Query 015468
Match_columns 406
No_of_seqs 388 out of 3493
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 13:09:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 6.1E-46 2.1E-50 336.8 28.7 240 72-350 21-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 2.1E-45 7.1E-50 334.7 25.9 249 66-348 34-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 2.2E-34 7.6E-39 249.0 18.6 167 163-349 12-182 (213)
4 4f02_A Polyadenylate-binding p 100.0 9E-35 3.1E-39 251.5 15.4 172 71-250 13-184 (213)
5 1l3k_A Heterogeneous nuclear r 100.0 6.8E-33 2.3E-37 237.0 19.0 173 162-352 9-187 (196)
6 1b7f_A Protein (SXL-lethal pro 100.0 8.9E-33 3E-37 230.2 19.1 165 72-244 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 1.1E-32 3.7E-37 229.4 19.5 164 73-244 2-167 (167)
8 3md3_A Nuclear and cytoplasmic 100.0 8.7E-33 3E-37 229.8 18.5 165 74-245 1-165 (166)
9 1l3k_A Heterogeneous nuclear r 100.0 7.7E-33 2.6E-37 236.6 18.7 178 69-251 9-187 (196)
10 2qfj_A FBP-interacting repress 100.0 9.6E-33 3.3E-37 239.8 18.8 176 71-249 26-207 (216)
11 3nmr_A Cugbp ELAV-like family 100.0 3.6E-32 1.2E-36 228.1 20.8 168 72-245 2-175 (175)
12 2qfj_A FBP-interacting repress 100.0 1.7E-32 5.9E-37 238.2 18.3 175 166-351 28-208 (216)
13 1b7f_A Protein (SXL-lethal pro 100.0 2.6E-32 9E-37 227.3 18.7 159 165-345 2-168 (168)
14 1fxl_A Paraneoplastic encephal 100.0 5.7E-32 2E-36 225.0 19.9 158 166-345 2-167 (167)
15 3md3_A Nuclear and cytoplasmic 100.0 5E-32 1.7E-36 225.2 18.9 160 167-347 1-166 (166)
16 2cjk_A Nuclear polyadenylated 100.0 7.6E-33 2.6E-37 230.4 12.4 165 72-247 2-166 (167)
17 3nmr_A Cugbp ELAV-like family 100.0 4.7E-31 1.6E-35 221.3 19.3 161 165-346 2-175 (175)
18 2cjk_A Nuclear polyadenylated 100.0 7.5E-32 2.6E-36 224.4 13.4 159 165-348 2-166 (167)
19 2adc_A Polypyrimidine tract-bi 100.0 1.3E-30 4.6E-35 227.8 20.6 181 162-348 30-228 (229)
20 3pgw_A U1-A; protein-RNA compl 100.0 1.2E-30 4.1E-35 236.0 19.9 181 162-346 5-281 (282)
21 2g4b_A Splicing factor U2AF 65 100.0 9.6E-31 3.3E-35 218.7 17.3 159 72-245 3-172 (172)
22 3tyt_A Heterogeneous nuclear r 100.0 1.6E-30 5.6E-35 222.2 16.5 175 165-345 3-204 (205)
23 2yh0_A Splicing factor U2AF 65 100.0 2.6E-30 8.8E-35 221.3 17.2 168 71-248 2-195 (198)
24 3tyt_A Heterogeneous nuclear r 100.0 3.1E-30 1.1E-34 220.5 17.6 156 72-237 3-193 (205)
25 1qm9_A Polypyrimidine tract-bi 100.0 3.3E-30 1.1E-34 220.6 17.6 177 166-348 3-197 (198)
26 1fje_B Nucleolin RBD12, protei 100.0 6.7E-31 2.3E-35 220.3 12.9 164 162-348 9-174 (175)
27 2yh0_A Splicing factor U2AF 65 100.0 8.8E-30 3E-34 217.9 19.5 177 165-350 3-196 (198)
28 2g4b_A Splicing factor U2AF 65 100.0 5.8E-30 2E-34 214.0 16.8 153 165-346 3-172 (172)
29 3smz_A Protein raver-1, ribonu 100.0 2.5E-29 8.5E-34 227.5 20.1 174 72-251 94-268 (284)
30 3pgw_A U1-A; protein-RNA compl 100.0 2.6E-29 8.9E-34 227.2 19.8 166 69-245 5-281 (282)
31 2adc_A Polypyrimidine tract-bi 100.0 4.4E-29 1.5E-33 218.2 19.4 165 70-247 31-228 (229)
32 1fje_B Nucleolin RBD12, protei 100.0 1.3E-30 4.6E-35 218.5 9.3 167 68-247 8-174 (175)
33 2ghp_A U4/U6 snRNA-associated 100.0 2.3E-29 7.8E-34 228.7 14.9 171 72-247 116-291 (292)
34 3sde_A Paraspeckle component 1 100.0 1.2E-28 4.2E-33 219.7 19.2 161 68-249 17-181 (261)
35 1qm9_A Polypyrimidine tract-bi 100.0 8.3E-29 2.8E-33 211.8 16.9 162 73-247 3-197 (198)
36 3sde_A Paraspeckle component 1 100.0 6.1E-28 2.1E-32 215.2 18.0 155 163-351 19-182 (261)
37 2i2y_A Fusion protein consists 99.9 7.7E-23 2.6E-27 166.2 13.0 138 206-349 10-149 (150)
38 2kn4_A Immunoglobulin G-bindin 99.9 3.4E-22 1.2E-26 164.1 16.4 146 196-351 2-153 (158)
39 2kn4_A Immunoglobulin G-bindin 99.9 1.1E-22 3.8E-27 166.9 13.3 146 102-250 2-153 (158)
40 4f25_A Polyadenylate-binding p 99.8 3.6E-21 1.2E-25 148.6 9.0 107 72-182 4-113 (115)
41 4f25_A Polyadenylate-binding p 99.8 4.7E-21 1.6E-25 147.9 9.6 109 166-290 5-113 (115)
42 2i2y_A Fusion protein consists 99.8 2E-20 6.8E-25 151.9 11.2 128 112-248 10-149 (150)
43 1u6f_A Tcubp1, RNA-binding pro 99.8 7.9E-20 2.7E-24 146.4 12.9 84 70-155 39-122 (139)
44 3pgw_S U1-70K; protein-RNA com 99.8 1.4E-20 4.8E-25 178.3 8.0 80 272-351 100-185 (437)
45 1sjq_A Polypyrimidine tract-bi 99.8 5.7E-20 1.9E-24 137.0 9.5 82 271-352 13-96 (105)
46 1x4d_A Matrin 3; structural ge 99.8 2.7E-19 9.1E-24 133.4 11.7 79 272-350 13-94 (102)
47 2cq1_A PTB-like protein L; RRM 99.8 7.7E-19 2.6E-23 131.1 14.1 84 269-352 10-95 (101)
48 3r27_A HnRNP L, heterogeneous 99.8 1.8E-19 6.3E-24 132.8 10.5 80 270-349 17-98 (100)
49 4fxv_A ELAV-like protein 1; RN 99.8 1.8E-19 6E-24 134.8 10.4 81 165-246 18-98 (99)
50 4fxv_A ELAV-like protein 1; RN 99.8 1.4E-19 4.8E-24 135.3 9.7 81 71-153 17-97 (99)
51 2dgu_A Heterogeneous nuclear r 99.8 6.9E-19 2.4E-23 133.1 13.4 81 271-353 8-88 (103)
52 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.6E-19 8.9E-24 146.3 11.3 81 271-351 36-122 (156)
53 1wex_A Hypothetical protein (r 99.8 9.5E-19 3.3E-23 131.5 12.9 82 270-351 11-94 (104)
54 2wbr_A GW182, gawky, LD47780P; 99.8 4.7E-19 1.6E-23 125.5 9.7 75 272-346 5-79 (89)
55 3q2s_C Cleavage and polyadenyl 99.8 7.7E-20 2.6E-24 158.4 6.3 76 273-348 67-150 (229)
56 1x4c_A Splicing factor, argini 99.8 3.3E-18 1.1E-22 130.4 14.1 80 271-351 12-96 (108)
57 2ad9_A Polypyrimidine tract-bi 99.8 9.9E-19 3.4E-23 133.7 11.1 82 271-352 28-111 (119)
58 1u6f_A Tcubp1, RNA-binding pro 99.8 1.3E-18 4.6E-23 139.2 12.4 83 269-351 37-125 (139)
59 2lea_A Serine/arginine-rich sp 99.8 3.9E-19 1.3E-23 141.0 8.5 120 211-352 6-131 (135)
60 3s8s_A Histone-lysine N-methyl 99.8 7.7E-19 2.6E-23 133.9 9.7 80 71-152 4-83 (110)
61 1why_A Hypothetical protein ri 99.8 2.8E-18 9.7E-23 128.2 12.3 81 270-350 13-95 (97)
62 2lea_A Serine/arginine-rich sp 99.8 3.2E-19 1.1E-23 141.5 7.3 126 116-250 5-130 (135)
63 2cq3_A RNA-binding protein 9; 99.8 6.4E-18 2.2E-22 127.8 14.1 85 268-352 9-97 (103)
64 2cpj_A Non-POU domain-containi 99.8 3.1E-18 1.1E-22 128.5 12.3 81 270-350 11-91 (99)
65 3s8s_A Histone-lysine N-methyl 99.8 1.3E-18 4.3E-23 132.7 10.1 86 164-250 4-89 (110)
66 2dnq_A RNA-binding protein 4B; 99.8 3.5E-18 1.2E-22 125.7 12.1 79 271-351 5-83 (90)
67 1x4a_A Splicing factor, argini 99.8 5.6E-18 1.9E-22 129.5 13.6 82 269-350 17-101 (109)
68 1x4f_A Matrin 3; structural ge 99.8 1.8E-18 6.1E-23 130.8 10.5 81 271-351 22-105 (112)
69 2cqd_A RNA-binding region cont 99.8 6.8E-18 2.3E-22 130.6 14.0 83 268-351 11-99 (116)
70 3ex7_B RNA-binding protein 8A; 99.8 1.4E-18 4.9E-23 136.6 10.2 83 269-351 17-105 (126)
71 2d9p_A Polyadenylate-binding p 99.8 5.4E-18 1.8E-22 128.2 12.6 84 269-352 10-97 (103)
72 2dnz_A Probable RNA-binding pr 99.8 5.4E-18 1.8E-22 126.2 12.4 79 272-350 3-87 (95)
73 2lxi_A RNA-binding protein 10; 99.8 4.6E-19 1.6E-23 130.4 6.5 83 167-250 2-86 (91)
74 2fy1_A RNA-binding motif prote 99.8 3.9E-18 1.3E-22 131.6 11.9 80 272-351 5-89 (116)
75 2dgt_A RNA-binding protein 30; 99.8 5.7E-18 2E-22 125.2 12.3 79 270-350 6-84 (92)
76 1whw_A Hypothetical protein ri 99.8 5.8E-18 2E-22 127.1 12.5 81 271-351 5-91 (99)
77 2cqi_A Nucleolysin TIAR; RNA r 99.8 7.5E-18 2.6E-22 127.4 13.2 84 269-352 10-97 (103)
78 1x4g_A Nucleolysin TIAR; struc 99.8 3.7E-18 1.3E-22 130.5 11.5 81 271-351 22-102 (109)
79 2cph_A RNA binding motif prote 99.8 7E-18 2.4E-22 128.6 12.9 84 269-352 10-101 (107)
80 2dgx_A KIAA0430 protein; RRM d 99.8 4.2E-18 1.5E-22 126.8 11.2 81 271-351 6-93 (96)
81 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-17 4.7E-22 128.6 14.3 84 269-352 10-99 (115)
82 2dgs_A DAZ-associated protein 99.8 1.1E-17 3.7E-22 125.5 13.2 82 270-352 6-93 (99)
83 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2E-18 6.9E-23 142.2 10.0 136 214-352 11-156 (165)
84 2cq0_A Eukaryotic translation 99.8 9.5E-18 3.2E-22 126.8 12.6 82 270-351 11-98 (103)
85 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.7E-18 9.4E-23 141.4 10.4 130 120-250 11-155 (165)
86 2lxi_A RNA-binding protein 10; 99.8 1E-18 3.5E-23 128.6 6.9 78 274-351 1-86 (91)
87 1x5t_A Splicing factor 3B subu 99.8 3.5E-18 1.2E-22 127.5 10.0 80 272-351 3-89 (96)
88 2dgp_A Bruno-like 4, RNA bindi 99.8 8.1E-18 2.8E-22 128.0 12.1 89 68-156 8-97 (106)
89 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.2E-18 2.1E-22 127.6 11.4 83 270-352 8-96 (102)
90 2ytc_A PRE-mRNA-splicing facto 99.8 3.7E-18 1.3E-22 124.2 9.8 77 270-346 8-85 (85)
91 2dnh_A Bruno-like 5, RNA bindi 99.8 9.3E-18 3.2E-22 127.4 12.4 82 271-352 12-101 (105)
92 1x5u_A Splicing factor 3B subu 99.8 1.1E-17 3.7E-22 127.0 12.6 83 269-351 10-98 (105)
93 2div_A TRNA selenocysteine ass 99.8 4.1E-18 1.4E-22 127.9 10.1 87 69-155 5-94 (99)
94 2lkz_A RNA-binding protein 5; 99.8 8E-19 2.7E-23 129.6 6.0 84 70-153 6-93 (95)
95 2dnz_A Probable RNA-binding pr 99.8 1.4E-17 4.7E-22 124.0 12.8 82 71-154 3-84 (95)
96 2dnm_A SRP46 splicing factor; 99.8 8.4E-18 2.9E-22 127.1 11.8 82 270-351 9-96 (103)
97 2cpz_A CUG triplet repeat RNA- 99.8 9.1E-18 3.1E-22 129.6 12.2 86 68-155 20-105 (115)
98 1x5u_A Splicing factor 3B subu 99.7 1.4E-17 4.8E-22 126.4 12.7 86 68-155 10-95 (105)
99 2jrs_A RNA-binding protein 39; 99.7 1.1E-17 3.8E-22 127.2 12.1 85 67-153 20-104 (108)
100 2la4_A Nuclear and cytoplasmic 99.7 3E-18 1E-22 129.1 8.9 77 272-348 25-101 (101)
101 3n9u_C Cleavage and polyadenyl 99.7 2.3E-18 7.9E-23 139.8 8.7 81 70-152 52-134 (156)
102 2dgs_A DAZ-associated protein 99.7 1.6E-17 5.3E-22 124.7 12.7 83 70-155 7-89 (99)
103 2khc_A Testis-specific RNP-typ 99.7 1.1E-17 3.7E-22 129.9 12.2 83 67-151 34-116 (118)
104 2do4_A Squamous cell carcinoma 99.7 1.6E-17 5.4E-22 124.9 12.6 82 269-350 12-98 (100)
105 2dnp_A RNA-binding protein 14; 99.7 1.1E-17 3.7E-22 123.1 11.4 79 271-351 6-84 (90)
106 1x5s_A Cold-inducible RNA-bind 99.7 1.2E-17 4.2E-22 126.0 11.9 86 68-155 7-92 (102)
107 1x5s_A Cold-inducible RNA-bind 99.7 7.7E-18 2.6E-22 127.1 10.8 82 270-351 8-95 (102)
108 2lkz_A RNA-binding protein 5; 99.7 1.8E-18 6E-23 127.7 7.0 79 167-246 10-94 (95)
109 2do0_A HnRNP M, heterogeneous 99.7 3.5E-17 1.2E-21 126.2 14.6 82 270-351 11-97 (114)
110 2cpd_A Apobec-1 stimulating pr 99.7 2.5E-17 8.5E-22 123.5 13.4 80 269-350 10-91 (99)
111 3md1_A Nuclear and cytoplasmic 99.7 7.6E-18 2.6E-22 122.0 10.2 75 275-349 2-82 (83)
112 3p5t_L Cleavage and polyadenyl 99.7 3.8E-18 1.3E-22 125.5 8.5 82 167-249 2-85 (90)
113 2dnm_A SRP46 splicing factor; 99.7 9.3E-18 3.2E-22 126.9 10.9 84 69-154 9-92 (103)
114 2cpf_A RNA binding motif prote 99.7 9.3E-18 3.2E-22 125.7 10.7 81 272-352 3-92 (98)
115 2dgo_A Cytotoxic granule-assoc 99.7 2.1E-17 7.4E-22 127.6 13.0 92 159-251 8-99 (115)
116 2la6_A RNA-binding protein FUS 99.7 1.4E-17 4.8E-22 124.9 11.6 81 70-152 10-98 (99)
117 2cq2_A Hypothetical protein LO 99.7 7.1E-18 2.4E-22 127.5 9.9 81 272-352 23-110 (114)
118 1wi8_A EIF-4B, eukaryotic tran 99.7 2.3E-17 7.7E-22 124.9 12.7 80 270-351 11-97 (104)
119 2kvi_A Nuclear polyadenylated 99.7 4.3E-18 1.5E-22 126.8 8.5 79 271-351 7-86 (96)
120 3lqv_A PRE-mRNA branch site pr 99.7 5E-18 1.7E-22 131.2 9.1 104 164-300 6-109 (115)
121 1sjq_A Polypyrimidine tract-bi 99.7 9E-18 3.1E-22 125.1 9.9 80 69-156 12-93 (105)
122 3p5t_L Cleavage and polyadenyl 99.7 2.9E-18 9.8E-23 126.2 7.1 78 74-153 2-81 (90)
123 1wf1_A RNA-binding protein RAL 99.7 1.1E-17 3.8E-22 128.0 10.7 77 272-350 25-102 (110)
124 1x5p_A Negative elongation fac 99.7 4.4E-17 1.5E-21 121.6 13.5 79 271-351 12-90 (97)
125 3md1_A Nuclear and cytoplasmic 99.7 1.2E-17 4.3E-22 120.9 10.2 81 167-248 2-82 (83)
126 2cpz_A CUG triplet repeat RNA- 99.7 2E-17 6.7E-22 127.8 11.9 89 161-250 20-108 (115)
127 2jrs_A RNA-binding protein 39; 99.7 2.7E-17 9.1E-22 125.1 12.4 88 160-248 20-107 (108)
128 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.2E-17 4.1E-22 121.5 10.0 76 271-346 4-85 (85)
129 1p27_B RNA-binding protein 8A; 99.7 1.8E-17 6.3E-22 126.0 11.4 82 70-153 20-101 (106)
130 3bs9_A Nucleolysin TIA-1 isofo 99.7 8.5E-18 2.9E-22 122.9 9.2 81 71-153 4-84 (87)
131 2e5h_A Zinc finger CCHC-type a 99.7 2.2E-17 7.6E-22 122.6 11.6 78 269-346 11-94 (94)
132 1x4h_A RNA-binding protein 28; 99.7 3.5E-17 1.2E-21 125.5 13.1 84 269-352 10-105 (111)
133 2dhg_A TRNA selenocysteine ass 99.7 1.1E-17 3.8E-22 126.7 10.1 82 271-352 6-94 (104)
134 2x1f_A MRNA 3'-END-processing 99.7 1.5E-17 5.2E-22 123.9 10.6 77 274-350 2-84 (96)
135 2cph_A RNA binding motif prote 99.7 3.1E-17 1.1E-21 125.0 12.5 86 68-155 10-97 (107)
136 2do4_A Squamous cell carcinoma 99.7 2.4E-17 8.3E-22 123.8 11.8 86 161-248 12-97 (100)
137 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-17 3.6E-22 122.4 9.5 82 165-247 5-86 (87)
138 3ns6_A Eukaryotic translation 99.7 5.5E-18 1.9E-22 127.1 8.1 83 70-153 3-91 (100)
139 2hvz_A Splicing factor, argini 99.7 9.3E-18 3.2E-22 126.4 9.4 76 275-350 1-77 (101)
140 2kxn_B Transformer-2 protein h 99.7 1.8E-17 6.3E-22 130.1 11.3 84 68-153 41-124 (129)
141 2cqc_A Arginine/serine-rich sp 99.7 1.1E-17 3.8E-22 124.5 9.6 85 67-153 9-93 (95)
142 2d9p_A Polyadenylate-binding p 99.7 3.9E-17 1.3E-21 123.4 12.6 85 67-155 9-93 (103)
143 1whx_A Hypothetical protein ri 99.7 5.6E-18 1.9E-22 129.6 7.9 77 273-349 9-85 (111)
144 2fy1_A RNA-binding motif prote 99.7 3.4E-17 1.2E-21 126.2 12.3 82 70-154 4-85 (116)
145 1whw_A Hypothetical protein ri 99.7 1.5E-17 5.3E-22 124.7 10.1 87 163-250 5-91 (99)
146 2cqc_A Arginine/serine-rich sp 99.7 2.6E-17 8.8E-22 122.5 11.2 85 161-246 10-94 (95)
147 2e5h_A Zinc finger CCHC-type a 99.7 1.3E-17 4.5E-22 123.8 9.5 83 68-152 11-93 (94)
148 2cq0_A Eukaryotic translation 99.7 1.6E-17 5.6E-22 125.5 10.2 90 160-250 9-98 (103)
149 2cqh_A IGF-II mRNA-binding pro 99.7 7.8E-18 2.7E-22 124.7 8.2 79 271-350 5-85 (93)
150 2dgv_A HnRNP M, heterogeneous 99.7 1.4E-17 4.9E-22 123.1 9.6 80 271-350 5-88 (92)
151 3beg_B Splicing factor, argini 99.7 1.3E-17 4.6E-22 128.4 9.8 76 273-349 15-95 (115)
152 2jvr_A Nucleolar protein 3; RN 99.7 8.8E-18 3E-22 127.5 8.5 77 273-349 27-106 (111)
153 2cpe_A RNA-binding protein EWS 99.7 3.6E-17 1.2E-21 125.9 12.1 83 269-351 10-106 (113)
154 2jvo_A Nucleolar protein 3; nu 99.7 1.7E-17 5.7E-22 126.2 10.1 80 269-350 26-105 (108)
155 4a8x_A RNA-binding protein wit 99.7 2.1E-17 7.1E-22 121.1 10.3 77 273-349 3-86 (88)
156 2hvz_A Splicing factor, argini 99.7 1.2E-17 4.1E-22 125.8 9.2 100 167-283 1-100 (101)
157 2cpi_A CCR4-NOT transcription 99.7 3.6E-17 1.2E-21 125.2 11.9 78 272-349 13-102 (111)
158 1wex_A Hypothetical protein (r 99.7 5.2E-17 1.8E-21 122.0 12.5 82 69-156 11-92 (104)
159 2kxn_B Transformer-2 protein h 99.7 2.5E-17 8.6E-22 129.4 11.2 87 161-248 41-127 (129)
160 3lqv_A PRE-mRNA branch site pr 99.7 1.1E-17 3.8E-22 129.2 9.0 105 70-193 5-109 (115)
161 2x1f_A MRNA 3'-END-processing 99.7 1.6E-17 5.5E-22 123.8 9.6 85 166-251 2-86 (96)
162 2err_A Ataxin-2-binding protei 99.7 1.5E-17 5.2E-22 126.8 9.5 81 268-348 23-107 (109)
163 1p27_B RNA-binding protein 8A; 99.7 3E-17 1E-21 124.8 11.1 86 162-248 19-104 (106)
164 2dnh_A Bruno-like 5, RNA bindi 99.7 4.7E-17 1.6E-21 123.5 12.1 88 161-250 10-100 (105)
165 2la6_A RNA-binding protein FUS 99.7 4.5E-17 1.5E-21 122.1 11.9 84 161-245 8-99 (99)
166 3r27_A HnRNP L, heterogeneous 99.7 1.2E-17 4.1E-22 123.1 8.4 79 70-154 18-96 (100)
167 2dhg_A TRNA selenocysteine ass 99.7 6.2E-17 2.1E-21 122.6 12.7 83 70-155 6-90 (104)
168 1s79_A Lupus LA protein; RRM, 99.7 2.3E-17 7.8E-22 124.0 10.1 78 70-149 8-85 (103)
169 2xnq_A Nuclear polyadenylated 99.7 3.6E-17 1.2E-21 121.9 11.1 79 269-349 17-96 (97)
170 2m2b_A RNA-binding protein 10; 99.7 2.7E-17 9.2E-22 130.0 11.1 84 68-154 18-107 (131)
171 2hgn_A Heterogeneous nuclear r 99.7 2.1E-18 7.2E-23 136.4 4.6 78 271-350 43-125 (139)
172 2dng_A Eukaryotic translation 99.7 5.6E-17 1.9E-21 122.5 12.1 80 269-350 10-95 (103)
173 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.8E-17 6.3E-22 120.5 9.1 82 163-245 4-85 (85)
174 1x5t_A Splicing factor 3B subu 99.7 1.9E-17 6.5E-22 123.5 9.3 86 164-250 3-89 (96)
175 1oo0_B CG8781-PA, drosophila Y 99.7 3E-17 1E-21 125.7 10.5 81 270-350 22-108 (110)
176 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.9E-17 6.4E-22 125.0 9.2 89 162-251 8-96 (102)
177 1x4e_A RNA binding motif, sing 99.7 1.2E-17 4E-22 121.5 7.8 79 71-151 3-81 (85)
178 2ywk_A Putative RNA-binding pr 99.7 2.1E-17 7.3E-22 122.9 9.3 78 270-347 12-94 (95)
179 2ywk_A Putative RNA-binding pr 99.7 1.7E-17 5.7E-22 123.5 8.7 83 68-153 11-93 (95)
180 2cqd_A RNA-binding region cont 99.7 3.9E-17 1.3E-21 126.3 11.0 85 67-154 11-95 (116)
181 3ns6_A Eukaryotic translation 99.7 5.3E-18 1.8E-22 127.2 5.7 83 165-248 5-94 (100)
182 2div_A TRNA selenocysteine ass 99.7 4.8E-17 1.6E-21 122.0 11.0 85 163-248 6-95 (99)
183 1x4h_A RNA-binding protein 28; 99.7 5.1E-17 1.7E-21 124.6 11.3 90 161-251 10-105 (111)
184 2dgp_A Bruno-like 4, RNA bindi 99.7 3.9E-17 1.3E-21 124.1 10.5 89 161-250 8-99 (106)
185 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.4E-17 5E-22 124.9 7.9 80 70-153 16-96 (100)
186 2fc9_A NCL protein; structure 99.7 1E-16 3.5E-21 120.6 12.6 82 269-350 10-93 (101)
187 2dgv_A HnRNP M, heterogeneous 99.7 8.3E-17 2.8E-21 118.9 11.6 80 70-153 5-84 (92)
188 2cpf_A RNA binding motif prote 99.7 3E-17 1E-21 122.9 9.2 86 164-250 3-91 (98)
189 1x4d_A Matrin 3; structural ge 99.7 3.6E-17 1.2E-21 121.9 9.4 80 70-155 12-92 (102)
190 2cqi_A Nucleolysin TIAR; RNA r 99.7 9.3E-17 3.2E-21 121.3 11.8 86 67-156 9-94 (103)
191 2a3j_A U1 small nuclear ribonu 99.7 4.2E-17 1.4E-21 127.1 10.0 80 271-350 26-112 (127)
192 2do0_A HnRNP M, heterogeneous 99.7 9.8E-17 3.3E-21 123.7 12.0 82 69-153 11-92 (114)
193 2cqp_A RNA-binding protein 12; 99.7 2.5E-17 8.4E-22 123.3 8.2 83 69-153 11-93 (98)
194 2cq3_A RNA-binding protein 9; 99.7 1.4E-16 4.7E-21 120.4 12.4 85 67-155 9-93 (103)
195 2cpe_A RNA-binding protein EWS 99.7 6.2E-17 2.1E-21 124.5 10.6 89 161-250 10-106 (113)
196 1oo0_B CG8781-PA, drosophila Y 99.7 4.2E-17 1.4E-21 124.9 9.4 87 161-248 21-107 (110)
197 3ex7_B RNA-binding protein 8A; 99.7 6.2E-17 2.1E-21 127.1 10.5 83 70-154 19-101 (126)
198 2cq1_A PTB-like protein L; RRM 99.7 7.6E-17 2.6E-21 120.3 10.4 82 69-156 11-92 (101)
199 2rs2_A Musashi-1, RNA-binding 99.7 3E-17 1E-21 125.2 8.4 85 67-154 19-103 (109)
200 2dh8_A DAZ-associated protein 99.7 5.3E-17 1.8E-21 123.1 9.7 82 269-351 11-98 (105)
201 3s7r_A Heterogeneous nuclear r 99.7 3.3E-17 1.1E-21 119.7 8.2 75 69-144 7-81 (87)
202 2dng_A Eukaryotic translation 99.7 8.1E-17 2.8E-21 121.6 10.5 87 161-250 10-96 (103)
203 1p1t_A Cleavage stimulation fa 99.7 2.2E-17 7.6E-22 125.1 7.3 83 70-154 5-87 (104)
204 1x5o_A RNA binding motif, sing 99.7 2.3E-16 8E-21 121.5 13.2 84 69-153 21-110 (114)
205 2ad9_A Polypyrimidine tract-bi 99.7 7.2E-17 2.5E-21 123.4 10.1 79 70-156 28-108 (119)
206 3ulh_A THO complex subunit 4; 99.7 6E-17 2.1E-21 123.3 9.7 81 69-152 25-105 (107)
207 2dh8_A DAZ-associated protein 99.7 8.4E-17 2.9E-21 122.0 10.4 88 161-250 11-98 (105)
208 3n9u_C Cleavage and polyadenyl 99.7 4.7E-17 1.6E-21 132.0 9.5 84 165-249 54-139 (156)
209 2dis_A Unnamed protein product 99.7 1.1E-16 3.8E-21 122.3 11.1 80 272-351 6-95 (109)
210 2cqp_A RNA-binding protein 12; 99.7 5.3E-17 1.8E-21 121.5 9.1 85 162-247 11-95 (98)
211 1s79_A Lupus LA protein; RRM, 99.7 4.7E-17 1.6E-21 122.3 8.8 82 163-247 8-89 (103)
212 2e5j_A Methenyltetrahydrofolat 99.7 1.3E-16 4.4E-21 119.0 11.2 80 270-350 15-96 (97)
213 1wez_A HnRNP H', FTP-3, hetero 99.7 7.6E-17 2.6E-21 121.1 9.9 80 69-153 11-90 (102)
214 2cq4_A RNA binding motif prote 99.7 2.2E-17 7.5E-22 127.3 7.1 82 69-153 21-102 (114)
215 1x4f_A Matrin 3; structural ge 99.7 1.1E-16 3.8E-21 120.9 10.7 81 69-155 21-102 (112)
216 2krb_A Eukaryotic translation 99.7 5.3E-17 1.8E-21 116.8 8.2 72 73-146 1-79 (81)
217 3ucg_A Polyadenylate-binding p 99.7 6.6E-17 2.3E-21 118.7 8.9 79 72-153 5-83 (89)
218 1nu4_A U1A RNA binding domain; 99.7 8.5E-17 2.9E-21 120.1 9.5 80 271-350 5-91 (97)
219 2dgw_A Probable RNA-binding pr 99.7 1.4E-16 4.7E-21 117.4 10.5 77 271-349 7-88 (91)
220 2khc_A Testis-specific RNP-typ 99.7 5.2E-17 1.8E-21 126.0 8.5 83 161-244 35-117 (118)
221 2fc8_A NCL protein; structure 99.7 2.5E-16 8.6E-21 118.7 12.1 81 270-350 11-94 (102)
222 2e5i_A Heterogeneous nuclear r 99.7 1.8E-16 6.3E-21 122.2 11.5 76 275-350 26-104 (124)
223 2kt5_A RNA and export factor-b 99.7 2.9E-16 9.8E-21 122.9 12.8 87 161-249 30-116 (124)
224 2ek1_A RNA-binding protein 12; 99.7 1.9E-17 6.6E-22 123.2 5.8 81 70-152 12-92 (95)
225 1wi8_A EIF-4B, eukaryotic tran 99.7 8.3E-17 2.8E-21 121.8 9.3 86 162-250 11-97 (104)
226 1x4e_A RNA binding motif, sing 99.7 3.1E-17 1.1E-21 119.3 6.7 81 164-245 3-83 (85)
227 1p1t_A Cleavage stimulation fa 99.7 8.6E-17 2.9E-21 121.8 9.4 86 165-251 7-92 (104)
228 4a8x_A RNA-binding protein wit 99.7 5.2E-17 1.8E-21 119.0 7.9 83 165-248 3-86 (88)
229 1wez_A HnRNP H', FTP-3, hetero 99.7 1.5E-16 5.2E-21 119.4 10.6 78 270-349 11-93 (102)
230 1wg1_A KIAA1579 protein, homol 99.7 7.9E-17 2.7E-21 117.8 8.7 76 273-349 4-79 (88)
231 3s7r_A Heterogeneous nuclear r 99.7 1.3E-16 4.5E-21 116.5 9.8 81 162-244 7-87 (87)
232 2m2b_A RNA-binding protein 10; 99.7 6.2E-17 2.1E-21 127.9 8.6 88 161-250 18-111 (131)
233 2err_A Ataxin-2-binding protei 99.7 4.9E-17 1.7E-21 124.0 7.7 83 67-153 23-105 (109)
234 2cqg_A TDP-43, TAR DNA-binding 99.7 3.7E-16 1.3E-20 118.0 12.5 81 269-351 10-96 (103)
235 3ucg_A Polyadenylate-binding p 99.7 1.2E-16 4.1E-21 117.3 9.5 80 166-247 6-85 (89)
236 2mss_A Protein (musashi1); RNA 99.7 4.9E-17 1.7E-21 115.2 7.1 72 75-147 1-72 (75)
237 2wbr_A GW182, gawky, LD47780P; 99.7 7.8E-17 2.7E-21 114.1 7.9 73 166-245 7-79 (89)
238 2mss_A Protein (musashi1); RNA 99.7 6.1E-17 2.1E-21 114.7 7.5 75 168-244 1-75 (75)
239 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.4E-17 1.5E-21 116.1 6.8 73 74-147 1-73 (77)
240 2ek1_A RNA-binding protein 12; 99.7 5.6E-17 1.9E-21 120.7 7.6 81 165-246 14-94 (95)
241 1x4b_A Heterogeneous nuclear r 99.7 1.3E-16 4.5E-21 123.3 9.9 77 273-350 26-108 (116)
242 3ulh_A THO complex subunit 4; 99.7 1.6E-16 5.4E-21 121.0 10.2 82 162-245 25-106 (107)
243 3pgw_S U1-70K; protein-RNA com 99.7 1E-17 3.5E-22 158.6 4.3 86 163-249 99-184 (437)
244 2e5g_A U6 snRNA-specific termi 99.7 2.8E-16 9.6E-21 116.5 11.2 78 273-351 7-85 (94)
245 2rs2_A Musashi-1, RNA-binding 99.7 7.6E-17 2.6E-21 122.9 8.3 87 161-249 20-106 (109)
246 2nlw_A Eukaryotic translation 99.7 1.9E-16 6.5E-21 119.9 10.4 79 271-349 12-101 (105)
247 1x4a_A Splicing factor, argini 99.7 5.4E-16 1.8E-20 118.4 13.0 83 68-155 17-99 (109)
248 2cpx_A Hypothetical protein FL 99.7 2.1E-16 7.3E-21 122.0 10.8 82 271-352 22-109 (115)
249 2dgw_A Probable RNA-binding pr 99.7 2.3E-16 7.8E-21 116.3 10.4 82 163-248 7-88 (91)
250 1wg5_A Heterogeneous nuclear r 99.7 2.2E-16 7.4E-21 119.3 10.3 80 70-153 12-92 (104)
251 2kt5_A RNA and export factor-b 99.7 2.9E-16 1E-20 122.8 11.3 83 69-154 31-113 (124)
252 1h2v_Z 20 kDa nuclear CAP bind 99.7 2E-16 6.8E-21 129.1 10.7 86 162-248 35-120 (156)
253 2jwn_A Embryonic polyadenylate 99.7 1.3E-16 4.4E-21 125.0 9.1 76 274-350 36-117 (124)
254 2dis_A Unnamed protein product 99.7 2E-16 6.9E-21 120.8 9.9 86 164-250 6-95 (109)
255 3zzy_A Polypyrimidine tract-bi 99.7 1.9E-16 6.7E-21 122.4 9.8 77 274-350 28-108 (130)
256 2diu_A KIAA0430 protein; struc 99.7 2E-16 6.7E-21 113.0 9.0 73 275-351 10-87 (96)
257 2cqg_A TDP-43, TAR DNA-binding 99.7 4.9E-16 1.7E-20 117.3 11.8 88 160-250 9-96 (103)
258 2e44_A Insulin-like growth fac 99.7 3E-16 1E-20 116.9 10.3 78 272-349 13-93 (96)
259 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.1E-16 7E-21 126.7 10.1 83 67-151 57-139 (140)
260 2cpy_A RNA-binding protein 12; 99.7 5.7E-17 1.9E-21 124.8 6.5 81 69-153 11-92 (114)
261 1uaw_A Mouse-musashi-1; RNP-ty 99.7 9E-17 3.1E-21 114.5 7.0 76 167-244 1-76 (77)
262 2a3j_A U1 small nuclear ribonu 99.7 3.5E-16 1.2E-20 121.8 10.9 80 70-154 26-109 (127)
263 1x5o_A RNA binding motif, sing 99.7 4.9E-16 1.7E-20 119.7 11.6 85 161-247 20-112 (114)
