BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015468
(406 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 270/408 (66%), Positives = 303/408 (74%), Gaps = 22/408 (5%)
Query: 4 QPPSQPSDQ---TSQYQQQHQQWMAYQQQSQQQQQQHQTPVPPPVGWTPQPVPPPSQQTQ 60
QPP P Q Q QQ QQ Q W Q PSQQ
Sbjct: 9 QPPMAPMSMDQHQYQQQAPPPTQQQQWMMPPQQPQQPQFQPQSQPAWAQQ----PSQQQ- 63
Query: 61 PYGV--------APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTN 112
YG +P + + +RSLWIGDLQ WM+E+Y+++ F HTGE VS KVIRNKQT
Sbjct: 64 -YGAMATTNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTG 122
Query: 113 FSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVG 172
SEGYGF+EF SHAAAE +LQT+NGT MP+ EQNFR+NWA+ GAGERR DD + TIFVG
Sbjct: 123 QSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERR-DDSAEHTIFVG 181
Query: 173 DLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV 232
DLAADVTDY+LQETF++VYSSV+GAKVVTDR TGRSKGYGFV+F DESEQLR+MTEMNGV
Sbjct: 182 DLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGV 241
Query: 233 LCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILK 292
LCSTRPMRIGPAA KK QKATYQN Q +QGE+DPNNTTIFVGGLDP+V ++ L+
Sbjct: 242 LCSTRPMRIGPAANKKPVGTP--QKATYQNPQATQGESDPNNTTIFVGGLDPTVAEEHLR 299
Query: 293 TVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQ 352
VF YGELVHVKI AGKRCGFVQF R AEQALS LNGTQLGGQSIRLSWGRSPS+KQ
Sbjct: 300 QVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQ 359
Query: 353 SDQAQW--NGGGYYGFAQGYEAYGYAPPTQDPNMYYGGFPGYGTYQQP 398
+DQ QW +GG YYG+ QGYEAYGYAPP QDPNMYYG +PGY YQQP
Sbjct: 360 TDQTQWGGSGGAYYGYGQGYEAYGYAPPAQDPNMYYGNYPGYANYQQP 407
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 469 bits (1208), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/330 (72%), Positives = 270/330 (81%), Gaps = 13/330 (3%)
Query: 62 YGVA---PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYG 118
YG+ P ++SD ++SLWIGDLQ WM+E+YI S+F +GE S KVIRNK T SEGYG
Sbjct: 46 YGIGSQNPGSASD-VKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYG 104
Query: 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR-QDDGPDFTIFVGDLAAD 177
FIEFVSH+ AERVLQT+NG MPSTEQ FRLNWA GAGE+R Q +GPD TIFVGDLA +
Sbjct: 105 FIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPE 164
Query: 178 VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237
VTDY+L +TF+ VY SVKGAKVV DRTTGRSKGYGFVRF DE+EQ+R+MTEMNG CSTR
Sbjct: 165 VTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTR 224
Query: 238 PMRIGPAATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFG 296
PMRIGPAA K A Q A YQNTQG+ G+NDPNNTTIFVGGLD +VTDD LK++FG
Sbjct: 225 PMRIGPAANKNALP---MQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFG 281
Query: 297 QYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQA 356
Q+GEL+HVKIP GKRCGFVQ+AN+ AE ALSVLNGTQLGGQSIRLSWGRSP NKQSDQA
Sbjct: 282 QFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSP-NKQSDQA 340
Query: 357 QWNGGGYYGF-AQGYEAYGYA--PPTQDPN 383
QWNGGGYYG+ Q YGYA PPTQDPN
Sbjct: 341 QWNGGGYYGYPPQPQGGYGYAAQPPTQDPN 370
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 237/318 (74%), Positives = 266/318 (83%), Gaps = 7/318 (2%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
S+ IRSLWIGDLQPWM+E+Y+ ++FG TGE + KVIRNKQ +SEGYGFIEFV+HA A
Sbjct: 75 SAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATA 134
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
ER LQT+NG MPS+EQ FRLNWA GAGERRQ +GP+ T+FVGDLA DVTD++L ETF+
Sbjct: 135 ERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFK 194
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
AVYSSVKGAKVV DRTTGRSKGYGFVRF DESEQ+R+MTEMNG CS+RPMR GPAA KK
Sbjct: 195 AVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
Query: 249 AATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA 308
T Q A+YQNTQG+ GE+DP NTTIFVG +D SVT+D LK+VFGQ+GELVHVKIPA
Sbjct: 255 PLT---MQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPA 311
Query: 309 GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQS--DQA--QWNGGGYY 364
GKRCGFVQ+ANR CAEQALSVLNGTQLGGQSIRLSWGRSPSNKQ+ DQA GG Y
Sbjct: 312 GKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPDQAQYGGGGGYYG 371
Query: 365 GFAQGYEAYGYAPPTQDP 382
QGYEAYGYAPP QDP
Sbjct: 372 YPPQGYEAYGYAPPPQDP 389
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/345 (67%), Positives = 267/345 (77%), Gaps = 19/345 (5%)
Query: 42 PPPVGWTPQPVPPPSQQTQPYGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFV 101
PPP W PQ PPS Q ++D IR+LWIGDLQ WM+E+++ F HTGE V
Sbjct: 38 PPPQMWNPQAAAPPSVQP--------TTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMV 89
Query: 102 SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS-TEQNFRLNWATYGAGERR 160
S KVIRNKQT EGYGFIEF SHAAAERVLQTFN +PS +Q FRLNWA+ +G++R
Sbjct: 90 SAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKR 149
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220
DD PD+TIFVGDLAADVTDY+L ETFRA Y SVKGAKVV DR TGR+KGYGFVRF DES
Sbjct: 150 -DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 221 EQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNT-QGSQGENDPNNTTIFV 279
EQ+R+MTEMNGV CSTRPMRIGPAA+KK TG Q+ +YQ++ G +NDPNNTT+FV
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTG---QRDSYQSSAAGVTTDNDPNNTTVFV 265
Query: 280 GGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQS 339
GGLD SVTDD LK VF QYGE+VHVKIPAGKRCGFVQF+ ++CAE+AL +LNG QLGG +
Sbjct: 266 GGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTT 325
Query: 340 IRLSWGRSPSNKQS-DQAQWNGGGYYGFAQGYEAYGYAPPTQDPN 383
+RLSWGRSPSNKQS D +Q+ GGY QG E YGY P QDPN
Sbjct: 326 VRLSWGRSPSNKQSGDPSQFYYGGY---GQGQEQYGYTMP-QDPN 366
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/351 (55%), Positives = 248/351 (70%), Gaps = 16/351 (4%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
+SS+ +++WIGDLQ WM+ESY+ S F GE +S K+IRNKQT SE YGF+EF +HAA
Sbjct: 78 SSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAA 137
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AE+VLQ++NGT MP+TEQ FRLNWA + GE+R + G DF+IFVGDLA+DVTD +L++TF
Sbjct: 138 AEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTF 197
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
+ Y S+KGAKVV D TG SKGYGFVRFGDESE+ R+MTEMNGV CS+R MRIG A K
Sbjct: 198 ASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPK 257
Query: 248 KAATGQQYQK----------ATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
K + +QY + T GSQ + D +NTTIFVGGLD VTD+ L+ F Q
Sbjct: 258 KPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQ 317
Query: 298 YGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQ---SD 354
+GE+V VKIPAGK CGFVQF++R+ A++A+ L+G +G Q++RLSWGRSP+NKQ
Sbjct: 318 FGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDS 377
Query: 355 QAQWNGGGYYGFAQGYEAYGY-APPTQDPNMYYGGFPGYGTYQQPGSYQQP 404
+QWNGG Y Q Y YGY A QD MY G + + G++QQP
Sbjct: 378 GSQWNGG--YNGRQNYGGYGYGASQNQDSGMYATGAAYGASSNRYGNHQQP 426
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 362 bits (928), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 199/397 (50%), Positives = 252/397 (63%), Gaps = 33/397 (8%)
Query: 31 QQQQQQHQTPVPPP--------------VGWTPQPVPPPSQQTQPYGVAP--------DA 68
+++ Q +P PPP + + P P PP Q + + +A
Sbjct: 36 EEENQPKTSPTPPPHWMRYPPTVIIPHQMMYAPPPFPPYHQYPNHHHLHHQSRGNKHQNA 95
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIF--GHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126
+ +++W+GDL WM+E+Y+ S F G E VS KVIRNK SEGYGF+EF SH
Sbjct: 96 FNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHD 155
Query: 127 AAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR-QDDGPDFTIFVGDLAADVTDYVLQE 185
A++VL+ FNGT MP+T+Q FRLNWA++ GE+R +++GPD +IFVGDL+ DV+D +L E
Sbjct: 156 VADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHE 215
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF Y SVK AKVV D TGRSKGYGFVRFGDE+E+ ++MTEMNGV CS+R MRIGPA
Sbjct: 216 TFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT 275
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
+K G Q Q N ++ E D NTTIFVGGLD SVTD+ LK F ++GE+V VK
Sbjct: 276 PRK-TNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVK 334
Query: 306 IPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQA---QWNGGG 362
IP GK CGFVQF NR AE+AL LNGT +G Q++RLSWGR+P+NKQ QW
Sbjct: 335 IPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQW-VDP 393
Query: 363 YYGFAQGYEAYGYAPPTQDPNMYYGG--FPGYGTYQQ 397
YYG Q Y YGY P DP MY +P YG +QQ
Sbjct: 394 YYG-GQFYNGYGYMVPQPDPRMYPAAPYYPMYGGHQQ 429
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 357 bits (917), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 188/332 (56%), Positives = 230/332 (69%), Gaps = 11/332 (3%)
Query: 74 RSLWIGDLQPWMEESYIASIF--GHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
+++W+GDLQ WM+E+Y+ S F E VS KVIRNK SEGYGF+EF SH A++V
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 132 LQTFNGTQMPSTEQNFRLNWATYGAGERR-QDDGPDFTIFVGDLAADVTDYVLQETFRAV 190
LQ FNG MP+T+Q FRLNWA++ GE+R +++GPD +IFVGDLA DV+D +L ETF
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 191 YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250
Y SVK AKVV D TGRSKGYGFVRFGDE+E+ ++MTEMNGV CS+R MRIGPA +K
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK-T 281
Query: 251 TGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGK 310
G Q Q + ++ E D NTTIFVGGLD SVTD+ LK F ++GE+V VKIP GK
Sbjct: 282 NGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK 341
Query: 311 RCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQA---QWNGGGYYGFA 367
CGFVQF NR AE+AL LNGT +G Q++RLSWGR+P+NKQ QW YYG
Sbjct: 342 GCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQW-VDPYYG-G 399
Query: 368 QGYEAYGYAPPTQDPNMYYGG--FPGYGTYQQ 397
Q Y YGY P DP MY +P YG +QQ
Sbjct: 400 QFYNGYGYMVPQPDPRMYPAAPYYPMYGGHQQ 431
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 353 bits (906), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 189/325 (58%), Positives = 228/325 (70%), Gaps = 16/325 (4%)
Query: 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAER 130
D +++LW+GDL WM+E+Y+ + F HT E S KVIRNKQT SEGYGF+EF+S +AAE
Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175
