----LLTSYKTLFGN-----SGFNCYLLMLIGGLAGIAAFEACSGVLMGA-VLGLSS-------------MTV-SILFI 242 (375)
T ss_dssp -----TTTCSTHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCSCSSHH-HHHHHH-------------HHH-HHHHH
T ss_pred -----HHHHHHHHhcC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCH-------------HHH-HHHHH
Confidence 01123344444 678889999999999999998888877755 232111 122 23345
Q ss_pred HHHHHHHHHHHhHHHhhhhcCchHHHHHHHHH-HHHHHHHHHHHHhhhhcccCCCccccCCCcchhhHHHHHHHHHhhhH
Q 015467 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFI-VFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (406)
Q Consensus 288 ~~siv~~v~s~~l~~l~~~ig~k~~~~~s~~~-fai~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Gi~ 366 (406)
.+++...+.+++.+++.||++++... +..+ ...++....+.. .. ..+.+...+...+.|+.
T Consensus 243 ~~~~~~~~~~~~~~~l~~r~~~~~~~--~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~~~~l~g~~ 304 (375)
T 2gfp_A 243 LPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPDW-FG---------------VMNVWTLLVPAALFFFG 304 (375)
T ss_dssp THHHHHHHHHHHHHTTTTHHHHHHHH--HHHHHHHTSSSSSHHHH-HH---------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh-hc---------------cccHHHHHHHHHHHHHH
Confidence 55666777788888888888763222 2222 111111001100 00 01445566777888999
Q ss_pred HHHHhhchhhhhhcccccCCCCcceeehhhhhhhhccc
Q 015467 367 LAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQ 404 (406)
Q Consensus 367 wA~~~siPfaLl~~~~~~~~~~~G~~mgllN~~i~lpQ 404 (406)
.+.....-.+++.+..+ +..|..+|+.|....+++
T Consensus 305 ~~~~~~~~~~~~~~~~p---~~~g~~~g~~~~~~~~g~ 339 (375)
T 2gfp_A 305 AGMLFPLATSGAMEPFP---FLAGTAGALVGGLQNIGS 339 (375)
T ss_dssp HHHTSSTTHHHHHTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhCC---cccchHHHHHHHHHHHHH
Confidence 99988888888888765 356888888887766544
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.01 E-value=3.7e-09 Score=104.95 Aligned_cols=237 Identities=13% Similarity=0.076 Sum_probs=143.9
Q ss_pred hhccccchhhHHHHHhcCCCchhhhhHHHHHHHHHHhhhhhhcccccccccccccccccchhhh------------cccc
Q 015467 48 DLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACC------------AACG 115 (406)
Q Consensus 48 D~s~n~~q~P~RAli~D~~p~~qq~~a~a~~s~~~glG~ilGy~~g~i~d~~~~~~~~~~~~~~------------~~~~ 115 (406)
-++....+.+..+++.|..|+++|.+++++.+...++|.++|..+++.. .....+...+.... ....
T Consensus 128 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (438)
T 3o7q_A 128 AAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL-ILSNVPHQSQDVLDKMSPEQLSAYKHSLVL 206 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH-HHTSSCCCCHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccccccccccCCcchhhhhhhhhhh
Confidence 3555667778999999999999999999999999999999999988751 10111100000000 0001
Q ss_pred hhHHHHHHHHHHHHHHhhh-eeeEeeccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCccccch
Q 015467 116 NLKAAFLVAVVFLTLCALV-TIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDAN 194 (406)
Q Consensus 116 q~~~~f~i~ai~l~~~~~~-Tl~~v~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (406)
+.|..|.+.+++.++..++ .....||.+. +.++
T Consensus 207 ~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~------------------------------------------- 240 (438)
T 3o7q_A 207 SVQTPYMIIVAIVLLVALLIMLTKFPALQS---DNHS------------------------------------------- 240 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCCTT---TCCC-------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCcccc---cccc-------------------------------------------
Confidence 1577776554444433332 2222333211 0000
Q ss_pred hhhccccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhhhhcccc-cceeeecCCCCCCchhhH
Q 015467 195 LKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDW-MGREVYHGDPKGNDHEVK 273 (406)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~si~~mP~~~~~l~~v~ffsW~g~f~~~~y~T~~-vg~~Vy~gdp~a~~~~~~ 273 (406)
++ + .+.....++++++ .+.++.+++..++.+.+...+..|...| ..+ .++.++.
