Query 015468
Match_columns 406
No_of_seqs 388 out of 3493
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:35:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 2.2E-48 4.7E-53 342.9 29.8 254 71-354 81-337 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 4.1E-47 8.9E-52 362.5 33.8 250 70-351 55-310 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.3E-47 9.3E-52 355.9 31.3 271 72-350 2-351 (352)
4 KOG0148 Apoptosis-promoting RN 100.0 2.8E-47 6E-52 315.1 23.1 242 69-353 2-243 (321)
5 TIGR01628 PABP-1234 polyadenyl 100.0 7E-43 1.5E-47 345.8 33.0 270 72-349 87-365 (562)
6 KOG0145 RNA-binding protein EL 100.0 6.5E-43 1.4E-47 287.4 26.1 273 69-349 37-359 (360)
7 TIGR01628 PABP-1234 polyadenyl 100.0 1.9E-42 4.1E-47 342.7 28.8 253 75-350 2-263 (562)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.9E-41 2.1E-45 322.1 31.2 265 72-349 1-352 (481)
9 TIGR01622 SF-CC1 splicing fact 100.0 8.9E-40 1.9E-44 316.7 30.4 276 70-347 86-447 (457)
10 TIGR01645 half-pint poly-U bin 100.0 2.9E-39 6.3E-44 308.9 29.7 174 72-246 106-283 (612)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.4E-39 1.2E-43 310.0 31.0 267 72-348 95-480 (481)
12 KOG0144 RNA-binding protein CU 100.0 2.5E-39 5.4E-44 284.4 23.0 280 65-350 26-506 (510)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.9E-38 4E-43 311.7 31.9 274 66-347 168-501 (509)
14 KOG0127 Nucleolar protein fibr 100.0 7.2E-37 1.6E-41 276.2 24.0 274 74-349 6-379 (678)
15 TIGR01659 sex-lethal sex-letha 100.0 7.4E-36 1.6E-40 272.3 27.0 170 161-352 102-279 (346)
16 TIGR01659 sex-lethal sex-letha 100.0 5.1E-33 1.1E-37 253.7 21.4 172 69-248 103-276 (346)
17 KOG0123 Polyadenylate-binding 100.0 2.1E-32 4.5E-37 250.7 22.0 241 74-349 2-247 (369)
18 KOG0123 Polyadenylate-binding 100.0 6.6E-32 1.4E-36 247.5 18.3 265 76-348 79-349 (369)
19 TIGR01648 hnRNP-R-Q heterogene 100.0 7.8E-31 1.7E-35 251.0 24.6 221 71-300 136-367 (578)
20 TIGR01645 half-pint poly-U bin 100.0 2.9E-30 6.4E-35 247.2 20.4 175 166-351 107-287 (612)
21 KOG0124 Polypyrimidine tract-b 100.0 1.6E-30 3.4E-35 224.3 15.7 271 74-345 114-532 (544)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.4E-29 3E-34 237.5 21.6 176 72-248 88-350 (352)
23 KOG0148 Apoptosis-promoting RN 100.0 7.6E-30 1.7E-34 211.8 16.7 166 73-247 62-238 (321)
24 KOG0147 Transcriptional coacti 100.0 2.5E-30 5.5E-35 235.3 13.3 278 68-347 174-527 (549)
25 KOG0144 RNA-binding protein CU 100.0 2.4E-29 5.1E-34 221.7 16.3 172 163-355 31-213 (510)
26 KOG0110 RNA-binding protein (R 100.0 4.3E-28 9.4E-33 226.6 18.9 259 70-349 382-694 (725)
27 KOG0127 Nucleolar protein fibr 100.0 2.6E-28 5.7E-33 221.0 16.5 254 73-330 117-516 (678)
28 TIGR01622 SF-CC1 splicing fact 100.0 4E-27 8.6E-32 228.3 20.8 175 163-348 86-266 (457)
29 KOG4211 Splicing factor hnRNP- 100.0 1.2E-25 2.5E-30 202.4 27.2 269 70-348 7-358 (510)
30 KOG0145 RNA-binding protein EL 99.9 6.8E-27 1.5E-31 193.1 12.9 167 163-351 38-212 (360)
31 KOG0131 Splicing factor 3b, su 99.9 1.8E-26 4E-31 180.8 11.4 174 70-250 6-180 (203)
32 KOG0117 Heterogeneous nuclear 99.9 5.4E-26 1.2E-30 201.6 14.7 173 71-252 162-336 (506)
33 KOG4212 RNA-binding protein hn 99.9 5E-24 1.1E-28 188.3 23.7 164 70-236 41-283 (608)
34 KOG0131 Splicing factor 3b, su 99.9 3.8E-25 8.2E-30 173.5 11.7 165 166-351 9-180 (203)
35 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.7E-24 1E-28 209.8 21.9 177 70-247 292-502 (509)
36 KOG0109 RNA-binding protein LA 99.9 5E-25 1.1E-29 185.1 10.7 153 168-354 4-156 (346)
37 KOG0109 RNA-binding protein LA 99.9 2.7E-24 5.8E-29 180.7 8.8 149 75-249 4-152 (346)
38 KOG4205 RNA-binding protein mu 99.9 3.5E-23 7.5E-28 183.1 15.7 176 72-252 5-181 (311)
39 KOG4205 RNA-binding protein mu 99.9 2.2E-23 4.7E-28 184.4 14.1 171 165-353 5-181 (311)
40 KOG0124 Polypyrimidine tract-b 99.9 8.4E-24 1.8E-28 182.9 9.4 171 168-349 115-291 (544)
41 KOG0146 RNA-binding protein ET 99.9 2.3E-22 5E-27 167.0 12.4 178 70-249 16-367 (371)
42 KOG1190 Polypyrimidine tract-b 99.9 3.6E-21 7.8E-26 169.1 18.9 269 70-349 25-374 (492)
43 KOG0120 Splicing factor U2AF, 99.9 3.1E-21 6.8E-26 178.8 17.9 274 66-347 168-491 (500)
44 KOG1190 Polypyrimidine tract-b 99.9 3.4E-20 7.4E-25 163.0 23.4 269 69-347 146-490 (492)
45 KOG0146 RNA-binding protein ET 99.9 4.6E-22 9.9E-27 165.2 11.0 185 164-350 17-367 (371)
46 KOG0110 RNA-binding protein (R 99.9 1.1E-21 2.4E-26 184.0 11.8 174 75-249 517-695 (725)
47 PLN03134 glycine-rich RNA-bind 99.8 2.7E-19 5.9E-24 143.1 14.8 80 271-350 31-116 (144)
48 KOG1456 Heterogeneous nuclear 99.8 4.6E-18 1E-22 147.9 23.3 270 69-350 27-365 (494)
49 KOG0147 Transcriptional coacti 99.8 3.4E-20 7.4E-25 169.6 8.1 176 165-349 178-359 (549)
50 KOG0105 Alternative splicing f 99.8 8.2E-19 1.8E-23 138.1 13.5 154 70-234 3-175 (241)
51 KOG0105 Alternative splicing f 99.8 4.3E-18 9.2E-23 134.1 17.4 168 165-337 5-177 (241)
52 KOG4206 Spliceosomal protein s 99.8 1.1E-17 2.4E-22 137.3 16.4 178 165-346 8-220 (221)
53 KOG1456 Heterogeneous nuclear 99.8 2.7E-16 5.9E-21 137.0 24.6 266 72-348 119-491 (494)
54 KOG4206 Spliceosomal protein s 99.8 2.5E-17 5.4E-22 135.2 16.5 165 72-245 8-220 (221)
55 KOG1457 RNA binding protein (c 99.8 2.2E-17 4.7E-22 134.1 15.9 163 68-235 29-274 (284)
56 KOG1365 RNA-binding protein Fu 99.8 1.5E-17 3.2E-22 145.3 13.3 273 70-347 57-361 (508)
57 KOG4211 Splicing factor hnRNP- 99.7 1.9E-16 4.1E-21 143.3 20.0 165 166-346 10-180 (510)
58 PLN03134 glycine-rich RNA-bind 99.7 6.8E-17 1.5E-21 129.3 11.6 85 68-154 29-113 (144)
59 KOG1457 RNA binding protein (c 99.7 1.9E-16 4.1E-21 128.7 13.0 171 164-335 32-273 (284)
60 KOG4212 RNA-binding protein hn 99.7 1.7E-15 3.7E-20 134.7 19.0 182 167-349 45-295 (608)
61 KOG1548 Transcription elongati 99.7 1.5E-15 3.3E-20 131.4 16.2 171 70-248 131-353 (382)
62 KOG0107 Alternative splicing f 99.7 2.3E-16 4.9E-21 123.6 9.9 78 273-350 9-87 (195)
63 KOG0106 Alternative splicing f 99.7 9.5E-17 2.1E-21 133.4 8.1 166 168-345 3-168 (216)
64 KOG0106 Alternative splicing f 99.7 1.1E-16 2.3E-21 133.1 6.6 152 74-244 2-168 (216)
65 KOG1548 Transcription elongati 99.6 2E-14 4.3E-19 124.6 15.9 183 164-348 132-352 (382)
66 KOG0122 Translation initiation 99.6 5.7E-15 1.2E-19 122.0 11.3 85 69-155 185-269 (270)
67 KOG0125 Ataxin 2-binding prote 99.6 2.3E-15 4.9E-20 129.4 7.9 79 271-349 93-175 (376)
68 KOG0149 Predicted RNA-binding 99.6 4.8E-15 1E-19 122.1 7.9 82 70-152 9-90 (247)
69 PF00076 RRM_1: RNA recognitio 99.6 5.7E-15 1.2E-19 103.9 6.9 67 76-143 1-67 (70)
70 KOG0125 Ataxin 2-binding prote 99.6 2.5E-14 5.4E-19 123.1 11.5 93 65-161 88-180 (376)
71 KOG4207 Predicted splicing fac 99.6 1.8E-14 4E-19 115.8 9.8 77 274-350 13-95 (256)
72 KOG0121 Nuclear cap-binding pr 99.6 9.1E-15 2E-19 108.4 6.8 81 70-150 33-113 (153)
73 KOG0122 Translation initiation 99.6 1.4E-14 3.1E-19 119.7 8.4 82 165-247 188-269 (270)
74 PF00076 RRM_1: RNA recognitio 99.5 3.3E-14 7.3E-19 100.0 8.6 70 169-240 1-70 (70)
75 KOG0149 Predicted RNA-binding 99.5 1.6E-14 3.4E-19 119.1 7.6 80 165-246 11-90 (247)
76 PLN03120 nucleic acid binding 99.5 3.4E-14 7.3E-19 121.5 9.6 74 274-348 4-80 (260)
77 KOG0107 Alternative splicing f 99.5 1.8E-14 4E-19 113.0 6.9 78 71-153 8-85 (195)
78 COG0724 RNA-binding proteins ( 99.5 1.6E-13 3.5E-18 124.8 13.3 130 73-203 115-261 (306)
79 KOG0121 Nuclear cap-binding pr 99.5 5.2E-14 1.1E-18 104.4 7.4 81 165-246 35-115 (153)
80 COG0724 RNA-binding proteins ( 99.5 5.6E-13 1.2E-17 121.2 15.8 143 166-309 115-260 (306)
81 PF14259 RRM_6: RNA recognitio 99.5 5E-14 1.1E-18 99.0 6.7 67 76-143 1-67 (70)
82 PLN03120 nucleic acid binding 99.5 2.3E-13 5E-18 116.4 10.4 74 73-150 4-77 (260)
83 KOG0114 Predicted RNA-binding 99.5 2.3E-13 5E-18 97.0 8.2 76 273-348 17-95 (124)
84 KOG0120 Splicing factor U2AF, 99.5 2.9E-13 6.2E-18 126.3 11.0 180 68-248 284-493 (500)
85 PLN03213 repressor of silencin 99.5 1.8E-13 3.9E-18 123.9 9.1 76 272-347 8-87 (759)
86 KOG0114 Predicted RNA-binding 99.5 4.1E-13 8.9E-18 95.8 8.8 74 68-144 13-86 (124)
87 PF14259 RRM_6: RNA recognitio 99.4 4E-13 8.6E-18 94.4 8.1 70 169-240 1-70 (70)
88 KOG0113 U1 small nuclear ribon 99.4 3.5E-13 7.5E-18 114.7 9.0 86 68-153 96-181 (335)
89 KOG0129 Predicted RNA-binding 99.4 4.3E-12 9.3E-17 116.3 16.0 159 70-228 256-432 (520)
90 KOG4207 Predicted splicing fac 99.4 1.8E-13 4E-18 110.1 6.1 81 70-150 10-90 (256)
91 PLN03121 nucleic acid binding 99.4 6.9E-13 1.5E-17 111.5 9.5 74 273-347 4-80 (243)
92 KOG0111 Cyclophilin-type pepti 99.4 1.3E-13 2.9E-18 111.9 4.7 80 273-352 9-94 (298)
93 KOG0126 Predicted RNA-binding 99.4 1.1E-14 2.4E-19 114.7 -1.6 77 72-148 34-110 (219)
94 KOG0113 U1 small nuclear ribon 99.4 9.7E-13 2.1E-17 112.0 9.6 86 161-247 96-181 (335)
95 PLN03121 nucleic acid binding 99.4 8.2E-13 1.8E-17 111.1 8.9 72 72-147 4-75 (243)
96 PF13893 RRM_5: RNA recognitio 99.4 1.5E-12 3.2E-17 86.8 8.1 55 291-345 1-56 (56)
97 KOG4307 RNA binding protein RB 99.4 6.4E-12 1.4E-16 118.3 14.9 173 68-246 306-513 (944)
98 KOG0108 mRNA cleavage and poly 99.4 4.4E-13 9.6E-18 124.4 6.6 84 167-251 19-102 (435)
99 KOG0126 Predicted RNA-binding 99.4 4.1E-14 8.9E-19 111.5 -0.3 84 165-249 34-117 (219)
100 KOG0111 Cyclophilin-type pepti 99.4 2.9E-13 6.3E-18 110.0 3.9 86 165-251 9-94 (298)
101 smart00362 RRM_2 RNA recogniti 99.4 2.8E-12 6E-17 90.3 8.6 68 276-343 1-72 (72)
102 smart00362 RRM_2 RNA recogniti 99.4 3E-12 6.4E-17 90.2 7.7 67 75-143 1-67 (72)
103 KOG1365 RNA-binding protein Fu 99.4 2.1E-11 4.5E-16 107.3 14.3 172 73-250 161-365 (508)
104 PLN03213 repressor of silencin 99.3 4.5E-12 9.8E-17 114.9 9.9 81 164-249 8-90 (759)
105 KOG0128 RNA-binding protein SA 99.3 2E-13 4.4E-18 131.5 0.9 241 72-352 570-819 (881)
106 KOG0130 RNA-binding protein RB 99.3 2.4E-12 5.3E-17 96.4 6.2 88 161-249 67-154 (170)
107 smart00360 RRM RNA recognition 99.3 6.1E-12 1.3E-16 88.2 7.6 66 78-143 1-66 (71)
108 KOG0129 Predicted RNA-binding 99.3 4.1E-11 8.9E-16 109.9 14.6 162 165-329 258-432 (520)
109 KOG0116 RasGAP SH3 binding pro 99.3 1.2E-11 2.6E-16 114.2 11.0 78 273-351 287-370 (419)
110 KOG4660 Protein Mei2, essentia 99.3 2.1E-11 4.6E-16 112.7 12.3 156 68-238 70-241 (549)
111 KOG0130 RNA-binding protein RB 99.3 5.1E-12 1.1E-16 94.7 6.6 79 73-153 72-150 (170)
112 KOG4454 RNA binding protein (R 99.3 1.1E-12 2.3E-17 106.8 2.2 142 70-235 6-151 (267)
113 smart00360 RRM RNA recognition 99.3 2E-11 4.4E-16 85.5 8.6 71 171-242 1-71 (71)
114 cd00590 RRM RRM (RNA recogniti 99.3 4.1E-11 8.8E-16 84.7 8.8 69 276-344 1-74 (74)
115 KOG0153 Predicted RNA-binding 99.2 4.7E-11 1E-15 104.1 9.3 84 266-349 220-304 (377)
116 KOG0108 mRNA cleavage and poly 99.2 2.8E-11 6E-16 112.6 7.9 78 74-153 19-96 (435)
117 smart00361 RRM_1 RNA recogniti 99.2 6.6E-11 1.4E-15 82.6 7.9 62 180-242 2-70 (70)
118 cd00590 RRM RRM (RNA recogniti 99.2 1.8E-10 3.8E-15 81.4 9.4 74 168-243 1-74 (74)
119 KOG0132 RNA polymerase II C-te 99.2 8.3E-11 1.8E-15 112.5 9.1 83 270-352 417-499 (894)
120 KOG4210 Nuclear localization s 99.2 6.8E-11 1.5E-15 105.1 6.9 178 71-250 86-267 (285)
121 KOG4210 Nuclear localization s 99.1 9.7E-11 2.1E-15 104.2 7.8 175 165-351 87-267 (285)
122 KOG4307 RNA binding protein RB 99.1 9.2E-10 2E-14 104.1 13.9 174 167-343 312-509 (944)
123 smart00361 RRM_1 RNA recogniti 99.1 1.3E-10 2.8E-15 81.2 6.4 59 87-145 2-67 (70)
124 KOG0128 RNA-binding protein SA 99.1 1.6E-11 3.4E-16 118.7 2.2 150 71-246 665-814 (881)
125 KOG0226 RNA-binding proteins [ 99.1 4E-10 8.6E-15 94.2 8.7 171 74-248 97-271 (290)
126 PF13893 RRM_5: RNA recognitio 99.1 2.2E-10 4.8E-15 76.2 5.9 56 183-244 1-56 (56)
127 KOG0132 RNA polymerase II C-te 99.1 2.3E-10 4.9E-15 109.6 7.1 108 73-188 421-528 (894)
128 KOG0112 Large RNA-binding prot 99.0 2.4E-10 5.3E-15 111.1 6.1 166 161-351 367-534 (975)
129 KOG4208 Nucleolar RNA-binding 99.0 1.5E-09 3.3E-14 88.2 7.4 79 70-148 46-125 (214)
130 KOG0415 Predicted peptidyl pro 99.0 9.9E-10 2.2E-14 95.9 5.9 80 70-149 236-315 (479)
131 KOG4660 Protein Mei2, essentia 98.9 1.4E-09 3.1E-14 100.9 6.9 178 161-347 70-249 (549)
132 KOG4661 Hsp27-ERE-TATA-binding 98.9 3.1E-09 6.7E-14 98.4 7.7 79 271-349 402-486 (940)
133 KOG0415 Predicted peptidyl pro 98.9 2.1E-09 4.6E-14 93.9 6.3 86 163-249 236-321 (479)
134 KOG4208 Nucleolar RNA-binding 98.9 4.9E-09 1.1E-13 85.3 7.7 86 162-247 45-130 (214)
135 KOG0112 Large RNA-binding prot 98.9 1.3E-09 2.8E-14 106.2 4.9 166 68-250 367-534 (975)
136 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.3E-08 2.8E-13 94.4 8.7 77 71-147 403-479 (940)
137 KOG4454 RNA binding protein (R 98.8 1.6E-09 3.4E-14 88.6 2.1 138 165-335 8-150 (267)
138 KOG0153 Predicted RNA-binding 98.8 1.2E-08 2.7E-13 89.2 7.4 83 158-247 220-303 (377)
139 KOG0226 RNA-binding proteins [ 98.8 5.5E-09 1.2E-13 87.4 4.9 145 184-345 117-267 (290)
140 PF04059 RRM_2: RNA recognitio 98.7 1E-07 2.2E-12 69.7 8.8 80 74-153 2-85 (97)
141 KOG0116 RasGAP SH3 binding pro 98.7 8.2E-08 1.8E-12 89.2 9.1 64 72-135 287-350 (419)
142 KOG0151 Predicted splicing reg 98.6 6.9E-08 1.5E-12 92.0 7.5 85 265-349 165-258 (877)
143 KOG4676 Splicing factor, argin 98.6 2.5E-08 5.4E-13 88.5 3.6 209 73-342 7-220 (479)
144 KOG0533 RRM motif-containing p 98.6 2.4E-07 5.2E-12 79.5 8.0 79 70-149 80-158 (243)
145 KOG0533 RRM motif-containing p 98.5 3.3E-07 7.1E-12 78.7 8.4 85 164-250 81-165 (243)
146 PF08777 RRM_3: RNA binding mo 98.5 2.4E-07 5.2E-12 69.6 6.5 70 275-344 2-76 (105)
147 KOG2193 IGF-II mRNA-binding pr 98.5 2.8E-08 6.1E-13 89.0 1.6 153 168-350 3-159 (584)
148 KOG4209 Splicing factor RNPS1, 98.4 4.1E-07 8.9E-12 78.4 5.9 80 70-150 98-177 (231)
149 PF11608 Limkain-b1: Limkain b 98.4 1.2E-06 2.5E-11 60.8 6.7 71 275-349 3-78 (90)
150 KOG0151 Predicted splicing reg 98.4 1.5E-06 3.3E-11 83.1 9.1 85 67-153 168-255 (877)
151 PF04059 RRM_2: RNA recognitio 98.4 3.9E-06 8.5E-11 61.4 9.3 79 167-245 2-85 (97)
152 KOG4209 Splicing factor RNPS1, 98.3 8.1E-07 1.8E-11 76.6 5.4 85 161-247 96-180 (231)
153 KOG1995 Conserved Zn-finger pr 98.2 7.6E-06 1.6E-10 72.7 9.0 85 271-355 63-161 (351)
154 PF11608 Limkain-b1: Limkain b 98.1 1.7E-05 3.7E-10 55.1 7.1 71 168-248 4-78 (90)
155 KOG2193 IGF-II mRNA-binding pr 98.1 5E-07 1.1E-11 81.2 -0.9 154 74-246 2-156 (584)
156 PF14605 Nup35_RRM_2: Nup53/35 98.0 1.4E-05 3E-10 51.8 5.0 52 275-327 2-53 (53)
157 KOG1995 Conserved Zn-finger pr 98.0 1.5E-05 3.3E-10 70.8 6.7 76 68-143 61-144 (351)
158 PF05172 Nup35_RRM: Nup53/35/4 97.9 6.8E-05 1.5E-09 55.4 7.2 70 275-346 7-90 (100)
159 PF08777 RRM_3: RNA binding mo 97.8 4.6E-05 1E-09 57.3 6.0 59 74-138 2-60 (105)
160 PF14605 Nup35_RRM_2: Nup53/35 97.8 5E-05 1.1E-09 49.2 5.0 53 73-132 1-53 (53)
161 KOG1855 Predicted RNA-binding 97.8 5.5E-05 1.2E-09 68.6 6.6 74 269-342 226-318 (484)
162 KOG4849 mRNA cleavage factor I 97.8 4E-05 8.8E-10 67.5 5.5 79 69-147 76-156 (498)
163 KOG0115 RNA-binding protein p5 97.7 0.00012 2.6E-09 62.1 6.6 91 125-231 4-94 (275)
164 COG5175 MOT2 Transcriptional r 97.6 0.00012 2.5E-09 64.3 6.1 74 275-348 115-203 (480)
165 KOG0115 RNA-binding protein p5 97.6 0.0005 1.1E-08 58.4 9.1 99 220-346 5-112 (275)
166 KOG1855 Predicted RNA-binding 97.5 8.6E-05 1.9E-09 67.4 4.3 68 70-137 228-308 (484)
167 COG5175 MOT2 Transcriptional r 97.5 0.00049 1.1E-08 60.5 8.1 80 168-248 116-204 (480)
168 KOG4849 mRNA cleavage factor I 97.5 0.00014 3.1E-09 64.1 4.5 77 165-242 79-157 (498)
169 KOG1996 mRNA splicing factor [ 97.4 0.00026 5.7E-09 61.1 5.6 60 287-346 299-365 (378)
170 KOG3152 TBP-binding protein, a 97.4 0.00013 2.9E-09 61.8 3.5 71 74-144 75-157 (278)
171 PF08952 DUF1866: Domain of un 97.4 0.00099 2.1E-08 52.3 8.0 75 271-348 24-107 (146)
172 KOG2314 Translation initiation 97.4 0.00061 1.3E-08 64.1 7.6 78 70-149 55-138 (698)
173 KOG3152 TBP-binding protein, a 97.2 0.00015 3.2E-09 61.5 2.0 65 275-339 75-157 (278)
174 KOG2202 U2 snRNP splicing fact 97.1 0.00019 4.1E-09 61.0 1.6 58 289-346 83-146 (260)
175 KOG2416 Acinus (induces apopto 97.1 0.00053 1.2E-08 64.9 3.9 83 267-349 437-523 (718)
176 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0017 3.6E-08 48.1 5.5 70 71-142 4-80 (100)
177 PF10309 DUF2414: Protein of u 97.0 0.0027 5.9E-08 42.1 5.7 54 275-330 6-62 (62)
178 PF07576 BRAP2: BRCA1-associat 97.0 0.011 2.4E-07 44.7 9.6 71 70-142 10-81 (110)
179 KOG2202 U2 snRNP splicing fact 97.0 0.00049 1.1E-08 58.6 2.4 65 181-246 83-147 (260)
180 PF08675 RNA_bind: RNA binding 96.9 0.0067 1.5E-07 42.4 7.1 58 71-137 7-64 (87)
181 KOG2591 c-Mpl binding protein, 96.9 0.0036 7.7E-08 59.1 7.4 66 275-341 176-245 (684)
182 KOG2314 Translation initiation 96.8 0.0027 5.9E-08 60.0 6.0 74 167-242 59-139 (698)
183 KOG1996 mRNA splicing factor [ 96.8 0.0038 8.3E-08 54.1 6.2 68 180-248 300-368 (378)
184 KOG2416 Acinus (induces apopto 96.6 0.0018 3.8E-08 61.6 3.7 80 67-152 438-519 (718)
185 PF10309 DUF2414: Protein of u 96.6 0.015 3.3E-07 38.6 6.8 53 74-135 6-62 (62)
186 PF15023 DUF4523: Protein of u 96.5 0.014 3E-07 45.3 7.0 75 271-347 83-161 (166)
187 KOG4676 Splicing factor, argin 96.5 0.0038 8.3E-08 56.3 4.6 71 275-346 8-87 (479)
188 KOG2253 U1 snRNP complex, subu 96.4 0.0028 6E-08 61.2 3.5 69 73-150 40-108 (668)
189 PF08675 RNA_bind: RNA binding 96.3 0.023 5.1E-07 39.8 6.8 55 275-332 10-64 (87)
190 PF04847 Calcipressin: Calcipr 96.1 0.016 3.5E-07 48.2 6.2 62 287-348 8-71 (184)
191 KOG0804 Cytoplasmic Zn-finger 96.1 0.04 8.8E-07 51.0 9.1 69 72-142 73-142 (493)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 95.8 0.0083 1.8E-07 49.8 3.1 72 71-142 5-82 (176)
193 PF08952 DUF1866: Domain of un 95.7 0.031 6.7E-07 44.0 5.7 55 182-246 52-106 (146)
194 KOG2135 Proteins containing th 95.5 0.0077 1.7E-07 55.9 2.1 73 275-348 373-446 (526)
195 PRK11634 ATP-dependent RNA hel 95.5 0.093 2E-06 53.0 9.8 70 276-348 488-563 (629)
196 PF07576 BRAP2: BRCA1-associat 95.5 0.2 4.2E-06 37.9 9.1 67 167-235 14-80 (110)
197 KOG4285 Mitotic phosphoprotein 95.4 0.064 1.4E-06 47.0 7.1 73 274-348 197-270 (350)
198 KOG0921 Dosage compensation co 95.3 0.027 5.8E-07 56.8 5.3 13 206-218 899-911 (1282)
199 PF03880 DbpA: DbpA RNA bindin 95.3 0.11 2.3E-06 36.3 6.8 66 277-345 3-74 (74)
200 KOG4574 RNA-binding protein (c 95.3 0.01 2.2E-07 59.0 2.1 76 277-352 301-378 (1007)
201 KOG2068 MOT2 transcription fac 94.9 0.012 2.5E-07 52.6 1.4 74 275-348 78-163 (327)
202 PF10567 Nab6_mRNP_bdg: RNA-re 94.9 0.84 1.8E-05 40.2 12.6 170 162-333 11-214 (309)
203 KOG3973 Uncharacterized conser 94.7 0.064 1.4E-06 47.9 5.2 22 168-189 151-172 (465)
204 PF15023 DUF4523: Protein of u 94.5 0.12 2.7E-06 40.1 5.8 75 163-246 83-161 (166)
205 PF03467 Smg4_UPF3: Smg-4/UPF3 94.5 0.14 3E-06 42.6 6.6 74 274-347 7-97 (176)
206 KOG0804 Cytoplasmic Zn-finger 94.4 0.29 6.2E-06 45.6 9.0 69 166-236 74-142 (493)
207 KOG2591 c-Mpl binding protein, 94.3 0.11 2.3E-06 49.5 6.2 58 71-135 173-232 (684)
208 KOG3973 Uncharacterized conser 94.2 0.086 1.9E-06 47.1 4.9 15 389-403 378-392 (465)
209 PF11767 SET_assoc: Histone ly 93.8 0.29 6.4E-06 33.1 5.9 55 285-342 11-65 (66)
210 KOG4574 RNA-binding protein (c 93.5 0.046 1E-06 54.5 2.2 74 75-154 300-373 (1007)
211 KOG2318 Uncharacterized conser 93.4 0.61 1.3E-05 44.9 9.4 84 69-152 170-305 (650)
212 KOG1546 Metacaspase involved i 93.4 4.2 9.1E-05 36.7 13.9 120 74-202 64-202 (362)
213 KOG4285 Mitotic phosphoprotein 93.3 0.35 7.7E-06 42.6 7.0 62 73-142 197-258 (350)
214 PF10567 Nab6_mRNP_bdg: RNA-re 93.2 3.6 7.9E-05 36.4 13.0 161 69-231 11-213 (309)
215 PF07292 NID: Nmi/IFP 35 domai 93.0 0.16 3.4E-06 36.6 3.7 71 212-296 1-74 (88)
216 KOG2068 MOT2 transcription fac 92.5 0.06 1.3E-06 48.2 1.4 81 168-249 79-165 (327)
217 PF07292 NID: Nmi/IFP 35 domai 92.1 0.11 2.4E-06 37.3 2.1 70 118-188 1-74 (88)
218 PF04847 Calcipressin: Calcipr 92.1 0.38 8.2E-06 40.2 5.5 63 179-248 8-72 (184)
219 KOG2891 Surface glycoprotein [ 90.2 0.18 3.9E-06 43.7 1.9 74 275-348 150-268 (445)
220 KOG2318 Uncharacterized conser 89.9 1.4 3E-05 42.6 7.6 73 271-343 171-301 (650)
221 KOG2253 U1 snRNP complex, subu 89.8 0.27 6E-06 48.0 3.0 73 269-344 35-107 (668)
222 KOG1883 Cofactor required for 89.5 0.2 4.4E-06 51.8 2.0 9 1-9 1417-1425(1517)
223 KOG4019 Calcineurin-mediated s 87.8 0.56 1.2E-05 38.2 3.0 74 275-348 11-90 (193)
224 KOG4410 5-formyltetrahydrofola 87.1 2.9 6.4E-05 36.6 7.1 50 272-321 328-378 (396)
225 KOG2135 Proteins containing th 86.7 0.34 7.4E-06 45.4 1.4 67 174-248 380-447 (526)
226 PF11767 SET_assoc: Histone ly 85.8 4.8 0.0001 27.2 6.3 56 176-241 10-65 (66)
227 PF14111 DUF4283: Domain of un 85.0 1.2 2.6E-05 35.9 3.8 111 177-308 28-139 (153)
228 PF03880 DbpA: DbpA RNA bindin 84.3 4.5 9.7E-05 28.1 5.9 59 176-244 11-74 (74)
229 KOG2295 C2H2 Zn-finger protein 83.8 0.33 7.2E-06 46.4 -0.0 73 73-145 231-303 (648)
230 PRK10927 essential cell divisi 77.7 16 0.00034 33.0 8.3 66 72-142 246-311 (319)
231 KOG4410 5-formyltetrahydrofola 76.9 5.2 0.00011 35.2 4.9 51 72-127 329-379 (396)
232 PF00403 HMA: Heavy-metal-asso 72.2 25 0.00053 23.0 6.5 54 276-329 1-58 (62)
233 KOG3424 40S ribosomal protein 71.8 11 0.00023 28.5 4.8 48 176-224 33-84 (132)
234 TIGR02542 B_forsyth_147 Bacter 67.0 26 0.00056 26.4 5.9 118 80-219 10-129 (145)
235 PRK01178 rps24e 30S ribosomal 64.2 28 0.0006 25.8 5.7 49 176-225 29-81 (99)
236 COG5638 Uncharacterized conser 61.8 32 0.0007 32.1 6.8 72 267-338 139-286 (622)
237 PF14111 DUF4283: Domain of un 61.7 23 0.00051 28.3 5.6 108 85-201 29-139 (153)
238 PRK14548 50S ribosomal protein 61.6 34 0.00075 24.4 5.6 57 76-135 23-81 (84)
239 COG4907 Predicted membrane pro 61.5 8.2 0.00018 36.5 3.1 15 320-334 525-539 (595)
240 KOG4483 Uncharacterized conser 61.3 25 0.00055 32.7 6.0 58 70-133 388-445 (528)
241 PF15513 DUF4651: Domain of un 61.0 20 0.00043 23.8 3.9 18 88-105 9-26 (62)
242 KOG4592 Uncharacterized conser 60.9 12 0.00025 36.9 4.1 9 220-228 430-438 (728)
243 PRK14548 50S ribosomal protein 59.8 23 0.0005 25.3 4.5 54 277-330 23-81 (84)
244 PF05918 API5: Apoptosis inhib 59.3 3.1 6.7E-05 41.0 0.0 15 215-229 329-343 (556)
245 TIGR03636 L23_arch archaeal ri 58.7 26 0.00056 24.6 4.5 53 277-329 16-73 (77)
246 PF03468 XS: XS domain; Inter 57.3 16 0.00034 28.0 3.6 49 75-126 10-67 (116)
247 TIGR03636 L23_arch archaeal ri 57.2 49 0.0011 23.2 5.7 57 75-134 15-73 (77)
248 PRK10590 ATP-dependent RNA hel 56.0 1.8E+02 0.0039 28.3 11.7 10 120-129 128-137 (456)
249 PF05918 API5: Apoptosis inhib 55.7 3.8 8.3E-05 40.4 0.0 6 85-90 190-195 (556)
250 KOG1151 Tousled-like protein k 55.2 7.7 0.00017 36.8 1.8 14 277-290 493-506 (775)
251 KOG4483 Uncharacterized conser 54.3 19 0.00041 33.4 4.1 56 273-329 390-446 (528)
252 COG5638 Uncharacterized conser 54.2 38 0.00082 31.6 6.0 83 69-151 142-294 (622)
253 PTZ00071 40S ribosomal protein 53.3 46 0.001 26.0 5.5 49 176-225 34-87 (132)
254 COG4907 Predicted membrane pro 51.4 21 0.00045 34.0 3.9 12 322-333 524-535 (595)
255 COG2608 CopZ Copper chaperone 51.4 45 0.00097 22.8 4.8 45 275-319 4-48 (71)
256 PRK11901 hypothetical protein; 49.7 1.9E+02 0.0042 26.5 9.6 60 73-137 245-306 (327)
257 KOG2891 Surface glycoprotein [ 47.9 16 0.00035 32.0 2.6 70 71-140 147-247 (445)
258 KOG4213 RNA-binding protein La 47.2 30 0.00065 28.4 3.8 57 73-134 111-169 (205)
259 KOG1295 Nonsense-mediated deca 46.9 19 0.0004 33.4 2.9 70 72-141 6-78 (376)
260 KOG2295 C2H2 Zn-finger protein 45.5 5.2 0.00011 38.7 -0.8 64 273-336 230-299 (648)
261 COG2004 RPS24A Ribosomal prote 45.0 93 0.002 23.3 5.8 48 176-224 30-81 (107)
262 PF01282 Ribosomal_S24e: Ribos 44.5 98 0.0021 22.1 5.8 49 176-225 11-63 (84)
263 PRK10263 DNA translocase FtsK; 43.7 20 0.00043 39.2 3.0 10 90-99 894-903 (1355)
264 PF11061 DUF2862: Protein of u 43.6 89 0.0019 21.0 4.9 40 280-320 10-52 (64)
265 PF13388 DUF4106: Protein of u 43.5 19 0.00041 31.9 2.3 14 86-99 264-277 (422)
266 KOG4008 rRNA processing protei 41.8 23 0.00049 30.5 2.4 33 68-100 35-67 (261)
267 PRK10263 DNA translocase FtsK; 41.2 24 0.00053 38.6 3.1 13 217-229 1070-1082(1355)
268 PF02714 DUF221: Domain of unk 40.1 34 0.00074 31.5 3.7 35 313-349 1-35 (325)
269 PF03468 XS: XS domain; Inter 39.1 74 0.0016 24.4 4.7 40 178-221 29-68 (116)
270 PF03439 Spt5-NGN: Early trans 38.9 53 0.0012 23.4 3.7 33 100-137 34-66 (84)
271 COG5193 LHP1 La protein, small 38.3 15 0.00033 34.1 1.0 61 73-133 174-244 (438)
272 COG1512 Beta-propeller domains 38.2 61 0.0013 29.0 4.7 21 169-189 114-135 (271)
273 KOG4368 Predicted RNA binding 36.8 30 0.00065 33.9 2.7 10 180-189 553-562 (757)
274 PF08544 GHMP_kinases_C: GHMP 36.2 1.2E+02 0.0025 21.1 5.3 42 289-331 37-80 (85)
275 PF12829 Mhr1: Transcriptional 36.1 82 0.0018 22.9 4.2 53 80-136 19-72 (91)
276 PRK10905 cell division protein 36.0 65 0.0014 29.3 4.5 59 75-137 249-308 (328)
277 COG3254 Uncharacterized conser 35.1 1.4E+02 0.003 22.3 5.3 43 88-133 27-69 (105)
278 PF07223 DUF1421: Protein of u 34.8 71 0.0015 29.9 4.7 8 181-188 322-329 (358)
279 PF07530 PRE_C2HC: Associated 34.5 77 0.0017 21.6 3.8 64 181-247 2-65 (68)
280 PF02714 DUF221: Domain of unk 33.4 86 0.0019 28.8 5.3 56 118-188 1-56 (325)
281 PF03439 Spt5-NGN: Early trans 31.3 94 0.002 22.1 4.0 35 300-334 33-68 (84)
282 KOG1151 Tousled-like protein k 30.1 27 0.00059 33.3 1.3 8 172-179 394-401 (775)
283 PF11823 DUF3343: Protein of u 28.4 77 0.0017 21.7 3.1 26 311-336 2-27 (73)
284 KOG4365 Uncharacterized conser 28.1 10 0.00023 35.6 -1.7 73 275-348 4-82 (572)
285 KOG4019 Calcineurin-mediated s 28.1 47 0.001 27.5 2.1 42 208-249 50-92 (193)
286 PF00403 HMA: Heavy-metal-asso 27.7 1.7E+02 0.0038 18.8 6.5 54 75-134 1-58 (62)
287 PF14893 PNMA: PNMA 26.6 74 0.0016 29.4 3.4 54 166-219 18-72 (331)
288 PF14893 PNMA: PNMA 26.6 45 0.00097 30.8 2.0 26 71-96 16-41 (331)
289 PF04026 SpoVG: SpoVG; InterP 26.3 1.2E+02 0.0025 21.8 3.6 26 99-124 2-27 (84)
290 PHA00370 III attachment protei 26.0 4.2E+02 0.0092 23.3 7.5 7 313-319 46-52 (297)
291 KOG3702 Nuclear polyadenylated 25.5 1.5E+02 0.0033 29.8 5.4 72 168-241 513-584 (681)
292 PF15258 FAM222A: Protein fami 25.2 1.2E+02 0.0026 29.3 4.5 12 73-84 194-205 (506)
293 KOG1432 Predicted DNA repair e 24.9 42 0.00092 30.9 1.5 6 168-173 104-109 (379)
294 KOG4274 Positive cofactor 2 (P 24.9 1.2E+02 0.0025 30.1 4.4 15 118-132 389-403 (742)
295 PRK13259 regulatory protein Sp 24.5 1.2E+02 0.0026 22.2 3.5 26 99-124 2-27 (94)
296 PRK11901 hypothetical protein; 24.3 3.1E+02 0.0067 25.2 6.7 63 164-231 243-306 (327)
297 CHL00030 rpl23 ribosomal prote 23.4 3E+02 0.0065 20.1 5.5 34 75-108 20-55 (93)
298 PTZ00191 60S ribosomal protein 23.3 2.9E+02 0.0062 22.1 5.6 55 75-132 83-139 (145)
299 PF14026 DUF4242: Protein of u 22.9 2.7E+02 0.0059 19.4 8.3 62 76-140 3-71 (77)
300 COG2088 SpoVG Uncharacterized 22.8 1.2E+02 0.0026 21.7 3.0 26 99-124 2-27 (95)
301 PTZ00191 60S ribosomal protein 22.8 2E+02 0.0042 23.0 4.6 52 277-328 84-140 (145)
302 KOG4365 Uncharacterized conser 22.7 14 0.00031 34.7 -1.9 64 73-137 3-66 (572)
303 COG0445 GidA Flavin-dependent 22.5 3E+02 0.0064 27.6 6.6 87 115-202 236-336 (621)
304 PF11411 DNA_ligase_IV: DNA li 22.2 64 0.0014 18.8 1.4 16 83-98 19-34 (36)
305 smart00596 PRE_C2HC PRE_C2HC d 22.2 1.6E+02 0.0035 20.1 3.5 63 181-246 2-64 (69)
306 cd04889 ACT_PDH-BS-like C-term 22.1 2.1E+02 0.0046 17.9 4.4 39 289-327 13-55 (56)
307 COG5470 Uncharacterized conser 21.8 2.1E+02 0.0045 21.0 4.2 20 114-133 52-71 (96)
308 PF08734 GYD: GYD domain; Int 21.8 3.2E+02 0.0069 19.7 6.1 46 87-136 22-68 (91)
309 KOG1295 Nonsense-mediated deca 21.7 1.2E+02 0.0026 28.3 3.7 61 275-335 8-77 (376)
310 PF09707 Cas_Cas2CT1978: CRISP 21.6 2.3E+02 0.005 20.4 4.4 46 74-122 26-71 (86)
311 KOG4679 Uncharacterized protei 21.1 1.3E+02 0.0028 28.9 3.8 15 85-99 254-268 (572)
312 KOG2044 5'-3' exonuclease HKE1 20.4 2.3E+02 0.005 29.5 5.6 18 210-227 632-649 (931)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-48 Score=342.93 Aligned_cols=254 Identities=17% Similarity=0.348 Sum_probs=224.4
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
...+.|||+.||.|+.|+||..||++.|+|.++++|+|+.+|.+||||||.|.+.++|.+|++.||+..|. .++.|.+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999986 35555555
Q ss_pred ccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCC-CCCcceEEEEEeCCHHHHHHHHHHh
Q 015468 151 WATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT-TGRSKGYGFVRFGDESEQLRSMTEM 229 (406)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l 229 (406)
.+. .+++|||+|||.++++++|.+.|+++-..|.+|.|..++. ..+++|||||+|.+...|..|...|
T Consensus 160 ~Sv-----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 160 VSV-----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred Eee-----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 433 3458999999999999999999999766799998888754 4689999999999999999998876
Q ss_pred cC--cccCCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEee
Q 015468 230 NG--VLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP 307 (406)
Q Consensus 230 ~g--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~ 307 (406)
-. ..+.|..+.|+|+.+...-.. +.....+.|||+||+.++|+|.|+++|+.||.|++|+.+
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~de----------------d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~ 292 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEPDE----------------DTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP 292 (506)
T ss_pred cCCceeecCCcceeeccCcccCCCh----------------hhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc
Confidence 43 567899999999998764432 233445889999999999999999999999999999998
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCCCCCC
Q 015468 308 AGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 354 (406)
Q Consensus 308 ~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~ 354 (406)
+| +|||.|.++++|.+|++.+|+++|+|..|+|.+|++...+...