Query: 131 VLQTFNGTQMPSTEQNFRLNWATYGAGERR-QDDGPDFTIFVGDLAADVTDYVLQETFRA 189
LQ+F+G MP+ EQ FRLNWA++ GE+R ++GPD +IFVGDLA DV+D VL ETF
Sbjct: 176 ALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAG 235
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249
Y SVKGAKVV D TGRSKGYGFVRFGDE+E+ R+MTEMNG CS+R MR+G A K+A
Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
Query: 250 AT-GQQ-----YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVH 303
A GQQ A GS + + NN+TIFVGGLD VT++ L F +GE+V
Sbjct: 296 AAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVS 355
Query: 304 VKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQ--SDQA-QWNG 360
VKIP GK CGFVQFANR AE+A+ LNGT +G ++RLSWGRSP NKQ SD QWNG
Sbjct: 356 VKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNG 414
Query: 361 GGYYGFAQGYEAYGYAPPTQDPNMY 385
G Y QGY GYA QD NMY
Sbjct: 415 G--YSRGQGYNN-GYA--NQDSNMY 434
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 341 bits (875), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 192/345 (55%), Positives = 235/345 (68%), Gaps = 23/345 (6%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132
+R+LWIGDLQ W++E+Y+ S F TGE VS KVIRNK T EGYGFIEF+SHAAAER L
Sbjct: 23 VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
Query: 133 QTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
QT+NGTQMP TE FRLNWA++G+G++ D GPD +IFVGDLA DVTDY+LQETFR YS
Sbjct: 83 QTYNGTQMPGTELTFRLNWASFGSGQKV-DAGPDHSIFVGDLAPDVTDYLLQETFRVHYS 141
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK-AAT 251
SV+GAKVVTD +TGRSKGYGFV+F +ESE+ R+M EMNG+ CSTRPMRI A KK
Sbjct: 142 SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGV 201
Query: 252 GQQY-QKATYQNTQGSQG-----------ENDPNNTTIFVGGLDPSVTDDILKTVFGQYG 299
QQY KA Y T S E+D TTI V LD +VT++ LK F Q G
Sbjct: 202 QQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLG 261
Query: 300 ELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNK----QSDQ 355
E+++VKIPA K G+VQF R AE+A+ + G +G Q++R+SW ++P Q+D
Sbjct: 262 EVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWVTQADP 321
Query: 356 AQWNGGGYYGFAQGYEAYGYAPPTQDPNMY-YGGFPGYGTYQQPG 399
QWNG YG AYG TQDP++Y YGG+ GY Y Q G
Sbjct: 322 NQWNGYYGYGQGYDAYAYG---ATQDPSVYAYGGY-GYPQYPQQG 362
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 332 bits (851), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 192/399 (48%), Positives = 240/399 (60%), Gaps = 35/399 (8%)
Query: 21 QQWMAYQQ---QSQQQQQQHQTPVPPPVGWTPQPVPPPSQ---QTQPYG----------- 63
QQWMA Q + Q Q + P + P P Q Q YG
Sbjct: 38 QQWMAAMQYPPAAAMMMMQQQQMLMYPHQYVPYNQGPYQQHHPQLHQYGSYQQHQHQQHK 97
Query: 64 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFV 123
S D +++LW+GDL WM+E+Y+ S F HTGE S KVIRNK T+ SEGYGF+EF+
Sbjct: 98 AIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFL 157
Query: 124 SHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQ-DDGPDFTIFVGDLAADVTDYV 182
S AAAE VLQ ++G+ MP+++Q FR+NWA++ GE+R ++GPD ++FVGDL+ DVTD +
Sbjct: 158 SRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVL 217
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
L ETF Y SVK AKVV D TGRSKGYGFVRFGDE+E+ R++TEMNG CS R MR+G
Sbjct: 218 LHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVG 277
Query: 243 PAATKKAATGQQYQKATYQNTQGSQGEN-----------DPNNTTIFVGGLDPSVTDDIL 291
A K+A QQ + G G N + N TIFVGG+DP V D+ L
Sbjct: 278 IATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDL 337
Query: 292 KTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNK 351
+ F Q+GE+V VKIP GK CGFVQFA+R AE A+ LNGT +G ++RLSWGRSP NK
Sbjct: 338 RQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NK 396
Query: 352 Q---SDQAQWNGGGYYGFAQGYEAYGYAPPTQDPNMYYG 387
Q QWNGG Y GY G D N Y+G
Sbjct: 397 QWRGDSGQQWNGG--YSRGHGYNNGGGYANHHDSNNYHG 433
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 191/346 (55%), Gaps = 14/346 (4%)
Query: 12 QTSQYQQQHQQWMAYQQQSQQQQQQHQTPVPPPVGWTPQPVPPPSQQTQPYGVAPDASSD 71
+ + + +Q Q + +S + Q Q P+ P + S+ T YG + D +
Sbjct: 34 KDNSFNEQDDQEVDNDYKSNDEPVQSQDPISPNMASNESGN---SENTSNYGSSRDENVY 90
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
+LW+G+L+PW+ E++I ++ G+ V K+IRN+ T + GY F+EF S A
Sbjct: 91 QKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA 150
Query: 132 LQTFNGTQMPSTEQNFRLNWATYGA-GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAV 190
+ + N +P T F+LNWA+ G E+ +++IFVGDL+ +V ++ + F +
Sbjct: 151 M-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASR 209
Query: 191 YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250
Y+S K AK++TD T S+GYGFVRF DE++Q ++ EM G +C RP+R+G A K A
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA 269
Query: 251 TGQQYQKAT---------YQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
Y Q D N+T+FVGGL V+++ LK +F +GE+
Sbjct: 270 HVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEI 329
Query: 302 VHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347
V+VKIP GK CGFVQF NR AE A++ L G LG IRLSWGR+
Sbjct: 330 VYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 168/283 (59%), Gaps = 13/283 (4%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE---GYGFIEFVSHAAAERV 131
+LW+GDL+PWM+ ++I ++ E V+ KV+R+K ++ SE Y F++F S AAAER
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASS-SETLISYCFVQFSSSAAAERA 144
Query: 132 LQTFNGTQMPSTEQNFRLNWATYGAGERRQ--DDGPDFTIFVGDLAADVTDYVLQETFRA 189
L +N T +P F+LNWAT G + P+F+IFVGDL D L TFR+
Sbjct: 145 LMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRS 204
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249
+Y S AK++ D TG S+ YGFVRF E EQ ++ M G LC RP+RI A+ K
Sbjct: 205 IYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSR 264
Query: 250 A-----TGQQYQKATYQNTQGSQ--GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
A + + N Q +Q DP NTT+FVGGL ++++ L+ F +G ++
Sbjct: 265 ASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRIL 324
Query: 303 HVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWG 345
++KIP GK CGFVQ++ ++ AE+A++ + G +G IRL+WG
Sbjct: 325 NIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWG 367
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 166/331 (50%), Gaps = 60/331 (18%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEF-VSGKVIRNKQTNF----------SEGYGFIEFVS 124
L++GDL P +++ + I+ GE ++ +++ N N ++GY F++F S
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115
Query: 125 HAAAERVLQTFNGTQMPST-EQNFRLNWATYGAGERRQ-----DDGPDFTIFVGDLAADV 178
A L NG +P+ + +LNWAT G + +IFVGDLA +V
Sbjct: 116 STHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T+ L E F Y+S AK+V D+ TG SKGYGFV+F + EQ +++EM GV + R
Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234
Query: 239 MRIGPAATKK--AATGQQYQKATY----QNTQG----------SQGEN------------ 270
+++GP + ++ + Y +++ +N S G N
Sbjct: 235 IKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQF 294
Query: 271 --------------DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQ 316
DPNNTT+F+GGL VT+D L+ F +G +V+VKIP GK CGFVQ
Sbjct: 295 IYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQ 354
Query: 317 FANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347
+ +R AE A++ + G + +RLSWGRS
Sbjct: 355 YVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385
>sp|Q1RMJ7|TSAP1_BOVIN tRNA selenocysteine 1-associated protein 1 OS=Bos taurus
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 117/179 (65%), Gaps = 8/179 (4%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATKKA 249
S +G KVV D+ TG SKGYGFV+F DE EQ R++TE G + ++P+R+ A K +
Sbjct: 121 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKAS 178
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 22/183 (12%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P ++FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPE-YSLFVGDLTPDVD 108
Query: 288 DDILKTVFGQY------GELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQ-LGGQSI 340
D +L F + G++V + K GFV+F + ++AL+ G LG + +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPV 168
Query: 341 RLS 343
RLS
Sbjct: 169 RLS 171
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 276 TIFVGGLDPSVTDDILKTVFGQYGELVH-VKIPAGKRCG------FVQFANRTCAEQALS 328
++++G L+P + ++ + F GE V VKI + G FV+FA+ AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 329 VLNGTQLGG----QSIRL---SWGRSPSN 350
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQPDN 92
>sp|Q9NX07|TSAP1_HUMAN tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens
GN=TRNAU1AP PE=1 SV=1
Length = 287
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 117/179 (65%), Gaps = 8/179 (4%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATKKA 249
S +G KVV D+ TG SKGYGFV+F DE EQ R++TE G + ++P+R+ A K +
Sbjct: 121 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 22/183 (12%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P ++FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPE-YSLFVGDLTPDVD 108
Query: 288 DDILKTVFGQY------GELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQ-LGGQSI 340
D +L F + G++V + K GFV+F + ++AL+ G LG + +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 168
Query: 341 RLS 343
RLS
Sbjct: 169 RLS 171
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 276 TIFVGGLDPSVTDDILKTVFGQYGELVH-VKIPAGKRCG------FVQFANRTCAEQALS 328
++++G L+P + ++ + F GE V VKI + G FV+FA+ AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 329 VLNGTQLGG----QSIRL---SWGRSPSN 350
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQPDN 92
>sp|Q9QZI7|TSAP1_RAT tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus
GN=Trnau1ap PE=1 SV=1
Length = 287
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 116/179 (64%), Gaps = 8/179 (4%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATKKA 249
S +G KVV D+ TG SKGYGFV+F DE EQ R++TE G + +P+R+ A K +
Sbjct: 121 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 22/183 (12%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P ++FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPE-YSLFVGDLTPDVD 108
Query: 288 DDILKTVFGQY------GELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQ-LGGQSI 340
D +L F + G++V + K GFV+F + ++AL+ G LG + +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPV 168
Query: 341 RLS 343