264 1sjr_A Polypyrimidine tract-bi 99.7 1.8E-16 6.2E-21 127.3 9.4 76 274-349 46-125 (164)
265 2ki2_A SS-DNA binding protein 99.7 5.5E-17 1.9E-21 119.4 5.9 77 74-153 2-78 (90)
266 2dgx_A KIAA0430 protein; RRM d 99.7 2.3E-16 7.9E-21 117.3 9.3 80 165-248 8-91 (96)
267 1why_A Hypothetical protein ri 99.7 7E-16 2.4E-20 115.1 12.0 80 70-155 14-93 (97)
268 2dnn_A RNA-binding protein 12; 99.7 8.3E-17 2.8E-21 121.9 7.0 72 70-144 13-84 (109)
269 3q2s_C Cleavage and polyadenyl 99.7 9.8E-17 3.4E-21 138.9 8.3 80 71-152 66-147 (229)
270 2la4_A Nuclear and cytoplasmic 99.7 6.9E-17 2.4E-21 121.6 6.4 76 70-153 24-99 (101)
271 1sjr_A Polypyrimidine tract-bi 99.7 3.9E-16 1.3E-20 125.4 11.1 82 71-156 44-125 (164)
272 2lmi_A GRSF-1, G-rich sequence 99.7 1.2E-16 4E-21 121.5 7.7 77 69-147 7-86 (107)
273 2hgl_A HNRPF protein, heteroge 99.7 9.2E-17 3.1E-21 126.6 6.9 79 69-151 40-121 (136)
274 2hgl_A HNRPF protein, heteroge 99.7 1.4E-16 4.9E-21 125.5 7.9 84 162-248 40-126 (136)
275 2db1_A Heterogeneous nuclear r 99.7 9.4E-17 3.2E-21 124.2 6.8 78 70-151 14-94 (118)
276 2cpi_A CCR4-NOT transcription 99.7 2E-16 6.8E-21 121.1 8.5 86 162-248 11-102 (111)
277 1x4b_A Heterogeneous nuclear r 99.7 1.6E-16 5.4E-21 122.8 7.9 84 165-250 26-109 (116)
278 2ki2_A SS-DNA binding protein 99.7 5.6E-17 1.9E-21 119.3 5.0 81 167-249 2-82 (90)
279 2lcw_A RNA-binding protein FUS 99.5 6.9E-18 2.4E-22 130.5 0.0 79 272-350 5-97 (116)
280 2dnq_A RNA-binding protein 4B; 99.7 1.1E-15 3.9E-20 112.2 11.9 76 70-155 5-80 (90)
281 1fjc_A Nucleolin RBD2, protein 99.7 4.3E-16 1.5E-20 116.0 9.7 79 271-350 13-93 (96)
282 2bz2_A Negative elongation fac 99.7 3.7E-16 1.3E-20 121.1 9.6 79 271-351 36-114 (121)
283 1wel_A RNA-binding protein 12; 99.7 2.2E-16 7.6E-21 123.4 8.4 80 70-152 22-101 (124)
284 2j76_E EIF-4B, EIF4B, eukaryot 99.7 8.4E-17 2.9E-21 120.7 5.7 82 163-247 16-98 (100)
285 2hgn_A Heterogeneous nuclear r 99.7 5.2E-17 1.8E-21 128.4 4.8 124 116-249 2-125 (139)
286 1wg5_A Heterogeneous nuclear r 99.7 3.4E-16 1.2E-20 118.2 9.0 83 163-248 12-95 (104)
287 2cpy_A RNA-binding protein 12; 99.7 1.7E-16 5.6E-21 122.2 7.4 87 162-251 11-98 (114)
288 1wel_A RNA-binding protein 12; 99.7 1.6E-16 5.6E-21 124.2 7.3 85 163-249 22-106 (124)
289 2db1_A Heterogeneous nuclear r 99.7 2.7E-16 9.1E-21 121.6 8.3 83 163-248 14-99 (118)
290 2cq4_A RNA binding motif prote 99.7 1.1E-16 3.9E-21 123.2 6.2 84 165-250 24-107 (114)
291 2hzc_A Splicing factor U2AF 65 99.6 3.5E-16 1.2E-20 114.2 8.3 71 273-344 5-86 (87)
292 3d2w_A TAR DNA-binding protein 99.6 6.3E-16 2.1E-20 113.0 9.6 77 270-350 7-86 (89)
293 2nlw_A Eukaryotic translation 99.6 4E-16 1.4E-20 118.1 8.8 84 162-248 11-101 (105)
294 1iqt_A AUF1, heterogeneous nuc 99.6 1.2E-16 4.2E-21 113.1 5.5 73 75-148 1-73 (75)
295 1x4c_A Splicing factor, argini 99.6 1.1E-15 3.6E-20 116.4 11.1 80 70-156 12-94 (108)
296 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 5.5E-16 1.9E-20 124.1 9.9 84 160-244 57-140 (140)
297 2e5j_A Methenyltetrahydrofolat 99.6 1.6E-15 5.3E-20 113.1 11.5 77 70-153 16-92 (97)
298 2dnn_A RNA-binding protein 12; 99.6 2.8E-16 9.5E-21 119.0 7.4 79 166-248 16-94 (109)
299 2fc8_A NCL protein; structure 99.6 9.3E-16 3.2E-20 115.6 10.1 87 160-250 9-95 (102)
300 1wf0_A TDP-43, TAR DNA-binding 99.6 4.3E-16 1.5E-20 113.9 8.0 76 273-350 4-80 (88)
301 2krb_A Eukaryotic translation 99.6 2.9E-16 1E-20 112.9 6.7 73 167-242 2-81 (81)
302 2jwn_A Embryonic polyadenylate 99.6 5.5E-16 1.9E-20 121.3 8.8 82 165-248 35-116 (124)
303 1fj7_A Nucleolin RBD1, protein 99.6 1.3E-16 4.6E-21 120.0 5.0 84 163-249 14-97 (101)
304 2ytc_A PRE-mRNA-splicing facto 99.6 9.1E-16 3.1E-20 111.5 9.3 76 69-152 8-84 (85)
305 2cpx_A Hypothetical protein FL 99.6 3.8E-16 1.3E-20 120.5 7.6 88 163-251 22-109 (115)
306 2hgm_A HNRPF protein, heteroge 99.6 6.4E-16 2.2E-20 119.7 8.6 75 70-147 39-115 (126)
307 2e5i_A Heterogeneous nuclear r 99.6 3.7E-15 1.3E-19 114.9 12.6 79 72-156 24-103 (124)
308 2cpj_A Non-POU domain-containi 99.6 1.5E-15 5.2E-20 113.7 10.2 82 161-249 10-91 (99)
309 2xnq_A Nuclear polyadenylated 99.6 1.2E-15 4E-20 113.6 9.4 74 70-153 19-93 (97)
310 2lmi_A GRSF-1, G-rich sequence 99.6 2.8E-16 9.5E-21 119.4 6.1 83 163-248 8-93 (107)
311 1iqt_A AUF1, heterogeneous nuc 99.6 3.1E-16 1.1E-20 111.0 5.9 75 168-244 1-75 (75)
312 3zzy_A Polypyrimidine tract-bi 99.6 9.2E-16 3.1E-20 118.6 8.7 82 70-156 25-107 (130)
313 2fc9_A NCL protein; structure 99.6 1E-15 3.4E-20 115.2 8.7 83 162-249 11-93 (101)
314 1fj7_A Nucleolin RBD1, protein 99.6 1.8E-15 6.1E-20 113.8 9.9 79 271-351 14-98 (101)
315 3u1l_A PRE-mRNA-splicing facto 99.6 9.1E-16 3.1E-20 131.8 9.2 81 271-351 131-232 (240)
316 2dha_A FLJ20171 protein; RRM d 99.6 5.4E-16 1.8E-20 119.9 7.0 82 165-249 22-107 (123)
317 2jvr_A Nucleolar protein 3; RN 99.6 8.2E-16 2.8E-20 116.6 7.8 78 165-247 27-105 (111)
318 2dha_A FLJ20171 protein; RRM d 99.6 4E-16 1.4E-20 120.7 6.0 71 71-143 21-95 (123)
319 2f3j_A RNA and export factor b 99.6 1.7E-15 5.9E-20 125.6 10.2 82 69-153 84-165 (177)
320 2kvi_A Nuclear polyadenylated 99.6 2.6E-15 9E-20 111.6 10.1 73 70-150 7-80 (96)
321 2jvo_A Nucleolar protein 3; nu 99.6 2E-15 6.8E-20 114.6 9.6 81 160-249 25-105 (108)
322 2j8a_A Histone-lysine N-methyl 99.6 1.2E-15 4.2E-20 115.3 7.9 81 167-248 3-97 (136)
323 2dgt_A RNA-binding protein 30; 99.6 3.5E-15 1.2E-19 110.1 10.2 81 161-250 5-85 (92)
324 1x4g_A Nucleolysin TIAR; struc 99.6 2.6E-15 9.1E-20 114.5 9.4 81 163-250 22-102 (109)
325 2cq2_A Hypothetical protein LO 99.6 1.5E-15 5.2E-20 114.7 7.8 78 70-153 22-104 (114)
326 2xs2_A Deleted in azoospermia- 99.6 4.6E-16 1.6E-20 117.3 4.9 79 70-153 6-84 (102)
327 1whx_A Hypothetical protein ri 99.6 1.2E-15 3.9E-20 116.6 7.2 77 70-154 7-83 (111)
328 2hgm_A HNRPF protein, heteroge 99.6 7.8E-16 2.7E-20 119.2 6.2 81 163-247 39-121 (126)
329 2j8a_A Histone-lysine N-methyl 99.6 5.4E-16 1.9E-20 117.3 5.1 78 74-151 3-94 (136)
330 2lcw_A RNA-binding protein FUS 99.4 6.5E-17 2.2E-21 125.0 0.0 87 163-250 4-98 (116)
331 2dnl_A Cytoplasmic polyadenyla 99.6 2E-15 6.9E-20 116.0 8.3 65 70-135 5-72 (114)
332 2dgu_A Heterogeneous nuclear r 99.6 5.4E-15 1.9E-19 111.5 10.5 80 163-251 8-87 (103)
333 1wf1_A RNA-binding protein RAL 99.6 4.7E-15 1.6E-19 113.3 10.1 79 162-249 23-102 (110)
334 2f3j_A RNA and export factor b 99.6 4.1E-15 1.4E-19 123.3 10.3 86 162-249 84-169 (177)
335 3d2w_A TAR DNA-binding protein 99.6 1.5E-15 5E-20 111.0 6.6 75 71-154 9-83 (89)
336 2dnp_A RNA-binding protein 14; 99.6 4.5E-15 1.5E-19 109.0 8.9 79 162-249 5-83 (90)
337 3beg_B Splicing factor, argini 99.6 3.5E-15 1.2E-19 114.8 8.6 67 71-144 14-80 (115)
338 2cpd_A Apobec-1 stimulating pr 99.6 1E-14 3.5E-19 109.1 10.9 80 161-249 10-91 (99)
339 3egn_A RNA-binding protein 40; 99.6 1.9E-15 6.4E-20 121.4 7.3 81 271-351 42-133 (143)
340 1nu4_A U1A RNA binding domain; 99.6 1.5E-15 5.2E-20 113.3 6.2 84 163-250 5-92 (97)
341 2cqh_A IGF-II mRNA-binding pro 99.6 3.9E-15 1.3E-19 110.1 8.1 80 163-250 5-86 (93)
342 2diu_A KIAA0430 protein; struc 99.6 1.9E-14 6.5E-19 102.8 11.2 71 72-154 7-83 (96)
343 1fjc_A Nucleolin RBD2, protein 99.6 1.9E-15 6.6E-20 112.4 6.3 82 162-249 12-93 (96)
344 2xs2_A Deleted in azoospermia- 99.6 1.4E-15 4.6E-20 114.7 5.3 81 165-249 8-88 (102)
345 2e44_A Insulin-like growth fac 99.6 7.5E-15 2.6E-19 109.2 8.9 80 164-248 13-93 (96)
346 1wg1_A KIAA1579 protein, homol 99.6 6.7E-15 2.3E-19 107.5 7.6 76 165-248 4-79 (88)
347 2e5g_A U6 snRNA-specific termi 99.6 1.3E-14 4.4E-19 107.4 9.3 78 165-249 7-84 (94)
348 2pe8_A Splicing factor 45; RRM 99.6 1.8E-14 6.3E-19 108.2 10.1 76 272-347 6-93 (105)
349 1x5p_A Negative elongation fac 99.6 3.4E-14 1.1E-18 105.8 10.8 80 162-250 11-90 (97)
350 2hzc_A Splicing factor U2AF 65 99.5 6.4E-15 2.2E-19 107.4 6.8 71 70-147 3-84 (87)
351 1wf0_A TDP-43, TAR DNA-binding 99.5 7.4E-15 2.5E-19 107.3 6.7 78 70-156 2-79 (88)
352 2dit_A HIV TAT specific factor 99.5 8.2E-14 2.8E-18 106.6 12.5 82 270-351 11-105 (112)
353 3egn_A RNA-binding protein 40; 99.5 4.3E-15 1.5E-19 119.3 5.5 84 163-250 42-133 (143)
354 2pe8_A Splicing factor 45; RRM 99.5 3.5E-14 1.2E-18 106.7 9.5 84 164-248 6-95 (105)
355 2voo_A Lupus LA protein; RNA-b 99.5 9.5E-14 3.3E-18 116.8 12.0 75 274-349 109-188 (193)
356 2dnl_A Cytoplasmic polyadenyla 99.5 2.6E-14 8.8E-19 109.8 7.8 78 164-245 6-86 (114)
357 2voo_A Lupus LA protein; RNA-b 99.5 5.4E-14 1.9E-18 118.3 8.8 121 124-247 63-187 (193)
358 3u1l_A PRE-mRNA-splicing facto 99.5 7.8E-14 2.7E-18 119.8 9.8 81 70-156 131-230 (240)
359 2bz2_A Negative elongation fac 99.5 1E-13 3.4E-18 107.3 9.5 79 162-249 35-113 (121)
360 3v4m_A Splicing factor U2AF 65 99.5 1.2E-13 4E-18 103.9 9.4 76 272-347 3-96 (105)
361 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.1E-12 3.7E-17 97.2 12.4 66 284-351 27-93 (100)
362 3tht_A Alkylated DNA repair pr 99.4 2.8E-13 9.4E-18 122.8 9.8 77 270-346 14-97 (345)
363 3ue2_A Poly(U)-binding-splicin 99.4 5.6E-13 1.9E-17 102.0 8.8 75 273-347 19-108 (118)
364 2dit_A HIV TAT specific factor 99.4 1.3E-12 4.3E-17 99.9 10.2 84 161-249 10-104 (112)
365 1jmt_A Splicing factor U2AF 35 99.4 1.7E-13 5.9E-18 102.8 4.7 67 279-345 20-103 (104)
366 3v4m_A Splicing factor U2AF 65 99.4 4.6E-13 1.6E-17 100.6 6.6 84 164-248 3-98 (105)
367 3s6e_A RNA-binding protein 39; 99.4 1.6E-12 5.4E-17 98.8 9.1 75 273-347 6-92 (114)
368 3ue2_A Poly(U)-binding-splicin 99.4 8.4E-13 2.9E-17 101.1 7.3 82 165-247 19-109 (118)
369 1owx_A Lupus LA protein, SS-B, 99.3 6.4E-12 2.2E-16 95.3 10.6 78 269-346 13-94 (121)
370 1jmt_A Splicing factor U2AF 35 99.3 2.8E-13 9.5E-18 101.7 2.9 72 171-244 20-103 (104)
371 3tht_A Alkylated DNA repair pr 99.3 1.6E-12 5.5E-17 117.8 7.8 114 67-189 12-131 (345)
372 2d9o_A DNAJ (HSP40) homolog, s 99.3 2.2E-11 7.7E-16 90.1 12.5 78 70-156 7-91 (100)
373 2dnr_A Synaptojanin-1; RRM dom 99.3 1E-11 3.5E-16 87.9 8.5 75 271-348 4-86 (91)
374 3s6e_A RNA-binding protein 39; 99.2 4.9E-11 1.7E-15 90.5 8.6 80 164-248 5-94 (114)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 6.8E-11 2.3E-15 84.0 6.4 76 269-347 10-94 (95)
376 1owx_A Lupus LA protein, SS-B, 99.0 1E-09 3.5E-14 83.2 8.4 63 70-138 15-79 (121)
377 2l9w_A U4/U6 snRNA-associated- 98.9 3.4E-09 1.2E-13 76.6 8.1 70 274-343 21-95 (117)
378 2dnr_A Synaptojanin-1; RRM dom 98.8 4.8E-09 1.7E-13 74.2 6.1 72 166-247 7-86 (91)
379 3dxb_A Thioredoxin N-terminall 98.8 1E-08 3.5E-13 88.3 7.3 61 286-346 141-211 (222)
380 3dxb_A Thioredoxin N-terminall 98.7 1.8E-08 6.2E-13 86.8 7.8 69 178-247 141-213 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.7 2.3E-08 7.7E-13 71.1 6.4 71 165-245 14-93 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.6 4.5E-07 1.5E-11 65.6 9.1 72 166-244 21-97 (117)
383 1wey_A Calcipressin 1; structu 98.2 7.1E-06 2.4E-10 59.4 8.3 75 274-348 5-84 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.2 2.7E-05 9.2E-10 56.0 10.7 74 273-349 7-85 (104)
385 2dhx_A Poly (ADP-ribose) polym 98.2 2.7E-05 9.3E-10 56.0 10.6 90 70-179 5-99 (104)
386 1uw4_A UPF3X; nonsense mediate 98.0 2.6E-05 8.9E-10 55.6 7.5 70 74-143 2-73 (91)
387 1wwh_A Nucleoporin 35, nucleop 97.8 9.4E-05 3.2E-09 55.1 7.9 72 273-346 23-95 (119)
388 1whv_A Poly(A)-specific ribonu 97.7 0.00014 5E-09 51.5 8.0 58 70-136 13-70 (100)
389 1wey_A Calcipressin 1; structu 97.7 0.00012 4.1E-09 53.0 6.8 75 71-153 3-82 (104)
390 1uw4_A UPF3X; nonsense mediate 97.5 0.00055 1.9E-08 48.7 8.3 72 275-346 2-86 (91)
391 1whv_A Poly(A)-specific ribonu 97.4 0.00099 3.4E-08 47.3 8.4 56 273-331 15-70 (100)
392 2l08_A Regulator of nonsense t 97.4 0.00014 4.8E-09 52.0 3.8 70 73-142 9-80 (97)
393 3ctr_A Poly(A)-specific ribonu 97.3 0.00027 9.4E-09 50.3 4.7 54 74-136 7-60 (101)
394 3p3d_A Nucleoporin 53; structu 97.2 0.00038 1.3E-08 52.6 4.8 70 275-346 8-97 (132)
395 3ctr_A Poly(A)-specific ribonu 97.1 0.001 3.6E-08 47.3 5.5 54 275-331 7-60 (101)
396 1wwh_A Nucleoporin 35, nucleop 97.0 0.0018 6E-08 48.3 6.7 64 70-141 21-84 (119)
397 2l08_A Regulator of nonsense t 97.0 0.003 1E-07 45.2 7.4 73 274-346 9-94 (97)
398 3pq1_A Poly(A) RNA polymerase; 96.5 0.0015 5.2E-08 61.2 3.5 55 73-133 53-107 (464)
399 3pq1_A Poly(A) RNA polymerase; 96.0 0.0031 1.1E-07 59.2 3.2 53 275-328 54-107 (464)
400 3p3d_A Nucleoporin 53; structu 95.0 0.019 6.5E-07 43.3 3.5 69 72-142 6-88 (132)
401 3d45_A Poly(A)-specific ribonu 92.7 0.41 1.4E-05 45.8 8.9 57 72-137 439-495 (507)
402 3d45_A Poly(A)-specific ribonu 87.4 1.7 5.9E-05 41.5 8.3 56 274-332 440-495 (507)
403 2g0c_A ATP-dependent RNA helic 84.0 3 0.0001 28.0 6.0 60 284-346 11-75 (76)
404 4eyt_A Telomerase associated p 77.2 14 0.00047 25.4 7.2 68 274-343 12-86 (129)
405 3fry_A Probable copper-exporti 64.5 17 0.00057 23.6 5.6 54 275-329 7-60 (73)
406 1xn9_A 30S ribosomal protein S 62.9 27 0.00091 25.0 6.5 49 176-225 28-80 (101)
407 2v94_A RPS24, 30S ribosomal pr 62.4 9.3 0.00032 27.6 4.0 49 176-225 37-89 (107)
408 2pk2_A Cyclin-T1, protein TAT; 60.7 1.8 6.1E-05 39.4 0.0 13 284-296 227-239 (358)
409 1ywx_A 30S ribosomal protein S 57.3 50 0.0017 23.6 7.1 49 176-225 28-80 (102)
410 2g1d_A 30S ribosomal protein S 56.5 8.4 0.00029 27.4 2.9 48 176-224 29-80 (98)
411 2xzm_P RPS24E; ribosome, trans 55.5 17 0.00057 27.9 4.6 49 176-225 31-83 (149)
412 3lpe_A Putative transcription 53.2 54 0.0019 22.8 7.1 31 100-135 40-70 (92)
413 4a4j_A Pacszia, cation-transpo 52.7 35 0.0012 21.4 5.6 55 275-329 4-61 (69)
414 3dxs_X Copper-transporting ATP 52.1 44 0.0015 21.4 6.2 56 275-330 4-63 (74)
415 4eyt_A Telomerase associated p 51.8 55 0.0019 22.4 8.1 60 71-138 10-69 (129)
416 3u5c_Y RP50, 40S ribosomal pro 50.1 56 0.0019 24.6 6.6 49 176-225 33-85 (135)
417 1yg0_A COP associated protein; 37.9 66 0.0023 19.4 6.3 54 276-329 4-60 (66)
418 1q8l_A Copper-transporting ATP 37.1 87 0.003 20.5 7.3 56 275-330 11-70 (84)
419 2g9o_A Copper-transporting ATP 36.9 94 0.0032 20.9 6.1 56 275-330 5-64 (90)
420 2xmw_A PACS-N, cation-transpor 34.8 79 0.0027 19.4 6.9 54 276-329 6-62 (71)
421 3fry_A Probable copper-exporti 33.5 93 0.0032 19.8 6.2 56 73-135 6-61 (73)
422 1aw0_A Menkes copper-transport 31.9 91 0.0031 19.2 5.4 55 276-330 6-64 (72)
423 2l3m_A Copper-ION-binding prot 31.2 93 0.0032 19.1 6.6 55 275-329 7-65 (71)
424 1osd_A MERP, hypothetical prot 30.2 98 0.0034 19.0 6.8 54 276-329 6-63 (72)
425 4e8u_A Putative uncharacterize 30.1 93 0.0032 24.5 5.3 49 75-126 14-73 (172)
426 2i9x_A Putative septation prot 29.5 64 0.0022 22.2 3.8 25 99-123 5-29 (87)
427 1cpz_A Protein (COPZ); copper 29.2 98 0.0033 18.7 7.5 54 276-329 3-60 (68)
428 2kt2_A Mercuric reductase; nme 28.4 1E+02 0.0036 18.8 6.4 54 276-329 3-59 (69)
429 2ofg_X Zinc-transporting ATPas 28.2 1.6E+02 0.0054 20.8 7.8 55 275-329 10-68 (111)
430 1kvi_A Copper-transporting ATP 27.9 1.2E+02 0.004 19.2 6.1 56 275-330 10-69 (79)
431 1y3j_A Copper-transporting ATP 27.9 1.2E+02 0.004 19.2 5.9 55 276-330 6-64 (77)
432 2e5p_A Protein PHF1, PHD finge 27.9 51 0.0018 21.2 2.8 20 299-320 28-47 (68)
433 4e8u_A Putative uncharacterize 26.9 1.8E+02 0.006 23.0 6.4 52 277-328 15-81 (172)
434 1fme_A FSD-EY peptide; beta-BE 26.1 33 0.0011 17.0 1.3 12 86-97 14-25 (28)
435 2ia9_A Putative septation prot 25.7 80 0.0027 22.4 3.8 25 99-123 5-29 (100)
436 1fvq_A Copper-transporting ATP 25.0 1.2E+02 0.0042 18.5 6.4 55 276-330 5-62 (72)
437 2eqj_A Metal-response element- 24.5 63 0.0022 20.9 2.8 19 299-319 32-50 (66)
438 3eiv_A Single-stranded DNA-bin 24.5 8.7 0.0003 31.4 -1.5 8 341-348 114-121 (199)
439 2i9z_A Putative septation prot 24.3 89 0.003 22.4 3.9 25 99-123 5-29 (105)
440 3ts2_A Protein LIN-28 homolog 24.2 28 0.00096 26.8 1.4 28 289-318 2-29 (148)
441 3h7h_B Transcription elongatio 24.1 1.3E+02 0.0045 21.5 4.9 32 100-136 41-72 (106)
442 1p6t_A Potential copper-transp 24.0 2.2E+02 0.0075 21.0 7.0 56 275-330 76-135 (151)
443 3cjk_B Copper-transporting ATP 23.8 1.4E+02 0.0047 18.6 6.9 54 276-329 5-62 (75)
444 3iz6_U 40S ribosomal protein S 23.6 30 0.001 26.2 1.4 48 176-224 38-90 (138)
445 2cu1_A Mitogen-activated prote 23.2 1.5E+02 0.005 21.0 4.6 54 170-231 20-73 (103)
446 3j21_T 50S ribosomal protein L 22.7 98 0.0034 21.2 3.8 53 277-329 25-82 (86)
447 1mwy_A ZNTA; open-faced beta-s 22.6 1.5E+02 0.005 18.4 7.8 55 276-330 6-62 (73)
448 2kyz_A Heavy metal binding pro 21.7 90 0.0031 19.1 3.4 52 276-328 4-55 (67)
449 3iwl_A Copper transport protei 21.7 1.5E+02 0.0052 18.3 5.6 53 275-329 4-57 (68)
450 1yjr_A Copper-transporting ATP 21.5 1.5E+02 0.0052 18.2 7.8 45 275-319 6-50 (75)
451 2qif_A Copper chaperone COPZ; 21.0 1.4E+02 0.0048 17.7 6.9 54 276-329 5-62 (69)
452 1x8d_A Hypothetical protein YI 20.8 2.1E+02 0.0073 20.3 5.4 33 89-124 28-60 (104)
453 2lfv_A Protein DAMX; cell divi 26.1 21 0.00072 25.8 0.0 61 74-138 26-87 (106)
454 2crl_A Copper chaperone for su 20.4 2.1E+02 0.0073 19.5 6.1 54 275-329 21-75 (98)
455 2i9x_A Putative septation prot 20.3 1.2E+02 0.0042 20.8 3.8 26 193-218 5-30 (87)
456 2m0o_A PHD finger protein 1; t 20.1 86 0.0029 20.8 2.8 20 299-320 45-64 (79)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=6.1e-46 Score=336.79 Aligned_cols=240 Identities=18% Similarity=0.309 Sum_probs=216.3
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
.+++|||+|||+++|+++|+++|+.|| |.+|++ ++++|||||+|.+.++|.+|++.|++..+.++ .+.+.+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~--~i~v~~ 91 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRER--ELSVQL 91 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCe--EEEEEe
Confidence 468999999999999999999999999 999988 33789999999999999999999999998754 445554
Q ss_pred cccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 015468 152 ATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (406)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 231 (406)
+. ..++|||+|||.++++++|+++|+. ||.|..+.++.+..+++++|+|||+|.+.++|.+|++.|++
T Consensus 92 ~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~ 159 (284)
T 3smz_A 92 QP-----------TDALLCVANLPPSLTQQQFEELVRP-FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159 (284)
T ss_dssp CC-----------CSCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cC-----------CCCEEEEcCCCCcCCHHHHHHHHHh-cCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 32 3359999999999999999999998 99999999999988999999999999999999999999999
Q ss_pred cccCCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccC-cHHHHHhhhccCCceEEEEeeCC-
Q 015468 232 VLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSV-TDDILKTVFGQYGELVHVKIPAG- 309 (406)
Q Consensus 232 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~G~v~~v~i~~~- 309 (406)
..+.|+.|.|.++.++.... .....++|||+|||.++ ++++|+++|+.||.|.+|.|.++
T Consensus 160 ~~~~g~~i~v~~a~~~~~~~------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~ 221 (284)
T 3smz_A 160 KPLGPRTLYVHWTDAGQLTP------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ 221 (284)
T ss_dssp CEETTEECEEEECCGGGCCT------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS
T ss_pred CEeCCcEEEEEECCCCCCCc------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC
Confidence 99999999999987754321 22456889999999995 99999999999999999999875
Q ss_pred ----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 310 ----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 310 ----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
+++|||+|.+.++|.+|+..|||..++|+.|+|+|++++..
T Consensus 222 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 222 DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 78999999999999999999999999999999999987654
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.1e-45 Score=334.68 Aligned_cols=249 Identities=15% Similarity=0.306 Sum_probs=207.1
Q ss_pred CCCCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 015468 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (406)
Q Consensus 66 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 145 (406)
........++|||+|||+++|+++|+++|+.||.|.+|+|+++... ++|||||+|.+.++|.+|++ +++..+.++.
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~- 109 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNE- 109 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEE-
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcE-
Confidence 3445677899999999999999999999999999999999998633 58999999999999999995 9999887644
Q ss_pred cceecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCC-CccEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 015468 146 NFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS-SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLR 224 (406)
Q Consensus 146 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 224 (406)
+.+.++ ..++|||+|||.++++++|+++|+. || .|..+.++.+.. ++++|+|||+|.+.++|.+
T Consensus 110 -i~v~~~------------~~~~l~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 110 -IIVSHL------------TECTLWMTNFPPSYTQRNIRDLLQD-INVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp -CEEEEC------------CSCEEEEECCCTTCCHHHHHHHHHH-TTCCCCEEECC--------CCEEEEECSSHHHHHH
T ss_pred -EEEEEC------------CCCEEEEECCCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHH
Confidence 444443 2459999999999999999999998 99 999999998854 8899999999999999999
Q ss_pred HHHHhcCcccCCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCcc-CcHHHHHhhhccCCceEE
Q 015468 225 SMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPS-VTDDILKTVFGQYGELVH 303 (406)
Q Consensus 225 a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~v~~ 303 (406)
|++.|++..+.|+.|.|.++.+....... .......++|||+|||.. +++++|+++|+.||.|.+
T Consensus 175 A~~~l~g~~~~g~~l~v~~a~~~~~~~~~--------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~ 240 (292)
T 2ghp_A 175 CVEKLNGLKIEGYTLVTKVSNPLEKSKRT--------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEK 240 (292)
T ss_dssp HHHHHTTCEETTEECEEEECCCC-----------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEE
T ss_pred HHHHhCCCEeCCcEEEEEECCCCcccccc--------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeE
Confidence 99999999999999999998876543211 123455689999999999 999999999999999999
Q ss_pred EEeeCC-------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 304 VKIPAG-------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 304 v~i~~~-------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
|.|+++ +|+|||+|.+.++|.+|+ .|||..|+|+.|+|+|++++
T Consensus 241 v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 241 INIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999764 679999999999999999 99999999999999999975
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.2e-34 Score=249.01 Aligned_cols=167 Identities=28% Similarity=0.463 Sum_probs=150.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
..+.++|||+|||+++++++|+++|++ ||.|.+|+|++|..+++++|||||+|.+.++|.+|++.+++..+.|+.|++.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSP-AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 345679999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC----CcEEEEEeC
Q 015468 243 PAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG----KRCGFVQFA 318 (406)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~----~~~afV~f~ 318 (406)
++........ ....+|||+||+..+++++|+++|+.||.|++|+|+++ +|+|||+|.
T Consensus 91 ~~~~~~~~~~-------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~ 151 (213)
T 4f02_A 91 WSQRDPSLRK-------------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFE 151 (213)
T ss_dssp ECCCCTHHHH-------------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEES
T ss_pred cccccccccc-------------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeC
Confidence 8866543321 12367999999999999999999999999999999764 689999999
Q ss_pred CHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 319 NRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 319 ~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
+.++|.+|++.|||..|+|+.|+|++++++.