T Consensus 293 rD--YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 293 RD--YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred cc--eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccc
Confidence 76 9999999999999999999999999999999999998766533
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=4.1e-47 Score=362.47 Aligned_cols=250 Identities=17% Similarity=0.327 Sum_probs=211.1
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....++|||+|||++++|++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|++||+.||+..+.. .+.+.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~-Gr~l~V 132 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP-GRLLGV 132 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecC-Cccccc
Confidence 345689999999999999999999999999999999999 789999999999999999999999999988853 233333
Q ss_pred cccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCC-CccEEEEEe-cCCCCCcceEEEEEeCCHHHHHHHHH
Q 015468 150 NWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS-SVKGAKVVT-DRTTGRSKGYGFVRFGDESEQLRSMT 227 (406)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g-~i~~~~~~~-~~~~~~~~g~~fv~f~~~~~a~~a~~ 227 (406)
.++ ...++|||+|||.++++++|.++|++ ++ .+.++.+.. ....++++|||||+|.+.++|..|++
T Consensus 133 ~~S-----------~~~~rLFVgNLP~~~TeeeL~eeFsk-v~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Air 200 (578)
T TIGR01648 133 CIS-----------VDNCRLFVGGIPKNKKREEILEEFSK-VTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARR 200 (578)
T ss_pred ccc-----------ccCceeEeecCCcchhhHHHHHHhhc-ccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHH
Confidence 332 13458999999999999999999998 64 455554443 23456789999999999999999998
Q ss_pred HhcC--cccCCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccC--CceEE
Q 015468 228 EMNG--VLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY--GELVH 303 (406)
Q Consensus 228 ~l~g--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--G~v~~ 303 (406)
.|+. ..+.++.|.|+|+.+...... ......++|||+||+.++++++|+++|+.| |.|++
T Consensus 201 kL~~gki~l~Gr~I~VdwA~p~~~~d~----------------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~r 264 (578)
T TIGR01648 201 KLMPGRIQLWGHVIAVDWAEPEEEVDE----------------DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVER 264 (578)
T ss_pred HhhccceEecCceEEEEeecccccccc----------------cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 8764 457899999999877543221 112234789999999999999999999999 99999
Q ss_pred EEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCCC
Q 015468 304 VKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNK 351 (406)
Q Consensus 304 v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 351 (406)
|.+++ +||||+|++.++|.+|++.||+.+|+|+.|+|+|++++...
T Consensus 265 V~~~r--gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 265 VKKIR--DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred EEeec--CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 98874 59999999999999999999999999999999999986543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=4.3e-47 Score=355.91 Aligned_cols=271 Identities=27% Similarity=0.458 Sum_probs=224.0
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
...+|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|+|..|.++ .+++.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~--~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK--TIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCe--eEEEEe
Confidence 467899999999999999999999999999999999999999999999999999999999999999999754 555555
Q ss_pred cccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 015468 152 ATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (406)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 231 (406)
+... .......+|||+|||..+++++|+++|++ ||.|..+.++.+..++.++|+|||+|.+.++|..|++.|++
T Consensus 80 a~~~-----~~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 80 ARPS-----SDSIKGANLYVSGLPKTMTQHELESIFSP-FGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred eccc-----ccccccceEEECCccccCCHHHHHHHHhc-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 5432 12234568999999999999999999998 99999999999988889999999999999999999999999
Q ss_pred cccCC--cceEeCcCccccccccccccc----------cc----------------------------------------
Q 015468 232 VLCST--RPMRIGPAATKKAATGQQYQK----------AT---------------------------------------- 259 (406)
Q Consensus 232 ~~~~g--~~i~v~~~~~~~~~~~~~~~~----------~~---------------------------------------- 259 (406)
..+.+ +.|.|.++............. ..
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQH 233 (352)
T ss_pred CccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhc
Confidence 98877 567888776543111000000 00
Q ss_pred ----------cCC-----------CCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcE
Q 015468 260 ----------YQN-----------TQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRC 312 (406)
Q Consensus 260 ----------~~~-----------~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~ 312 (406)
... ...........+.+|||+|||+++++++|+++|++||.|++|+|+++ +||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~ 313 (352)
T TIGR01661 234 AVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGY 313 (352)
T ss_pred ccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccce
Confidence 000 00000011223457999999999999999999999999999999865 799
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 313 GFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 313 afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
|||+|++.++|.+|+..|||..|+||.|+|+|+.++..
T Consensus 314 aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 314 GFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999999999998753
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-47 Score=315.10 Aligned_cols=242 Identities=30% Similarity=0.615 Sum_probs=210.7
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.+++.|||||+||+.++||+-|..||+..|.|++|+|+.+ .++
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------------e~~ 44 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------------ELK 44 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------hhc
Confidence 3567899999999999999999999999999999999875 356
Q ss_pred ecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 015468 149 LNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (406)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 228 (406)
+.|+......++........+||+.|...++.++|++.|.+ ||+|.+++|++|..|+++|||+||.|...++|+.||..
T Consensus 45 v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~p-FGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 45 VNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAP-FGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ 123 (321)
T ss_pred cccccCcccCCCCccccceeEEehhcchhcchHHHHHHhcc-ccccccceEeecccCCcccceeEEeccchHHHHHHHHH
Confidence 66666654445555555778999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCcccCCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeC
Q 015468 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA 308 (406)
Q Consensus 229 l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~ 308 (406)
|||.+|++|.|+.+|+..+........ ..-...-....+++++|||+|++..++|++|++.|+.||.|.+|+|++
T Consensus 124 MnGqWlG~R~IRTNWATRKp~e~n~~~-----ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk 198 (321)
T KOG0148|consen 124 MNGQWLGRRTIRTNWATRKPSEMNGKP-----LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK 198 (321)
T ss_pred hCCeeeccceeeccccccCccccCCCC-----ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec
Confidence 999999999999999998873221100 001111234567889999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCCCCC
Q 015468 309 GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQS 353 (406)
Q Consensus 309 ~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 353 (406)
++|++||.|++.|+|.+||..+|+.+|+|..++|.|.+.......
T Consensus 199 ~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 199 DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred ccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 999999999999999999999999999999999999998765543
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7e-43 Score=345.78 Aligned_cols=270 Identities=23% Similarity=0.437 Sum_probs=223.2
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
...+|||+|||.++++++|+++|+.||.|.+|++..+ .+|+++|||||+|.+.++|.+|++.++|..+.++.+.+ ..
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v--~~ 163 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV--GR 163 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE--ec
Confidence 3457999999999999999999999999999999998 47889999999999999999999999999987654444 32
Q ss_pred cccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 015468 152 ATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (406)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 231 (406)
...............++|||+||+.++++++|+++|+. ||.|.++.++.+ .+++++|||||+|.+.++|.+|++.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~-fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 164 FIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAK-FGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred cccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHh-cCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 22111111223344568999999999999999999998 999999999998 4789999999999999999999999999
Q ss_pred cccC----CcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEee
Q 015468 232 VLCS----TRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP 307 (406)
Q Consensus 232 ~~~~----g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~ 307 (406)
..+. ++.+.|.++..+..+......... ............++|||+||++++++++|+++|+.||.|++|+|+
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~---~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~ 318 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAELRRKFE---ELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVM 318 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHHHhhHH---hhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEE
Confidence 9999 999999888765543211100000 000011223455789999999999999999999999999999997
Q ss_pred CC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 308 AG-----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 308 ~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
.+ +|+|||+|++.++|.+|+..||+..++|+.|.|.++..+.
T Consensus 319 ~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 319 LDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred ECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 64 6899999999999999999999999999999999998764
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.5e-43 Score=287.40 Aligned_cols=273 Identities=27% Similarity=0.474 Sum_probs=233.1
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.++....|.|.-||..+|+|||+.+|...|+|++|++++|+.+|.+.||+||.|.++++|++|+..|||..+. .++|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ--~KTIK 114 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ--NKTIK 114 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeec--cceEE
Confidence 4555667999999999999999999999999999999999999999999999999999999999999999884 67888
Q ss_pred ecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 015468 149 LNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (406)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 228 (406)
++++.++. +......|||.+||..+|..||..+|++ ||.|...+|+.|..+|.++|.+||.|+..++|+.|++.
T Consensus 115 VSyARPSs-----~~Ik~aNLYvSGlPktMtqkelE~iFs~-fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 115 VSYARPSS-----DSIKDANLYVSGLPKTMTQKELEQIFSP-FGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEeccCCh-----hhhcccceEEecCCccchHHHHHHHHHH-hhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 88887553 3344558999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCcccCC--cceEeCcCcccccccccccccccc---------------------------------CC---------CC
Q 015468 229 MNGVLCST--RPMRIGPAATKKAATGQQYQKATY---------------------------------QN---------TQ 264 (406)
Q Consensus 229 l~g~~~~g--~~i~v~~~~~~~~~~~~~~~~~~~---------------------------------~~---------~~ 264 (406)
|||..-.| .+|.|+|+...............+ .+ ..
T Consensus 189 lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~ 268 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAG 268 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeee
Confidence 99987665 478999987754433221000000 00 00
Q ss_pred CCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCc
Q 015468 265 GSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQ 338 (406)
Q Consensus 265 ~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~ 338 (406)
...+.......+|||-||..+++|.-|.++|..||.|..|+|++| |||+||++.+-++|..|+..|||..+++|
T Consensus 269 ~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 269 VNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred eccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce
Confidence 002233445789999999999999999999999999999999987 89999999999999999999999999999
Q ss_pred eeEEeeccCCC
Q 015468 339 SIRLSWGRSPS 349 (406)
Q Consensus 339 ~l~v~~~~~~~ 349 (406)
.|.|+|...+.
T Consensus 349 vLQVsFKtnk~ 359 (360)
T KOG0145|consen 349 VLQVSFKTNKA 359 (360)
T ss_pred EEEEEEecCCC
Confidence 99999987653
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.9e-42 Score=342.68 Aligned_cols=253 Identities=30% Similarity=0.539 Sum_probs=221.5
Q ss_pred eEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceeccccc
Q 015468 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATY 154 (406)
Q Consensus 75 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~~ 154 (406)
+|||+|||+++||++|+++|+.||.|.+|+|+++..+++++|||||+|.+.++|++|++.|++..+.+ +.|++.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~g--k~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGG--KPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC--eeEEeecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999998864 5677777654
Q ss_pred CCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 015468 155 GAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC 234 (406)
Q Consensus 155 ~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 234 (406)
+.... .....+|||+||+.++++++|+++|++ ||.|.+|++..+ .+++++|||||+|.+.++|.+|++.+++..+
T Consensus 80 ~~~~~---~~~~~~vfV~nLp~~~~~~~L~~~F~~-~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 80 DPSLR---RSGVGNIFVKNLDKSVDNKALFDTFSK-FGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccccc---ccCCCceEEcCCCccCCHHHHHHHHHh-cCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 33222 223458999999999999999999998 999999999988 4788999999999999999999999999999
Q ss_pred CCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----
Q 015468 235 STRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG----- 309 (406)
Q Consensus 235 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~----- 309 (406)
.++.|.|.....+.... .......++|||+||+.++|+++|+++|+.||.|.++.+.++
T Consensus 155 ~~~~i~v~~~~~~~~~~----------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~ 218 (562)
T TIGR01628 155 NDKEVYVGRFIKKHERE----------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRS 218 (562)
T ss_pred cCceEEEeccccccccc----------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCc
Confidence 99999997665543321 012233467999999999999999999999999999998764
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCceeC----CceeEEeeccCCCC
Q 015468 310 KRCGFVQFANRTCAEQALSVLNGTQLG----GQSIRLSWGRSPSN 350 (406)
Q Consensus 310 ~~~afV~f~~~~~a~~a~~~l~~~~~~----g~~l~v~~~~~~~~ 350 (406)
+|+|||+|++.++|.+|++.|++..+. |+.|.|.++..+..
T Consensus 219 ~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 219 RGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred ccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh
Confidence 679999999999999999999999999 99999988865543
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=9.9e-41 Score=322.06 Aligned_cols=265 Identities=17% Similarity=0.193 Sum_probs=208.1
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHh--CCCCCCCCCcccee
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF--NGTQMPSTEQNFRL 149 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~~~~~~~~~~~v~~ 149 (406)
.+++|||+|||+++++++|+++|+.||.|.+|++++ ++++|||+|.+.++|++|++.+ ++..+. +..+.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~--g~~l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIR--GQPAFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEc--CeEEEE
Confidence 368999999999999999999999999999999986 4689999999999999999975 455565 456666
Q ss_pred cccccCCCCCcC-------CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHH
Q 015468 150 NWATYGAGERRQ-------DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222 (406)
Q Consensus 150 ~~~~~~~~~~~~-------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a 222 (406)
.|+......... ......+|+|+||++++++++|+++|++ ||.|.+|.++++.. +++|||+|.+.++|
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~-~G~V~~v~i~~~~~----~~~afVef~~~~~A 147 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNP-YGKVLRIVTFTKNN----VFQALVEFESVNSA 147 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhc-cCCEEEEEEEecCC----ceEEEEEECCHHHH
Confidence 666433211111 1112347899999999999999999998 99999999987642 46899999999999
Q ss_pred HHHHHHhcCcccCC--cceEeCcCcccccccccccccc----------------------ccC----------------C
Q 015468 223 LRSMTEMNGVLCST--RPMRIGPAATKKAATGQQYQKA----------------------TYQ----------------N 262 (406)
Q Consensus 223 ~~a~~~l~g~~~~g--~~i~v~~~~~~~~~~~~~~~~~----------------------~~~----------------~ 262 (406)
.+|++.|||..|.+ +.|+|+|+............+. ... .
T Consensus 148 ~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 227 (481)
T TIGR01649 148 QHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSS 227 (481)
T ss_pred HHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCccccc
Confidence 99999999999965 4788888765332110000000 000 0
Q ss_pred C---------------------C---------------CCCCCCCCCCceEEEcCCCc-cCcHHHHHhhhccCCceEEEE
Q 015468 263 T---------------------Q---------------GSQGENDPNNTTIFVGGLDP-SVTDDILKTVFGQYGELVHVK 305 (406)
Q Consensus 263 ~---------------------~---------------~~~~~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~G~v~~v~ 305 (406)
. . .........+++|||+||++ .+++++|+++|+.||.|.+|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vk 307 (481)
T TIGR01649 228 HGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVK 307 (481)
T ss_pred CCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 0 0 00001134668999999997 699999999999999999999
Q ss_pred eeCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 306 IPAG-KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 306 i~~~-~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
|+++ +++|||+|.+.++|.+|+..||+..|.|+.|+|++++...
T Consensus 308 i~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 308 FMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred EEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 9876 6899999999999999999999999999999999987654
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=8.9e-40 Score=316.66 Aligned_cols=276 Identities=21% Similarity=0.360 Sum_probs=219.8
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|+. |+|..+.+..+.+..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4557899999999999999999999999999999999999999999999999999999999997 999999776665554
Q ss_pred cccccCCCC-----CcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 015468 150 NWATYGAGE-----RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLR 224 (406)
Q Consensus 150 ~~~~~~~~~-----~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 224 (406)
......... ........++|||+||+..+++++|+++|++ ||.|..|.++.+..+++++|||||+|.+.++|.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~-~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEP-FGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 332211110 0111123579999999999999999999998 9999999999998888999999999999999999
Q ss_pred HHHHhcCcccCCcceEeCcCccccccccccc------------------------c---ccc------cCCC--------
Q 015468 225 SMTEMNGVLCSTRPMRIGPAATKKAATGQQY------------------------Q---KAT------YQNT-------- 263 (406)
Q Consensus 225 a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~------------------------~---~~~------~~~~-------- 263 (406)
|+..|++..|.|+.|.|.++........... . ... ....
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQ 323 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhc
Confidence 9999999999999999999653211100000 0 000 0000
Q ss_pred --------------------------CCCCC--CCCCCCceEEEcCCCccCc----------HHHHHhhhccCCceEEEE
Q 015468 264 --------------------------QGSQG--ENDPNNTTIFVGGLDPSVT----------DDILKTVFGQYGELVHVK 305 (406)
Q Consensus 264 --------------------------~~~~~--~~~~~~~~l~v~~l~~~~~----------~~~l~~~f~~~G~v~~v~ 305 (406)
..... .......+|+|.||-...+ .+||++.|++||.|++|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~ 403 (457)
T TIGR01622 324 KLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIY 403 (457)
T ss_pred cccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEE
Confidence 00000 0224568899999955433 368999999999999999
Q ss_pred eeC--CCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccC
Q 015468 306 IPA--GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347 (406)
Q Consensus 306 i~~--~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 347 (406)
|.. ..|++||+|.++++|.+|+..|||..|+|+.|.|.+...
T Consensus 404 v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 404 VDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred EeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 863 479999999999999999999999999999999998754
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.9e-39 Score=308.92 Aligned_cols=174 Identities=19% Similarity=0.302 Sum_probs=151.7
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
..++|||+|||+++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..|.++.+.|....
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999987655554221
Q ss_pred cccCCC----CCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015468 152 ATYGAG----ERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (406)
Q Consensus 152 ~~~~~~----~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 227 (406)
...... .........++|||+||+.++++++|+++|+. ||.|.+++|.++..+++++|||||+|.+.++|.+|++
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~-FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 111000 01112234568999999999999999999998 9999999999998889999999999999999999999
Q ss_pred HhcCcccCCcceEeCcCcc
Q 015468 228 EMNGVLCSTRPMRIGPAAT 246 (406)
Q Consensus 228 ~l~g~~~~g~~i~v~~~~~ 246 (406)
.||+..++|+.|+|.++..
T Consensus 265 amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HhCCCeeCCeEEEEEecCC
Confidence 9999999999999988765
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.4e-39 Score=309.99 Aligned_cols=267 Identities=19% Similarity=0.295 Sum_probs=212.4
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
...+|||+||++++|+++|+++|+.||.|.+|+|+++. .+++|||+|.+.++|.+|++.|||..|.+....+++.|
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 34579999999999999999999999999999998864 34799999999999999999999999976555555555
Q ss_pred cccCCC----------------CC--------------------------------------------------------
Q 015468 152 ATYGAG----------------ER-------------------------------------------------------- 159 (406)
Q Consensus 152 ~~~~~~----------------~~-------------------------------------------------------- 159 (406)
+..... ..
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 432110 00
Q ss_pred ------------------cCCCCCCceEEEcCCCC-CCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHH
Q 015468 160 ------------------RQDDGPDFTIFVGDLAA-DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220 (406)
Q Consensus 160 ------------------~~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~ 220 (406)
.....++++|||+||+. .+++++|+++|+. ||.|.+|+++++. +|+|||+|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~-yG~V~~vki~~~~-----~g~afV~f~~~~ 324 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCV-YGNVERVKFMKNK-----KETALIEMADPY 324 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCC-----CCEEEEEECCHH
Confidence 00012456999999998 6999999999998 9999999999873 689999999999
Q ss_pred HHHHHHHHhcCcccCCcceEeCcCcccccccccccc---c----cccCCC--C-------CCCCCCCCCCceEEEcCCCc
Q 015468 221 EQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQ---K----ATYQNT--Q-------GSQGENDPNNTTIFVGGLDP 284 (406)
Q Consensus 221 ~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~---~----~~~~~~--~-------~~~~~~~~~~~~l~v~~l~~ 284 (406)
+|..|+..||+..+.|+.|+|.++............ . ..+... . .......+++.+|||+|||.
T Consensus 325 ~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~ 404 (481)
T TIGR01649 325 QAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPL 404 (481)
T ss_pred HHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCC
Confidence 999999999999999999999987654322111000 0 000000 0 00011234678999999999
Q ss_pred cCcHHHHHhhhccCCc--eEEEEeeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCce------eEEeeccCC
Q 015468 285 SVTDDILKTVFGQYGE--LVHVKIPAG----KRCGFVQFANRTCAEQALSVLNGTQLGGQS------IRLSWGRSP 348 (406)
Q Consensus 285 ~~~~~~l~~~f~~~G~--v~~v~i~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~------l~v~~~~~~ 348 (406)
++++++|+++|+.||. |..|++... +++|||+|++.++|.+||..||+..|.++. |+|+|++++
T Consensus 405 ~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 405 SVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 9999999999999998 888888654 589999999999999999999999999985 999999864
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.5e-39 Score=284.38 Aligned_cols=280 Identities=23% Similarity=0.431 Sum_probs=235.0
Q ss_pred CCCCCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCC-CCCCC
Q 015468 65 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGT-QMPST 143 (406)
Q Consensus 65 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~-~~~~~ 143 (406)
.....+.+.-+|||+-||..++|+||+++|++||.|.+|.|++|+.++.++|||||+|.+.++|.+|+.+|++. .|.+.
T Consensus 26 ~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 26 HTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred CCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 34445566778999999999999999999999999999999999999999999999999999999999999885 58888
Q ss_pred CccceecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 015468 144 EQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQL 223 (406)
Q Consensus 144 ~~~v~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 223 (406)
.+.|.++++..+. .+....++|||+.|+..++|+|++++|++ ||.|++|.|++| ..+.+|||+||.|.+.|.|.
T Consensus 106 ~~pvqvk~Ad~E~----er~~~e~KLFvg~lsK~~te~evr~iFs~-fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~ 179 (510)
T KOG0144|consen 106 HHPVQVKYADGER----ERIVEERKLFVGMLSKQCTENEVREIFSR-FGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAV 179 (510)
T ss_pred Ccceeecccchhh----hccccchhhhhhhccccccHHHHHHHHHh-hCccchhhheec-ccccccceeEEEEehHHHHH
Confidence 9999999887443 22245669999999999999999999998 999999999999 47999999999999999999
Q ss_pred HHHHHhcCcc-cC--CcceEeCcCcccccccccccc--------------------------------------------
Q 015468 224 RSMTEMNGVL-CS--TRPMRIGPAATKKAATGQQYQ-------------------------------------------- 256 (406)
Q Consensus 224 ~a~~~l~g~~-~~--g~~i~v~~~~~~~~~~~~~~~-------------------------------------------- 256 (406)
.||+.||+.. +. ..+|.|+|+++++.+..+...
T Consensus 180 ~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~ 259 (510)
T KOG0144|consen 180 AAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGT 259 (510)
T ss_pred HHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcc
Confidence 9999999954 44 458999999987765533200
Q ss_pred ----------------------------ccccCCCC-------------------------C---C--------------
Q 015468 257 ----------------------------KATYQNTQ-------------------------G---S-------------- 266 (406)
Q Consensus 257 ----------------------------~~~~~~~~-------------------------~---~-------------- 266 (406)
........ . +
T Consensus 260 l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p 339 (510)
T KOG0144|consen 260 LGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFP 339 (510)
T ss_pred cccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCC
Confidence 00000000 0 0
Q ss_pred -----------------------------------------------------------------------------CCC
Q 015468 267 -----------------------------------------------------------------------------QGE 269 (406)
Q Consensus 267 -----------------------------------------------------------------------------~~~ 269 (406)
...
T Consensus 340 ~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~ 419 (510)
T KOG0144|consen 340 GTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQV 419 (510)
T ss_pred CCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccc
Confidence 123
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
..+.+..|||.+||.+.-+.+|...|..||.|.+.++.-| +.|+||.|++..+|..||..|||..++.++++|.
T Consensus 420 eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQ 499 (510)
T KOG0144|consen 420 EGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQ 499 (510)
T ss_pred cCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEE
Confidence 4456788999999999999999999999999999877654 6799999999999999999999999999999999
Q ss_pred eccCCCC
Q 015468 344 WGRSPSN 350 (406)
Q Consensus 344 ~~~~~~~ 350 (406)
..+.+..
T Consensus 500 lk~~~~n 506 (510)
T KOG0144|consen 500 LKRDRNN 506 (510)
T ss_pred eeeccCC
Confidence 8876543
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.9e-38 Score=311.72 Aligned_cols=274 Identities=18% Similarity=0.274 Sum_probs=208.3
Q ss_pred CCCCCCCCceEEEeCCCCCcCHHHHHHHhccc------------CCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHH
Q 015468 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHT------------GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133 (406)
Q Consensus 66 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~------------G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 133 (406)
........++|||+|||+++|+++|++||..+ +.|..+.+. +.++||||+|.+.++|..||.
T Consensus 168 ~~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~ 241 (509)
T TIGR01642 168 QQQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMA 241 (509)
T ss_pred CccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhc
Confidence 34556778999999999999999999999975 234444433 368999999999999999995
Q ss_pred HhCCCCCCCCCccceecccccCCC----------------------CCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhC
Q 015468 134 TFNGTQMPSTEQNFRLNWATYGAG----------------------ERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191 (406)
Q Consensus 134 ~l~~~~~~~~~~~v~~~~~~~~~~----------------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~ 191 (406)
|+|..|.+..+.|.......... .........++|||+|||..+++++|+++|+. |
T Consensus 242 -l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~ 319 (509)
T TIGR01642 242 -LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES-F 319 (509)
T ss_pred -CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh-c
Confidence 99998877554443211110000 00001233568999999999999999999998 9
Q ss_pred CCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccccccccccccc----cccCCC---C
Q 015468 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQK----ATYQNT---Q 264 (406)
Q Consensus 192 g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~----~~~~~~---~ 264 (406)
|.|..+.++++..+|.++|||||+|.+.++|..|++.|++..|.|+.|.|.++............. ...... .
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQ 399 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchh
Confidence 999999999998899999999999999999999999999999999999999986543222110000 000000 0
Q ss_pred CCCCCCCCCCceEEEcCCCccC----------cHHHHHhhhccCCceEEEEeeCC---------CcEEEEEeCCHHHHHH
Q 015468 265 GSQGENDPNNTTIFVGGLDPSV----------TDDILKTVFGQYGELVHVKIPAG---------KRCGFVQFANRTCAEQ 325 (406)
Q Consensus 265 ~~~~~~~~~~~~l~v~~l~~~~----------~~~~l~~~f~~~G~v~~v~i~~~---------~~~afV~f~~~~~a~~ 325 (406)
.........+.+|+|.||.... ..++|+++|++||.|++|.|++. .|++||+|++.++|.+
T Consensus 400 ~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~ 479 (509)
T TIGR01642 400 SILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEK 479 (509)
T ss_pred hhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHH
Confidence 0011123456889999996421 23679999999999999999764 4789999999999999
Q ss_pred HHHHhCCceeCCceeEEeeccC
Q 015468 326 ALSVLNGTQLGGQSIRLSWGRS 347 (406)
Q Consensus 326 a~~~l~~~~~~g~~l~v~~~~~ 347 (406)
|+..|||..|+|+.|.|+|...
T Consensus 480 A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 480 AMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHcCCCEECCeEEEEEEeCH
Confidence 9999999999999999998754
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.2e-37 Score=276.17 Aligned_cols=274 Identities=20% Similarity=0.336 Sum_probs=219.4
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecccc
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~ 153 (406)
.||||++||++++.++|.++|+.+|+|..|.++.++.++.++||+||+|.-.|++..|+..++++.+.++.+.+.+....
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999998765555443222
Q ss_pred cCCC--------------CC-----cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEE
Q 015468 154 YGAG--------------ER-----RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFV 214 (406)
Q Consensus 154 ~~~~--------------~~-----~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv 214 (406)
.... .. ..-+.+..+|+|+||||.+...+|+.+|+. ||.|..|.|.+.. .|+..|||||
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~-~G~V~Ei~IP~k~-dgklcGFaFV 163 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSN-FGKVVEIVIPRKK-DGKLCGFAFV 163 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhh-cceEEEEEcccCC-CCCccceEEE
Confidence 1111 00 011223568999999999999999999998 9999999999775 4555599999
Q ss_pred EeCCHHHHHHHHHHhcCcccCCcceEeCcCcccccccccc--------------cccc---------------------c
Q 015468 215 RFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ--------------YQKA---------------------T 259 (406)
Q Consensus 215 ~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~--------------~~~~---------------------~ 259 (406)
.|....+|..|++.+|+..|+||+|.|.|+..+....... .... .
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeE 243 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEE 243 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccc
Confidence 9999999999999999999999999999998764433210 0000 0
Q ss_pred --c-------------------CCC---CCC----------CCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEE
Q 015468 260 --Y-------------------QNT---QGS----------QGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305 (406)
Q Consensus 260 --~-------------------~~~---~~~----------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~ 305 (406)
. ... ... ..+......+|||.|||+++++++|+++|+.||.|..+.
T Consensus 244 e~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~ 323 (678)
T KOG0127|consen 244 ETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAI 323 (678)
T ss_pred cccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEE
Confidence 0 000 000 011122348899999999999999999999999999998
Q ss_pred eeCC------CcEEEEEeCCHHHHHHHHHHh-----CC-ceeCCceeEEeeccCCC
Q 015468 306 IPAG------KRCGFVQFANRTCAEQALSVL-----NG-TQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 306 i~~~------~~~afV~f~~~~~a~~a~~~l-----~~-~~~~g~~l~v~~~~~~~ 349 (406)
|..+ +|+|||.|.+..+|..||... .+ ..+.||.|.|..|-.+.
T Consensus 324 iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 324 IVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred EEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 8754 799999999999999999976 23 56899999999887653
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=7.4e-36 Score=272.28 Aligned_cols=170 Identities=28% Similarity=0.525 Sum_probs=152.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
......++|||++||+++++++|+++|+. ||.|++|+|++|..+++++|||||+|.++++|++|++.|++..+.++.|+
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~-~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRT-IGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 34556779999999999999999999998 99999999999988999999999999999999999999999999999999
Q ss_pred eCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEE
Q 015468 241 IGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGF 314 (406)
Q Consensus 241 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~af 314 (406)
|.++.+.... ...++|||+|||.++++++|+++|++||.|++|+|+++ +++||
T Consensus 181 V~~a~p~~~~---------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aF 239 (346)
T TIGR01659 181 VSYARPGGES---------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAF 239 (346)
T ss_pred eecccccccc---------------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEE
Confidence 9997653211 12367999999999999999999999999999999876 48999
Q ss_pred EEeCCHHHHHHHHHHhCCceeCC--ceeEEeeccCCCCCC
Q 015468 315 VQFANRTCAEQALSVLNGTQLGG--QSIRLSWGRSPSNKQ 352 (406)
Q Consensus 315 V~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~~~~ 352 (406)
|+|++.++|.+||+.||+..+.+ +.|+|.+++......
T Consensus 240 V~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 240 VRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred EEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccccc
Confidence 99999999999999999999876 689999998765543
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=5.1e-33 Score=253.70 Aligned_cols=172 Identities=23% Similarity=0.480 Sum_probs=152.3
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.....++|||+|||+++|+++|+++|+.||.|++|+|+++..+++++|||||+|.++++|++|++.|++..|.+ +.|+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g--r~i~ 180 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN--KRLK 180 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC--ceee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999965 4555
Q ss_pred ecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 015468 149 LNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (406)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 228 (406)
+.++.... .....++|||+|||.++++++|+++|++ ||.|+.++|+++..+++++|+|||+|.+.++|++||+.
T Consensus 181 V~~a~p~~-----~~~~~~~lfV~nLp~~vtee~L~~~F~~-fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 181 VSYARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFGK-YGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred eecccccc-----cccccceeEEeCCCCcccHHHHHHHHHh-cCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 66654321 2233568999999999999999999998 99999999999988999999999999999999999999
Q ss_pred hcCcccCC--cceEeCcCcccc
Q 015468 229 MNGVLCST--RPMRIGPAATKK 248 (406)
Q Consensus 229 l~g~~~~g--~~i~v~~~~~~~ 248 (406)
|++..+.+ +.|+|.++....
T Consensus 255 lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 255 LNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred hCCCccCCCceeEEEEECCccc
Confidence 99998866 678888876643
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-32 Score=250.75 Aligned_cols=241 Identities=29% Similarity=0.526 Sum_probs=213.9
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecccc
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~ 153 (406)
..|||+ +++||..|.++|+.+|.|.++++++|. + +-|||||.|.++++|++|++++|...+. +..+++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~--~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLK--GKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccC--CcEEEeehhc
Confidence 358999 899999999999999999999999997 5 9999999999999999999999999995 5778888877
Q ss_pred cCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 015468 154 YGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (406)
Q Consensus 154 ~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 233 (406)
.++.. |||.||+.+++..+|.++|+. ||.|.+|++.++. .| ++|+ ||+|+++++|.+|++.+||..
T Consensus 74 rd~~~----------~~i~nl~~~~~~~~~~d~f~~-~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 74 RDPSL----------VFIKNLDESIDNKSLYDTFSE-FGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred cCCce----------eeecCCCcccCcHHHHHHHHh-hcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 55433 999999999999999999998 9999999999994 45 9999 999999999999999999999
Q ss_pred cCCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC----
Q 015468 234 CSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---- 309 (406)
Q Consensus 234 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~---- 309 (406)
+.++.|.|.....+..+...... ....-+.++|.+++.+++++.|.++|..+|.|.++.++.+
T Consensus 140 l~~kki~vg~~~~~~er~~~~~~-------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~ 206 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEEREAPLGE-------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGK 206 (369)
T ss_pred cCCCeeEEeeccchhhhcccccc-------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCC
Confidence 99999999888776655432111 2233466899999999999999999999999999999864
Q ss_pred -CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 310 -KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 310 -~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
++++||.|++.++|..|+..|++..+.+..+.|..+..+.
T Consensus 207 ~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 207 SKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKS 247 (369)
T ss_pred CCCccceeecChhHHHHHHHhccCCcCCccceeecccccch
Confidence 7899999999999999999999999999999998877643
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-32 Score=247.45 Aligned_cols=265 Identities=24% Similarity=0.455 Sum_probs=220.1
Q ss_pred EEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecccccC
Q 015468 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYG 155 (406)
Q Consensus 76 l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~~~ 155 (406)
|||.||+++++.++|.++|+.||.|.+|++.++. .| ++|| ||+|+++++|.+|++.+||..+.+..+.+-+......
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999984 55 9999 9999999999999999999999877666655443322
Q ss_pred CCCCcC-CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 015468 156 AGERRQ-DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC 234 (406)
Q Consensus 156 ~~~~~~-~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 234 (406)
...... ....-..+++.+++.+++.+.|.++|.. +|.|.++.++.+. .+++++|+||.|.+.++|..|++.+++..+
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~-~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~ 233 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSA-YGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIF 233 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcc-cCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcC
Confidence 211111 2233447899999999999999999998 9999999999984 677999999999999999999999999999
Q ss_pred CCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----
Q 015468 235 STRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG----- 309 (406)
Q Consensus 235 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~----- 309 (406)
.+..+.|..+..+......-... ................|||.||+..++++.|++.|+.||+|.+++|..+
T Consensus 234 ~~~~~~V~~aqkk~e~~~~l~~~---~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~s 310 (369)
T KOG0123|consen 234 GDKELYVGRAQKKSEREAELKRK---FEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKS 310 (369)
T ss_pred CccceeecccccchhhHHHHhhh---hHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCc
Confidence 99999998887743332211000 0001112233455678999999999999999999999999999988764
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 310 KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 310 ~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
+|++||+|.+.++|.+|+..+|+..+.++.|.|.++...
T Consensus 311 kG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~ 349 (369)
T KOG0123|consen 311 KGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRK 349 (369)
T ss_pred cceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhh
Confidence 899999999999999999999999999999999998843
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.98 E-value=7.8e-31 Score=251.00 Aligned_cols=221 Identities=17% Similarity=0.232 Sum_probs=171.6
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCC-eeEEEEEec-CCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRN-KQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
...++|||+|||+++++++|.++|++++. +.++.++.. ...++++|||||+|++.++|..|++.|+...+....+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 34688999999999999999999999975 555544432 2346789999999999999999999887655544567888
Q ss_pred ecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhC--CCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 015468 149 LNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY--SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226 (406)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~--g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 226 (406)
+.|+..............++|||+||++++++++|+++|++ | |.|++|.+++ +||||+|.+.++|++|+
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~-f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSE-FKPGKVERVKKIR--------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHh-cCCCceEEEEeec--------CeEEEEeCCHHHHHHHH
Confidence 88887655443333445678999999999999999999998 9 9999987753 49999999999999999
Q ss_pred HHhcCcccCCcceEeCcCcccccccccccccc-------ccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCC
Q 015468 227 TEMNGVLCSTRPMRIGPAATKKAATGQQYQKA-------TYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYG 299 (406)
Q Consensus 227 ~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G 299 (406)
+.||+.+|.|+.|+|.|+.+............ .............+.+.+++++|+++..+++.+.++|...|
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g 366 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPG 366 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCc
Confidence 99999999999999999987644311110000 00011112234455678899999999999999999998876
Q ss_pred c
Q 015468 300 E 300 (406)
Q Consensus 300 ~ 300 (406)
.