T Consensus 241 --------~~--~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~------- 295 (438)
T 3o7q_A 241 --------DA--K--QGSFSASLSRLAR-----IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEE-IPGMTAG------- 295 (438)
T ss_dssp --------CS--S--TTSHHHHHHHHTT-----CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTCCHH-------
T ss_pred --------cc--c--ccchhhhHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCcchh-------
Confidence 00 0 0111223333333 3568888888899888888888888888 443 4443321
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCccccCCCcchhh
Q 015467 274 FYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIK 353 (406)
Q Consensus 274 ~y~~Gvr~Gs~gL~~~siv~~v~s~~l~~l~~~ig~k~~~~~s~~~fai~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
.. .+....+.+...+..++..++.+|+|+|++..++.++.+++++...+.. +.
T Consensus 296 ------~~-~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~ 348 (438)
T 3o7q_A 296 ------FA-ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--------------------GH 348 (438)
T ss_dssp ------HH-HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC--------------------HH
T ss_pred ------HH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC--------------------Cc
Confidence 12 2334556667777888889999999999999888877766554333221 22
Q ss_pred HHHHHHHHHhhhHHHHHhhchhhhhhccccc
Q 015467 354 VASLVVFTLLGFPLAITYSVPFAITAELTAD 384 (406)
Q Consensus 354 ~~~~~l~~~~Gi~wA~~~siPfaLl~~~~~~ 384 (406)
+ .++.+.+.|+..+......++++.+..++
T Consensus 349 ~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 349 V-GLIALTLCSAFMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp H-HHHHHHHHHHHHTTHHHHHHHHHHSSCGG
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3 34455778888888888888887776653
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.68 E-value=1.3e-07 Score=95.58 Aligned_cols=146 Identities=8% Similarity=-0.013 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccceeeecCCCCCCchhhHhHHhhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcCch
Q 015467 231 MHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSR 310 (406)
Q Consensus 231 ~~~l~~v~ffsW~g~f~~~~y~T~~vg~~Vy~gdp~a~~~~~~~y~~Gvr~Gs~gL~~~siv~~v~s~~l~~l~~~ig~k 310 (406)
...+++..++.|..+.....+.+.|..+ .++.++.. . .+.....++...+.+.+..++.+|+|+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~l~~r~~~r 349 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAE-RVDSSWFP---------V-----SWFQSLNPLFIMLYTPFFAWLWTAWKKN 349 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHH-SCCCSSSC---------S-----GGGTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHH-HhccCccC---------H-----HHHhccchHHHHHHHHHHHHHHHHHhcc
Confidence 4456666777788777776666666655 33333211 1 1223445555666677778888898887
Q ss_pred HHHH-----HHHHHHHHHHHHHHHHHhhhhcccCCCccccCCCcchhhHHHHHHHHHhhhHHHHHhhchhhhhhcccccC
Q 015467 311 LVWA-----ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS 385 (406)
Q Consensus 311 ~~~~-----~s~~~fai~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Gi~wA~~~siPfaLl~~~~~~~ 385 (406)
+... ++.++.++++....+..... .. +...+.+...+...+.|+..+......++++.+..++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~- 417 (491)
T 4aps_A 350 QPSSPTKFAVGLMFAGLSFLLMAIPGALY----GT-------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK- 417 (491)
T ss_dssp ---CHHHHHHHHHHHHHHHTTTHHHHHHC----CC-------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhc----CC-------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-
Confidence 5543 55555555544333322110 00 0011445566777788888888888888888887663
Q ss_pred CCCcceeehhhhhhhhccc
Q 015467 386 GGGQGLAIGVLNLAIVIPQ 404 (406)
Q Consensus 386 ~~~~G~~mgllN~~i~lpQ 404 (406)
+..|..+|+.|....++.