T Consensus 152 ~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 152 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 9999999999999999999999999998754
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=9e-35 Score=251.47 Aligned_cols=172 Identities=31% Similarity=0.510 Sum_probs=149.8
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++..+.++ .+++.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~--~i~~~ 90 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK--PVRIM 90 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc--ccccc
Confidence 4468999999999999999999999999999999999999999999999999999999999999999988654 44555
Q ss_pred ccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 015468 151 WATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230 (406)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 230 (406)
++..... .......+|||+||++++++++|+++|++ ||.|..+.|+.+. +.++|||||+|.+.++|.+|++.||
T Consensus 91 ~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 91 WSQRDPS---LRKSGVGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp ECCCCTH---HHHHCTTEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ccccccc---ccccccccceECCcccccHHHHHHHHHhh-cCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhC
Confidence 4432221 11223458999999999999999999998 9999999999984 5589999999999999999999999
Q ss_pred CcccCCcceEeCcCcccccc
Q 015468 231 GVLCSTRPMRIGPAATKKAA 250 (406)
Q Consensus 231 g~~~~g~~i~v~~~~~~~~~ 250 (406)
+..|.|+.|.|.++.++..+
T Consensus 165 g~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 165 GMLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp TCEETTEECEEEECCCHHHH
T ss_pred CCEECCEEEEEEEcCCCccc
Confidence 99999999999999876543
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=6.8e-33 Score=236.96 Aligned_cols=173 Identities=21% Similarity=0.365 Sum_probs=146.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
.....++|||+|||+++++++|+++|+. ||.|.+|.++.+..+++++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 4456679999999999999999999998 99999999999988999999999999999999999965 889999999999
Q ss_pred CcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEE
Q 015468 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFV 315 (406)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV 315 (406)
.++........ .......++|||+|||.++++++|+++|+.||.|.+|.|..+ +|+|||
T Consensus 87 ~~~~~~~~~~~---------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 151 (196)
T 1l3k_A 87 KRAVSREDSQR---------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151 (196)
T ss_dssp EECCC--------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEE
T ss_pred ecccCcccccc---------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEE
Confidence 99876543221 122345589999999999999999999999999999999865 689999
Q ss_pred EeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCCCC
Q 015468 316 QFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQ 352 (406)
Q Consensus 316 ~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 352 (406)
+|.+.++|.+|+.. ++..|+|+.|+|+++.++....
T Consensus 152 ~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 152 TFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred EECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 99999999999986 8999999999999999876544
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=8.9e-33 Score=230.22 Aligned_cols=165 Identities=24% Similarity=0.506 Sum_probs=149.9
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
++++|||+|||+++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..+.+ ..+.+.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN--KRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC--cEEEEEe
Confidence 46899999999999999999999999999999999998899999999999999999999999999999965 5566666
Q ss_pred cccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 015468 152 ATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (406)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 231 (406)
+.... .....++|||+|||.++++++|+++|++ ||.|..+.+..+..+++++|+|||+|.+.++|.+|++.|++
T Consensus 80 ~~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 80 ARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp CCCCS-----STTTTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCc-----ccCCCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 55332 2345679999999999999999999998 99999999999988899999999999999999999999999
Q ss_pred cccCC--cceEeCcC
Q 015468 232 VLCST--RPMRIGPA 244 (406)
Q Consensus 232 ~~~~g--~~i~v~~~ 244 (406)
..+.| +.|+|.++
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99987 99999875
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.1e-32 Score=229.41 Aligned_cols=164 Identities=27% Similarity=0.491 Sum_probs=147.6
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceeccc
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~ 152 (406)
+++|||+|||+++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++.|++..+.+ ..+.+.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC--ceEEEEec
Confidence 5899999999999999999999999999999999998899999999999999999999999999999865 45555555
Q ss_pred ccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 015468 153 TYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV 232 (406)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~ 232 (406)
.... .....++|||+|||.++++++|+++|++ ||.|..+.+..+..+++++|+|||+|.+.++|.+|++.||+.
T Consensus 80 ~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 80 RPSS-----ASIRDANLYVSGLPKTMTQKELEQLFSQ-YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CCCC-----GGGTTCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCc-----ccCCCCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 4322 2234568999999999999999999998 999999999999888999999999999999999999999999
Q ss_pred ccCCcc--eEeCcC
Q 015468 233 LCSTRP--MRIGPA 244 (406)
Q Consensus 233 ~~~g~~--i~v~~~ 244 (406)
.+.|+. |+|.|+
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999975 777764
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-33 Score=229.77 Aligned_cols=165 Identities=33% Similarity=0.570 Sum_probs=148.2
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecccc
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~ 153 (406)
|+|||+|||+++|+++|+++|+.||.|.+|++++++ +++++|||||+|.+.++|.+|++.|++..+.+ ..+.+.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIEN--NIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC--CeeEEEEcC
Confidence 689999999999999999999999999999999986 57799999999999999999999999999965 455555554
Q ss_pred cCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 015468 154 YGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (406)
Q Consensus 154 ~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 233 (406)
.... ......++|||+|||.++++++|+++|++ ||.|..+.+..+..++.++|+|||+|.+.++|.+|++.|++..
T Consensus 78 ~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 78 QSQQ---SSSDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CCCC---CCCTTCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCC---CCCCCCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 3322 34456679999999999999999999998 9999999999998899999999999999999999999999999
Q ss_pred cCCcceEeCcCc
Q 015468 234 CSTRPMRIGPAA 245 (406)
Q Consensus 234 ~~g~~i~v~~~~ 245 (406)
+.|+.|+|.|+.
T Consensus 154 ~~g~~i~v~~a~ 165 (166)
T 3md3_A 154 LNGRPLRINWAA 165 (166)
T ss_dssp ETTEECEEEESC
T ss_pred cCCcEEEEEecC
Confidence 999999999975
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=7.7e-33 Score=236.62 Aligned_cols=178 Identities=20% Similarity=0.363 Sum_probs=147.7
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.....++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++. ++..+.++ .+.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~--~l~ 85 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR--VVE 85 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE--ECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE--Eee
Confidence 456789999999999999999999999999999999999998999999999999999999999984 77777654 444
Q ss_pred ecccccCCCC-CcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015468 149 LNWATYGAGE-RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (406)
Q Consensus 149 ~~~~~~~~~~-~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 227 (406)
+.++...... ........++|||+|||.++++++|+++|+. ||.|..+.++.+..+++++|+|||+|.+.++|.+|++
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 5544432211 1223345679999999999999999999998 9999999999998899999999999999999999997
Q ss_pred HhcCcccCCcceEeCcCccccccc
Q 015468 228 EMNGVLCSTRPMRIGPAATKKAAT 251 (406)
Q Consensus 228 ~l~g~~~~g~~i~v~~~~~~~~~~ 251 (406)
. ++..+.|+.|.|.++.++....
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp C-SCCEETTEECEEEECC------
T ss_pred h-CCcEECCEEEEEEecCChhHhc
Confidence 6 7999999999999998876554
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=9.6e-33 Score=239.79 Aligned_cols=176 Identities=21% Similarity=0.357 Sum_probs=151.8
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
...++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..|.++. +.+.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~--l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN--IKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC--CEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee--EEEe
Confidence 34679999999999999999999999999999999999889999999999999999999999999999997655 4444
Q ss_pred ccccCCCCC------cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 015468 151 WATYGAGER------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLR 224 (406)
Q Consensus 151 ~~~~~~~~~------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 224 (406)
++....... .......++|||+||+.++++++|+++|++ ||.|..+.+..+..+++++|+|||+|.+.++|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 433221110 012245579999999999999999999998 9999999999998899999999999999999999
Q ss_pred HHHHhcCcccCCcceEeCcCccccc
Q 015468 225 SMTEMNGVLCSTRPMRIGPAATKKA 249 (406)
Q Consensus 225 a~~~l~g~~~~g~~i~v~~~~~~~~ 249 (406)
|++.|++..+.|+.|+|.++..+..
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHHccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999999999987643
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.6e-32 Score=228.08 Aligned_cols=168 Identities=17% Similarity=0.333 Sum_probs=148.3
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCC--CccceEEEEEcCHHHHHHHHHHhCCCCCC-CCCccce
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTN--FSEGYGFIEFVSHAAAERVLQTFNGTQMP-STEQNFR 148 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~~~~~~-~~~~~v~ 148 (406)
.+++|||+|||+++|+++|+++|+.||.|.+|++++++.++ +++|||||+|.+.++|.+|++.|++..+. +..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998776 89999999999999999999999997764 4466666
Q ss_pred ecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 015468 149 LNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (406)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 228 (406)
+.++.... ......++|||+|||.++++++|+++|++ ||.|..+.+..+. +++++|+|||+|.+.++|.+|++.
T Consensus 82 ~~~~~~~~----~~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 82 MKPADSEK----NNAVEDRKLFIGMISKKCTENDIRVMFSS-FGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEECGGGC----CSCGGGSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Eccccccc----cccCCCCeEEEcCCCCcCCHHHHHHHHHh-CCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 66655332 22335669999999999999999999998 9999999999985 689999999999999999999999
Q ss_pred hcCcccC---CcceEeCcCc
Q 015468 229 MNGVLCS---TRPMRIGPAA 245 (406)
Q Consensus 229 l~g~~~~---g~~i~v~~~~ 245 (406)
||+..+. ++.|+|.|++
T Consensus 156 l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HTTSCCCTTCSSCCEEEECC
T ss_pred hcCCcccCCCCCCeEEEecC
Confidence 9998776 4999999874
No 12
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.7e-32 Score=238.18 Aligned_cols=175 Identities=22% Similarity=0.423 Sum_probs=150.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCc
Q 015468 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (406)
Q Consensus 166 ~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 245 (406)
.++|||+|||.++++++|+++|+. ||.|.+|.++++..+++++|+|||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAP-FGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHh-CCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 458999999999999999999998 9999999999998889999999999999999999999999999999999998877
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCC
Q 015468 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFAN 319 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~ 319 (406)
............. ......++|||+|||.++++++|+++|+.||.|++|.|.++ +++|||+|.+
T Consensus 107 ~~~~~~~~~~~~~----------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 107 NIGQAQPIIDQLA----------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp CCGGGHHHHHHHH----------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred Cccccchhhhhhh----------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 6543221100000 01234578999999999999999999999999999999876 6899999999
Q ss_pred HHHHHHHHHHhCCceeCCceeEEeeccCCCCC
Q 015468 320 RTCAEQALSVLNGTQLGGQSIRLSWGRSPSNK 351 (406)
Q Consensus 320 ~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 351 (406)
.++|.+|+..||+..|+|+.|+|+|++++...
T Consensus 177 ~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 177 AQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 99999999999999999999999999987544
No 13
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.6e-32 Score=227.33 Aligned_cols=159 Identities=30% Similarity=0.525 Sum_probs=147.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
++++|||+|||.++++++|+++|+. ||.|.++.++.+..+++++|+|||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRA-IGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 4569999999999999999999998 999999999999889999999999999999999999999999999999999998
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeC
Q 015468 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFA 318 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~ 318 (406)
.+... ....++|||+|||..+++++|+++|+.||.|.++.+.++ +++|||+|.
T Consensus 81 ~~~~~---------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~ 139 (168)
T 1b7f_A 81 RPGGE---------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 139 (168)
T ss_dssp CCCSS---------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCcc---------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEEC
Confidence 76542 234578999999999999999999999999999999875 489999999
Q ss_pred CHHHHHHHHHHhCCceeCC--ceeEEeec
Q 015468 319 NRTCAEQALSVLNGTQLGG--QSIRLSWG 345 (406)
Q Consensus 319 ~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 345 (406)
+.++|.+|+..||+..+.| +.|+|+||
T Consensus 140 ~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 140 KREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp SHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999999987 99999986
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=5.7e-32 Score=225.03 Aligned_cols=158 Identities=27% Similarity=0.547 Sum_probs=145.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCc
Q 015468 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (406)
Q Consensus 166 ~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 245 (406)
.++|||+|||.++++++|+++|+. ||.|.++.++.+..+++++|+|||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGS-IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 469999999999999999999998 9999999999998899999999999999999999999999999999999999987
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCC
Q 015468 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFAN 319 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~ 319 (406)
+.... ...++|||+|||..+++++|+++|+.||.|.++.+..+ +++|||+|.+
T Consensus 81 ~~~~~---------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 139 (167)
T 1fxl_A 81 PSSAS---------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 139 (167)
T ss_dssp CCCGG---------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCccc---------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCC
Confidence 65432 23478999999999999999999999999999998764 5899999999
Q ss_pred HHHHHHHHHHhCCceeCCce--eEEeec
Q 015468 320 RTCAEQALSVLNGTQLGGQS--IRLSWG 345 (406)
Q Consensus 320 ~~~a~~a~~~l~~~~~~g~~--l~v~~~ 345 (406)
.++|.+|+..|||..+.|+. |+|+||
T Consensus 140 ~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 140 RIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999999975 888886
No 15
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-32 Score=225.17 Aligned_cols=160 Identities=21% Similarity=0.483 Sum_probs=146.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcc
Q 015468 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (406)
Q Consensus 167 ~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 246 (406)
++|||+|||.++++++|+++|++ ||.|.++.++.+. +++++|+|||+|.+.++|.+|++.+++..+.|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQV-GGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGG-GSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHh-cCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 48999999999999999999998 9999999999985 578999999999999999999999999999999999999866
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCH
Q 015468 247 KKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANR 320 (406)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~ 320 (406)
... ......++|||+|||..+++++|+++|+.||.|.++.+..+ +|+|||+|.+.
T Consensus 79 ~~~-------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 139 (166)
T 3md3_A 79 SQQ-------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 139 (166)
T ss_dssp CCC-------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred CCC-------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCH
Confidence 542 12345678999999999999999999999999999999755 67999999999
Q ss_pred HHHHHHHHHhCCceeCCceeEEeeccC
Q 015468 321 TCAEQALSVLNGTQLGGQSIRLSWGRS 347 (406)
Q Consensus 321 ~~a~~a~~~l~~~~~~g~~l~v~~~~~ 347 (406)
++|.+|+..|||..++|+.|+|+||+.
T Consensus 140 ~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 140 DDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999999999873
No 16
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=7.6e-33 Score=230.41 Aligned_cols=165 Identities=23% Similarity=0.394 Sum_probs=144.1
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
++++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++. +..+.+ ..+.+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g--~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDG--KVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETT--EECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCC--eEccccc
Confidence 578999999999999999999999999999999999988999999999999999999999984 344443 3333443
Q ss_pred cccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 015468 152 ATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (406)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 231 (406)
+... ......++|||+|||.++++++|+++|++ ||.|..+.+..+..+++++|+|||+|.+.++|.+|++ +++
T Consensus 78 ~~~~-----~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 78 AIPR-----DEQDKTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp CCCH-----HHHHHCEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ccch-----hhccCCCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 3211 11223558999999999999999999998 9999999999998889999999999999999999997 899
Q ss_pred cccCCcceEeCcCccc
Q 015468 232 VLCSTRPMRIGPAATK 247 (406)
Q Consensus 232 ~~~~g~~i~v~~~~~~ 247 (406)
..+.|+.|.|.++.++
T Consensus 151 ~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECSSSSCEEEEECCCC
T ss_pred EEeCCeEEEEeecCCC
Confidence 9999999999999775
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=4.7e-31 Score=221.29 Aligned_cols=161 Identities=23% Similarity=0.492 Sum_probs=142.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHhcCcccC---Ccce
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTG--RSKGYGFVRFGDESEQLRSMTEMNGVLCS---TRPM 239 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~g~~~~---g~~i 239 (406)
..++|||+|||+++++++|+++|++ ||.|.++.++++..++ +++|+|||+|.+.++|.+|++.|++..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQ-YGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 3569999999999999999999998 9999999999998776 89999999999999999999999998765 5677
Q ss_pred EeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----CcEEE
Q 015468 240 RIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGF 314 (406)
Q Consensus 240 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-----~~~af 314 (406)
.+.++...... ....++|||+|||.++++++|+++|+.||.|.++.+.++ +|+||
T Consensus 81 ~~~~~~~~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~af 140 (175)
T 3nmr_A 81 QMKPADSEKNN--------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAF 140 (175)
T ss_dssp EEEECGGGCCS--------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEE
T ss_pred EEccccccccc--------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEE
Confidence 77776554321 224578999999999999999999999999999999876 78999
Q ss_pred EEeCCHHHHHHHHHHhCCceeC---CceeEEeecc
Q 015468 315 VQFANRTCAEQALSVLNGTQLG---GQSIRLSWGR 346 (406)
Q Consensus 315 V~f~~~~~a~~a~~~l~~~~~~---g~~l~v~~~~ 346 (406)
|+|.+.++|.+|+..|||..+. ++.|+|+||.
T Consensus 141 V~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 141 VTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999999999998876 4999999984
No 18
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=7.5e-32 Score=224.37 Aligned_cols=159 Identities=23% Similarity=0.441 Sum_probs=144.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
++++|||+|||.++++++|+++|+. ||.|.++.++++..+++++|||||+|.+.++|.+|++. +..+.|+.|.+.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGK-YGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTT-TCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 3569999999999999999999998 99999999999988999999999999999999999984 57889999999887
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeC
Q 015468 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFA 318 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~ 318 (406)
.++.... ..++|||+|||.++++++|+++|+.||.|.++.+..+ +|+|||+|.
T Consensus 79 ~~~~~~~---------------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 137 (167)
T 2cjk_A 79 IPRDEQD---------------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYD 137 (167)
T ss_dssp CCHHHHH---------------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEES
T ss_pred cchhhcc---------------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEEC
Confidence 6654322 2368999999999999999999999999999999765 579999999
Q ss_pred CHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 319 NRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 319 ~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
+.++|.+|++ +++..++|+.|+|+|++++
T Consensus 138 ~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 138 SADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999999998 8999999999999999875
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.3e-30 Score=227.84 Aligned_cols=181 Identities=23% Similarity=0.352 Sum_probs=149.2
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 162 DDGPDFTIFVGDLAA-DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
...++++|||+|||. ++++++|+++|+. ||.|.+|.++.+. +|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~-~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHH-HTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 345667999999999 9999999999998 9999999999874 78999999999999999999999999999999
Q ss_pred eCcCcccccccccccc-----ccccC---------CCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCC-ceEEEE
Q 015468 241 IGPAATKKAATGQQYQ-----KATYQ---------NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYG-ELVHVK 305 (406)
Q Consensus 241 v~~~~~~~~~~~~~~~-----~~~~~---------~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G-~v~~v~ 305 (406)
|.++............ ..... ............+++|||+|||..+++++|+++|+.|| .|.+|+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 9998765321111000 00000 00000112234578999999999999999999999999 999999
Q ss_pred ee-CCCcEEEEEeCCHHHHHHHHHHhCCceeC-CceeEEeeccCC
Q 015468 306 IP-AGKRCGFVQFANRTCAEQALSVLNGTQLG-GQSIRLSWGRSP 348 (406)
Q Consensus 306 i~-~~~~~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~~~ 348 (406)
|. +++++|||+|.+.++|.+|+..|+|..++ |+.|+|+|++++
T Consensus 184 i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 94 47999999999999999999999999999 999999999864
No 20
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.2e-30 Score=235.97 Aligned_cols=181 Identities=22% Similarity=0.399 Sum_probs=149.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQ----ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 237 (406)
+..++++|||+||+.++++++|+ ++|++ ||.|.+|++++ +++++|||||+|.+.++|.+|++.|++..+.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~-~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQ-FGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 34567799999999999999976 89998 99999998876 578999999999999999999999999999999
Q ss_pred ceEeCcCcccccccccccccc----------------------ccC---------C------------------------
Q 015468 238 PMRIGPAATKKAATGQQYQKA----------------------TYQ---------N------------------------ 262 (406)
Q Consensus 238 ~i~v~~~~~~~~~~~~~~~~~----------------------~~~---------~------------------------ 262 (406)
.|+|.++.............. ... .
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 999999866442110000000 000 0
Q ss_pred -----------C------------------------CCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEee
Q 015468 263 -----------T------------------------QGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP 307 (406)
Q Consensus 263 -----------~------------------------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~ 307 (406)
. ..........+++|||+||+.++++++|+++|+.||.|++|+|.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 0 00001233467889999999999999999999999999999999
Q ss_pred CCC-cEEEEEeCCHHHHHHHHHHhCCceeC-CceeEEeecc
Q 015468 308 AGK-RCGFVQFANRTCAEQALSVLNGTQLG-GQSIRLSWGR 346 (406)
Q Consensus 308 ~~~-~~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 346 (406)
.++ ++|||+|.+.++|.+|+..|||..|. |+.|+|+|++
T Consensus 241 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 876 99999999999999999999999999 9999999987
No 21
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=9.6e-31 Score=218.73 Aligned_cols=159 Identities=20% Similarity=0.407 Sum_probs=140.1
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhccc----C-------CeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCC
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHT----G-------EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 140 (406)
.+++|||+|||+++|+++|+++|+.| | .|.++++.+ ++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 57899999999999999999999999 6 677777654 5899999999999999999 7999998
Q ss_pred CCCCccceecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHH
Q 015468 141 PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220 (406)
Q Consensus 141 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~ 220 (406)
.++ .+.+.++... ......++|||+|||.++++++|+++|++ ||.|..+.+..+..+++++|+|||+|.+.+
T Consensus 76 ~g~--~i~v~~~~~~-----~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 76 QGQ--SLKIRRPHDY-----QPLPGAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp TTE--ECEEECCSSC-----CCCTTTTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred cCc--eeeecCCccc-----CCCCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 654 4555544322 22234679999999999999999999998 999999999999889999999999999999
Q ss_pred HHHHHHHHhcCcccCCcceEeCcCc
Q 015468 221 EQLRSMTEMNGVLCSTRPMRIGPAA 245 (406)
Q Consensus 221 ~a~~a~~~l~g~~~~g~~i~v~~~~ 245 (406)
+|.+|++.|++..+.|+.|.|.++.
T Consensus 148 ~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999873
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.6e-30 Score=222.17 Aligned_cols=175 Identities=16% Similarity=0.226 Sum_probs=140.7
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCc
Q 015468 165 PDFTIFVGDLA-ADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (406)
Q Consensus 165 ~~~~l~v~~l~-~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 243 (406)
++++|||+||+ +.+++++|+++|++ ||.|.+|+++++ .+|+|||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~-~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCL-YGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTT-TSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHh-cCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 45699999999 89999999999998 999999999876 379999999999999999999999999999999999
Q ss_pred Ccccccccccc---cc-c---cccCCC-CC--------CCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCce--EEEE
Q 015468 244 AATKKAATGQQ---YQ-K---ATYQNT-QG--------SQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL--VHVK 305 (406)
Q Consensus 244 ~~~~~~~~~~~---~~-~---~~~~~~-~~--------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v--~~v~ 305 (406)
+.......... .. . ..+... .. ......+++++|||+|||+++++++|+++|+.||.| .+++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 86543211000 00 0 000000 00 001123456889999999999999999999999999 8999
Q ss_pred eeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCc----eeEEeec
Q 015468 306 IPAG----KRCGFVQFANRTCAEQALSVLNGTQLGGQ----SIRLSWG 345 (406)
Q Consensus 306 i~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~----~l~v~~~ 345 (406)
+..+ +++|||+|++.++|.+||..|||..|.|+ .+.|+++
T Consensus 157 ~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8765 48999999999999999999999999887 5777664
No 23
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=2.6e-30 Score=221.29 Aligned_cols=168 Identities=18% Similarity=0.357 Sum_probs=142.0
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhccc----C-------CeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCC
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHT----G-------EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQ 139 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 139 (406)
..+++|||+|||+++|+++|+++|+.| | .|.++++. +++|||||+|.+.++|.+|+ .|++..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357899999999999999999999999 5 56666654 36899999999999999999 799999
Q ss_pred CCCCCccceecccccCCCC---------------CcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCC
Q 015468 140 MPSTEQNFRLNWATYGAGE---------------RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT 204 (406)
Q Consensus 140 ~~~~~~~v~~~~~~~~~~~---------------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~ 204 (406)
|.++ .+.+.++...... ........++|||+|||.++++++|+++|++ ||.|..+.+..+..
T Consensus 75 ~~g~--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 FQGQ--SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSA 151 (198)
T ss_dssp ETTE--EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEEEEECTT
T ss_pred EcCc--eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEEEeecCC
Confidence 8754 4555554332111 1112245689999999999999999999998 99999999999988
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcccc
Q 015468 205 TGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248 (406)
Q Consensus 205 ~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 248 (406)
+++++|+|||+|.+.++|.+|++.|++..+.|+.|+|.++.++.
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999998764
No 24
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=3.1e-30 Score=220.46 Aligned_cols=156 Identities=16% Similarity=0.189 Sum_probs=131.7
Q ss_pred CCceEEEeCCC-CCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 72 GIRSLWIGDLQ-PWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 72 ~~~~l~V~nLp-~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
.+++|||+||| +++|+++|+++|+.||.|.+|+++++ .+|||||+|.+.++|.+|++.|||..+.++.+.| .
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v--~ 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNV--C 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEE--E
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEE--E
Confidence 46899999999 89999999999999999999999875 4899999999999999999999999998755444 4
Q ss_pred ccccCCCCC----------------------c----------CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCc--cE
Q 015468 151 WATYGAGER----------------------R----------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV--KG 196 (406)
Q Consensus 151 ~~~~~~~~~----------------------~----------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i--~~ 196 (406)
++......+ + ....++++|||+|||+++++++|+++|++ ||.| .+
T Consensus 76 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~-~G~v~~~~ 154 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE-LGVKRPTS 154 (205)
T ss_dssp ECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHH-HTCCCCSE
T ss_pred EccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHh-cCCcceEE
Confidence 443211000 0 01234668999999999999999999998 9999 88
Q ss_pred EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc
Q 015468 197 AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237 (406)
Q Consensus 197 ~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 237 (406)
++++.+. +.++|+|||+|.+.++|.+|+..||+..+.++
T Consensus 155 v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 155 VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 8888774 55679999999999999999999999999877
No 25
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=3.3e-30 Score=220.60 Aligned_cols=177 Identities=23% Similarity=0.365 Sum_probs=146.8
Q ss_pred CceEEEcCCCC-CCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 166 DFTIFVGDLAA-DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 166 ~~~l~v~~l~~-~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
+++|||+|||. ++++++|+++|+. ||.|.+|.++.+. +|+|||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~-~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHT-TCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 46999999999 9999999999998 9999999998874 789999999999999999999999999999999998
Q ss_pred ccccccccccccc-----cccC---------CCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCC-ceEEEEeeC-
Q 015468 245 ATKKAATGQQYQK-----ATYQ---------NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYG-ELVHVKIPA- 308 (406)
Q Consensus 245 ~~~~~~~~~~~~~-----~~~~---------~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G-~v~~v~i~~- 308 (406)
............. .... ..........+++++|||+|||..+++++|+++|+.|| .|.+|.|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 7653221110000 0000 00001112234578999999999999999999999999 999999954
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhCCceeC-CceeEEeeccCC
Q 015468 309 GKRCGFVQFANRTCAEQALSVLNGTQLG-GQSIRLSWGRSP 348 (406)
Q Consensus 309 ~~~~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~~~ 348 (406)
++++|||+|.+.++|.+|+..|||..++ |+.|+|+|++++
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 7999999999999999999999999999 999999999864
No 26
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=6.7e-31 Score=220.33 Aligned_cols=164 Identities=20% Similarity=0.371 Sum_probs=142.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
.....++|||+|||.++++++|+++|+. ||.+..+ ++.+..+++++|||||+|.+.++|.+|+ .|++..+.|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISE-LFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHH-HHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHH-hCCcceE-EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 4456679999999999999999999998 8887763 3344457889999999999999999999 59999999999999
Q ss_pred CcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEee--CCCcEEEEEeCC
Q 015468 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP--AGKRCGFVQFAN 319 (406)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~--~~~~~afV~f~~ 319 (406)
.++..+... .....++|||+|||.++++++|+++|+.||.|..+ .. ..+++|||+|.+
T Consensus 86 ~~~~~~~~~-------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~ 145 (175)
T 1fje_B 86 EKPKGRDSK-------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKS 145 (175)
T ss_dssp ECCCCSSCS-------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSS
T ss_pred ecCCCcccc-------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECC
Confidence 998765432 12345889999999999999999999999999888 22 247999999999
Q ss_pred HHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 320 RTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 320 ~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
.++|.+|+..|||..|+|+.|+|+|++++
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 146 EADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999999875
No 27
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=8.8e-30 Score=217.95 Aligned_cols=177 Identities=19% Similarity=0.371 Sum_probs=143.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCC-----------CccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYS-----------SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g-----------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 233 (406)
..++|||+|||.++++++|+++|+. || .|.++.+ ++++|||||+|.+.++|.+|+ .|++..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~-~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHH-HHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHH-HHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 3569999999999999999999998 85 3444433 456899999999999999999 999999
Q ss_pred cCCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC----
Q 015468 234 CSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---- 309 (406)
Q Consensus 234 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~---- 309 (406)
+.|+.|+|.++............... ..............++|||+|||..+++++|+++|+.||.|.+|.+..+
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~ 153 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSV-YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 153 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSC-CCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTC
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcC-CCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCC
Confidence 99999999998765433221111000 0001112223356789999999999999999999999999999999865
Q ss_pred --CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 310 --KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 310 --~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
+++|||+|.+.++|.+|+..||+..|+|+.|+|++++++..
T Consensus 154 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 154 LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 68999999999999999999999999999999999998654
No 28
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=5.8e-30 Score=213.97 Aligned_cols=153 Identities=22% Similarity=0.474 Sum_probs=135.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhC----C-------CccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVY----S-------SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 233 (406)
+.++|||+|||.++++++|+++|++ | | .|.++.+. +++|+|||+|.+.++|.+|+ .+++..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~-~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHH-HhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 3569999999999999999999998 8 5 55555554 34899999999999999999 999999
Q ss_pred cCCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC----
Q 015468 234 CSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---- 309 (406)
Q Consensus 234 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~---- 309 (406)
+.|+.|.|.++...... ...++|||+|||..+++++|+++|+.||.|.++.+.++
T Consensus 75 ~~g~~i~v~~~~~~~~~---------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g 133 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPL---------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 133 (172)
T ss_dssp ETTEECEEECCSSCCCC---------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC
T ss_pred ecCceeeecCCcccCCC---------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 99999999986554321 23588999999999999999999999999999999776
Q ss_pred --CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 310 --KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 310 --~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
+|+|||+|.+.++|.+|+..||+..++|+.|+|+||.
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 134 LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp SEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 5899999999999999999999999999999999974
No 29
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.5e-29 Score=227.54 Aligned_cols=174 Identities=16% Similarity=0.252 Sum_probs=154.8
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
..++|||+|||+++|+++|+++|+.||.|.+++++.+..+|+++|||||+|.+.++|.+|++.|++..+.+ +.+.+.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP--RTLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEEE
Confidence 34789999999999999999999999999999999998899999999999999999999999999999865 5566666
Q ss_pred cccCCCCCcCCCCCCceEEEcCCCCCC-CHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 015468 152 ATYGAGERRQDDGPDFTIFVGDLAADV-TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230 (406)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 230 (406)
+..... .......++|||+|||.++ ++++|+++|+. ||.|..+.++.+. +|+++|+|||+|.+.++|.+|++.|+
T Consensus 172 a~~~~~--~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 172 TDAGQL--TPALLHSRCLCVDRLPPGFNDVDALCRALSA-VHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp CCGGGC--CTTTTSCSEEEEECCCTTCCCHHHHHHHTCS-SSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCC--CcccCCccEEEEecCCcccCCHHHHHHHhhC-CCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 553322 2334566799999999995 99999999998 9999999999985 79999999999999999999999999
Q ss_pred CcccCCcceEeCcCccccccc
Q 015468 231 GVLCSTRPMRIGPAATKKAAT 251 (406)
Q Consensus 231 g~~~~g~~i~v~~~~~~~~~~ 251 (406)
+..+.|+.|+|.++.++....
T Consensus 248 g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp TCEETTEECEEEECCSSSCHH
T ss_pred CCccCCeEEEEEEecCCCccc
Confidence 999999999999998876543
No 30
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=2.6e-29 Score=227.15 Aligned_cols=166 Identities=19% Similarity=0.370 Sum_probs=141.4
Q ss_pred CCCCCceEEEeCCCCCcCHHHHH----HHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIA----SIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 144 (406)
....+++|||+|||+++|+++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.|++..|.++.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45668999999999999999977 8999999999999886 6778999999999999999999999999997644
Q ss_pred ccceecccccCCCC------------------------------------------------------------------
Q 015468 145 QNFRLNWATYGAGE------------------------------------------------------------------ 158 (406)
Q Consensus 145 ~~v~~~~~~~~~~~------------------------------------------------------------------ 158 (406)
+++.++......
T Consensus 82 --l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 82 --MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred --EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 444444322110
Q ss_pred ----------------------------------------CcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEE
Q 015468 159 ----------------------------------------RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAK 198 (406)
Q Consensus 159 ----------------------------------------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~ 198 (406)
......+.++|||+||+.++++++|+++|++ ||.|.+|.
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~ 238 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEE
Confidence 0012235678999999999999999999998 99999999
Q ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC-CcceEeCcCc
Q 015468 199 VVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS-TRPMRIGPAA 245 (406)
Q Consensus 199 ~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-g~~i~v~~~~ 245 (406)
++.++ +|+|||+|.+.++|.+|++.||+..+. |+.|+|.|+.