T Consensus 367 ~ 367 (578)
T TIGR01648 367 P 367 (578)
T ss_pred c
Confidence 4
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.9e-30 Score=247.24 Aligned_cols=175 Identities=22% Similarity=0.475 Sum_probs=150.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCc
Q 015468 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (406)
Q Consensus 166 ~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 245 (406)
.++|||+||++++++++|+++|++ ||.|.+|+++.|+.+++++|||||+|.+.++|.+|++.|||..+.|+.|+|.+..
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~-fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDP-FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHc-cCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 358999999999999999999998 9999999999999999999999999999999999999999999999999998654
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCC
Q 015468 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFAN 319 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~ 319 (406)
........ ...........++|||+||+.++++++|+++|+.||.|++++|.++ +|||||+|++
T Consensus 186 ~~p~a~~~----------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 186 NMPQAQPI----------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred cccccccc----------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECC
Confidence 32211100 0000111224578999999999999999999999999999999764 7899999999
Q ss_pred HHHHHHHHHHhCCceeCCceeEEeeccCCCCC
Q 015468 320 RTCAEQALSVLNGTQLGGQSIRLSWGRSPSNK 351 (406)
Q Consensus 320 ~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 351 (406)
.++|.+|+..||+..|+|+.|+|.++.++...
T Consensus 256 ~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 256 LQSQSEAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHHHHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 99999999999999999999999999976433
No 21
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=224.28 Aligned_cols=271 Identities=19% Similarity=0.282 Sum_probs=210.7
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecccc
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~ 153 (406)
|+|||+.|.+.+.|+.|+..|..||+|++|.+.+|+.|++.+|||||+|+-+|.|..|++.+||..+.++++.+.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999998766655422111
Q ss_pred cCCC----CCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 015468 154 YGAG----ERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM 229 (406)
Q Consensus 154 ~~~~----~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 229 (406)
.... .-..+...-++|||..+..+++++||+..|+. ||+|..|.+-+++..+..+||+|++|.+..+...|+..|
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEA-FG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHh-hcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 0000 00122234458999999999999999999998 999999999999888899999999999999999999999
Q ss_pred cCcccCCcceEeCcCcccccccccccc--------------------------------------------cccc-----
Q 015468 230 NGVLCSTRPMRIGPAATKKAATGQQYQ--------------------------------------------KATY----- 260 (406)
Q Consensus 230 ~g~~~~g~~i~v~~~~~~~~~~~~~~~--------------------------------------------~~~~----- 260 (406)
|-+.++|..|+|..+............ ....
T Consensus 273 NlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l 352 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTL 352 (544)
T ss_pred chhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCc
Confidence 999999999999776543221100000 0000
Q ss_pred -------------C---CCCCC--------------------------------------------------CC------
Q 015468 261 -------------Q---NTQGS--------------------------------------------------QG------ 268 (406)
Q Consensus 261 -------------~---~~~~~--------------------------------------------------~~------ 268 (406)
. +.... ..
T Consensus 353 ~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sA 432 (544)
T KOG0124|consen 353 PQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSA 432 (544)
T ss_pred cccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccH
Confidence 0 00000 00
Q ss_pred --------CCCCCCceEEEcCC--CccCc---HHHHHhhhccCCceEEEEeeCCCc----------EEEEEeCCHHHHHH
Q 015468 269 --------ENDPNNTTIFVGGL--DPSVT---DDILKTVFGQYGELVHVKIPAGKR----------CGFVQFANRTCAEQ 325 (406)
Q Consensus 269 --------~~~~~~~~l~v~~l--~~~~~---~~~l~~~f~~~G~v~~v~i~~~~~----------~afV~f~~~~~a~~ 325 (406)
-....+++|.++|+ |.+++ +.+|.+.+++||.|.+|.|...+. .-||+|....++.+
T Consensus 433 RhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~r 512 (544)
T KOG0124|consen 433 RHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHR 512 (544)
T ss_pred HHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHH
Confidence 01124567777887 33443 467999999999999999876432 35999999999999
Q ss_pred HHHHhCCceeCCceeEEeec
Q 015468 326 ALSVLNGTQLGGQSIRLSWG 345 (406)
Q Consensus 326 a~~~l~~~~~~g~~l~v~~~ 345 (406)
|..+|+|+.|+|+++..+.-
T Consensus 513 ak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 513 AKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred HHHhhccceecCceeehhhh
Confidence 99999999999999876643
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.4e-29 Score=237.49 Aligned_cols=176 Identities=27% Similarity=0.497 Sum_probs=155.0
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
..++|||+|||.++++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|+.|++.|+|..+.+....+.+.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998888999999999999999999999999999988777777776
Q ss_pred cccCCCCC------------------------------------------------------------------------
Q 015468 152 ATYGAGER------------------------------------------------------------------------ 159 (406)
Q Consensus 152 ~~~~~~~~------------------------------------------------------------------------ 159 (406)
+.......
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 64222000
Q ss_pred ---------------cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 015468 160 ---------------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLR 224 (406)
Q Consensus 160 ---------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 224 (406)
........+|||+|||.++++++|+++|++ ||.|.+++|+.|+.+++++|||||+|.+.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~-fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGP-FGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 000112336999999999999999999998 9999999999998899999999999999999999
Q ss_pred HHHHhcCcccCCcceEeCcCcccc
Q 015468 225 SMTEMNGVLCSTRPMRIGPAATKK 248 (406)
Q Consensus 225 a~~~l~g~~~~g~~i~v~~~~~~~ 248 (406)
|++.|||..+.|+.|+|.|...+.
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCC
Confidence 999999999999999999988764
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7.6e-30 Score=211.79 Aligned_cols=166 Identities=28% Similarity=0.543 Sum_probs=153.5
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceeccc
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~ 152 (406)
.--|||+.|...++.++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|+.||..|||..|. .+.|+.+|+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG--~R~IRTNWA 139 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG--RRTIRTNWA 139 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeec--cceeecccc
Confidence 456999999999999999999999999999999999999999999999999999999999999999994 688999999
Q ss_pred ccCCCCCc-----------CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHH
Q 015468 153 TYGAGERR-----------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 221 (406)
Q Consensus 153 ~~~~~~~~-----------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~ 221 (406)
..++.+.. ..+..+++||++|++.-+++++|++.|++ ||.|.+|++.++ +||+||.|.+.|+
T Consensus 140 TRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~-fG~I~EVRvFk~------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 140 TRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSP-FGPIQEVRVFKD------QGYAFVRFETKEA 212 (321)
T ss_pred ccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhccc-CCcceEEEEecc------cceEEEEecchhh
Confidence 87764322 34566889999999999999999999998 999999999998 7999999999999
Q ss_pred HHHHHHHhcCcccCCcceEeCcCccc
Q 015468 222 QLRSMTEMNGVLCSTRPMRIGPAATK 247 (406)
Q Consensus 222 a~~a~~~l~g~~~~g~~i~v~~~~~~ 247 (406)
|..||.++|+.+|.|..+++.|....
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccC
Confidence 99999999999999999999997654
No 24
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.97 E-value=2.5e-30 Score=235.29 Aligned_cols=278 Identities=17% Similarity=0.346 Sum_probs=216.8
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
..+...++||+--|+-.+++.+|++||+.+|.|.+|.|+.|+.+++++|.|||+|.|.+++-.|+. |.|..+.+..+.+
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 445667899999999999999999999999999999999999999999999999999999999996 9999998777777
Q ss_pred eecccccCC------CCC-cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHH
Q 015468 148 RLNWATYGA------GER-RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220 (406)
Q Consensus 148 ~~~~~~~~~------~~~-~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~ 220 (406)
...-+.... ... ..-..+-..|||+||.+++++++|+.+|++ ||.|+.|.+.+|..+|+++||+||+|.+.+
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifep-fg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEP-FGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccC-cccceeeeeccccccccccCcceEEEecHH
Confidence 665443221 111 111222223999999999999999999999 999999999999889999999999999999
Q ss_pred HHHHHHHHhcCcccCCcceEeCcCcccccccccc---cccc---------------------------------------
Q 015468 221 EQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ---YQKA--------------------------------------- 258 (406)
Q Consensus 221 ~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~---~~~~--------------------------------------- 258 (406)
+|.+|++.|||.++.|+.|+|.....+....... ....
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~ 411 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLL 411 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHh
Confidence 9999999999999999999986543322211100 0000
Q ss_pred --------ccCC-CCCCCCCC-------CCCCceEEEcCCCccCc----------HHHHHhhhccCCceEEEEeeCCC-c
Q 015468 259 --------TYQN-TQGSQGEN-------DPNNTTIFVGGLDPSVT----------DDILKTVFGQYGELVHVKIPAGK-R 311 (406)
Q Consensus 259 --------~~~~-~~~~~~~~-------~~~~~~l~v~~l~~~~~----------~~~l~~~f~~~G~v~~v~i~~~~-~ 311 (406)
.... ........ ...+.++.+.|+=+..+ .+|+.+.+++||.|.+|.+.++. |
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g 491 (549)
T KOG0147|consen 412 LAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAG 491 (549)
T ss_pred ccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCc
Confidence 0000 00000011 13455666777633222 27788899999999999998765 9
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccC
Q 015468 312 CGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347 (406)
Q Consensus 312 ~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 347 (406)
+.||.|.+.+.|..|+.+|||..|.|+.|+.+|-..
T Consensus 492 ~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 492 CVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred eEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 999999999999999999999999999999987653
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.4e-29 Score=221.70 Aligned_cols=172 Identities=25% Similarity=0.518 Sum_probs=152.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCC--cce
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CST--RPM 239 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~-~~g--~~i 239 (406)
+...-+|||+-||..++|.||+++|++ ||.|.+|.|++|+.++.++|||||.|.+.++|.+|+.+|+... +.| ..|
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~-yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEK-YGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHH-hCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 345568999999999999999999998 9999999999999999999999999999999999999998754 444 578
Q ss_pred EeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----CcEEE
Q 015468 240 RIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGF 314 (406)
Q Consensus 240 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-----~~~af 314 (406)
.|++++..+.+. ...++|||+-|+..++|++|+++|++||.|++|.|+++ |||||
T Consensus 110 qvk~Ad~E~er~--------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaF 169 (510)
T KOG0144|consen 110 QVKYADGERERI--------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAF 169 (510)
T ss_pred eecccchhhhcc--------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeE
Confidence 888888776543 23478999999999999999999999999999999986 89999
Q ss_pred EEeCCHHHHHHHHHHhCCce-eCC--ceeEEeeccCCCCCCCCC
Q 015468 315 VQFANRTCAEQALSVLNGTQ-LGG--QSIRLSWGRSPSNKQSDQ 355 (406)
Q Consensus 315 V~f~~~~~a~~a~~~l~~~~-~~g--~~l~v~~~~~~~~~~~~~ 355 (406)
|+|++.+.|..||++||+.. +.| ..|.|+||.+++.+...+
T Consensus 170 V~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 170 VKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred EEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 99999999999999999985 665 489999999988776543
No 26
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=4.3e-28 Score=226.65 Aligned_cols=259 Identities=21% Similarity=0.347 Sum_probs=205.5
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....+.|+|+|||..+..++|.++|..||.|..+.+.. .---|+|+|.+..+|..|++.|....+....+ .+
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~------~G~~aiv~fl~p~eAr~Afrklaysr~k~~pl--yl 453 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP------GGTGAIVEFLNPLEARKAFRKLAYSRFKSAPL--YL 453 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCc------ccceeeeeecCccchHHHHHHhchhhhccCcc--cc
Confidence 44557899999999999999999999999999885542 12359999999999999999888777643322 22
Q ss_pred cccccCCC----------------------C-----------CcC------------CCCCCceEEEcCCCCCCCHHHHH
Q 015468 150 NWATYGAG----------------------E-----------RRQ------------DDGPDFTIFVGDLAADVTDYVLQ 184 (406)
Q Consensus 150 ~~~~~~~~----------------------~-----------~~~------------~~~~~~~l~v~~l~~~~~~~~l~ 184 (406)
.|+....- . ... .....++|||.||+++++.++|.
T Consensus 454 e~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~ 533 (725)
T KOG0110|consen 454 EWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLE 533 (725)
T ss_pred ccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHH
Confidence 22211000 0 000 00112349999999999999999
Q ss_pred HHHHhhCCCccEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccccccccccccccccC
Q 015468 185 ETFRAVYSSVKGAKVVTDRTT---GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQ 261 (406)
Q Consensus 185 ~~f~~~~g~i~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~ 261 (406)
..|.. .|.|.++.|.+.+.. -.+.|||||+|.+.++|..|++.|+|+.++|..|.|.++..+.....
T Consensus 534 ~~F~k-~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~--------- 603 (725)
T KOG0110|consen 534 DLFSK-QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTV--------- 603 (725)
T ss_pred HHHHh-cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccc---------
Confidence 99998 999999988775422 13569999999999999999999999999999999999883222211
Q ss_pred CCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCcee
Q 015468 262 NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQL 335 (406)
Q Consensus 262 ~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~ 335 (406)
+........+++|+|.|||+.++..+|+.+|..||.|.+|+|+.. +|||||+|-+..+|..|+.+|..+.+
T Consensus 604 ---gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHl 680 (725)
T KOG0110|consen 604 ---GKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHL 680 (725)
T ss_pred ---ccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccce
Confidence 111222333689999999999999999999999999999999864 89999999999999999999999999
Q ss_pred CCceeEEeeccCCC
Q 015468 336 GGQSIRLSWGRSPS 349 (406)
Q Consensus 336 ~g~~l~v~~~~~~~ 349 (406)
.||+|.++||+...
T Consensus 681 yGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 681 YGRRLVLEWAKSDN 694 (725)
T ss_pred echhhheehhccch
Confidence 99999999998754
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.6e-28 Score=221.00 Aligned_cols=254 Identities=25% Similarity=0.393 Sum_probs=191.8
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceeccc
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~ 152 (406)
.-+|.|+|||+.+.+.+|..+|+.||.|.+|.|++. ..|+..|||||.|....+|..|++.+|+..|.++ .|-+.|+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR--~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGR--PVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCc--eeEEeee
Confidence 567999999999999999999999999999999976 4666779999999999999999999999999764 4445544
Q ss_pred ccCCC--------------------------------------------C--C---------------------------
Q 015468 153 TYGAG--------------------------------------------E--R--------------------------- 159 (406)
Q Consensus 153 ~~~~~--------------------------------------------~--~--------------------------- 159 (406)
-.... + .
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 31100 0 0
Q ss_pred ------------cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015468 160 ------------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (406)
Q Consensus 160 ------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 227 (406)
..+.....+|||+|||+++++++|.++|++ ||+|..+.++.++.|++++|.|||.|.+..+|..||+
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fsk-FG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSK-FGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHHh-hccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 000011368999999999999999999998 9999999999999999999999999999999999998
Q ss_pred Hh-----cC-cccCCcceEeCcCccccccccccccc---------ccc----------CCCCC-----------------
Q 015468 228 EM-----NG-VLCSTRPMRIGPAATKKAATGQQYQK---------ATY----------QNTQG----------------- 265 (406)
Q Consensus 228 ~l-----~g-~~~~g~~i~v~~~~~~~~~~~~~~~~---------~~~----------~~~~~----------------- 265 (406)
.. .+ ..+.||.|.|..+..+.....-.... .-+ .....
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k 432 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERK 432 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHH
Confidence 75 23 67899999999887755433210000 000 00000
Q ss_pred ----CCCCCCCCCceEEEcCCCccCcHHHHHhhhcc----C-CceEE-EEeeC---------CCcEEEEEeCCHHHHHHH
Q 015468 266 ----SQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ----Y-GELVH-VKIPA---------GKRCGFVQFANRTCAEQA 326 (406)
Q Consensus 266 ----~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~----~-G~v~~-v~i~~---------~~~~afV~f~~~~~a~~a 326 (406)
..+....+.++|.|.|||..++...|..+... | +.+.. ++.+. ..+++||.|..++.|.+|
T Consensus 433 ~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalka 512 (678)
T KOG0127|consen 433 RKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKA 512 (678)
T ss_pred HHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHh
Confidence 02233345577889999999999998887643 2 22222 23222 278999999999999999
Q ss_pred HHHh
Q 015468 327 LSVL 330 (406)
Q Consensus 327 ~~~l 330 (406)
+..+
T Consensus 513 lk~~ 516 (678)
T KOG0127|consen 513 LKVL 516 (678)
T ss_pred hhcc
Confidence 9865
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=4e-27 Score=228.33 Aligned_cols=175 Identities=27% Similarity=0.507 Sum_probs=150.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
....++|||+|||..+++++|+++|++ ||.|.+|.++.+..+++++|||||+|.+.++|.+|| .|++..+.|+.|.|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~-~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSK-VGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEe
Confidence 344679999999999999999999998 999999999999889999999999999999999999 589999999999998
Q ss_pred cCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEE
Q 015468 243 PAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQ 316 (406)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~ 316 (406)
++........... .......+..++|||+||+..+++++|+++|+.||.|..|.|..+ +++|||+
T Consensus 164 ~~~~~~~~~~~~~---------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~ 234 (457)
T TIGR01622 164 SSQAEKNRAAKAA---------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQ 234 (457)
T ss_pred ecchhhhhhhhcc---------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEE
Confidence 7654433221100 001111233689999999999999999999999999999998743 6899999
Q ss_pred eCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 317 FANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 317 f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
|.+.++|.+|+..|+|..|.|+.|.|.|+...
T Consensus 235 f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 235 FHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred ECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 99999999999999999999999999998743
No 29
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.95 E-value=1.2e-25 Score=202.35 Aligned_cols=269 Identities=18% Similarity=0.250 Sum_probs=188.9
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
..+...|-+++|||++|++||.+||+.++ |.++.+.+ .+|+..|-|||+|.+.|++++|++ ++...+. .+.|+|
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg--~RYIEV 80 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMG--HRYIEV 80 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhC--CceEEE
Confidence 45566799999999999999999999997 77877766 579999999999999999999998 5555553 344555
Q ss_pred cccccCCCCC------cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccE-EEEEecCCCCCcceEEEEEeCCHHHH
Q 015468 150 NWATYGAGER------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG-AKVVTDRTTGRSKGYGFVRFGDESEQ 222 (406)
Q Consensus 150 ~~~~~~~~~~------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a 222 (406)
-.+....... .........|.+++||+.|+++||.+||+. .-.|.. |.++.+ ..+++.|-|||.|++.+.|
T Consensus 81 f~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaG-L~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 81 FTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAG-LEIVPDGILLPMD-QRGRPTGEAFVQFESQESA 158 (510)
T ss_pred EccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcC-Ccccccceeeecc-CCCCcccceEEEecCHHHH
Confidence 4443222111 111234558999999999999999999997 555555 334455 4688999999999999999
Q ss_pred HHHHHHhcCcccCCcceEeCcCccccccccc----------------ccccc----------------------------
Q 015468 223 LRSMTEMNGVLCSTRPMRIGPAATKKAATGQ----------------QYQKA---------------------------- 258 (406)
Q Consensus 223 ~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~----------------~~~~~---------------------------- 258 (406)
+.|+.. |...|+.|-|.|..+.....+... ...+.
T Consensus 159 e~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~ 237 (510)
T KOG4211|consen 159 EIALGR-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFS 237 (510)
T ss_pred HHHHHH-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccc
Confidence 999954 566777777777654332111100 00000
Q ss_pred ------------cc------CCCC--CC--------CCCCCCCCceEEEcCCCccCcHHHHHhhhccCCce-EEEEeeCC
Q 015468 259 ------------TY------QNTQ--GS--------QGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL-VHVKIPAG 309 (406)
Q Consensus 259 ------------~~------~~~~--~~--------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v-~~v~i~~~ 309 (406)
.+ .... .. ..........++..+||+..++.+|.++|+..-.+ ..|.|-.+
T Consensus 238 ~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~d 317 (510)
T KOG4211|consen 238 RYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPD 317 (510)
T ss_pred cCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCC
Confidence 00 0000 00 00111222678889999999999999999876444 23444333
Q ss_pred ---CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 310 ---KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 310 ---~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
.+.|+|+|++.++|..|+.+ ++..+..+.|++......
T Consensus 318 Gr~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~~~ 358 (510)
T KOG4211|consen 318 GRATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGAP 358 (510)
T ss_pred CccCCcceeecccchhhHhhhcc-CCcccCcceeeecccCCc
Confidence 68899999999999999986 788888888888766544
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=6.8e-27 Score=193.06 Aligned_cols=167 Identities=26% Similarity=0.537 Sum_probs=152.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
+...+.|.|.-||..+|.|||+.+|.. .|+|++|++++|..+|.+-||+||.|.+++||++|+..|||..+..++|+|+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~S-iGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGS-IGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhc-ccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 444568999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEE
Q 015468 243 PAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQ 316 (406)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~ 316 (406)
++.+...... ...|||++||..+|..+|.++|+.||.|...+|..| ||.+||.
T Consensus 117 yARPSs~~Ik---------------------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiR 175 (360)
T KOG0145|consen 117 YARPSSDSIK---------------------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIR 175 (360)
T ss_pred eccCChhhhc---------------------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEE
Confidence 9988754432 367999999999999999999999999988877654 8999999
Q ss_pred eCCHHHHHHHHHHhCCceeCC--ceeEEeeccCCCCC
Q 015468 317 FANRTCAEQALSVLNGTQLGG--QSIRLSWGRSPSNK 351 (406)
Q Consensus 317 f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~~~ 351 (406)
|+..++|++||+.|||.+-.| ..|.|+|+..+..+
T Consensus 176 FDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 176 FDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred ecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccc
Confidence 999999999999999998766 48999999988654
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=1.8e-26 Score=180.85 Aligned_cols=174 Identities=25% Similarity=0.469 Sum_probs=151.0
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
-+...||||+||+..++++-|.++|-+.|+|.++++.+++.+...+|||||+|.++|+|+-|++.||...|- ++.+++
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY--grpIrv 83 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY--GRPIRV 83 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc--CceeEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999976675 455666
Q ss_pred cccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 015468 150 NWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG-AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (406)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 228 (406)
+.+.. .......+.+|||+||.+.+++..|.+.|+. ||.+.. -.++++..++.++|++||.|++.+.+.+|++.
T Consensus 84 ~kas~----~~~nl~vganlfvgNLd~~vDe~~L~dtFsa-fG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 84 NKASA----HQKNLDVGANLFVGNLDPEVDEKLLYDTFSA-FGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred Eeccc----ccccccccccccccccCcchhHHHHHHHHHh-ccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 55541 1122223368999999999999999999998 998765 47888888999999999999999999999999
Q ss_pred hcCcccCCcceEeCcCcccccc
Q 015468 229 MNGVLCSTRPMRIGPAATKKAA 250 (406)
Q Consensus 229 l~g~~~~g~~i~v~~~~~~~~~ 250 (406)
+++..+.++.++|.++..+...
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred hccchhcCCceEEEEEEecCCC
Confidence 9999999999999998765544
No 32
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5.4e-26 Score=201.58 Aligned_cols=173 Identities=20% Similarity=0.307 Sum_probs=155.1
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCC-eeEEEEEecCCC-CCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQT-NFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
...++|||+|||...++++|.+.|++.++ |++|.++.++.+ .++||||||+|.|...|.-|.++|-...|...+..+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 34678999999999999999999999988 889999887654 6789999999999999999999988877777889999
Q ss_pred ecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 015468 149 LNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (406)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 228 (406)
|.|+.+......+.....+.|||+||+.++|++.|+++|.. ||.|+.|+.++| ||||.|.+.++|.+||+.
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~-~G~veRVkk~rD--------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNE-FGKVERVKKPRD--------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHh-ccceEEeecccc--------eeEEeecchHHHHHHHHH
Confidence 99999877666666666778999999999999999999998 999999988866 999999999999999999
Q ss_pred hcCcccCCcceEeCcCcccccccc
Q 015468 229 MNGVLCSTRPMRIGPAATKKAATG 252 (406)
Q Consensus 229 l~g~~~~g~~i~v~~~~~~~~~~~ 252 (406)
+|+++|+|..|.|..+.+......
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred hcCceecCceEEEEecCChhhhcc
Confidence 999999999999999988665543
No 33
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.93 E-value=5e-24 Score=188.30 Aligned_cols=164 Identities=16% Similarity=0.275 Sum_probs=131.9
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhc-ccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFG-HTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
....|.+||.|||+++...+|++||. +.|+|+-|.++.| .+|+++|+|.|+|+++|.+++|++.|+...+.++.+.++
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 34456799999999999999999995 6789999999999 689999999999999999999999999999987766665
Q ss_pred ecccccC--------------------------------------CC-CCcC----------------------------
Q 015468 149 LNWATYG--------------------------------------AG-ERRQ---------------------------- 161 (406)
Q Consensus 149 ~~~~~~~--------------------------------------~~-~~~~---------------------------- 161 (406)
-...... .. ..++
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 4322100 00 0000
Q ss_pred -----------CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 015468 162 -----------DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230 (406)
Q Consensus 162 -----------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 230 (406)
......++||.||.+.+..+.|++.|.- -|.|+.|.+-.|+ .|.++|+|.++|...-+|..||..++
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgm-AGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGM-AGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhcc-ceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhc
Confidence 1122457899999999999999999985 8999999998885 57899999999999999999998888
Q ss_pred CcccCC
Q 015468 231 GVLCST 236 (406)
Q Consensus 231 g~~~~g 236 (406)
+.-+..
T Consensus 278 ~~g~~~ 283 (608)
T KOG4212|consen 278 RQGLFD 283 (608)
T ss_pred cCCCcc
Confidence 644333
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=3.8e-25 Score=173.49 Aligned_cols=165 Identities=30% Similarity=0.517 Sum_probs=146.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCc
Q 015468 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (406)
Q Consensus 166 ~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 245 (406)
..+|||+||+..++++.|+++|-+ .|+|.++.+.+|+.+....|||||+|.++|+|+-|++-||...+.|++|+|..+.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iq-agpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQ-AGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHh-cCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 449999999999999999999998 9999999999999999999999999999999999999999999999999999887
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEE-EeeCC------CcEEEEEeC
Q 015468 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV-KIPAG------KRCGFVQFA 318 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v-~i~~~------~~~afV~f~ 318 (406)
..... ...+.+|||+||.+.++|..|.+.|+.||.|... +|+++ ++++||.|+
T Consensus 88 ~~~~n--------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~ 147 (203)
T KOG0131|consen 88 AHQKN--------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYA 147 (203)
T ss_pred ccccc--------------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEech
Confidence 32211 1233779999999999999999999999988763 44442 679999999
Q ss_pred CHHHHHHHHHHhCCceeCCceeEEeeccCCCCC
Q 015468 319 NRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNK 351 (406)
Q Consensus 319 ~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 351 (406)
+.+.+.+|+..||+..++++.++|+++..+..+
T Consensus 148 sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 148 SFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred hHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 999999999999999999999999999976544
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=4.7e-24 Score=209.76 Aligned_cols=177 Identities=16% Similarity=0.271 Sum_probs=143.7
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....++|||+|||..+|+++|+++|+.||.|..+.|+++..+|.++|||||+|.+.++|..|++.|+|..|.+..+.|..
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45568999999999999999999999999999999999988999999999999999999999999999999766554443
Q ss_pred cccccCCCCC---------------------cCCCCCCceEEEcCCCCCC----------CHHHHHHHHHhhCCCccEEE
Q 015468 150 NWATYGAGER---------------------RQDDGPDFTIFVGDLAADV----------TDYVLQETFRAVYSSVKGAK 198 (406)
Q Consensus 150 ~~~~~~~~~~---------------------~~~~~~~~~l~v~~l~~~~----------~~~~l~~~f~~~~g~i~~~~ 198 (406)
.......... .....++.+|+|.|+.... ..++|+++|++ ||.|..|.
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~-~G~v~~v~ 450 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSK-YGPLINIV 450 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHh-cCCeeEEE
Confidence 3211110000 0012356688999986421 23679999998 99999999
Q ss_pred EEecC---CCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccc
Q 015468 199 VVTDR---TTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (406)
Q Consensus 199 ~~~~~---~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 247 (406)
|.++. .++...|++||+|.+.++|.+|+..|||..|.|+.|.+.|....
T Consensus 451 i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 451 IPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred eeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 98752 34566899999999999999999999999999999999987654
No 36
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=5e-25 Score=185.07 Aligned_cols=153 Identities=24% Similarity=0.478 Sum_probs=141.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccc
Q 015468 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (406)
Q Consensus 168 ~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 247 (406)
+|||+|||..+++.+|+.+|++ ||.|..|.|+++ |+||..++...|+.|+..|++..|.|..|.|+-+..+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~-ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQ-YGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHh-hCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 7999999999999999999998 999999999977 8999999999999999999999999999999988777
Q ss_pred cccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHH
Q 015468 248 KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQAL 327 (406)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~ 327 (406)
.+. +++|+|+||.+.++..+|++.|++||.|.+++|.++ ++||.|+-.++|..|+
T Consensus 75 sk~-----------------------stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--y~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 75 SKA-----------------------STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--YAFVHFDRAEDAVEAI 129 (346)
T ss_pred CCC-----------------------ccccccCCCCccccCHHHhhhhcccCCceeeeeecc--eeEEEEeeccchHHHH
Confidence 433 377999999999999999999999999999999965 9999999999999999
Q ss_pred HHhCCceeCCceeEEeeccCCCCCCCC
Q 015468 328 SVLNGTQLGGQSIRLSWGRSPSNKQSD 354 (406)
Q Consensus 328 ~~l~~~~~~g~~l~v~~~~~~~~~~~~ 354 (406)
+.|++++|.|++++|.++.++-+....
T Consensus 130 r~l~~~~~~gk~m~vq~stsrlrtapg 156 (346)
T KOG0109|consen 130 RGLDNTEFQGKRMHVQLSTSRLRTAPG 156 (346)
T ss_pred hcccccccccceeeeeeeccccccCCC
Confidence 999999999999999998877655433
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=2.7e-24 Score=180.70 Aligned_cols=149 Identities=21% Similarity=0.448 Sum_probs=133.7
Q ss_pred eEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceeccccc
Q 015468 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATY 154 (406)
Q Consensus 75 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~~ 154 (406)
+|||+|||..+++.+|+.+|++||+|.+|.|+++ |+||..++...|+.||+.|++..|++..+.|+ .++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVe--aSk- 72 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVE--ASK- 72 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEE--ecc-
Confidence 5999999999999999999999999999999864 99999999999999999999999976544444 333
Q ss_pred CCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 015468 155 GAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC 234 (406)
Q Consensus 155 ~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 234 (406)
+.+..+++|+|+||...++.+||+..|++ ||+|.++.|++| ++||.|+..++|..|++.|++.++
T Consensus 73 ------sKsk~stkl~vgNis~tctn~ElRa~fe~-ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 73 ------SKSKASTKLHVGNISPTCTNQELRAKFEK-YGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred ------ccCCCccccccCCCCccccCHHHhhhhcc-cCCceeeeeecc--------eeEEEEeeccchHHHHhccccccc
Confidence 22556679999999999999999999998 999999999876 899999999999999999999999
Q ss_pred CCcceEeCcCccccc
Q 015468 235 STRPMRIGPAATKKA 249 (406)
Q Consensus 235 ~g~~i~v~~~~~~~~ 249 (406)
.|+.++|..+..+-.
T Consensus 138 ~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRLR 152 (346)
T ss_pred ccceeeeeeeccccc
Confidence 999999998876543
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.90 E-value=3.5e-23 Score=183.09 Aligned_cols=176 Identities=23% Similarity=0.348 Sum_probs=148.0
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
+.++|||++|+|+++++.|+++|..||+|.+|.+++++.++++++|+||+|.+++...+++. .....|+ ++.|....
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~d--gr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLD--GRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccC--Ccccccee
Confidence 78999999999999999999999999999999999999999999999999999999999976 2233343 34444444
Q ss_pred cccCCCC-CcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 015468 152 ATYGAGE-RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230 (406)
Q Consensus 152 ~~~~~~~-~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 230 (406)
+.+.... .........++||++|+.+++++++++.|++ ||.|..+.++.|..+.+.+||+||.|.+++++++++ ...
T Consensus 82 av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~-~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~ 159 (311)
T KOG4205|consen 82 AVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQ-FGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQK 159 (311)
T ss_pred ccCcccccccccccceeEEEecCcCCCCchHHHhhhhhc-cceeEeeEEeecccccccccceeeEeccccccceec-ccc
Confidence 4332211 1122224668999999999999999999998 999999999999999999999999999999999988 567
Q ss_pred CcccCCcceEeCcCcccccccc
Q 015468 231 GVLCSTRPMRIGPAATKKAATG 252 (406)
Q Consensus 231 g~~~~g~~i~v~~~~~~~~~~~ 252 (406)
-+.|.++.+.|..+.++.....
T Consensus 160 f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred eeeecCceeeEeeccchhhccc
Confidence 7899999999999999876653
No 39
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.90 E-value=2.2e-23 Score=184.37 Aligned_cols=171 Identities=25% Similarity=0.412 Sum_probs=150.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++|||++|+|+++++.|++.|.+ ||+|.++.+++|+.+++++||+||+|++.+...+++ ....+.|+++.|.+..+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~-~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQ-FGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcc-cCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceec
Confidence 5569999999999999999999998 999999999999999999999999999999988888 44668899999999988
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeC
Q 015468 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFA 318 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~ 318 (406)
.++...... .......+|||++|+.++++++|+++|++||.|.++.++.+ ++|+||+|.
T Consensus 83 v~r~~~~~~---------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~ 147 (311)
T KOG4205|consen 83 VSREDQTKV---------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFD 147 (311)
T ss_pred cCccccccc---------------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEec
Confidence 887654432 11225679999999999999999999999999999988754 789999999
Q ss_pred CHHHHHHHHHHhCCceeCCceeEEeeccCCCCCCC
Q 015468 319 NRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQS 353 (406)
Q Consensus 319 ~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 353 (406)
+.+++.+++. ..-+.|+++.++|..|.++.....
T Consensus 148 ~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 148 SEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred cccccceecc-cceeeecCceeeEeeccchhhccc
Confidence 9998888887 588999999999999998876543
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=8.4e-24 Score=182.86 Aligned_cols=171 Identities=23% Similarity=0.484 Sum_probs=147.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccc
Q 015468 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (406)
Q Consensus 168 ~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 247 (406)
+|||+.+.+++.++.|+..|.+ ||+|++|.+-.|+.|++.+||+||+|+-.|.|..|++.||+..++||.|+|......
T Consensus 115 RvYVGSIsfEl~EDtiR~AF~P-FGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 115 RVYVGSISFELREDTIRRAFDP-FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred heeeeeeEEEechHHHHhhccC-CCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 7999999999999999999999 999999999999999999999999999999999999999999999999999865543
Q ss_pred cccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHH
Q 015468 248 KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRT 321 (406)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~ 321 (406)
.....-.. ...+....-.+|||..+..+++++||+.+|+.||+|.+|.+.++ |||+||+|++..
T Consensus 194 pQAQpiID----------~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~q 263 (544)
T KOG0124|consen 194 PQAQPIID----------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 263 (544)
T ss_pred cccchHHH----------HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecccc
Confidence 22111000 00011122367999999999999999999999999999999764 899999999999
Q ss_pred HHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 322 CAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 322 ~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
+...|+..||-..++|..|+|-.+..+.
T Consensus 264 s~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 264 SQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred chHHHhhhcchhhcccceEecccccCCC
Confidence 9999999999999999999998776554
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.3e-22 Score=166.98 Aligned_cols=178 Identities=25% Similarity=0.451 Sum_probs=151.7
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCC-CCCCCccce
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQ-MPSTEQNFR 148 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~-~~~~~~~v~ 148 (406)
..+.++|||+-|...-.|||++.+|..||.|++|.+.+. .+|.+||+|||+|.+..+|..||..|+|.. +.+....+.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 447789999999999999999999999999999999998 588899999999999999999999999964 555555555
Q ss_pred ecccccCCC-----------------------------------------------------------------------
Q 015468 149 LNWATYGAG----------------------------------------------------------------------- 157 (406)
Q Consensus 149 ~~~~~~~~~----------------------------------------------------------------------- 157 (406)
|+++..+..
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 543331100
Q ss_pred --------------------------------------------------------------------------------
Q 015468 158 -------------------------------------------------------------------------------- 157 (406)
Q Consensus 158 -------------------------------------------------------------------------------- 157 (406)
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence
Q ss_pred ----------------------CCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEE
Q 015468 158 ----------------------ERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVR 215 (406)
Q Consensus 158 ----------------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~ 215 (406)
.....-.+.++|||..||.+..+.||...|.+ ||.|.+.++..|+.|+.+|.|+||.
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~P-FGhivSaKVFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLP-FGHIVSAKVFVDRATNQSKCFGFVS 333 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcc-ccceeeeeeeehhccccccceeeEe
Confidence 00001123789999999999999999999999 9999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhcCcccCCcceEeCcCccccc
Q 015468 216 FGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249 (406)
Q Consensus 216 f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~ 249 (406)
|++..+|..||..|||..|+=+.|+|....++..
T Consensus 334 fDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred cCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9999999999999999999999999887766543
No 42
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.88 E-value=3.6e-21 Score=169.11 Aligned_cols=269 Identities=17% Similarity=0.253 Sum_probs=188.9
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
...++.|.+||||++++|+||..++..||.|+.+.+.+. +..||++|.|.++|...+.......-.-++..+-+
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeecc------chhhhhhhcchhhhhheeecccccCccccCcceee
Confidence 447889999999999999999999999999999998875 44899999999999884433222221111222211
Q ss_pred ccccc------------------------CC------C-----CCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCc
Q 015468 150 NWATY------------------------GA------G-----ERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194 (406)
Q Consensus 150 ~~~~~------------------------~~------~-----~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i 194 (406)
.++.. .. . ........--+++|.++-+.++-|-|..+|++ ||.|
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~-fG~V 177 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSK-FGFV 177 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhh-ccee
Confidence 11110 00 0 00011112335789999999999999999998 9999
Q ss_pred cEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCC--cceEeCcCcccccccc----------ccccccc---
Q 015468 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST--RPMRIGPAATKKAATG----------QQYQKAT--- 259 (406)
Q Consensus 195 ~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~~~~~~~~~~----------~~~~~~~--- 259 (406)
..|.-.... . .=.|+|.|.+.+.|..|...|+|..|.+ ..|+++++........ .......
T Consensus 178 lKIiTF~Kn-n---~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 178 LKIITFTKN-N---GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred EEEEEEecc-c---chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 888665542 1 1248899999999999999999988753 4666666543211111 0000000
Q ss_pred ---------------------------cCCCCCCCCCCCC--CCceEEEcCCCcc-CcHHHHHhhhccCCceEEEEeeCC
Q 015468 260 ---------------------------YQNTQGSQGENDP--NNTTIFVGGLDPS-VTDDILKTVFGQYGELVHVKIPAG 309 (406)
Q Consensus 260 ---------------------------~~~~~~~~~~~~~--~~~~l~v~~l~~~-~~~~~l~~~f~~~G~v~~v~i~~~ 309 (406)
............. .+.+|.|.||..+ +|.+.|..+|+-||.|.+|+|+.+
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n 333 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN 333 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec
Confidence 0000000001111 2578889998765 899999999999999999999876
Q ss_pred C-cEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 310 K-RCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 310 ~-~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
+ .-|+|.+.|...|.-|+..|+|..+.|+.|+|.+++-..
T Consensus 334 kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 334 KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 4 579999999999999999999999999999999988543
No 43
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=3.1e-21 Score=178.78 Aligned_cols=274 Identities=19% Similarity=0.323 Sum_probs=202.4
Q ss_pred CCCCCCCCceEEEeCCCCCcCHHHHHHHhccc-----------CC-eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHH
Q 015468 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHT-----------GE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133 (406)
Q Consensus 66 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-----------G~-v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 133 (406)
........+.++|+++|+.++++.+..+|..- |. +..+.+-. .+.|||++|.+.++|..|+.