T Consensus 418 -~~~g~~~g~~~~~~~~g~ 435 (491)
T 4aps_A 418 -AFNSQMMSMWFLSSSVGS 435 (491)
T ss_dssp -TCSSSSTHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 456778888888766543
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.12 E-value=1.6e-06 Score=87.36 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=39.6
Q ss_pred hccccchhhHHHHHhcCCCchhhhhHHHHHHHHHHhhhhhhcccccc
Q 015467 49 LANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGAS 95 (406)
Q Consensus 49 ~s~n~~q~P~RAli~D~~p~~qq~~a~a~~s~~~glG~ilGy~~g~i 95 (406)
++........-+|+.|..|+++|.+..++......+|.++++.++..
T Consensus 138 ~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 184 (491)
T 4gc0_A 138 IGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYF 184 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchh
Confidence 34445566778999999999999999999999999999999888754
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.93 E-value=1.4e-05 Score=80.49 Aligned_cols=149 Identities=10% Similarity=0.037 Sum_probs=107.7
Q ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhcccccceeeecCCCCCCchhhHhHHhhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 015467 226 HLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCR 305 (406)
Q Consensus 226 ~mP~~~~~l~~v~ffsW~g~f~~~~y~T~~vg~~Vy~gdp~a~~~~~~~y~~Gvr~Gs~gL~~~siv~~v~s~~l~~l~~ 305 (406)
+-|+.++.++.+.++..++++.+..+...|+.+....+|-+.+ ...-.+....+.+...+.+++..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----------~~~~~~~~~~~~~~~~~~~~~~g~l~d 79 (491)
T 4aps_A 10 GQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHIT----------RATAASIMAIYASMVYLSGTIGGFVAD 79 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSC----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577889999999999999988888888887763211111110 011234566677788888889999999
Q ss_pred h-cCchHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCccccCCCcchhhHHHHHHHHHhhhHHHHHhhchhhhhhccccc
Q 015467 306 W-IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTAD 384 (406)
Q Consensus 306 ~-ig~k~~~~~s~~~fai~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Gi~wA~~~siPfaLl~~~~~~ 384 (406)
| +|+|++..++.++++++.+...+.. +.+..++...+.|+..+.....-.+++++..+.
T Consensus 80 r~~g~r~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 80 RIIGARPAVFWGGVLIMLGHIVLALPF--------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHSCC--------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhh--------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 9 8999999999988876655333221 556667777888999999999999999998776
Q ss_pred CCCCcceeehhhhhhhhccc
Q 015467 385 SGGGQGLAIGVLNLAIVIPQ 404 (406)
Q Consensus 385 ~~~~~G~~mgllN~~i~lpQ 404 (406)
++|+.|..+++++....+++
T Consensus 140 ~~~~r~~~~~~~~~~~~~g~ 159 (491)
T 4aps_A 140 HDRRRDAGFSIFVFGINLGA 159 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeehHHHHHHHHHH
Confidence 55557777887777665543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.70 E-value=5.4e-05 Score=76.97 Aligned_cols=73 Identities=11% Similarity=0.107 Sum_probs=51.0
Q ss_pred hccccchhhHHHHHhcCCCchhhhhHHHH---HHHHHHhhhhhhcccccccccccccccccchhhhcccchhHHHHHHHH
Q 015467 49 LANNTVQGPARALLADLSGPDQRNSANAI---FCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAV 125 (406)
Q Consensus 49 ~s~n~~q~P~RAli~D~~p~~qq~~a~a~---~s~~~glG~ilGy~~g~i~d~~~~~~~~~~~~~~~~~~q~~~~f~i~a 125 (406)
++......+..+++.|..|+++|+++.+. .....++|.++|..+++. ..+. ...+..|.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~--l~~~-------------~g~~~~f~~~~ 185 (524)
T 2xut_A 121 LGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL--LLKN-------------FGAAVAFGIPG 185 (524)
T ss_dssp HHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH--HHHT-------------SCHHHHHHHHH
T ss_pred HhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhcc-------------ccHHHHHHHHH
Confidence 34455667888999999999998765555 888889999999888764 1111 12577788877
Q ss_pred HHHHHHhhhee
Q 015467 126 VFLTLCALVTI 136 (406)
Q Consensus 126 i~l~~~~~~Tl 136 (406)
++.+++.++..