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 98763 689999999999999999999999999 9999999974
No 31
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=4.4e-29 Score=218.21 Aligned_cols=165 Identities=16% Similarity=0.321 Sum_probs=140.1
Q ss_pred CCCCceEEEeCCCC-CcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 70 SDGIRSLWIGDLQP-WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 70 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
...+++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+.++. +.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~--l~ 103 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKP--IR 103 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSB--CE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeE--EE
Confidence 35678999999999 99999999999999999999999874 789999999999999999999999997654 44
Q ss_pred ecccccCCCC--C----------------------------cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCC-CccEE
Q 015468 149 LNWATYGAGE--R----------------------------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS-SVKGA 197 (406)
Q Consensus 149 ~~~~~~~~~~--~----------------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g-~i~~~ 197 (406)
+.++...... . .....+.++|||+|||.++++++|+++|++ || .|..+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~~i~~v 182 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGF 182 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHT-TSCCEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHH-cCCCeeEE
Confidence 4444322100 0 011234679999999999999999999998 99 99999
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC-CcceEeCcCccc
Q 015468 198 KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS-TRPMRIGPAATK 247 (406)
Q Consensus 198 ~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-g~~i~v~~~~~~ 247 (406)
.++.+ .+|+|||+|.+.++|.+|++.|++..+. |+.|+|.|+.++
T Consensus 183 ~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 183 KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 98654 3789999999999999999999999999 999999998763
No 32
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=1.3e-30 Score=218.49 Aligned_cols=167 Identities=18% Similarity=0.296 Sum_probs=141.5
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
......++|||+|||+++|+++|+++|+.||.+.. .++.+..+++++|||||+|.+.++|.+|++ |++..+.+ +.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g--~~l 83 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG--NEI 83 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETT--EEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCC--eEE
Confidence 34567899999999999999999999999998766 334444677899999999999999999995 99999975 556
Q ss_pred eecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015468 148 RLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (406)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 227 (406)
.+.++.... .......++|||+|||.++++++|+++|++ ||.|..+ ..+++++|+|||+|.+.++|.+|++
T Consensus 84 ~v~~~~~~~---~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 84 KLEKPKGRD---SKKVRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp EEECCCCSS---CSTTGGGGEEEEESCCSSCCHHHHHHHCTT-CSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred EEecCCCcc---ccccccCCEEEEeCCCCCCCHHHHHHHHHh-cCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHH
Confidence 666655332 223345679999999999999999999998 9987655 4578999999999999999999999
Q ss_pred HhcCcccCCcceEeCcCccc
Q 015468 228 EMNGVLCSTRPMRIGPAATK 247 (406)
Q Consensus 228 ~l~g~~~~g~~i~v~~~~~~ 247 (406)
.|++..+.|+.|+|.|+.++
T Consensus 155 ~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHTEEEETTEEEEEEECSSC
T ss_pred HhCCCEECCeEEEEEecCCC
Confidence 99999999999999998765
No 33
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2.3e-29 Score=228.73 Aligned_cols=171 Identities=16% Similarity=0.305 Sum_probs=142.8
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccC-CeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTG-EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
..++|||+|||+++++++|+++|+.|| .|.+|+++.+.. |.++|||||+|.+.++|.+|++.|++..+.+ ..+.+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEG--YTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEE
Confidence 468999999999999999999999999 999999998864 7889999999999999999999999999965 556666
Q ss_pred ccccCCCCCc--CCCCCCceEEEcCCCCC-CCHHHHHHHHHhhCCCccEEEEEecCC-CCCcceEEEEEeCCHHHHHHHH
Q 015468 151 WATYGAGERR--QDDGPDFTIFVGDLAAD-VTDYVLQETFRAVYSSVKGAKVVTDRT-TGRSKGYGFVRFGDESEQLRSM 226 (406)
Q Consensus 151 ~~~~~~~~~~--~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~~g~i~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~ 226 (406)
++........ ......++|||+|||.+ +++++|+++|++ ||.|..|.++.+.. +++++|+|||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEG-FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGG-GSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhc-cCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 6554332222 24456779999999999 999999999998 99999999999865 5999999999999999999999
Q ss_pred HHhcCcccCCcceEeCcCccc
Q 015468 227 TEMNGVLCSTRPMRIGPAATK 247 (406)
Q Consensus 227 ~~l~g~~~~g~~i~v~~~~~~ 247 (406)
.||+..+.|+.|.|.|+.++
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCC
T ss_pred -HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999875
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1.2e-28 Score=219.68 Aligned_cols=161 Identities=26% Similarity=0.439 Sum_probs=142.0
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
......++|||+|||+++|+++|+++|+.||.|.+|++.+ ++|||||+|.+.++|.+|+..|++..+.+ ..+
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g--~~l 88 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKS--RPL 88 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETT--EEC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECC--cee
Confidence 3356678999999999999999999999999999999965 47999999999999999999999999965 556
Q ss_pred eecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015468 148 RLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (406)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 227 (406)
.+.++.. ..+|||+|||..+++++|+++|+. ||.|..|.++.+ .+|+++|+|||+|.+.++|.+|++
T Consensus 89 ~v~~a~~-----------~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~ 155 (261)
T 3sde_A 89 RIRFATH-----------GAALTVKNLSPVVSNELLEQAFSQ-FGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALE 155 (261)
T ss_dssp EEEECCC-----------SSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHH
T ss_pred Eeeeccc-----------CCcccccCCCCCCCHHHHHHHHHh-cCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHH
Confidence 6666542 458999999999999999999998 999999999999 589999999999999999999999
Q ss_pred Hhc-CcccC---CcceEeCcCccccc
Q 015468 228 EMN-GVLCS---TRPMRIGPAATKKA 249 (406)
Q Consensus 228 ~l~-g~~~~---g~~i~v~~~~~~~~ 249 (406)
.|+ +..+. ++.|.|.++.....
T Consensus 156 ~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 156 RCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHHHSCEESSSSCCBCEEEECCCEES
T ss_pred HhcCCeEEecCCCceEEEeeccccCc
Confidence 995 44444 99999999877543
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=8.3e-29 Score=211.84 Aligned_cols=162 Identities=16% Similarity=0.307 Sum_probs=138.2
Q ss_pred CceEEEeCCCC-CcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 73 IRSLWIGDLQP-WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 73 ~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
+++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+.++.+ .+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l--~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPI--RITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCC--EEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEE--EEEE
Confidence 58999999999 99999999999999999999998874 7899999999999999999999999976554 4444
Q ss_pred cccCCCC--C----------------------------cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCC-CccEEEEE
Q 015468 152 ATYGAGE--R----------------------------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS-SVKGAKVV 200 (406)
Q Consensus 152 ~~~~~~~--~----------------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g-~i~~~~~~ 200 (406)
+...... . .....+.++|||+|||.++++++|+++|++ || .|..+.++
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~~v~~v~i~ 154 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFF 154 (198)
T ss_dssp CCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHH-TTSCCCEEEES
T ss_pred ecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHH-cCCCceEEEEE
Confidence 4322100 0 011234779999999999999999999998 99 99999987
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC-CcceEeCcCccc
Q 015468 201 TDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS-TRPMRIGPAATK 247 (406)
Q Consensus 201 ~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~-g~~i~v~~~~~~ 247 (406)
.+ .+|+|||+|.+.++|.+|++.|++..+. |+.|+|.|+.++
T Consensus 155 ~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 155 QK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp ST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred eC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 65 2789999999999999999999999999 999999998653
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=6.1e-28 Score=215.18 Aligned_cols=155 Identities=24% Similarity=0.426 Sum_probs=139.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
....++|||+|||.++|+++|+++|++ ||.|..|.+.++ +|||||+|.+.++|.+|+..+++..+.|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFER-YGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGG-GCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 345679999999999999999999998 999999999654 7899999999999999999999999999999999
Q ss_pred cCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----CcEEEEEe
Q 015468 243 PAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGFVQF 317 (406)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-----~~~afV~f 317 (406)
++.+ .++|||+|||..+++++|+++|+.||.|.+|.|+.+ +|+|||+|
T Consensus 92 ~a~~---------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f 144 (261)
T 3sde_A 92 FATH---------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEF 144 (261)
T ss_dssp ECCC---------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEE
T ss_pred eccc---------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEe
Confidence 9754 367999999999999999999999999999999765 78999999
Q ss_pred CCHHHHHHHHHHhCC-ceeC---CceeEEeeccCCCCC
Q 015468 318 ANRTCAEQALSVLNG-TQLG---GQSIRLSWGRSPSNK 351 (406)
Q Consensus 318 ~~~~~a~~a~~~l~~-~~~~---g~~l~v~~~~~~~~~ 351 (406)
.+.++|.+|+..||+ ..+. ++.|.|+++......
T Consensus 145 ~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 145 AAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp SSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEESS
T ss_pred CCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCcc
Confidence 999999999999954 4444 899999999876443
No 37
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=7.7e-23 Score=166.21 Aligned_cols=138 Identities=20% Similarity=0.257 Sum_probs=116.5
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHh-cCcccCCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCc
Q 015468 206 GRSKGYGFVRFGDESEQLRSMTEM-NGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDP 284 (406)
Q Consensus 206 ~~~~g~~fv~f~~~~~a~~a~~~l-~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~ 284 (406)
...+|+++|+|.+.++|++|++.+ ++..++| .+.+.++..+....... ...............++|||+|||+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~V~nl~~ 83 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS-----HHHHHHMHRDSCPLDCKVYVGNLGN 83 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS-----SSCCCCSCSSSSTTSCEEEEESCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc-----ccccccccccCCCCCCEEEEeCCCC
Confidence 467899999999999999999999 9999999 99999886643322110 0111112234455678999999999
Q ss_pred cCcHHHHHhhhccCCceEEEEeeCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 285 SVTDDILKTVFGQYGELVHVKIPAG-KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 285 ~~~~~~l~~~f~~~G~v~~v~i~~~-~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
++++++|+++|+.||.|.+|+|+++ +|+|||+|.+.++|.+|+..||+..|+|+.|+|+|++++.
T Consensus 84 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 84 NGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999999999987 9999999999999999999999999999999999998764
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=3.4e-22 Score=164.06 Aligned_cols=146 Identities=20% Similarity=0.260 Sum_probs=110.4
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCc
Q 015468 196 GAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNT 275 (406)
Q Consensus 196 ~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (406)
.+.|+.+. .+++|+|||+|.+.++|++|++.+++.......+.+........... ..............+
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 71 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE--------GSHHHHHHMDVEGMT 71 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC--------CCCCSSCCCCCCBCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc--------cccccccccCCCCCC
Confidence 35566663 36899999999999999999988876544333333332221111100 001111223345568
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
+|||+|||.++++++|+++|+.||.|.+|.|+++ +|+|||+|.+.++|.+|+..||+..|+|+.|+|+++++..
T Consensus 72 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 72 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999999999999999999999999999999865 6899999999999999999999999999999999999765
Q ss_pred CC
Q 015468 350 NK 351 (406)
Q Consensus 350 ~~ 351 (406)
..
T Consensus 152 ~~ 153 (158)
T 2kn4_A 152 PP 153 (158)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=1.1e-22 Score=166.94 Aligned_cols=146 Identities=23% Similarity=0.294 Sum_probs=115.1
Q ss_pred EEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc-----ceecccc-cCCCCCcCCCCCCceEEEcCCC
Q 015468 102 SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN-----FRLNWAT-YGAGERRQDDGPDFTIFVGDLA 175 (406)
Q Consensus 102 ~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~-----v~~~~~~-~~~~~~~~~~~~~~~l~v~~l~ 175 (406)
.++|+.+.. +++|||||+|.+.++|++|++.+++......... ....... .............++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 567777654 5899999999999999999988775432211111 1111111 1111222334556799999999
Q ss_pred CCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcccccc
Q 015468 176 ADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 250 (406)
+++++++|+++|+. ||.|..+.++.+..+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.++.+....
T Consensus 80 ~~~~~~~l~~~F~~-~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEK-YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHH-HSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHh-cCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999998 999999999999889999999999999999999999999999999999999999876543
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=3.6e-21 Score=148.57 Aligned_cols=107 Identities=21% Similarity=0.355 Sum_probs=69.7
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
.+.+|||+|||+++|+++|+++|+.||.|.+|+|++++ +.++|||||+|.+.++|.+|++.|++..|.++ .+.+.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~--~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCE--EEEEEE
Confidence 35679999999999999999999999999999999985 44799999999999999999999999999764 555555
Q ss_pred cccCCCC---CcCCCCCCceEEEcCCCCCCCHHH
Q 015468 152 ATYGAGE---RRQDDGPDFTIFVGDLAADVTDYV 182 (406)
Q Consensus 152 ~~~~~~~---~~~~~~~~~~l~v~~l~~~~~~~~ 182 (406)
+...... .........+|||+||+.++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 5433221 112233445799999999998764
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=4.7e-21 Score=147.94 Aligned_cols=109 Identities=28% Similarity=0.527 Sum_probs=75.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCc
Q 015468 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (406)
Q Consensus 166 ~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 245 (406)
..+|||+|||+++++++|+++|++ ||.|.+|+|+.+. +.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhc-cCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 458999999999999999999998 9999999999985 5589999999999999999999999999999999999987
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHH
Q 015468 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDI 290 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~ 290 (406)
.+...... ........++|||+|||.++|++.
T Consensus 82 ~~~~~~~~-------------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAE-------------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC-----------------------------------------
T ss_pred Cccccccc-------------cccccCCCCceEeCCCCCCccccc
Confidence 75543221 011223345799999999999864
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=2e-20 Score=151.92 Aligned_cols=128 Identities=22% Similarity=0.348 Sum_probs=109.3
Q ss_pred CCccceEEEEEcCHHHHHHHHHHh-CCCCCCCCCccceecccccC-----------CCCCcCCCCCCceEEEcCCCCCCC
Q 015468 112 NFSEGYGFIEFVSHAAAERVLQTF-NGTQMPSTEQNFRLNWATYG-----------AGERRQDDGPDFTIFVGDLAADVT 179 (406)
Q Consensus 112 g~~~g~afV~f~~~~~A~~A~~~l-~~~~~~~~~~~v~~~~~~~~-----------~~~~~~~~~~~~~l~v~~l~~~~~ 179 (406)
.+.+|+++|+|.+.++|++|++.+ ++..+.+ .+.+.++... ...........++|||+|||++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 347899999999999999999999 9999987 5555555431 112233445678999999999999
Q ss_pred HHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcccc
Q 015468 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248 (406)
Q Consensus 180 ~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 248 (406)
+++|+++|++ ||.|.+|.++.+ ++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.++.
T Consensus 87 ~~~l~~~F~~-~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTELERAFGY-YGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHHHHHHHHH-HSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHHh-hCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999998 999999999876 58999999999999999999999999999999999987753
No 43
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=7.9e-20 Score=146.43 Aligned_cols=84 Identities=25% Similarity=0.493 Sum_probs=75.6
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.|++..|.+ ..+++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v 116 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN--KRLKV 116 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS--CEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC--eEEEE
Confidence 4567899999999999999999999999999999999999899999999999999999999999999999975 45666
Q ss_pred cccccC
Q 015468 150 NWATYG 155 (406)
Q Consensus 150 ~~~~~~ 155 (406)
.++...
T Consensus 117 ~~a~~~ 122 (139)
T 1u6f_A 117 ALAASG 122 (139)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 665543
No 44
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=1.4e-20 Score=178.27 Aligned_cols=80 Identities=18% Similarity=0.365 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeec
Q 015468 272 PNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWG 345 (406)
Q Consensus 272 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 345 (406)
...++|||+||+..+|+++|+++|+.||.|+.|.|+.+ +|||||+|.+.++|.+||..||+..|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999764 789999999999999999999999999999999999
Q ss_pred cCCCCC
Q 015468 346 RSPSNK 351 (406)
Q Consensus 346 ~~~~~~ 351 (406)
++....
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 976543
No 45
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.7e-20 Score=136.96 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhC--CceeCCceeEEeeccCC
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLN--GTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~~ 348 (406)
....++|||+|||+++++++|+++|+.||.|.+|.|+++||||||+|++.++|.+|++.|+ +..|.|+.|+|+|++.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 4566899999999999999999999999999999999999999999999999999999886 47899999999999987
Q ss_pred CCCC
Q 015468 349 SNKQ 352 (406)
Q Consensus 349 ~~~~ 352 (406)
....
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6544
No 46
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=133.42 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCc-cCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCc--eeCCceeEEeeccCC
Q 015468 272 PNNTTIFVGGLDP-SVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGT--QLGGQSIRLSWGRSP 348 (406)
Q Consensus 272 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~--~~~g~~l~v~~~~~~ 348 (406)
.++++|||+|||+ ++++++|+++|+.||.|.+|.|++++++|||+|++.++|.+|+..|++. .|.|+.|+|.|++..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 4678999999999 9999999999999999999999999999999999999999999998864 599999999999965
Q ss_pred CC
Q 015468 349 SN 350 (406)
Q Consensus 349 ~~ 350 (406)
..
T Consensus 93 ~~ 94 (102)
T 1x4d_A 93 KR 94 (102)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 47
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.7e-19 Score=131.13 Aligned_cols=84 Identities=15% Similarity=0.240 Sum_probs=76.3
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHh--CCceeCCceeEEeecc
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVL--NGTQLGGQSIRLSWGR 346 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l--~~~~~~g~~l~v~~~~ 346 (406)
....++++|||+|||+++++++|+++|+.||.|.+|.|+++|++|||+|++.++|.+|+..| ++..+.|+.|+|+|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 33456789999999999999999999999999999999999999999999999999999977 5678999999999999
Q ss_pred CCCCCC
Q 015468 347 SPSNKQ 352 (406)
Q Consensus 347 ~~~~~~ 352 (406)
.+....
T Consensus 90 ~~~~~~ 95 (101)
T 2cq1_A 90 HKELKT 95 (101)
T ss_dssp CSSCCC
T ss_pred cccCcC
Confidence 876554
No 48
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=132.77 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=74.5
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCce--eCCceeEEeeccC
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQ--LGGQSIRLSWGRS 347 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~ 347 (406)
..+++++|||+|||+++++++|+++|++||.|.+|.++++||+|||+|++.++|.+|+..|++.. +.|+.|+|+|++.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 34567899999999999999999999999999999999999999999999999999999998875 8899999999987
Q ss_pred CC
Q 015468 348 PS 349 (406)
Q Consensus 348 ~~ 349 (406)
+.
T Consensus 97 k~ 98 (100)
T 3r27_A 97 QK 98 (100)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 49
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=134.80 Aligned_cols=81 Identities=25% Similarity=0.485 Sum_probs=77.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++|||+|||.++|+++|+++|++ ||.|.++.+++++.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3568999999999999999999998 999999999999989999999999999999999999999999999999999998
Q ss_pred cc
Q 015468 245 AT 246 (406)
Q Consensus 245 ~~ 246 (406)
.|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 65
No 50
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=135.32 Aligned_cols=81 Identities=32% Similarity=0.534 Sum_probs=74.2
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
...++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|||..|.+ +.++|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g--r~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS--KTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC--EEEEEE
Confidence 445789999999999999999999999999999999999999999999999999999999999999999965 566666
Q ss_pred ccc
Q 015468 151 WAT 153 (406)
Q Consensus 151 ~~~ 153 (406)
|+.
T Consensus 95 ~Ak 97 (99)
T 4fxv_A 95 YAR 97 (99)
T ss_dssp ECC
T ss_pred Eee
Confidence 664
No 51
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=6.9e-19 Score=133.07 Aligned_cols=81 Identities=32% Similarity=0.598 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
....++|||+|||.++++++|+++|+.||.|.+|.|+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|++++..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 4456889999999999999999999999999999998 55999999999999999999999999999999999998765
Q ss_pred CCC
Q 015468 351 KQS 353 (406)
Q Consensus 351 ~~~ 353 (406)
...
T Consensus 86 ~~~ 88 (103)
T 2dgu_A 86 KRK 88 (103)
T ss_dssp CCC
T ss_pred cch
Confidence 543
No 52
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=2.6e-19 Score=146.33 Aligned_cols=81 Identities=25% Similarity=0.432 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
....++|||+|||..+++++|+++|+.||.|++|.|+.+ +++|||+|.+.++|.+||..||+..|+|+.|+|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999765 57999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 015468 345 GRSPSNK 351 (406)
Q Consensus 345 ~~~~~~~ 351 (406)
+++....
T Consensus 116 a~~~~~~ 122 (156)
T 1h2v_Z 116 DAGFKEG 122 (156)
T ss_dssp ESCCCTT
T ss_pred CCCCCCc
Confidence 9976543
No 53
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.5e-19 Score=131.51 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=74.7
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCc--eeCCceeEEeeccC
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGT--QLGGQSIRLSWGRS 347 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~--~~~g~~l~v~~~~~ 347 (406)
...++++|||+|||+++++++|+++|++||.|.+|.|+++|++|||+|++.++|.+|++.|++. .|.|+.|+|+|++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 4456789999999999999999999999999999999999999999999999999999988654 59999999999997
Q ss_pred CCCC
Q 015468 348 PSNK 351 (406)
Q Consensus 348 ~~~~ 351 (406)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wex_A 91 KRIT 94 (104)
T ss_dssp SSCC
T ss_pred cccc
Confidence 6544
No 54
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=4.7e-19 Score=125.48 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 272 PNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 272 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
..+..|||+||++.+|+++|+++|.+||+|.++++..++|||||+|.+.++|.+|++.||+..+.|+.|+|++|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 346789999999999999999999999999999999999999999999999999999999999999999999985
No 55
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=7.7e-20 Score=158.42 Aligned_cols=76 Identities=17% Similarity=0.289 Sum_probs=69.8
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCC--ceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYG--ELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G--~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
..++|||+||++++++++|+++|+.|| .|++|+|+++ ++||||+|++.++|.+||..||+..|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 9999999865 58999999999999999999999999999999999
Q ss_pred ccCC
Q 015468 345 GRSP 348 (406)
Q Consensus 345 ~~~~ 348 (406)
+++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8743
No 56
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.3e-18 Score=130.43 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCC-----ceeEEeec
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGG-----QSIRLSWG 345 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g-----~~l~v~~~ 345 (406)
....++|||+|||+++++++|+++|+.||.|.+|.|+.+ ++|||+|++.++|.+||+.||+..|.| +.|+|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 345689999999999999999999999999999999988 999999999999999999999999999 99999999
Q ss_pred cCCCCC
Q 015468 346 RSPSNK 351 (406)
Q Consensus 346 ~~~~~~ 351 (406)
+++...
T Consensus 91 ~~~~~~ 96 (108)
T 1x4c_A 91 GPRSPS 96 (108)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 986543
No 57
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.9e-19 Score=133.71 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhC--CceeCCceeEEeeccCC
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLN--GTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~~ 348 (406)
..++++|||+|||+++++++|+++|+.||.|++|.|+++|++|||+|++.++|.+|++.|+ +..|.|+.|+|+|++.+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 3456899999999999999999999999999999999999999999999999999999887 46899999999999987
Q ss_pred CCCC
Q 015468 349 SNKQ 352 (406)
Q Consensus 349 ~~~~ 352 (406)
..+.
T Consensus 108 ~~~~ 111 (119)
T 2ad9_A 108 ELKT 111 (119)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6554
No 58
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=139.23 Aligned_cols=83 Identities=24% Similarity=0.426 Sum_probs=75.7
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEE
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRL 342 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 342 (406)
......++|||+|||.++++++|+++|+.||.|++|+|+++ +++|||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556789999999999999999999999999999999754 679999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 015468 343 SWGRSPSNK 351 (406)
Q Consensus 343 ~~~~~~~~~ 351 (406)
++++++..+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999987544
No 59
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=3.9e-19 Score=141.00 Aligned_cols=120 Identities=23% Similarity=0.310 Sum_probs=76.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHH
Q 015468 211 YGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDI 290 (406)
Q Consensus 211 ~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~ 290 (406)
+.|++|.+...+..|+..+++....++.. ..+..+ +......++|||+|||.++++++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~---------------------~~~~~~~~~l~V~nLp~~~te~~ 63 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP---------------------PPDVEGMTSLKVDNLTYRTSPDT 63 (135)
T ss_dssp ------------------------------CCSCCS---------------------CSSGGGCCCEEEECCCSSCHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC---------------------CCCCCCCCEEEEeCCCCCCCHHH
Confidence 56788888888999998888766555431 122211 12223457899999999999999
Q ss_pred HHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCCCC
Q 015468 291 LKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQ 352 (406)
Q Consensus 291 l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 352 (406)
|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|+++.....
T Consensus 64 L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 64 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp HHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred HHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 9999999999999999764 6799999999999999999999999999999999999865443
No 60
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=7.7e-19 Score=133.86 Aligned_cols=80 Identities=13% Similarity=0.182 Sum_probs=72.5
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
.+.++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..|.++. +++.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~--i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI--IHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE--CEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE--EEEE
Confidence 34688999999999999999999999999999999999999999999999999999999999999999997654 4444
Q ss_pred cc
Q 015468 151 WA 152 (406)
Q Consensus 151 ~~ 152 (406)
++
T Consensus 82 ~a 83 (110)
T 3s8s_A 82 LD 83 (110)
T ss_dssp EC
T ss_pred EC
Confidence 44
No 61
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=128.17 Aligned_cols=81 Identities=22% Similarity=0.491 Sum_probs=75.7
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeC--CceeEEeeccC
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLG--GQSIRLSWGRS 347 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~~~~ 347 (406)
.....++|||+|||.++++++|+++|+.||.|.+|.+.+++++|||+|.+.++|.+|++.||+..|. |+.|+|+|+++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 3455688999999999999999999999999999999999999999999999999999999999999 99999999998
Q ss_pred CCC
Q 015468 348 PSN 350 (406)
Q Consensus 348 ~~~ 350 (406)
+..
T Consensus 93 ~~~ 95 (97)
T 1why_A 93 GPS 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 62
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=3.2e-19 Score=141.50 Aligned_cols=126 Identities=20% Similarity=0.291 Sum_probs=83.0
Q ss_pred ceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCcc
Q 015468 116 GYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVK 195 (406)
Q Consensus 116 g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~ 195 (406)
-++|++|++...+..|+..+++....+... ..+. .......+.++|||+|||.++++++|+++|++ ||.|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~---~~~~-----~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS---MSYG-----RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEK-YGRVG 75 (135)
T ss_dssp ---------------------------------CCSC-----CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGG-GSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC---CCcC-----CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEE
Confidence 467888888888889988888776544321 1111 12234445679999999999999999999998 99999
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcccccc
Q 015468 196 GAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250 (406)
Q Consensus 196 ~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 250 (406)
.|.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.++......
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999888999999999999999999999999999999999999999876543
No 63
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.4e-18 Score=127.79 Aligned_cols=85 Identities=27% Similarity=0.441 Sum_probs=77.7
Q ss_pred CCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 268 GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 268 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
.......++|||+|||.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344566799999999999999999999999999999999876 7899999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 015468 344 WGRSPSNKQ 352 (406)
Q Consensus 344 ~~~~~~~~~ 352 (406)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 999876543
No 64
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-18 Score=128.46 Aligned_cols=81 Identities=28% Similarity=0.524 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
.....++|||+|||..+++++|+++|+.||.|.+|.|.+++++|||+|.+.++|.+|+..|++..|+|+.|+|+|++++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C
Q 015468 350 N 350 (406)
Q Consensus 350 ~ 350 (406)
.
T Consensus 91 ~ 91 (99)
T 2cpj_A 91 S 91 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 65
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=132.66 Aligned_cols=86 Identities=13% Similarity=0.153 Sum_probs=80.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCc
Q 015468 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 243 (406)
.+.++|||+||++++++++|+++|++ ||.|.+|.|+.|..+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRK-YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45669999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccc
Q 015468 244 AATKKAA 250 (406)
Q Consensus 244 ~~~~~~~ 250 (406)
+......
T Consensus 83 a~~~~~~ 89 (110)
T 3s8s_A 83 DIKGQQR 89 (110)
T ss_dssp CSTTHHH
T ss_pred CCCCcHH
Confidence 8765443
No 66
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=125.75 Aligned_cols=79 Identities=28% Similarity=0.528 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
....++|||+|||.++++++|+++|+.||.|.+|.|. +++|||+|.+.++|.+|+..||+..++|+.|+|++++++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 4556899999999999999999999999999999998 78999999999999999999999999999999999998754
Q ss_pred C
Q 015468 351 K 351 (406)
Q Consensus 351 ~ 351 (406)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 67
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.6e-18 Score=129.48 Aligned_cols=82 Identities=26% Similarity=0.467 Sum_probs=75.0
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC---CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeec
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWG 345 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~---~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 345 (406)
......++|||+|||.++++++|+++|+.||.|.+|.|..+ +++|||+|++.++|.+|++.||+..|+|+.|+|+|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34456789999999999999999999999999999999765 679999999999999999999999999999999999
Q ss_pred cCCCC
Q 015468 346 RSPSN 350 (406)
Q Consensus 346 ~~~~~ 350 (406)
++...
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97643
No 68
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=130.77 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCcc-CcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhC--CceeCCceeEEeeccC
Q 015468 271 DPNNTTIFVGGLDPS-VTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLN--GTQLGGQSIRLSWGRS 347 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~ 347 (406)
..++++|||+|||++ +++++|+++|+.||.|.+|.|++++++|||+|++.++|.+|+..|+ +..|.|+.|+|+|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 446789999999998 9999999999999999999999999999999999999999999886 4569999999999987
Q ss_pred CCCC
Q 015468 348 PSNK 351 (406)
Q Consensus 348 ~~~~ 351 (406)
+...
T Consensus 102 ~~~~ 105 (112)
T 1x4f_A 102 YKKL 105 (112)
T ss_dssp CSSS
T ss_pred cccc
Confidence 6543
No 69
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.8e-18 Score=130.59 Aligned_cols=83 Identities=28% Similarity=0.440 Sum_probs=74.8
Q ss_pred CCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeE
Q 015468 268 GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIR 341 (406)
Q Consensus 268 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 341 (406)
.......++|||+|||.++++++|+++|+.||.|.+|+|+++ +++|||+|.+.++|.+|+..|++ .|.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 345566799999999999999999999999999999999875 57999999999999999999998 89999999
Q ss_pred EeeccCCCCC
Q 015468 342 LSWGRSPSNK 351 (406)
Q Consensus 342 v~~~~~~~~~ 351 (406)
|++++.....
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999876443
No 70
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.4e-18 Score=136.57 Aligned_cols=83 Identities=24% Similarity=0.445 Sum_probs=75.9
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEE
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRL 342 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 342 (406)
......++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|+..||+..|+|+.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34455789999999999999999999999999999999866 789999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 015468 343 SWGRSPSNK 351 (406)
Q Consensus 343 ~~~~~~~~~ 351 (406)
+|++++...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999876554
No 71
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.4e-18 Score=128.19 Aligned_cols=84 Identities=21% Similarity=0.418 Sum_probs=76.5
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
......++|||+|||..+++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34456789999999999999999999999999999999854 78999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 015468 345 GRSPSNKQ 352 (406)
Q Consensus 345 ~~~~~~~~ 352 (406)
++++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 99876543
No 72
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.4e-18 Score=126.21 Aligned_cols=79 Identities=28% Similarity=0.626 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeec
Q 015468 272 PNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWG 345 (406)
Q Consensus 272 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 345 (406)
..+++|||+|||.++++++|+++|+.||.|.+|.|.++ +++|||+|.+.++|.+|+..||+..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45689999999999999999999999999999999875 579999999999999999999999999999999999
Q ss_pred cCCCC
Q 015468 346 RSPSN 350 (406)
Q Consensus 346 ~~~~~ 350 (406)
+++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 98654
No 73
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=4.6e-19 Score=130.42 Aligned_cols=83 Identities=13% Similarity=0.279 Sum_probs=76.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCC-CccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-cCcccCCcceEeCcC
Q 015468 167 FTIFVGDLAADVTDYVLQETFRAVYS-SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM-NGVLCSTRPMRIGPA 244 (406)
Q Consensus 167 ~~l~v~~l~~~~~~~~l~~~f~~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-~g~~~~g~~i~v~~~ 244 (406)
++|||+|||.++|+++|+++|++ || .|.+|+|++++.+++++|||||+|.+.++|.+|++.+ ++..+.|+.|+|+++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 58999999999999999999998 99 8999999999999999999999999999999999887 456799999999999
Q ss_pred cccccc
Q 015468 245 ATKKAA 250 (406)
Q Consensus 245 ~~~~~~ 250 (406)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 74
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=131.56 Aligned_cols=80 Identities=29% Similarity=0.560 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 272 PNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 272 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
...++|||+|||.++++++|+++|+.||.|++|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34588999999999999999999999999999999876 4899999999999999999999999999999999999
Q ss_pred CCCCC
Q 015468 347 SPSNK 351 (406)
Q Consensus 347 ~~~~~ 351 (406)
++...
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76543
No 75
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.7e-18 Score=125.17 Aligned_cols=79 Identities=23% Similarity=0.442 Sum_probs=73.3
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
.....++|||+|||.++++++|+++|+.||.|.+|.|.++ +|||+|.+.++|.+|+..||+..|.|+.|+|++++++.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456689999999999999999999999999999999855 99999999999999999999999999999999999865
Q ss_pred C
Q 015468 350 N 350 (406)
Q Consensus 350 ~ 350 (406)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 4
No 76
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.8e-18 Score=127.05 Aligned_cols=81 Identities=21% Similarity=0.367 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
....++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|+..||+..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999875 48999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 015468 345 GRSPSNK 351 (406)
Q Consensus 345 ~~~~~~~ 351 (406)
++++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9987554
No 77
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.5e-18 Score=127.38 Aligned_cols=84 Identities=29% Similarity=0.559 Sum_probs=76.5
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
......++|||+|||..+++++|+++|+.||.|.+|.|.++ +++|||+|.+.++|.+|+..|++..|.|+.|+|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34456789999999999999999999999999999999874 68999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 015468 345 GRSPSNKQ 352 (406)
Q Consensus 345 ~~~~~~~~ 352 (406)
++++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 99875443
No 78
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.7e-18 Score=130.47 Aligned_cols=81 Identities=26% Similarity=0.695 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
....++|||+|||..+++++|+++|+.||.|.+|.|.+++++|||+|.+.++|.+|+..|++..|+|+.|+|+|+++...
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred C
Q 015468 351 K 351 (406)
Q Consensus 351 ~ 351 (406)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 79
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7e-18 Score=128.55 Aligned_cols=84 Identities=26% Similarity=0.517 Sum_probs=76.8
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-------CcEEEEEeCCHHHHHHHHHHh-CCceeCCcee
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-------KRCGFVQFANRTCAEQALSVL-NGTQLGGQSI 340 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-------~~~afV~f~~~~~a~~a~~~l-~~~~~~g~~l 340 (406)
......++|||+|||..+++++|+++|+.||.|.+|.|+++ +++|||+|.+.++|.+|+..| |+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34556789999999999999999999999999999999876 789999999999999999999 9999999999
Q ss_pred EEeeccCCCCCC
Q 015468 341 RLSWGRSPSNKQ 352 (406)
Q Consensus 341 ~v~~~~~~~~~~ 352 (406)
+|+|++++....
T Consensus 90 ~v~~a~~~~~~~ 101 (107)
T 2cph_A 90 VLEWADSEVTVQ 101 (107)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999999875543
No 80
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.2e-18 Score=126.83 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCccCcHHHHH----hhhccCCceEEEEeeCC---CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 271 DPNNTTIFVGGLDPSVTDDILK----TVFGQYGELVHVKIPAG---KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~G~v~~v~i~~~---~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
....++|||+|||+.+++++|+ ++|+.||.|.+|+|+.+ +++|||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456889999999999999999 99999999999999876 8899999999999999999999999999999999
Q ss_pred eccCCCCC
Q 015468 344 WGRSPSNK 351 (406)
Q Consensus 344 ~~~~~~~~ 351 (406)
++++....
T Consensus 86 ~a~~~~~~ 93 (96)
T 2dgx_A 86 LATGASGP 93 (96)
T ss_dssp ECCCSSCC
T ss_pred EcCCCCCC
Confidence 99876543
No 81
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=1.4e-17 Score=128.64 Aligned_cols=84 Identities=31% Similarity=0.621 Sum_probs=76.5
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEE
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRL 342 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 342 (406)
......++|||+|||..+++++|+++|+.||.|.+|.|+++ +++|||+|.+.++|.+|+..|++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999876 589999999999999999999999999999999
Q ss_pred eeccCCCCCC
Q 015468 343 SWGRSPSNKQ 352 (406)
Q Consensus 343 ~~~~~~~~~~ 352 (406)
+|++++....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9999876543
No 82
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=125.54 Aligned_cols=82 Identities=20% Similarity=0.449 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
.....++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|+. |++..|+|+.|+|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3456689999999999999999999999999999999764 6899999999999999999 99999999999999
Q ss_pred eccCCCCCC
Q 015468 344 WGRSPSNKQ 352 (406)
Q Consensus 344 ~~~~~~~~~ 352 (406)
+++++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 999875543
No 83
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=2e-18 Score=142.24 Aligned_cols=136 Identities=16% Similarity=0.307 Sum_probs=74.8
Q ss_pred EEeCCHHHHHHHHHHhcCcccC--CcceEeCcCccccccccccccccc--cCCCCCCCCCCCCCCceEEEcCCCccCcHH
Q 015468 214 VRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAATKKAATGQQYQKAT--YQNTQGSQGENDPNNTTIFVGGLDPSVTDD 289 (406)
Q Consensus 214 v~f~~~~~a~~a~~~l~g~~~~--g~~i~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~ 289 (406)
.+|.+.++|+.|+..+++.... |+.+...+........ ..... ........+......++|||+|||..++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~ 87 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS---YERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQED 87 (165)
T ss_dssp ----------------------------------------------------------CCCCC-CEEEEEESCCTTCCHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccC---ccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHH
Confidence 7899999999999888876554 5555555432211000 00000 001112223344567899999999999999
Q ss_pred HHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCCCC
Q 015468 290 ILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQ 352 (406)
Q Consensus 290 ~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 352 (406)
+|+++|+.||.|..|.|+.+ +++|||+|.+.++|.+||..||+..|.|+.|.|.|++++....