T Consensus 168 ~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~~ 241 (500)
T KOG0120|consen 168 DSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAMA 241 (500)
T ss_pred CcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhhc
Confidence 33446677899999999999999999999754 22 44555443 57899999999999999997
Q ss_pred HhCCCCCCCCCccceecccccCC----------------CCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEE
Q 015468 134 TFNGTQMPSTEQNFRLNWATYGA----------------GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGA 197 (406)
Q Consensus 134 ~l~~~~~~~~~~~v~~~~~~~~~----------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~ 197 (406)
+++..+.+....+......... ............++|++||..++++.+++++.. ||.+...
T Consensus 242 -~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~-fg~lk~f 319 (500)
T KOG0120|consen 242 -LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDS-FGPLKAF 319 (500)
T ss_pred -ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHh-cccchhh
Confidence 7777776655444433222111 011122334557999999999999999999997 9999999
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccccccccccccccc--cCCCCC-CCCCCCCCC
Q 015468 198 KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKAT--YQNTQG-SQGENDPNN 274 (406)
Q Consensus 198 ~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~ 274 (406)
.+..+..+|.++||||.+|.+......|++.|||..++++.|.|..+-.............. ...... .........
T Consensus 320 ~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t 399 (500)
T KOG0120|consen 320 RLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPT 399 (500)
T ss_pred eeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcc
Confidence 99999989999999999999999999999999999999999999887665444332222000 000000 012233344
Q ss_pred ceEEEcCCCc--cC-cH-------HHHHhhhccCCceEEEEeeCC---------CcEEEEEeCCHHHHHHHHHHhCCcee
Q 015468 275 TTIFVGGLDP--SV-TD-------DILKTVFGQYGELVHVKIPAG---------KRCGFVQFANRTCAEQALSVLNGTQL 335 (406)
Q Consensus 275 ~~l~v~~l~~--~~-~~-------~~l~~~f~~~G~v~~v~i~~~---------~~~afV~f~~~~~a~~a~~~l~~~~~ 335 (406)
.+|.+.|+=. ++ ++ |+++..+++||.|.+|.|++. -|..||+|.+.+++.+|+++|+|..|
T Consensus 400 ~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF 479 (500)
T KOG0120|consen 400 EVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF 479 (500)
T ss_pred hhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence 4455544411 11 11 556777899999999999875 46789999999999999999999999
Q ss_pred CCceeEEeeccC
Q 015468 336 GGQSIRLSWGRS 347 (406)
Q Consensus 336 ~g~~l~v~~~~~ 347 (406)
.||+|..+|-..
T Consensus 480 ~nRtVvtsYyde 491 (500)
T KOG0120|consen 480 ANRTVVASYYDE 491 (500)
T ss_pred CCcEEEEEecCH
Confidence 999999887653
No 44
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.87 E-value=3.4e-20 Score=163.02 Aligned_cols=269 Identities=17% Similarity=0.280 Sum_probs=205.9
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.....-+++|.|+-+.++-|-|..+|++||.|..|.-.... ..--|.|.|.+.+.|..|...|+|..|.+.-.+++
T Consensus 146 ~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLr 221 (492)
T KOG1190|consen 146 GPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLR 221 (492)
T ss_pred CCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEE
Confidence 34455678999999999999999999999999887766532 23348999999999999999999999877666666
Q ss_pred ecccccCC----------------CCC----------------------------------------cCCCCC--CceEE
Q 015468 149 LNWATYGA----------------GER----------------------------------------RQDDGP--DFTIF 170 (406)
Q Consensus 149 ~~~~~~~~----------------~~~----------------------------------------~~~~~~--~~~l~ 170 (406)
+.++.... ..+ .....+ +..|.
T Consensus 222 Id~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vll 301 (492)
T KOG1190|consen 222 IDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLL 301 (492)
T ss_pred eehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEE
Confidence 55443110 000 000111 46778
Q ss_pred EcCCC-CCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccccc
Q 015468 171 VGDLA-ADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249 (406)
Q Consensus 171 v~~l~-~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~ 249 (406)
|.||. ..+|.+.|..+|.- ||+|.+|+|+.+. +-.|+|.|.|...|..|++.|+|..+.|+.|+|.++.....
T Consensus 302 vsnln~~~VT~d~LftlFgv-YGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 302 VSNLNEEAVTPDVLFTLFGV-YGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred EecCchhccchhHHHHHHhh-hcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 88886 56899999999995 9999999999874 35799999999999999999999999999999999876544
Q ss_pred ccccccccc-----ccCCCCC---------CCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEE-Ee-eCCCcEE
Q 015468 250 ATGQQYQKA-----TYQNTQG---------SQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV-KI-PAGKRCG 313 (406)
Q Consensus 250 ~~~~~~~~~-----~~~~~~~---------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v-~i-~~~~~~a 313 (406)
......... .+..... .-....+++.+|.+.|+|.+++||+|++.|..-|...+. +. .+++..|
T Consensus 376 qlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kma 455 (492)
T KOG1190|consen 376 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMA 455 (492)
T ss_pred cCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCccee
Confidence 433322211 0110000 011234677899999999999999999999888766443 33 4578999
Q ss_pred EEEeCCHHHHHHHHHHhCCceeCCc-eeEEeeccC
Q 015468 314 FVQFANRTCAEQALSVLNGTQLGGQ-SIRLSWGRS 347 (406)
Q Consensus 314 fV~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~~~~ 347 (406)
++.++++|+|..|+..++++.+++. .|+|+|++.
T Consensus 456 l~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 456 LPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999999999999999999998864 999999875
No 45
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=4.6e-22 Score=165.24 Aligned_cols=185 Identities=24% Similarity=0.420 Sum_probs=152.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc-C--CcceE
Q 015468 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC-S--TRPMR 240 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~-~--g~~i~ 240 (406)
...++|||+.|.+.-+|||++.+|.. ||+|++|.+++.. +|.+||++||.|.+..+|..||..|+|... - ...|.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~p-fG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQP-FGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcc-cCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 35569999999999999999999998 9999999999984 789999999999999999999999999653 2 46788
Q ss_pred eCcCcccccccccccccc--------------------------------------------------------------
Q 015468 241 IGPAATKKAATGQQYQKA-------------------------------------------------------------- 258 (406)
Q Consensus 241 v~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 258 (406)
|++++..+++..+.....
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 999888666543320000
Q ss_pred ccCCCCC-----------------------C-------------------------------------------------
Q 015468 259 TYQNTQG-----------------------S------------------------------------------------- 266 (406)
Q Consensus 259 ~~~~~~~-----------------------~------------------------------------------------- 266 (406)
...+... .
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence 0000000 0
Q ss_pred -----------------------CCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEe
Q 015468 267 -----------------------QGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQF 317 (406)
Q Consensus 267 -----------------------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f 317 (406)
.....+.+|.|||-.||.+..+.||...|-.||.|++.+++.| |.|+||.|
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEec
Confidence 1134467899999999999999999999999999999888654 78999999
Q ss_pred CCHHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 318 ANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 318 ~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
+++.+|..||.+|||..|+-++|+|.+.+++..
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 999999999999999999999999999988754
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=1.1e-21 Score=184.02 Aligned_cols=174 Identities=18% Similarity=0.354 Sum_probs=146.3
Q ss_pred eEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCC---CCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT---NFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 75 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
+|||+||++++|.++|..+|...|.|.++.|...+.. -.+.|||||+|.+.++|.+|++.|+|+.|.+..+.+++..
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999988765321 1245999999999999999999999999988777766665
Q ss_pred cccCCC--CCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 015468 152 ATYGAG--ERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM 229 (406)
Q Consensus 152 ~~~~~~--~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 229 (406)
...... .........++|+|+|||+.++..+++++|.. ||.|.+|+|......+..+|||||+|-+..+|..|+++|
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~a-FGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTA-FGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhc-ccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 221111 11222333568999999999999999999998 999999999987556678999999999999999999999
Q ss_pred cCcccCCcceEeCcCccccc
Q 015468 230 NGVLCSTRPMRIGPAATKKA 249 (406)
Q Consensus 230 ~g~~~~g~~i~v~~~~~~~~ 249 (406)
..+-+.||.|.++|+.....
T Consensus 676 ~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cccceechhhheehhccchH
Confidence 99999999999999977543
No 47
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=2.7e-19 Score=143.14 Aligned_cols=80 Identities=29% Similarity=0.565 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
...+++|||+||++++++++|+++|++||.|++|.|+.+ ++||||+|++.++|.+|++.||+..|+|+.|+|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345678999999999999999999999999999999754 78999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015468 345 GRSPSN 350 (406)
Q Consensus 345 ~~~~~~ 350 (406)
++.+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 987544
No 48
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.82 E-value=4.6e-18 Score=147.95 Aligned_cols=270 Identities=16% Similarity=0.179 Sum_probs=202.3
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
....+..|.|++|-..++|.+|.+.++.||.|.-+..+. .+..|.|+|+|.+.|+.++...-...+.......-
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P------~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP------HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecc------ccceeeeeeccccchhhheehhccCcccccCchhh
Confidence 345567899999999999999999999999997777765 46789999999999999997444444444444445
Q ss_pred ecccccCCCCCc--CCCCCCceEE--EcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 015468 149 LNWATYGAGERR--QDDGPDFTIF--VGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLR 224 (406)
Q Consensus 149 ~~~~~~~~~~~~--~~~~~~~~l~--v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 224 (406)
+++++.....+. +...++..|. |-|--+.+|.+-|..+..+ .|.|..|.|++.. --.|.|+|++.+.|.+
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp-~GkVlRIvIfkkn-----gVQAmVEFdsv~~Aqr 174 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNP-QGKVLRIVIFKKN-----GVQAMVEFDSVEVAQR 174 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCC-CCceEEEEEEecc-----ceeeEEeechhHHHHH
Confidence 555543333322 2223333443 4455578999999999998 9999999998762 4579999999999999
Q ss_pred HHHHhcCcccC--CcceEeCcCcccccccccccccc----------------------------------------ccCC
Q 015468 225 SMTEMNGVLCS--TRPMRIGPAATKKAATGQQYQKA----------------------------------------TYQN 262 (406)
Q Consensus 225 a~~~l~g~~~~--g~~i~v~~~~~~~~~~~~~~~~~----------------------------------------~~~~ 262 (406)
|.++|||-.|. -.+|+|+++.+.+....+..... .+..
T Consensus 175 Ak~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~s 254 (494)
T KOG1456|consen 175 AKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYS 254 (494)
T ss_pred HHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcc
Confidence 99999997764 46888988887544332210000 0000
Q ss_pred ---------------------CCCCCCCCCCCCceEEEcCCCcc-CcHHHHHhhhccCCceEEEEeeCC-CcEEEEEeCC
Q 015468 263 ---------------------TQGSQGENDPNNTTIFVGGLDPS-VTDDILKTVFGQYGELVHVKIPAG-KRCGFVQFAN 319 (406)
Q Consensus 263 ---------------------~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~v~~v~i~~~-~~~afV~f~~ 319 (406)
.....+.....++++.|.+|... ++-+.|.++|-.||.|++|++++. .+.|.|++.|
T Consensus 255 g~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd 334 (494)
T KOG1456|consen 255 GDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGD 334 (494)
T ss_pred cccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCc
Confidence 00001134456789999999876 677889999999999999999886 5899999999
Q ss_pred HHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 320 RTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 320 ~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
..+.++|+..||+..+-|.+|.|..++...-
T Consensus 335 ~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 335 AYAVERAVTHLNNIPLFGGKLNVCVSKQNFV 365 (494)
T ss_pred HHHHHHHHHHhccCccccceEEEeecccccc
Confidence 9999999999999999999999998886543
No 49
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.81 E-value=3.4e-20 Score=169.57 Aligned_cols=176 Identities=27% Similarity=0.446 Sum_probs=147.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..+++|+--|+..++.-+|.++|+. +|.|.+|.++.|+.+++++|.|||+|.|.+....|+ .|.|..+.|.+|.|...
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~-~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSI-VGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHh-hcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 3457888888888999999999997 999999999999999999999999999999999999 89999999999999887
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeC
Q 015468 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFA 318 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~ 318 (406)
...+..... ...+........+. ..|||+||.+++++++|+.+|+.||.|+.|.+.++ +||+||+|.
T Consensus 256 Eaeknr~a~------~s~a~~~k~~~~p~-~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 256 EAEKNRAAN------ASPALQGKGFTGPM-RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred HHHHHHHHh------ccccccccccccch-hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe
Confidence 665544211 11111111112222 22999999999999999999999999999998765 799999999
Q ss_pred CHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 319 NRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 319 ~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
+.++|.+|+..|||.+|.|+.|+|......-
T Consensus 329 ~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 329 NKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred cHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 9999999999999999999999998765443
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=8.2e-19 Score=138.07 Aligned_cols=154 Identities=16% Similarity=0.249 Sum_probs=125.8
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
...+++|||+|||.++.+.||+++|-+||.|.+|.+...+. ..+||||+|+++.+|+.||..-+|..+.+..+.|++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g---~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG---PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC---CCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 46679999999999999999999999999999999876432 578999999999999999999999999877666666
Q ss_pred cccccCCCCC-------------------cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcce
Q 015468 150 NWATYGAGER-------------------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKG 210 (406)
Q Consensus 150 ~~~~~~~~~~-------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g 210 (406)
.......... ...-.....|.|.+||.+.+..||++++.+ -|.|-...+.+| |
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRe-aGdvCfadv~rD-------g 151 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMRE-AGDVCFADVQRD-------G 151 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHh-hCCeeeeeeecc-------c
Confidence 5433211110 011223457999999999999999999998 899887777776 4
Q ss_pred EEEEEeCCHHHHHHHHHHhcCccc
Q 015468 211 YGFVRFGDESEQLRSMTEMNGVLC 234 (406)
Q Consensus 211 ~~fv~f~~~~~a~~a~~~l~g~~~ 234 (406)
.+.|+|...|+.+-|+..|+...+
T Consensus 152 ~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ceeeeeeehhhHHHHHHhhccccc
Confidence 899999999999999998876554
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=4.3e-18 Score=134.08 Aligned_cols=168 Identities=15% Similarity=0.260 Sum_probs=134.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++|||+|||.++-+.+|.++|.+ ||.|..|.+...+ ....||||+|++..+|+.||..-+|..++|..|+|+++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyK-yg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYK-YGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhh-hcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 3568999999999999999999998 9999999886543 35679999999999999999999999999999999998
Q ss_pred cccccccccccccccc-----CCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC
Q 015468 245 ATKKAATGQQYQKATY-----QNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN 319 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~ 319 (406)
..-............. .......+........|.|.+||.+.++.||+++..+-|.|+...+.++ +.+.|+|..
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r 159 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLR 159 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeeee
Confidence 7654222111100000 0001111233345578999999999999999999999999999998876 589999999
Q ss_pred HHHHHHHHHHhCCceeCC
Q 015468 320 RTCAEQALSVLNGTQLGG 337 (406)
Q Consensus 320 ~~~a~~a~~~l~~~~~~g 337 (406)
.|+.+-|+..|....+..
T Consensus 160 ~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 160 KEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred hhhHHHHHHhhccccccC
Confidence 999999999998887654
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.78 E-value=1.1e-17 Score=137.30 Aligned_cols=178 Identities=19% Similarity=0.363 Sum_probs=144.8
Q ss_pred CCceEEEcCCCCCCCHHHHHH----HHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 165 PDFTIFVGDLAADVTDYVLQE----TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~----~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
++.+|||.||+..+..++|++ +|+. ||.|.+|...+ +.+.+|-|||.|.+.+.|..|+++|+|..+.|+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsq-fG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQ-FGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHh-hCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 344999999999999999988 9998 99999998875 467899999999999999999999999999999999
Q ss_pred eCcCcccccccccccc-------c------c---ccCCC---------CCC----CCCCCCCCceEEEcCCCccCcHHHH
Q 015468 241 IGPAATKKAATGQQYQ-------K------A---TYQNT---------QGS----QGENDPNNTTIFVGGLDPSVTDDIL 291 (406)
Q Consensus 241 v~~~~~~~~~~~~~~~-------~------~---~~~~~---------~~~----~~~~~~~~~~l~v~~l~~~~~~~~l 291 (406)
+.|+..+.....+... + . ..... ... .....++...+|+.|||..++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 9998775444332110 0 0 00000 000 0233667889999999999999999
Q ss_pred HhhhccCCceEEEEeeCC-CcEEEEEeCCHHHHHHHHHHhCCceeC-CceeEEeecc
Q 015468 292 KTVFGQYGELVHVKIPAG-KRCGFVQFANRTCAEQALSVLNGTQLG-GQSIRLSWGR 346 (406)
Q Consensus 292 ~~~f~~~G~v~~v~i~~~-~~~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 346 (406)
..+|..|.....|+++.. ++.|||+|.+...|..|...+.+..|- ...+.|.+++
T Consensus 164 ~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999988775 789999999999999999999998886 7888888875
No 53
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.77 E-value=2.7e-16 Score=137.05 Aligned_cols=266 Identities=18% Similarity=0.228 Sum_probs=196.9
Q ss_pred CCceEEEeCCC--CCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 72 GIRSLWIGDLQ--PWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 72 ~~~~l~V~nLp--~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....|.+.=|. +.+|-+-|..++...|.|..|.|++. + --.|.|||++.+.|.+|.+.|||..|-..-.++++
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 34455555444 56999999999999999999999984 2 34699999999999999999999988766666666
Q ss_pred cccccCCC----------------C-------------------------------------------------------
Q 015468 150 NWATYGAG----------------E------------------------------------------------------- 158 (406)
Q Consensus 150 ~~~~~~~~----------------~------------------------------------------------------- 158 (406)
+++++... .
T Consensus 194 eyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~ 273 (494)
T KOG1456|consen 194 EYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYR 273 (494)
T ss_pred EecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccc
Confidence 65553210 0
Q ss_pred ------CcCCCCCCceEEEcCCCC-CCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 015468 159 ------RRQDDGPDFTIFVGDLAA-DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (406)
Q Consensus 159 ------~~~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 231 (406)
......+.+.+.|.+|.. .++-+.|..+|.. ||.|+.|++++.. .|.|.|++.|..+.++|+..||+
T Consensus 274 ~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~Cl-YGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn 347 (494)
T KOG1456|consen 274 DGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCL-YGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNN 347 (494)
T ss_pred cCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhh-cCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhcc
Confidence 000112356788999985 4677889999996 9999999999874 67899999999999999999999
Q ss_pred cccCCcceEeCcCccccccccccccc----ccc------------CCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhh
Q 015468 232 VLCSTRPMRIGPAATKKAATGQQYQK----ATY------------QNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVF 295 (406)
Q Consensus 232 ~~~~g~~i~v~~~~~~~~~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f 295 (406)
..+.|.+|.|..+............- .++ .+...+....-+++++|..-|.|..+||+.|.++|
T Consensus 348 ~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~ 427 (494)
T KOG1456|consen 348 IPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGIC 427 (494)
T ss_pred CccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHh
Confidence 99999999998776543332211100 000 01111233445678899999999999999999999
Q ss_pred ccCCc-eEEEEeeCCC----cEEEEEeCCHHHHHHHHHHhCCceeCCc------eeEEeeccCC
Q 015468 296 GQYGE-LVHVKIPAGK----RCGFVQFANRTCAEQALSVLNGTQLGGQ------SIRLSWGRSP 348 (406)
Q Consensus 296 ~~~G~-v~~v~i~~~~----~~afV~f~~~~~a~~a~~~l~~~~~~g~------~l~v~~~~~~ 348 (406)
...+. -.+|+|+..| ..+.++|++.++|..||..+|...|.+. .|++-|+.++
T Consensus 428 nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 428 NEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred hhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 76553 3566666542 4689999999999999999999988764 4555555543
No 54
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.77 E-value=2.5e-17 Score=135.22 Aligned_cols=165 Identities=17% Similarity=0.310 Sum_probs=134.0
Q ss_pred CCceEEEeCCCCCcCHHHHHH----HhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 72 GIRSLWIGDLQPWMEESYIAS----IFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~----~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
...||||.||+..+..++|+. +|+.||.|.+|...+ +.+.+|-|||.|++.+.|..|++.|+|..+.+....+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999888 999999999999886 4558999999999999999999999999997665554
Q ss_pred eecccccCCCCC-------------------------------------------cCCCCCCceEEEcCCCCCCCHHHHH
Q 015468 148 RLNWATYGAGER-------------------------------------------RQDDGPDFTIFVGDLAADVTDYVLQ 184 (406)
Q Consensus 148 ~~~~~~~~~~~~-------------------------------------------~~~~~~~~~l~v~~l~~~~~~~~l~ 184 (406)
.......+.... .....++..||+.|||.+++.+.+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 433222111000 1114456789999999999999999
Q ss_pred HHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC-CcceEeCcCc
Q 015468 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS-TRPMRIGPAA 245 (406)
Q Consensus 185 ~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-g~~i~v~~~~ 245 (406)
.+|.. |...+.++++... .+.|||+|.+...|..|...+.+..|. ...+.+.++.
T Consensus 165 ~lf~q-f~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQ-FPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhh-CcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99998 9999999998764 679999999999999999999987776 6667766653
No 55
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.77 E-value=2.2e-17 Score=134.07 Aligned_cols=163 Identities=18% Similarity=0.304 Sum_probs=122.2
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEe-cCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC-Cc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR-NKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST-EQ 145 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~-~~ 145 (406)
......|||||.+||.|+...||+.+|..|--.+.+.+.. ++....++.+|||.|.+..+|.+|+..|||..|+.. ..
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 3456689999999999999999999999998787777754 333334568999999999999999999999988643 23
Q ss_pred cceecccccCC--CCCc---------------------------------------------------------------
Q 015468 146 NFRLNWATYGA--GERR--------------------------------------------------------------- 160 (406)
Q Consensus 146 ~v~~~~~~~~~--~~~~--------------------------------------------------------------- 160 (406)
+++++.++... ..++
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 33333322110 0000
Q ss_pred ----------------CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 015468 161 ----------------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLR 224 (406)
Q Consensus 161 ----------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 224 (406)
.......+|||.||..+++|++|+.+|+. |.....++|... .| ...+|++|++.+.|..
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~-~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~ 263 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSR-YPGFHILKIRAR--GG--MPVAFADFEEIEQATD 263 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHh-CCCceEEEEecC--CC--cceEeecHHHHHHHHH
Confidence 00012458999999999999999999998 888776666543 12 3479999999999999
Q ss_pred HHHHhcCcccC
Q 015468 225 SMTEMNGVLCS 235 (406)
Q Consensus 225 a~~~l~g~~~~ 235 (406)
||..|.|..+.
T Consensus 264 am~~lqg~~~s 274 (284)
T KOG1457|consen 264 AMNHLQGNLLS 274 (284)
T ss_pred HHHHhhcceec
Confidence 99999987763
No 56
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.75 E-value=1.5e-17 Score=145.32 Aligned_cols=273 Identities=15% Similarity=0.134 Sum_probs=184.5
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
.+....|..++|||..++.+|..||...-...-...+.....|+..|.+.|.|.|.|.-+.|++. +...+. .+.+.+
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g--~ryiev 133 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMG--TRYIEV 133 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhcc--CCceee
Confidence 44556688899999999999999998765444445555556788889999999999999999873 333332 223333
Q ss_pred cccccC---------CCCC--cCCCCCCceEEEcCCCCCCCHHHHHHHHHh---hCCCccEEEEEecCCCCCcceEEEEE
Q 015468 150 NWATYG---------AGER--RQDDGPDFTIFVGDLAADVTDYVLQETFRA---VYSSVKGAKVVTDRTTGRSKGYGFVR 215 (406)
Q Consensus 150 ~~~~~~---------~~~~--~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~---~~g~i~~~~~~~~~~~~~~~g~~fv~ 215 (406)
-.+..+ ..+. ......---|.+++||+++++.++.+||.+ +-+..+.|.+++. .+|+..|-|||.
T Consensus 134 Yka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvl 212 (508)
T KOG1365|consen 134 YKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVL 212 (508)
T ss_pred eccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEE
Confidence 222211 1111 111112235788999999999999999953 2345566666665 479999999999
Q ss_pred eCCHHHHHHHHHHhcCcccCCcceEeCcCccccccccccccc---ccc--CCC-----CCCCCCCCCCCceEEEcCCCcc
Q 015468 216 FGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQK---ATY--QNT-----QGSQGENDPNNTTIFVGGLDPS 285 (406)
Q Consensus 216 f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~---~~~--~~~-----~~~~~~~~~~~~~l~v~~l~~~ 285 (406)
|..+++|..|+.+ |...++-|.|.+..+........-.... -.. ... ............+|.+.+||+.
T Consensus 213 fa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~ 291 (508)
T KOG1365|consen 213 FACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYE 291 (508)
T ss_pred ecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChh
Confidence 9999999999955 5566777777776654422211110000 000 000 0001112223567999999999
Q ss_pred CcHHHHHhhhccCCceEE---EEeeC-----CCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccC
Q 015468 286 VTDDILKTVFGQYGELVH---VKIPA-----GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347 (406)
Q Consensus 286 ~~~~~l~~~f~~~G~v~~---v~i~~-----~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 347 (406)
.+.++|.++|..|..-++ |.+.- ..|.|||+|.+.+.|..|..+.+++.+..|.|+|--+..
T Consensus 292 AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 292 ATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred hhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 999999999998864322 44332 268899999999999999998888888899999976653
No 57
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.75 E-value=1.9e-16 Score=143.33 Aligned_cols=165 Identities=18% Similarity=0.266 Sum_probs=129.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCc
Q 015468 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (406)
Q Consensus 166 ~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 245 (406)
...|.+++|||++|++||.+||+. -.|+++.+.+. +|+..|-|||+|.+++++++|+ +.+...+..|.|.|..+.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~--~~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSN--CGIENLEIPRR--NGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTAG 84 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhc--CceeEEEEecc--CCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEccC
Confidence 347889999999999999999996 35787666554 7999999999999999999999 457788899999998886
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEE-EEeeCC-----CcEEEEEeCC
Q 015468 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVH-VKIPAG-----KRCGFVQFAN 319 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~-v~i~~~-----~~~afV~f~~ 319 (406)
.......... ..+.......+|.+.+||+.++++||.++|+..-.|.+ |.++.+ .+.|||.|++
T Consensus 85 ~~e~d~~~~~----------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~s 154 (510)
T KOG4211|consen 85 GAEADWVMRP----------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFES 154 (510)
T ss_pred CccccccccC----------CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecC
Confidence 6554321100 00111145678999999999999999999998755555 333322 5789999999
Q ss_pred HHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 320 RTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 320 ~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
.+.|++||.. |...|+.|.|+|..+.
T Consensus 155 qe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 155 QESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred HHHHHHHHHH-HHHhhccceEEeehhH
Confidence 9999999996 7788999999996544
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=6.8e-17 Score=129.32 Aligned_cols=85 Identities=27% Similarity=0.462 Sum_probs=76.0
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
.....+++|||+|||+++|+++|+++|++||.|.+|+|+.++.+++++|||||+|++.++|++|++.|++..|.+ +.+
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G--r~l 106 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG--RHI 106 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC--EEE
Confidence 335567889999999999999999999999999999999999999999999999999999999999999999976 456
Q ss_pred eeccccc
Q 015468 148 RLNWATY 154 (406)
Q Consensus 148 ~~~~~~~ 154 (406)
++.++..
T Consensus 107 ~V~~a~~ 113 (144)
T PLN03134 107 RVNPAND 113 (144)
T ss_pred EEEeCCc
Confidence 6666553
No 59
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.71 E-value=1.9e-16 Score=128.67 Aligned_cols=171 Identities=24% Similarity=0.363 Sum_probs=126.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC---Ccce
Q 015468 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTD-RTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS---TRPM 239 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~---g~~i 239 (406)
...++|||.+||.++...+|..+|+. |-..+.+.+... +...-.+-+|||+|.+..+|.+|+..|||..|+ +.+|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~-f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRR-FHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhcc-CCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34679999999999999999999998 877887776654 222345679999999999999999999998876 6778
Q ss_pred EeCcCccccccccccccccccCCCC----------------------------------CC-------------------
Q 015468 240 RIGPAATKKAATGQQYQKATYQNTQ----------------------------------GS------------------- 266 (406)
Q Consensus 240 ~v~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~------------------- 266 (406)
+++.+....+....+.......... ..
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 8877655433332211110000000 00
Q ss_pred ------------CCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeC--CCcEEEEEeCCHHHHHHHHHHhCC
Q 015468 267 ------------QGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA--GKRCGFVQFANRTCAEQALSVLNG 332 (406)
Q Consensus 267 ------------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~--~~~~afV~f~~~~~a~~a~~~l~~ 332 (406)
.......+.+|||.||..+++|++|+.+|+.|-....++|.. +...|||+|++.+.|..|+..|.|
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhc
Confidence 001223467899999999999999999999997766666643 356899999999999999999988
Q ss_pred cee
Q 015468 333 TQL 335 (406)
Q Consensus 333 ~~~ 335 (406)
..|
T Consensus 271 ~~~ 273 (284)
T KOG1457|consen 271 NLL 273 (284)
T ss_pred cee
Confidence 765
No 60
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.70 E-value=1.7e-15 Score=134.70 Aligned_cols=182 Identities=19% Similarity=0.308 Sum_probs=143.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcc
Q 015468 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (406)
Q Consensus 167 ~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 246 (406)
+.+||.|||+++.+.+|+++|....|+|+.|.++.| .+|+++|+|.|+|+++|.+++|++.|+.+.+.||+|.|+....
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 359999999999999999999988999999999999 5899999999999999999999999999999999999976544
Q ss_pred cccccccc--------------------------------------ccccccCC---CC---------------------
Q 015468 247 KKAATGQQ--------------------------------------YQKATYQN---TQ--------------------- 264 (406)
Q Consensus 247 ~~~~~~~~--------------------------------------~~~~~~~~---~~--------------------- 264 (406)
........ .+....+. +.
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 21111000 00000000 00
Q ss_pred --CCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeC-----CCcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 015468 265 --GSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA-----GKRCGFVQFANRTCAEQALSVLNGTQLGG 337 (406)
Q Consensus 265 --~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~-----~~~~afV~f~~~~~a~~a~~~l~~~~~~g 337 (406)
...-...+...++||.||.+.+..+.|++.|.-.|.|+.|.+-- .+++|.++|+.+-+|..||..|++.-+.+
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 00012345667899999999999999999999999999887643 37899999999999999999998877778
Q ss_pred ceeEEeeccCCC
Q 015468 338 QSIRLSWGRSPS 349 (406)
Q Consensus 338 ~~l~v~~~~~~~ 349 (406)
++.++.+.+-..
T Consensus 284 ~~~~~Rl~~~~D 295 (608)
T KOG4212|consen 284 RRMTVRLDRIPD 295 (608)
T ss_pred ccceeecccccc
Confidence 888888766443
No 61
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.68 E-value=1.5e-15 Score=131.40 Aligned_cols=171 Identities=14% Similarity=0.224 Sum_probs=136.1
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeE--------EEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVS--------GKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--------~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 141 (406)
......|||+|||.++|-+++.++|++||.|.. |+++++. .|..+|-|.+.|...++++.|+..|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 444567999999999999999999999998764 8999984 5999999999999999999999999999996
Q ss_pred CCCccceecccccCC---------------------------------CCCcCCCCCCceEEEcCCC----CCCC-----
Q 015468 142 STEQNFRLNWATYGA---------------------------------GERRQDDGPDFTIFVGDLA----ADVT----- 179 (406)
Q Consensus 142 ~~~~~v~~~~~~~~~---------------------------------~~~~~~~~~~~~l~v~~l~----~~~~----- 179 (406)
+ +.++|..|.... ....+.....++|.|+|+= +..+
T Consensus 210 g--~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 210 G--KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred C--cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 5 555554443110 0112233446789999872 2233
Q ss_pred --HHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcccc
Q 015468 180 --DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248 (406)
Q Consensus 180 --~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 248 (406)
.++|++...+ ||.|.+|.|.-. .+.|.+-|.|.+.++|..||..|+|..++||.|..+.++.+.
T Consensus 288 dlkedl~eec~K-~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 288 DLKEDLTEECEK-FGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHHH-hCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 4567777888 999999988644 368899999999999999999999999999999998877654
No 62
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=2.3e-16 Score=123.60 Aligned_cols=78 Identities=29% Similarity=0.510 Sum_probs=72.9
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
..++|||+||+..+++.||..+|..||.|.+|.|.+. .|||||+|+|+.+|..|+..|+|+.|+|..|+|++.+....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 3588999999999999999999999999999999775 79999999999999999999999999999999999987654
No 63
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=9.5e-17 Score=133.42 Aligned_cols=166 Identities=21% Similarity=0.372 Sum_probs=134.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccc
Q 015468 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (406)
Q Consensus 168 ~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 247 (406)
.+||++|++.+.+.+|.++|.. ||.|.++.+. .||+||+|.+..+|..|+..+++.++.+..+.|+++...
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~-yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKG-YGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhh-ccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 6999999999999999999998 9999998775 358899999999999999999999999988999988764
Q ss_pred cccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHH
Q 015468 248 KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQAL 327 (406)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~ 327 (406)
.......... ..............+.+.++|.++...+++.+|.++|..+|.+....+ .++++||+|++.++|.+|+
T Consensus 74 ~~~~g~~~~g-~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~ 150 (216)
T KOG0106|consen 74 RRGRGRPRGG-DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRAL 150 (216)
T ss_pred ccccCCCCCC-CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcc
Confidence 3222100000 000011112233556788999999999999999999999999966555 5789999999999999999
Q ss_pred HHhCCceeCCceeEEeec
Q 015468 328 SVLNGTQLGGQSIRLSWG 345 (406)
Q Consensus 328 ~~l~~~~~~g~~l~v~~~ 345 (406)
..|++..+.++.|++...
T Consensus 151 ~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 151 EKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhccchhhcCceeeeccc
Confidence 999999999999999433
No 64
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.1e-16 Score=133.11 Aligned_cols=152 Identities=19% Similarity=0.381 Sum_probs=126.6
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecccc
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~ 153 (406)
..|||++||+.+.+++|+.||..||.+.++.+. .+|+||+|.+..+|+.|+..|+++.|.+.. +.+.++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceeccee--eeeeccc
Confidence 359999999999999999999999999988875 468899999999999999999999998755 6666665
Q ss_pred cC------CCC---------CcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCC
Q 015468 154 YG------AGE---------RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGD 218 (406)
Q Consensus 154 ~~------~~~---------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 218 (406)
.. +.. ........+.|+|.+++..+...+|.+.|.+ +|.+....+ ..+++||+|.+
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~-~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRP-AGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcc-cCCCchhhh--------hccccceeehh
Confidence 21 110 0112344668999999999999999999998 999865544 25589999999
Q ss_pred HHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 219 ESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 219 ~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
.++|..|++.|++..+.++.|.+...
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999443
No 65
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.62 E-value=2e-14 Score=124.62 Aligned_cols=183 Identities=14% Similarity=0.188 Sum_probs=139.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhhCCCcc--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 015468 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVK--------GAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 235 (406)
..++.|||.|||.++|.+++.++|++ +|.|. .|++.++. .|..+|-|+|.|.-.+++..|+..|++..+.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sK-cGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSK-CGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHh-cceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44567999999999999999999998 77764 36778874 5999999999999999999999999999999
Q ss_pred CcceEeCcCccccccccccccc---------------cc-cC-CCCCCCCCCCCCCceEEEcCCCc----cCc-------
Q 015468 236 TRPMRIGPAATKKAATGQQYQK---------------AT-YQ-NTQGSQGENDPNNTTIFVGGLDP----SVT------- 287 (406)
Q Consensus 236 g~~i~v~~~~~~~~~~~~~~~~---------------~~-~~-~~~~~~~~~~~~~~~l~v~~l~~----~~~------- 287 (406)
|+.|+|+.+.-..........+ .. .. ......+......++|.|.|+=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999998775421111000000 00 00 00012233445568888988832 112
Q ss_pred HHHHHhhhccCCceEEEEee--CCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 288 DDILKTVFGQYGELVHVKIP--AGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 288 ~~~l~~~f~~~G~v~~v~i~--~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
.++|++.+++||.|.+|.|. ...|.+-|.|.+.++|..||..|+|+.|+||.|+.++-...
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 36678889999999999987 34799999999999999999999999999999998876544
No 66
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=5.7e-15 Score=122.02 Aligned_cols=85 Identities=24% Similarity=0.431 Sum_probs=78.2
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.-+..++|-|.||+.+++|++|++||..||.|..|.+.+|+.||.++|||||.|.+.++|.+||+.|||.-+. .+.++
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd--~LILr 262 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD--NLILR 262 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc--eEEEE
Confidence 3346678999999999999999999999999999999999999999999999999999999999999999884 68888
Q ss_pred ecccccC
Q 015468 149 LNWATYG 155 (406)
Q Consensus 149 ~~~~~~~ 155 (406)
++|+.+.
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9998753
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2.3e-15 Score=129.41 Aligned_cols=79 Identities=24% Similarity=0.395 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
....++|+|+|||+...|-||+..|++||+|.+|+|+.+ |||+||+|++.++|++|..+|||..|.||+|+|..|.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 344588999999999999999999999999999999753 8999999999999999999999999999999999887
Q ss_pred CCC
Q 015468 347 SPS 349 (406)
Q Consensus 347 ~~~ 349 (406)
.+-
T Consensus 173 arV 175 (376)
T KOG0125|consen 173 ARV 175 (376)
T ss_pred hhh
Confidence 653
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=4.8e-15 Score=122.08 Aligned_cols=82 Identities=26% Similarity=0.376 Sum_probs=69.6
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
+-.-.+|||+||+|.+..|+|+++|++||+|++..|+.|+.+|++|||+||+|+|.|+|.+|++.- +-.|+++...+.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccch
Confidence 344578999999999999999999999999999999999999999999999999999999999733 3446665555555
Q ss_pred ccc
Q 015468 150 NWA 152 (406)
Q Consensus 150 ~~~ 152 (406)
...
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 443
No 69
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=5.7e-15 Score=103.91 Aligned_cols=67 Identities=36% Similarity=0.645 Sum_probs=63.3
Q ss_pred EEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC
Q 015468 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (406)
Q Consensus 76 l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 143 (406)
|||+|||+++|+++|+++|+.||.|..+++..+ .++..+++|||+|.+.++|+.|++.|++..+.++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 799999999999999999999999999999998 6788999999999999999999999999888654
No 70
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=2.5e-14 Score=123.09 Aligned_cols=93 Identities=20% Similarity=0.391 Sum_probs=76.3
Q ss_pred CCCCCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 015468 65 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (406)
Q Consensus 65 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 144 (406)
....+.+..++|+|+|||+...|-||+.+|++||+|.+|.|+-+. -| +|||+||+|++.+||++|.++|+|..+++++
T Consensus 88 t~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-RG-SKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 88 TNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-RG-SKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred CcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-CC-CCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 344556677899999999999999999999999999999999863 23 8999999999999999999999999998654
Q ss_pred ccceecccccCCCCCcC
Q 015468 145 QNFRLNWATYGAGERRQ 161 (406)
Q Consensus 145 ~~v~~~~~~~~~~~~~~ 161 (406)
|+|+.++.....++.
T Consensus 166 --IEVn~ATarV~n~K~ 180 (376)
T KOG0125|consen 166 --IEVNNATARVHNKKK 180 (376)
T ss_pred --EEEeccchhhccCCc
Confidence 455555444333333
No 71
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.56 E-value=1.8e-14 Score=115.82 Aligned_cols=77 Identities=31% Similarity=0.513 Sum_probs=71.6
Q ss_pred CceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccC
Q 015468 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347 (406)
Q Consensus 274 ~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 347 (406)
...|.|.||.+-++.++|+.+|++||.|-+|.|+++ +|||||.|.+..+|+.|+++|+|..|+|+.|+|.+|+=
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 367999999999999999999999999999999986 79999999999999999999999999999999998875
Q ss_pred CCC
Q 015468 348 PSN 350 (406)
Q Consensus 348 ~~~ 350 (406)
...
T Consensus 93 gr~ 95 (256)
T KOG4207|consen 93 GRP 95 (256)
T ss_pred CCC
Confidence 443
No 72
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=9.1e-15 Score=108.37 Aligned_cols=81 Identities=19% Similarity=0.326 Sum_probs=73.1
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
...++||||+||+..++||.|.+||+++|.|..|.+-.|+.+.+.-|||||+|.+.++|+.|++.+++..++.+.+.+..