RLS
Sbjct: 169 RLS 171
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 276 TIFVGGLDPSVTDDILKTVFGQYGELVH-VKIPAGKRCG------FVQFANRTCAEQALS 328
++++G L+P + ++ + F GE V VKI + G FV+FA+ AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 329 VLNGTQLGG----QSIRL---SWGRSPSN 350
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQPDN 92
>sp|Q80VC6|TSAP1_MOUSE tRNA selenocysteine 1-associated protein 1 OS=Mus musculus
GN=Trnau1ap PE=1 SV=2
Length = 287
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 115/179 (64%), Gaps = 8/179 (4%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATKKA 249
S +G KVV D TG SKGYGFV+F DE EQ R++TE G + +P+R+ A K +
Sbjct: 121 PSCRGGKVVLD-PTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P ++FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPE-YSLFVGDLTPDVD 108
Query: 288 DDILKTVFGQY------GELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQ-LGGQSI 340
D +L F + G++V K GFV+F + ++AL+ G LG + +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPV 168
Query: 341 RLS 343
RLS
Sbjct: 169 RLS 171
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 276 TIFVGGLDPSVTDDILKTVFGQYGELVH-VKIPAGKRCG------FVQFANRTCAEQALS 328
++++G L+P + ++ + F GE V VKI + G FV+FA+ AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 329 VLNGTQLGG----QSIRL---SWGRSPSN 350
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQPDN 92
>sp|Q5R462|TSAP1_PONAB tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 155 bits (391), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 116/179 (64%), Gaps = 8/179 (4%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + + F+LN+ TYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATKKA 249
S +G KVV D+ TG SKGYGFV+F DE EQ R++TE G + ++P+R+ A K +
Sbjct: 121 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y T G Q +N P ++FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNYV------TYGKQPDNSPE-YSLFVGDLTPDVD 108
Query: 288 DDILKTVFGQY------GELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQ-LGGQSI 340
D +L F + G++V + K GFV+F + ++AL+ G LG + +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 168
Query: 341 RLS 343
RLS
Sbjct: 169 RLS 171
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 276 TIFVGGLDPSVTDDILKTVFGQYGELVH-VKIPAGKRCG------FVQFANRTCAEQALS 328
++++G L+P + ++ + F GE V VKI + G FV+FA+ AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 329 VLNGTQLGG----QSIRL---SWGRSPSN 350
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYVTYGKQPDN 92
>sp|Q4KM14|TSP1L_DANRE tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio
GN=trnau1apl PE=2 SV=1
Length = 316
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 10/185 (5%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERV 131
+ SLW+GDL P+M+E++I F GE G K+I ++ T S GY F+E A+ +R
Sbjct: 5 MTSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRC 64
Query: 132 LQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRA 189
+Q NG +P + + F+LN+ATYG +R + GP+F++FVGDL ++V DY L + F
Sbjct: 65 VQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLK 121
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM-NGVLCSTRPMRIGPAATK- 247
+ S KGAKVVTD G S+GYGFV+F DE+EQ +++ E N +P+RI A K
Sbjct: 122 KFPSCKGAKVVTD-PYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKG 180
Query: 248 -KAAT 251
KA+T
Sbjct: 181 NKAST 185
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 98/240 (40%), Gaps = 50/240 (20%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + +++ F + + G K++T R TG S GY FV DE+ R +
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 228 EMNGVLC--STRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPS 285
+NG L S P + + ATY G + E P ++FVG L
Sbjct: 67 RLNGKLVPGSNPPRKF------------KLNYATY----GKRPEPGPE-FSVFVGDLTSE 109
Query: 286 VTDDILKTVF-GQYGELVHVKI---PAG--KRCGFVQFANRTCAEQALSVL-NGTQLGGQ 338
V D L F ++ K+ P G + GFV+F++ ++AL N + LGG+
Sbjct: 110 VDDYQLHQFFLKKFPSCKGAKVVTDPYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGK 169
Query: 339 SIRLSWGRSPSNKQSDQA------------------------QWNGGGYYGFAQGYEAYG 374
IR+S + NK S QW Y G+ GY Y
Sbjct: 170 PIRISIAVNKGNKASTYHNQNNTYNTNYQQQYYRQPYNSYYPQWGYDQYSGYNYGYNPYA 229
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 147/291 (50%), Gaps = 12/291 (4%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
R+L++G+L + E I +F G S K+I +N + Y F+EF H A L
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALA 66
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
NG ++ E ++NWAT + +++ D F +FVGDL+ ++T ++ F A +
Sbjct: 67 AMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAF-APFGK 122
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
+ A+VV D TG+SKGYGFV F ++ + ++ M G R +R A K A
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 254 QYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRC 312
+ T Q + ++ P N T++ GG+ +TD +++ F +G+++ +++ K
Sbjct: 183 TQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGY 242
Query: 313 GFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN-----KQSDQAQW 358
FV+F+ A A+ +NGT + G ++ WG+ + +Q D +QW
Sbjct: 243 SFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 293
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 27/202 (13%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220
+DDG T++VG+L+ DVT+ ++ + F + K K++T+ T+ + Y FV F +
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEHTS--NDPYCFVEFYEHR 59
Query: 221 EQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVG 280
+ ++ MNG + G++ K + T SQ ++ N+ +FVG
Sbjct: 60 DAAAALAAMNG----------------RKILGKEV-KVNWATTPSSQKKDTSNHFHVFVG 102
Query: 281 GLDPSVTDDILKTVFGQYGELVHVKIP------AGKRCGFVQFANRTCAEQALSVLNGTQ 334
L P +T + +K+ F +G++ ++ K GFV F N+ AE A+ + G
Sbjct: 103 DLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQW 162
Query: 335 LGGQSIRLSWG-RSPSNKQSDQ 355
LGG+ IR +W R P +S Q
Sbjct: 163 LGGRQIRTNWATRKPPAPKSTQ 184
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 167/350 (47%), Gaps = 35/350 (10%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALA 64
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 244 AATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
A K A Y+ T Q + ++ PNN T++ GG+ +T+ +++ F +G+++
Sbjct: 182 ATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIM 241
Query: 303 HVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGG 362
+++ K FV+F++ A A+ +NGT + G ++ WG+ + + Q N G
Sbjct: 242 EIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIG 301
Query: 363 Y----------YGFAQGYEAYGYAPPTQDPNMYYGGFPGYGTYQQPGSYQ 402
Y YG AQ Y PN + P YG Y QP S Q
Sbjct: 302 YPPTYGQWGQWYGNAQQIGQY-------VPNGWQ--VPAYGVYGQPWSQQ 342
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 163/348 (46%), Gaps = 37/348 (10%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR----NKQTNFSEG-----------YG 118
R+L++G+L + E I +F G S K+I +++ N S G Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADV 178
F+EF H A L NG ++ E ++NWAT + +++ D F +FVGDL+ ++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ M G R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 239 MRIGPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
+R A K A + T Q + ++ P N T++ GG+ +TD +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 244
Query: 298 YGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN-----KQ 352
+G+++ +++ K FV+F+ A A+ +NGT + G ++ WG+ + +Q
Sbjct: 245 FGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQ 304
Query: 353 SDQAQWNGGGYYGFAQGYEAYGYAPPTQDPNMYYGGF--PGYGTYQQP 398
D +QW G + Y P Q G+ P YG Y QP
Sbjct: 305 VDYSQW----------GQWSQVYGNPQQYGQYMANGWQVPPYGVYGQP 342
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 40/217 (18%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTD----RTTGRSKG------ 210
+DDG T++VG+L+ DVT+ ++ + F + K K++T+ R S G
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEQPDSRRVNSSVGFSVLQH 61
Query: 211 -----YGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQG 265
Y FV F + + ++ MNG + G++ K + T
Sbjct: 62 TSNDPYCFVEFYEHRDAAAALAAMNG----------------RKILGKEV-KVNWATTPS 104
Query: 266 SQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP------AGKRCGFVQFAN 319
SQ ++ N+ +FVG L P +T + +K+ F +G++ ++ K GFV F N
Sbjct: 105 SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 164
Query: 320 RTCAEQALSVLNGTQLGGQSIRLSWG-RSPSNKQSDQ 355
+ AE A+ + G LGG+ IR +W R P +S Q
Sbjct: 165 KLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ 201
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 128 bits (322), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 150/301 (49%), Gaps = 16/301 (5%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALA 64
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 244 AATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
A K A Y+ T Q + ++ P+N T++ GG+ +T+ +++ F +G+++
Sbjct: 182 ATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIM 241
Query: 303 HVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGG 362
+++ K FV+F + A A+ +NGT + G ++ WG+ + + Q N G
Sbjct: 242 EIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIG 301
Query: 363 Y 363
Y
Sbjct: 302 Y 302
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 145/305 (47%), Gaps = 38/305 (12%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL+P + E+++ IF G S +V R+ T S GY ++ F H A + ++
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T P + R+ W+ R++ G IF+ +L D+ + L +TF +V+ +
Sbjct: 99 LNYT--PIKGRLCRIMWSQRDPSLRKKGSG---NIFIKNLHPDIDNKALYDTF-SVFGDI 152
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ- 253
+K+ TD G+SKG+GFV F +E ++ +NG+L + + + + P ++K Q
Sbjct: 153 LSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 254 QYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---- 309
+ KA Y T ++V ++ TD+ + +F ++G +V +
Sbjct: 212 EETKAHY--------------TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGK 257
Query: 310 -KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGGYYGFAQ 368
K GFV + A +A+ LN ++L G+ +L GR AQ + +
Sbjct: 258 LKGFGFVNYEKHEDAVKAVEALNDSELNGE--KLYVGR---------AQKKNERMHVLKK 306
Query: 369 GYEAY 373
YEAY
Sbjct: 307 QYEAY 311