T Consensus 88 ~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 88 EIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999999999875 6899999999999999999999999999999999999775543
No 84
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.5e-18 Score=126.84 Aligned_cols=82 Identities=21% Similarity=0.421 Sum_probs=75.3
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
.....++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999999999865 5799999999999999999999999999999999
Q ss_pred eccCCCCC
Q 015468 344 WGRSPSNK 351 (406)
Q Consensus 344 ~~~~~~~~ 351 (406)
|++++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99987554
No 85
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=2.7e-18 Score=141.43 Aligned_cols=130 Identities=19% Similarity=0.289 Sum_probs=80.4
Q ss_pred EEEcCHHHHHHHHHHhCCCCCCCCCccceecccccC---------------CCCCcCCCCCCceEEEcCCCCCCCHHHHH
Q 015468 120 IEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYG---------------AGERRQDDGPDFTIFVGDLAADVTDYVLQ 184 (406)
Q Consensus 120 V~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~ 184 (406)
.+|++.++|+.|+..|++......+..+...++... .........+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 789999999999999998776644444444332111 01112234456789999999999999999
Q ss_pred HHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcccccc
Q 015468 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250 (406)
Q Consensus 185 ~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 250 (406)
++|++ ||.|..|.|+.+..+++++|||||+|.+.++|.+||+.|++..|.|+.|.|.|+..+...
T Consensus 91 ~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHhhc-CCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 99998 999999999999889999999999999999999999999999999999999999776543
No 86
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=128.59 Aligned_cols=78 Identities=14% Similarity=0.267 Sum_probs=70.2
Q ss_pred CceEEEcCCCccCcHHHHHhhhccCC-ceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHh-CCceeCCceeEEeec
Q 015468 274 NTTIFVGGLDPSVTDDILKTVFGQYG-ELVHVKIPAG------KRCGFVQFANRTCAEQALSVL-NGTQLGGQSIRLSWG 345 (406)
Q Consensus 274 ~~~l~v~~l~~~~~~~~l~~~f~~~G-~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~ 345 (406)
+++|||+|||.++|+++|+++|+.|| .|.+|+|+++ +|||||+|.+.++|.+|++.+ ++..++|+.|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999764 689999999999999999987 456799999999999
Q ss_pred cCCCCC
Q 015468 346 RSPSNK 351 (406)
Q Consensus 346 ~~~~~~ 351 (406)
+++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 987543
No 87
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-18 Score=127.48 Aligned_cols=80 Identities=28% Similarity=0.570 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCccCcHHHHHhhhccCCceEEE-EeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 272 PNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV-KIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 272 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v-~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
..+++|||+|||.++++++|+++|+.||.|.+| .|+++ +++|||+|.+.++|.+|+..||+..|+|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346899999999999999999999999999999 88775 78999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 015468 345 GRSPSNK 351 (406)
Q Consensus 345 ~~~~~~~ 351 (406)
++++..+
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9987544
No 88
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=8.1e-18 Score=127.96 Aligned_cols=89 Identities=15% Similarity=0.336 Sum_probs=78.3
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCC-CCCCcc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM-PSTEQN 146 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~-~~~~~~ 146 (406)
..+...++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|++..+ .+..+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456678999999999999999999999999999999999988999999999999999999999999999874 444677
Q ss_pred ceecccccCC
Q 015468 147 FRLNWATYGA 156 (406)
Q Consensus 147 v~~~~~~~~~ 156 (406)
+.+.++....
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 7777776443
No 89
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.2e-18 Score=127.62 Aligned_cols=83 Identities=27% Similarity=0.519 Sum_probs=75.9
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
.....++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999765 7899999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 015468 344 WGRSPSNKQ 352 (406)
Q Consensus 344 ~~~~~~~~~ 352 (406)
|++++..+.
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 999876543
No 90
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=124.24 Aligned_cols=77 Identities=35% Similarity=0.679 Sum_probs=73.0
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHh-CCceeCCceeEEeecc
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVL-NGTQLGGQSIRLSWGR 346 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~ 346 (406)
.....++|||+|||..+++++|+++|+.||.|.+|.+.+++++|||+|.+.++|.+|+..| ++..++|+.|+|+|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3456689999999999999999999999999999999999999999999999999999999 9999999999999985
No 91
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=9.3e-18 Score=127.38 Aligned_cols=82 Identities=23% Similarity=0.457 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCC---ceeEE
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGFVQFANRTCAEQALSVLNGTQLGG---QSIRL 342 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g---~~l~v 342 (406)
....++|||+|||..+++++|+++|+.||.|.+|.|.++ +++|||+|.+.++|.+|+..||+..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 355789999999999999999999999999999999876 7899999999999999999999999998 99999
Q ss_pred eeccCCCCCC
Q 015468 343 SWGRSPSNKQ 352 (406)
Q Consensus 343 ~~~~~~~~~~ 352 (406)
+|++++..+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999876543
No 92
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=127.04 Aligned_cols=83 Identities=28% Similarity=0.534 Sum_probs=75.8
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEE
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRL 342 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 342 (406)
......++|||+|||..+++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..|++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999999999999999999999999999999875 579999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 015468 343 SWGRSPSNK 351 (406)
Q Consensus 343 ~~~~~~~~~ 351 (406)
++++++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999987543
No 93
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=127.89 Aligned_cols=87 Identities=46% Similarity=0.837 Sum_probs=78.0
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCee-EEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc-
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN- 146 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~-~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~- 146 (406)
.....++|||+|||+++++++|+++|+.||.|. +|++++++.+++++|||||+|.+.++|++|++.|++..+.++...
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 356689999999999999999999999999999 999999998999999999999999999999999999999876532
Q ss_pred -ceecccccC
Q 015468 147 -FRLNWATYG 155 (406)
Q Consensus 147 -v~~~~~~~~ 155 (406)
+++.|+...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 777777643
No 94
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=8e-19 Score=129.58 Aligned_cols=84 Identities=15% Similarity=0.309 Sum_probs=73.1
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCC--eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCC--CCCCc
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGE--FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM--PSTEQ 145 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~--v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~--~~~~~ 145 (406)
...-.||||+|||+++|+++|+++|+.||. +.+|++++|+.+|+++|||||+|.+.++|.+|++.|++... ...++
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445678999999999999999999999995 67999999999999999999999999999999999999752 22356
Q ss_pred cceecccc
Q 015468 146 NFRLNWAT 153 (406)
Q Consensus 146 ~v~~~~~~ 153 (406)
.+.+.++.
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 77777765
No 95
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=123.99 Aligned_cols=82 Identities=28% Similarity=0.517 Sum_probs=74.0
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
..+++|||+|||.++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+.+ +.+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG--RPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS--SCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEE
Confidence 456899999999999999999999999999999999998899999999999999999999999999999975 455555
Q ss_pred cccc
Q 015468 151 WATY 154 (406)
Q Consensus 151 ~~~~ 154 (406)
++..
T Consensus 81 ~a~~ 84 (95)
T 2dnz_A 81 HVTE 84 (95)
T ss_dssp ESSC
T ss_pred Eccc
Confidence 5543
No 96
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.4e-18 Score=127.12 Aligned_cols=82 Identities=28% Similarity=0.463 Sum_probs=75.1
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
.....++|||+|||.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3455689999999999999999999999999999999764 6899999999999999999999999999999999
Q ss_pred eccCCCCC
Q 015468 344 WGRSPSNK 351 (406)
Q Consensus 344 ~~~~~~~~ 351 (406)
+++.....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99976544
No 97
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=9.1e-18 Score=129.65 Aligned_cols=86 Identities=24% Similarity=0.375 Sum_probs=76.6
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
......++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.|++..|.+ +.+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l 97 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM--KRL 97 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT--EEC
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC--EEE
Confidence 344567899999999999999999999999999999999998899999999999999999999999999999865 566
Q ss_pred eecccccC
Q 015468 148 RLNWATYG 155 (406)
Q Consensus 148 ~~~~~~~~ 155 (406)
++.++...
T Consensus 98 ~V~~a~~~ 105 (115)
T 2cpz_A 98 KVQLKRSK 105 (115)
T ss_dssp EEECCCCS
T ss_pred EEEEcCCC
Confidence 66666544
No 98
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=126.41 Aligned_cols=86 Identities=21% Similarity=0.421 Sum_probs=76.5
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
......++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..|.+ ..+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l 87 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG--KPI 87 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS--CBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC--eEE
Confidence 345667899999999999999999999999999999999998899999999999999999999999999999875 556
Q ss_pred eecccccC
Q 015468 148 RLNWATYG 155 (406)
Q Consensus 148 ~~~~~~~~ 155 (406)
++.++...
T Consensus 88 ~v~~a~~~ 95 (105)
T 1x5u_A 88 RVNKASAH 95 (105)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 66665543
No 99
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=127.22 Aligned_cols=85 Identities=27% Similarity=0.499 Sum_probs=75.6
Q ss_pred CCCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 015468 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (406)
Q Consensus 67 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 146 (406)
...+...++|||+|||.++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|++..+.+ +.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g--~~ 97 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG--RP 97 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS--SC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC--EE
Confidence 3445667899999999999999999999999999999999998899999999999999999999999999999976 44
Q ss_pred ceecccc
Q 015468 147 FRLNWAT 153 (406)
Q Consensus 147 v~~~~~~ 153 (406)
+++.++.
T Consensus 98 l~V~~a~ 104 (108)
T 2jrs_A 98 MKVGHVT 104 (108)
T ss_dssp CEEECSC
T ss_pred EEEEEcc
Confidence 5555554
No 100
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=3e-18 Score=129.12 Aligned_cols=77 Identities=23% Similarity=0.505 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 272 PNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 272 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
...++|||+|||.++++++|+++|+.||.|.+|+|.+.+++|||+|.+.++|.+|+..||+..++|+.|+|+|++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999864
No 101
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=139.76 Aligned_cols=81 Identities=16% Similarity=0.351 Sum_probs=71.2
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccC--CeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTG--EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
....++|||+|||+++|+++|+++|+.|| .|.+|+|+.++.+|+++|||||+|.+.++|++|++.|+|..|.++ .+
T Consensus 52 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr--~l 129 (156)
T 3n9u_C 52 RNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE--KV 129 (156)
T ss_dssp ----CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE--EC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe--Ee
Confidence 34668999999999999999999999999 999999999999999999999999999999999999999999764 44
Q ss_pred eeccc
Q 015468 148 RLNWA 152 (406)
Q Consensus 148 ~~~~~ 152 (406)
.|.++
T Consensus 130 ~V~~a 134 (156)
T 3n9u_C 130 DVRPA 134 (156)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 55444
No 102
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=124.66 Aligned_cols=83 Identities=13% Similarity=0.277 Sum_probs=74.1
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|++ |++..|.+ +.+.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g--~~l~V 83 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG--KKVEV 83 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS--CBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC--eEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999999 99999865 45566
Q ss_pred cccccC
Q 015468 150 NWATYG 155 (406)
Q Consensus 150 ~~~~~~ 155 (406)
.++...
T Consensus 84 ~~a~~~ 89 (99)
T 2dgs_A 84 KRAEPR 89 (99)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 665543
No 103
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=1.1e-17 Score=129.86 Aligned_cols=83 Identities=25% Similarity=0.395 Sum_probs=74.2
Q ss_pred CCCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 015468 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (406)
Q Consensus 67 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 146 (406)
.......++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.|++..|.++.
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 111 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR-- 111 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE--
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE--
Confidence 344567799999999999999999999999999999999999889999999999999999999999999999987644
Q ss_pred ceecc
Q 015468 147 FRLNW 151 (406)
Q Consensus 147 v~~~~ 151 (406)
+++.+
T Consensus 112 l~V~~ 116 (118)
T 2khc_A 112 LKVQL 116 (118)
T ss_dssp CCEEE
T ss_pred EEEEe
Confidence 44444
No 104
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=124.87 Aligned_cols=82 Identities=20% Similarity=0.366 Sum_probs=75.0
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
......++|||+|||.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456688999999999999999999999999999999875 4899999999999999999999999999999999
Q ss_pred eccCCCC
Q 015468 344 WGRSPSN 350 (406)
Q Consensus 344 ~~~~~~~ 350 (406)
+++++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9998754
No 105
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=123.09 Aligned_cols=79 Identities=24% Similarity=0.461 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
....++|||+|||.++++++|+++|+.||.|.+|.|.++ +|||+|.+.++|.+|+..||+..++|+.|+|+++++...
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 455688999999999999999999999999999999855 999999999999999999999999999999999998744
Q ss_pred C
Q 015468 351 K 351 (406)
Q Consensus 351 ~ 351 (406)
+
T Consensus 84 ~ 84 (90)
T 2dnp_A 84 K 84 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 106
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=126.00 Aligned_cols=86 Identities=21% Similarity=0.411 Sum_probs=76.3
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
......++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|++..|.+ +.+
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l 84 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG--RQI 84 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS--CCC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC--eEE
Confidence 345567899999999999999999999999999999999998899999999999999999999999999999975 555
Q ss_pred eecccccC
Q 015468 148 RLNWATYG 155 (406)
Q Consensus 148 ~~~~~~~~ 155 (406)
++.++...
T Consensus 85 ~v~~a~~~ 92 (102)
T 1x5s_A 85 RVDQAGKS 92 (102)
T ss_dssp EEEEEECC
T ss_pred EEEECCCC
Confidence 66665543
No 107
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.7e-18 Score=127.12 Aligned_cols=82 Identities=29% Similarity=0.558 Sum_probs=75.3
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
.....++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999874 6799999999999999999999999999999999
Q ss_pred eccCCCCC
Q 015468 344 WGRSPSNK 351 (406)
Q Consensus 344 ~~~~~~~~ 351 (406)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99987543
No 108
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=127.73 Aligned_cols=79 Identities=15% Similarity=0.342 Sum_probs=73.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCC--ccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc----ccCCcceE
Q 015468 167 FTIFVGDLAADVTDYVLQETFRAVYSS--VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV----LCSTRPMR 240 (406)
Q Consensus 167 ~~l~v~~l~~~~~~~~l~~~f~~~~g~--i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~----~~~g~~i~ 240 (406)
.+|||+|||+++|+++|+++|++ ||. |.+|++++|+.+++++|||||+|.+.++|.+|++.||+. .++|+.|.
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSP-YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHh-hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 48999999999999999999998 995 779999999999999999999999999999999999986 48999999
Q ss_pred eCcCcc
Q 015468 241 IGPAAT 246 (406)
Q Consensus 241 v~~~~~ 246 (406)
|+|+..
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999864
No 109
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.5e-17 Score=126.20 Aligned_cols=82 Identities=29% Similarity=0.344 Sum_probs=74.7
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
.....++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|+..||+..|+|+.|+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3455689999999999999999999999999999999876 68999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 015468 345 GRSPSNK 351 (406)
Q Consensus 345 ~~~~~~~ 351 (406)
++....+
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9865443
No 110
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-17 Score=123.52 Aligned_cols=80 Identities=25% Similarity=0.450 Sum_probs=73.2
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccC--CceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQY--GELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
......++|||+|||..+++++|+++|+.| |.|.+|.+. +++|||+|.+.++|.+|+..||+..|+|+.|+|+|++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 344567899999999999999999999999 999999886 6699999999999999999999999999999999999
Q ss_pred CCCC
Q 015468 347 SPSN 350 (406)
Q Consensus 347 ~~~~ 350 (406)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 111
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=7.6e-18 Score=121.99 Aligned_cols=75 Identities=25% Similarity=0.576 Sum_probs=71.2
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
.+|||+|||.++++++|+++|+.||.|.++.++.+ +++|||+|.+.++|.+|+..||+..++|+.|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999999866 789999999999999999999999999999999999976
Q ss_pred C
Q 015468 349 S 349 (406)
Q Consensus 349 ~ 349 (406)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=3.8e-18 Score=125.47 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=72.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCC--CccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 167 FTIFVGDLAADVTDYVLQETFRAVYS--SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 167 ~~l~v~~l~~~~~~~~l~~~f~~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
.+|||+||++++++++|+++|++ || .|.++.++.++.+|+++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 37999999999999999999998 99 9999999999989999999999999999999999999999999999999999
Q ss_pred ccccc
Q 015468 245 ATKKA 249 (406)
Q Consensus 245 ~~~~~ 249 (406)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87653
No 113
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.3e-18 Score=126.87 Aligned_cols=84 Identities=19% Similarity=0.383 Sum_probs=75.5
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.++.+++++|||||+|.+.++|++|++.|++..|.+ ..+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG--RELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT--BCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC--cEEE
Confidence 35567899999999999999999999999999999999998889999999999999999999999999999976 4555
Q ss_pred eccccc
Q 015468 149 LNWATY 154 (406)
Q Consensus 149 ~~~~~~ 154 (406)
+.++..
T Consensus 87 V~~a~~ 92 (103)
T 2dnm_A 87 VQVARY 92 (103)
T ss_dssp EEECSS
T ss_pred EEECCc
Confidence 566553
No 114
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.3e-18 Score=125.66 Aligned_cols=81 Identities=23% Similarity=0.453 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeC---------CCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEE
Q 015468 272 PNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA---------GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRL 342 (406)
Q Consensus 272 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~---------~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 342 (406)
...++|||+|||.++++++|+++|+.||.|.+|.|.. .+++|||+|.+.++|.+|+..||+..|+|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568899999999999999999999999999999874 2579999999999999999999999999999999
Q ss_pred eeccCCCCCC
Q 015468 343 SWGRSPSNKQ 352 (406)
Q Consensus 343 ~~~~~~~~~~ 352 (406)
++++++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9999875443
No 115
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=2.1e-17 Score=127.56 Aligned_cols=92 Identities=33% Similarity=0.591 Sum_probs=84.3
Q ss_pred CcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 015468 159 RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238 (406)
Q Consensus 159 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 238 (406)
......+.++|||+|||.++++++|+++|+. ||.|..|.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3445567789999999999999999999998 999999999999889999999999999999999999999999999999
Q ss_pred eEeCcCccccccc
Q 015468 239 MRIGPAATKKAAT 251 (406)
Q Consensus 239 i~v~~~~~~~~~~ 251 (406)
|+|.++..+....
T Consensus 87 l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 87 IRTNWATRKPPAP 99 (115)
T ss_dssp CEEEESSCCCCCS
T ss_pred EEEEEccCCCCCC
Confidence 9999998876544
No 116
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=124.85 Aligned_cols=81 Identities=14% Similarity=0.284 Sum_probs=72.6
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeE--------EEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVS--------GKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--------~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 141 (406)
....++|||+|||+++++++|+++|+.||.|.+ |+++.++.+|+++|||||+|.+.++|.+|++.|+|..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 344688999999999999999999999999999 999999889999999999999999999999999999997
Q ss_pred CCCccceeccc
Q 015468 142 STEQNFRLNWA 152 (406)
Q Consensus 142 ~~~~~v~~~~~ 152 (406)
++ .+++.++
T Consensus 90 g~--~l~V~~A 98 (99)
T 2la6_A 90 GN--PIKVSFA 98 (99)
T ss_dssp SS--BCEEEEC
T ss_pred Cc--EEEEEec
Confidence 64 4444443
No 117
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.1e-18 Score=127.47 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=74.2
Q ss_pred CCCceEEE--cCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCcee-----CCceeEEee
Q 015468 272 PNNTTIFV--GGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQL-----GGQSIRLSW 344 (406)
Q Consensus 272 ~~~~~l~v--~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~-----~g~~l~v~~ 344 (406)
.++++||| +||++++++++|+++|++||.|.+|.|+.+|+||||+|++.++|.+|+..|||+++ .|+.|.|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 34678999 77999999999999999999999999999999999999999999999999999998 689999999
Q ss_pred ccCCCCCC
Q 015468 345 GRSPSNKQ 352 (406)
Q Consensus 345 ~~~~~~~~ 352 (406)
++......
T Consensus 103 a~~~p~~~ 110 (114)
T 2cq2_A 103 VEKVQWSG 110 (114)
T ss_dssp ESCCCCSS
T ss_pred cccCcccC
Confidence 98765443
No 118
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=124.95 Aligned_cols=80 Identities=28% Similarity=0.456 Sum_probs=72.8
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEE
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRL 342 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 342 (406)
.....++|||+|||.++++++|+++|+.|| |.+|.|+.+ +++|||+|.+.++|.+|| .||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345568999999999999999999999999 999999754 679999999999999999 89999999999999
Q ss_pred eeccCCCCC
Q 015468 343 SWGRSPSNK 351 (406)
Q Consensus 343 ~~~~~~~~~ 351 (406)
++++++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999987543
No 119
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.3e-18 Score=126.84 Aligned_cols=79 Identities=24% Similarity=0.445 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCc-cCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 271 DPNNTTIFVGGLDP-SVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 271 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
....++|||+|||. .+++++|+++|+.||.|.+|.|. +++|||+|.+.++|.+|+..|++..+.|+.|+|+++++..
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 34568999999998 99999999999999999999996 7899999999999999999999999999999999998765
Q ss_pred CC
Q 015468 350 NK 351 (406)
Q Consensus 350 ~~ 351 (406)
..
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 120
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=5e-18 Score=131.16 Aligned_cols=104 Identities=16% Similarity=0.297 Sum_probs=93.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCc
Q 015468 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 243 (406)
.++++|||+|||.++++++|+++|++ ||.|..|.++.+ +.++|+|||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45569999999999999999999998 999999999876 45699999999999999999999999999999999999
Q ss_pred CccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCccCcHHHHHhhhccCCc
Q 015468 244 AATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGE 300 (406)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~ 300 (406)
+.+.... .+++...++++|.++|++||.
T Consensus 82 a~~~~~~-----------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF-----------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT-----------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh-----------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 9876532 367788899999999999984
No 121
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9e-18 Score=125.06 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=68.5
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCC--CCCCCCCcc
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNG--TQMPSTEQN 146 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~--~~~~~~~~~ 146 (406)
++...++|||+|||+++|+++|+++|+.||.|.+|+|+++ ||||||+|.+.++|++|++.|++ ..|. ++.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~--Gr~ 83 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR--GQP 83 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEET--TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceEC--CEE
Confidence 3456789999999999999999999999999999999874 79999999999999999998875 4554 567
Q ss_pred ceecccccCC
Q 015468 147 FRLNWATYGA 156 (406)
Q Consensus 147 v~~~~~~~~~ 156 (406)
+.+.++....
T Consensus 84 l~V~~A~~~~ 93 (105)
T 1sjq_A 84 IYIQFSNHKE 93 (105)
T ss_dssp CCBCCCSSSS
T ss_pred EEEEEcCCCC
Confidence 7777776543
No 122
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=2.9e-18 Score=126.16 Aligned_cols=78 Identities=15% Similarity=0.339 Sum_probs=68.4
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccC--CeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTG--EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
.+|||+|||+++|+++|+++|+.|| .|.+|+++.++.+|+++|||||+|.+.++|++|++.|+|..+.++. +++.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~--i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN--PVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC--CEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE--EEEEE
Confidence 4799999999999999999999999 9999999999999999999999999999999999999999997654 45554
Q ss_pred cc
Q 015468 152 AT 153 (406)
Q Consensus 152 ~~ 153 (406)
+.
T Consensus 80 ~~ 81 (90)
T 3p5t_L 80 SN 81 (90)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 123
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=1.1e-17 Score=127.99 Aligned_cols=77 Identities=29% Similarity=0.538 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCcc-CcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 272 PNNTTIFVGGLDPS-VTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 272 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
...++|||+|||.. +++++|+++|+.||.|.+|.| .+++|||+|++.++|.+|+..|++..|+|+.|+|++++.+..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 44589999999999 999999999999999999999 588999999999999999999999999999999999986543
No 124
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.4e-17 Score=121.63 Aligned_cols=79 Identities=24% Similarity=0.519 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
....++|||+|| ++++++|+++|+.||.|.+|.|.+.+++|||+|.+.++|.+|+..|++..|+|+.|+|+|++++..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 345689999996 899999999999999999999999999999999999999999999999999999999999998754
Q ss_pred C
Q 015468 351 K 351 (406)
Q Consensus 351 ~ 351 (406)
.
T Consensus 90 ~ 90 (97)
T 1x5p_A 90 L 90 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 125
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1.2e-17 Score=120.86 Aligned_cols=81 Identities=38% Similarity=0.652 Sum_probs=77.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcc
Q 015468 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (406)
Q Consensus 167 ~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 246 (406)
.+|||+|||.++++++|+++|++ ||.|.++.++.+..+++++|+|||+|.+.++|.+|++.|++..+.|+.|+|.++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 58999999999999999999998 99999999999988999999999999999999999999999999999999999887
Q ss_pred cc
Q 015468 247 KK 248 (406)
Q Consensus 247 ~~ 248 (406)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 126
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=2e-17 Score=127.76 Aligned_cols=89 Identities=22% Similarity=0.402 Sum_probs=82.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
....+.++|||+|||.++++++|+++|++ ||.|..|.|+.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44456679999999999999999999998 99999999999988999999999999999999999999999999999999
Q ss_pred eCcCcccccc
Q 015468 241 IGPAATKKAA 250 (406)
Q Consensus 241 v~~~~~~~~~ 250 (406)
|.++.++...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999877544
No 127
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-17 Score=125.13 Aligned_cols=88 Identities=27% Similarity=0.634 Sum_probs=81.5
Q ss_pred cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 015468 160 RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (406)
Q Consensus 160 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i 239 (406)
.....+.++|||+|||.++++++|+++|++ ||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTT-TSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 344556779999999999999999999998 9999999999998899999999999999999999999999999999999
Q ss_pred EeCcCcccc
Q 015468 240 RIGPAATKK 248 (406)
Q Consensus 240 ~v~~~~~~~ 248 (406)
+|.++.++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999987753
No 128
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=1.2e-17 Score=121.54 Aligned_cols=76 Identities=28% Similarity=0.577 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
....++|||+|||.++++++|+++|+.||.|.+|.|+++ +++|||+|.+.++|.+|+..||+..++|+.|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999998654 78999999999999999999999999999999999
Q ss_pred cc
Q 015468 345 GR 346 (406)
Q Consensus 345 ~~ 346 (406)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 129
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=125.98 Aligned_cols=82 Identities=20% Similarity=0.357 Sum_probs=74.4
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|++..|.+ ..+.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V 97 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG--QPISV 97 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS--SBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC--cEEEE
Confidence 4567899999999999999999999999999999999999899999999999999999999999999999975 45555
Q ss_pred cccc
Q 015468 150 NWAT 153 (406)
Q Consensus 150 ~~~~ 153 (406)
.++.
T Consensus 98 ~~a~ 101 (106)
T 1p27_B 98 DWCF 101 (106)
T ss_dssp EESE
T ss_pred Eeec
Confidence 5554
No 130
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=8.5e-18 Score=122.92 Aligned_cols=81 Identities=31% Similarity=0.588 Sum_probs=72.7
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
...++|||+|||.++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+.+ ..+++.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEE
Confidence 456899999999999999999999999999999999998899999999999999999999999999999865 556666
Q ss_pred ccc
Q 015468 151 WAT 153 (406)
Q Consensus 151 ~~~ 153 (406)
++.
T Consensus 82 ~a~ 84 (87)
T 3bs9_A 82 WAT 84 (87)
T ss_dssp EEC
T ss_pred ecC
Confidence 654
No 131
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=122.56 Aligned_cols=78 Identities=29% Similarity=0.487 Sum_probs=72.3
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEE
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRL 342 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 342 (406)
......++|||+|||.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 44556789999999999999999999999999999999764 679999999999999999999999999999999
Q ss_pred eecc
Q 015468 343 SWGR 346 (406)
Q Consensus 343 ~~~~ 346 (406)
+|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 132
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.5e-17 Score=125.52 Aligned_cols=84 Identities=23% Similarity=0.477 Sum_probs=75.9
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhC------CceeC
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLN------GTQLG 336 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~------~~~~~ 336 (406)
......++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|+..|| +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34456789999999999999999999999999999999854 7899999999999999999999 99999
Q ss_pred CceeEEeeccCCCCCC
Q 015468 337 GQSIRLSWGRSPSNKQ 352 (406)
Q Consensus 337 g~~l~v~~~~~~~~~~ 352 (406)
|+.|+|+|++++....
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999999875443
No 133
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=126.70 Aligned_cols=82 Identities=29% Similarity=0.468 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhcc-CCceEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHhCCce-eCCceeEEe
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQ-YGELVHVKIPAG-----KRCGFVQFANRTCAEQALSVLNGTQ-LGGQSIRLS 343 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~-~G~v~~v~i~~~-----~~~afV~f~~~~~a~~a~~~l~~~~-~~g~~l~v~ 343 (406)
....++|||+|||.++++++|+++|+. ||.|.+|.|+.+ +++|||+|.+.++|.+|+..|++.. |+|+.|+|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 345688999999999999999999999 999999999875 7899999999999999999999999 999999999
Q ss_pred eccCCCCCC
Q 015468 344 WGRSPSNKQ 352 (406)
Q Consensus 344 ~~~~~~~~~ 352 (406)
+++++....
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998765443
No 134
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=1.5e-17 Score=123.90 Aligned_cols=77 Identities=18% Similarity=0.411 Sum_probs=72.5
Q ss_pred CceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccC
Q 015468 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347 (406)
Q Consensus 274 ~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 347 (406)
+++|||+|||..+++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..|+|..++|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 578999999999999999999999999999999865 68999999999999999999999999999999999998
Q ss_pred CCC
Q 015468 348 PSN 350 (406)
Q Consensus 348 ~~~ 350 (406)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 653
No 135
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-17 Score=124.97 Aligned_cols=86 Identities=16% Similarity=0.415 Sum_probs=76.3
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEec-CCCCCccceEEEEEcCHHHHHHHHHHh-CCCCCCCCCc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRN-KQTNFSEGYGFIEFVSHAAAERVLQTF-NGTQMPSTEQ 145 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l-~~~~~~~~~~ 145 (406)
......++|||+|||+++++++|+++|+.||.|.+|+|+++ +.+++++|||||+|.+.++|.+|++.| ++..|.+ .
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g--~ 87 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG--R 87 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS--C
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC--C
Confidence 34566789999999999999999999999999999999998 778999999999999999999999999 8999975 5
Q ss_pred cceecccccC
Q 015468 146 NFRLNWATYG 155 (406)
Q Consensus 146 ~v~~~~~~~~ 155 (406)
.+.+.++...
T Consensus 88 ~l~v~~a~~~ 97 (107)
T 2cph_A 88 RLVLEWADSE 97 (107)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEeCCCC
Confidence 5666666543
No 136
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=123.83 Aligned_cols=86 Identities=22% Similarity=0.423 Sum_probs=80.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
....+.++|||+|||.++++++|+++|++ ||.|..+.++.+. +++++|+|||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKA-HGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44456779999999999999999999998 9999999999997 899999999999999999999999999999999999
Q ss_pred eCcCcccc
Q 015468 241 IGPAATKK 248 (406)
Q Consensus 241 v~~~~~~~ 248 (406)
|.++.++.
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99998765
No 137
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=122.40 Aligned_cols=82 Identities=34% Similarity=0.622 Sum_probs=76.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
+.++|||+|||.++++++|+++|++ ||.|.++.++.+..+++++|+|||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4569999999999999999999998 999999999999889999999999999999999999999999999999999998
Q ss_pred ccc
Q 015468 245 ATK 247 (406)
Q Consensus 245 ~~~ 247 (406)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 138
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=5.5e-18 Score=127.13 Aligned_cols=83 Identities=16% Similarity=0.259 Sum_probs=74.0
Q ss_pred CCCCceEEEeCCCC------CcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC
Q 015468 70 SDGIRSLWIGDLQP------WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (406)
Q Consensus 70 ~~~~~~l~V~nLp~------~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 143 (406)
...+++|||+|||. ++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.|||..|.+
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g- 81 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL- 81 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS-
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC-
Confidence 34578999999999 99999999999999999999999999999999999999999999999999999999975
Q ss_pred Cccceecccc
Q 015468 144 EQNFRLNWAT 153 (406)
Q Consensus 144 ~~~v~~~~~~ 153 (406)
.+.+++.++.
T Consensus 82 ~r~l~V~~a~ 91 (100)
T 3ns6_A 82 KHRLFLYTMK 91 (100)
T ss_dssp SCBCEEEESH
T ss_pred CeEEEEEECc
Confidence 2455555543
No 139
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=9.3e-18 Score=126.39 Aligned_cols=76 Identities=26% Similarity=0.437 Sum_probs=72.5
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
++|||+|||.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..|++..++|+.|+|++++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999987 99999999999999999999999999999999999998753
No 140
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=1.8e-17 Score=130.14 Aligned_cols=84 Identities=19% Similarity=0.349 Sum_probs=75.5
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
......++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.|++..|.+ ..|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g--~~l 118 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG--RRI 118 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS--SCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC--EEE
Confidence 345667899999999999999999999999999999999999899999999999999999999999999999975 555
Q ss_pred eecccc
Q 015468 148 RLNWAT 153 (406)
Q Consensus 148 ~~~~~~ 153 (406)
++.++.
T Consensus 119 ~V~~a~ 124 (129)
T 2kxn_B 119 RVDFSI 124 (129)
T ss_dssp EESCCS
T ss_pred EEEEec
Confidence 666554
No 141
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=124.47 Aligned_cols=85 Identities=19% Similarity=0.314 Sum_probs=75.7
Q ss_pred CCCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 015468 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (406)
Q Consensus 67 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 146 (406)
.......++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+.+ +.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~ 86 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG--RR 86 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT--EE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC--EE
Confidence 3445667899999999999999999999999999999999998889999999999999999999999999999865 55
Q ss_pred ceecccc
Q 015468 147 FRLNWAT 153 (406)
Q Consensus 147 v~~~~~~ 153 (406)
+++.++.
T Consensus 87 l~v~~a~ 93 (95)
T 2cqc_A 87 IRVSGPS 93 (95)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 5666554
No 142
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.9e-17 Score=123.40 Aligned_cols=85 Identities=20% Similarity=0.372 Sum_probs=74.6
Q ss_pred CCCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 015468 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (406)
Q Consensus 67 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 146 (406)
.......++|||+|||+++|+++|+++|+.||.|.+|+|+.+ ++++++||||+|.+.++|.+|++.|++..|.+ ..
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~ 84 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT--KP 84 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS--SB
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC--cE
Confidence 344567889999999999999999999999999999999997 78899999999999999999999999999965 55
Q ss_pred ceecccccC
Q 015468 147 FRLNWATYG 155 (406)
Q Consensus 147 v~~~~~~~~ 155 (406)
+.+.++...