T Consensus 186 ~~~~~~~~~~~ 196 (524)
T 2xut_A 186 VLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76666655443
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.67 E-value=2.3e-05 Score=78.10 Aligned_cols=92 Identities=10% Similarity=0.049 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCccccCCCcchhhHHHHHHHHHhhh
Q 015467 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (406)
Q Consensus 286 L~~~siv~~v~s~~l~~l~~~ig~k~~~~~s~~~fai~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Gi 365 (406)
..+..+...+..++..++.+|+|+|++..++.++.++++....+. + +.+..++...+.|+
T Consensus 265 ~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-----------------~---~~~~~~~~~~l~~~ 324 (417)
T 2cfq_A 265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----------------T---SALEVVILKTLHMF 324 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-----------------C---SHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-----------------c---cHHHHHHHHHHHHH
Confidence 344555556667788999999999998887776666544322111 1 33444444445555
Q ss_pred HHHHHhhchhhhhhcccccCCCCcceeehh-hhhh
Q 015467 366 PLAITYSVPFAITAELTADSGGGQGLAIGV-LNLA 399 (406)
Q Consensus 366 ~wA~~~siPfaLl~~~~~~~~~~~G~~mgl-lN~~ 399 (406)
........-++++++..++ +..|+..|+ .|..
T Consensus 325 ~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~ 357 (417)
T 2cfq_A 325 EVPFLLVGCFKYITSQFEV--RFSATIYLVCFCFF 357 (417)
T ss_dssp HHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHH
Confidence 5554444446677776553 334544555 3543
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.60 E-value=0.00019 Score=69.52 Aligned_cols=134 Identities=13% Similarity=0.123 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccceeeecCCCCCCchhhHhHHhhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcCchH
Q 015467 232 HVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRL 311 (406)
Q Consensus 232 ~~l~~v~ffsW~g~f~~~~y~T~~vg~~Vy~gdp~a~~~~~~~y~~Gvr~Gs~gL~~~siv~~v~s~~l~~l~~~ig~k~ 311 (406)
..+++..++.++++..+..+.+.+..+ ++.++. .. .+....+.+...+.+++..++.+|+|+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~-------------~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~ 66 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARD--LNVREG-------------AV-QSVMGAYLLTYGVSQLFYGPISDRVGRRP 66 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT--SSSTTH-------------HH-HHHHHHHHHHHHHHHTTHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH--cCCCHH-------------HH-HHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 456778888888887777776665443 333322 12 24456677778888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCccccCCCcchhhHHHHHHHHHhhhHHHHHhhchhhhhhcccccCCCCcce
Q 015467 312 VWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGL 391 (406)
Q Consensus 312 ~~~~s~~~fai~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Gi~wA~~~siPfaLl~~~~~~~~~~~G~ 391 (406)
+..++.++.+++.....+.. +.+..++...+.|+..+.......+++++..++ ++.|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~ 124 (375)
T 2gfp_A 67 VILVGMSIFMLATLVAVTTS--------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER--TQLRH 124 (375)
T ss_dssp CCHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SSCCS
T ss_pred hHHHHHHHHHHHHHHHHHhc--------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH--HHHHH
Confidence 99999998887766555543 667778888899999999999999999998763 45666
Q ss_pred eehhhhhhhhcc
Q 015467 392 AIGVLNLAIVIP 403 (406)
Q Consensus 392 ~mgllN~~i~lp 403 (406)
.+|+.+....++
T Consensus 125 ~~~~~~~~~~~g 136 (375)
T 2gfp_A 125 ANSLLNMGILVS 136 (375)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788877766554
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.54 E-value=0.00024 Score=70.04 Aligned_cols=142 Identities=14% Similarity=0.075 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccceeeecCCCCCCchhhHhHHhhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcC
Q 015467 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (406)
Q Consensus 229 ~~~~~l~~v~ffsW~g~f~~~~y~T~~vg~~Vy~gdp~a~~~~~~~y~~Gvr~Gs~gL~~~siv~~v~s~~l~~l~~~ig 308 (406)