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 133/301 (44%), Gaps = 18/301 (5%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L P ++ + F G+ +S K+ ++ S+G+GF+ F
Sbjct: 118 PSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGK-SKGFGFVHFEEE 176
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA+ + NG + E + + + ++ +T ++V ++ ++ TD Q
Sbjct: 177 GAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQ 236
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
E F A + + A + D G+ KG+GFV + + ++++ +N + + +G A
Sbjct: 237 ELF-AKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA 294
Query: 245 ATKKA---ATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K +QY+ + QG N +FV LD SV D+ L+ F YG +
Sbjct: 295 QKKNERMHVLKKQYEAYRLEKMAKYQGVN------LFVKNLDDSVDDEKLEEEFAPYGTI 348
Query: 302 VHVKIP-----AGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQA 356
K+ K GFV F+ A +A++ N + G+ + ++ + ++S A
Sbjct: 349 TSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLA 408
Query: 357 Q 357
Q
Sbjct: 409 Q 409
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 16/200 (8%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+L++ ++ + +F G VS + ++ +G+GF+ + H A + ++
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEA 278
Query: 135 FNGTQMP--------STEQNFRLNWATYGAGERRQDDGPDF---TIFVGDLAADVTDYVL 183
N +++ + ++N R++ R + + +FV +L V D L
Sbjct: 279 LNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKL 338
Query: 184 QETFRAVYSSVKGAKVVTDRT-TGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+E F A Y ++ AKV+ RT G+SKG+GFV F E +++TE N + + +P+ +
Sbjct: 339 EEEF-APYGTITSAKVM--RTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Query: 243 PAATKKAATGQQYQKATYQN 262
A K Q Q+ +N
Sbjct: 396 IAQRKDVRRSQLAQQIQARN 415
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 251 TGQQYQKATYQNTQ-----GSQGENDPNNT-TIFVGGLDPSVTDDILKTVFGQYGELVHV 304
T +Q + Q+ Q GS+ ++ N++ +++VG L+PSV++ L +F G + +
Sbjct: 8 TAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSI 67
Query: 305 KIPAGKRC------GFVQFANRTCAEQALSVLNGTQLGGQSIRLSWG-RSPS 349
++ +V F + +A+ LN T + G+ R+ W R PS
Sbjct: 68 RVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPS 119
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 145/285 (50%), Gaps = 25/285 (8%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL P + E+++ IF G S +V R+ T S GY ++ F H AA+ ++
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T P + R+ W+ R++ G IF+ +L D+ + L +TF +V+ ++
Sbjct: 96 LNFT--PIKGKLCRIMWSQRDPSLRKKGAG---NIFIKNLHPDIDNKALYDTF-SVFGNI 149
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+KV TD TG+SKG+G+V F ++ ++ +NG+L + + + +GP +KK
Sbjct: 150 LSSKVATDE-TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKE----- 203
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGE---LVHVKIPAG-- 309
+++ ++ E N T +++ ++ TD + + ++G+ +V + P G
Sbjct: 204 -RESKFE-------EMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGEN 255
Query: 310 KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 354
K GFV F N A + + LN T+ GQ + ++ + +Q +
Sbjct: 256 KGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQE 300
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 133/302 (44%), Gaps = 20/302 (6%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L P ++ + F G +S KV + +T S+G+G++ F
Sbjct: 115 PSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEED 173
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
+A + NG + E + + + ++ +FT +++ ++ + TD +
Sbjct: 174 ESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFE 233
Query: 185 ETFRAVYSSVKGAKVVTDRT-TGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
E V K VV +RT G +KG+GFV F + + ++ + E+N +P+ +
Sbjct: 234 EL---VAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNR 290
Query: 244 AATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGE 300
A K + +QY+ + QG N +F+ LD S+ D L+ F YG
Sbjct: 291 AQKKYERQQELKKQYEATRMEKMAKYQGIN------LFIKNLDDSIDDKKLEEEFAPYGT 344
Query: 301 LVHVKIPA-----GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQ 355
+ K+ K GFV F+ A +A++ N + G+ + ++ + ++S
Sbjct: 345 ITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQL 404
Query: 356 AQ 357
AQ
Sbjct: 405 AQ 406
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 19/163 (11%)
Query: 114 SEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDF------ 167
++G+GF+ FV+H A + ++ N T+ Q +N A ER+Q+ +
Sbjct: 255 NKGFGFVNFVNHEDAVKCVEELNNTEFKG--QPLYVNRAQ-KKYERQQELKKQYEATRME 311
Query: 168 --------TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDE 219
+F+ +L + D L+E F A Y ++ AKV+T G+SKG+GFV F
Sbjct: 312 KMAKYQGINLFIKNLDDSIDDKKLEEEF-APYGTITSAKVMTTEN-GKSKGFGFVCFSTP 369
Query: 220 SEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQN 262
E +++TE N + + +P+ + A K Q Q+ +N
Sbjct: 370 EEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 412
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 137/294 (46%), Gaps = 26/294 (8%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
++K + G T +++ + D+ LK +FG++G + VK
Sbjct: 175 SRK-------------EREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVK 221
Query: 306 IPA-----GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 354
+ K GFV F A++A+ +NG +L G+ I + + +Q++
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 15/192 (7%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M++ + +FG G +S KV+ + ++ S+G+GF+ F H
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A++ + NG ++ E+ L + R ++V +L
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T
Sbjct: 304 GIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 137/294 (46%), Gaps = 26/294 (8%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
++K + G T +++ + D+ LK +FG++G + VK
Sbjct: 175 SRK-------------EREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVK 221
Query: 306 IPA-----GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 354
+ K GFV F A++A+ +NG +L G+ I + + +Q++
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 15/192 (7%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M++ + +FG G +S KV+ + ++ S+G+GF+ F H
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A++ + NG ++ E+ L + R ++V +L
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T
Sbjct: 304 GIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 137/294 (46%), Gaps = 26/294 (8%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
++K + G T +++ + D+ LK +FG++G + VK
Sbjct: 175 SRK-------------EREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 306 IPA-----GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 354
+ K GFV F A++A+ +NG +L G+ I + + +Q++
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 15/192 (7%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M++ + +FG G +S KV+ + ++ S+G+GF+ F H
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A++ + NG ++ E+ L + R ++V +L
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T
Sbjct: 304 GIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 137/294 (46%), Gaps = 26/294 (8%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
++K + G T +++ + D+ LK +FG++G + VK
Sbjct: 175 SRK-------------EREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 306 IPA-----GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 354
+ K GFV F A++A+ +NG +L G+ I + + +Q++
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 15/192 (7%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M++ + +FG G +S KV+ + ++ S+G+GF+ F H
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A++ + NG ++ E+ L + R ++V +L
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T
Sbjct: 304 GIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 136/294 (46%), Gaps = 26/294 (8%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
++K + G T +++ + D+ LK +FG++G + VK
Sbjct: 175 SRK-------------EREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 306 IPA-----GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 354
+ K GFV F A++A+ +NG +L G+ I + + +Q++
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 15/192 (7%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M++ + +FG G +S KV+ + ++ S+G+GF+ F H
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A++ + NG ++ E+ L + R ++V +L
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T
Sbjct: 304 GIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 136/294 (46%), Gaps = 26/294 (8%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
++K + G T +++ + D+ LK FGQYG + VK
Sbjct: 175 SRK-------------EREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVK 221
Query: 306 IPA-----GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 354
+ + GFV F A++A+ +NG L G++I + + +Q++
Sbjct: 222 VMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTE 275
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 15/192 (7%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M++ + FG G +S KV+ + S G+GF+ F H
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGK-SRGFGFVSFERHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A++ + NG + E+ L + R ++V +L
Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +T
Sbjct: 304 GIDDERLRKEFTP-FGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|Q503H1|TSAP1_DANRE tRNA selenocysteine 1-associated protein 1 OS=Danio rerio
GN=trnau1ap PE=2 SV=1
Length = 314
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 99/179 (55%), Gaps = 9/179 (5%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
+ SLW+G+L+P+M+E +I F GE V ++IR+K T + GYGF+E A ER
Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERC 60
Query: 132 LQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRA 189
L+ NG +P + F+L+ + YG +Q + F++FV DL DV D +L E F
Sbjct: 61 LRKVNGKPLPGATPPKRFKLSRSNYG----KQGESSTFSLFVSDLTPDVDDGMLYEFFHY 116
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATK 247
+SS K+V D G SK GFV F E EQ R++ ++ G + +R+ A+++
Sbjct: 117 HFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 23/197 (11%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++G+L + + + F + +V +++ D+ TG++ GYGFV D++ R +
Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT + ++ Y G QGE+ + ++FV L P V
Sbjct: 63 KVNG-----KPL---PGATPPKRF--KLSRSNY----GKQGES--STFSLFVSDLTPDVD 106