T Consensus 85 l~V~~a~~~ 93 (103)
T 2d9p_A 85 LYVALAQRK 93 (103)
T ss_dssp CEEEECSSC
T ss_pred EEEEEeccc
Confidence 556665543
No 143
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.6e-18 Score=129.57 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=73.2
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
..++|||+|||.++++++|+++|+.||.|.+|.|++++++|||+|.+.++|.+|+..||+..|+|+.|.|+|++...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999998654
No 144
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=3.4e-17 Score=126.24 Aligned_cols=82 Identities=26% Similarity=0.459 Sum_probs=73.7
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
.+..++|||+|||+++|+++|+++|+.||.|.+|.|+.+. +|+++|||||+|.+.++|++|++.|++..|.++ .+.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~--~l~V 80 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGK--AIKV 80 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS--BCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCE--EEEE
Confidence 4567899999999999999999999999999999999997 899999999999999999999999999999764 5555
Q ss_pred ccccc
Q 015468 150 NWATY 154 (406)
Q Consensus 150 ~~~~~ 154 (406)
.++..
T Consensus 81 ~~a~~ 85 (116)
T 2fy1_A 81 EQAKK 85 (116)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 55543
No 145
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=124.70 Aligned_cols=87 Identities=24% Similarity=0.393 Sum_probs=81.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
..+.++|||+|||.++++++|+++|++ ||.|..|.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445679999999999999999999998 9999999999998899999999999999999999999999999999999999
Q ss_pred cCcccccc
Q 015468 243 PAATKKAA 250 (406)
Q Consensus 243 ~~~~~~~~ 250 (406)
++.++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99887654
No 146
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=122.50 Aligned_cols=85 Identities=24% Similarity=0.418 Sum_probs=79.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
....+.++|||+|||.++++++|+++|++ ||.|..+.++.+..+++++|+|||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44556779999999999999999999998 99999999999988899999999999999999999999999999999999
Q ss_pred eCcCcc
Q 015468 241 IGPAAT 246 (406)
Q Consensus 241 v~~~~~ 246 (406)
|.++..
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999764
No 147
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=123.83 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=73.9
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
......++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..|.+ +.+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l 88 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG--RVI 88 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT--EEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC--cEE
Confidence 345567899999999999999999999999999999999998889999999999999999999999999999875 455
Q ss_pred eeccc
Q 015468 148 RLNWA 152 (406)
Q Consensus 148 ~~~~~ 152 (406)
++.++
T Consensus 89 ~v~~a 93 (94)
T 2e5h_A 89 KASIA 93 (94)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 55543
No 148
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=125.54 Aligned_cols=90 Identities=26% Similarity=0.417 Sum_probs=83.0
Q ss_pred cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 015468 160 RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (406)
Q Consensus 160 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i 239 (406)
.....+.++|||+|||.++++++|+++|++ ||.|..|.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRP-FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 344566789999999999999999999998 9999999999998899999999999999999999999999999999999
Q ss_pred EeCcCcccccc
Q 015468 240 RIGPAATKKAA 250 (406)
Q Consensus 240 ~v~~~~~~~~~ 250 (406)
+|.++.++...
T Consensus 88 ~v~~a~~~~~~ 98 (103)
T 2cq0_A 88 NVEWAKPSTNS 98 (103)
T ss_dssp EEEESSCCCCS
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 149
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.8e-18 Score=124.73 Aligned_cols=79 Identities=24% Similarity=0.460 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCc-eEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCC-ceeCCceeEEeeccCC
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGE-LVHVKIPAGKRCGFVQFANRTCAEQALSVLNG-TQLGGQSIRLSWGRSP 348 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~-~~~~g~~l~v~~~~~~ 348 (406)
....++|||+|||.++++++|+++|+.||. |..+.+ ..+++|||+|.+.++|.+|+..||+ ..|+|+.|+|+|++++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 345688999999999999999999999999 555554 5689999999999999999999999 9999999999999976
Q ss_pred CC
Q 015468 349 SN 350 (406)
Q Consensus 349 ~~ 350 (406)
..
T Consensus 84 ~~ 85 (93)
T 2cqh_A 84 KL 85 (93)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 150
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.4e-17 Score=123.09 Aligned_cols=80 Identities=31% Similarity=0.503 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
....++|||+|||.++++++|+++|+.||.|.+|.|.++ +++|||+|.+.++|.+|+..|++..++|+.|+|++++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 445689999999999999999999999999999999863 6899999999999999999999999999999999999
Q ss_pred CCCC
Q 015468 347 SPSN 350 (406)
Q Consensus 347 ~~~~ 350 (406)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8654
No 151
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=1.3e-17 Score=128.40 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=67.9
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCce-----eEEeeccC
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQS-----IRLSWGRS 347 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~-----l~v~~~~~ 347 (406)
..++|||+|||+++++++|+++|+.||.|.+|.|+.+ ++|||+|++.++|.+||+.||+.+|+|+. |+|+.+.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 4588999999999999999999999999999999987 99999999999999999999999999998 77777776
Q ss_pred CC
Q 015468 348 PS 349 (406)
Q Consensus 348 ~~ 349 (406)
..
T Consensus 94 ~~ 95 (115)
T 3beg_B 94 RS 95 (115)
T ss_dssp --
T ss_pred CC
Confidence 43
No 152
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=8.8e-18 Score=127.48 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=70.6
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCC-ceEEEEee--CCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYG-ELVHVKIP--AGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G-~v~~v~i~--~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
..++|||+|||+++++++|+++|+.|| .|..+.|. +.+|+|||+|++.++|.+|++.|||.+|+|+.|+|++++.+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 457899999999999999999999999 99999986 358999999999999999999999999999999999998653
No 153
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.6e-17 Score=125.86 Aligned_cols=83 Identities=28% Similarity=0.433 Sum_probs=75.1
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceE--------EEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCce
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV--------HVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQ 334 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~--------~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~ 334 (406)
......++|||+|||.++++++|+++|+.||.|. .|+|..+ +++|||+|.+.++|.+|+..||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3445678999999999999999999999999998 6888765 6899999999999999999999999
Q ss_pred eCCceeEEeeccCCCCC
Q 015468 335 LGGQSIRLSWGRSPSNK 351 (406)
Q Consensus 335 ~~g~~l~v~~~~~~~~~ 351 (406)
|+|+.|+|++++++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999987543
No 154
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.73 E-value=1.7e-17 Score=126.18 Aligned_cols=80 Identities=26% Similarity=0.536 Sum_probs=73.4
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
......++|||+|||.++++++|+++|+.||.|.+|.|. +|+|||+|.+.++|.+|+..||+..++|+.|+|+|++++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 445667899999999999999999999999999999998 899999999999999999999999999999999999986
Q ss_pred CC
Q 015468 349 SN 350 (406)
Q Consensus 349 ~~ 350 (406)
..
T Consensus 104 ~~ 105 (108)
T 2jvo_A 104 AK 105 (108)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 155
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=121.13 Aligned_cols=77 Identities=31% Similarity=0.545 Sum_probs=71.7
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeC-------CCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeec
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA-------GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWG 345 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~-------~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 345 (406)
..++|||+|||.++++++|+++|+.||.|.+|.|.. .+++|||+|.+.++|.+|+..||+..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999999864 4789999999999999999999999999999999999
Q ss_pred cCCC
Q 015468 346 RSPS 349 (406)
Q Consensus 346 ~~~~ 349 (406)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 156
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=125.77 Aligned_cols=100 Identities=16% Similarity=0.338 Sum_probs=84.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcc
Q 015468 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (406)
Q Consensus 167 ~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 246 (406)
++|||+|||.++++++|+++|++ ||.|..+.+..+ ++|+|||+|.+.++|.+|++.|++..+.|+.|+|.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSY-YGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHH-HCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 38999999999999999999998 999999999877 689999999999999999999999999999999999988
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCceEEEcCCC
Q 015468 247 KKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLD 283 (406)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~ 283 (406)
+...... ...........+|||+||+
T Consensus 75 ~~~~~~~-----------~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 75 MPRRSRF-----------DRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCCSSCC-----------CSCCCSCCCCSCCCSCCCC
T ss_pred CCCcccC-----------CCCCccccCCCceecCCCC
Confidence 6533211 1112223446789999996
No 157
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.6e-17 Score=125.24 Aligned_cols=78 Identities=22% Similarity=0.427 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCccCcHHHHH---hhhccCCceEEEEeeCCC---------cEEEEEeCCHHHHHHHHHHhCCceeCCce
Q 015468 272 PNNTTIFVGGLDPSVTDDILK---TVFGQYGELVHVKIPAGK---------RCGFVQFANRTCAEQALSVLNGTQLGGQS 339 (406)
Q Consensus 272 ~~~~~l~v~~l~~~~~~~~l~---~~f~~~G~v~~v~i~~~~---------~~afV~f~~~~~a~~a~~~l~~~~~~g~~ 339 (406)
...++|||+|||.++++++|+ ++|+.||.|.+|.|.+++ |+|||+|++.++|.+|++.||+..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 446789999999999999999 999999999999998653 69999999999999999999999999999
Q ss_pred eEEeeccCCC
Q 015468 340 IRLSWGRSPS 349 (406)
Q Consensus 340 l~v~~~~~~~ 349 (406)
|+|+|++++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999999875
No 158
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.2e-17 Score=121.98 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=69.7
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
....+++|||+|||+++++++|+++|+.||.|.+|.+++ .||||||+|.+.++|.+|++.|++..+...++.+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345678999999999999999999999999999999886 37999999999999999999998766444566777
Q ss_pred ecccccCC
Q 015468 149 LNWATYGA 156 (406)
Q Consensus 149 ~~~~~~~~ 156 (406)
+.++....
T Consensus 85 V~~a~~~~ 92 (104)
T 1wex_A 85 FNYSTSKR 92 (104)
T ss_dssp EEECSSSS
T ss_pred EEEccCcc
Confidence 77776543
No 159
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=2.5e-17 Score=129.35 Aligned_cols=87 Identities=25% Similarity=0.421 Sum_probs=81.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
....+.++|||+|||.++++++|+++|++ ||.|..|.++.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44556779999999999999999999998 99999999999988999999999999999999999999999999999999
Q ss_pred eCcCcccc
Q 015468 241 IGPAATKK 248 (406)
Q Consensus 241 v~~~~~~~ 248 (406)
|.++.+++
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998764
No 160
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=1.1e-17 Score=129.17 Aligned_cols=105 Identities=13% Similarity=0.178 Sum_probs=87.6
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
+..+++|||+|||+++++++|+++|+.||.|.+|.++.+ +.++|||||+|.+.++|.+|++.|+|..+.+ ..+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v 79 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSN--RYLVV 79 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSS--CBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECC--eEEEE
Confidence 345689999999999999999999999999999999875 4469999999999999999999999999975 45556
Q ss_pred cccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCC
Q 015468 150 NWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193 (406)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~ 193 (406)
.++...... .+++...++++|.++|++ ||.
T Consensus 80 ~~a~~~~~~-------------~~~~~~~~~~~l~~~~~~-~g~ 109 (115)
T 3lqv_A 80 LYYNANRAF-------------QKMDTKKKEEQLKLLKEK-YGI 109 (115)
T ss_dssp EECCHHHHT-------------TTSCHHHHHHHHHHHHHH-HCC
T ss_pred EEecCChhh-------------hhhhHhHhHHHHHHHHHH-hCC
Confidence 655432111 567778889999999998 874
No 161
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=1.6e-17 Score=123.77 Aligned_cols=85 Identities=24% Similarity=0.418 Sum_probs=80.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCc
Q 015468 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (406)
Q Consensus 166 ~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 245 (406)
+++|||+|||.++++++|+++|++ ||.|.++.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSN-VGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 569999999999999999999998 9999999999998889999999999999999999999999999999999999998
Q ss_pred cccccc
Q 015468 246 TKKAAT 251 (406)
Q Consensus 246 ~~~~~~ 251 (406)
++....
T Consensus 81 ~~~~~~ 86 (96)
T 2x1f_A 81 NSDISG 86 (96)
T ss_dssp CSSGGG
T ss_pred CCCCCC
Confidence 876543
No 162
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=126.83 Aligned_cols=81 Identities=30% Similarity=0.480 Sum_probs=75.0
Q ss_pred CCCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 268 GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 268 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
.......++|||+|||.++++++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|.+|+..|++..|+|+.|+|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 344556789999999999999999999999999999999876 7899999999999999999999999999999999
Q ss_pred eccCC
Q 015468 344 WGRSP 348 (406)
Q Consensus 344 ~~~~~ 348 (406)
+++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99875
No 163
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=124.78 Aligned_cols=86 Identities=22% Similarity=0.384 Sum_probs=80.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
...+.++|||+|||.++++++|+++|+. ||.|..|.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 3455679999999999999999999998 999999999999889999999999999999999999999999999999999
Q ss_pred CcCcccc
Q 015468 242 GPAATKK 248 (406)
Q Consensus 242 ~~~~~~~ 248 (406)
.++.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9987654
No 164
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=4.7e-17 Score=123.47 Aligned_cols=88 Identities=23% Similarity=0.403 Sum_probs=80.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCC---c
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST---R 237 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g---~ 237 (406)
....+.++|||+|||.++++++|+++|+. ||.|..|.|+.+. +++++|||||+|.+.++|.+|++.|++..+.+ +
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 34456789999999999999999999998 9999999999996 79999999999999999999999999999988 9
Q ss_pred ceEeCcCcccccc
Q 015468 238 PMRIGPAATKKAA 250 (406)
Q Consensus 238 ~i~v~~~~~~~~~ 250 (406)
.|+|.++..+...
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 9999999887644
No 165
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=4.5e-17 Score=122.08 Aligned_cols=84 Identities=27% Similarity=0.391 Sum_probs=78.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG--------AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV 232 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~ 232 (406)
....+.++|||+|||.++++++|+++|++ ||.|.. +.++.++.+++++|+|||+|.+.++|.+|++.|++.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 34456679999999999999999999998 999999 999999889999999999999999999999999999
Q ss_pred ccCCcceEeCcCc
Q 015468 233 LCSTRPMRIGPAA 245 (406)
Q Consensus 233 ~~~g~~i~v~~~~ 245 (406)
.+.|+.|+|+++.
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999863
No 166
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=123.07 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=69.2
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
..++++|||+|||+++|+++|+++|+.||.|.+|++++ .||+|||+|.+.++|.+|++.|++..+...++.+.+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 45678999999999999999999999999999999985 479999999999999999999999874435667777
Q ss_pred ccccc
Q 015468 150 NWATY 154 (406)
Q Consensus 150 ~~~~~ 154 (406)
.+++.
T Consensus 92 ~~S~~ 96 (100)
T 3r27_A 92 NYSTS 96 (100)
T ss_dssp EECSC
T ss_pred Eeccc
Confidence 77654
No 167
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.2e-17 Score=122.58 Aligned_cols=83 Identities=30% Similarity=0.484 Sum_probs=73.7
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcc-cCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCC-CCCCCccc
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGH-TGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQ-MPSTEQNF 147 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~-~~~~~~~v 147 (406)
....++|||+|||+++|+++|+++|+. ||.|.+|+|+.++ +|+++|||||+|.+.++|.+|++.|++.. +.++ .+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~--~l 82 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK--PV 82 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS--CC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCE--eE
Confidence 455688999999999999999999999 9999999999998 99999999999999999999999999999 8754 45
Q ss_pred eecccccC
Q 015468 148 RLNWATYG 155 (406)
Q Consensus 148 ~~~~~~~~ 155 (406)
.+.++...
T Consensus 83 ~v~~a~~~ 90 (104)
T 2dhg_A 83 RLSVAIPK 90 (104)
T ss_dssp CCCBCCCC
T ss_pred EEEEccCC
Confidence 55555433
No 168
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=123.99 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=70.7
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....++|||+|||+++|+++|+++|+.||.|.+|.|++++. |+++|||||+|.+.++|.+|+. +++..+.++.+.|..
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999976 9999999999999999999999 899999876655544
No 169
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=3.6e-17 Score=121.87 Aligned_cols=79 Identities=23% Similarity=0.426 Sum_probs=72.2
Q ss_pred CCCCCCceEEEcCCCc-cCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccC
Q 015468 269 ENDPNNTTIFVGGLDP-SVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 347 (406)
...+.+++|||+|||. ++++++|+++|+.||.|.+|.|. +|+|||+|.+.++|.+|+..||+..++|+.|+|+++++
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 3455678999999998 99999999999999999999985 78999999999999999999999999999999999987
Q ss_pred CC
Q 015468 348 PS 349 (406)
Q Consensus 348 ~~ 349 (406)
+.
T Consensus 95 ~~ 96 (97)
T 2xnq_A 95 NA 96 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 170
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=129.96 Aligned_cols=84 Identities=20% Similarity=0.371 Sum_probs=73.5
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeE--EEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCC----CCC
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVS--GKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGT----QMP 141 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~----~~~ 141 (406)
......++|||+|||+++|+++|+++|+.||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..|++. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34466789999999999999999999999999976 99999999999999999999999 999999999999 776
Q ss_pred CCCccceeccccc
Q 015468 142 STEQNFRLNWATY 154 (406)
Q Consensus 142 ~~~~~v~~~~~~~ 154 (406)
+ +.|+|.++..
T Consensus 97 g--r~l~V~~a~~ 107 (131)
T 2m2b_A 97 G--KTINVEFAKG 107 (131)
T ss_dssp G--CCCCCEECCC
T ss_pred C--EEEEEEECCC
Confidence 5 4555555543
No 171
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=2.1e-18 Score=136.41 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=69.1
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeec
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWG 345 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 345 (406)
....++|||+|||+++|+++|+++|+.|| |++|.|+.+ +|+|||+|++.++|.+|| .+|+..|+|+.|+|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34567899999999999999999999999 669998764 789999999999999999 68999999999999998
Q ss_pred cCCCC
Q 015468 346 RSPSN 350 (406)
Q Consensus 346 ~~~~~ 350 (406)
.....
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 87643
No 172
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=5.6e-17 Score=122.53 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=72.3
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEE
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRL 342 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 342 (406)
......++|||+|||.++++++|+++|+.|| |.+|.|+++ +++|||+|.+.++|.+|+ .||+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3345568999999999999999999999997 999999865 579999999999999999 89999999999999
Q ss_pred eeccCCCC
Q 015468 343 SWGRSPSN 350 (406)
Q Consensus 343 ~~~~~~~~ 350 (406)
++++++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99997654
No 173
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=1.8e-17 Score=120.55 Aligned_cols=82 Identities=24% Similarity=0.435 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
..+.++|||+|||.++++++|+++|++ ||.|..+.++.+..+++++|+|||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345679999999999999999999998 9999999999998899999999999999999999999999999999999999
Q ss_pred cCc
Q 015468 243 PAA 245 (406)
Q Consensus 243 ~~~ 245 (406)
++.
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 863
No 174
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=123.46 Aligned_cols=86 Identities=29% Similarity=0.541 Sum_probs=80.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGA-KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
.+.++|||+|||.++++++|+++|++ ||.|..+ .++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35669999999999999999999998 9999999 999998899999999999999999999999999999999999999
Q ss_pred cCcccccc
Q 015468 243 PAATKKAA 250 (406)
Q Consensus 243 ~~~~~~~~ 250 (406)
++.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99876544
No 175
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=3e-17 Score=125.68 Aligned_cols=81 Identities=22% Similarity=0.430 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
.....++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456689999999999999999999999999999999765 6899999999999999999999999999999999
Q ss_pred eccCCCC
Q 015468 344 WGRSPSN 350 (406)
Q Consensus 344 ~~~~~~~ 350 (406)
|++++..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987653
No 176
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=124.96 Aligned_cols=89 Identities=22% Similarity=0.390 Sum_probs=82.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
...+.++|||+|||.++++++|+++|++ ||.|..|.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3446679999999999999999999998 999999999999889999999999999999999999999999999999999
Q ss_pred CcCccccccc
Q 015468 242 GPAATKKAAT 251 (406)
Q Consensus 242 ~~~~~~~~~~ 251 (406)
.++.++....
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2cqb_A 87 NLAKPMRIKE 96 (102)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9998876543
No 177
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=121.55 Aligned_cols=79 Identities=28% Similarity=0.453 Sum_probs=71.5
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
...++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.||+..+.++ .+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ--MAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE--SCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE--EEeec
Confidence 4568999999999999999999999999999999999988999999999999999999999999999998654 44444
Q ss_pred c
Q 015468 151 W 151 (406)
Q Consensus 151 ~ 151 (406)
+
T Consensus 81 ~ 81 (85)
T 1x4e_A 81 G 81 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 178
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=122.94 Aligned_cols=78 Identities=36% Similarity=0.545 Sum_probs=72.6
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
.....++|||+|||..+++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3455689999999999999999999999999999999876 68999999999999999999999999999999999
Q ss_pred ccC
Q 015468 345 GRS 347 (406)
Q Consensus 345 ~~~ 347 (406)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 179
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=123.51 Aligned_cols=83 Identities=14% Similarity=0.396 Sum_probs=73.0
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
......++|||+|||+++++++|+++|+.||.|.+|+|+.++. ++++|||||+|.+.++|.+|++.|++..+.+ +.+
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l 87 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYG--RPI 87 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETT--EEC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECC--CEE
Confidence 3456679999999999999999999999999999999999975 8899999999999999999999999999875 455
Q ss_pred eecccc
Q 015468 148 RLNWAT 153 (406)
Q Consensus 148 ~~~~~~ 153 (406)
++.++.
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 555543
No 180
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-17 Score=126.26 Aligned_cols=85 Identities=25% Similarity=0.395 Sum_probs=75.1
Q ss_pred CCCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 015468 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (406)
Q Consensus 67 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 146 (406)
...+...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.+++ .|.+ +.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g--~~ 87 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG--RK 87 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT--EE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC--EE
Confidence 44466779999999999999999999999999999999999988999999999999999999999999998 6754 55
Q ss_pred ceeccccc
Q 015468 147 FRLNWATY 154 (406)
Q Consensus 147 v~~~~~~~ 154 (406)
++|.++..
T Consensus 88 l~V~~a~~ 95 (116)
T 2cqd_A 88 ANVNLAYL 95 (116)
T ss_dssp CEEEESTT
T ss_pred EEEEEccc
Confidence 66666653
No 181
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=5.3e-18 Score=127.21 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=78.5
Q ss_pred CCceEEEcCCCC------CCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCC-c
Q 015468 165 PDFTIFVGDLAA------DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST-R 237 (406)
Q Consensus 165 ~~~~l~v~~l~~------~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g-~ 237 (406)
..++|||+|||. ++++++|+++|++ ||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.||+..+.| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSK-AGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHT-TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHh-cCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 356999999999 9999999999998 9999999999999899999999999999999999999999999999 9
Q ss_pred ceEeCcCcccc
Q 015468 238 PMRIGPAATKK 248 (406)
Q Consensus 238 ~i~v~~~~~~~ 248 (406)
.|+|.++.++.
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999997754
No 182
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=121.98 Aligned_cols=85 Identities=21% Similarity=0.420 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCcc-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc---
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVK-GAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP--- 238 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~--- 238 (406)
....++|||+|||.++++++|+++|++ ||.|. .+.++.++.+++++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHH-TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345679999999999999999999998 99999 9999999889999999999999999999999999999999999
Q ss_pred -eEeCcCcccc
Q 015468 239 -MRIGPAATKK 248 (406)
Q Consensus 239 -i~v~~~~~~~ 248 (406)
|+|.|+.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987654
No 183
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.1e-17 Score=124.65 Aligned_cols=90 Identities=23% Similarity=0.388 Sum_probs=82.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc------Cccc
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN------GVLC 234 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~------g~~~ 234 (406)
....+.++|||+|||+++++++|+++|+. ||.|..|.++.+..+++++|||||+|.+.++|.+|++.++ +..+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 34456779999999999999999999998 9999999999998899999999999999999999999999 9999
Q ss_pred CCcceEeCcCccccccc
Q 015468 235 STRPMRIGPAATKKAAT 251 (406)
Q Consensus 235 ~g~~i~v~~~~~~~~~~ 251 (406)
.|+.|+|.++.++....
T Consensus 89 ~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SSCEEEEECCCCCCCCC
T ss_pred cCEEEEEEECCCCccCC
Confidence 99999999998875443
No 184
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=3.9e-17 Score=124.12 Aligned_cols=89 Identities=20% Similarity=0.469 Sum_probs=81.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc---CCc
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC---STR 237 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~---~g~ 237 (406)
......++|||+|||.++++++|+++|++ ||.|..|.++.+..+++++|||||+|.+.++|.+|++.|++..+ .++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEE-FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHH-HSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34556779999999999999999999998 99999999999988999999999999999999999999999987 899
Q ss_pred ceEeCcCcccccc
Q 015468 238 PMRIGPAATKKAA 250 (406)
Q Consensus 238 ~i~v~~~~~~~~~ 250 (406)
.|+|.++..+...
T Consensus 87 ~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 87 PIQVKPADSESRG 99 (106)
T ss_dssp CCEEEECCCCSCC
T ss_pred eEEEEECCccccc
Confidence 9999999876543
No 185
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=124.93 Aligned_cols=80 Identities=18% Similarity=0.288 Sum_probs=68.8
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecC-CCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNK-QTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
....++|||+|||+++++++|+++|+.|| |.+|+|++++ .+|+++|||||+|.+.++|.+|+ .|++..|.++. ++
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~--l~ 91 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR--IR 91 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC--CC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE--EE
Confidence 45678999999999999999999999999 9999999997 58999999999999999999999 89999997654 45
Q ss_pred ecccc
Q 015468 149 LNWAT 153 (406)
Q Consensus 149 ~~~~~ 153 (406)
+.++.
T Consensus 92 V~~a~ 96 (100)
T 2j76_E 92 VDVAD 96 (100)
T ss_dssp CEECC
T ss_pred EEecc
Confidence 55544
No 186
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=120.61 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=70.3
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEee--CCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP--AGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~--~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
......++|||+|||.++++++|+++|+.||.|.-+... +.+++|||+|.+.++|.+|+..||+..|.|+.|+|+|++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 345567999999999999999999999999988322211 137899999999999999999999999999999999999
Q ss_pred CCCC
Q 015468 347 SPSN 350 (406)
Q Consensus 347 ~~~~ 350 (406)
++..
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8743
No 187
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=8.3e-17 Score=118.93 Aligned_cols=80 Identities=19% Similarity=0.325 Sum_probs=70.9
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....++|||+|||+++++++|+++|+.||.|.+|+++++ +++++|||||+|.+.++|++|++.|++..+.++ .+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~--~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGR--EIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB--CCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCc--EEEE
Confidence 456789999999999999999999999999999999984 788999999999999999999999999999765 4555
Q ss_pred cccc
Q 015468 150 NWAT 153 (406)
Q Consensus 150 ~~~~ 153 (406)
.++.
T Consensus 81 ~~a~ 84 (92)
T 2dgv_A 81 RIDR 84 (92)
T ss_dssp EECS
T ss_pred EEcC
Confidence 5544
No 188
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=122.87 Aligned_cols=86 Identities=14% Similarity=0.326 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT---TGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
.+.++|||+|||.++++++|+++|++ ||.|..|.+..+.. +++++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35669999999999999999999998 99999999999865 568999999999999999999999999999999999
Q ss_pred eCcCcccccc
Q 015468 241 IGPAATKKAA 250 (406)
Q Consensus 241 v~~~~~~~~~ 250 (406)
|.++..+...
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876544
No 189
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.6e-17 Score=121.86 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=68.7
Q ss_pred CCCCceEEEeCCCC-CcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 70 SDGIRSLWIGDLQP-WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 70 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.+++++|||+|||+ ++|+++|+++|+.||.|.+|+|+++ ++||||+|.+.++|.+|++.|++......++.+.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45678999999999 9999999999999999999999874 6899999999999999999999866333466777
Q ss_pred ecccccC
Q 015468 149 LNWATYG 155 (406)
Q Consensus 149 ~~~~~~~ 155 (406)
|.++...
T Consensus 86 V~~a~~~ 92 (102)
T 1x4d_A 86 VHLSQKY 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 7777643
No 190
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.3e-17 Score=121.34 Aligned_cols=86 Identities=28% Similarity=0.514 Sum_probs=74.4
Q ss_pred CCCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 015468 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (406)
Q Consensus 67 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 146 (406)
.......++|||+|||+++++++|+++|+.||.|.+|+|++++.+ ++|||||+|.+.++|.+|++.|++..|.+ +.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~ 84 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILG--KE 84 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETT--EE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCC--Ce
Confidence 344567799999999999999999999999999999999998543 68999999999999999999999999864 56
Q ss_pred ceecccccCC
Q 015468 147 FRLNWATYGA 156 (406)
Q Consensus 147 v~~~~~~~~~ 156 (406)
+++.++....
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2cqi_A 85 VKVNWATTPS 94 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEECCCCc
Confidence 6777766543
No 191
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=127.07 Aligned_cols=80 Identities=13% Similarity=0.419 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCccCcHHHHH----hhhccCCceEEEEeeC---CCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 271 DPNNTTIFVGGLDPSVTDDILK----TVFGQYGELVHVKIPA---GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~G~v~~v~i~~---~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
..++++|||+||++.+++++|+ ++|+.||.|.+|.+.+ .+|+|||+|.+.++|.+|+..|||..|.|+.|+|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4456899999999999999876 6999999999998864 48999999999999999999999999999999999
Q ss_pred eccCCCC
Q 015468 344 WGRSPSN 350 (406)
Q Consensus 344 ~~~~~~~ 350 (406)
|++.+..
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 9997653
No 192
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=9.8e-17 Score=123.66 Aligned_cols=82 Identities=16% Similarity=0.287 Sum_probs=72.9
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++ ++++++||||+|.+.++|++|++.|++..|.++ .+.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR--PMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC--EEE
Confidence 34567899999999999999999999999999999999996 588999999999999999999999999999754 455
Q ss_pred ecccc
Q 015468 149 LNWAT 153 (406)
Q Consensus 149 ~~~~~ 153 (406)
+.++.
T Consensus 88 v~~a~ 92 (114)
T 2do0_A 88 VKMDE 92 (114)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 55554
No 193
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-17 Score=123.35 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=73.6
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.....++|||+|||+++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|++|++.|++..|.++ .++
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~--~l~ 88 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR--KVK 88 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE--ECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe--EEE
Confidence 345578999999999999999999999999999999999988999999999999999999999999999999764 455
Q ss_pred ecccc
Q 015468 149 LNWAT 153 (406)
Q Consensus 149 ~~~~~ 153 (406)
+.++.
T Consensus 89 V~~a~ 93 (98)
T 2cqp_A 89 LVLGS 93 (98)
T ss_dssp EEESS
T ss_pred EEEcC
Confidence 55543
No 194
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=120.41 Aligned_cols=85 Identities=24% Similarity=0.436 Sum_probs=73.3
Q ss_pred CCCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 015468 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (406)
Q Consensus 67 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 146 (406)
.......++|||+|||+++++++|+++|+.||.|.+|+|+.++. .+++||||+|.+.++|.+|++.|++..|.+ +.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~ 84 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG--RK 84 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT--EE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC--EE
Confidence 34456779999999999999999999999999999999999753 389999999999999999999999999965 55
Q ss_pred ceecccccC
Q 015468 147 FRLNWATYG 155 (406)
Q Consensus 147 v~~~~~~~~ 155 (406)
+.+.++...
T Consensus 85 l~v~~a~~~ 93 (103)
T 2cq3_A 85 IEVNNATAR 93 (103)
T ss_dssp CEEEECCSS
T ss_pred EEEEEcccC
Confidence 666665543
No 195
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.2e-17 Score=124.54 Aligned_cols=89 Identities=22% Similarity=0.306 Sum_probs=82.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCcc--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVK--------GAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV 232 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~ 232 (406)
......++|||+|||.++++++|+++|++ ||.|. .|.++.++.+++++|||||+|.+.++|.+|++.|++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 44566789999999999999999999998 99999 6999999889999999999999999999999999999
Q ss_pred ccCCcceEeCcCcccccc
Q 015468 233 LCSTRPMRIGPAATKKAA 250 (406)
Q Consensus 233 ~~~g~~i~v~~~~~~~~~ 250 (406)
.+.|+.|+|.++..+...
T Consensus 89 ~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp EETTEECEEECSSCCCCS
T ss_pred ccCCCEEEEEECCCCCCC
Confidence 999999999999886544
No 196
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=4.2e-17 Score=124.87 Aligned_cols=87 Identities=24% Similarity=0.407 Sum_probs=80.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
....+.++|||+|||.++++++|+++|++ ||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34455679999999999999999999998 99999999999988999999999999999999999999999999999999
Q ss_pred eCcCcccc
Q 015468 241 IGPAATKK 248 (406)
Q Consensus 241 v~~~~~~~ 248 (406)
|.++.++.
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99987754
No 197
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=6.2e-17 Score=127.14 Aligned_cols=83 Identities=18% Similarity=0.337 Sum_probs=74.5
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....++|||+|||+++|+++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|++|++.|++..|.+. .|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v 96 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ--PISV 96 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS--BCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe--EEEE
Confidence 45578999999999999999999999999999999999988999999999999999999999999999999754 5555
Q ss_pred ccccc
Q 015468 150 NWATY 154 (406)
Q Consensus 150 ~~~~~ 154 (406)
.++..
T Consensus 97 ~~a~~ 101 (126)
T 3ex7_B 97 DWCFV 101 (126)
T ss_dssp EESEE
T ss_pred EEecC
Confidence 55543
No 198
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.6e-17 Score=120.29 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=67.7
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
....+++|||+|||+++++++|+++|+.||.|.+|.++++ +|||||+|.+.++|.+|++.|++..+...++.+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999998863 7999999999999999999876433222456777
Q ss_pred ecccccCC
Q 015468 149 LNWATYGA 156 (406)
Q Consensus 149 ~~~~~~~~ 156 (406)
+.++....
T Consensus 85 V~~a~~~~ 92 (101)
T 2cq1_A 85 IQYSNHKE 92 (101)
T ss_dssp EEECSCSS
T ss_pred EEEcCccc
Confidence 77776443
No 199
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=3e-17 Score=125.15 Aligned_cols=85 Identities=24% Similarity=0.346 Sum_probs=69.4
Q ss_pred CCCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 015468 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (406)
Q Consensus 67 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 146 (406)
.......++|||+|||+++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++.+ +..|.+ +.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g--~~ 95 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS--KT 95 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT--EE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC--EE
Confidence 344566789999999999999999999999999999999999889999999999999999999999965 466654 55
Q ss_pred ceeccccc
Q 015468 147 FRLNWATY 154 (406)
Q Consensus 147 v~~~~~~~ 154 (406)
+.+.++..
T Consensus 96 l~V~~a~~ 103 (109)
T 2rs2_A 96 IDPKVAFP 103 (109)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 66666553
No 200
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.3e-17 Score=123.15 Aligned_cols=82 Identities=30% Similarity=0.500 Sum_probs=74.5
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEE
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRL 342 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 342 (406)
......++|||+|||..+++++|+++|+.||.|.+|.|+++ +++|||+|++.++|.+||.. ++..|+|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34566789999999999999999999999999999999875 47999999999999999998 999999999999
Q ss_pred eeccCCCCC
Q 015468 343 SWGRSPSNK 351 (406)
Q Consensus 343 ~~~~~~~~~ 351 (406)
++++++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999977543
No 201
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=3.3e-17 Score=119.72 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=67.7
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 144 (406)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++ +++..+.++.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 81 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRV 81 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEE
Confidence 35667899999999999999999999999999999999998899999999999999999999997 5776675533
No 202
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=8.1e-17 Score=121.63 Aligned_cols=87 Identities=23% Similarity=0.488 Sum_probs=79.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
....+.++|||+|||.++++++|+++|++ || |..|.++.+..+++++|||||+|.+.++|.+|+ .|++..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKD-LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTT-SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHh-CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34455679999999999999999999998 86 999999999889999999999999999999999 9999999999999
Q ss_pred eCcCcccccc
Q 015468 241 IGPAATKKAA 250 (406)
Q Consensus 241 v~~~~~~~~~ 250 (406)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999876543
No 203
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=125.07 Aligned_cols=83 Identities=24% Similarity=0.504 Sum_probs=74.4
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
+...++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|++..+.+ ..+++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v 82 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG--RALRV 82 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS--SCBEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC--cEEEE
Confidence 3456899999999999999999999999999999999998899999999999999999999999999999965 45566
Q ss_pred ccccc
Q 015468 150 NWATY 154 (406)
Q Consensus 150 ~~~~~ 154 (406)
.++..