+.+..+++.+++.++.+..+..+...+..+ + .++. .. .+....+.+...+.+++..++.+|+|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~s~~-------------~~-g~~~~~~~~~~~~~~~~~G~l~dr~g 90 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ--G-FSRG-------------DL-GFALSGISIAYGFSKFIMGSVSDRSN 90 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS--T-TCSS-------------CH-HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-ccHh-------------HH-HHHHHHHHHHHHHHHHhHHHHHHhcC
Confidence 346677777888888877777776666655 2 3332 12 24455677778888888999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCccccCCCcchhhHHHHHHHHHhhhHHHHHhhchhhhhhcccccCCCC
Q 015467 309 SRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGG 388 (406)
Q Consensus 309 ~k~~~~~s~~~fai~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Gi~wA~~~siPfaLl~~~~~~~~~~ 388 (406)
+|++..++.++.+++.+...+....+ + +.+..++...+.|+..+.....-.+++++..+ +++
T Consensus 91 ~r~~l~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~--~~~ 152 (451)
T 1pw4_A 91 PRVFLPAGLILAAAVMLFMGFVPWAT-------------S---SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS--QKE 152 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHH-------------S---SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCT--TTH
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcc-------------c---cHHHHHHHHHHHHHHhhhccchHHHHHHHHCC--chh
Confidence 99999999999988776655511000 0 55677788889999999988888899999876 356
Q ss_pred cceeehhhhhhhhcccc
Q 015467 389 QGLAIGVLNLAIVIPQV 405 (406)
Q Consensus 389 ~G~~mgllN~~i~lpQi 405 (406)
.|..+|+.+....++++
T Consensus 153 r~~~~~~~~~~~~~g~~ 169 (451)
T 1pw4_A 153 RGGIVSVWNCAHNVGGG 169 (451)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 78888888887766554
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.37 E-value=0.00029 Score=71.49 Aligned_cols=127 Identities=9% Similarity=-0.063 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhcccccceeeec------CCCCCCchhhHhHHhhhHHHHHHHHHHHHHHHHHHHhH
Q 015467 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYH------GDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLI 300 (406)
Q Consensus 227 mP~~~~~l~~v~ffsW~g~f~~~~y~T~~vg~~Vy~------gdp~a~~~~~~~y~~Gvr~Gs~gL~~~siv~~v~s~~l 300 (406)
.|+.++.+++.+++..++++.+..+...|+.+ .++ -++. .. .+.+..+.+...+.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~s~~-------------~~-g~~~~~~~~~~~~~~~~~ 74 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMT-ALLLSIPEELRGA-------------VA-KDVFHSFVIGVYFFPLLG 74 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHH-SCSSCCSSSTTTT-------------TH-HHHHHHHHHHHHHTHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccccccCHH-------------HH-HHHHHHHHHHHHHHHHHH
Confidence 46778889999999999998888888887765 333 1221 11 244556667777788888
Q ss_pred HHhhhhc-CchHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCccccCCCcchhhHHHHHHHHHhhhHHHHHhhchhhhhh
Q 015467 301 EPMCRWI-GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITA 379 (406)
Q Consensus 301 ~~l~~~i-g~k~~~~~s~~~fai~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Gi~wA~~~siPfaLl~ 379 (406)
.++.+|+ |+|++..++.++.+++.+...+.. .+.+..++...+.|+..+.....-.++++
T Consensus 75 G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 135 (524)
T 2xut_A 75 GWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMG 135 (524)
T ss_dssp HHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-------------------ccHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 9999999 999999999888877655433321 03456677778889999988888889999
Q ss_pred cccccCCC
Q 015467 380 ELTADSGG 387 (406)
Q Consensus 380 ~~~~~~~~ 387 (406)
+..++++|
T Consensus 136 ~~~~~~~r 143 (524)
T 2xut_A 136 DQFDQSNK 143 (524)
T ss_dssp HTCSTTTT
T ss_pred HHcCccch
Confidence 98765433
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.22 E-value=0.00086 Score=65.90 Aligned_cols=102 Identities=7% Similarity=-0.113 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCccccCCCcchhhHHHHHHHHHh
Q 015467 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (406)
Q Consensus 284 ~gL~~~siv~~v~s~~l~~l~~~ig~k~~~~~s~~~fai~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 363 (406)
+-...+.+...+.+++..++.+|+|+|++..++.++.+++.+...+.... + +.+..++...+.