Query: 288 DDILKTVFGQY------GELVHVKIPAGKRCGFVQFANRTCAEQALSVLNG-TQLGGQSI 340
D +L F + G++V K CGFV F + ++AL L G T LG +++
Sbjct: 107 DGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESEREQKRALVDLQGATGLGKKAL 166
Query: 341 RLSWGRSPSNKQSDQAQ 357
RLS S NK+ + ++
Sbjct: 167 RLSLASSRVNKKKESSE 183
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 145/319 (45%), Gaps = 28/319 (8%)
Query: 41 VPPPVGWTPQPVPPPSQQTQPYGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEF 100
VP P T VP P VA + SL+ GDL P + E+++ +F H
Sbjct: 18 VPSPTAQTSVQVPVSIPLPSPVVVADQTHPNS--SLYAGDLDPKVTEAHLFDLFKHVANV 75
Query: 101 VSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR 160
VS +V R+ Q S GY +I F + A R ++ N T P ++ R+ + R
Sbjct: 76 VSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYT--PLFDRPIRIMLSNRDPSTRL 132
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220
G IF+ +L A + + L ETF + + ++ KV D TGRSKGYGFV+F E
Sbjct: 133 SGKG---NIFIKNLDASIDNKALFETFSS-FGTILSCKVAMD-VTGRSKGYGFVQFEKEE 187
Query: 221 EQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVG 280
++ ++NG+L + + + +G ++ ++A +NT P T ++V
Sbjct: 188 SAQAAIDKLNGMLMNDKQVFVGHFIRRQ-------ERARDENTP------TPRFTNVYVK 234
Query: 281 GLDPSVTDDILKTVFGQYGELVHVKI----PAGKRC-GFVQFANRTCAEQALSVLNGTQL 335
L + +D L+ FG++G + + RC GFV F A A+ +NG L
Sbjct: 235 NLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISL 294
Query: 336 GGQSIRLSWGRSPSNKQSD 354
G + + + S ++ +
Sbjct: 295 GDDVLYVGRAQKKSEREEE 313
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 149/300 (49%), Gaps = 24/300 (8%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G +S KV + T S+GYGF++F
Sbjct: 128 PSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKE 186
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG---PDFT-IFVGDLAADVTDY 181
+A+ + NG M + +Q F ++ ER +D+ P FT ++V +L ++ +
Sbjct: 187 ESAQAAIDKLNGMLM-NDKQVFVGHFIRRQ--ERARDENTPTPRFTNVYVKNLPKEIGED 243
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L++TF + + A V+ D++ G S+ +GFV F ++ +MNG+ + +
Sbjct: 244 ELRKTF-GKFGVISSAVVMRDQS-GNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYV 301
Query: 242 GPA---ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A + ++ +++++ + SQG N +++ LD SV D+ LK +F +Y
Sbjct: 302 GRAQKKSEREEELRRKFEQERINRFEKSQGAN------LYLKNLDDSVDDEKLKEMFSEY 355
Query: 299 GELVHVKI---PAG--KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQS 353
G + K+ P G + GFV ++N A +ALS +NG +G + + ++ + ++++
Sbjct: 356 GNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRA 415
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 136/294 (46%), Gaps = 26/294 (8%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
++K + G T +++ + D+ LK +FG+YG + VK
Sbjct: 175 SRK-------------EREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVK 221
Query: 306 IPA-----GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 354
+ K GFV F A++A+ +NG + G+S+ + + +Q++
Sbjct: 222 VMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTE 275
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 15/192 (7%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M + + +FG G +S KV+ + S+G+GF+ F H
Sbjct: 185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGK-SKGFGFVSFERHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A++ + NG M E+ L + R ++V +L
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T
Sbjct: 304 GIDDERLRKEFLP-FGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 135/269 (50%), Gaps = 27/269 (10%)
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
G SL++GDL + +S + FG G V+ +V R+ T S GYG++ F + A R
Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 132 LQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
+Q N +P + R+ ++ RR G IF+ +L + L +TF + +
Sbjct: 94 IQELN--YIPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFSS-F 147
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAAT 251
++ KV D ++G+SKGYGFV++ +E +++ ++NG+L + + + +GP +
Sbjct: 148 GNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRR---- 202
Query: 252 GQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL---VHVKIPA 308
Q + +T T+ T ++V L S TDD LK FG+YG++ V +K
Sbjct: 203 --QERDSTANKTK---------FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE 251
Query: 309 GKR--CGFVQFANRTCAEQALSVLNGTQL 335
GK GFV F N A +A+ LNG +
Sbjct: 252 GKSKGFGFVNFENADDAARAVESLNGHKF 280
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 145/306 (47%), Gaps = 25/306 (8%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G VS KV + S+GYGF+++ +
Sbjct: 116 PSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQ-SKGYGFVQYANE 174
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQD-----DGPDFT-IFVGDLAADVT 179
+A++ ++ NG + + G RRQ+ + FT ++V +LA T
Sbjct: 175 ESAQKAIEKLNGMLLNDKQ-------VYVGPFLRRQERDSTANKTKFTNVYVKNLAESTT 227
Query: 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239
D L+ F Y + A V+ D G+SKG+GFV F + + R++ +NG +
Sbjct: 228 DDDLKNAF-GEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEW 285
Query: 240 RIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYG 299
+G A KK+ + + QN + + + ++ ++V LDPS++D+ LK +F +G
Sbjct: 286 YVG-RAQKKSERETELRVRYEQNLK--EAADKFQSSNLYVKNLDPSISDEKLKEIFSPFG 342
Query: 300 ELVHVKI---PAG--KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWG-RSPSNKQS 353
+ K+ P G K GFV FA A +A+S L+G + + + ++ R +
Sbjct: 343 TVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVR 402
Query: 354 DQAQWN 359
QAQ++
Sbjct: 403 LQAQFS 408
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP---AGKRC---GFVQFANRTCAEQAL 327
NT+++VG LD +VTD L FGQ G +V V++ +R G+V F N A +A+
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 328 SVLNGTQLGGQSIRLSWG-RSPSNKQS 353
LN L G+ IR+ + R PS ++S
Sbjct: 95 QELNYIPLYGKPIRVMYSHRDPSVRRS 121
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 139/285 (48%), Gaps = 26/285 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL P + ES++ +F + +V R+ T+ S GY ++ F + A R +++
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMES 118
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N P ++ R+ + R G +F+ +L A + + L ETF + + ++
Sbjct: 119 LNYA--PIRDRPIRIMLSNRDPSTRLSGKG---NVFIKNLDASIDNKALYETFSS-FGTI 172
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV D GRSKGYGFV+F E ++ ++NG+L + + + +G +
Sbjct: 173 LSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR------- 224
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL---VHVKIPAG-- 309
Q+ S+ P+ T ++V L +TDD LK FG+YG++ V +K +G
Sbjct: 225 ------QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNS 278
Query: 310 KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 354
+ GFV F + A A+ +NG LG + + + S+++ +
Sbjct: 279 RSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 323
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 140/304 (46%), Gaps = 32/304 (10%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G +S KV + S+GYGF++F
Sbjct: 138 PSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKE 196
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG-------PDFT-IFVGDLAAD 177
A+ + NG + + +Q F G RRQD P FT ++V +L +
Sbjct: 197 ETAQAAIDKLNGMLL-NDKQVF------VGHFVRRQDRARSESGAVPSFTNVYVKNLPKE 249
Query: 178 VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237
+TD L++TF Y + A V+ D++ G S+ +GFV F ++ +MNG+
Sbjct: 250 ITDDELKKTF-GKYGDISSAVVMKDQS-GNSRSFGFVNFVSPEAAAVAVEKMNGISLGED 307
Query: 238 PMRIGPA---ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTV 294
+ +G A + ++ +++++ + QG N +++ LD SV D+ LK +
Sbjct: 308 VLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN------LYLKNLDDSVNDEKLKEM 361
Query: 295 FGQYGELVHVKIPAGKR-----CGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349
F +YG + K+ + GFV ++N A A+ +NG +G + + ++ +
Sbjct: 362 FSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKE 421
Query: 350 NKQS 353
+Q+
Sbjct: 422 ERQA 425
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 129/272 (47%), Gaps = 26/272 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++G+L P + E+ + +F G S +V R+ T S GY ++ + + A E+ L+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T + + R+ W+ R+ G +F+ +L + + L +TF A + ++
Sbjct: 122 LNYTLIKG--RPCRIMWSQRDPALRKTGQG---NVFIKNLDVAIDNKALHDTF-AAFGNI 175
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV D G SKGYGFV + + +++ +NG+L + + + +G KK
Sbjct: 176 LSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK------ 228
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRC-- 312
+ Q E N T I+V ++P VTDD +T+F +YG++ + +
Sbjct: 229 -------DRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGK 281
Query: 313 ----GFVQFANRTCAEQALSVLNGTQLGGQSI 340
GFV F + A +A+ LN + GQ++
Sbjct: 282 SRGFGFVNFTSHEDASKAVQELNEKEFHGQNL 313
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/245 (19%), Positives = 94/245 (38%), Gaps = 58/245 (23%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ ++ P + + ++F G+ S + R+++T S G+GF+ F SH A + +Q
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQE 302
Query: 135 FN-----------GTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVL 183
N G E+ L + A + + +++ +L +V D L
Sbjct: 303 LNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKL 362
Query: 184 QETFRAVYSSVKGAKVVTDRTT-------------------------------------- 205
++ F + + + AKV+ D T
Sbjct: 363 RQLF-SEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGE 421
Query: 206 --------GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQK 257
G+SKG+GFV F + + +++ EMN + + +P+ + A K Q Q
Sbjct: 422 DSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQS 481
Query: 258 ATYQN 262
+N
Sbjct: 482 IQARN 486
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI---PAGKRC---GFVQFANRTCAEQAL 327
+ +++VG LDPSVT+ +L +F Q G + +++ +R +V + E+AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 328 SVLNGTQLGGQSIRLSWG-RSPSNKQSDQ 355
LN T + G+ R+ W R P+ +++ Q
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGQ 148
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 126/271 (46%), Gaps = 25/271 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++G+L P + E+ + +F G S +V R+ T S GY ++ + + A ++ +Q