T Consensus 83 ~~a~~ 87 (104)
T 1p1t_A 83 DNAAS 87 (104)
T ss_dssp EETTC
T ss_pred EeCCC
Confidence 66543
No 204
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-16 Score=121.49 Aligned_cols=84 Identities=21% Similarity=0.417 Sum_probs=74.1
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC-----
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST----- 143 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~----- 143 (406)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.|++..|.+.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999997 899999999999999999999999999999653
Q ss_pred -Cccceecccc
Q 015468 144 -EQNFRLNWAT 153 (406)
Q Consensus 144 -~~~v~~~~~~ 153 (406)
...+.+.++.
T Consensus 100 ~~~~l~v~~a~ 110 (114)
T 1x5o_A 100 PTEPLLCKFSG 110 (114)
T ss_dssp CSSCBEEEECC
T ss_pred CCCceeEEccC
Confidence 3445555554
No 205
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.2e-17 Score=123.36 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=67.8
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCC--CCCCCCCccc
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNG--TQMPSTEQNF 147 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~--~~~~~~~~~v 147 (406)
...+++|||+|||+++|+++|+++|+.||.|.+|+|+++ +|||||+|++.++|.+|++.|++ ..|. ++.+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~--Gr~l 99 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR--GQPI 99 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBT--TBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceEC--CeEE
Confidence 455789999999999999999999999999999999874 79999999999999999998885 4554 5667
Q ss_pred eecccccCC
Q 015468 148 RLNWATYGA 156 (406)
Q Consensus 148 ~~~~~~~~~ 156 (406)
.+.++....
T Consensus 100 ~V~~a~~k~ 108 (119)
T 2ad9_A 100 YIQFSNHKE 108 (119)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCCC
Confidence 777766443
No 206
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=6e-17 Score=123.32 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=72.5
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|.+|++.|++..|.++ .++
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 101 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGR--PMN 101 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc--EEE
Confidence 34567899999999999999999999999999999999997 899999999999999999999999999999754 444
Q ss_pred eccc
Q 015468 149 LNWA 152 (406)
Q Consensus 149 ~~~~ 152 (406)
+.++
T Consensus 102 V~~a 105 (107)
T 3ulh_A 102 IQLV 105 (107)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 207
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.4e-17 Score=122.04 Aligned_cols=88 Identities=24% Similarity=0.366 Sum_probs=81.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
......++|||+|||+++++++|+++|++ ||.|..|.++.++.+++++|||||+|.+.++|.+|++. ++..|.|+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 44556779999999999999999999998 99999999999988999999999999999999999988 99999999999
Q ss_pred eCcCcccccc
Q 015468 241 IGPAATKKAA 250 (406)
Q Consensus 241 v~~~~~~~~~ 250 (406)
|.++.++...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999877644
No 208
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=132.02 Aligned_cols=84 Identities=23% Similarity=0.344 Sum_probs=78.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCC--CccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYS--SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
..++|||+||++++++++|+++|+. || .|.+|.|+.|+.+|+++|||||+|.+.++|.+||+.|++..|.|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3469999999999999999999998 99 99999999999999999999999999999999999999999999999999
Q ss_pred cCccccc
Q 015468 243 PAATKKA 249 (406)
Q Consensus 243 ~~~~~~~ 249 (406)
++.++..
T Consensus 133 ~a~~~~~ 139 (156)
T 3n9u_C 133 PATRQNL 139 (156)
T ss_dssp ECCHHHH
T ss_pred EcCCCcc
Confidence 9977543
No 209
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=122.30 Aligned_cols=80 Identities=20% Similarity=0.364 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCccCcHHHHHhhhccCCc-eEEEEee-------CCCcEEEEEeCCHHHHHHHHHHhC--CceeCCceeE
Q 015468 272 PNNTTIFVGGLDPSVTDDILKTVFGQYGE-LVHVKIP-------AGKRCGFVQFANRTCAEQALSVLN--GTQLGGQSIR 341 (406)
Q Consensus 272 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-v~~v~i~-------~~~~~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~ 341 (406)
...++|||+|||.++++++|+++|+.||. |.+|.|+ +.+++|||+|.+.++|.+|+..|+ +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45688999999999999999999999998 9999998 458999999999999999999996 5899999999
Q ss_pred EeeccCCCCC
Q 015468 342 LSWGRSPSNK 351 (406)
Q Consensus 342 v~~~~~~~~~ 351 (406)
|+|++++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999987654
No 210
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.3e-17 Score=121.51 Aligned_cols=85 Identities=15% Similarity=0.219 Sum_probs=78.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
.....++|||+|||+++++++|+++|++ ||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTT-SCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3445678999999999999999999998 999999989988889999999999999999999999999999999999999
Q ss_pred CcCccc
Q 015468 242 GPAATK 247 (406)
Q Consensus 242 ~~~~~~ 247 (406)
+++..+
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998654
No 211
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.7e-17 Score=122.28 Aligned_cols=82 Identities=15% Similarity=0.091 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
....++|||+|||+++|+++|+++|++ ||.|.+|.++++.. ++++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 445569999999999999999999998 99999999999976 9999999999999999999997 89999999999999
Q ss_pred cCccc
Q 015468 243 PAATK 247 (406)
Q Consensus 243 ~~~~~ 247 (406)
++...
T Consensus 85 ~~~~~ 89 (103)
T 1s79_A 85 FKDDY 89 (103)
T ss_dssp EHHHH
T ss_pred EchHH
Confidence 87653
No 212
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=119.04 Aligned_cols=80 Identities=24% Similarity=0.504 Sum_probs=71.3
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEee--CCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccC
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP--AGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~--~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 347 (406)
.....++|||+|||.++++++|+++|+.||.|. +.++ +.+++|||+|.+.++|.+|+..||+..|+|+.|+|+++++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 344568999999999999999999999999996 4444 4589999999999999999999999999999999999998
Q ss_pred CCC
Q 015468 348 PSN 350 (406)
Q Consensus 348 ~~~ 350 (406)
+..
T Consensus 94 ~~~ 96 (97)
T 2e5j_A 94 QRD 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 213
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.6e-17 Score=121.09 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=69.2
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.+...++|||+|||+++|+++|+++|+.||.+ +|+|+.++ +++++|||||+|.+.++|++|++ +++..|.++. |+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~--i~ 85 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRY--VE 85 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSC--CE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcE--EE
Confidence 34566899999999999999999999999955 99999997 89999999999999999999995 8998887654 44
Q ss_pred ecccc
Q 015468 149 LNWAT 153 (406)
Q Consensus 149 ~~~~~ 153 (406)
+.++.
T Consensus 86 V~~~~ 90 (102)
T 1wez_A 86 LFLNS 90 (102)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 44443
No 214
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=127.26 Aligned_cols=82 Identities=12% Similarity=0.298 Sum_probs=72.9
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|+ .|++..|.++ .+.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~l~ 97 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV--PII 97 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTE--EEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe--EEE
Confidence 3455789999999999999999999999999999999999988999999999999999999999 8999999754 455
Q ss_pred ecccc
Q 015468 149 LNWAT 153 (406)
Q Consensus 149 ~~~~~ 153 (406)
+.++.
T Consensus 98 V~~a~ 102 (114)
T 2cq4_A 98 VQASQ 102 (114)
T ss_dssp EEEHH
T ss_pred EEecC
Confidence 55443
No 215
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=120.92 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=68.0
Q ss_pred CCCCCceEEEeCCCCC-cCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 69 SSDGIRSLWIGDLQPW-MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
....+++|||+|||++ +++++|+++|+.||.|.+|+|++ ++|||||+|.+.++|.+|++.|++..+...++.+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3556889999999998 99999999999999999999975 5899999999999999999998765433345666
Q ss_pred eecccccC
Q 015468 148 RLNWATYG 155 (406)
Q Consensus 148 ~~~~~~~~ 155 (406)
.+.++...
T Consensus 95 ~V~~a~~~ 102 (112)
T 1x4f_A 95 KVDLSEKY 102 (112)
T ss_dssp EEEEECSC
T ss_pred EEEECccc
Confidence 77766543
No 216
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=5.3e-17 Score=116.81 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=65.4
Q ss_pred CceEEEeCCCCCc------CHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC-Cc
Q 015468 73 IRSLWIGDLQPWM------EESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST-EQ 145 (406)
Q Consensus 73 ~~~l~V~nLp~~~------t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~-~~ 145 (406)
+++|||+|||.++ ++++|+++|+.||.|.+|++++ .+|+++|||||+|.+.++|.+|++.|||..+.++ .+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 7899999999999999999883 6788999999999999999999999999999875 44
Q ss_pred c
Q 015468 146 N 146 (406)
Q Consensus 146 ~ 146 (406)
.
T Consensus 79 ~ 79 (81)
T 2krb_A 79 R 79 (81)
T ss_dssp C
T ss_pred E
Confidence 3
No 217
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=6.6e-17 Score=118.68 Aligned_cols=79 Identities=14% Similarity=0.316 Sum_probs=71.4
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecc
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~ 151 (406)
..++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|++|+ .|++..+.+ +.+++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g--~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG--RQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT--EECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC--cEEEEEE
Confidence 3589999999999999999999999999999999999889999999999999999999999 899999965 4555555
Q ss_pred cc
Q 015468 152 AT 153 (406)
Q Consensus 152 ~~ 153 (406)
+.
T Consensus 82 a~ 83 (89)
T 3ucg_A 82 KR 83 (89)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 218
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=8.5e-17 Score=120.14 Aligned_cols=80 Identities=23% Similarity=0.506 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCccCcHHHHH----hhhccCCceEEEEeeC---CCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 271 DPNNTTIFVGGLDPSVTDDILK----TVFGQYGELVHVKIPA---GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~G~v~~v~i~~---~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
..++++|||+|||.++++++|+ ++|+.||.|.+|.+.+ .+++|||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999 9999999999999973 48999999999999999999999999999999999
Q ss_pred eccCCCC
Q 015468 344 WGRSPSN 350 (406)
Q Consensus 344 ~~~~~~~ 350 (406)
|++++..
T Consensus 85 ~a~~~~~ 91 (97)
T 1nu4_A 85 YAKTDSD 91 (97)
T ss_dssp ECSSCCT
T ss_pred EccCCCc
Confidence 9998653
No 219
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=117.44 Aligned_cols=77 Identities=23% Similarity=0.290 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeec
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWG 345 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 345 (406)
....++|||+|||.++++++|+++|+.| .|.+|.|+++ +|+|||+|.+.++|.+|+. ||+..|+|+.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4456899999999999999999999999 9999999765 6899999999999999999 9999999999999999
Q ss_pred cCCC
Q 015468 346 RSPS 349 (406)
Q Consensus 346 ~~~~ 349 (406)
+++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8764
No 220
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=5.2e-17 Score=126.02 Aligned_cols=83 Identities=28% Similarity=0.447 Sum_probs=78.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
....+.++|||+|||.++++++|+++|++ ||.|..|.++.++.+++++|||||+|.+.++|.+|++.||+..+.|+.|+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44566789999999999999999999998 99999999999988899999999999999999999999999999999999
Q ss_pred eCcC
Q 015468 241 IGPA 244 (406)
Q Consensus 241 v~~~ 244 (406)
|+++
T Consensus 114 V~~a 117 (118)
T 2khc_A 114 VQLK 117 (118)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9886
No 221
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.5e-16 Score=118.74 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=68.5
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeC---CCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA---GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~---~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
.....++|||+|||.++++++|+++|+.|+.|.-+.... .+++|||+|.+.++|.+||..||+..|+|+.|+|+|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 445678999999999999999999999886444333221 25899999999999999999999999999999999999
Q ss_pred CCCC
Q 015468 347 SPSN 350 (406)
Q Consensus 347 ~~~~ 350 (406)
++..
T Consensus 91 ~~~~ 94 (102)
T 2fc8_A 91 PKGE 94 (102)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8643
No 222
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.8e-16 Score=122.17 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=69.4
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcE-EEEEeCCHHHHHHHHHHhCCceeCC--ceeEEeeccCCCC
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRC-GFVQFANRTCAEQALSVLNGTQLGG--QSIRLSWGRSPSN 350 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~-afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~~ 350 (406)
..|||+||++.+++++|+++|+.||.|.+|.|....|+ |||+|++.++|.+|++.|||..|.| +.|+|++++++..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 44679999999999999999999999999998766686 9999999999999999999999987 6999999998753
No 223
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=2.9e-16 Score=122.88 Aligned_cols=87 Identities=31% Similarity=0.444 Sum_probs=80.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
......++|||+||+.++++++|+++|++ ||.|..|.+..+. +++++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34456779999999999999999999998 9999999999997 899999999999999999999999999999999999
Q ss_pred eCcCccccc
Q 015468 241 IGPAATKKA 249 (406)
Q Consensus 241 v~~~~~~~~ 249 (406)
|.++.....
T Consensus 108 V~~a~~~~~ 116 (124)
T 2kt5_A 108 IQLVASQID 116 (124)
T ss_dssp EEEECCTTC
T ss_pred EEEeCCCCC
Confidence 999877543
No 224
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=1.9e-17 Score=123.16 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=70.9
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|++|++.|++..|.++ .+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr--~l~v 89 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR--KVKL 89 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc--EEEE
Confidence 34468999999999999999999999999999999999988999999999999999999999999999999764 4444
Q ss_pred ccc
Q 015468 150 NWA 152 (406)
Q Consensus 150 ~~~ 152 (406)
.++
T Consensus 90 ~~a 92 (95)
T 2ek1_A 90 SGP 92 (95)
T ss_dssp ECC
T ss_pred Eec
Confidence 443
No 225
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.3e-17 Score=121.82 Aligned_cols=86 Identities=24% Similarity=0.505 Sum_probs=79.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTT-GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
...+.++|||+|||+++++++|+++|+. || |..|.|+.+..+ ++++|||||+|.+.++|.+|+ .|++..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTT-SC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHH-CC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3455679999999999999999999998 99 999999999877 999999999999999999999 9999999999999
Q ss_pred eCcCcccccc
Q 015468 241 IGPAATKKAA 250 (406)
Q Consensus 241 v~~~~~~~~~ 250 (406)
|.++.++...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999886544
No 226
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-17 Score=119.32 Aligned_cols=81 Identities=22% Similarity=0.395 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCc
Q 015468 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 243 (406)
.+.++|||+|||.++++++|+++|++ ||.|..+.++.+..+++++|||||+|.+.++|.+|++.||+..+.|+.|++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTT-TSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35669999999999999999999998 99999999999988999999999999999999999999999999999999887
Q ss_pred Cc
Q 015468 244 AA 245 (406)
Q Consensus 244 ~~ 245 (406)
..
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 227
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.6e-17 Score=121.80 Aligned_cols=86 Identities=33% Similarity=0.576 Sum_probs=80.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++|||+|||.++++++|+++|++ ||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3468999999999999999999998 999999999999889999999999999999999999999999999999999999
Q ss_pred ccccccc
Q 015468 245 ATKKAAT 251 (406)
Q Consensus 245 ~~~~~~~ 251 (406)
..+....
T Consensus 86 ~~~~~~~ 92 (104)
T 1p1t_A 86 ASEKNKE 92 (104)
T ss_dssp TCTTHHH
T ss_pred CCccchh
Confidence 8866543
No 228
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=5.2e-17 Score=118.96 Aligned_cols=83 Identities=22% Similarity=0.379 Sum_probs=76.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCC-cceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCc
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGR-SKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 243 (406)
..++|||+|||.++++++|+++|++ ||.|..+.+..+..++. ++|+|||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3469999999999999999999998 99999999999876655 899999999999999999999999999999999999
Q ss_pred Ccccc
Q 015468 244 AATKK 248 (406)
Q Consensus 244 ~~~~~ 248 (406)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 229
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=119.44 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=69.2
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
.....++|||+|||+++++++|+++|+.||.| +|.|+.+ +++|||+|++.++|.+||+ +|+..|+++.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34556899999999999999999999999955 8888754 6799999999999999995 799999999999999
Q ss_pred ccCCC
Q 015468 345 GRSPS 349 (406)
Q Consensus 345 ~~~~~ 349 (406)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 88654
No 230
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=7.9e-17 Score=117.83 Aligned_cols=76 Identities=17% Similarity=0.301 Sum_probs=71.7
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
..++|||+|||.++++++|+++|+.| .|.+++|.+.+|+|||+|.+.++|.+|+..||+..++|+.|+|+++....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 45789999999999999999999999 99999998889999999999999999999999999999999999997654
No 231
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.69 E-value=1.3e-16 Score=116.49 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
...+.++|||+|||.++++++|+++|++ ||.|..+.++.++.+++++|+|||+|.+.++|.+|++ +++..+.|+.|+|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 4456679999999999999999999998 9999999999998899999999999999999999995 5788899999999
Q ss_pred CcC
Q 015468 242 GPA 244 (406)
Q Consensus 242 ~~~ 244 (406)
.++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 232
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=6.2e-17 Score=127.88 Aligned_cols=88 Identities=15% Similarity=0.302 Sum_probs=80.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc----cc
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG--AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV----LC 234 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~----~~ 234 (406)
......++|||+|||+++++++|+++|++ ||.|.. |+|++|+.+++++|||||+|.+. +|.+|++.|++. .+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 34456779999999999999999999998 999966 99999988999999999999999 999999999999 99
Q ss_pred CCcceEeCcCcccccc
Q 015468 235 STRPMRIGPAATKKAA 250 (406)
Q Consensus 235 ~g~~i~v~~~~~~~~~ 250 (406)
.|+.|+|.++.++...
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999876543
No 233
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.9e-17 Score=124.01 Aligned_cols=83 Identities=23% Similarity=0.448 Sum_probs=72.4
Q ss_pred CCCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 015468 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (406)
Q Consensus 67 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 146 (406)
.......++|||+|||.++++++|+++|+.||.|.+|+++.++ +.++|||||+|.+.++|++|++.|++..+.+ +.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g--~~ 98 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEG--RK 98 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETT--EE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECC--EE
Confidence 4445677899999999999999999999999999999999885 3489999999999999999999999999875 55
Q ss_pred ceecccc
Q 015468 147 FRLNWAT 153 (406)
Q Consensus 147 v~~~~~~ 153 (406)
+++.++.
T Consensus 99 l~V~~a~ 105 (109)
T 2err_A 99 IEVNNAT 105 (109)
T ss_dssp CEEEECC
T ss_pred EEEEECC
Confidence 5555554
No 234
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.7e-16 Score=117.97 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=72.2
Q ss_pred CCCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEE
Q 015468 269 ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRL 342 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 342 (406)
......++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|+. ++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34455688999999999999999999999999999999765 5799999999999999999 578999999999
Q ss_pred eeccCCCCC
Q 015468 343 SWGRSPSNK 351 (406)
Q Consensus 343 ~~~~~~~~~ 351 (406)
++++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999987554
No 235
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=1.2e-16 Score=117.31 Aligned_cols=80 Identities=24% Similarity=0.485 Sum_probs=76.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCc
Q 015468 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (406)
Q Consensus 166 ~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 245 (406)
.++|||+|||.++++++|+++|++ ||.|..+.+..+..+++++|+|||+|.+.++|.+|+ .+++..+.|+.|+|.++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 358999999999999999999998 999999999999889999999999999999999999 999999999999999987
Q ss_pred cc
Q 015468 246 TK 247 (406)
Q Consensus 246 ~~ 247 (406)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 236
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=4.9e-17 Score=115.19 Aligned_cols=72 Identities=19% Similarity=0.343 Sum_probs=66.4
Q ss_pred eEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 75 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
+|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++ +++..+.++.+.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v 72 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVEC 72 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEE
Confidence 59999999999999999999999999999999998899999999999999999999998 9999997654433
No 237
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=7.8e-17 Score=114.12 Aligned_cols=73 Identities=8% Similarity=0.155 Sum_probs=68.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCc
Q 015468 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (406)
Q Consensus 166 ~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 245 (406)
+..|+|+||++.+|+++|+++|.+ ||+|.++.+.. ++|||||+|.+.++|++|++.||+..+.|++|+|+++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q-~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQ-HGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHH-HSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHh-hCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 448999999999999999999998 99999999865 58999999999999999999999999999999999984
No 238
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=6.1e-17 Score=114.67 Aligned_cols=75 Identities=27% Similarity=0.411 Sum_probs=71.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 168 ~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
+|||+|||.++++++|+++|++ ||.|.++.++.+..+++++|+|||+|.+.++|++|++ +++..+.|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQ-FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999998 9999999999998889999999999999999999996 9999999999999875
No 239
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.4e-17 Score=116.12 Aligned_cols=73 Identities=26% Similarity=0.434 Sum_probs=66.7
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
++|||+|||+++++++|+++|+.||.|.+|.+++++.+|+++|||||+|.+.++|++|++.++ ..+.++.+.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEE
Confidence 479999999999999999999999999999999998899999999999999999999999888 7776544433
No 240
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=5.6e-17 Score=120.66 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=75.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++|||+|||+++++++|+++|++ ||.|..+.++.+..+++++|+|||+|.+.++|.+|++.||+..+.|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTT-SCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4579999999999999999999998 999999999998889999999999999999999999999999999999999987
Q ss_pred cc
Q 015468 245 AT 246 (406)
Q Consensus 245 ~~ 246 (406)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 241
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=123.26 Aligned_cols=77 Identities=19% Similarity=0.427 Sum_probs=71.7
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
..++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+||.. ++..|+|+.|+|++++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4588999999999999999999999999999999875 67999999999999999997 9999999999999999
Q ss_pred CCCC
Q 015468 347 SPSN 350 (406)
Q Consensus 347 ~~~~ 350 (406)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 8754
No 242
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=1.6e-16 Score=120.97 Aligned_cols=82 Identities=33% Similarity=0.464 Sum_probs=77.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
...+.++|||+|||.++++++|+++|++ ||.|..|.++.+. +++++|+|||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4456779999999999999999999998 9999999999997 9999999999999999999999999999999999999
Q ss_pred CcCc
Q 015468 242 GPAA 245 (406)
Q Consensus 242 ~~~~ 245 (406)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9864
No 243
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.68 E-value=1e-17 Score=158.61 Aligned_cols=86 Identities=20% Similarity=0.405 Sum_probs=80.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
..+.++|||+||++.+|+++|.++|+. ||.|..|.|+.+..+++++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345679999999999999999999998 9999999999998899999999999999999999999999999999999999
Q ss_pred cCccccc
Q 015468 243 PAATKKA 249 (406)
Q Consensus 243 ~~~~~~~ 249 (406)
++.....
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9986543
No 244
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.8e-16 Score=116.47 Aligned_cols=78 Identities=22% Similarity=0.343 Sum_probs=68.2
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCc-EEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCCC
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKR-CGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNK 351 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~-~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 351 (406)
..++|||+|||.++++++|+++|+.||.|.+|.+.+..+ +|||+|.+.++|.+|+. |++..|+|+.|+|+++..+...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCCC
Confidence 457899999999999999999999999999984333222 99999999999999999 9999999999999998765443
No 245
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=7.6e-17 Score=122.88 Aligned_cols=87 Identities=25% Similarity=0.383 Sum_probs=76.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
......++|||+||+.++++++|+++|+. ||.|..|.++.+..+++++|||||+|.+.++|.+|++.+ +..+.|+.|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 44556779999999999999999999998 999999999999888999999999999999999999876 5999999999
Q ss_pred eCcCccccc
Q 015468 241 IGPAATKKA 249 (406)
Q Consensus 241 v~~~~~~~~ 249 (406)
|.++.++..
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999887654
No 246
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=119.87 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCccC------cHHHHHhhhccCCceEEEEeeC----CCcEEEEEeCCHHHHHHHHHHhCCceeCCc-e
Q 015468 271 DPNNTTIFVGGLDPSV------TDDILKTVFGQYGELVHVKIPA----GKRCGFVQFANRTCAEQALSVLNGTQLGGQ-S 339 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~------~~~~l~~~f~~~G~v~~v~i~~----~~~~afV~f~~~~~a~~a~~~l~~~~~~g~-~ 339 (406)
....++|||+|||..+ ++++|+++|+.||.|.+|.|++ .+|+|||+|.+.++|.+|+..|||..|+|+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3446899999999999 7899999999999999999984 379999999999999999999999999998 9
Q ss_pred eEEeeccCCC
Q 015468 340 IRLSWGRSPS 349 (406)
Q Consensus 340 l~v~~~~~~~ 349 (406)
|+|+++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999998654
No 247
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.4e-16 Score=118.39 Aligned_cols=83 Identities=17% Similarity=0.309 Sum_probs=71.5
Q ss_pred CCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 68 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
......++|||+|||+++|+++|+++|+.||.|.+|+|..+ +++++||||+|.+.++|++|++.|++..|.+ +.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l 91 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG--YRL 91 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETT--EEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECC--eEE
Confidence 44566789999999999999999999999999999999654 4579999999999999999999999999865 566
Q ss_pred eecccccC
Q 015468 148 RLNWATYG 155 (406)
Q Consensus 148 ~~~~~~~~ 155 (406)
++.++...
T Consensus 92 ~V~~a~~~ 99 (109)
T 1x4a_A 92 RVEFPRSG 99 (109)
T ss_dssp EEECCCCC
T ss_pred EEEEcccC
Confidence 66666543
No 248
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-16 Score=121.95 Aligned_cols=82 Identities=24% Similarity=0.499 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCce----EEEEeeC--CCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGEL----VHVKIPA--GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v----~~v~i~~--~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
...+++|||+|||.++++++|+++|+.||.| ..+++.. .+++|||+|.+.++|.+|+..|++..|+|+.|+|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4466899999999999999999999999998 5566554 379999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 015468 345 GRSPSNKQ 352 (406)
Q Consensus 345 ~~~~~~~~ 352 (406)
++++..+.
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 99875543
No 249
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=116.26 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
....++|||+|||+++++++|+++|+. | .|..+.++.+ .+++++|+|||+|.+.++|.+|++ +++..+.|+.|+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~-~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAP-L-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTT-S-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhh-C-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 345679999999999999999999998 8 9999999999 789999999999999999999999 99999999999999
Q ss_pred cCcccc
Q 015468 243 PAATKK 248 (406)
Q Consensus 243 ~~~~~~ 248 (406)
++..+.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 987753
No 250
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-16 Score=119.34 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=69.8
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeE-EEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVS-GKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~-~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
....++|||+|||+++|+++|+++|+.||.|.+ |+|+.+ .+|+++|||||+|.+.++|.+|++. ++..|.++ .|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr--~i~ 87 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR--YIE 87 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS--CCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc--EEE
Confidence 355689999999999999999999999999987 888888 7899999999999999999999996 88888765 455
Q ss_pred ecccc
Q 015468 149 LNWAT 153 (406)
Q Consensus 149 ~~~~~ 153 (406)
+.++.
T Consensus 88 v~~~~ 92 (104)
T 1wg5_A 88 IFKSS 92 (104)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 55444
No 251
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=2.9e-16 Score=122.83 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=74.9
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|.+|++.|++..+.+ +.++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG--RPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSS--CEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECC--cEEE
Confidence 45677899999999999999999999999999999999997 89999999999999999999999999999865 5566
Q ss_pred eccccc
Q 015468 149 LNWATY 154 (406)
Q Consensus 149 ~~~~~~ 154 (406)
+.++..
T Consensus 108 V~~a~~ 113 (124)
T 2kt5_A 108 IQLVAS 113 (124)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 666654
No 252
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=2e-16 Score=129.11 Aligned_cols=86 Identities=22% Similarity=0.258 Sum_probs=80.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
...+.++|||+|||.++++++|+++|++ ||.|..|.|+.+..+++++|||||+|.+.++|++|++.|++..|.++.|+|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3446679999999999999999999998 999999999999889999999999999999999999999999999999999
Q ss_pred CcCcccc
Q 015468 242 GPAATKK 248 (406)
Q Consensus 242 ~~~~~~~ 248 (406)
+++.+..
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9997654
No 253
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=1.3e-16 Score=124.95 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=70.5
Q ss_pred CceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccC
Q 015468 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347 (406)
Q Consensus 274 ~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 347 (406)
.++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|+ .||+..|+|+.|+|+++++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 478999999999999999999999999999999754 789999999999999999 7999999999999999987
Q ss_pred CCC
Q 015468 348 PSN 350 (406)
Q Consensus 348 ~~~ 350 (406)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 254
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=120.83 Aligned_cols=86 Identities=10% Similarity=0.179 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhhCCC-ccEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHHHHhc--CcccCCcce
Q 015468 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSS-VKGAKVV-TDRTTGRSKGYGFVRFGDESEQLRSMTEMN--GVLCSTRPM 239 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~-i~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--g~~~~g~~i 239 (406)
.+.++|||+|||.++++++|+++|++ ||. |..+.++ .+..+++++|||||+|.+.++|.+|++.|+ +..+.|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAK-VTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHH-HSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 45679999999999999999999998 998 9999998 777788999999999999999999999996 589999999
Q ss_pred EeCcCcccccc
Q 015468 240 RIGPAATKKAA 250 (406)
Q Consensus 240 ~v~~~~~~~~~ 250 (406)
+|.++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876543
No 255
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=1.9e-16 Score=122.41 Aligned_cols=77 Identities=22% Similarity=0.379 Sum_probs=70.1
Q ss_pred CceEEEcCCCccCcHHHHHhhhccCCceEEEEeeC-CCcE-EEEEeCCHHHHHHHHHHhCCceeCC--ceeEEeeccCCC
Q 015468 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA-GKRC-GFVQFANRTCAEQALSVLNGTQLGG--QSIRLSWGRSPS 349 (406)
Q Consensus 274 ~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~-~~~~-afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~ 349 (406)
...|||+||++.+|+++|+++|++||.|.+|.|.. .+++ |||+|.+.++|.+|++.|||..|.| +.|+|+|++...
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 35678999999999999999999999999998865 4677 9999999999999999999999988 899999999875
Q ss_pred C
Q 015468 350 N 350 (406)
Q Consensus 350 ~ 350 (406)
.
T Consensus 108 l 108 (130)
T 3zzy_A 108 L 108 (130)
T ss_dssp C
T ss_pred e
Confidence 3
No 256
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=113.05 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=66.1
Q ss_pred ceEEEcCCCccCcHHH----HHhhhccC-CceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCC
Q 015468 275 TTIFVGGLDPSVTDDI----LKTVFGQY-GELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 349 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~----l~~~f~~~-G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 349 (406)
+.|||+|||+.+++++ |+++|+.| |+|.+|. .|+|||+|.+.++|.+|++.|+|..+.||.|+|++|+.++
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 4499999999999988 55899999 5999983 3999999999999999999999999999999999999876
Q ss_pred CC
Q 015468 350 NK 351 (406)
Q Consensus 350 ~~ 351 (406)
.-
T Consensus 86 d~ 87 (96)
T 2diu_A 86 EL 87 (96)
T ss_dssp CC
T ss_pred ce
Confidence 54
No 257
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.9e-16 Score=117.31 Aligned_cols=88 Identities=26% Similarity=0.349 Sum_probs=79.5
Q ss_pred cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 015468 160 RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (406)
Q Consensus 160 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i 239 (406)
.....+.++|||+|||+++++++|+++|+. ||.|..|.++.+..+++++|||||+|.+.++|.+|++ ++..+.|+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 344556679999999999999999999998 9999999999998899999999999999999999998 4788999999
Q ss_pred EeCcCcccccc
Q 015468 240 RIGPAATKKAA 250 (406)
Q Consensus 240 ~v~~~~~~~~~ 250 (406)
.|.++.++...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cqg_A 86 DCKLPNSKQSQ 96 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEEecCCCCcC
Confidence 99999886543
No 258
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=116.88 Aligned_cols=78 Identities=19% Similarity=0.323 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCccCcHHHHHhhhccCCceEEE-EeeCCC--cEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 272 PNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV-KIPAGK--RCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 272 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v-~i~~~~--~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
...++|||+|||..+++++|+++|+.||.|.+| .|+.++ +.|||+|.+.++|.+|+..||+..|+|+.|+|++++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 346889999999999999999999999999999 477653 45999999999999999999999999999999999987
Q ss_pred C
Q 015468 349 S 349 (406)
Q Consensus 349 ~ 349 (406)
.
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 259
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=126.67 Aligned_cols=83 Identities=19% Similarity=0.359 Sum_probs=74.0
Q ss_pred CCCCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 015468 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (406)
Q Consensus 67 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 146 (406)
.......++|||+|||.++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|++|++.|++..|.++ .
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~ 134 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR--T 134 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE--E
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE--E
Confidence 34456789999999999999999999999999999999999988999999999999999999999999999988754 4
Q ss_pred ceecc
Q 015468 147 FRLNW 151 (406)
Q Consensus 147 v~~~~ 151 (406)
+++.+
T Consensus 135 l~v~~ 139 (140)
T 2ku7_A 135 IRVNL 139 (140)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 44443
No 260
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.7e-17 Score=124.77 Aligned_cols=81 Identities=7% Similarity=0.054 Sum_probs=70.9
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCe-eEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEF-VSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v-~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
.+...++|||+|||+++|+++|+++|+.||.| .+|+|+.++ +|+++|||||+|.+.++|.+|++. ++..|.+ +.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g--r~i 86 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNG--REA 86 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETT--EEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCC--eEE
Confidence 45667899999999999999999999999999 889999997 899999999999999999999986 8888865 445
Q ss_pred eecccc
Q 015468 148 RLNWAT 153 (406)
Q Consensus 148 ~~~~~~ 153 (406)
.+.++.
T Consensus 87 ~v~~a~ 92 (114)
T 2cpy_A 87 FVHVVT 92 (114)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 555443
No 261
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=9e-17 Score=114.47 Aligned_cols=76 Identities=28% Similarity=0.423 Sum_probs=72.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 167 ~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
++|||+|||.++++++|+++|++ ||.|..+.+..++.+++++|+|||+|.+.++|.+|++.++ ..+.|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTT-TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 37999999999999999999998 9999999999998889999999999999999999999999 9999999999876
No 262
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=3.5e-16 Score=121.82 Aligned_cols=80 Identities=13% Similarity=0.308 Sum_probs=68.5
Q ss_pred CCCCceEEEeCCCCCcCHHHHH----HHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 015468 70 SDGIRSLWIGDLQPWMEESYIA----SIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 145 (406)
...+++|||+|||+++++++|+ ++|+.||.|.+|.+.+ +++++|||||+|.+.++|..|++.|||..|.++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr-- 100 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN-- 100 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC--
Confidence 3446899999999999999876 6999999999988754 577899999999999999999999999999764
Q ss_pred cceeccccc
Q 015468 146 NFRLNWATY 154 (406)
Q Consensus 146 ~v~~~~~~~ 154 (406)
.++|.|+..