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45689999999999999999999999999999999999998888999999999999999999999999999765544444
Q ss_pred c
Q 015468 150 N 150 (406)
Q Consensus 150 ~ 150 (406)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 3
No 73
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.4e-14 Score=119.69 Aligned_cols=82 Identities=26% Similarity=0.465 Sum_probs=79.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++|.|.||+.++++++|+++|.+ ||.|..+.|.+|..||.++|||||.|.+.++|.+||+.|||+-++.-.|+|+|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~-fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRP-FGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhc-cCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 5668999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 015468 245 ATK 247 (406)
Q Consensus 245 ~~~ 247 (406)
.++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 74
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=3.3e-14 Score=99.95 Aligned_cols=70 Identities=34% Similarity=0.709 Sum_probs=66.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 169 l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
|||+|||.++++++|+++|+. ||.|..+.+..+ .+++.+++|||+|.+.++|++|++.+++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999998 999999999998 6889999999999999999999999999999999875
No 75
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.6e-14 Score=119.07 Aligned_cols=80 Identities=34% Similarity=0.502 Sum_probs=72.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
.-++|||++|+|.+..++|+++|++ ||+|++.+|+.|+.++++|||+||+|.|.++|.+|++.. .-.|+||+..++.+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeq-fGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQ-FGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHH-hCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 3458999999999999999999998 999999999999999999999999999999999999653 45789999888877
Q ss_pred cc
Q 015468 245 AT 246 (406)
Q Consensus 245 ~~ 246 (406)
..
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 65
No 76
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.4e-14 Score=121.49 Aligned_cols=74 Identities=23% Similarity=0.327 Sum_probs=69.4
Q ss_pred CceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC---CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 274 ~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~---~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
.++|||+||++.+++++|+++|+.||.|++|+|+++ ++||||+|++.++|..||. |+|..|.|+.|+|+++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 478999999999999999999999999999999876 6899999999999999996 9999999999999998754
No 77
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=1.8e-14 Score=113.00 Aligned_cols=78 Identities=22% Similarity=0.404 Sum_probs=69.5
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
...++|||+||+..+++.||+..|..||.|.+|+|-+. ..|||||+|+++.+|+.|+..|+|+.|.+..+.|++.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34688999999999999999999999999999999886 4899999999999999999999999998766666665
Q ss_pred ccc
Q 015468 151 WAT 153 (406)
Q Consensus 151 ~~~ 153 (406)
...
T Consensus 83 ~G~ 85 (195)
T KOG0107|consen 83 TGR 85 (195)
T ss_pred cCC
Confidence 444
No 78
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=1.6e-13 Score=124.82 Aligned_cols=130 Identities=18% Similarity=0.336 Sum_probs=107.2
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc-
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW- 151 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~- 151 (406)
.++|||+|||.++|+++|+++|..||.|..+.+..++.+++++|+|||+|.+.++|..|+..+++..|.++.+.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998899999999999999999999999999999987766666643
Q ss_pred -cccCCCCC---------------cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecC
Q 015468 152 -ATYGAGER---------------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDR 203 (406)
Q Consensus 152 -~~~~~~~~---------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~ 203 (406)
........ .........+++.+++..++..++...|.. ++.+....+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 261 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKS-RGDIVRASLPPSK 261 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccc-cccceeeeccCCC
Confidence 11111111 122234567899999999999999999998 9998666665543
No 79
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=5.2e-14 Score=104.37 Aligned_cols=81 Identities=22% Similarity=0.353 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
.+++|||+||++.++|+.|.++|++ .|+|..|.+-.|+.+..+-|||||+|.+.++|+.|++-+++..++.+.|++.|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 3459999999999999999999998 999999999999989999999999999999999999999999999999999987
Q ss_pred cc
Q 015468 245 AT 246 (406)
Q Consensus 245 ~~ 246 (406)
..
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 54
No 80
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=5.6e-13 Score=121.22 Aligned_cols=143 Identities=27% Similarity=0.506 Sum_probs=114.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCc
Q 015468 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (406)
Q Consensus 166 ~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 245 (406)
..+|||+||+.++++++|.++|.. ||.|..+.+..+..+++++|+|||+|.+.++|..|++.+++..+.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~-~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK-FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh-cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 589999999999999999999998 9999999999998899999999999999999999999999999999999999965
Q ss_pred c-ccccccccc--cccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC
Q 015468 246 T-KKAATGQQY--QKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG 309 (406)
Q Consensus 246 ~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~ 309 (406)
. ......... .....................+++.+++..++..++...|..+|.+..+.+...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 194 PASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred cccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 3 111111000 000001112223344556688999999999999999999999999977777654
No 81
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=5e-14 Score=98.97 Aligned_cols=67 Identities=30% Similarity=0.571 Sum_probs=60.7
Q ss_pred EEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC
Q 015468 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (406)
Q Consensus 76 l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 143 (406)
|||+|||+++++++|+++|+.+|.|..+++..++. +..+++|||+|.+.++|..|++.+++..+.++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 79999999999999999999999999999999876 88999999999999999999999888877654
No 82
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2.3e-13 Score=116.45 Aligned_cols=74 Identities=14% Similarity=0.268 Sum_probs=65.7
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
.++|||+|||+++|+++|+++|+.||.|.+|.|+.+.. .+|||||+|++.++|+.|+. |+|..|.++.+.|...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEec
Confidence 57899999999999999999999999999999998753 57999999999999999996 9999997665555443
No 83
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=2.3e-13 Score=97.01 Aligned_cols=76 Identities=18% Similarity=0.380 Sum_probs=69.7
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC---CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~---~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
-++.|||.|||+++|.|++.++|.+||.|..|+|-.. +|.|||.|+|..+|++|+..|+|..++++.|.|-+-.+.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 4578999999999999999999999999999999654 899999999999999999999999999999999876543
No 84
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=2.9e-13 Score=126.26 Aligned_cols=180 Identities=15% Similarity=0.298 Sum_probs=135.7
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
........+||++||..++++.+.+++..||.+....++.+..+|.++||||.+|.+......|+..|||+.+.+..+.+
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 33455678999999999999999999999999999999999999999999999999999999999999999997666655
Q ss_pred eecccccCCCCC-----------------cCCCCCCceEEEcCCCC--C-CCH-------HHHHHHHHhhCCCccEEEEE
Q 015468 148 RLNWATYGAGER-----------------RQDDGPDFTIFVGDLAA--D-VTD-------YVLQETFRAVYSSVKGAKVV 200 (406)
Q Consensus 148 ~~~~~~~~~~~~-----------------~~~~~~~~~l~v~~l~~--~-~~~-------~~l~~~f~~~~g~i~~~~~~ 200 (406)
............ .....++..|.+.|+-. + .++ ++++..+.+ ||.|.+|.+.
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k-~g~v~~v~ip 442 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAK-FGAVRSVEIP 442 (500)
T ss_pred ehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcc-cCceeEEecC
Confidence 544322111100 11122333444444311 0 122 345556666 9999999998
Q ss_pred ec-C--CCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcccc
Q 015468 201 TD-R--TTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248 (406)
Q Consensus 201 ~~-~--~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 248 (406)
++ . ...-..|..||+|.+.+++.+|+++|+|..+.+|+|...|-+..+
T Consensus 443 r~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 443 RPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred CCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 87 2 123456778999999999999999999999999999988876543
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=99.47 E-value=1.8e-13 Score=123.86 Aligned_cols=76 Identities=24% Similarity=0.403 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC--CcEEEEEeCCH--HHHHHHHHHhCCceeCCceeEEeeccC
Q 015468 272 PNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG--KRCGFVQFANR--TCAEQALSVLNGTQLGGQSIRLSWGRS 347 (406)
Q Consensus 272 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~--~~~afV~f~~~--~~a~~a~~~l~~~~~~g~~l~v~~~~~ 347 (406)
....+||||||++.+++++|+.+|+.||.|.+|.|++. ||||||+|.+. +++.+||..|||.++.|+.|+|..|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 44578999999999999999999999999999999875 89999999976 689999999999999999999998874
No 86
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=4.1e-13 Score=95.77 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=66.4
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 144 (406)
......+-|||+|||+++|.|++.++|.+||.|..|+|-..+. .+|.|||.|++..+|++|++.|+|..+.++-
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry 86 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRY 86 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCce
Confidence 3456778999999999999999999999999999999987654 6899999999999999999999999887543
No 87
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=4e-13 Score=94.37 Aligned_cols=70 Identities=24% Similarity=0.589 Sum_probs=64.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 169 l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
|+|+|||+++++++|+++|+. ||.|..+.+..+.. +.++++|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~-~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR-FGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT-SSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999998 99999999999866 89999999999999999999999999999999874
No 88
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=3.5e-13 Score=114.70 Aligned_cols=86 Identities=21% Similarity=0.319 Sum_probs=78.7
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
...+.-+||||.-|+.+++|..|+..|+.||.|+.|+|+++..||+++|||||+|+++.+...|.+..+|..|.++.+.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999998877777
Q ss_pred eecccc
Q 015468 148 RLNWAT 153 (406)
Q Consensus 148 ~~~~~~ 153 (406)
.++...
T Consensus 176 DvERgR 181 (335)
T KOG0113|consen 176 DVERGR 181 (335)
T ss_pred Eecccc
Confidence 666543
No 89
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=4.3e-12 Score=116.29 Aligned_cols=159 Identities=19% Similarity=0.312 Sum_probs=115.4
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCC--Cccc---eEEEEEcCHHHHHHHHHHhCCC----CC
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTN--FSEG---YGFIEFVSHAAAERVLQTFNGT----QM 140 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g--~~~g---~afV~f~~~~~A~~A~~~l~~~----~~ 140 (406)
..-+++|||++||++++|+.|...|..||.+.--+-.+....+ -.+| |+|+-|+++.++...+.++.-. .|
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 3446789999999999999999999999976322221111111 1355 9999999999998887654321 11
Q ss_pred CC-----CCccceec-ccccCC---CCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceE
Q 015468 141 PS-----TEQNFRLN-WATYGA---GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGY 211 (406)
Q Consensus 141 ~~-----~~~~v~~~-~~~~~~---~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~ 211 (406)
.. +.+.|.+. |...+. ........+.+|||||+||.-++.++|..+|+..||.|..+-|-.|++-+.++|-
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 10 11112221 111111 1122344567899999999999999999999988999999999999888999999
Q ss_pred EEEEeCCHHHHHHHHHH
Q 015468 212 GFVRFGDESEQLRSMTE 228 (406)
Q Consensus 212 ~fv~f~~~~~a~~a~~~ 228 (406)
|-|+|.+..+-.+||.+
T Consensus 416 GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceeeecccHHHHHHHhh
Confidence 99999999999999864
No 90
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.43 E-value=1.8e-13 Score=110.13 Aligned_cols=81 Identities=21% Similarity=0.381 Sum_probs=75.0
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
.+.-.+|.|-||.+-++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.|+++|+|..|+++.+.|.+
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999887766655
Q ss_pred c
Q 015468 150 N 150 (406)
Q Consensus 150 ~ 150 (406)
.
T Consensus 90 a 90 (256)
T KOG4207|consen 90 A 90 (256)
T ss_pred h
Confidence 4
No 91
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=6.9e-13 Score=111.55 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=68.3
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC---CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccC
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~---~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 347 (406)
...+|||+||++.+|+++|+++|+.||+|.+|+|.++ +++|||+|++.++|..|+. |+|..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 4578999999999999999999999999999999986 4799999999999999996 899999999999987664
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.3e-13 Score=111.88 Aligned_cols=80 Identities=30% Similarity=0.605 Sum_probs=74.8
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
..++|||++|.++++|.-|...|-.||.|.+|.|+.+ |+|+||+|+..|+|..||..||+.++.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3478999999999999999999999999999999865 8999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 015468 347 SPSNKQ 352 (406)
Q Consensus 347 ~~~~~~ 352 (406)
+.+.+.
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 887553
No 93
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=1.1e-14 Score=114.72 Aligned_cols=77 Identities=23% Similarity=0.405 Sum_probs=71.0
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.+..|||+|||++.||.||.-.|++||+|++|.+++|+.||+++||||+.|++..+...|+..|||..|.++.+.|.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 46789999999999999999999999999999999999999999999999999999999999999999976544443
No 94
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=9.7e-13 Score=112.01 Aligned_cols=86 Identities=26% Similarity=0.500 Sum_probs=79.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
....+-+||||+-|+.+++|.+|+..|+. ||.|+.|.|+.|..||+++|||||+|.++.+..+|.+..+|..|+++.|.
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~-YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEK-YGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHh-cCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 33456779999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred eCcCccc
Q 015468 241 IGPAATK 247 (406)
Q Consensus 241 v~~~~~~ 247 (406)
|.+....
T Consensus 175 VDvERgR 181 (335)
T KOG0113|consen 175 VDVERGR 181 (335)
T ss_pred EEecccc
Confidence 9875443
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.41 E-value=8.2e-13 Score=111.09 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=63.9
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
...+|||+||++.+|+++|++||+.||.|.+|+|+++. +.+++|||+|+++++|+.|+. |+|..|.+..+.|
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~I 75 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCI 75 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEE
Confidence 45789999999999999999999999999999999874 456899999999999999996 9999997655433
No 96
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.41 E-value=1.5e-12 Score=86.85 Aligned_cols=55 Identities=35% Similarity=0.631 Sum_probs=51.8
Q ss_pred HHhhhccCCceEEEEeeCCC-cEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeec
Q 015468 291 LKTVFGQYGELVHVKIPAGK-RCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWG 345 (406)
Q Consensus 291 l~~~f~~~G~v~~v~i~~~~-~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 345 (406)
|+++|++||+|.++.+.+++ ++|||+|.+.++|.+|+..||+..++|+.|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999999887 99999999999999999999999999999999986
No 97
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.40 E-value=6.4e-12 Score=118.29 Aligned_cols=173 Identities=13% Similarity=0.050 Sum_probs=121.6
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
.-....+.+-+++.++++++.|+++||-.. .|..+.|..+...+...|-++|+|....++.+|+. -+.+.+. .+.+
T Consensus 306 qvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~--~R~~ 381 (944)
T KOG4307|consen 306 QVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDV--NRPF 381 (944)
T ss_pred cccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhh--hcce
Confidence 334556778889999999999999999754 36666676665555558999999999999999987 3333332 2222
Q ss_pred eeccccc---------------------------------CCC-CCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCC
Q 015468 148 RLNWATY---------------------------------GAG-ERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193 (406)
Q Consensus 148 ~~~~~~~---------------------------------~~~-~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~ 193 (406)
.+.-... ... .....-.....|||..||..+++.++.++|.+ --.
T Consensus 382 q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~-~~~ 460 (944)
T KOG4307|consen 382 QTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMG-AAA 460 (944)
T ss_pred eecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhh-hhh
Confidence 2211100 000 00011233568999999999999999999998 566
Q ss_pred ccE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcc
Q 015468 194 VKG-AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (406)
Q Consensus 194 i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 246 (406)
|++ |.|... -+++.++.|||+|..++++..|...-+.+.++.|.|+|.....
T Consensus 461 Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 461 VEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred hhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 777 555444 4788899999999998888888766666777778888765443
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.39 E-value=4.4e-13 Score=124.43 Aligned_cols=84 Identities=31% Similarity=0.555 Sum_probs=79.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcc
Q 015468 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (406)
Q Consensus 167 ~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 246 (406)
+.+||||+|+++++++|.++|+. .|.|.+++++.|+.+|+++||+|++|.+.++|..|++.||+.++.||+|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~-~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSG-VGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhc-cCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 68999999999999999999998 99999999999999999999999999999999999999999999999999999877
Q ss_pred ccccc
Q 015468 247 KKAAT 251 (406)
Q Consensus 247 ~~~~~ 251 (406)
.+.+.
T Consensus 98 ~~~~~ 102 (435)
T KOG0108|consen 98 RKNAE 102 (435)
T ss_pred cchhH
Confidence 65543
No 99
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=4.1e-14 Score=111.54 Aligned_cols=84 Identities=23% Similarity=0.491 Sum_probs=78.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
.+.-|||+|||+++|+.||...|++ ||+|.+|.+++|..||+++||||+-|++-.+...|++.|||..|.||.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSq-yGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQ-YGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeec-cCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3448999999999999999999998 999999999999999999999999999999999999999999999999999876
Q ss_pred ccccc
Q 015468 245 ATKKA 249 (406)
Q Consensus 245 ~~~~~ 249 (406)
.....
T Consensus 113 ~~Yk~ 117 (219)
T KOG0126|consen 113 SNYKK 117 (219)
T ss_pred ccccC
Confidence 55443
No 100
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.9e-13 Score=109.96 Aligned_cols=86 Identities=27% Similarity=0.499 Sum_probs=81.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++|||++|..++++.-|...|-+ ||.|.+|.+..|-++.+.+||+||+|...|+|.+||+.||+.++.||.|+|+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIP-FGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIP-FGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhcccc-ccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3459999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc
Q 015468 245 ATKKAAT 251 (406)
Q Consensus 245 ~~~~~~~ 251 (406)
.+.+...
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 9977654
No 101
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=2.8e-12 Score=90.29 Aligned_cols=68 Identities=44% Similarity=0.809 Sum_probs=64.0
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCC----cEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGK----RCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~----~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
+|+|+|||..+++++|+++|+.||.|.++.+..+. ++|||+|.+.++|.+|+..+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998875 999999999999999999999999999998874
No 102
>smart00362 RRM_2 RNA recognition motif.
Probab=99.36 E-value=3e-12 Score=90.16 Aligned_cols=67 Identities=30% Similarity=0.594 Sum_probs=61.6
Q ss_pred eEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC
Q 015468 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (406)
Q Consensus 75 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 143 (406)
+|+|+|||.++++++|+++|+.||.|..+.+..+. +.++++|||+|.+.++|..|++.+++..+.+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~ 67 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGR 67 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCE
Confidence 58999999999999999999999999999999875 66889999999999999999999998877553
No 103
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.35 E-value=2.1e-11 Score=107.27 Aligned_cols=172 Identities=12% Similarity=0.162 Sum_probs=124.1
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcc---c-CCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGH---T-GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~---~-G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
--.|.+++||+++++.+|.+||.. . |..+.|.+++. .+|+..|-|||.|..+++|..|+.+ +...|. .+.|+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iG--qRYIE 236 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIG--QRYIE 236 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHh--HHHHH
Confidence 345888999999999999999962 2 23556666654 5788999999999999999999973 222221 12222
Q ss_pred ecccc--------------------cC------CCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCC-ccE--EEE
Q 015468 149 LNWAT--------------------YG------AGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS-VKG--AKV 199 (406)
Q Consensus 149 ~~~~~--------------------~~------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~-i~~--~~~ 199 (406)
+-.++ .. +...........+|.+++||++.+.++|.+||.. |.. |.. |.+
T Consensus 237 lFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flgd-Fa~~i~f~gVHm 315 (508)
T KOG1365|consen 237 LFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGD-FATDIRFQGVHM 315 (508)
T ss_pred HHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHH-HhhhcccceeEE
Confidence 11110 00 0000112223558999999999999999999997 654 333 566
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcccccc
Q 015468 200 VTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250 (406)
Q Consensus 200 ~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 250 (406)
..+ ..|++.|-|||+|.+.|+|.+|...++.+....|.|.|..++.....
T Consensus 316 v~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln 365 (508)
T KOG1365|consen 316 VLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELN 365 (508)
T ss_pred EEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHH
Confidence 665 57999999999999999999999999988888999999877665443
No 104
>PLN03213 repressor of silencing 3; Provisional
Probab=99.35 E-value=4.5e-12 Score=114.92 Aligned_cols=81 Identities=20% Similarity=0.374 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCH--HHHHHHHHHhcCcccCCcceEe
Q 015468 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDE--SEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~l~g~~~~g~~i~v 241 (406)
....+||||||++++++++|...|.. ||.|.+|.|++ .+| ||||||+|.+. .++.+||..|||..+.|+.|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSe-FGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSP-MGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34468999999999999999999998 99999999994 466 89999999987 7899999999999999999999
Q ss_pred CcCccccc
Q 015468 242 GPAATKKA 249 (406)
Q Consensus 242 ~~~~~~~~ 249 (406)
+.+.+.-.
T Consensus 83 NKAKP~YL 90 (759)
T PLN03213 83 EKAKEHYL 90 (759)
T ss_pred eeccHHHH
Confidence 99887543
No 105
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=2e-13 Score=131.51 Aligned_cols=241 Identities=13% Similarity=0.125 Sum_probs=184.1
Q ss_pred CCceEEEeCCCCCcCHH-HHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 72 GIRSLWIGDLQPWMEES-YIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~-~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
..+...+.++.+...+. .++..|..+|.|+.|++......-....+.++.+....+++.|.. ..+..+.+....+.+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 34567788888876665 678999999999999987733322233488999999999999987 5555554444444333
Q ss_pred ccccCCCCC---cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015468 151 WATYGAGER---RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (406)
Q Consensus 151 ~~~~~~~~~---~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 227 (406)
.+....... ........++|+.||+..+.+.+|...|.. ++.+..+.+......++.+|.|+++|...+++.+|+.
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~-~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSP-SGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCc-cchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 332211111 111223457899999999999999999998 9998888777555678999999999999999999996
Q ss_pred HhcCcccCCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEee
Q 015468 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP 307 (406)
Q Consensus 228 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~ 307 (406)
-..++.++ ..+|+|.|+|+..|.++|+.+|+.+|.+.++.++
T Consensus 728 f~d~~~~g--------------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~v 769 (881)
T KOG0128|consen 728 FRDSCFFG--------------------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLV 769 (881)
T ss_pred hhhhhhhh--------------------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchh
Confidence 54443333 1458999999999999999999999999998775
Q ss_pred CC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCCCC
Q 015468 308 AG-----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQ 352 (406)
Q Consensus 308 ~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 352 (406)
.. +|.|+|.|.+..++.+++.......+..+.+.|....+.+.+.
T Consensus 770 t~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K~ 819 (881)
T KOG0128|consen 770 TVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDKK 819 (881)
T ss_pred hhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCccccc
Confidence 43 7899999999999999999888888888888888877655444
No 106
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=2.4e-12 Score=96.44 Aligned_cols=88 Identities=23% Similarity=0.371 Sum_probs=80.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
..+.....|||.++...+++++|.+.|.. ||+|+++.+..|+.+|..+||++|+|.+.+.|.+|++.+|+..+.+..|.
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~d-yGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFAD-YGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhh-cccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 34445567999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred eCcCccccc
Q 015468 241 IGPAATKKA 249 (406)
Q Consensus 241 v~~~~~~~~ 249 (406)
|.|+-.+..
T Consensus 146 VDw~Fv~gp 154 (170)
T KOG0130|consen 146 VDWCFVKGP 154 (170)
T ss_pred EEEEEecCC
Confidence 999865543
No 107
>smart00360 RRM RNA recognition motif.
Probab=99.32 E-value=6.1e-12 Score=88.21 Aligned_cols=66 Identities=32% Similarity=0.627 Sum_probs=61.3
Q ss_pred EeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC
Q 015468 78 IGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (406)
Q Consensus 78 V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 143 (406)
|+|||.++++++|+++|+.||.|..+.+..++.+++++++|||+|.+.++|..|++.+++..+.+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~ 66 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGR 66 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc
Confidence 679999999999999999999999999999877788999999999999999999999998888653
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=4.1e-11 Score=109.94 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=109.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEE-ecCCC--CCcce---EEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVV-TDRTT--GRSKG---YGFVRFGDESEQLRSMTEMNGVLCSTRP 238 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~-~~~~~--~~~~g---~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 238 (406)
-+++|||++||++++|+.|...|.. ||.+.. ... +.... --++| |+|+.|+++.++..-+.++.. .-.+--
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~-FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQ-FGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhccc-ccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccceE
Confidence 3568999999999999999999998 998642 222 11111 12456 999999999998888876543 111222
Q ss_pred eEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhc-cCCceEEEEeeCC------Cc
Q 015468 239 MRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFG-QYGELVHVKIPAG------KR 311 (406)
Q Consensus 239 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~G~v~~v~i~~~------~~ 311 (406)
+.|.-...+.+...-..+......-.......-.+.++||||+||.-++.++|..+|+ -||.|+.+-|-.| +|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 2222222222111111111111111111223334568999999999999999999998 7999999988766 78
Q ss_pred EEEEEeCCHHHHHHHHHH
Q 015468 312 CGFVQFANRTCAEQALSV 329 (406)
Q Consensus 312 ~afV~f~~~~~a~~a~~~ 329 (406)
.|-|+|.+..+-.+||.+
T Consensus 415 aGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cceeeecccHHHHHHHhh
Confidence 999999999999999985
No 109
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.31 E-value=1.2e-11 Score=114.23 Aligned_cols=78 Identities=28% Similarity=0.477 Sum_probs=67.2
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeC----C--CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA----G--KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~----~--~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
....|||+|||.+++.++|+++|..||.|+...|.. + .+||||+|++.+++..||.+ +-..+++++|.|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 335599999999999999999999999999877754 2 27999999999999999996 6788999999999888
Q ss_pred CCCCC
Q 015468 347 SPSNK 351 (406)
Q Consensus 347 ~~~~~ 351 (406)
+....
T Consensus 366 ~~~~g 370 (419)
T KOG0116|consen 366 PGFRG 370 (419)
T ss_pred ccccc
Confidence 75444
No 110
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=2.1e-11 Score=112.75 Aligned_cols=156 Identities=22% Similarity=0.235 Sum_probs=98.5
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
..+-..++|+|-|||.++++++|+.+|+.||+|.+|+.-.. .++.+||+|.|..+|+.|+++|++..+.++.+.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k- 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK- 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc-
Confidence 33556789999999999999999999999999999776554 589999999999999999999999988765433
Q ss_pred eecccccCC----------------CCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceE
Q 015468 148 RLNWATYGA----------------GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGY 211 (406)
Q Consensus 148 ~~~~~~~~~----------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~ 211 (406)
+-.-+.... ............+++ .|++..+...++..+. ++|.+.. +. ++.-...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~-~~~~~~~-~~-----~~~~~hq 215 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISS-VDGSSPG-RE-----TPLLNHQ 215 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchh-ccCcccc-cc-----ccchhhh
Confidence 110000000 000001111123333 3777777655554454 4776654 22 2222235
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccCCcc
Q 015468 212 GFVRFGDESEQLRSMTEMNGVLCSTRP 238 (406)
Q Consensus 212 ~fv~f~~~~~a~~a~~~l~g~~~~g~~ 238 (406)
-|++|.+..++..+.... |..+.+..
T Consensus 216 ~~~~~~~~~s~a~~~~~~-G~~~s~~~ 241 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEPRG-GFLISNSS 241 (549)
T ss_pred hhhhhccccchhhcccCC-ceecCCCC
Confidence 667777777775554422 44444433
No 111
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=5.1e-12 Score=94.70 Aligned_cols=79 Identities=16% Similarity=0.387 Sum_probs=71.3
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceeccc
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~ 152 (406)
.-.|||.++...++|++|.+.|..||+|+.|++-.|+.+|-.+|||+|+|++.++|.+|+..+||..|.+.+ |.|.|.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~--v~VDw~ 149 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN--VSVDWC 149 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc--eeEEEE
Confidence 346999999999999999999999999999999999999999999999999999999999999999987654 445554
Q ss_pred c
Q 015468 153 T 153 (406)
Q Consensus 153 ~ 153 (406)
-
T Consensus 150 F 150 (170)
T KOG0130|consen 150 F 150 (170)
T ss_pred E
Confidence 3
No 112
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=1.1e-12 Score=106.76 Aligned_cols=142 Identities=18% Similarity=0.332 Sum_probs=119.2
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
.+..+||||.|+...++|+.|.++|-..|+|..|.|..++ +++.+ ||||.|+++-++.-|++.+||..+.+..+.+.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~- 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT- 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc-
Confidence 4567999999999999999999999999999999998874 56566 99999999999999999999998877655553
Q ss_pred cccccCCCCCcCCCCCCceEEEcC----CCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 015468 150 NWATYGAGERRQDDGPDFTIFVGD----LAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225 (406)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~v~~----l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 225 (406)
++.|+ |...++++.+.+.|+. -+.++.+++.++. +++++.++|+++......-.+
T Consensus 83 -------------------~r~G~shapld~r~~~ei~~~v~s~-a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 83 -------------------LRCGNSHAPLDERVTEEILYEVFSQ-AGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred -------------------cccCCCcchhhhhcchhhheeeecc-cCCCCCccccccc-cCCccCccchhhhhhhcCcHH
Confidence 44444 6677888999999997 8999999999885 588999999999888777777
Q ss_pred HHHhcCcccC
Q 015468 226 MTEMNGVLCS 235 (406)
Q Consensus 226 ~~~l~g~~~~ 235 (406)
+....+.+..
T Consensus 142 ~~~y~~l~~~ 151 (267)
T KOG4454|consen 142 LDLYQGLELF 151 (267)
T ss_pred hhhhcccCcC
Confidence 7765554433
No 113
>smart00360 RRM RNA recognition motif.
Probab=99.29 E-value=2e-11 Score=85.50 Aligned_cols=71 Identities=34% Similarity=0.697 Sum_probs=66.2
Q ss_pred EcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 171 VGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 171 v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
|+|||..+++++|+++|+. ||.|..+.+..+..++.++++|||+|.+.++|..|++.+++..+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK-FGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHh-hCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999998 9999999999987778999999999999999999999999999999988764
No 114
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.25 E-value=4.1e-11 Score=84.74 Aligned_cols=69 Identities=41% Similarity=0.783 Sum_probs=64.6
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
+|+|+|||..+++++|+++|+.||.|..+.+..+ +++|||+|.+.++|..|+..+++..+.|+.+.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999998865 68999999999999999999999999999999875
No 115
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=4.7e-11 Score=104.05 Aligned_cols=84 Identities=31% Similarity=0.612 Sum_probs=75.0
Q ss_pred CCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHh-CCceeCCceeEEee
Q 015468 266 SQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVL-NGTQLGGQSIRLSW 344 (406)
Q Consensus 266 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~ 344 (406)
..+..+....+|||++|.+.+++.+|+++|.+||+|++|.+...+++|||+|.+.++|+.|..++ |...|+|.+|.|.|
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34556667789999999999999999999999999999999999999999999999999888766 65668999999999
Q ss_pred ccCCC
Q 015468 345 GRSPS 349 (406)
Q Consensus 345 ~~~~~ 349 (406)
++++.
T Consensus 300 g~~~~ 304 (377)
T KOG0153|consen 300 GRPKQ 304 (377)
T ss_pred CCCcc
Confidence 99843
No 116
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.22 E-value=2.8e-11 Score=112.59 Aligned_cols=78 Identities=28% Similarity=0.582 Sum_probs=72.4
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecccc
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~ 153 (406)
++|||+|||++++|++|.++|+..|.|.+++++.|+.+|+.+||||++|.+.++|+.|++.|||..+.+ +.+++.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g--r~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG--RKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC--ceEEeeccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999965 555555554
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=99.21 E-value=6.6e-11 Score=82.65 Aligned_cols=62 Identities=16% Similarity=0.375 Sum_probs=55.0
Q ss_pred HHHHHHHHH----hhCCCccEEE-EEecCCC--CCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 180 DYVLQETFR----AVYSSVKGAK-VVTDRTT--GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 180 ~~~l~~~f~----~~~g~i~~~~-~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
+++|+++|+ + ||.|.++. +..+..+ ++++|++||+|.+.++|.+|+..|||..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~-fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEY-FGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHh-cCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888887 8 99999996 7776656 8999999999999999999999999999999998763
No 118
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.19 E-value=1.8e-10 Score=81.43 Aligned_cols=74 Identities=38% Similarity=0.709 Sum_probs=67.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCc
Q 015468 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (406)
Q Consensus 168 ~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 243 (406)
+|+|+|||..+++++|+++|.. +|.|..+.+..+..+ ..+++|||+|.+.++|..|++.+++..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~-~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSK-FGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHh-cCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999998 999999999987543 7789999999999999999999999999999988764
No 119
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.17 E-value=8.3e-11 Score=112.47 Aligned_cols=83 Identities=25% Similarity=0.554 Sum_probs=77.8
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
....+++|||++|+..+++.||.++|+.||.|.+|.++..++||||.+....+|.+|+.+|++..+.++.|+|.|+..+.
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCC
Q 015468 350 NKQ 352 (406)
Q Consensus 350 ~~~ 352 (406)
-+.
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 553
No 120
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.15 E-value=6.8e-11 Score=105.13 Aligned_cols=178 Identities=21% Similarity=0.287 Sum_probs=142.4
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
...+++|++++.+.+.+.++..++..+|.+..+.+........+++++++.|...+.+..|+.......+..+.....+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46789999999999999999999999998888888776677789999999999999999999854444554443333333
Q ss_pred ccccC---CCCCcCCCCCCceEE-EcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 015468 151 WATYG---AGERRQDDGPDFTIF-VGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226 (406)
Q Consensus 151 ~~~~~---~~~~~~~~~~~~~l~-v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 226 (406)
..... ............+++ +++|+..+++++|+.+|.. +|.|..+++..++.++.++|+++|.|.+...+..++
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVS-SGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccC-cCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 32221 111112223333454 9999999999999999987 999999999999999999999999999999999999
Q ss_pred HHhcCcccCCcceEeCcCcccccc
Q 015468 227 TEMNGVLCSTRPMRIGPAATKKAA 250 (406)
Q Consensus 227 ~~l~g~~~~g~~i~v~~~~~~~~~ 250 (406)
.. ....+.++++.+.+..+....
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hc-ccCcccCcccccccCCCCccc
Confidence 77 788999999999998876544
No 121
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.15 E-value=9.7e-11 Score=104.17 Aligned_cols=175 Identities=23% Similarity=0.290 Sum_probs=135.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
...++|++++.+.+.+.++..++.. .|.+....+........+++++.+.|...+.+..|+.......+.++.+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~-~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSE-AGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchh-hcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4568999999999999988888887 888777777776667889999999999999999999655445666666665555
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeC
Q 015468 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFA 318 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~ 318 (406)
......... ..............+|++|++.+++++|+.+|..+|.|..++++.. +++++|.|.
T Consensus 166 ~~~~~~~~n----------~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~ 235 (285)
T KOG4210|consen 166 TRRGLRPKN----------KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFS 235 (285)
T ss_pred ccccccccc----------hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhh
Confidence 444321110 0001122223344459999999999999999999999999999764 689999999
Q ss_pred CHHHHHHHHHHhCCceeCCceeEEeeccCCCCC
Q 015468 319 NRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNK 351 (406)
Q Consensus 319 ~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 351 (406)
+...+..++.. ....+.++.+.+++..+....
T Consensus 236 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 236 AGNSKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hchhHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 99999999987 888899999999998876443
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.14 E-value=9.2e-10 Score=104.07 Aligned_cols=174 Identities=14% Similarity=0.091 Sum_probs=119.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcc
Q 015468 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (406)
Q Consensus 167 ~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 246 (406)
+.+-+.+.+++.++.|++++|... .|..+.|..+...+...|.++|.|....++.+|+.. +...+-.|.+.+.....
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~--~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGR--NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred heeeecccccccccchhhhhcCcc--cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 456677888999999999999753 455566666654455578999999999999999843 55555666666654433
Q ss_pred ccccccccc--------ccccc----------CCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEE-EEee
Q 015468 247 KKAATGQQY--------QKATY----------QNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVH-VKIP 307 (406)
Q Consensus 247 ~~~~~~~~~--------~~~~~----------~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~-v~i~ 307 (406)
......... ....+ ...............+|||..||..+++.++.++|...-.|++ |.|.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 221111000 00000 0000112234456688999999999999999999998878887 6664
Q ss_pred CC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 308 AG-----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 308 ~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
+. ++.|||.|...+++.+|+..-+..-++.+.|+|.
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 32 6789999999888888887655556777788885
No 123
>smart00361 RRM_1 RNA recognition motif.
Probab=99.13 E-value=1.3e-10 Score=81.16 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=51.6
Q ss_pred HHHHHHHhc----ccCCeeEEE-EEecCCC--CCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 015468 87 ESYIASIFG----HTGEFVSGK-VIRNKQT--NFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (406)
Q Consensus 87 ~~~l~~~f~----~~G~v~~~~-i~~~~~~--g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 145 (406)
+++|+++|+ .||.|.+|. ++.++.+ +.++|+|||+|.+.++|.+|++.|||..+.++.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l 67 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTV 67 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 578888888 999999996 7766666 8899999999999999999999999999976543
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.6e-11 Score=118.73 Aligned_cols=150 Identities=15% Similarity=0.224 Sum_probs=129.3
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
....++||+||+..+.+++|...|..+|.+..+.+....+.++.+|+|||+|..++++.+|+.-.+++.+.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 34568999999999999999999999999888777766677889999999999999999999855555442
Q ss_pred ccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 015468 151 WATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230 (406)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 230 (406)
...|+|.|+|+..|.++++.++.+ +|.+.+++++.. ..|+++|.++|.|.++.++.+++...+
T Consensus 736 ---------------K~~v~i~g~pf~gt~e~~k~l~~~-~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d 798 (881)
T KOG0128|consen 736 ---------------KISVAISGPPFQGTKEELKSLASK-TGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVD 798 (881)
T ss_pred ---------------hhhhheeCCCCCCchHHHHhhccc-cCCccccchhhh-hccccccceeccCCCcchhhhhcccch
Confidence 127999999999999999999998 999999997777 479999999999999999999998877
Q ss_pred CcccCCcceEeCcCcc
Q 015468 231 GVLCSTRPMRIGPAAT 246 (406)
Q Consensus 231 g~~~~g~~i~v~~~~~ 246 (406)
...+..+.+.|..+++
T Consensus 799 ~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 799 VAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhhcCccccccCC
Confidence 7777777777776655
No 125
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.10 E-value=4e-10 Score=94.15 Aligned_cols=171 Identities=28% Similarity=0.438 Sum_probs=131.4
Q ss_pred ceEEEeCCCCCcCHHH-H--HHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 74 RSLWIGDLQPWMEESY-I--ASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~-l--~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
-.+++.++-.++..+- | ...|+.+-.+...+++++. -+..++++|+.|+....-.++-..-+++.+.. ..|++.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~--~~VR~a 173 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGK--PPVRLA 173 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccC--cceeec
Confidence 3466777766665554 3 6778877777777887774 46678999999988877777766666666632 235554
Q ss_pred ccccCCCC-CcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 015468 151 WATYGAGE-RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM 229 (406)
Q Consensus 151 ~~~~~~~~-~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 229 (406)
........ .........+||.+.|..+++++.|...|.+ |-.....++++|..+++++||+||.|.+.+++..|+.++
T Consensus 174 ~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~K-fpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 174 AGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKK-FPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cccccCCcccccCccccceeecccccccccHHHHHHHHHh-ccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 43332211 1123344568999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cCcccCCcceEeCcCcccc
Q 015468 230 NGVLCSTRPMRIGPAATKK 248 (406)
Q Consensus 230 ~g~~~~g~~i~v~~~~~~~ 248 (406)
+|+.++.+.|++..+..+.
T Consensus 253 ~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred cccccccchhHhhhhhHHh
Confidence 9999999999887665543
No 126
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=2.2e-10 Score=76.23 Aligned_cols=56 Identities=25% Similarity=0.588 Sum_probs=50.3
Q ss_pred HHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 183 l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
|+++|++ ||.|.++.+..+. +++|||+|.+.++|..|++.||+..+.|+.|+|.|+
T Consensus 1 L~~~f~~-fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSK-FGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTT-TS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCC-cccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789998 9999999997663 589999999999999999999999999999999875
No 127
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.07 E-value=2.3e-10 Score=109.57 Aligned_cols=108 Identities=23% Similarity=0.366 Sum_probs=82.4
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceeccc
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~ 152 (406)
++||||++|+..++|.||..+|+.||.|.+|.++. ++++|||++....+|.+|+.+|++..+ ..+.|++.|+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccc--cceeeEEeee
Confidence 57899999999999999999999999999999987 589999999999999999999997777 5788888998
Q ss_pred ccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHH
Q 015468 153 TYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188 (406)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 188 (406)
........-...-...|=|.-||++.-.++|+.+++
T Consensus 493 ~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 493 VGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred ccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 754333211111111233445677655555666665
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=2.4e-10 Score=111.11 Aligned_cols=166 Identities=22% Similarity=0.391 Sum_probs=141.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
++...+.+||++||...+++.+|+..|.. +|.|..|.|.... -+.-.-++||.|.+...+..|+..+.+..|..-.++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e-~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDE-SGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhh-hccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 44456789999999999999999999998 9999999887763 344456899999999999999988888887766666
Q ss_pred eCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCH
Q 015468 241 IGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320 (406)
Q Consensus 241 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~ 320 (406)
+.+...+. ...+.+|+++|..-+....|...|..||.|..|.+-....+++|.+++.