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N ++ + R+ W+ R++ G IF+ +L + + L ETF + + V
Sbjct: 111 LNYAEING--RPCRIMWSERDPAIRKKGSG---NIFIKNLHPAIDNKALHETF-STFGEV 164
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV D G S+G+GFV F +ES+ ++ +NG+L + + + KK +
Sbjct: 165 LSCKVALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISK- 222
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG----- 309
E N T I+V +D TD+ + +F QYGE+V +
Sbjct: 223 ------------LEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKP 270
Query: 310 KRCGFVQFANRTCAEQALSVLNGTQLGGQSI 340
K GFV F + A +A+ LNG + Q++
Sbjct: 271 KGFGFVNFVDHNAAAKAVEELNGKEFKSQAL 301
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 139/301 (46%), Gaps = 18/301 (5%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L P ++ + F GE +S KV ++ N S G+GF+ F
Sbjct: 130 PAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGN-SRGFGFVHFKEE 188
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
+ A+ ++ NG M E ++ + ++ +FT I+V ++ + TD +
Sbjct: 189 SDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFE 248
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+ F + Y + A + D G+ KG+GFV F D + +++ E+NG ++ + +G A
Sbjct: 249 QLF-SQYGEIVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRA 306
Query: 245 ATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K +QY++ + QG N +F+ LD S+ D+ LK F YG +
Sbjct: 307 QKKYERAEELKKQYEQYRLEKLAKFQGVN------LFIKNLDDSIDDEKLKEEFAPYGTI 360
Query: 302 VHVKIPA-----GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQA 356
++ K GFV F++ A +A++ N + G+ + ++ + ++S A
Sbjct: 361 TSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLA 420
Query: 357 Q 357
Q
Sbjct: 421 Q 421
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ ++ + +F GE VS + ++ + +G+GF+ FV H AA + ++
Sbjct: 232 NIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGK-PKGFGFVNFVDHNAAAKAVEE 290
Query: 135 FNGTQMPSTEQNFRLNWATYGAGER--------RQDDGPDF---TIFVGDLAADVTDYVL 183
NG + S Y E R + F +F+ +L + D L
Sbjct: 291 LNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKL 350
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+E F A Y ++ A+V+ D+ G SKG+GFV F E ++MTE N + + +P+ +
Sbjct: 351 KEEF-APYGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAI 408
Query: 244 AATKKAATGQQYQKATYQN 262
A K Q Q+ +N
Sbjct: 409 AQRKDVRRSQLAQQIQARN 427
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI------PAGKRCGFVQFANRTCAEQA 326
NN +++VG LDP++T+ +L VF G + +++ A +V + + ++A
Sbjct: 48 NNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKA 107
Query: 327 LSVLNGTQLGGQSIRLSWG-RSPSNKQS 353
+ LN ++ G+ R+ W R P+ ++
Sbjct: 108 IQELNYAEINGRPCRIMWSERDPAIRKK 135
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 133/285 (46%), Gaps = 26/285 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++G+L P + E+ + IF G S +V R+ T S GY ++ F++ A ER ++
Sbjct: 48 SLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 107
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + + + R+ W+ RR G IF+ +L A + + L +TF A + ++
Sbjct: 108 LNYSLI--RNRPCRIMWSQRDPALRRTGQG---NIFIKNLDAGIDNKALHDTF-AAFGNI 161
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV T+ T S GYGFV + ++ +NG+L + + + +G +K
Sbjct: 162 LSCKVATNETG--SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRK------ 213
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP-----AG 309
Q E N T ++ +DP VTDD + +F ++G++ +
Sbjct: 214 -------ERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKS 266
Query: 310 KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 354
K GFV F + A++A+ L+ + GQ + ++ + S ++ +
Sbjct: 267 KGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEE 311
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 84/184 (45%), Gaps = 14/184 (7%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++ ++ P + + +F G+ S V++ + S+G+GF+ F H A++ +
Sbjct: 228 NVYAKNVDPEVTDDEFEKLFTKFGKITSC-VLQRDEDGKSKGFGFVNFEDHNEAQKAVDE 286
Query: 135 -----FNGTQM------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVL 183
F G ++ +E+ L + A + +++ ++ D L
Sbjct: 287 LHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERL 346
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+E F A + ++ K++ +G S+G+GFV + E ++++EMNG + RP+ +
Sbjct: 347 REEF-APFGAITSCKIMRA-PSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVAL 404
Query: 244 AATK 247
A K
Sbjct: 405 AQRK 408
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 131/285 (45%), Gaps = 25/285 (8%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++G+L P + E+ + +F G S +V R+ T S GY ++ + + A E+ L+
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T + + R+ W+ R+ G IF+ +L A + + L +TF A + ++
Sbjct: 121 LNYTLIKG--RPCRIMWSQRDPALRKTGAG---NIFIKNLDAAIDNKALHDTF-AAFGNI 174
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV D G SKGYGFV + + +++ +NG+L + + + +G KK
Sbjct: 175 LSCKVAQDE-HGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK------ 227
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP-----AG 309
+ Q E N T ++V ++ VTD+ + +F ++GE+ +
Sbjct: 228 -------DRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKS 280
Query: 310 KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 354
+ GFV F A QA+ LNG GQ + + + ++ +
Sbjct: 281 RGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEE 325
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 114/245 (46%), Gaps = 13/245 (5%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G +S KV +++ N S+GYGF+ + +
Sbjct: 140 PALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETD 198
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA + ++ NG + + + + ++ +FT ++V ++ +VTD +
Sbjct: 199 EAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFR 258
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
E F A + V + + D+ G+S+G+GFV F +++ E+NG + + +G A
Sbjct: 259 ELF-AKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRA 316
Query: 245 ATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K + + Y+ A + QG N +++ L V DD L+ +F +YG +
Sbjct: 317 QKKHEREEELRKSYEAARLEKANKYQGVN------LYIKNLGDDVDDDKLRAMFSEYGPI 370
Query: 302 VHVKI 306
K+
Sbjct: 371 TSAKV 375
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 53/230 (23%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ ++ + + +F GE S + R+ Q S G+GF+ F +H AA + +
Sbjct: 242 NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARD-QEGKSRGFGFVNFTTHEAAAQAVDE 300
Query: 135 FNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVL 183
NG E+ L + A + + +++ +L DV D L
Sbjct: 301 LNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKL 360
Query: 184 QETFRAVYSSVKGAKVVTD----------------------------------------R 203
+ F + Y + AKV+ D R
Sbjct: 361 RAMF-SEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDR 419
Query: 204 TTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
G+SKG+GFV F + + +++TEMN + +P+ + A K Q
Sbjct: 420 KLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQ 469
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 138/295 (46%), Gaps = 27/295 (9%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P AS SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + +
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A ER L+ N T + + R+ W+ R+ G +F+ +L A + + L +
Sbjct: 104 ADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHD 158
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G
Sbjct: 159 TF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI 216
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
+KK + Q E N T +++ +D VTD+ + +F ++GE+
Sbjct: 217 SKK-------------DRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSAT 263
Query: 306 IP-----AGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQ 355
+ + GFV F+ A+ A+ +N ++ GQ +L GR+ + ++
Sbjct: 264 LSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQ--KLYVGRAQKKHEREE 316
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 63/248 (25%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I ++ + + +F GE S + R+ Q S G+GF+ F +H +A+ +
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDE 292
Query: 135 FNGTQMP-------------STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDY 181
N ++ E+ R + + + G ++V +L DV D
Sbjct: 293 MNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQG--VNLYVKNLTDDVDDE 350
Query: 182 VLQETFRAVYSSVKGAKVVTDRTT------------------------------------ 205
L+E F + + ++ AKV+ D T
Sbjct: 351 KLRELF-SPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEE 409
Query: 206 ----------GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQY 255
G+SKG+GFV F E +++TEMN + + +P+ + A K Q
Sbjct: 410 EPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLE 469
Query: 256 QKATYQNT 263
+NT
Sbjct: 470 ASIQARNT 477
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 134/278 (48%), Gaps = 27/278 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T + + R+ W+ R+ G +F+ +L + + + L +TF A + ++
Sbjct: 112 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNI 165
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV D G SKGYGFV + ++ +NG+L + + + +G +KK
Sbjct: 166 LSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK------ 218
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI---PAGKR 311
+ Q E N T I++ +DP VT++ + +F Q+GE+ + P GK
Sbjct: 219 -------DRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKS 271
Query: 312 --CGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347
GFV ++ A+ A+ ++ ++ Q +L GR+
Sbjct: 272 RGFGFVNYSTHESAQAAVDEMHDKEVKTQ--KLYVGRA 307
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 19/239 (7%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I +L ++ + F G +S KV +++ N S+GYGF+ + + AA ++
Sbjct: 140 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKH 198
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYS- 192
NG + + + + + + +FT I++ ++ DVT +E FR ++
Sbjct: 199 VNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVT----EEEFRKIFEQ 254
Query: 193 --SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK--- 247
+ A + D G+S+G+GFV + ++ EM+ T+ + +G A K
Sbjct: 255 FGEITSATLSRD-PEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHER 313
Query: 248 KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI 306