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--------------~---~~~~l~~~~~l~ 127 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--------------M---NYTLFLVGLFII 127 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT--------------T---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc--------------c---cHHHHHHHHHHH
Confidence 44556777777888889999999999999999999988777655322211 1 667788888999
Q ss_pred hhHHHHHhhchhhhhhcccccCCCCcceeehhhhhhhhccc
Q 015467 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQ 404 (406)
Q Consensus 364 Gi~wA~~~siPfaLl~~~~~~~~~~~G~~mgllN~~i~lpQ 404 (406)
|+..+.....-.+++++..++ ++.|..+|+.+.+..+++
T Consensus 128 G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 128 AAGLGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSSCS--TTHHHHHHHHHHHHHHHH
T ss_pred HhhHHHhhhhHHHHHHHHcCc--hhHHHHHHHHHHHHHHHH
Confidence 999999999999999998763 456666788777766544
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=95.86 E-value=0.014 Score=58.29 Aligned_cols=113 Identities=12% Similarity=0.027 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhcccCC-CccccCCCcchhhHHHHHHHHHhhh
Q 015467 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSG-GIEHGIGANQAIKVASLVVFTLLGF 365 (406)
Q Consensus 287 ~~~siv~~v~s~~l~~l~~~ig~k~~~~~s~~~fai~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~Gi 365 (406)
..+.+-.++.+++..++.+|+|||+++.++.+++.++-+.+.+........... .+.... ..+.+..++.=.+.|+
T Consensus 62 s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~---a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYL---AGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGG---GGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHH---hhhHHHHHHHHHHHHH
Confidence 344555667788889999999999999999999887766555321000000000 000000 1166777788889999
Q ss_pred HHHHHhhchhhhhhcccccCCCCcceeehhhhhhhhccc
Q 015467 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQ 404 (406)
Q Consensus 366 ~wA~~~siPfaLl~~~~~~~~~~~G~~mgllN~~i~lpQ 404 (406)
.-+....+-..+++|..+. +..|..+++.+.++.+++
T Consensus 139 g~G~~~~~~~~~i~E~~p~--~~rg~~~~~~~~~~~~g~ 175 (491)
T 4gc0_A 139 GVGLASMLSPMYIAELAPA--HIRGKLVSFNQFAIIFGQ 175 (491)
T ss_dssp HHHHHHHHHHHHHHTTSCG--GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCH--HhhhhhHHhhhhhhhhhh
Confidence 9999999999999998763 556777777777665543
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.29 E-value=0.0056 Score=60.59 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccceeeecCCCCCCchhhHhHHhhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcC
Q 015467 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (406)
Q Consensus 229 ~~~~~l~~v~ffsW~g~f~~~~y~T~~vg~~Vy~gdp~a~~~~~~~y~~Gvr~Gs~gL~~~siv~~v~s~~l~~l~~~ig 308 (406)
|..+.++...++.++++..++.|...|+.+ .++-++. ..| +-+..+.+...+.+.+..++.+|+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~s~~-------------~~g-~~~~~~~~~~~i~~~~~G~lsDr~G 71 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHD-INHISKS-------------DTG-IIFAAISLFSLLFQPLFGLLSDKLG 71 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHT-TTCCCTT-------------TSH-HHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHH-------------HHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677888888888888888888888877765 2443432 122 3355666777888889999999999
Q ss_pred chHHHHHHHHHHHH
Q 015467 309 SRLVWAISNFIVFA 322 (406)
Q Consensus 309 ~k~~~~~s~~~fai 322 (406)
+|+++.++.+++++
T Consensus 72 rr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 72 LRKYLLWIITGMLV 85 (417)
T ss_dssp TCCHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHH
Confidence 99999988777654
No 15
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=21.55 E-value=29 Score=21.74 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhhheeeEeeccC
Q 015467 118 KAAFLVAVVFLTLCALVTIYFADEVP 143 (406)
Q Consensus 118 ~~~f~i~ai~l~~~~~~Tl~~v~E~p 143 (406)
+.++++-.++++-++++|.++.||+=
T Consensus 3 ~lCYiLDgiL~iYgii~T~Ly~R~K~ 28 (33)
T 2hac_A 3 KLCYLLDGILFIYGVILTALFLRVKF 28 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ceEeehHHHHHHHHHHHHHHHHHHHh
Confidence 57888899999999999999999973
Done!