T Consensus 445 ~glG~~ks-----------------------t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~ 501 (975)
T KOG0112|consen 445 IGLGQPKS-----------------------TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESP 501 (975)
T ss_pred cccccccc-----------------------ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccC
Confidence 66654422 2346799999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHhCCceeCC--ceeEEeeccCCCCC
Q 015468 321 TCAEQALSVLNGTQLGG--QSIRLSWGRSPSNK 351 (406)
Q Consensus 321 ~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~~~ 351 (406)
..|..|+..|.+..|++ +.++|.|+......
T Consensus 502 ~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 502 PAAQAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred ccchhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 99999999999999986 68999999876543
No 129
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.98 E-value=1.5e-09 Score=88.19 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=69.1
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhccc-CCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHT-GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
....-.++|..+|.-+.+.++..+|..+ |.|..+++-+++.||.++|||||+|++.+.|+-|-+.||+..|.+.-+.++
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445569999999999999999999999 778888888999999999999999999999999999999999976444333
No 130
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=9.9e-10 Score=95.90 Aligned_cols=80 Identities=24% Similarity=0.386 Sum_probs=72.3
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
..+...|||..|.+-+|+++|+-+|+.||.|.+|.|+++..+|.+..||||+|++.++.++|.-.|++..|..+.+.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999765444433
No 131
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=1.4e-09 Score=100.87 Aligned_cols=178 Identities=17% Similarity=0.211 Sum_probs=118.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
..+.+..+|+|-|||.++++++|..+|+. ||+|+.|+.... .+|.+||+|.|..+|++|+++|++.++.|+.|.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~-yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGA-YGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHh-hcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 33556679999999999999999999997 999999755444 588999999999999999999999999999888
Q ss_pred eCcCcccccccccc--ccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeC
Q 015468 241 IGPAATKKAATGQQ--YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFA 318 (406)
Q Consensus 241 v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~ 318 (406)
.............. ..................... + ++.|+...+..-++..|.-+|.+..-+...-+.--|++|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~-~-~g~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~hq~~~~~~ 221 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQ-L-FGMLSPTRSSILLEHISSVDGSSPGRETPLLNHQRFVEFA 221 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCcCCc-c-eeeeccchhhhhhhcchhccCccccccccchhhhhhhhhc
Confidence 33322221111110 000001111111222222222 2 2238888887667777777777665222222335688898
Q ss_pred CHHHHHHHHHHhCCceeCCceeEEeeccC
Q 015468 319 NRTCAEQALSVLNGTQLGGQSIRLSWGRS 347 (406)
Q Consensus 319 ~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 347 (406)
+..++..++..+ |..+.+....+.+..+
T Consensus 222 ~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 222 DNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred cccchhhcccCC-ceecCCCCceEEecCC
Confidence 888887776654 6677777766666665
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.91 E-value=3.1e-09 Score=98.38 Aligned_cols=79 Identities=24% Similarity=0.455 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
...++.|||.+|...+...+|+++|++||+|+-.+++.+ +.|+||++.+.++|.+||..|+-++|.|+.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 445688999999999999999999999999999888765 78999999999999999999999999999999999
Q ss_pred ccCCC
Q 015468 345 GRSPS 349 (406)
Q Consensus 345 ~~~~~ 349 (406)
+++..
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 88654
No 133
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.1e-09 Score=93.86 Aligned_cols=86 Identities=24% Similarity=0.417 Sum_probs=80.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
..+.+.|||..|.+-++.++|.-+|+. ||.|.+|.|++|..+|.+--||||+|.+.+++++|.-.|+...|+.+.|.|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSr-FG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSR-FGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhh-cccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 356779999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred cCccccc
Q 015468 243 PAATKKA 249 (406)
Q Consensus 243 ~~~~~~~ 249 (406)
|+..-..
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9866443
No 134
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.91 E-value=4.9e-09 Score=85.27 Aligned_cols=86 Identities=20% Similarity=0.304 Sum_probs=76.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
.......+++..++..+.+.++..+|.+.+|.|..+++-++..||.++|||||+|++.+.|+-|.+.||+..+.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 33445579999999999999999999983378888888899999999999999999999999999999999999999999
Q ss_pred CcCccc
Q 015468 242 GPAATK 247 (406)
Q Consensus 242 ~~~~~~ 247 (406)
.+..+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 887665
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=1.3e-09 Score=106.23 Aligned_cols=166 Identities=15% Similarity=0.268 Sum_probs=137.1
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
.....++|||++||+..+++.+|+..|..+|.|.+|.|-+.. -+....|+||.|.+...+-.|+..+.+..|....+.+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 334567899999999999999999999999999999987653 4556779999999999999999999998887665555
Q ss_pred eecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015468 148 RLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (406)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 227 (406)
.+... ....++.+++++|..++....|...|.. ||.|..|.+... --|++|.|.+...+.+|+.
T Consensus 446 glG~~---------kst~ttr~~sgglg~w~p~~~l~r~fd~-fGpir~Idy~hg------q~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 446 GLGQP---------KSTPTTRLQSGGLGPWSPVSRLNREFDR-FGPIRIIDYRHG------QPYAYIQYESPPAAQAATH 509 (975)
T ss_pred ccccc---------ccccceeeccCCCCCCChHHHHHHHhhc-cCcceeeecccC------CcceeeecccCccchhhHH
Confidence 44421 2334558999999999999999999998 999998876543 4599999999999999999
Q ss_pred HhcCcccCC--cceEeCcCcccccc
Q 015468 228 EMNGVLCST--RPMRIGPAATKKAA 250 (406)
Q Consensus 228 ~l~g~~~~g--~~i~v~~~~~~~~~ 250 (406)
.+.+..+++ +.++|.++......
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HHhcCcCCCCCcccccccccCCCCC
Confidence 999999875 56888887765443
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.83 E-value=1.3e-08 Score=94.40 Aligned_cols=77 Identities=21% Similarity=0.413 Sum_probs=69.1
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
...+.|||.+|...+...+|+.+|++||.|+..+++.+..+.-.++|+||++.+.++|.+||..|+...|+++-+.|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 34578999999999999999999999999999999998888778999999999999999999999999997644333
No 137
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=1.6e-09 Score=88.57 Aligned_cols=138 Identities=25% Similarity=0.342 Sum_probs=110.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++|||.|+...++++.|.++|-. -|+|..|.|..+. .++.+ ||||.|.++.+..-|++.+||..+.++.+.+.+-
T Consensus 8 ~drtl~v~n~~~~v~eelL~Elfiq-aGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQ-AGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhc-cCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3459999999999999999999998 9999999988874 45556 9999999999999999999999999988876653
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeC-----CCcEEEEEeCC
Q 015468 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA-----GKRCGFVQFAN 319 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~-----~~~~afV~f~~ 319 (406)
...... -|...++++.+.+.|+.-|.++.+++.+ ++.++|+++.-
T Consensus 85 ~G~sha------------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr 134 (267)
T KOG4454|consen 85 CGNSHA------------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQR 134 (267)
T ss_pred cCCCcc------------------------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhh
Confidence 322111 1556778888999999999999988865 36789999887
Q ss_pred HHHHHHHHHHhCCcee
Q 015468 320 RTCAEQALSVLNGTQL 335 (406)
Q Consensus 320 ~~~a~~a~~~l~~~~~ 335 (406)
..+.-.++....+.+.
T Consensus 135 ~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 135 LCAVPFALDLYQGLEL 150 (267)
T ss_pred hhcCcHHhhhhcccCc
Confidence 7766777775555443
No 138
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=1.2e-08 Score=89.18 Aligned_cols=83 Identities=18% Similarity=0.372 Sum_probs=72.1
Q ss_pred CCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH-hcCcccCC
Q 015468 158 ERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE-MNGVLCST 236 (406)
Q Consensus 158 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~-l~g~~~~g 236 (406)
..+..+..-.+|||++|...+++.+|+++|.+ ||+|++++++.. +++|||+|.+.++|+.|.++ ++...|.|
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyq-yGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G 292 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQ-YGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVING 292 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhh-cCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecc
Confidence 44455566679999999999999999999999 999999999876 56999999999999998866 56677899
Q ss_pred cceEeCcCccc
Q 015468 237 RPMRIGPAATK 247 (406)
Q Consensus 237 ~~i~v~~~~~~ 247 (406)
..|.|.|..++
T Consensus 293 ~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 293 FRLKIKWGRPK 303 (377)
T ss_pred eEEEEEeCCCc
Confidence 99999999883
No 139
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.80 E-value=5.5e-09 Score=87.43 Aligned_cols=145 Identities=26% Similarity=0.411 Sum_probs=104.8
Q ss_pred HHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccccccccccccccccCCC
Q 015468 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNT 263 (406)
Q Consensus 184 ~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~ 263 (406)
...|+. +-.+....++++. -+..++++|+.|.....-.++-..-+++.+..+.|++.....-...
T Consensus 117 ~~~f~~-~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedP------------- 181 (290)
T KOG0226|consen 117 PVVFSE-YPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDP------------- 181 (290)
T ss_pred hhhhcc-chhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCc-------------
Confidence 344443 5555555666653 4566789999998877666666555666676666655443332211
Q ss_pred CCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 015468 264 QGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA------GKRCGFVQFANRTCAEQALSVLNGTQLGG 337 (406)
Q Consensus 264 ~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~------~~~~afV~f~~~~~a~~a~~~l~~~~~~g 337 (406)
+..+-.....+||.+.|..+++++.|-..|.+|-.....++.+ .+|++||.|.|..++.+|++.|+|+-++.
T Consensus 182 --sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs 259 (290)
T KOG0226|consen 182 --SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS 259 (290)
T ss_pred --ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc
Confidence 1223445668899999999999999999999997655555554 47999999999999999999999999999
Q ss_pred ceeEEeec
Q 015468 338 QSIRLSWG 345 (406)
Q Consensus 338 ~~l~v~~~ 345 (406)
+.|.+.-.
T Consensus 260 rpiklRkS 267 (290)
T KOG0226|consen 260 RPIKLRKS 267 (290)
T ss_pred chhHhhhh
Confidence 98877543
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.72 E-value=1e-07 Score=69.73 Aligned_cols=80 Identities=20% Similarity=0.369 Sum_probs=66.9
Q ss_pred ceEEEeCCCCCcCHHHHHHHhccc--CCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC--Ccccee
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHT--GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST--EQNFRL 149 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~--G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~--~~~v~~ 149 (406)
+||+|+|||...|.++|.+++... |...-+.++.|..++.+.|||||.|.+.+.|....+.++|..+... .+...+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999888654 5577788888888888999999999999999999999999988643 444455
Q ss_pred cccc
Q 015468 150 NWAT 153 (406)
Q Consensus 150 ~~~~ 153 (406)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5554
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.68 E-value=8.2e-08 Score=89.15 Aligned_cols=64 Identities=17% Similarity=0.332 Sum_probs=55.5
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHh
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 135 (406)
...+|||+|||.+++.++|+++|..||.|+...|......++..+||||+|.+.+++..|+.+-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 3455999999999999999999999999999998775434555699999999999999999844
No 142
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.64 E-value=6.9e-08 Score=91.96 Aligned_cols=85 Identities=41% Similarity=0.790 Sum_probs=76.0
Q ss_pred CCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEee---------CCCcEEEEEeCCHHHHHHHHHHhCCcee
Q 015468 265 GSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP---------AGKRCGFVQFANRTCAEQALSVLNGTQL 335 (406)
Q Consensus 265 ~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~---------~~~~~afV~f~~~~~a~~a~~~l~~~~~ 335 (406)
++....++..+.|||+||+..++++.|...|..||.|..|+|+ +++.|+||.|.+..+|.+|++.|+|..+
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 3445567788999999999999999999999999999999886 3478999999999999999999999999
Q ss_pred CCceeEEeeccCCC
Q 015468 336 GGQSIRLSWGRSPS 349 (406)
Q Consensus 336 ~g~~l~v~~~~~~~ 349 (406)
.+..+++-|++.-.
T Consensus 245 ~~~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 245 MEYEMKLGWGKAVP 258 (877)
T ss_pred eeeeeeeccccccc
Confidence 99999999997543
No 143
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.62 E-value=2.5e-08 Score=88.46 Aligned_cols=209 Identities=14% Similarity=0.168 Sum_probs=125.9
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCC---CCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQ---TNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
...|-|.||.+++|.+.++.||...|.|.++.++.+.. .......|||.|.|...+..|-. |.+..+.++
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdr------ 79 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDR------ 79 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeee------
Confidence 34799999999999999999999999999999987432 23456789999999999999987 544443221
Q ss_pred cccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 015468 150 NWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM 229 (406)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 229 (406)
.|+|...+..+..+.. +|.. ++.-..|--+. ..
T Consensus 80 ------------------aliv~p~~~~~~p~r~--af~~-l~~~navprll--------------------------~p 112 (479)
T KOG4676|consen 80 ------------------ALIVRPYGDEVIPDRF--AFVE-LADQNAVPRLL--------------------------PP 112 (479)
T ss_pred ------------------eEEEEecCCCCCccHH--HHHh-cCccccccccc--------------------------CC
Confidence 3444333333333332 4443 43322221111 11
Q ss_pred cCcccCCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeC-
Q 015468 230 NGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA- 308 (406)
Q Consensus 230 ~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~- 308 (406)
+|..+..+.+...-..+...... ...+.............+++|.+|...+...++.+.|..+|+|....+..
T Consensus 113 dg~Lp~~~~lt~~nh~p~ailkt------P~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask 186 (479)
T KOG4676|consen 113 DGVLPGDRPLTKINHSPNAILKT------PELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASK 186 (479)
T ss_pred CCccCCCCccccccCCccceecC------CCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc
Confidence 22222222222111111100000 00000000011122237799999999999999999999999998877654
Q ss_pred -CCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEE
Q 015468 309 -GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRL 342 (406)
Q Consensus 309 -~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 342 (406)
+..+|.|+|........|+. ++|.++.-...++
T Consensus 187 ~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ 220 (479)
T KOG4676|consen 187 SRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRR 220 (479)
T ss_pred CCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhh
Confidence 35678899988777777777 4777665333333
No 144
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.56 E-value=2.4e-07 Score=79.51 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=68.4
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
+..+.+|+|.|||..++++||+++|..||.+..+-+-.+ .+|++.|.|-|.|...++|+.|++.+++..+.+..+.+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 444578999999999999999999999998877777776 5789999999999999999999999999888876644443
No 145
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.55 E-value=3.3e-07 Score=78.68 Aligned_cols=85 Identities=28% Similarity=0.391 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCc
Q 015468 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 243 (406)
....+|+|.||+..++++||+++|.. |+.++.+.+..+ ..|++.|.|-|.|...++|.+|++.+++..++|+.+.+..
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~-~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAE-FGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHH-hccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 33458999999999999999999998 999998888888 4899999999999999999999999999999999998887
Q ss_pred Ccccccc
Q 015468 244 AATKKAA 250 (406)
Q Consensus 244 ~~~~~~~ 250 (406)
.......
T Consensus 159 i~~~~~~ 165 (243)
T KOG0533|consen 159 ISSPSQS 165 (243)
T ss_pred ecCcccc
Confidence 6654433
No 146
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.54 E-value=2.4e-07 Score=69.61 Aligned_cols=70 Identities=26% Similarity=0.494 Sum_probs=47.2
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCc-----eeCCceeEEee
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGT-----QLGGQSIRLSW 344 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~-----~~~g~~l~v~~ 344 (406)
+.|+|.++...++.++|+++|+.||.|..|.+.++...|+|.|.+.++|.+|+..+... .+.+..+.++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 57899999999999999999999999999999999999999999999999999987433 56666666654
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.53 E-value=2.8e-08 Score=88.98 Aligned_cols=153 Identities=21% Similarity=0.361 Sum_probs=124.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc-ccCCcceEeCcCcc
Q 015468 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV-LCSTRPMRIGPAAT 246 (406)
Q Consensus 168 ~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~-~~~g~~i~v~~~~~ 246 (406)
.|||+||...++.++|..+|...--....-.+++ .||+||.+.+...|.+|++.++++ ++.|..+.+..+.+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 6899999999999999999986211111122222 479999999999999999999985 57899999999988
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeC-CCcE--EEEEeCCHHHH
Q 015468 247 KKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA-GKRC--GFVQFANRTCA 323 (406)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~-~~~~--afV~f~~~~~a 323 (406)
++.+. +++-|.|+|...-++.|..+...||.|+.|.... +.-. .-|+|.+.+.+
T Consensus 76 kkqrs-----------------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~ 132 (584)
T KOG2193|consen 76 KKQRS-----------------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQH 132 (584)
T ss_pred HHHHh-----------------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHH
Confidence 87665 4588999999999999999999999999987643 3222 34778899999
Q ss_pred HHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 324 EQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 324 ~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
..|+..|++..+.+..+.|.|--....
T Consensus 133 ~~ai~kl~g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 133 RQAIHKLNGPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred HHHHHhhcchHhhhhhhhcccCchhhh
Confidence 999999999999999999988655443
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.42 E-value=4.1e-07 Score=78.37 Aligned_cols=80 Identities=20% Similarity=0.415 Sum_probs=71.8
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
.-..+.+||+|+...+|.+++...|+.||.|..+.|..++..+..++|+||+|.+.+.+..|+. |++..|.+..+.+..
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4456789999999999999999999999999999999999999999999999999999999999 999999876555444
Q ss_pred c
Q 015468 150 N 150 (406)
Q Consensus 150 ~ 150 (406)
.
T Consensus 177 ~ 177 (231)
T KOG4209|consen 177 K 177 (231)
T ss_pred e
Confidence 3
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.41 E-value=1.2e-06 Score=60.81 Aligned_cols=71 Identities=18% Similarity=0.366 Sum_probs=47.9
Q ss_pred ceEEEcCCCccCcHHHH----HhhhccC-CceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 275 TTIFVGGLDPSVTDDIL----KTVFGQY-GELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l----~~~f~~~-G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
..|+|.|||.+.+...| +.++..+ |.|..|. .+.|+|.|.+.+.|.+|.+.|+|..+-|+.|.|++....+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r 78 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNR 78 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcc
Confidence 46999999998877664 5555666 4677662 5899999999999999999999999999999999986443
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.38 E-value=1.5e-06 Score=83.13 Aligned_cols=85 Identities=26% Similarity=0.577 Sum_probs=71.0
Q ss_pred CCCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCC---CCccceEEEEEcCHHHHHHHHHHhCCCCCCCC
Q 015468 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT---NFSEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (406)
Q Consensus 67 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 143 (406)
...+.....|||+||++.++++.|...|..||+|.+++|+..+.. -+.+.++||-|-+..+|++|++.|+|..+..
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~- 246 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME- 246 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee-
Confidence 344566778999999999999999999999999999999886532 3457899999999999999999999998854
Q ss_pred Cccceecccc
Q 015468 144 EQNFRLNWAT 153 (406)
Q Consensus 144 ~~~v~~~~~~ 153 (406)
..+++.|+.
T Consensus 247 -~e~K~gWgk 255 (877)
T KOG0151|consen 247 -YEMKLGWGK 255 (877)
T ss_pred -eeeeecccc
Confidence 555566653
No 151
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.38 E-value=3.9e-06 Score=61.44 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=66.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhh-CCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC----CcceEe
Q 015468 167 FTIFVGDLAADVTDYVLQETFRAV-YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS----TRPMRI 241 (406)
Q Consensus 167 ~~l~v~~l~~~~~~~~l~~~f~~~-~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~----g~~i~v 241 (406)
+||.|+|||...|.++|.+++... .|...-+.++.|..++.+.|||||.|.+.+.|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 489999999999999999999864 366777888889888999999999999999999999999998764 344455
Q ss_pred CcCc
Q 015468 242 GPAA 245 (406)
Q Consensus 242 ~~~~ 245 (406)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5553
No 152
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.32 E-value=8.1e-07 Score=76.56 Aligned_cols=85 Identities=18% Similarity=0.290 Sum_probs=76.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
........+||+|+.+.++.+++..+|+. +|.|..+.+..|...+.++||+||+|.+.+.+..++. |++..+.++.+.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeec-cCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 34455668999999999999999999997 9999999999999888999999999999999999996 999999999999
Q ss_pred eCcCccc
Q 015468 241 IGPAATK 247 (406)
Q Consensus 241 v~~~~~~ 247 (406)
|.+....
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9876554
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.21 E-value=7.6e-06 Score=72.68 Aligned_cols=85 Identities=26% Similarity=0.349 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEE--------EEeeC------CCcEEEEEeCCHHHHHHHHHHhCCceeC
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVH--------VKIPA------GKRCGFVQFANRTCAEQALSVLNGTQLG 336 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~--------v~i~~------~~~~afV~f~~~~~a~~a~~~l~~~~~~ 336 (406)
.....+|||-+|+..+++++|.++|..+|.|.. |.|-+ .|+.|.|+|+|...|+.|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455678999999999999999999999988743 22322 3789999999999999999999999999
Q ss_pred CceeEEeeccCCCCCCCCC
Q 015468 337 GQSIRLSWGRSPSNKQSDQ 355 (406)
Q Consensus 337 g~~l~v~~~~~~~~~~~~~ 355 (406)
+..|+|.+|..+......+
T Consensus 143 gn~ikvs~a~~r~~ve~~r 161 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGVESVR 161 (351)
T ss_pred CCCchhhhhhhccCccccc
Confidence 9999999999877544333
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.10 E-value=1.7e-05 Score=55.12 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=46.6
Q ss_pred eEEEcCCCCCCCHHHHHHHH----HhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCc
Q 015468 168 TIFVGDLAADVTDYVLQETF----RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (406)
Q Consensus 168 ~l~v~~l~~~~~~~~l~~~f----~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 243 (406)
.|+|.|||.+.+...|+.-+ ..+.|.|..| +.+.|+|.|.+.+.|.+|.+.|+|..+.|+.|.|.+
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 68999999999877665544 4545555554 246799999999999999999999999999999998
Q ss_pred Ccccc
Q 015468 244 AATKK 248 (406)
Q Consensus 244 ~~~~~ 248 (406)
.....
T Consensus 74 ~~~~r 78 (90)
T PF11608_consen 74 SPKNR 78 (90)
T ss_dssp S--S-
T ss_pred cCCcc
Confidence 75443
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.09 E-value=5e-07 Score=81.17 Aligned_cols=154 Identities=18% Similarity=0.340 Sum_probs=113.9
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCC-CCCCCccceeccc
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQ-MPSTEQNFRLNWA 152 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~-~~~~~~~v~~~~~ 152 (406)
..|||+||.+.++.++|+.+|...-.-.+-.++. ..+|+||.+.+..-|.+|++.++++. +.+. ...+..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGk--r~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGK--RQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCc--eeeccch
Confidence 3589999999999999999998652211111121 25899999999999999999999874 4443 3333332
Q ss_pred ccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 015468 153 TYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV 232 (406)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~ 232 (406)
-.. ...++.+-|+|+|.....+.|-.++.. ||.++.|...... .-.-..-|+|.+.+.+..|+..+++.
T Consensus 74 v~k-------kqrsrk~Qirnippql~wevld~Ll~q-yg~ve~~eqvnt~---~etavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 74 VPK-------KQRSRKIQIRNIPPQLQWEVLDSLLAQ-YGTVENCEQVNTD---SETAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred hhH-------HHHhhhhhHhcCCHHHHHHHHHHHHhc-cCCHhHhhhhccc---hHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 211 111236889999999999999999998 9999998764321 11223347899999999999999999
Q ss_pred ccCCcceEeCcCcc
Q 015468 233 LCSTRPMRIGPAAT 246 (406)
Q Consensus 233 ~~~g~~i~v~~~~~ 246 (406)
.+....+.+.|.-.
T Consensus 143 Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 143 QLENQHLKVGYIPD 156 (584)
T ss_pred HhhhhhhhcccCch
Confidence 99999999887644
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.01 E-value=1.4e-05 Score=51.78 Aligned_cols=52 Identities=29% Similarity=0.559 Sum_probs=44.2
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHH
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQAL 327 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~ 327 (406)
+.|-|.|.+.+..+ .|..+|..||+|.++.+.....+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 45778888876554 46669999999999999988899999999999999985
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.00 E-value=1.5e-05 Score=70.82 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=68.7
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCee--------EEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCC
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFV--------SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQ 139 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 139 (406)
.......+|||-+||..+++++|.++|.++|.|. .|+|.+++.|++.|+-|.|.|.|...|+.|+.-++++.
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 3356667899999999999999999999999874 58888999999999999999999999999999999999
Q ss_pred CCCC
Q 015468 140 MPST 143 (406)
Q Consensus 140 ~~~~ 143 (406)
+.+.
T Consensus 141 f~gn 144 (351)
T KOG1995|consen 141 FCGN 144 (351)
T ss_pred ccCC
Confidence 9873
No 158
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.87 E-value=6.8e-05 Score=55.37 Aligned_cols=70 Identities=26% Similarity=0.392 Sum_probs=53.1
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEE-------------eeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCc-ee
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVK-------------IPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQ-SI 340 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~-------------i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~-~l 340 (406)
+-|.|-+.|.. ..+.|.++|++||.|.+.. +..+.++.-|+|++..+|.+||.. ||..|.|. .+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence 55888899888 4556888999999998875 566788999999999999999996 99999986 45
Q ss_pred EEeecc
Q 015468 341 RLSWGR 346 (406)
Q Consensus 341 ~v~~~~ 346 (406)
-|.+.+
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 566664
No 159
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.84 E-value=4.6e-05 Score=57.26 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=39.5
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCC
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGT 138 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 138 (406)
+.|.|.++..+++.++|+++|+.||.|..|.+.+. ...|||.|.+.++|..|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 46899999999999999999999999988888764 357999999999999999876654
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.81 E-value=5e-05 Score=49.19 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=43.7
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHH
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 132 (406)
+++|-|.|.+.+..+ +|..+|..||+|+++.+.. ...+.||+|.+..+|+.|+
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 367999999998654 5555888999999988763 3668999999999999985
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.78 E-value=5.5e-05 Score=68.64 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=60.0
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-------------------CcEEEEEeCCHHHHHHHHHH
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-------------------KRCGFVQFANRTCAEQALSV 329 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-------------------~~~afV~f~~~~~a~~a~~~ 329 (406)
.....+++|.+.|||.+-+-+.|.++|+.+|.|..|+|... +-+|+|+|++.+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34457789999999999888999999999999999999642 34799999999999999998
Q ss_pred hCCceeCCceeEE
Q 015468 330 LNGTQLGGQSIRL 342 (406)
Q Consensus 330 l~~~~~~g~~l~v 342 (406)
|+....+-..|+|
T Consensus 306 ~~~e~~wr~glkv 318 (484)
T KOG1855|consen 306 LNPEQNWRMGLKV 318 (484)
T ss_pred hchhhhhhhcchh
Confidence 7655444333333
No 162
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.78 E-value=4e-05 Score=67.45 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=68.6
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCC--eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGE--FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~--v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 146 (406)
.....-++||+||-|.+|++||.+.+...|. +.++++..++.+|.+||||+|..-+..+.++.++.|-.+.|++..-.
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 3444557999999999999999999988776 78899999999999999999999999999999999999888876444
Q ss_pred c
Q 015468 147 F 147 (406)
Q Consensus 147 v 147 (406)
|
T Consensus 156 V 156 (498)
T KOG4849|consen 156 V 156 (498)
T ss_pred e
Confidence 3
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.68 E-value=0.00012 Score=62.09 Aligned_cols=91 Identities=18% Similarity=0.347 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCC
Q 015468 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT 204 (406)
Q Consensus 125 ~~~A~~A~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~ 204 (406)
..-|+.|..+|+++...++ .+++.++.. ..|+|.||...++.+.+.+.|+. ||+|+..++..| .
T Consensus 4 rt~ae~ak~eLd~~~~~~~--~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~~-fg~~e~av~~vD-~ 67 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGR--SLRVRFAMH------------AELYVVNLMQGASNDLLEQAFRR-FGPIERAVAKVD-D 67 (275)
T ss_pred ccHHHHHHHhcCCCCCCCC--ceEEEeecc------------ceEEEEecchhhhhHHHHHhhhh-cCccchheeeec-c
Confidence 3457778888999999654 455555543 17999999999999999999997 999999888887 4
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhcC
Q 015468 205 TGRSKGYGFVRFGDESEQLRSMTEMNG 231 (406)
Q Consensus 205 ~~~~~g~~fv~f~~~~~a~~a~~~l~g 231 (406)
.++..+-++|.|...-.|.+|+..+..
T Consensus 68 r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 68 RGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred cccccccchhhhhcchhHHHHHHHhcc
Confidence 688888999999999999999988743
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.63 E-value=0.00012 Score=64.34 Aligned_cols=74 Identities=22% Similarity=0.562 Sum_probs=61.3
Q ss_pred ceEEEcCCCccCcHHH----H--HhhhccCCceEEEEeeCCC-------c--EEEEEeCCHHHHHHHHHHhCCceeCCce
Q 015468 275 TTIFVGGLDPSVTDDI----L--KTVFGQYGELVHVKIPAGK-------R--CGFVQFANRTCAEQALSVLNGTQLGGQS 339 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~----l--~~~f~~~G~v~~v~i~~~~-------~--~afV~f~~~~~a~~a~~~l~~~~~~g~~ 339 (406)
..+||-+|+..+-.|+ | .++|..||.|..|.|.+.. + -.||+|.+.|+|.+||.+++|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 5689999998876665 3 4689999999999886531 2 2399999999999999999999999999
Q ss_pred eEEeeccCC
Q 015468 340 IRLSWGRSP 348 (406)
Q Consensus 340 l~v~~~~~~ 348 (406)
|+..|...+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999987643
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.59 E-value=0.0005 Score=58.40 Aligned_cols=99 Identities=20% Similarity=0.321 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCcccCCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCC
Q 015468 220 SEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYG 299 (406)
Q Consensus 220 ~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G 299 (406)
.-|+.|..+|++....++.++|.|+.. ..|+|.||...++.+.|.+.|+.||
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~----------------------------a~l~V~nl~~~~sndll~~~f~~fg 56 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH----------------------------AELYVVNLMQGASNDLLEQAFRRFG 56 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc----------------------------ceEEEEecchhhhhHHHHHhhhhcC
Confidence 456778888999999999999999876 2399999999999999999999999
Q ss_pred ceEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHhCCce----eCCceeEEeecc
Q 015468 300 ELVHVKIPAG-----KRCGFVQFANRTCAEQALSVLNGTQ----LGGQSIRLSWGR 346 (406)
Q Consensus 300 ~v~~v~i~~~-----~~~afV~f~~~~~a~~a~~~l~~~~----~~g~~l~v~~~~ 346 (406)
.|+...+..| .+.++|+|...-.|.+|+..++..- ..++.+-|.-..
T Consensus 57 ~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 57 PIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred ccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 9987554432 4578999999999999998874443 344555555443
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.55 E-value=8.6e-05 Score=67.41 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=57.6
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEec---CCCCC----------ccceEEEEEcCHHHHHHHHHHhC
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRN---KQTNF----------SEGYGFIEFVSHAAAERVLQTFN 136 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~---~~~g~----------~~g~afV~f~~~~~A~~A~~~l~ 136 (406)
+-.+++|.+-|||.+-..+.|.++|..+|.|..|+|+.. +.+++ .+-+|+|+|+..+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346899999999999989999999999999999999886 33321 24579999999999999999765
Q ss_pred C
Q 015468 137 G 137 (406)
Q Consensus 137 ~ 137 (406)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 167
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.50 E-value=0.00049 Score=60.55 Aligned_cols=80 Identities=19% Similarity=0.348 Sum_probs=63.6
Q ss_pred eEEEcCCCCCCCHHHH------HHHHHhhCCCccEEEEEecCCC-CCcceE--EEEEeCCHHHHHHHHHHhcCcccCCcc
Q 015468 168 TIFVGDLAADVTDYVL------QETFRAVYSSVKGAKVVTDRTT-GRSKGY--GFVRFGDESEQLRSMTEMNGVLCSTRP 238 (406)
Q Consensus 168 ~l~v~~l~~~~~~~~l------~~~f~~~~g~i~~~~~~~~~~~-~~~~g~--~fv~f~~~~~a~~a~~~l~g~~~~g~~ 238 (406)
-+||-+|+..+..+++ .++|.+ ||.|..|.+.+...+ ....+. .||+|.+.|+|.+||.+.+|..++||.
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQ-yGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQ-YGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhh-ccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 5789999988776652 578988 999999988765311 112222 489999999999999999999999999
Q ss_pred eEeCcCcccc
Q 015468 239 MRIGPAATKK 248 (406)
Q Consensus 239 i~v~~~~~~~ 248 (406)
|+..+...+-
T Consensus 195 lkatYGTTKY 204 (480)
T COG5175 195 LKATYGTTKY 204 (480)
T ss_pred EeeecCchHH
Confidence 9999987653
No 168
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.47 E-value=0.00014 Score=64.13 Aligned_cols=77 Identities=19% Similarity=0.304 Sum_probs=66.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCC--CccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYS--SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
...++||+||-|++|++||.+.+.. .| .+.+++++.++.+|.+||||+|...+..+.++.++-|-.++|.|..-.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S-~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQS-TGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHh-hhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3447999999999999999999986 55 46677888888899999999999999999999999998888888765553
No 169
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.43 E-value=0.00026 Score=61.05 Aligned_cols=60 Identities=27% Similarity=0.307 Sum_probs=50.8
Q ss_pred cHHHHHhhhccCCceEEEEeeCCC-------cEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 287 TDDILKTVFGQYGELVHVKIPAGK-------RCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 287 ~~~~l~~~f~~~G~v~~v~i~~~~-------~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
-++++++.+++||.|..|.|.... --.||+|+..++|.+|+..|||+.|+||.+...|-.
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 456789999999999998886542 246999999999999999999999999988776543
No 170
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.41 E-value=0.00013 Score=61.77 Aligned_cols=71 Identities=18% Similarity=0.385 Sum_probs=60.3
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCC--------CCcc----ceEEEEEcCHHHHHHHHHHhCCCCCC
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT--------NFSE----GYGFIEFVSHAAAERVLQTFNGTQMP 141 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~--------g~~~----g~afV~f~~~~~A~~A~~~l~~~~~~ 141 (406)
-.||+++||+.+.-..|+++|+.||.|-.|.+.....+ |.++ .-++|+|.+...|..+...||+..|.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 46999999999999999999999999999998775443 2222 23789999999999999999999998
Q ss_pred CCC
Q 015468 142 STE 144 (406)
Q Consensus 142 ~~~ 144 (406)
+..
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 753
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.40 E-value=0.00099 Score=52.27 Aligned_cols=75 Identities=32% Similarity=0.473 Sum_probs=52.5
Q ss_pred CCCCceEEEcCCC-----ccCcH----HHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeE
Q 015468 271 DPNNTTIFVGGLD-----PSVTD----DILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIR 341 (406)
Q Consensus 271 ~~~~~~l~v~~l~-----~~~~~----~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 341 (406)
.++..+|.|.=+. ...-+ .+|.+.|..||+|.=|++..+ .-+|+|.+-+.|.+|+. |+|.+++|+.|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--TMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--CEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--eEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 4455666665444 11222 367788999999988888764 78999999999999999 799999999999
Q ss_pred EeeccCC
Q 015468 342 LSWGRSP 348 (406)
Q Consensus 342 v~~~~~~ 348 (406)
|+...+.
T Consensus 101 i~LKtpd 107 (146)
T PF08952_consen 101 IRLKTPD 107 (146)
T ss_dssp EEE----
T ss_pred EEeCCcc
Confidence 9877653
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.00061 Score=64.15 Aligned_cols=78 Identities=15% Similarity=0.296 Sum_probs=62.6
Q ss_pred CCCCceEEEeCCCCCc------CHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC
Q 015468 70 SDGIRSLWIGDLQPWM------EESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~------t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 143 (406)
+.....|+|.|+|--- -..-|..+|+++|+++.+.++.+...| ++||.|++|.+..+|..|++.|||+.|.-
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk- 132 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK- 132 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc-
Confidence 3556789999999632 123366899999999999999886555 99999999999999999999999999863
Q ss_pred Ccccee
Q 015468 144 EQNFRL 149 (406)
Q Consensus 144 ~~~v~~ 149 (406)
++++.+
T Consensus 133 nHtf~v 138 (698)
T KOG2314|consen 133 NHTFFV 138 (698)
T ss_pred cceEEe
Confidence 455444
No 173
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.25 E-value=0.00015 Score=61.46 Aligned_cols=65 Identities=25% Similarity=0.533 Sum_probs=57.6
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCC------------------cEEEEEeCCHHHHHHHHHHhCCceeC
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGK------------------RCGFVQFANRTCAEQALSVLNGTQLG 336 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~------------------~~afV~f~~~~~a~~a~~~l~~~~~~ 336 (406)
-+||+++||..+....|+++|+.||.|-.|.+.... ..|.|+|.+-..|.++...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 579999999999999999999999999999885421 14789999999999999999999999
Q ss_pred Cce
Q 015468 337 GQS 339 (406)
Q Consensus 337 g~~ 339 (406)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 873
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.15 E-value=0.00019 Score=61.03 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=49.3
Q ss_pred HHHHhhhc-cCCceEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 289 DILKTVFG-QYGELVHVKIPAG-----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 289 ~~l~~~f~-~~G~v~~v~i~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
++|...|+ +||+|+.+.|..+ +|-++|.|...++|.+|+..||+..+.|+.|..++.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 8999999988665 6789999999999999999999999999999988644
No 175
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.07 E-value=0.00053 Score=64.94 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=70.2
Q ss_pred CCCCCCCCceEEEcCCCccCcHHHHHhhhc-cCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCcee---CCceeEE
Q 015468 267 QGENDPNNTTIFVGGLDPSVTDDILKTVFG-QYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQL---GGQSIRL 342 (406)
Q Consensus 267 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~---~g~~l~v 342 (406)
.+.....+++|+|.||-.-+|.-.|+.++. ..|.|++.+|-+-+..|||.|.+.++|.....+|||..+ +.+.|.+
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 344566789999999999999999999998 567777776666688999999999999999999999986 5688999
Q ss_pred eeccCCC
Q 015468 343 SWGRSPS 349 (406)
Q Consensus 343 ~~~~~~~ 349 (406)
.|+....
T Consensus 517 df~~~de 523 (718)
T KOG2416|consen 517 DFVRADE 523 (718)
T ss_pred eecchhH
Confidence 9887543
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.03 E-value=0.0017 Score=48.05 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=47.8
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEE-EEecC------CCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGK-VIRNK------QTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~-i~~~~------~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 142 (406)
...+.|.|-+.|++ ....|.+.|+.||.|.+.. +.++. ..-....+..|+|.++.+|.+||. .||..+.+
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g 80 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSG 80 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETT
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcC
Confidence 34567999999998 4566777899999987775 10000 001146799999999999999998 88888864
No 177
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.00 E-value=0.0027 Score=42.09 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=44.1
Q ss_pred ceEEEcCCCccCcHHHHHhhhccC---CceEEEEeeCCCcEEEEEeCCHHHHHHHHHHh
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQY---GELVHVKIPAGKRCGFVQFANRTCAEQALSVL 330 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~---G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l 330 (406)
.+|+|.|+ .+++.++|+.+|..| .....|+++.| ..|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 56999999 468889999999988 23567777765 45789999999999999865
No 178
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.98 E-value=0.011 Score=44.66 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=54.3
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCC-eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 142 (406)
...+..+.+-..|..++.++|..+.+.+-. |..++|+++.. .++-.+.++|.+.++|+.....+||+.+..
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 444555666666666777788776666644 77888888743 267789999999999999999999999853
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.95 E-value=0.00049 Score=58.61 Aligned_cols=65 Identities=14% Similarity=0.258 Sum_probs=53.3
Q ss_pred HHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcc
Q 015468 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (406)
Q Consensus 181 ~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 246 (406)
++|...|+..||+|+.++|-.+. .....|-++|.|..+++|++|++.||+.++.|++|..++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 56667777449999999776653 345688899999999999999999999999999988776533
No 180
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.88 E-value=0.0067 Score=42.43 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=44.0
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCC
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNG 137 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 137 (406)
......+|+ .|......||.++|+.||.| .|..+.+ ..|||...+.+.|..|+..+..