+ +QY+ A + QG N ++V L V D+ L+ +FG YG + K+
Sbjct: 314 EEELRKQYEAARLEKASKYQGVN------LYVKNLTDDVDDEKLRELFGPYGTITSAKV 366
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 93/254 (36%), Gaps = 69/254 (27%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I ++ P + E IF GE S + R+ + S G+GF+ + +H +A+ +
Sbjct: 233 NIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGK-SRGFGFVNYSTHESAQAAVDE 291
Query: 135 FNGTQMPS-------------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDY 181
+ ++ + E+ R + + + G ++V +L DV D
Sbjct: 292 MHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQG--VNLYVKNLTDDVDDE 349
Query: 182 VLQETFRAVYSSVKGAKVVTDRT------------------------------------- 204
L+E F Y ++ AKV+ D T
Sbjct: 350 KLRELF-GPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKES 408
Query: 205 ---------------TGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249
G+SKG+GFV F E +++TEMN + + +P+ + A K
Sbjct: 409 DEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 468
Query: 250 ATGQQYQKATYQNT 263
Q +NT
Sbjct: 469 RRSQLEASIQARNT 482
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 138/295 (46%), Gaps = 27/295 (9%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A+ SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + +
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A ER L+ N T + + R+ W+ R+ G +F+ +L A + + L +
Sbjct: 104 ADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHD 158
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G
Sbjct: 159 TF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI 216
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
+KK + Q E N T +++ +D VTD+ + +F ++GE+
Sbjct: 217 SKK-------------DRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSAT 263
Query: 306 IP-----AGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQ 355
+ + GFV F+ A+ A+ +N ++ GQ +L GR+ + ++
Sbjct: 264 LSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQ--KLYVGRAQKKHEREE 316
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 61/246 (24%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I ++ + + +F GE S + R+ Q S G+GF+ F +H +A+ +
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDE 292
Query: 135 FNGTQMP-------------STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDY 181
N ++ E+ R + + + G ++V +L DV D
Sbjct: 293 MNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQG--VNLYVKNLTDDVDDE 350
Query: 182 VLQETFRAVYSSVKGAKVVTDRTT------------------------------------ 205
L+E F + + ++ AKV+ D T
Sbjct: 351 KLRELF-SPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEA 409
Query: 206 --------GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQK 257
G+SKG+GFV F E +++TEMN + + +P+ + A K Q
Sbjct: 410 KKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 469
Query: 258 ATYQNT 263
+NT
Sbjct: 470 IQARNT 475
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 141/308 (45%), Gaps = 38/308 (12%)
Query: 56 SQQTQPYGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE 115
S P G AP ++S L++G+L P + E+ + +F G S +V R+ T S
Sbjct: 67 SSVATPSGTAPTSAS-----LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSL 121
Query: 116 GYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLA 175
GY ++ F + E+ L N T + + R+ W+ R+ G +F+ +L
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKG--RPCRIMWSQRDPSLRKMGTG---NVFIKNLD 176
Query: 176 ADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235
+ + L +TF A + + KV D G +KGYGFV F ++ +NG+L +
Sbjct: 177 PAIDNKALHDTFSA-FGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLN 234
Query: 236 TRPMRIGPAATKKAATGQ-QYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTV 294
+ + +G +++ + + KA + N +++ LD +T+ +
Sbjct: 235 DKKVYVGHHVSRRERQSKVEALKANFTN--------------VYIKNLDTEITEQEFSDL 280
Query: 295 FGQYGELVHVKI-------PAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347
FGQ+GE+ + + P G GFV +AN CA++A+ LN + G+ +L GR+
Sbjct: 281 FGQFGEITSLSLVKDQNDKPRG--FGFVNYANHECAQKAVDELNDKEYKGK--KLYVGRA 336
Query: 348 PSNKQSDQ 355
+ ++
Sbjct: 337 QKKHEREE 344
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I +L + E + +FG GE S ++++ Q + G+GF+ + +H A++ +
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDE 320
Query: 135 FNGTQMP-------------STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDY 181
N + E+ R + + + G +F+ +L +V D
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQG--VNLFIKNLQDEVDDE 378
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+ F A + ++ AK++TD G+SKG+GFV + E +++TEMN + + +P+ +
Sbjct: 379 RLKAEFSA-FGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Query: 242 GPAATKKAATGQ 253
A K+ Q
Sbjct: 437 ALAQRKEVRRSQ 448
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 135/310 (43%), Gaps = 39/310 (12%)
Query: 36 QHQTPVPPPVGWTPQPVPPPSQQTQPYGVAPDASSDGIRSLWIGDLQPWMEESYIASIFG 95
++QT P G TP P Q + SL++G+L P + E+ + +F
Sbjct: 41 EYQTADPDTAGPTPSSAAPHPQSSA--------------SLYVGELDPSVTEAMLFELFS 86
Query: 96 HTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYG 155
G S +V R+ T S GY ++ + S + E+ L+ N T + + R+ W+
Sbjct: 87 QIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKG--RPCRIMWSQRD 144
Query: 156 AGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVR 215
R+ G +F+ +L + + L +TF A + ++ KV D G SKGYGFV
Sbjct: 145 PALRKTGQG---NVFIKNLDVAIDNKALHDTF-AAFGNILSCKVAQDE-NGNSKGYGFVH 199
Query: 216 FGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNT 275
+ + +++ +N +L + + + +G KK + Q E N T
Sbjct: 200 YETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKK-------------DRQSKFEEMKANFT 246
Query: 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIP-----AGKRCGFVQFANRTCAEQALSVL 330
I+V + TD+ + +F +YG++ + + GFV F CA +A+ L
Sbjct: 247 NIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEEL 306
Query: 331 NGTQLGGQSI 340
NG + GQ +
Sbjct: 307 NGKEFRGQDL 316
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 111/236 (47%), Gaps = 13/236 (5%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I +L ++ + F G +S KV +++ N S+GYGF+ + + AA + ++
Sbjct: 154 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAAAQAIKH 212
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSS 193
N + + + + ++ +FT I+V +++ + TD ++ F A Y
Sbjct: 213 VNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLF-AKYGD 271
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK---KAA 250
V + + D + G+S+G+GFV F +++ E+NG + + +G A K +
Sbjct: 272 VTSSSLARD-SEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEE 330
Query: 251 TGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI 306
+ Y+ A + QG N +++ L + DD L+ +F +YG + K+
Sbjct: 331 LRKSYEAARLEKANKYQGVN------LYIKNLADDIDDDKLRQMFSEYGPITSAKV 380
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/234 (18%), Positives = 87/234 (37%), Gaps = 57/234 (24%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ ++ + +F G+ S + R+ + S G+GF+ F +H A + ++
Sbjct: 247 NIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGK-SRGFGFVNFTTHECAAKAVEE 305
Query: 135 FNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVL 183
NG + E+ L + A + + +++ +LA D+ D L
Sbjct: 306 LNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKL 365
Query: 184 QETFRAVYSSVKGAKVVTD----------------------------------------- 202
++ F + Y + AKV+ D
Sbjct: 366 RQMF-SEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTEK 424
Query: 203 ---RTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
R G+SKG+GFV F + + +++ EMN + +P+ + A K Q
Sbjct: 425 KGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQ 478
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 135/295 (45%), Gaps = 30/295 (10%)
Query: 51 PVPPPSQQTQPYGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQ 110
P +Q + G+A +++S L++G+L P + E+ + IF G+ S +V R+
Sbjct: 49 PADSAEEQGESSGIAENSAS-----LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAV 103
Query: 111 TNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIF 170
+ S GY ++ + E+ ++ N T P + R+ W+ RR DG IF
Sbjct: 104 SKKSLGYAYVNYHKLEDGEKAIEELNYT--PVEGRPCRIMWSQRDPSARRSGDG---NIF 158
Query: 171 VGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230
+ +L + + L +TF A + + KV TD G+SK +GFV + E ++ +N
Sbjct: 159 IKNLHPAIDNKALHDTFSA-FGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESVN 216
Query: 231 GVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDI 290
G+L + R + +G +KK + + E N T I+V +D + T+
Sbjct: 217 GMLLNDREVYVGKHVSKK-------------DRESKLEEMKANYTNIYVKNIDLAYTEKE 263
Query: 291 LKTVFGQYGELVHVKIP-----AGKRCGFVQFANRTCAEQALSVLNGTQLGGQSI 340
+ +F +G++ + + K GFV F A +A+ LN ++ GQ I
Sbjct: 264 FEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKI 318
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 146/331 (44%), Gaps = 18/331 (5%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A G +++I +L P ++ + F G+ +S KV + S+ +GF+ + +
Sbjct: 147 PSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQ-SKCFGFVHYETE 205
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA+ +++ NG + E + + + ++ ++T I+V ++ T+ +
Sbjct: 206 EAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFE 265
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
E F A + + + D G+SKG+GFV F + +++ E+N + + + +G A
Sbjct: 266 ELF-APFGKITSIYLEKD-AEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRA 323
Query: 245 ATKKAAT---GQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K+ T +QY+ + QG N +FV LD + + L+ F +G +
Sbjct: 324 QKKRERTEELKKQYEAVRLEKLSKYQGVN------LFVKNLDEQIDSEKLEEEFKPFGTI 377
Query: 302 VHVKI---PAGKR--CGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQA 356
K+ AGK GFV F+ A +A++ +N + G+ + ++ + ++S
Sbjct: 378 TSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLE 437
Query: 357 QWNGGGYYGFAQGYEAYGYAPPTQDPNMYYG 387
Q Q A G P P M+YG
Sbjct: 438 QQIQARNQMRMQNAAAAGGLPGQFMPPMFYG 468
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 136/292 (46%), Gaps = 26/292 (8%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
ASS + SL++GDL + E+ + F G +S +V R+ T S GY ++ F A
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AER L T N + + R+ W+ R+ G +F+ +L + + L +TF
Sbjct: 65 AERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF 119
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
A + ++ KVV D SKGY FV F + +++ +MNG+L + R + +G ++
Sbjct: 120 SA-FGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 248 KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI- 306
K + G T +++ V D+ LK +F Q+G+ + VK+
Sbjct: 177 K-------------EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 223
Query: 307 --PAGKR--CGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 354
P GK GFV + A +A+ +NG ++ G+ I + + +Q++
Sbjct: 224 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 146/300 (48%), Gaps = 26/300 (8%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+GY F+ F +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDD----GPDFT-IFVGDLAADVTD 180
AA++ ++ NG + + ++ + + + R+ + +FT +++ + +V D
Sbjct: 149 EAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDD 204
Query: 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240
L+E F + + KV+ D G+SKG+GFV + + +++ EMNG S + +
Sbjct: 205 ESLKELF-SQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 241 IGPAATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
+G A K +A +++++ + QG N +++ LD ++ D+ L+ F
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEKLRKEFSP 316
Query: 298 YGELVHVKIPA----GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQS 353
+G + K+ K GFV F++ A +A++ +NG +G + + ++ + +++
Sbjct: 317 FGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 18/202 (8%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + +++ + +F G+ +S KV+R+ S+G+GF+ + H
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A + ++ NG ++ E+ L + R +++ +L
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +
Sbjct: 304 TIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 237 RPMRIGPAATK---KAATGQQY 255
+P+ + A K KA QY
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY 382
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 135/278 (48%), Gaps = 27/278 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++G+L+P + E+ + IF G S +V R+ TN S GY ++ F H A + ++
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T + + R+ W+ R++ G I++ +L + + L ETF + + ++
Sbjct: 99 LNYTLIKG--KPCRIMWSQRDPSLRKKGSG---NIYIKNLHPAIDNKSLHETF-STFGNI 152
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV TD G S+G+GFV F +ES+ ++ ++G+L + + + + +KK
Sbjct: 153 LSCKVATDE-NGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKK------ 205
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL---VHVKIPAGKR 311
+ Q E T ++V +D + + + +FG+YG++ V K GK
Sbjct: 206 -------DRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKL 258
Query: 312 --CGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347
GFV F + A +A+ LN + GQ +L GR+
Sbjct: 259 RGFGFVNFEDHAAAAKAVDELNELEFKGQ--KLYVGRA 294
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 24/348 (6%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L P ++ + F G +S KV + + S G+GF+ F +
Sbjct: 118 PSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENE 176
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
+ A ++ +G M E L+ + + ++ FT ++V ++ + + +
Sbjct: 177 SDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFE 236
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
E F Y + A V+ + G+ +G+GFV F D + +++ E+N + + + +G A
Sbjct: 237 ELF-GKYGKITSA-VLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRA 294
Query: 245 ATKKA---ATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K +QY+ A + QG N +FV LD S+ D+ LK F +G +
Sbjct: 295 QKKYERLQELKKQYEAARLEKLAKYQGVN------LFVKNLDDSIDDEKLKEEFAPFGTI 348
Query: 302 VHVKIPA-----GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQA 356
K+ + GFV F+ A +A++ N + G+ + ++ + +++ A
Sbjct: 349 TSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRNQLA 408
Query: 357 Q----WNGGGYYGFAQGYEAYGYAPPTQ--DPNMYYGGFPGYGTYQQP 398
Q N + A P Q P MYYGG P +Q P
Sbjct: 409 QQIQARNQMRFQHANAAAAAAVAGLPGQFMPPPMYYGGIPPRVPFQGP 456
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
+++VG+L V++ +L + F + SV +V D T S GY +V F D +++
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPI-GSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIE 97
Query: 228 EMNGVLCSTRPMRI-----GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGL 282
++N L +P RI P+ KK + I++ L
Sbjct: 98 QLNYTLIKGKPCRIMWSQRDPSLRKKGSG------------------------NIYIKNL 133
Query: 283 DPSVTDDILKTVFGQYGELVHVKIPAGKR-----CGFVQFANRTCAEQALSVLNGTQLGG 337
P++ + L F +G ++ K+ + GFV F N + A A+ ++G +
Sbjct: 134 HPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMND 193
Query: 338 QSIRLSWGRSPSNKQS 353
Q + ++ S ++QS
Sbjct: 194 QEVYVALHVSKKDRQS 209
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRC------GFVQFANRTCAEQALS 328
+++VG L+P+V++ +L +F G + +++ +V F + +A+
Sbjct: 38 ASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIE 97
Query: 329 VLNGTQLGGQSIRLSWG-RSPSNKQS 353
LN T + G+ R+ W R PS ++
Sbjct: 98 QLNYTLIKGKPCRIMWSQRDPSLRKK 123
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 132/281 (46%), Gaps = 28/281 (9%)
Query: 67 DASSDG--IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
+AS G + SL++GDL P + E+ + F G +S +V R+ T S GY +I F
Sbjct: 2 NASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQ 184
A AER L T N + Q R+ W+ G R+ G IF+ +L + + L
Sbjct: 62 PADAERALDTMNFEMLKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALY 116
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+TF + + ++ KV D S+G+GFV F +++ MNG+L + R + +G
Sbjct: 117 DTF-STFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHF 173
Query: 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV 304
+++ + G T I+V L V + L+ +F Q+G+++ V
Sbjct: 174 KSRR-------------EREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 305 KI----PAGKRC-GFVQFANRTCAEQALSVLNGTQLGGQSI 340
K+ RC GFV F A++A+ +NG ++ G+ +
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 142/301 (47%), Gaps = 28/301 (9%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L+ ++ + F G +S KV ++ S G+GF+ F +H
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETH 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQD-----DGPDFT-IFVGDLAADVT 179
AA++ + T NG + N R + + R ++ +FT I+V +L DV
Sbjct: 149 EAAQQAINTMNGMLL-----NDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239
+ LQ+ F + + + KV+ D +G S+ +GFV F E +++ MNG S R +
Sbjct: 204 EQGLQDLF-SQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Query: 240 RIGPA---ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFG 296
G A ++ +++++ + QG N ++V LD S+ DD L+ F
Sbjct: 262 YAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVN------LYVKNLDDSIDDDKLRKEFS 315
Query: 297 QYGELVHVKIPA----GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQ 352
YG + K+ K GFV F++ A +A++ +NG +G + + ++ + ++
Sbjct: 316 PYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Query: 353 S 353
+
Sbjct: 376 A 376
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 97/195 (49%), Gaps = 18/195 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ +L ++E + +F G+ +S KV+R+ + S +GF+ F H A++ +
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 135 FNGTQMP--------STEQNFRLNWATYGAGERRQDDGPDF---TIFVGDLAADVTDYVL 183
NG ++ + ++ R N + +QD + ++V +L + D L
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
++ F + Y + AKV+T+ G SKG+GFV F E +++TEMNG + T+P+ +
Sbjct: 311 RKEF-SPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 244 AATK---KAATGQQY 255
A K KA QY
Sbjct: 368 AQRKEERKAILTNQY 382
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 138/296 (46%), Gaps = 27/296 (9%)
Query: 65 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
AP A+ SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + +
Sbjct: 45 APAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNN 104
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQ 184
A ER L+ N T + + R+ W+ R+ G +F+ +L + + + L
Sbjct: 105 TADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALH 159
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G
Sbjct: 160 DTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHH 217
Query: 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV 304
+KK + Q E N T +++ LD + DD + +F ++GE+
Sbjct: 218 ISKK-------------DRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSA 264
Query: 305 KIP-----AGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQ 355
+ + GFV F+ A+ A+ +N ++ +S +L GR+ + ++
Sbjct: 265 TLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEI--RSQKLYVGRAQKKHEREE 318
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 113/245 (46%), Gaps = 13/245 (5%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G +S KV +++ N S+GYGF+ + +
Sbjct: 134 PALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETA 192
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA ++ NG + + + + + ++ +FT +++ +L +++ D +
Sbjct: 193 EAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFR 252
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+ F + + A + D+ G+S+G+GFV F ++ EMN ++ + +G A
Sbjct: 253 KMFEK-FGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRA 310
Query: 245 ATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K + +QY+ A + QG N ++V L + D+ L+ +FG YG +
Sbjct: 311 QKKHEREEELRKQYEAARLEKASKYQGVN------LYVKNLTDDIDDEKLRELFGPYGTI 364
Query: 302 VHVKI 306
K+
Sbjct: 365 TSAKV 369
Score = 38.5 bits (88), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
K AK + G+SKG+GFV F E +++TEMN + + +P+ + A K Q
Sbjct: 421 KEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQL 480
Query: 255 YQKATYQNT 263
+NT
Sbjct: 481 EASIQARNT 489
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,714,353
Number of Sequences: 539616
Number of extensions: 7802884
Number of successful extensions: 74621
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 698
Number of HSP's that attempted gapping in prelim test: 33757
Number of HSP's gapped (non-prelim): 22427
length of query: 406
length of database: 191,569,459
effective HSP length: 120
effective length of query: 286
effective length of database: 126,815,539
effective search space: 36269244154
effective search space used: 36269244154
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)