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 344566776 99999999999999999987 5666654 3799999999999999987753
No 181
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.87 E-value=0.0036 Score=59.07 Aligned_cols=66 Identities=15% Similarity=0.310 Sum_probs=53.4
Q ss_pred ceEEEcCCCccCcHHHHHhhhc--cCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhC--CceeCCceeE
Q 015468 275 TTIFVGGLDPSVTDDILKTVFG--QYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLN--GTQLGGQSIR 341 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~--~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~ 341 (406)
|.|.|+-|+..+.+|+++.+|+ .+-++++|++..+.+ .||+|++..+|..|.+.|. -++|.|+.|.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 6788999999999999999995 467889998876655 5999999999999998774 3346666543
No 182
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0027 Score=59.97 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=59.0
Q ss_pred ceEEEcCCCCCCC------HHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc-ce
Q 015468 167 FTIFVGDLAADVT------DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR-PM 239 (406)
Q Consensus 167 ~~l~v~~l~~~~~------~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~-~i 239 (406)
..|+|.|+|.--. ..-|.++|++ +|.|....+..+.. |.++|+.|++|.+..+|..|++.|||+.++.. +.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk-~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSK-AGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHh-hccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 4788999885322 2356788887 99999999988864 45999999999999999999999999988654 44
Q ss_pred EeC
Q 015468 240 RIG 242 (406)
Q Consensus 240 ~v~ 242 (406)
.|.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 443
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.76 E-value=0.0038 Score=54.10 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhCCCccEEEEEecCCCC-CcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcccc
Q 015468 180 DYVLQETFRAVYSSVKGAKVVTDRTTG-RSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248 (406)
Q Consensus 180 ~~~l~~~f~~~~g~i~~~~~~~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 248 (406)
++++++.+++ ||.|..|.|...+... .-..-.||+|...++|.+|+-.|||..|+||.++..|-+..+
T Consensus 300 ede~keEceK-yg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEK-YGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHh-hcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHh
Confidence 5678899998 9999999998874322 223457999999999999999999999999999887765443
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.63 E-value=0.0018 Score=61.56 Aligned_cols=80 Identities=11% Similarity=0.182 Sum_probs=63.1
Q ss_pred CCCCCCCceEEEeCCCCCcCHHHHHHHhc-ccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC-CC
Q 015468 67 DASSDGIRSLWIGDLQPWMEESYIASIFG-HTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS-TE 144 (406)
Q Consensus 67 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~-~~ 144 (406)
+.....+..|+|.||=.-.|.-.|+.++. .+|.|++.+|-+ -+..|||.|.+.++|.+.+.+|+|..+.. +.
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 33566788999999999999999999998 667787874433 46789999999999999999999987753 34
Q ss_pred ccceeccc
Q 015468 145 QNFRLNWA 152 (406)
Q Consensus 145 ~~v~~~~~ 152 (406)
+.+.+.|.
T Consensus 512 K~L~adf~ 519 (718)
T KOG2416|consen 512 KHLIADFV 519 (718)
T ss_pred ceeEeeec
Confidence 44444443
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.59 E-value=0.015 Score=38.57 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=44.2
Q ss_pred ceEEEeCCCCCcCHHHHHHHhccc----CCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHh
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHT----GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~----G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 135 (406)
..|+|+|+.. ++.++|+.+|..| + ...|..+.|. .|=|.|.|.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4699999966 8889999999999 5 4578888774 4679999999999999754
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.50 E-value=0.014 Score=45.26 Aligned_cols=75 Identities=23% Similarity=0.372 Sum_probs=56.6
Q ss_pred CCCCceEEEcCCCccC----cHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 271 DPNNTTIFVGGLDPSV----TDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~----~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
+++-.+|.|.=|..++ +-..+...++.||.|.+|.+. ++-.|.|.|.|..+|=+|+.++.. ...|..+.++|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 4445667776554443 334455667899999999764 578999999999999999999876 5677888888865
Q ss_pred C
Q 015468 347 S 347 (406)
Q Consensus 347 ~ 347 (406)
.
T Consensus 161 r 161 (166)
T PF15023_consen 161 R 161 (166)
T ss_pred c
Confidence 3
No 187
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.47 E-value=0.0038 Score=56.32 Aligned_cols=71 Identities=23% Similarity=0.373 Sum_probs=59.0
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC---------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeec
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWG 345 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~---------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 345 (406)
..|-|.||...++.+.+..+|...|+|..+.|..+ ...|||.|.|...+..|-. |.++.|-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 37999999999999999999999999999988653 4689999999888877766 6777777777666544
Q ss_pred c
Q 015468 346 R 346 (406)
Q Consensus 346 ~ 346 (406)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 188
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.41 E-value=0.0028 Score=61.23 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=59.4
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
.-++||+||...+..+-++..+..+|.|.+++... |+|++|.....+..|+..+.-..+.+..+...+.
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 35699999999999999999999999987777653 9999999999999999988888787776666664
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.33 E-value=0.023 Score=39.79 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=41.6
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCC
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNG 332 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~ 332 (406)
.+.+|. .|..+...||.++|+.||.|.--.|. ...|||...+.+.|..|+..++.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~--dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN--DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC--TTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc--CCcEEEEeecHHHHHHHHHHhcc
Confidence 455565 99999999999999999988644443 46899999999999999988753
No 190
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.12 E-value=0.016 Score=48.22 Aligned_cols=62 Identities=24% Similarity=0.353 Sum_probs=49.4
Q ss_pred cHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhC--CceeCCceeEEeeccCC
Q 015468 287 TDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLN--GTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 287 ~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~~ 348 (406)
..+.|+++|..|+.+..+.+++.-+-..|.|.+.++|.+|...|+ +..+.|..|+|-|+..-
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999999999999998889999999999999999999 99999999999998543
No 191
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.10 E-value=0.04 Score=51.00 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=60.2
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCC-eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 142 (406)
+++.|.|=.+|..+|-.||..|+..+-. |.+++|+++..- ++-.+.|+|++.++|......+||+.|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3788999999999999999999987654 899999997533 56779999999999999999999999854
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.77 E-value=0.0083 Score=49.81 Aligned_cols=72 Identities=13% Similarity=0.036 Sum_probs=45.4
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcc-cCCe---eEEEEEecC-CCC-CccceEEEEEcCHHHHHHHHHHhCCCCCCC
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGH-TGEF---VSGKVIRNK-QTN-FSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v---~~~~i~~~~-~~g-~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 142 (406)
....+|.||+||+++|++++.+.+.. ++.. ..+.-.... ... ....-|||.|.+.+++...+..++|..+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 34568999999999999999997776 5554 222211111 111 123459999999999999999999977654
No 193
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.67 E-value=0.031 Score=44.02 Aligned_cols=55 Identities=24% Similarity=0.409 Sum_probs=43.6
Q ss_pred HHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcc
Q 015468 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (406)
Q Consensus 182 ~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 246 (406)
+|.+.|.. ||++.-+++..+ .-+|+|.+-++|.+|+ .++|..+.|+.|+|....+
T Consensus 52 ~ll~~~~~-~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQ-YGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHC-CS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE---
T ss_pred HHHHHHHh-CCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCc
Confidence 67777886 998887766644 4799999999999999 8899999999999976554
No 194
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.52 E-value=0.0077 Score=55.86 Aligned_cols=73 Identities=22% Similarity=0.343 Sum_probs=60.9
Q ss_pred ceEEEcCCCccC-cHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 275 TTIFVGGLDPSV-TDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 275 ~~l~v~~l~~~~-~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
+.|-+.-.+... +.++|..+|..||+|..|.+-...-.|.|+|.+..+|-+|.. .++..|+++-|+|.|.++.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 445555555554 678899999999999999987766779999999999988877 5999999999999998873
No 195
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.46 E-value=0.093 Score=53.05 Aligned_cols=70 Identities=10% Similarity=0.154 Sum_probs=50.1
Q ss_pred eEEEc-CCCccCcHHHHHhhhccCCceEE-----EEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 276 TIFVG-GLDPSVTDDILKTVFGQYGELVH-----VKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 276 ~l~v~-~l~~~~~~~~l~~~f~~~G~v~~-----v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
.+||. +=...++..+|..++..-+.|.. |+|. ..+.||+... +.|...+..|++..+.|+.|.|+.++..
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCCC
Confidence 35542 23346788888887766555543 4444 4588999874 6688899999999999999999987643
No 196
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.46 E-value=0.2 Score=37.92 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=51.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 015468 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (406)
Q Consensus 167 ~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 235 (406)
..+.+...|..++.++|..+.+..-..|..++|++|.. .++-.+++.|.+.++|......+||+.+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34556666677777788777776445678888888742 35667899999999999999999998764
No 197
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.40 E-value=0.064 Score=47.05 Aligned_cols=73 Identities=29% Similarity=0.424 Sum_probs=57.1
Q ss_pred CceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCc-eeEEeeccCC
Q 015468 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQ-SIRLSWGRSP 348 (406)
Q Consensus 274 ~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~~~~~ 348 (406)
..=|-|.+.+..-. ..|..+|++||+|++.....+-++-.|.|.++-+|.+||.+ ||+.|+|. .|-|+-+..+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 34466667766533 45788999999999988887788999999999999999996 99999886 4455554443
No 198
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.34 E-value=0.027 Score=56.84 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=5.0
Q ss_pred CCcceEEEEEeCC
Q 015468 206 GRSKGYGFVRFGD 218 (406)
Q Consensus 206 ~~~~g~~fv~f~~ 218 (406)
|+.++|+--.|++
T Consensus 899 g~q~~~~g~kfsd 911 (1282)
T KOG0921|consen 899 GTQRKFAGNKFSD 911 (1282)
T ss_pred cchhhcccccccc
Confidence 3334444333433
No 199
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.27 E-value=0.11 Score=36.33 Aligned_cols=66 Identities=21% Similarity=0.393 Sum_probs=38.8
Q ss_pred EEEc-CCCccCcHHHHHhhhccCCc-----eEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeec
Q 015468 277 IFVG-GLDPSVTDDILKTVFGQYGE-----LVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWG 345 (406)
Q Consensus 277 l~v~-~l~~~~~~~~l~~~f~~~G~-----v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 345 (406)
+||. +--..++..+|..++...+. |-+|+|.. .++||+-.. +.|.+++..|++..+.|+.++|+.|
T Consensus 3 l~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 3 LFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4442 23356788888888866643 45666664 488999875 6789999999999999999999875
No 200
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.26 E-value=0.01 Score=58.99 Aligned_cols=76 Identities=20% Similarity=0.268 Sum_probs=65.8
Q ss_pred EEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCcee--CCceeEEeeccCCCCCC
Q 015468 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQL--GGQSIRLSWGRSPSNKQ 352 (406)
Q Consensus 277 l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~~~~~~~~~ 352 (406)
..+.|.+-..+...|..+|++||.|.+++..++-..|.|+|...+.|..|+.+|+|+++ -|-..+|.+|+.-.-..
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 44455556778888999999999999999999999999999999999999999999985 58899999999876544
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.94 E-value=0.012 Score=52.57 Aligned_cols=74 Identities=19% Similarity=0.428 Sum_probs=59.0
Q ss_pred ceEEEcCCCccCcHHHH-H--hhhccCCceEEEEeeCCC---------cEEEEEeCCHHHHHHHHHHhCCceeCCceeEE
Q 015468 275 TTIFVGGLDPSVTDDIL-K--TVFGQYGELVHVKIPAGK---------RCGFVQFANRTCAEQALSVLNGTQLGGQSIRL 342 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l-~--~~f~~~G~v~~v~i~~~~---------~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 342 (406)
..+||-+|+..+.++.+ + ++|..||.|.+|.+.++. ..++|+|+..++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45788888877654444 3 478999999999887643 24799999999999999999999999998887
Q ss_pred eeccCC
Q 015468 343 SWGRSP 348 (406)
Q Consensus 343 ~~~~~~ 348 (406)
.++..+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776654
No 202
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.93 E-value=0.84 Score=40.25 Aligned_cols=170 Identities=9% Similarity=0.138 Sum_probs=101.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecC-------CCCCcceEEEEEeCCHHHHHHHHH----Hhc
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDR-------TTGRSKGYGFVRFGDESEQLRSMT----EMN 230 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~-------~~~~~~g~~fv~f~~~~~a~~a~~----~l~ 230 (406)
+.--++.|.+.|+..+++--.+...|-+ ||+|++|.++.+. ...+......+.|-+.+.+...-. .|.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~-~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVK-FGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhc-cCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 3444567889999999999999999998 9999999999874 122344568899999987765532 232
Q ss_pred C--cccCCcceEeCcCcccccccccc-ccccccC----CCCCCCCCCCCCCceEEEcCCCccCcHHH-HHhhh---ccCC
Q 015468 231 G--VLCSTRPMRIGPAATKKAATGQQ-YQKATYQ----NTQGSQGENDPNNTTIFVGGLDPSVTDDI-LKTVF---GQYG 299 (406)
Q Consensus 231 g--~~~~g~~i~v~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~l~v~~l~~~~~~~~-l~~~f---~~~G 299 (406)
. ..+....|.+.+..-+....... ......+ ......-......+.|.|. +...+.+++ |.+.+ ..-+
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~ 168 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSN 168 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCC
Confidence 2 33566777777765433222110 0000000 0000011223344667664 334443333 33222 2223
Q ss_pred ----ceEEEEeeCC--------CcEEEEEeCCHHHHHHHHHHhCCc
Q 015468 300 ----ELVHVKIPAG--------KRCGFVQFANRTCAEQALSVLNGT 333 (406)
Q Consensus 300 ----~v~~v~i~~~--------~~~afV~f~~~~~a~~a~~~l~~~ 333 (406)
.|++|.|+.. +.+|.++|-+...|...+.-|...
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 4677777642 679999999999999988877533
No 203
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=94.67 E-value=0.064 Score=47.88 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=11.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh
Q 015468 168 TIFVGDLAADVTDYVLQETFRA 189 (406)
Q Consensus 168 ~l~v~~l~~~~~~~~l~~~f~~ 189 (406)
+|-+...|.++++-.|.+-+.+
T Consensus 151 ~L~~~k~p~Nin~~~lfe~i~~ 172 (465)
T KOG3973|consen 151 TLNFPKQPGNINEWKLFETIRQ 172 (465)
T ss_pred HcCCCCCCCCchHHHHHHHHHH
Confidence 4545555666666555444443
No 204
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.52 E-value=0.12 Score=40.14 Aligned_cols=75 Identities=11% Similarity=0.148 Sum_probs=54.1
Q ss_pred CCCCceEEEcCCCCCC----CHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 015468 163 DGPDFTIFVGDLAADV----TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~----~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 238 (406)
+.+-.+|.|+=|..++ +-..+...++. ||+|.+|.+.. +-.|.|.|.|..+|-.|+.++.. ...|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~-fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSV-FGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHh-cCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 4455577777665554 33445556665 99999997754 33699999999999999988765 667777
Q ss_pred eEeCcCcc
Q 015468 239 MRIGPAAT 246 (406)
Q Consensus 239 i~v~~~~~ 246 (406)
+.+.|-..
T Consensus 154 ~qCsWqqr 161 (166)
T PF15023_consen 154 FQCSWQQR 161 (166)
T ss_pred EEeecccc
Confidence 88777543
No 205
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.45 E-value=0.14 Score=42.56 Aligned_cols=74 Identities=11% Similarity=0.145 Sum_probs=49.7
Q ss_pred CceEEEcCCCccCcHHHHHhhhcc-CCce---EEEEeeCC--------CcEEEEEeCCHHHHHHHHHHhCCceeCCc---
Q 015468 274 NTTIFVGGLDPSVTDDILKTVFGQ-YGEL---VHVKIPAG--------KRCGFVQFANRTCAEQALSVLNGTQLGGQ--- 338 (406)
Q Consensus 274 ~~~l~v~~l~~~~~~~~l~~~f~~-~G~v---~~v~i~~~--------~~~afV~f~~~~~a~~a~~~l~~~~~~g~--- 338 (406)
..+|.|++||..+|++++.+.++. ++.. ..+.-..+ -..|+|.|.+.+++..-...++|+.|-+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 468999999999999999997776 5544 23321111 34699999999999999999999887532
Q ss_pred --eeEEeeccC
Q 015468 339 --SIRLSWGRS 347 (406)
Q Consensus 339 --~l~v~~~~~ 347 (406)
...|++|--
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 455666553
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.42 E-value=0.29 Score=45.61 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=59.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCC
Q 015468 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236 (406)
Q Consensus 166 ~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g 236 (406)
++.|+|-.+|..++..||..|+..+.-.|.++++++|... .+-..+|.|.+.++|......+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6789999999999999999999986677999999997432 34468899999999999999999988753
No 207
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.34 E-value=0.11 Score=49.53 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=47.4
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcc--cCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHh
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGH--TGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~--~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 135 (406)
...|.|+|+.||..+.+|+|+.||+. |-++.+|.+-.+. -=||+|++.+||..|.+.|
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHH
Confidence 34567899999999999999999975 6668888886642 2489999999999998754
No 208
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=94.18 E-value=0.086 Score=47.10 Aligned_cols=15 Identities=53% Similarity=0.600 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCCCC
Q 015468 389 FPGYGTYQQPGSYQQ 403 (406)
Q Consensus 389 ~~g~g~~~~~~~~~~ 403 (406)
.+|+|+|++++.|++
T Consensus 378 ~GGGggyqqp~~~~~ 392 (465)
T KOG3973|consen 378 RGGGGGYQQPQQQQQ 392 (465)
T ss_pred CCCCCCCcCchhhhh
Confidence 344455655555443
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.78 E-value=0.29 Score=33.07 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=43.1
Q ss_pred cCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEE
Q 015468 285 SVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRL 342 (406)
Q Consensus 285 ~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 342 (406)
.++-++|+..+..|+- . +|..++.-=||.|.|.++|+++....++..+-+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4688899999999852 2 33344444599999999999999999999887776654
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.45 E-value=0.046 Score=54.53 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=62.2
Q ss_pred eEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceeccccc
Q 015468 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATY 154 (406)
Q Consensus 75 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~~ 154 (406)
+..+-|.+-..+..-|..+|.+||.|.+.+.+++ -..|.|+|.+.+.|..|+++|.|+.+...+...+|.++..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3555566667788889999999999999999886 4589999999999999999999999876677777777654
No 211
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=0.61 Score=44.95 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=66.5
Q ss_pred CCCCCceEEEeCCCCC-cCHHHHHHHhccc----CCeeEEEEEecC----------CCCC--------------------
Q 015468 69 SSDGIRSLWIGDLQPW-MEESYIASIFGHT----GEFVSGKVIRNK----------QTNF-------------------- 113 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~v~~~~i~~~~----------~~g~-------------------- 113 (406)
....+++|-|-|+.|+ +..++|..+|+.| |.|.+|.|+... ..|.
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3567889999999998 8899999999876 569999997653 1121
Q ss_pred -----------------ccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceeccc
Q 015468 114 -----------------SEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (406)
Q Consensus 114 -----------------~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~ 152 (406)
..-||.|+|.+.+.|......++|..+......+-+.+-
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 124799999999999999999999999877666666543
No 212
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=4.2 Score=36.67 Aligned_cols=120 Identities=9% Similarity=0.092 Sum_probs=65.3
Q ss_pred ceEEEeCCCCCcCHHHHHH-----------HhcccCC-eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 015468 74 RSLWIGDLQPWMEESYIAS-----------IFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~-----------~f~~~G~-v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 141 (406)
++-.|=++.+--|..||+- +.+.||- ..+|.++.+.... .+.-.+......|+..|-..--.
T Consensus 64 rrAvLiGINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~s------~~~~PT~~Nir~Al~wLV~~aq~ 137 (362)
T KOG1546|consen 64 RRAVLIGINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDES------PVRIPTGKNIRRALRWLVESAQP 137 (362)
T ss_pred ceEEEEeecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCCc------ccccCcHHHHHHHHHHHHhcCCC
Confidence 3344458888888888873 4567876 5677777764321 24557888889999877554443
Q ss_pred CCCccceecccccCCCCC--cCCCCCCceEEEcCCCCC-----CCHHHHHHHHHhhCCCccEEEEEec
Q 015468 142 STEQNFRLNWATYGAGER--RQDDGPDFTIFVGDLAAD-----VTDYVLQETFRAVYSSVKGAKVVTD 202 (406)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~l~v~~l~~~-----~~~~~l~~~f~~~~g~i~~~~~~~~ 202 (406)
+..+.++ ++......+ ..++....-=.|--+..+ +++++.+.+.++ .-.=..+.++.|
T Consensus 138 gD~LvfH--YSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~p-lp~G~~lt~I~D 202 (362)
T KOG1546|consen 138 GDSLVFH--YSGHGTRQPDTNGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVRP-LPKGCKLTAISD 202 (362)
T ss_pred CCEEEEE--ecCCCCcCCCCCCCCCCCCcceeecccccccccccchHHHHHHHhc-cCCCceEEEEee
Confidence 3333333 333222221 122222221222233333 567777777776 333334445544
No 213
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.29 E-value=0.35 Score=42.57 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=50.3
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 142 (406)
...|-|-+.|+... ..|..+|++||.|++..... +-.+-+|.|.+.-+|.+||. .+|+.|.+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALs-kng~ii~g 258 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALS-KNGTIIDG 258 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhh-hcCeeecc
Confidence 56899999999754 45667899999987766542 35689999999999999998 88888865
No 214
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.18 E-value=3.6 Score=36.43 Aligned_cols=161 Identities=12% Similarity=0.161 Sum_probs=95.2
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecC-------CCCCccceEEEEEcCHHHHHHHHH----HhCC
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNK-------QTNFSEGYGFIEFVSHAAAERVLQ----TFNG 137 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~-------~~g~~~g~afV~f~~~~~A~~A~~----~l~~ 137 (406)
..-.+|.|.+.||..+++-.++...|-+||.|++|.++.+. ..-+......+-|-+.+.+..... .|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34557889999999999999999999999999999999875 112345678999999988866542 2222
Q ss_pred --CCCCCCCccceecccccCCCCCc-------------------CCCCCCceEEEcCCCCCCCHHH-HHHHH---HhhCC
Q 015468 138 --TQMPSTEQNFRLNWATYGAGERR-------------------QDDGPDFTIFVGDLAADVTDYV-LQETF---RAVYS 192 (406)
Q Consensus 138 --~~~~~~~~~v~~~~~~~~~~~~~-------------------~~~~~~~~l~v~~l~~~~~~~~-l~~~f---~~~~g 192 (406)
..+....+.+....-........ .....++.|.|-- ...+.+++ +.+.+ .. -+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~-~~ 168 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKN-SN 168 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhcc-CC
Confidence 11222222222221111110000 1112334454432 23343333 33322 21 22
Q ss_pred C----ccEEEEEec--CCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 015468 193 S----VKGAKVVTD--RTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (406)
Q Consensus 193 ~----i~~~~~~~~--~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 231 (406)
. +++|.++.. +...-++.||.++|-+..-|...++-+..
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 2 566666654 23356788999999999998888876653
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.96 E-value=0.16 Score=36.55 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=44.3
Q ss_pred EEEEeCCHHHHHHHHHHh-cCcccCCcceEeCcC--ccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcH
Q 015468 212 GFVRFGDESEQLRSMTEM-NGVLCSTRPMRIGPA--ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288 (406)
Q Consensus 212 ~fv~f~~~~~a~~a~~~l-~g~~~~g~~i~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~ 288 (406)
|+|+|.+.+-|...++.- +...+++..+.|.-. ......... -......++|.|.|||..+++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q--------------v~~~vs~rtVlvsgip~~l~e 66 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ--------------VFSGVSKRTVLVSGIPDVLDE 66 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE--------------EEEcccCCEEEEeCCCCCCCh
Confidence 689999999999988531 123345555544322 111111110 112345588999999999999
Q ss_pred HHHHhhhc
Q 015468 289 DILKTVFG 296 (406)
Q Consensus 289 ~~l~~~f~ 296 (406)
++|++..+
T Consensus 67 e~l~D~Le 74 (88)
T PF07292_consen 67 EELRDKLE 74 (88)
T ss_pred hhheeeEE
Confidence 99998654
No 216
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.52 E-value=0.06 Score=48.16 Aligned_cols=81 Identities=17% Similarity=0.334 Sum_probs=60.2
Q ss_pred eEEEcCCCCCCCHHHH---HHHHHhhCCCccEEEEEecCC--CC-CcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 168 TIFVGDLAADVTDYVL---QETFRAVYSSVKGAKVVTDRT--TG-RSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 168 ~l~v~~l~~~~~~~~l---~~~f~~~~g~i~~~~~~~~~~--~~-~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
-+||-+|+..+..+++ .+.|.. ||.|..|.+.++.. .+ ..-..++|+|...++|..||...+|..+.++.++.
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgq-ygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQ-YGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccc-cccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 5677788876655544 346665 88899998887652 11 11123799999999999999999999999999888
Q ss_pred CcCccccc
Q 015468 242 GPAATKKA 249 (406)
Q Consensus 242 ~~~~~~~~ 249 (406)
.+...+..
T Consensus 158 ~~gttkyc 165 (327)
T KOG2068|consen 158 SLGTTKYC 165 (327)
T ss_pred hhCCCcch
Confidence 87766543
No 217
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.10 E-value=0.11 Score=37.32 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=42.8
Q ss_pred EEEEEcCHHHHHHHHHHhCCCCCCCC--CccceecccccCCCC--CcCCCCCCceEEEcCCCCCCCHHHHHHHHH
Q 015468 118 GFIEFVSHAAAERVLQTFNGTQMPST--EQNFRLNWATYGAGE--RRQDDGPDFTIFVGDLAADVTDYVLQETFR 188 (406)
Q Consensus 118 afV~f~~~~~A~~A~~~l~~~~~~~~--~~~v~~~~~~~~~~~--~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 188 (406)
|+|+|.+.+-|...++ .....+... ...+++..-...... .-......++|.|.|||..+++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999987 333333222 222332221111110 112234456899999999999999988765
No 218
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.09 E-value=0.38 Score=40.17 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc--CcccCCcceEeCcCcccc
Q 015468 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN--GVLCSTRPMRIGPAATKK 248 (406)
Q Consensus 179 ~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--g~~~~g~~i~v~~~~~~~ 248 (406)
..+.|+++|.. ++.+..+..++. -+-..|.|.+.++|.+|...|+ +..+.|..+++.++....
T Consensus 8 ~~~~l~~l~~~-~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFST-YDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHT-T-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHh-cCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999997 999988888765 3458899999999999999999 899999999998885443
No 219
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=90.22 E-value=0.18 Score=43.68 Aligned_cols=74 Identities=30% Similarity=0.563 Sum_probs=49.2
Q ss_pred ceEEEcCCCcc------------CcHHHHHhhhccCCceEEEEeeC---------C-------CcE---------EEEEe
Q 015468 275 TTIFVGGLDPS------------VTDDILKTVFGQYGELVHVKIPA---------G-------KRC---------GFVQF 317 (406)
Q Consensus 275 ~~l~v~~l~~~------------~~~~~l~~~f~~~G~v~~v~i~~---------~-------~~~---------afV~f 317 (406)
.+|++.+||-. -+++.|+..|+.||.|..|.|+- + .+| |||.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 45666666642 47788999999999999998852 1 223 34666
Q ss_pred CCHHHHHHHHHHhCCceeC----Cc----eeEEeeccCC
Q 015468 318 ANRTCAEQALSVLNGTQLG----GQ----SIRLSWGRSP 348 (406)
Q Consensus 318 ~~~~~a~~a~~~l~~~~~~----g~----~l~v~~~~~~ 348 (406)
..-..-..|+.+|.|..+. ++ .+.|.|.+++
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 6556666777777776542 22 6777776654
No 220
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.88 E-value=1.4 Score=42.59 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=59.5
Q ss_pred CCCCceEEEcCCCcc-CcHHHHHhhhccC----CceEEEEeeCC--------------C---------------------
Q 015468 271 DPNNTTIFVGGLDPS-VTDDILKTVFGQY----GELVHVKIPAG--------------K--------------------- 310 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~----G~v~~v~i~~~--------------~--------------------- 310 (406)
...+++|-|.|+.|+ +...+|.-+|..| |.|.+|.|... .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 556788999999997 7889999999877 69999988421 0
Q ss_pred ------------------cEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 311 ------------------RCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 311 ------------------~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
=||.|+|.+++.|......+.|.++......+.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 179999999999999999999999986544443
No 221
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.80 E-value=0.27 Score=48.00 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=63.1
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
...++..++||+|+...++.+-++.+...+|.|.++.... |+|..|..+..+.+|+..++-..++|..+.+..
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4456678899999999999999999999999998876654 999999999999999999998889888776654
No 222
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=89.49 E-value=0.2 Score=51.81 Aligned_cols=9 Identities=33% Similarity=0.512 Sum_probs=4.3
Q ss_pred CCCCCCCCC
Q 015468 1 MMQQPPSQP 9 (406)
Q Consensus 1 ~~q~~~~q~ 9 (406)
||+|||+|+
T Consensus 1417 q~~p~~qq~ 1425 (1517)
T KOG1883|consen 1417 QQMPPPQQH 1425 (1517)
T ss_pred hhCCCccCC
Confidence 344445554
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=87.76 E-value=0.56 Score=38.20 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=56.3
Q ss_pred ceEEEcCCCccC-----cHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCc-eeEEeeccCC
Q 015468 275 TTIFVGGLDPSV-----TDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQ-SIRLSWGRSP 348 (406)
Q Consensus 275 ~~l~v~~l~~~~-----~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~~~~~ 348 (406)
..+.+.++...+ .......+|..|-+.....+++..+..-|.|.+.+.|..|...++...|.|+ .+.+-++.+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 446666676653 2233455677776666677788888889999999999999999999999998 8888877753
No 224
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=87.10 E-value=2.9 Score=36.62 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=39.8
Q ss_pred CCCceEEEcCCCccCcHHHHHhhhccCCce-EEEEeeCCCcEEEEEeCCHH
Q 015468 272 PNNTTIFVGGLDPSVTDDILKTVFGQYGEL-VHVKIPAGKRCGFVQFANRT 321 (406)
Q Consensus 272 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v-~~v~i~~~~~~afV~f~~~~ 321 (406)
....-|+|+||+.++.-.||+..+.+-+.+ .++.+.-.++.||+.|-|..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 334569999999999999999999877643 56666666889999998754
No 225
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.65 E-value=0.34 Score=45.39 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=53.4
Q ss_pred CCCCC-CHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcccc
Q 015468 174 LAADV-TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248 (406)
Q Consensus 174 l~~~~-~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 248 (406)
.++.. +.++|...|.+ ||.|..|.+-.. .-.|.|+|.+..+|-.|- ..++-.|.+|.|+|.|..+..
T Consensus 380 ~~~glnt~a~ln~hfA~-fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 380 SPFGLNTIADLNPHFAQ-FGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred cCCCCchHhhhhhhhhh-cCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEecCCc
Confidence 34433 46789999998 999999977543 336899999999997775 568889999999999987754
No 226
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.78 E-value=4.8 Score=27.24 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 176 ADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
..++.++++..|.+ |.- .+|+.+. .| -||.|.+.++|+++....++..+.+..+.+
T Consensus 10 ~~~~v~d~K~~Lr~-y~~---~~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRK-YRW---DRIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhc-CCc---ceEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35678999999997 763 2344442 23 479999999999999999998877665543
No 227
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=84.97 E-value=1.2 Score=35.94 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcccccccccccc
Q 015468 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQ 256 (406)
Q Consensus 177 ~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~ 256 (406)
..+-..|.+.+.+..+....+.+..- ..++..+.|.+.+++.++++ .....+.+..+.+....+.......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~--- 98 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEV--- 98 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccc---
Confidence 46777888888775565545555543 24688999999999999884 3445667777777766643321110
Q ss_pred ccccCCCCCCCCCCCCCCceEEEcCCCcc-CcHHHHHhhhccCCceEEEEeeC
Q 015468 257 KATYQNTQGSQGENDPNNTTIFVGGLDPS-VTDDILKTVFGQYGELVHVKIPA 308 (406)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~v~~v~i~~ 308 (406)
.......=|.|.|||.. .+++-|+.+.+.+|++.++....
T Consensus 99 ------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 99 ------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 00111123556799988 57788999999999999998754
No 228
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=84.32 E-value=4.5 Score=28.10 Aligned_cols=59 Identities=12% Similarity=0.227 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHhhCCCc-----cEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 176 ADVTDYVLQETFRAVYSSV-----KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g~i-----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++..+|..++.. -+.| -.|.+..+ |+||+-.. +.|..+++.|++..+.|+.++|+.+
T Consensus 11 dg~~~~~iv~~i~~-~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICN-EAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHT-CTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHh-ccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45778889899887 4443 45555443 78988755 4788999999999999999998753
No 229
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=83.77 E-value=0.33 Score=46.36 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=59.0
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 145 (406)
.|+||++|+++.++-++|..+++.+-.+..+.+.......+...+.+|.|+---....|+.+||+..+.....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 4679999999999999999999998777777666554444567788999998888888888899887754433
No 230
>PRK10927 essential cell division protein FtsN; Provisional
Probab=77.70 E-value=16 Score=33.04 Aligned_cols=66 Identities=8% Similarity=-0.070 Sum_probs=44.3
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 142 (406)
..-.|-|+-+.....-+.|+.-+...|--..| . ..|.....-.=-|.+.++|++++..|.+.-+.+
T Consensus 246 ~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I--~---~~g~~~RVrVGPf~sr~eAe~a~~rLk~aGis~ 311 (319)
T PRK10927 246 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKI--T---TNNGWNRVVIGPVKGKENADSTLNRLKMAGHTN 311 (319)
T ss_pred CcEEEEeCccCCHHHHHHHHHHHHHcCCeeEE--c---cCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCc
Confidence 44567788888878888899888888854344 1 122122222234899999999999888766643
No 231
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=76.88 E-value=5.2 Score=35.16 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=38.0
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHH
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~ 127 (406)
...-|+|+||+.++.-.||+..+.+-+.+ -+.|... | ..|-||+.|.+...
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk---g-~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK---G-HFGKCFLHFGNRKG 379 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCC-ceeEeee---c-CCcceeEecCCccC
Confidence 34559999999999999999999887643 3333332 2 57889999977643
No 232
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=72.15 E-value=25 Score=23.04 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=43.7
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCH----HHHHHHHHH
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANR----TCAEQALSV 329 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~----~~a~~a~~~ 329 (406)
++.|.|+.-.-....|.+.+...-.|.++.+....+.+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 467888888888899999999998899999988889999999854 444555554
No 233
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=71.77 E-value=11 Score=28.47 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHhhCCCccEEEEEec----CCCCCcceEEEEEeCCHHHHHH
Q 015468 176 ADVTDYVLQETFRAVYSSVKGAKVVTD----RTTGRSKGYGFVRFGDESEQLR 224 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g~i~~~~~~~~----~~~~~~~g~~fv~f~~~~~a~~ 224 (406)
..++.+||++-+++.|-.-.++.+..+ -..|++.|||.| |++.+.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 467889999999987776555554443 345788889977 777776654
No 234
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=66.96 E-value=26 Score=26.39 Aligned_cols=118 Identities=20% Similarity=0.212 Sum_probs=59.2
Q ss_pred CCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecccccCCCCC
Q 015468 80 DLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGER 159 (406)
Q Consensus 80 nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~~~~~~~ 159 (406)
-||+-+++ |.++|+.-|+|.+|..+..-.+ ..|+-.++|..-...+ .+++..........
T Consensus 10 VlPPYTnK--LSDYfeSPGKI~svItvtqypd-----------------ndal~~~~G~lE~vDg-~i~IGs~q~~~sV~ 69 (145)
T TIGR02542 10 VLPPYTNK--LSDYFESPGKIQSVITVTQYPD-----------------NDALLYVHGTLEQVDG-NIRIGSGQTPASVR 69 (145)
T ss_pred ecCCccch--hhHHhcCCCceEEEEEEeccCC-----------------chhhheeeeehhhccC-cEEEccCCCcccEE
Confidence 47887655 9999999999988876543111 1222223333211111 12222211111000
Q ss_pred cCCCCCCceEEEcCCCCCCCHHHHHHHHHh--hCCCccEEEEEecCCCCCcceEEEEEeCCH
Q 015468 160 RQDDGPDFTIFVGDLAADVTDYVLQETFRA--VYSSVKGAKVVTDRTTGRSKGYGFVRFGDE 219 (406)
Q Consensus 160 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~--~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~ 219 (406)
-......+.+ .--|..+|-.+++++|+. .|-.|..-.+.+|.-...+-..||..|...
T Consensus 70 i~gTPsgnnv--~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 70 IQGTPSGNNV--IFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred EecCCCCCce--ecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 0111111111 123677899999999985 144555555555532223344788888654
No 235
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=64.19 E-value=28 Score=25.77 Aligned_cols=49 Identities=24% Similarity=0.330 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHhhCCCccEEEEEecC----CCCCcceEEEEEeCCHHHHHHH
Q 015468 176 ADVTDYVLQETFRAVYSSVKGAKVVTDR----TTGRSKGYGFVRFGDESEQLRS 225 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g~i~~~~~~~~~----~~~~~~g~~fv~f~~~~~a~~a 225 (406)
.+.+..+|++.+.+.|+.=.+..++..- ..+++.|||.| |++.+.|.+.
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 4668899999998878855455444432 23567777766 7777666553
No 236
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=61.83 E-value=32 Score=32.07 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=55.6
Q ss_pred CCCCCCCCceEEEcCCCcc-CcHHHHHhhhccC----CceEEEEeeCC--------------------------------
Q 015468 267 QGENDPNNTTIFVGGLDPS-VTDDILKTVFGQY----GELVHVKIPAG-------------------------------- 309 (406)
Q Consensus 267 ~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~----G~v~~v~i~~~-------------------------------- 309 (406)
.++......+|-|-||.|+ +...+|...|+.| |.|..|.|...
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~ 218 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKF 218 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhcc
Confidence 4445666788999999987 7888999998876 67887877310
Q ss_pred --------------------Cc-------------------EEEEEeCCHHHHHHHHHHhCCceeCCc
Q 015468 310 --------------------KR-------------------CGFVQFANRTCAEQALSVLNGTQLGGQ 338 (406)
Q Consensus 310 --------------------~~-------------------~afV~f~~~~~a~~a~~~l~~~~~~g~ 338 (406)
++ +|.|++++.+.+........|.++...
T Consensus 219 ~~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 219 GDDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred CCccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc
Confidence 11 689999999999999998899887654
No 237
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=61.70 E-value=23 Score=28.29 Aligned_cols=108 Identities=11% Similarity=-0.006 Sum_probs=62.0
Q ss_pred cCHHHHHHHhccc-CCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecccccCCC-CCcCC
Q 015468 85 MEESYIASIFGHT-GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAG-ERRQD 162 (406)
Q Consensus 85 ~t~~~l~~~f~~~-G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~~~~~-~~~~~ 162 (406)
.+-..|...+... +....+.+..- ..++..+.|.+.+++..+++ +....-.+..+.+..-.+... ....-
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~W~~~~~~~~~~~ 100 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQRWSPDFNPSEVKF 100 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe---cccccccccchhhhhhcccccccccce
Confidence 5566666655442 33324444443 35789999999999999975 222222233333333221111 11111
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHHhhCCCccEEEEEe
Q 015468 163 DGPDFTIFVGDLAAD-VTDYVLQETFRAVYSSVKGAKVVT 201 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~~g~i~~~~~~~ 201 (406)
.....-|.|.|||.. .+++.++.+.+. .|.+..+....
T Consensus 101 ~~~~vWVri~glP~~~~~~~~~~~i~~~-iG~~i~vD~~t 139 (153)
T PF14111_consen 101 EHIPVWVRIYGLPLHLWSEEILKAIGSK-IGEPIEVDENT 139 (153)
T ss_pred eccchhhhhccCCHHHhhhHHHHHHHHh-cCCeEEEEcCC
Confidence 122234778899976 677788888886 99987776543
No 238
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=61.61 E-value=34 Score=24.42 Aligned_cols=57 Identities=7% Similarity=0.025 Sum_probs=42.6
Q ss_pred EEEeCCCCCcCHHHHHHHhccc-CC-eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHh
Q 015468 76 LWIGDLQPWMEESYIASIFGHT-GE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135 (406)
Q Consensus 76 l~V~nLp~~~t~~~l~~~f~~~-G~-v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 135 (406)
-|+--++.+++..+|++.++.. |. |.+|..+..+. ..--|||.+....+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 5666788899999999988874 43 77777776542 3456999999998888775533
No 239
>COG4907 Predicted membrane protein [Function unknown]
Probab=61.49 E-value=8.2 Score=36.50 Aligned_cols=15 Identities=7% Similarity=-0.064 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhCCce
Q 015468 320 RTCAEQALSVLNGTQ 334 (406)
Q Consensus 320 ~~~a~~a~~~l~~~~ 334 (406)
.+...+|++.++..+
T Consensus 525 ~dkVvkam~~~~~~e 539 (595)
T COG4907 525 SDKVVKAMRKALDME 539 (595)
T ss_pred HHHHHHHHHHhCcHh
Confidence 355566666555444
No 240
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.31 E-value=25 Score=32.67 Aligned_cols=58 Identities=17% Similarity=0.043 Sum_probs=45.3
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHH
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 133 (406)
.+-...|-|.++|.....+||...|+.|+.- .++|++- ....||..|.+...|..|+-
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~k-gfdIkWv-----DdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKWV-----DDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcC-CceeEEe-----ecceeEEeecchHHHHHHhh
Confidence 3345679999999998889999999999752 4444442 23479999999999999986
No 241
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.01 E-value=20 Score=23.83 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=14.0
Q ss_pred HHHHHHhcccCCeeEEEE
Q 015468 88 SYIASIFGHTGEFVSGKV 105 (406)
Q Consensus 88 ~~l~~~f~~~G~v~~~~i 105 (406)
.+||++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999844433
No 242
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.85 E-value=12 Score=36.88 Aligned_cols=9 Identities=0% Similarity=-0.038 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 015468 220 SEQLRSMTE 228 (406)
Q Consensus 220 ~~a~~a~~~ 228 (406)
.++..+++.
T Consensus 430 ~d~~~nse~ 438 (728)
T KOG4592|consen 430 GDPYANSEL 438 (728)
T ss_pred chHHHHHHH
Confidence 344444443
No 243
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=59.82 E-value=23 Score=25.30 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=39.0
Q ss_pred EEEcCCCccCcHHHHHhhhcc-CC-ceEEEEe---eCCCcEEEEEeCCHHHHHHHHHHh
Q 015468 277 IFVGGLDPSVTDDILKTVFGQ-YG-ELVHVKI---PAGKRCGFVQFANRTCAEQALSVL 330 (406)
Q Consensus 277 l~v~~l~~~~~~~~l~~~f~~-~G-~v~~v~i---~~~~~~afV~f~~~~~a~~a~~~l 330 (406)
-|+.-++..++..+|++.++. || .|.+|.. ..+..-|||++..-+.|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 455557788999999999977 44 4555544 334567999999888888766543
No 244
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=59.30 E-value=3.1 Score=41.03 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=6.5
Q ss_pred EeCCHHHHHHHHHHh
Q 015468 215 RFGDESEQLRSMTEM 229 (406)
Q Consensus 215 ~f~~~~~a~~a~~~l 229 (406)
.|...|...-++..|
T Consensus 329 ~fs~vEcLL~afh~L 343 (556)
T PF05918_consen 329 QFSYVECLLYAFHQL 343 (556)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred cchHhhHHHHHHHHH
Confidence 344445444444433
No 245
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=58.73 E-value=26 Score=24.56 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=38.3
Q ss_pred EEEcCCCccCcHHHHHhhhcc-CC-ceEEEEe---eCCCcEEEEEeCCHHHHHHHHHH
Q 015468 277 IFVGGLDPSVTDDILKTVFGQ-YG-ELVHVKI---PAGKRCGFVQFANRTCAEQALSV 329 (406)
Q Consensus 277 l~v~~l~~~~~~~~l~~~f~~-~G-~v~~v~i---~~~~~~afV~f~~~~~a~~a~~~ 329 (406)
-|+..++..++..+|++.++. |+ .|.+|.. ..+..-|||++..-+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 456667889999999998876 44 4555543 33456799999988888776554
No 246
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.33 E-value=16 Score=28.00 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=27.9
Q ss_pred eEEEeCCCCCc---------CHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHH
Q 015468 75 SLWIGDLQPWM---------EESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126 (406)
Q Consensus 75 ~l~V~nLp~~~---------t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~ 126 (406)
++.|-|++... +.++|.+.|+.|..+ +++.+.+.. -..+++.|+|.+.-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCCh
Confidence 46777876543 557899999999877 566666543 26899999997653
No 247
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=57.17 E-value=49 Score=23.19 Aligned_cols=57 Identities=9% Similarity=0.024 Sum_probs=42.0
Q ss_pred eEEEeCCCCCcCHHHHHHHhccc-CC-eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHH
Q 015468 75 SLWIGDLQPWMEESYIASIFGHT-GE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134 (406)
Q Consensus 75 ~l~V~nLp~~~t~~~l~~~f~~~-G~-v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 134 (406)
.-|+-.++.+++..+|+..++.. +. |.+|..+.-+. ..--|||.+...+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 35667789999999999888774 43 77777766542 345699999988888776543
No 248
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=56.03 E-value=1.8e+02 Score=28.31 Aligned_cols=10 Identities=0% Similarity=-0.104 Sum_probs=4.8
Q ss_pred EEEcCHHHHH
Q 015468 120 IEFVSHAAAE 129 (406)
Q Consensus 120 V~f~~~~~A~ 129 (406)
|.+.|++-..
T Consensus 128 IiV~TP~rL~ 137 (456)
T PRK10590 128 VLVATPGRLL 137 (456)
T ss_pred EEEEChHHHH
Confidence 4455555443
No 249
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=55.73 E-value=3.8 Score=40.38 Aligned_cols=6 Identities=0% Similarity=0.003 Sum_probs=1.5
Q ss_pred cCHHHH
Q 015468 85 MEESYI 90 (406)
Q Consensus 85 ~t~~~l 90 (406)
+|.+|+
T Consensus 190 VTaeEF 195 (556)
T PF05918_consen 190 VTAEEF 195 (556)
T ss_dssp --HHHH
T ss_pred ccHHHH
Confidence 333333
No 250
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=55.15 E-value=7.7 Score=36.85 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=7.7
Q ss_pred EEEcCCCccCcHHH
Q 015468 277 IFVGGLDPSVTDDI 290 (406)
Q Consensus 277 l~v~~l~~~~~~~~ 290 (406)
+.|.-|..++.++.
T Consensus 493 vKIHqlNK~WrdEK 506 (775)
T KOG1151|consen 493 VKIHQLNKNWRDEK 506 (775)
T ss_pred EeeehhccchhhHh
Confidence 44556666665543
No 251
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.25 E-value=19 Score=33.43 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=45.4
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCc-eEEEEeeCCCcEEEEEeCCHHHHHHHHHH
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGE-LVHVKIPAGKRCGFVQFANRTCAEQALSV 329 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~-v~~v~i~~~~~~afV~f~~~~~a~~a~~~ 329 (406)
-..+|-|.++|....-+||...|+.|+. =.+|.++. ...||-.|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-cceeEEeecchHHHHHHhhc
Confidence 4478999999999988999999998864 34566654 46799999999999999873
No 252
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=54.24 E-value=38 Score=31.63 Aligned_cols=83 Identities=11% Similarity=0.196 Sum_probs=59.9
Q ss_pred CCCCCceEEEeCCCCC-cCHHHHHHHhccc----CCeeEEEEEecCC----------CC---------------------
Q 015468 69 SSDGIRSLWIGDLQPW-MEESYIASIFGHT----GEFVSGKVIRNKQ----------TN--------------------- 112 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~v~~~~i~~~~~----------~g--------------------- 112 (406)
+...+.+|-|=|+.|+ +...+|...|+.| |.+..|.|+.... .|
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 3566788999999998 7888999888766 4577777765320 00
Q ss_pred -----C----------c-------------------cceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 113 -----F----------S-------------------EGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 113 -----~----------~-------------------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
+ . .-||.|++.+.+.+......++|..+......+.+.+
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeee
Confidence 0 0 2368899999999999999999988876655554444
No 253
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=53.33 E-value=46 Score=26.01 Aligned_cols=49 Identities=14% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHhhCC-CccEEEEEec----CCCCCcceEEEEEeCCHHHHHHH
Q 015468 176 ADVTDYVLQETFRAVYS-SVKGAKVVTD----RTTGRSKGYGFVRFGDESEQLRS 225 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g-~i~~~~~~~~----~~~~~~~g~~fv~f~~~~~a~~a 225 (406)
...+..+|++.+.+.|+ .=.+..++.. -..+++.|||.| |++.+.+...
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 36788999999998787 3333333332 234667777766 7776665543
No 254
>COG4907 Predicted membrane protein [Function unknown]
Probab=51.41 E-value=21 Score=33.97 Aligned_cols=12 Identities=0% Similarity=0.279 Sum_probs=5.3
Q ss_pred HHHHHHHHhCCc
Q 015468 322 CAEQALSVLNGT 333 (406)
Q Consensus 322 ~a~~a~~~l~~~ 333 (406)
-+.+.+++|...
T Consensus 524 V~dkVvkam~~~ 535 (595)
T COG4907 524 VSDKVVKAMRKA 535 (595)
T ss_pred cHHHHHHHHHHh
Confidence 334455544433
No 255
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=51.38 E-value=45 Score=22.81 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=38.9
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN 319 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~ 319 (406)
..+.|.++.-.-....+.+..+....|.++.+-..++.+.|+|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcC
Confidence 457788888777888899999888889999998888899999988
No 256
>PRK11901 hypothetical protein; Reviewed
Probab=49.71 E-value=1.9e+02 Score=26.50 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=41.5
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceE--EEEEcCHHHHHHHHHHhCC
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYG--FIEFVSHAAAERVLQTFNG 137 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~a--fV~f~~~~~A~~A~~~l~~ 137 (406)
.-+|-|-.+ .+++.|..|.+.++ +..++++.....|+ ..|. |=.|.+.++|..|+..|-.
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 345555554 45888999998886 56677877655553 2333 3359999999999987654
No 257
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=47.92 E-value=16 Score=31.98 Aligned_cols=70 Identities=10% Similarity=0.259 Sum_probs=45.9
Q ss_pred CCCceEEEeCCCCC------------cCHHHHHHHhcccCCeeEEEEEe-----cCCCCCccc-----e---------EE
Q 015468 71 DGIRSLWIGDLQPW------------MEESYIASIFGHTGEFVSGKVIR-----NKQTNFSEG-----Y---------GF 119 (406)
Q Consensus 71 ~~~~~l~V~nLp~~------------~t~~~l~~~f~~~G~v~~~~i~~-----~~~~g~~~g-----~---------af 119 (406)
...-||++.+||.. -+++-|+..|+.||.|..|.|+. ...+|+..| | ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 44457888888853 26778999999999988877743 234454433 2 33
Q ss_pred EEEcCHHHHHHHHHHhCCCCC
Q 015468 120 IEFVSHAAAERVLQTFNGTQM 140 (406)
Q Consensus 120 V~f~~~~~A~~A~~~l~~~~~ 140 (406)
|.|..-..-..|+..|.|..+
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 555555555667777777654
No 258
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=47.20 E-value=30 Score=28.44 Aligned_cols=57 Identities=14% Similarity=-0.017 Sum_probs=38.4
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCC--CccceEEEEEcCHHHHHHHHHH
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTN--FSEGYGFIEFVSHAAAERVLQT 134 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~ 134 (406)
.+++|.. +.+..-++|.++-+ |.+..+.+.+.. .+ ..+|..||.|.+.+.|.+.++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3567776 44444455555555 677777665542 22 4678999999999999998763
No 259
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=46.87 E-value=19 Score=33.44 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=49.1
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCC-eeEEEEEecCC--CCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQ--TNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 141 (406)
..+.|.|+.||+..++++|.+-...+-. |....+..... ...-.+.|||.|...++.....+.++|..+.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 4567999999999999999988877544 22222221100 0112567999999999998888888887654
No 260
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=45.47 E-value=5.2 Score=38.66 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=48.4
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeC
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLG 336 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~ 336 (406)
..++||+.|+..+++-++|..+++.+-.+..+.+... ..+..|+|+---....|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4478999999999999999999998877777665432 456789998655566666667666544
No 261
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=45.04 E-value=93 Score=23.33 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHhhCCCccEEEEEecC----CCCCcceEEEEEeCCHHHHHH
Q 015468 176 ADVTDYVLQETFRAVYSSVKGAKVVTDR----TTGRSKGYGFVRFGDESEQLR 224 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g~i~~~~~~~~~----~~~~~~g~~fv~f~~~~~a~~ 224 (406)
.+.+..+|++.+.+.++.=.+..++..- ..++++||+-| |.|.+.+..
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 4567899999999878765555554432 23567777766 777766544
No 262
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=44.50 E-value=98 Score=22.09 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHhhCCCccEEEEEe----cCCCCCcceEEEEEeCCHHHHHHH
Q 015468 176 ADVTDYVLQETFRAVYSSVKGAKVVT----DRTTGRSKGYGFVRFGDESEQLRS 225 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g~i~~~~~~~----~~~~~~~~g~~fv~f~~~~~a~~a 225 (406)
...+..+|++.+.+.++.=.+..++. .-..+.+.|+|.| |++.+.+.+.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 45678899999988776533333332 2234566777766 7777766543
No 263
>PRK10263 DNA translocase FtsK; Provisional
Probab=43.74 E-value=20 Score=39.21 Aligned_cols=10 Identities=0% Similarity=-0.037 Sum_probs=7.7
Q ss_pred HHHHhcccCC
Q 015468 90 IASIFGHTGE 99 (406)
Q Consensus 90 l~~~f~~~G~ 99 (406)
|++.|..||.
T Consensus 894 l~~~L~~F~i 903 (1355)
T PRK10263 894 VEARLADFRI 903 (1355)
T ss_pred HHHHHHHCCc
Confidence 6678888885
No 264
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=43.59 E-value=89 Score=20.96 Aligned_cols=40 Identities=23% Similarity=0.472 Sum_probs=27.9
Q ss_pred cCCCccCcHHHHHhhhcc--CCceEEEEeeCCCcEE-EEEeCCH
Q 015468 280 GGLDPSVTDDILKTVFGQ--YGELVHVKIPAGKRCG-FVQFANR 320 (406)
Q Consensus 280 ~~l~~~~~~~~l~~~f~~--~G~v~~v~i~~~~~~a-fV~f~~~ 320 (406)
..+-+-+..+ |.+.... .|.|...++..+++.+ +|+|+|-
T Consensus 10 ~~irDRi~~~-l~~~l~~~~~g~I~~fKmtDG~giG~vv~~~ng 52 (64)
T PF11061_consen 10 SRIRDRIPKE-LVDKLGKNPIGTIKGFKMTDGSGIGVVVEFSNG 52 (64)
T ss_pred hhhhhhccHH-HHHHhccCCcEEEEEEEEecCCcEEEEEEecCC
Confidence 4454455554 4455555 8999999999999876 6788763
No 265
>PF13388 DUF4106: Protein of unknown function (DUF4106)
Probab=43.50 E-value=19 Score=31.90 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=8.3
Q ss_pred CHHHHHHHhcccCC
Q 015468 86 EESYIASIFGHTGE 99 (406)
Q Consensus 86 t~~~l~~~f~~~G~ 99 (406)
+.+.|+.|-+.||-
T Consensus 264 nqeflkmLke~~g~ 277 (422)
T PF13388_consen 264 NQEFLKMLKENYGY 277 (422)
T ss_pred hHHHHHHHHhccCC
Confidence 44556666666764
No 266
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=41.75 E-value=23 Score=30.51 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=28.8
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCe
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEF 100 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v 100 (406)
....+..+||+-|||..+|++.|.++.+.+|-+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~v 67 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHV 67 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhh
Confidence 345667889999999999999999999999854
No 267
>PRK10263 DNA translocase FtsK; Provisional
Probab=41.19 E-value=24 Score=38.59 Aligned_cols=13 Identities=8% Similarity=0.049 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHh
Q 015468 217 GDESEQLRSMTEM 229 (406)
Q Consensus 217 ~~~~~a~~a~~~l 229 (406)
.+.+++.++|+.+
T Consensus 1070 tD~eka~~aLr~l 1082 (1355)
T PRK10263 1070 TDMKDAANALRWC 1082 (1355)
T ss_pred cCHHHHHHHHHHH
Confidence 4566666666543
No 268
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=40.08 E-value=34 Score=31.51 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=25.7
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 313 GFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 313 afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
|||+|++.++|..|++.+.... .+.++++.|-++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999999654443 3455777666554
No 269
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=39.15 E-value=74 Score=24.35 Aligned_cols=40 Identities=15% Similarity=0.379 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHH
Q 015468 178 VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 221 (406)
Q Consensus 178 ~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~ 221 (406)
.+.++|++.|+. |..++ ++.+.+. ....|+++|+|...-.
T Consensus 29 ~~~~~l~~~l~~-f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAE-FNPLK-VKPLYGK--QGHTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH----SE-EEEEEET--TEEEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHh-cCCce-eEECcCC--CCCcEEEEEEECCChH
Confidence 456899999998 99886 4444442 2567899999977543
No 270
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=38.86 E-value=53 Score=23.37 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=23.4
Q ss_pred eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCC
Q 015468 100 FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNG 137 (406)
Q Consensus 100 v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 137 (406)
|.++....+ .+||-|||=.+.+++..|++.+.+
T Consensus 34 I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 34 IYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp --EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TT
T ss_pred eEEEEEeCC-----CceEEEEEeCCHHHHHHHHhcccc
Confidence 556555443 699999999999999999875443
No 271
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=38.31 E-value=15 Score=34.13 Aligned_cols=61 Identities=15% Similarity=0.068 Sum_probs=49.8
Q ss_pred CceEEEeCCCCCcCHH--------HHHHHhcc--cCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHH
Q 015468 73 IRSLWIGDLQPWMEES--------YIASIFGH--TGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~--------~l~~~f~~--~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 133 (406)
-|.+|+.+.....+.+ ++..+|.. .+.+..+...++-....++|..|++|+..+.+.++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4568888888776655 89999998 6777788887776566789999999999999999864
No 272
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=38.20 E-value=61 Score=29.03 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=11.6
Q ss_pred EEEc-CCCCCCCHHHHHHHHHh
Q 015468 169 IFVG-DLAADVTDYVLQETFRA 189 (406)
Q Consensus 169 l~v~-~l~~~~~~~~l~~~f~~ 189 (406)
+.|+ +|-..+++....++...
T Consensus 114 IevGyGLEg~ltD~~a~~iIr~ 135 (271)
T COG1512 114 IEVGYGLEGVLTDAQAGRIIRE 135 (271)
T ss_pred EEEecCcccccChHHHHHHHHh
Confidence 4443 46666666665555554
No 273
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=36.84 E-value=30 Score=33.93 Aligned_cols=10 Identities=20% Similarity=0.059 Sum_probs=4.2
Q ss_pred HHHHHHHHHh
Q 015468 180 DYVLQETFRA 189 (406)
Q Consensus 180 ~~~l~~~f~~ 189 (406)
.+-|+...+.
T Consensus 553 sErl~~aveA 562 (757)
T KOG4368|consen 553 SERLLAAVEA 562 (757)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 274
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=36.17 E-value=1.2e+02 Score=21.10 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=30.7
Q ss_pred HHHHhhhccCCceEEEEeeCC--CcEEEEEeCCHHHHHHHHHHhC
Q 015468 289 DILKTVFGQYGELVHVKIPAG--KRCGFVQFANRTCAEQALSVLN 331 (406)
Q Consensus 289 ~~l~~~f~~~G~v~~v~i~~~--~~~afV~f~~~~~a~~a~~~l~ 331 (406)
.+|++.+..+| +....+.-. -++.|+-+.+.+.+.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 55777778888 555566555 5678888888888888887763
No 275
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=36.13 E-value=82 Score=22.89 Aligned_cols=53 Identities=11% Similarity=0.153 Sum_probs=36.9
Q ss_pred CCCCCcCHHHHHHHhcccCC-eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhC
Q 015468 80 DLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN 136 (406)
Q Consensus 80 nLp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 136 (406)
.+-+..+...|..-|-.-|. -+...+.+|- .+.+|.|.|.+.+.+..|.+.|-
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~----W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKDY----WRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhcccc----ceEeEEEECCChHHHHHHHHHHH
Confidence 34455677777766665554 2234444443 68999999999999999987654
No 276
>PRK10905 cell division protein DamX; Validated
Probab=36.02 E-value=65 Score=29.32 Aligned_cols=59 Identities=10% Similarity=0.004 Sum_probs=39.1
Q ss_pred eEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCC-ccceEEEEEcCHHHHHHHHHHhCC
Q 015468 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNF-SEGYGFIEFVSHAAAERVLQTFNG 137 (406)
Q Consensus 75 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~-~~g~afV~f~~~~~A~~A~~~l~~ 137 (406)
+|-|..+. +++.|++|..+.| +....++....+|+ ....-|=.|.+.++|++|++.|-.
T Consensus 249 TLQL~A~S---s~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 249 TLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred EEEEEecC---CHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 45554444 5788888888886 45555666555554 222334469999999999987653
No 277
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=35.11 E-value=1.4e+02 Score=22.30 Aligned_cols=43 Identities=9% Similarity=0.241 Sum_probs=29.9
Q ss_pred HHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHH
Q 015468 88 SYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133 (406)
Q Consensus 88 ~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 133 (406)
.+|.++++.+| |..-.|..+..+ +.-|||+++.|.+..-+++.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHHh
Confidence 35778889988 666666665433 57799999996666555553
No 278
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=34.81 E-value=71 Score=29.85 Aligned_cols=8 Identities=0% Similarity=-0.143 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 015468 181 YVLQETFR 188 (406)
Q Consensus 181 ~~l~~~f~ 188 (406)
+||.|.+.
T Consensus 322 ddvidKv~ 329 (358)
T PF07223_consen 322 DDVIDKVA 329 (358)
T ss_pred HHHHHHHH
Confidence 44444444
No 279
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=34.55 E-value=77 Score=21.55 Aligned_cols=64 Identities=9% Similarity=0.108 Sum_probs=42.3
Q ss_pred HHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccc
Q 015468 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (406)
Q Consensus 181 ~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 247 (406)
++|.+.|....-.|..+.-+..+.++..-..-||+.+...+... .++=..+.+..+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46777787633367777777776566777778888877655333 23445677888888876543
No 280
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.42 E-value=86 Score=28.83 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=34.7
Q ss_pred EEEEEcCHHHHHHHHHHhCCCCCCCCCccceecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHH
Q 015468 118 GFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188 (406)
Q Consensus 118 afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 188 (406)
|||+|++..+|..|++.+....- ..+++..+. +...|.=.||..+..+..++..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~----~~~~v~~AP-----------eP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP----NSWRVSPAP-----------EPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC----CCceEeeCC-----------CcccccccccCCChHHHHHHHHHH
Confidence 79999999999999995554432 222333222 122465677766666666655554
No 281
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.33 E-value=94 Score=22.09 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=24.6
Q ss_pred ceEEEEeeCC-CcEEEEEeCCHHHHHHHHHHhCCce
Q 015468 300 ELVHVKIPAG-KRCGFVQFANRTCAEQALSVLNGTQ 334 (406)
Q Consensus 300 ~v~~v~i~~~-~~~afV~f~~~~~a~~a~~~l~~~~ 334 (406)
.|.++..+.+ +|+-|||=.+.++..+|+..+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 4666666554 8999999999999999998776554
No 282
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=30.14 E-value=27 Score=33.34 Aligned_cols=8 Identities=13% Similarity=0.123 Sum_probs=3.2
Q ss_pred cCCCCCCC
Q 015468 172 GDLAADVT 179 (406)
Q Consensus 172 ~~l~~~~~ 179 (406)
-++|..++
T Consensus 394 peep~~lt 401 (775)
T KOG1151|consen 394 PEEPETLT 401 (775)
T ss_pred CCCccccc
Confidence 34444433
No 283
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.44 E-value=77 Score=21.72 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=21.0
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeC
Q 015468 311 RCGFVQFANRTCAEQALSVLNGTQLG 336 (406)
Q Consensus 311 ~~afV~f~~~~~a~~a~~~l~~~~~~ 336 (406)
...+|.|.+..+|.+|-+.|+...+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 36799999999999998888765443
No 284
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.12 E-value=10 Score=35.55 Aligned_cols=73 Identities=7% Similarity=-0.151 Sum_probs=54.5
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
.+.|+..++...+++++.-+|..||.|..+.+.+- +-.+||+-.+ +++.-+|..+.-..+.+..+++.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 44678889999999999999999999988876442 3356777764 4566677777767777777887776643
No 285
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=28.07 E-value=47 Score=27.46 Aligned_cols=42 Identities=7% Similarity=0.056 Sum_probs=33.5
Q ss_pred cceEEEEEeCCHHHHHHHHHHhcCcccCCc-ceEeCcCccccc
Q 015468 208 SKGYGFVRFGDESEQLRSMTEMNGVLCSTR-PMRIGPAATKKA 249 (406)
Q Consensus 208 ~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~-~i~v~~~~~~~~ 249 (406)
+.+..-|.|.+.+.|..|...++...+.+. .+..-++.+...
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~ 92 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHP 92 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCc
Confidence 345667899999999999999999999888 777777666443
No 286
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=27.74 E-value=1.7e+02 Score=18.81 Aligned_cols=54 Identities=6% Similarity=-0.078 Sum_probs=41.0
Q ss_pred eEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCH----HHHHHHHHH
Q 015468 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH----AAAERVLQT 134 (406)
Q Consensus 75 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~----~~A~~A~~~ 134 (406)
|+.|.|+.-.-....|++.+...-.|.++.+-. ..+.+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~------~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDL------ETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEET------TTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEEC------CCCEEEEEEecCCCCHHHHHHHHHH
Confidence 578899999888999999999987788888754 346788888754 455555553
No 287
>PF14893 PNMA: PNMA
Probab=26.62 E-value=74 Score=29.45 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=34.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCC-CCCcceEEEEEeCCH
Q 015468 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT-TGRSKGYGFVRFGDE 219 (406)
Q Consensus 166 ~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~-~~~~~g~~fv~f~~~ 219 (406)
.+.|.|.+||.++++++|.+.+....-.+-..++..... ......-++|+|...
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 347999999999999999999876444444444432200 011233577887653
No 288
>PF14893 PNMA: PNMA
Probab=26.60 E-value=45 Score=30.83 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=22.0
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcc
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGH 96 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~ 96 (406)
+..+.|.|.+||.++++++|++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 44578999999999999999987754
No 289
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=26.27 E-value=1.2e+02 Score=21.76 Aligned_cols=26 Identities=4% Similarity=0.139 Sum_probs=20.8
Q ss_pred CeeEEEEEecCCCCCccceEEEEEcC
Q 015468 99 EFVSGKVIRNKQTNFSEGYGFIEFVS 124 (406)
Q Consensus 99 ~v~~~~i~~~~~~g~~~g~afV~f~~ 124 (406)
.|.+++|..-...|+.+++|-|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788888876668899999999865
No 290
>PHA00370 III attachment protein
Probab=26.02 E-value=4.2e+02 Score=23.32 Aligned_cols=7 Identities=0% Similarity=0.496 Sum_probs=3.6
Q ss_pred EEEEeCC
Q 015468 313 GFVQFAN 319 (406)
Q Consensus 313 afV~f~~ 319 (406)
-|+.|+.
T Consensus 46 ~Yan~eG 52 (297)
T PHA00370 46 RYANYEG 52 (297)
T ss_pred eEEEecC
Confidence 3555554
No 291
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=25.55 E-value=1.5e+02 Score=29.84 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=50.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 168 ~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
+||+.+--...+..-+...+.. ++++....++.....+-.-+-++++|.....++.|. .|.++.+....+.+
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~-~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEK-KNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLKS 584 (681)
T ss_pred ceecccccccCCCcchhhCccc-ccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccceec
Confidence 6777777666677777777776 888888888877655555557899999998886665 45555555444443
No 292
>PF15258 FAM222A: Protein family of FAM222A
Probab=25.18 E-value=1.2e+02 Score=29.35 Aligned_cols=12 Identities=0% Similarity=-0.219 Sum_probs=5.9
Q ss_pred CceEEEeCCCCC
Q 015468 73 IRSLWIGDLQPW 84 (406)
Q Consensus 73 ~~~l~V~nLp~~ 84 (406)
.-||-.+.||-+
T Consensus 194 NVTVstStIPLs 205 (506)
T PF15258_consen 194 NVTVSTSTIPLS 205 (506)
T ss_pred ceeeeecccccC
Confidence 344555555544
No 293
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=24.90 E-value=42 Score=30.86 Aligned_cols=6 Identities=50% Similarity=1.187 Sum_probs=2.5
Q ss_pred eEEEcC
Q 015468 168 TIFVGD 173 (406)
Q Consensus 168 ~l~v~~ 173 (406)
.||.|.
T Consensus 104 VVfTGD 109 (379)
T KOG1432|consen 104 VVFTGD 109 (379)
T ss_pred EEEeCC
Confidence 344443
No 294
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=24.86 E-value=1.2e+02 Score=30.07 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=9.1
Q ss_pred EEEEEcCHHHHHHHH
Q 015468 118 GFIEFVSHAAAERVL 132 (406)
Q Consensus 118 afV~f~~~~~A~~A~ 132 (406)
...++.+..++..+-
T Consensus 389 ~~~~~~sp~~~qq~q 403 (742)
T KOG4274|consen 389 SLPMLSSPSPGQQVQ 403 (742)
T ss_pred cccccCCCchHhhhh
Confidence 345666676666664
No 295
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=24.54 E-value=1.2e+02 Score=22.16 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=20.9
Q ss_pred CeeEEEEEecCCCCCccceEEEEEcC
Q 015468 99 EFVSGKVIRNKQTNFSEGYGFIEFVS 124 (406)
Q Consensus 99 ~v~~~~i~~~~~~g~~~g~afV~f~~ 124 (406)
.|++|+|..-...|+-+++|-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47788887766678889999999865
No 296
>PRK11901 hypothetical protein; Reviewed
Probab=24.28 E-value=3.1e+02 Score=25.24 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=40.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhcC
Q 015468 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGY-GFVRFGDESEQLRSMTEMNG 231 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~g 231 (406)
....+|-|..+ .+++.|..|.++ .+ +..+.+.....+|+..-. -+=.|.+.++|+.|+..|-.
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~-~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKK-QN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHH-cC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 33445655544 457888888876 54 455666665444554422 12358999999999988754
No 297
>CHL00030 rpl23 ribosomal protein L23
Probab=23.43 E-value=3e+02 Score=20.10 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=25.6
Q ss_pred eEEEeCCCCCcCHHHHHHHhcc-cCC-eeEEEEEec
Q 015468 75 SLWIGDLQPWMEESYIASIFGH-TGE-FVSGKVIRN 108 (406)
Q Consensus 75 ~l~V~nLp~~~t~~~l~~~f~~-~G~-v~~~~i~~~ 108 (406)
.-|+--++.+++..+|++.++. |+. |..|..+.-
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 3667778999999999998887 443 667776654
No 298
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.32 E-value=2.9e+02 Score=22.12 Aligned_cols=55 Identities=9% Similarity=0.027 Sum_probs=37.8
Q ss_pred eEEEeCCCCCcCHHHHHHHhcc-cCC-eeEEEEEecCCCCCccceEEEEEcCHHHHHHHH
Q 015468 75 SLWIGDLQPWMEESYIASIFGH-TGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132 (406)
Q Consensus 75 ~l~V~nLp~~~t~~~l~~~f~~-~G~-v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 132 (406)
.-|+--++..++..+|++.++. |+. |..|..+.-+. ..--|||.+....+|....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~---g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD---GLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC---CceEEEEEECCCCcHHHHH
Confidence 3566668888999999988887 443 66666665432 2346999998777765443
No 299
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=22.93 E-value=2.7e+02 Score=19.39 Aligned_cols=62 Identities=8% Similarity=-0.004 Sum_probs=43.0
Q ss_pred EEEeCCCCCcCHHHHHHHhc-------ccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCC
Q 015468 76 LWIGDLQPWMEESYIASIFG-------HTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140 (406)
Q Consensus 76 l~V~nLp~~~t~~~l~~~f~-------~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 140 (406)
|-.++||..+|.++|.+.-. .+..|.-++-.-+... .+.||+.+=.|.|...++.+.- |.+.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~--~k~~Cly~Ap~~eaV~~~~~~a-G~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDD--GKIFCLYEAPDEEAVREHARRA-GLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCC--CeEEEEEECCCHHHHHHHHHHc-CCCc
Confidence 66789999899999887554 3333555555554322 4788888889999988888744 5544
No 300
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=22.80 E-value=1.2e+02 Score=21.68 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=21.5
Q ss_pred CeeEEEEEecCCCCCccceEEEEEcC
Q 015468 99 EFVSGKVIRNKQTNFSEGYGFIEFVS 124 (406)
Q Consensus 99 ~v~~~~i~~~~~~g~~~g~afV~f~~ 124 (406)
.|.+++|.+-..+|+-+.|+-|+|.+
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~ 27 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDN 27 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecc
Confidence 47899999887788888888898754
No 301
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=22.76 E-value=2e+02 Score=23.04 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=34.1
Q ss_pred EEEcCCCccCcHHHHHhhhcc-CC-ceEEEEe---eCCCcEEEEEeCCHHHHHHHHH
Q 015468 277 IFVGGLDPSVTDDILKTVFGQ-YG-ELVHVKI---PAGKRCGFVQFANRTCAEQALS 328 (406)
Q Consensus 277 l~v~~l~~~~~~~~l~~~f~~-~G-~v~~v~i---~~~~~~afV~f~~~~~a~~a~~ 328 (406)
.|+.-++...+..+|++.++. |+ .|.+|.. +.+..-|||++..-.+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 445557778899999998876 44 4455533 2334679999977666554433
No 302
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.68 E-value=14 Score=34.68 Aligned_cols=64 Identities=8% Similarity=-0.120 Sum_probs=46.6
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCC
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNG 137 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 137 (406)
+.+.|+..||..++++++.-+|..||.|.-+.+.+..+.+...-.+||.-.+ ++|..++..+.-
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~ 66 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKR 66 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHH
Confidence 3456888999999999999999999988877777666666667778887543 344445543333
No 303
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=22.46 E-value=3e+02 Score=27.59 Aligned_cols=87 Identities=13% Similarity=0.184 Sum_probs=55.5
Q ss_pred cceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc---ce---------ecccccCCC--CCcCCCCCCceEEEcCCCCCCCH
Q 015468 115 EGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN---FR---------LNWATYGAG--ERRQDDGPDFTIFVGDLAADVTD 180 (406)
Q Consensus 115 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~---v~---------~~~~~~~~~--~~~~~~~~~~~l~v~~l~~~~~~ 180 (406)
.--||+++.++.--+-..+.|+...+....+. -+ ++++..... --..+......+|+.+|+.++.+
T Consensus 236 Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~ 315 (621)
T COG0445 236 QIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPE 315 (621)
T ss_pred ccceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCH
Confidence 34699999999888887777777665432111 00 111111110 00122233558999999999999
Q ss_pred HHHHHHHHhhCCCccEEEEEec
Q 015468 181 YVLQETFRAVYSSVKGAKVVTD 202 (406)
Q Consensus 181 ~~l~~~f~~~~g~i~~~~~~~~ 202 (406)
+--.+++.. .-.+++++|++.
T Consensus 316 dVQ~~~irs-ipGlEna~i~rp 336 (621)
T COG0445 316 DVQEQIIRS-IPGLENAEILRP 336 (621)
T ss_pred HHHHHHHHh-Ccccccceeecc
Confidence 888888886 777888888764
No 304
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=22.23 E-value=64 Score=18.81 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=10.3
Q ss_pred CCcCHHHHHHHhcccC
Q 015468 83 PWMEESYIASIFGHTG 98 (406)
Q Consensus 83 ~~~t~~~l~~~f~~~G 98 (406)
.++++++|++.|....
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4688999999998754
No 305
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=22.21 E-value=1.6e+02 Score=20.12 Aligned_cols=63 Identities=10% Similarity=0.004 Sum_probs=40.1
Q ss_pred HHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcc
Q 015468 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (406)
Q Consensus 181 ~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 246 (406)
++|.+.|.+..-.+..+.-+..+.++.+-..-+|+.....+-.. -++=+.++++.+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46777888733367778777776666666667777765533222 2344567888888876544
No 306
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=22.09 E-value=2.1e+02 Score=17.87 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=24.4
Q ss_pred HHHHhhhccCC-ceEEEEeeC---CCcEEEEEeCCHHHHHHHH
Q 015468 289 DILKTVFGQYG-ELVHVKIPA---GKRCGFVQFANRTCAEQAL 327 (406)
Q Consensus 289 ~~l~~~f~~~G-~v~~v~i~~---~~~~afV~f~~~~~a~~a~ 327 (406)
.+|...|.+.| .|.++.+.. +.....+.+++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 34556666554 676766544 3455667778877777665
No 307
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=21.83 E-value=2.1e+02 Score=20.97 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=16.6
Q ss_pred ccceEEEEEcCHHHHHHHHH
Q 015468 114 SEGYGFIEFVSHAAAERVLQ 133 (406)
Q Consensus 114 ~~g~afV~f~~~~~A~~A~~ 133 (406)
......|+|.|.+.|..+..
T Consensus 52 ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 52 PTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred cccEEEEEcCCHHHHHHHhc
Confidence 35789999999999988864
No 308
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=21.79 E-value=3.2e+02 Score=19.74 Aligned_cols=46 Identities=9% Similarity=-0.062 Sum_probs=32.9
Q ss_pred HHHHHHHhcccCC-eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhC
Q 015468 87 ESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN 136 (406)
Q Consensus 87 ~~~l~~~f~~~G~-v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 136 (406)
.+.++++++.+|. +.++.+.. |..-....+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 4557788888875 77777765 4455678899999998887764443
No 309
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=21.67 E-value=1.2e+02 Score=28.34 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=43.4
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCc-eEEEEee-CC-------CcEEEEEeCCHHHHHHHHHHhCCcee
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGE-LVHVKIP-AG-------KRCGFVQFANRTCAEQALSVLNGTQL 335 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~-v~~v~i~-~~-------~~~afV~f~~~~~a~~a~~~l~~~~~ 335 (406)
+.|.|.+||...++.+|.+....|-. |....+. .+ .+.++|.|...++...-...++|..|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 56889999999999999887766532 2222222 11 45789999999887777777777764
No 310
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=21.56 E-value=2.3e+02 Score=20.36 Aligned_cols=46 Identities=15% Similarity=0.349 Sum_probs=30.1
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEE
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEF 122 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f 122 (406)
.-|||++++..+-|.-...+.+..+.=.-+.+..+. + ..||+|-..
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~--n-eqG~~~~t~ 71 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN--N-EQGFDFRTL 71 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC--C-CCCEEEEEe
Confidence 349999999998777666666655443333344432 2 678888775
No 311
>KOG4679 consensus Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast) [General function prediction only]
Probab=21.10 E-value=1.3e+02 Score=28.91 Aligned_cols=15 Identities=7% Similarity=0.240 Sum_probs=10.7
Q ss_pred cCHHHHHHHhcccCC
Q 015468 85 MEESYIASIFGHTGE 99 (406)
Q Consensus 85 ~t~~~l~~~f~~~G~ 99 (406)
++..+|.+++..||.
T Consensus 254 tSsktlhdlyldcgS 268 (572)
T KOG4679|consen 254 TSSKTLHDLYLDCGS 268 (572)
T ss_pred ccchhHHHHHHhhcc
Confidence 566777777777775
No 312
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=20.39 E-value=2.3e+02 Score=29.45 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=9.9
Q ss_pred eEEEEEeCCHHHHHHHHH
Q 015468 210 GYGFVRFGDESEQLRSMT 227 (406)
Q Consensus 210 g~~fv~f~~~~~a~~a~~ 227 (406)
|.|.+-|-++.-..+|+.
T Consensus 632 GIalLPFiDe~rLl~a~~ 649 (931)
T KOG2044|consen 632 GIALLPFIDERRLLSAVA 649 (931)
T ss_pred ccccccccchhhHHHHHH
Confidence 455566666655555544
Done!