T Consensus 101 ~l~V~~a~~ 109 (127)
T 2a3j_A 101 PLVITFSET 109 (127)
T ss_dssp CCEEEECCC
T ss_pred EEEEEEccC
Confidence 566666653
No 263
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.9e-16 Score=119.70 Aligned_cols=85 Identities=18% Similarity=0.408 Sum_probs=76.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc------
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC------ 234 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~------ 234 (406)
......++|||+|||.++++++|+++|+. ||.|..+.++.+. +++++|||||+|.+.++|.+|++.||+..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKP-FGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 34456679999999999999999999998 9999999999997 899999999999999999999999999999
Q ss_pred --CCcceEeCcCccc
Q 015468 235 --STRPMRIGPAATK 247 (406)
Q Consensus 235 --~g~~i~v~~~~~~ 247 (406)
.++.|.|.|+.++
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5677888887754
No 264
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=1.8e-16 Score=127.30 Aligned_cols=76 Identities=22% Similarity=0.366 Sum_probs=69.9
Q ss_pred CceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC--CcEEEEEeCCHHHHHHHHHHhCCceeCC--ceeEEeeccCCC
Q 015468 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG--KRCGFVQFANRTCAEQALSVLNGTQLGG--QSIRLSWGRSPS 349 (406)
Q Consensus 274 ~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~--~~~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~ 349 (406)
..+|||+||++.+++++|+++|++||.|++|.|... +++|||+|++.++|.+|++.|||..|.| +.|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 467899999999999999999999999999998643 6799999999999999999999999965 999999999874
No 265
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=5.5e-17 Score=119.35 Aligned_cols=77 Identities=19% Similarity=0.448 Sum_probs=69.8
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecccc
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~ 153 (406)
++|||+|||.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.+ |.+|+..|++..+.++ .+++.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~--~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR--TIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS--SCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe--EEEEEEcC
Confidence 68999999999999999999999999999999999888999999999999999 9999999999999764 55555554
No 266
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=117.35 Aligned_cols=80 Identities=11% Similarity=0.166 Sum_probs=74.1
Q ss_pred CCceEEEcCCCCCCCHHHHH----HHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 165 PDFTIFVGDLAADVTDYVLQ----ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~----~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
..++|||+|||+++++++|+ ++|++ ||.|.+|.++.+..+ +|||||+|.+.++|.+|++.||+..+.|+.|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~-~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFAR-HGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccc-cCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 45699999999999999999 99998 999999999988654 88999999999999999999999999999999
Q ss_pred eCcCcccc
Q 015468 241 IGPAATKK 248 (406)
Q Consensus 241 v~~~~~~~ 248 (406)
|+++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997654
No 267
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=7e-16 Score=115.06 Aligned_cols=80 Identities=20% Similarity=0.449 Sum_probs=70.1
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
...+++|||+|||+++++++|+++|+.||.|.+|++.++ ++||||+|.+.++|++|++.|++..+.+....+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 445689999999999999999999999999999998763 78999999999999999999999999744567777
Q ss_pred cccccC
Q 015468 150 NWATYG 155 (406)
Q Consensus 150 ~~~~~~ 155 (406)
.++...
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 777643
No 268
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=8.3e-17 Score=121.88 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=65.2
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 144 (406)
..+.++|||+|||+++|+++|+++|+.| .|.+|+|+.++. |+++|||||+|.+.++|++|+ .+++..|.++.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~ 84 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRY 84 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 4456899999999999999999999999 899999999964 999999999999999999999 59998887643
No 269
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=9.8e-17 Score=138.89 Aligned_cols=80 Identities=16% Similarity=0.322 Sum_probs=70.7
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccC--CeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTG--EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
...++|||+|||+++|+++|+++|+.|| .|.+|+|++++.+++++|||||+|.+.++|++||+.|++..|.++ .|+
T Consensus 66 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr--~l~ 143 (229)
T 3q2s_C 66 GKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ--NPV 143 (229)
T ss_dssp ---CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB--CCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE--EeE
Confidence 3677999999999999999999999999 999999999999999999999999999999999999999999764 444
Q ss_pred eccc
Q 015468 149 LNWA 152 (406)
Q Consensus 149 ~~~~ 152 (406)
|.++
T Consensus 144 V~~a 147 (229)
T 3q2s_C 144 VTPV 147 (229)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 4443
No 270
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=6.9e-17 Score=121.58 Aligned_cols=76 Identities=18% Similarity=0.407 Sum_probs=67.1
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....++|||+|||.++++++|+++|+.||.|.+|++.+ ++|||||+|.+.++|.+|++.|++..+.+ +.+++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V 95 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQG--RNLRT 95 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETT--EECCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECC--eEEEE
Confidence 34468999999999999999999999999999999983 68999999999999999999999999865 55666
Q ss_pred cccc
Q 015468 150 NWAT 153 (406)
Q Consensus 150 ~~~~ 153 (406)
.|+.
T Consensus 96 ~~a~ 99 (101)
T 2la4_A 96 GWGK 99 (101)
T ss_dssp CBCC
T ss_pred Eecc
Confidence 6654
No 271
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=3.9e-16 Score=125.40 Aligned_cols=82 Identities=9% Similarity=0.197 Sum_probs=72.5
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
....+|||+||++++|+++|+++|++||.|.+|+|.... +++||||+|.+.++|++|++.|+|..|.+..+.+++.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 445679999999999999999999999999999997643 5789999999999999999999999997766788888
Q ss_pred ccccCC
Q 015468 151 WATYGA 156 (406)
Q Consensus 151 ~~~~~~ 156 (406)
|+....
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 887653
No 272
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=121.53 Aligned_cols=77 Identities=13% Similarity=0.065 Sum_probs=69.0
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCC---eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGE---FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 145 (406)
.....++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++|++ +++..|.++.+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3566789999999999999999999999988 89999999976 9999999999999999999999 99988866544
Q ss_pred cc
Q 015468 146 NF 147 (406)
Q Consensus 146 ~v 147 (406)
.|
T Consensus 85 ~V 86 (107)
T 2lmi_A 85 EV 86 (107)
T ss_dssp CC
T ss_pred EE
Confidence 33
No 273
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=9.2e-17 Score=126.61 Aligned_cols=79 Identities=10% Similarity=0.023 Sum_probs=70.1
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCC---eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGE---FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 145 (406)
.....++|||+|||+++|+++|+++|+.||. |.+|+|++++. |+++|||||+|.+.++|++|++ +++..|.++
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr-- 115 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR-- 115 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE--
Confidence 3456789999999999999999999999999 89999999976 9999999999999999999999 999988754
Q ss_pred cceecc
Q 015468 146 NFRLNW 151 (406)
Q Consensus 146 ~v~~~~ 151 (406)
.|++.+
T Consensus 116 ~i~V~~ 121 (136)
T 2hgl_A 116 YIEVFK 121 (136)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444443
No 274
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=1.4e-16 Score=125.48 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=76.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCC---ccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSS---VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 238 (406)
.....++|||+|||+++|+++|+++|++ ||. |.+|.|+.++. ++++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 3345679999999999999999999998 999 89999999976 9999999999999999999998 9999999999
Q ss_pred eEeCcCcccc
Q 015468 239 MRIGPAATKK 248 (406)
Q Consensus 239 i~v~~~~~~~ 248 (406)
|+|.++..+.
T Consensus 117 i~V~~a~~~e 126 (136)
T 2hgl_A 117 IEVFKSHRTE 126 (136)
T ss_dssp EEEEECCHHH
T ss_pred EEEEECChHH
Confidence 9999986654
No 275
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=9.4e-17 Score=124.19 Aligned_cols=78 Identities=10% Similarity=0.039 Sum_probs=69.4
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCC---eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcc
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGE---FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 146 (406)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++|++ +++..|.++ .
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr--~ 89 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHR--Y 89 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE--E
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe--E
Confidence 456789999999999999999999999999 89999999976 9999999999999999999999 999888654 4
Q ss_pred ceecc
Q 015468 147 FRLNW 151 (406)
Q Consensus 147 v~~~~ 151 (406)
|++.+
T Consensus 90 i~V~~ 94 (118)
T 2db1_A 90 IEVFK 94 (118)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
No 276
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=121.07 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=77.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH---HHHHhhCCCccEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQ---ETFRAVYSSVKGAKVVTDRTTG---RSKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~---~~f~~~~g~i~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 235 (406)
.....++|||+|||+++++++|+ ++|++ ||.|..|.+..+..++ +++|||||+|.+.++|.+|++.||+..+.
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGK-FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTT-TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhc-cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 33456699999999999999999 99998 9999999999887643 56699999999999999999999999999
Q ss_pred CcceEeCcCcccc
Q 015468 236 TRPMRIGPAATKK 248 (406)
Q Consensus 236 g~~i~v~~~~~~~ 248 (406)
|+.|+|.++.++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998875
No 277
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=122.84 Aligned_cols=84 Identities=21% Similarity=0.372 Sum_probs=78.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++|||+|||.++++++|+++|+. ||.|..|.++.+..+++++|||||+|.+.++|.+|++. ++..|.|+.|+|.++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4579999999999999999999998 99999999999988999999999999999999999977 999999999999999
Q ss_pred cccccc
Q 015468 245 ATKKAA 250 (406)
Q Consensus 245 ~~~~~~ 250 (406)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 887544
No 278
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=5.6e-17 Score=119.30 Aligned_cols=81 Identities=30% Similarity=0.508 Sum_probs=73.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCcc
Q 015468 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (406)
Q Consensus 167 ~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 246 (406)
++|||+|||.++++++|+++|++ ||.|.++.+..+..+++++|+|||+|.+.+ |.+|++.|++..+.|+.|+|+++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-FGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-HTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-cCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 48999999999999999999998 999999999999888999999999999999 9999999999999999999999887
Q ss_pred ccc
Q 015468 247 KKA 249 (406)
Q Consensus 247 ~~~ 249 (406)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 279
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=6.9e-18 Score=130.51 Aligned_cols=79 Identities=27% Similarity=0.463 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCccCcHHHHHhhhccCCceEE--------EEeeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 015468 272 PNNTTIFVGGLDPSVTDDILKTVFGQYGELVH--------VKIPAG------KRCGFVQFANRTCAEQALSVLNGTQLGG 337 (406)
Q Consensus 272 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~--------v~i~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g 337 (406)
...++|||+|||.++++++|+++|+.||.|.+ |.|+.+ +++|||+|.+.++|.+|+..||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45688999999999999999999999999998 777754 6899999999999999999999999999
Q ss_pred ceeEEeeccCCCC
Q 015468 338 QSIRLSWGRSPSN 350 (406)
Q Consensus 338 ~~l~v~~~~~~~~ 350 (406)
+.|+|++++++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999997643
No 280
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=112.18 Aligned_cols=76 Identities=25% Similarity=0.456 Sum_probs=66.9
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
+...++|||+|||+++++++|+++|+.||.|.+|+++ ++||||+|.+.++|++|++.|++..+.+ +.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v 74 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHG--VNINV 74 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSS--CBCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCC--cEEEE
Confidence 4567899999999999999999999999999999987 5799999999999999999999999865 55666
Q ss_pred cccccC
Q 015468 150 NWATYG 155 (406)
Q Consensus 150 ~~~~~~ 155 (406)
.++...
T Consensus 75 ~~a~~~ 80 (90)
T 2dnq_A 75 EASKNK 80 (90)
T ss_dssp ECSSCC
T ss_pred EECCCC
Confidence 665543
No 281
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=4.3e-16 Score=116.00 Aligned_cols=79 Identities=24% Similarity=0.353 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeC--CCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA--GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~--~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
....++|||+|||..+++++|+++|+.||.|..+ ... .+|+|||+|.+.++|.+|+..|++..|+|+.|+|++++++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 3456899999999999999999999999998877 222 3789999999999999999999999999999999999876
Q ss_pred CC
Q 015468 349 SN 350 (406)
Q Consensus 349 ~~ 350 (406)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 282
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=3.7e-16 Score=121.13 Aligned_cols=79 Identities=24% Similarity=0.519 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
....++|||+|| ++++++|+++|+.||.|.+|.|.+.+++|||+|.+.++|.+|+..||+..|+|+.|+|+|++++..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 345689999996 699999999999999999999999999999999999999999999999999999999999997654
Q ss_pred C
Q 015468 351 K 351 (406)
Q Consensus 351 ~ 351 (406)
.
T Consensus 114 ~ 114 (121)
T 2bz2_A 114 L 114 (121)
T ss_dssp -
T ss_pred C
Confidence 3
No 283
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.2e-16 Score=123.44 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=70.2
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....++|||+|||+++|+++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|++|++ |++..|.++ .|.|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr--~i~V 98 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR--FIQV 98 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS--CBEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc--EEEE
Confidence 4566899999999999999999999999999987777777899999999999999999999999 999999765 4444
Q ss_pred ccc
Q 015468 150 NWA 152 (406)
Q Consensus 150 ~~~ 152 (406)
.++
T Consensus 99 ~~a 101 (124)
T 1wel_A 99 HPI 101 (124)
T ss_dssp EEE
T ss_pred EEC
Confidence 443
No 284
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.65 E-value=8.4e-17 Score=120.74 Aligned_cols=82 Identities=27% Similarity=0.532 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDR-TTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
....++|||+||+.++++++|+++|++ || |.++.++.+. .+++++|||||+|.+.++|.+|+ .|++..+.|+.|+|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCS-SC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 445679999999999999999999998 99 9999999987 58999999999999999999999 99999999999999
Q ss_pred CcCccc
Q 015468 242 GPAATK 247 (406)
Q Consensus 242 ~~~~~~ 247 (406)
.++.++
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998765
No 285
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=5.2e-17 Score=128.43 Aligned_cols=124 Identities=13% Similarity=0.094 Sum_probs=74.3
Q ss_pred ceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceecccccCCCCCcCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCcc
Q 015468 116 GYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVK 195 (406)
Q Consensus 116 g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~ 195 (406)
++||.+|.-++.+..++....... .+... ................++|||+|||+++++++|+++|++ || |.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-gg~~~-----g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~-~G-i~ 73 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMT-GGQQM-----GRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSP-LN-PV 73 (139)
T ss_dssp -------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCS-CC-CS
T ss_pred CcccccccCccccchhcccchhcc-CCCCC-----CCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cC-Ce
Confidence 567888887777777766544321 11111 000011111233445679999999999999999999998 99 77
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccccc
Q 015468 196 GAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249 (406)
Q Consensus 196 ~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~ 249 (406)
+|.|+.+.. ++++|||||+|.+.++|++|| .+++..+.++.|+|..+.....
T Consensus 74 ~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 74 RVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp EEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 999999965 999999999999999999999 8899999999999988876543
No 286
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=118.24 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG-AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
....++|||+|||+++++++|+++|++ ||.|.. |.|+.+ .+++++|||||+|.+.++|.+|++. ++..+.++.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSG-LEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTT-CCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 345679999999999999999999998 999987 888888 7899999999999999999999987 999999999999
Q ss_pred CcCcccc
Q 015468 242 GPAATKK 248 (406)
Q Consensus 242 ~~~~~~~ 248 (406)
.++....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 8876544
No 287
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-16 Score=122.16 Aligned_cols=87 Identities=11% Similarity=0.172 Sum_probs=78.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCc-cEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV-KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
...+.++|||+|||+++++++|+++|+. ||.| ..|.|+.+. +++++|||||+|.+.++|.+|++. ++..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEG-IPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 3455679999999999999999999998 9999 899999997 999999999999999999999976 99999999999
Q ss_pred eCcCccccccc
Q 015468 241 IGPAATKKAAT 251 (406)
Q Consensus 241 v~~~~~~~~~~ 251 (406)
|.++..+....
T Consensus 88 v~~a~~~~~~~ 98 (114)
T 2cpy_A 88 VHVVTLEDMRE 98 (114)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHH
Confidence 99988765443
No 288
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.6e-16 Score=124.18 Aligned_cols=85 Identities=16% Similarity=0.349 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
....++|||+|||+++++++|+++|+. ||.|..+.++.+..+++++|||||+|.+.++|.+||+ +++..|.|+.|.|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 445679999999999999999999998 9999987777776799999999999999999999998 99999999999999
Q ss_pred cCccccc
Q 015468 243 PAATKKA 249 (406)
Q Consensus 243 ~~~~~~~ 249 (406)
++..+..
T Consensus 100 ~a~~~~~ 106 (124)
T 1wel_A 100 PITKKGM 106 (124)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9877543
No 289
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=2.7e-16 Score=121.63 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCC---ccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSS---VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i 239 (406)
....++|||+|||+++++++|+++|+. ||. |..|+|+.+.. ++++|||||+|.+.++|++|++ +++..|.|+.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 345679999999999999999999998 999 89999999975 9999999999999999999997 99999999999
Q ss_pred EeCcCcccc
Q 015468 240 RIGPAATKK 248 (406)
Q Consensus 240 ~v~~~~~~~ 248 (406)
+|.++..+.
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999987654
No 290
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=123.22 Aligned_cols=84 Identities=24% Similarity=0.382 Sum_probs=78.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++|||+||+.++++++|+++|+. ||.|..|.++.+..+++++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 3569999999999999999999998 999999999999888999999999999999999999 99999999999999998
Q ss_pred cccccc
Q 015468 245 ATKKAA 250 (406)
Q Consensus 245 ~~~~~~ 250 (406)
..+...
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 776543
No 291
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=3.5e-16 Score=114.22 Aligned_cols=71 Identities=23% Similarity=0.484 Sum_probs=67.7
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccC----C-------ceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeE
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQY----G-------ELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIR 341 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~----G-------~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 341 (406)
..++|||+|||.++++++|+++|+.| | .|.++.+.+++++|||+|.+.++|.+|+ .||+..++|+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 45889999999999999999999999 8 9999999999999999999999999999 9999999999999
Q ss_pred Eee
Q 015468 342 LSW 344 (406)
Q Consensus 342 v~~ 344 (406)
|+.
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 292
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=6.3e-16 Score=113.00 Aligned_cols=77 Identities=32% Similarity=0.551 Sum_probs=62.5
Q ss_pred CCCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-CcEEEEEeCCHHHHHHHHHHhCCce--eCCceeEEeecc
Q 015468 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-KRCGFVQFANRTCAEQALSVLNGTQ--LGGQSIRLSWGR 346 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-~~~afV~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~ 346 (406)
.....++|||+|||+++++++|+++|++||.|.+|+|+++ +|||||+|++.++|.+ |++.. +.|+.|.|++++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 3456689999999999999999999999999999999875 8999999999999873 55655 459999999998
Q ss_pred CCCC
Q 015468 347 SPSN 350 (406)
Q Consensus 347 ~~~~ 350 (406)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7643
No 293
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=118.06 Aligned_cols=84 Identities=17% Similarity=0.338 Sum_probs=75.5
Q ss_pred CCCCCceEEEcCCCCCC------CHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 015468 162 DDGPDFTIFVGDLAADV------TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~------~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 235 (406)
.....++|||+|||+.+ ++++|+++|++ ||.|..|.+. +.+|+++|||||+|.+.++|.+|++.||+..+.
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-GSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-CCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 33446799999999999 78999999998 9999999888 357899999999999999999999999999999
Q ss_pred Cc-ceEeCcCcccc
Q 015468 236 TR-PMRIGPAATKK 248 (406)
Q Consensus 236 g~-~i~v~~~~~~~ 248 (406)
|+ .|+|.++....
T Consensus 88 g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 88 KQHTFRVNLFTDFD 101 (105)
T ss_dssp TTCEEEEECSCCCC
T ss_pred CCceEEEEEcchHh
Confidence 99 99999987643
No 294
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.65 E-value=1.2e-16 Score=113.10 Aligned_cols=73 Identities=22% Similarity=0.385 Sum_probs=66.6
Q ss_pred eEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 75 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
+|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|.+|++ +++..+.++.+.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEE
Confidence 59999999999999999999999999999999998899999999999999999999998 58888876555543
No 295
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-15 Score=116.41 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=69.8
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCC---cc
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE---QN 146 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~---~~ 146 (406)
....++|||+|||+++|+++|+++|+.||.|.+|+|+.+ |||||+|.+.++|++|++.||+..|.+.. ..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 355789999999999999999999999999999999875 89999999999999999999999987622 66
Q ss_pred ceecccccCC
Q 015468 147 FRLNWATYGA 156 (406)
Q Consensus 147 v~~~~~~~~~ 156 (406)
|+|.++....
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 7777766543
No 296
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=5.5e-16 Score=124.15 Aligned_cols=84 Identities=24% Similarity=0.421 Sum_probs=77.9
Q ss_pred cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 015468 160 RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (406)
Q Consensus 160 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i 239 (406)
.....+.++|||+|||.++++++|+++|++ ||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344556789999999999999999999998 9999999999998899999999999999999999999999999999999
Q ss_pred EeCcC
Q 015468 240 RIGPA 244 (406)
Q Consensus 240 ~v~~~ 244 (406)
+|.++
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 297
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-15 Score=113.12 Aligned_cols=77 Identities=14% Similarity=0.238 Sum_probs=66.4
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....++|||+|||+++++++|+++|+.||.|. +.++.+ +++|||||+|.+.++|.+|++.|++..|.++ .+.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V 88 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD--TLRV 88 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSS--CCEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCc--EEEE
Confidence 45578999999999999999999999999996 677765 3799999999999999999999999999764 4555
Q ss_pred cccc
Q 015468 150 NWAT 153 (406)
Q Consensus 150 ~~~~ 153 (406)
.++.
T Consensus 89 ~~a~ 92 (97)
T 2e5j_A 89 ALAR 92 (97)
T ss_dssp EECC
T ss_pred EEcC
Confidence 5554
No 298
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.8e-16 Score=118.98 Aligned_cols=79 Identities=20% Similarity=0.439 Sum_probs=72.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCc
Q 015468 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (406)
Q Consensus 166 ~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 245 (406)
..+|||+|||+++++++|+++|+. | .|.+|.|+.++. |+++|||||+|.+.++|.+|+ .+++..+.||.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~-~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHG-L-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTT-S-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhcc-C-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 468999999999999999999998 8 899999999964 999999999999999999999 799999999999998876
Q ss_pred ccc
Q 015468 246 TKK 248 (406)
Q Consensus 246 ~~~ 248 (406)
.+.
T Consensus 92 ~~~ 94 (109)
T 2dnn_A 92 ERQ 94 (109)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 299
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.3e-16 Score=115.59 Aligned_cols=87 Identities=32% Similarity=0.471 Sum_probs=77.6
Q ss_pred cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 015468 160 RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (406)
Q Consensus 160 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i 239 (406)
.....+.++|||+|||.++++++|+++|+. | ..+.++.+..+++++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDG-S---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTT-C---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcC-C---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 344566789999999999999999999986 6 468888888889999999999999999999999999999999999
Q ss_pred EeCcCcccccc
Q 015468 240 RIGPAATKKAA 250 (406)
Q Consensus 240 ~v~~~~~~~~~ 250 (406)
+|.++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2fc8_A 85 TLDWAKPKGEG 95 (102)
T ss_dssp EEEECCCCCSS
T ss_pred EEEEecCCCCC
Confidence 99999886543
No 300
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.3e-16 Score=113.93 Aligned_cols=76 Identities=29% Similarity=0.503 Sum_probs=65.5
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCC
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN 350 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 350 (406)
.+++|||+|||.++++++|+++|+.||.|.+|.|+++ +++|||+|++.++|.+|+. ....+.|+.|+|++++++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCC
Confidence 4588999999999999999999999999999999876 8999999999999975432 23446899999999987654
No 301
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=112.86 Aligned_cols=73 Identities=15% Similarity=0.360 Sum_probs=67.4
Q ss_pred ceEEEcCCCCCC------CHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc-ce
Q 015468 167 FTIFVGDLAADV------TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR-PM 239 (406)
Q Consensus 167 ~~l~v~~l~~~~------~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~-~i 239 (406)
++|||+|||..+ ++++|+++|++ ||.|.++.+. +.+++++|||||+|.+.++|.+|++.||+..+.|+ .|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHT-TCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhh-cCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 589999999999 67999999998 9999999887 35789999999999999999999999999999999 88
Q ss_pred EeC
Q 015468 240 RIG 242 (406)
Q Consensus 240 ~v~ 242 (406)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 302
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=5.5e-16 Score=121.32 Aligned_cols=82 Identities=20% Similarity=0.442 Sum_probs=77.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++|||+|||.++++++|+++|++ ||.|.+|.++.+..+++++|||||+|.+.++|.+|+ .|++..+.|+.|+|.++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3569999999999999999999998 999999999999889999999999999999999999 89999999999999998
Q ss_pred cccc
Q 015468 245 ATKK 248 (406)
Q Consensus 245 ~~~~ 248 (406)
....
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7644
No 303
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-16 Score=119.98 Aligned_cols=84 Identities=15% Similarity=0.362 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
....++|||+|||.++++++|+++|++ ||.|.. .++.+..+++++|||||+|.+.++|.+|++ |++..+.|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISE-LFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHH-HHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 345679999999999999999999998 999988 566666678999999999999999999998 99999999999999
Q ss_pred cCccccc
Q 015468 243 PAATKKA 249 (406)
Q Consensus 243 ~~~~~~~ 249 (406)
++.++..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9987654
No 304
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.1e-16 Score=111.45 Aligned_cols=76 Identities=22% Similarity=0.407 Sum_probs=66.4
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHh-CCCCCCCCCccc
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF-NGTQMPSTEQNF 147 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l-~~~~~~~~~~~v 147 (406)
.+...++|||+|||.++++++|+++|+.||.|.+|++++ ++|||||+|.+.++|.+|++.| ++..+.+ ..+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g--~~l 79 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNG--RRL 79 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETT--EEC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECC--CEE
Confidence 345678999999999999999999999999999999997 4799999999999999999998 8888865 455
Q ss_pred eeccc
Q 015468 148 RLNWA 152 (406)
Q Consensus 148 ~~~~~ 152 (406)
++.|+
T Consensus 80 ~v~~a 84 (85)
T 2ytc_A 80 NVKWG 84 (85)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 55544
No 305
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.8e-16 Score=120.52 Aligned_cols=88 Identities=22% Similarity=0.355 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
..+.++|||+|||.++++++|+++|++ ||.|..+.+..+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 445679999999999999999999998 9999655443333378899999999999999999999999999999999999
Q ss_pred cCccccccc
Q 015468 243 PAATKKAAT 251 (406)
Q Consensus 243 ~~~~~~~~~ 251 (406)
++..+....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 998876443
No 306
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=6.4e-16 Score=119.71 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=65.5
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCee--EEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccc
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFV--SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v 147 (406)
....++|||+|||+++|+++|+++|+.| .|. +|+|+.++. |+++|||||+|.+.++|++|++ +++..|.++.+.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3456889999999999999999999999 577 999999976 9999999999999999999998 5778887654444
No 307
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=3.7e-15 Score=114.88 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=69.2
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccce-EEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGY-GFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
....|||+||++.+|+++|+++|+.||.|.+|+|+.. .|| |||+|.+.++|..|++.|+|..|.+....+++.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3445789999999999999999999999999999752 376 999999999999999999999998766788888
Q ss_pred ccccCC
Q 015468 151 WATYGA 156 (406)
Q Consensus 151 ~~~~~~ 156 (406)
++....
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 887554
No 308
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=113.66 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=74.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
....+.++|||+|||.++++++|+++|++ ||.|..+.+.++ +|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 34456679999999999999999999998 999999999854 78999999999999999999999999999999
Q ss_pred eCcCccccc
Q 015468 241 IGPAATKKA 249 (406)
Q Consensus 241 v~~~~~~~~ 249 (406)
|.++.++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpj_A 83 VRFACHSAS 91 (99)
T ss_dssp EEESSCCSC
T ss_pred EEEcCCCCC
Confidence 999987653
No 309
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=1.2e-15 Score=113.60 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=64.9
Q ss_pred CCCCceEEEeCCCC-CcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 70 SDGIRSLWIGDLQP-WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 70 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
...+++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|++..+.+ ..++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~ 88 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFG--KKLI 88 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETT--EECE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECC--EEEE
Confidence 44578999999998 99999999999999999999982 7899999999999999999999999865 4555
Q ss_pred ecccc
Q 015468 149 LNWAT 153 (406)
Q Consensus 149 ~~~~~ 153 (406)
+.++.
T Consensus 89 V~~a~ 93 (97)
T 2xnq_A 89 LEVSS 93 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 55554
No 310
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=119.40 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCC---ccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSS---VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i 239 (406)
....++|||+|||+++++++|+++|+. ||. |..|.|+.+.. |+++|+|||+|.+.++|.+|++ +++..+.|+.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 345669999999999999999999998 998 89999999976 9999999999999999999998 99999999999
Q ss_pred EeCcCcccc
Q 015468 240 RIGPAATKK 248 (406)
Q Consensus 240 ~v~~~~~~~ 248 (406)
+|.++..+.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999987654
No 311
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.63 E-value=3.1e-16 Score=111.01 Aligned_cols=75 Identities=24% Similarity=0.404 Sum_probs=70.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 168 ~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
+|||+|||.++++++|+++|++ ||.|.++.+..+..+++++|+|||+|.+.++|.+|++ +++..+.|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGG-FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHH-HSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999998 9999999999998889999999999999999999996 4889999999998764
No 312
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=9.2e-16 Score=118.63 Aligned_cols=82 Identities=9% Similarity=0.235 Sum_probs=72.1
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccce-EEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGY-GFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
+....+|||+||++.+|+++|+++|+.||.|.+|+++.. .+|+ |||+|.+.++|.+|++.|||..|.+....++
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 344567889999999999999999999999999999874 3677 9999999999999999999999987667888
Q ss_pred ecccccCC
Q 015468 149 LNWATYGA 156 (406)
Q Consensus 149 ~~~~~~~~ 156 (406)
+.++....
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 88887553
No 313
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=115.16 Aligned_cols=83 Identities=24% Similarity=0.397 Sum_probs=74.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
...+.++|||+|||.++++++|+++|++ ||.| .++.+ .+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEK-ATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSS-CSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 4556789999999999999999999998 9976 55565 67899999999999999999999999999999999999
Q ss_pred CcCccccc
Q 015468 242 GPAATKKA 249 (406)
Q Consensus 242 ~~~~~~~~ 249 (406)
.++.++..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99988654
No 314
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=113.78 Aligned_cols=79 Identities=22% Similarity=0.356 Sum_probs=69.3
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEEEEee------CCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEee
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP------AGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSW 344 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~------~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 344 (406)
....++|||+|||.++++++|+++|+.||.|.. .++ +.+++|||+|.+.++|.+|++ ||+..|.|+.|+|++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345689999999999999999999999998766 332 348999999999999999999 999999999999999
Q ss_pred ccCCCCC
Q 015468 345 GRSPSNK 351 (406)
Q Consensus 345 ~~~~~~~ 351 (406)
++++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9976543
No 315
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=9.1e-16 Score=131.83 Aligned_cols=81 Identities=26% Similarity=0.598 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCccC---------cHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCcee------
Q 015468 271 DPNNTTIFVGGLDPSV---------TDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQL------ 335 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~---------~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~------ 335 (406)
....++|||+||+..+ ++++|+++|+.||.|++|+|+.++|+|||+|.+.++|..|+.+|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 4567899999999998 7999999999999999999999999999999999999999999999999
Q ss_pred ------CCceeEEeeccCCCCC
Q 015468 336 ------GGQSIRLSWGRSPSNK 351 (406)
Q Consensus 336 ------~g~~l~v~~~~~~~~~ 351 (406)
.|+.|.|+||+.....
T Consensus 211 e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TGGGGGGSCCCEEEECC-----
T ss_pred cccccCCCCEEEEEEccCCCCH
Confidence 8999999999976543
No 316
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5.4e-16 Score=119.95 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCc----cEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSV----KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
...+|||+|||+++++++|+++|++ ||.| ..|.|+.+ .+|+++|||||+|.+.++|.+|++. ++..+.+|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~-~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQ-HCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHT-TSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-hCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3459999999999999999999998 9875 68999998 5899999999999999999999976 99999999999
Q ss_pred eCcCccccc
Q 015468 241 IGPAATKKA 249 (406)
Q Consensus 241 v~~~~~~~~ 249 (406)
|..+..+..
T Consensus 99 V~~a~~~e~ 107 (123)
T 2dha_A 99 LFRSTAAEV 107 (123)
T ss_dssp CEEECHHHH
T ss_pred EEECCHHHH
Confidence 988766543
No 317
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=8.2e-16 Score=116.59 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=70.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCC-CccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCc
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYS-SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 243 (406)
..++|||+|||+++++++|+++|++ || .|..+.+..+ +++|||||+|.+.++|++|++.||+..+.|+.|+|++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARE-NSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHH-HTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3569999999999999999999998 99 8999988533 4789999999999999999999999999999999999
Q ss_pred Cccc
Q 015468 244 AATK 247 (406)
Q Consensus 244 ~~~~ 247 (406)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8654
No 318
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4e-16 Score=120.67 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=64.2
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCe----eEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCC
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEF----VSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v----~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 143 (406)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.+ .+|+++|||||+|.+.++|++|++. ++..|.++
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 456899999999999999999999999975 68999998 5899999999999999999999985 88877654
No 319
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=1.7e-15 Score=125.59 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=73.5
Q ss_pred CCCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 69 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.++ +++++|||||+|.+.++|.+|++.|++..|.++ .++
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr--~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGR--PMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSS--BCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCE--EEE
Confidence 45667899999999999999999999999999999999997 899999999999999999999999999999764 455
Q ss_pred ecccc
Q 015468 149 LNWAT 153 (406)
Q Consensus 149 ~~~~~ 153 (406)
|.++.
T Consensus 161 V~~a~ 165 (177)
T 2f3j_A 161 IQLVA 165 (177)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 55544
No 320
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.6e-15 Score=111.63 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=63.5
Q ss_pred CCCCceEEEeCCCC-CcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccce
Q 015468 70 SDGIRSLWIGDLQP-WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (406)
Q Consensus 70 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~ 148 (406)
..+.++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|++..+.++.+.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999984 6899999999999999999999999976554444
Q ss_pred ec
Q 015468 149 LN 150 (406)
Q Consensus 149 ~~ 150 (406)
+.
T Consensus 79 ~a 80 (96)
T 2kvi_A 79 VS 80 (96)
T ss_dssp EE
T ss_pred Ec
Confidence 43
No 321
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=2e-15 Score=114.64 Aligned_cols=81 Identities=20% Similarity=0.447 Sum_probs=72.3
Q ss_pred cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 015468 160 RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (406)
Q Consensus 160 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i 239 (406)
.......++|||+||+.++++++|+++|++ ||.|..+.+. +|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 344566789999999999999999999998 9999999987 6899999999999999999999999999999
Q ss_pred EeCcCccccc
Q 015468 240 RIGPAATKKA 249 (406)
Q Consensus 240 ~v~~~~~~~~ 249 (406)
+|.++..+..
T Consensus 96 ~V~~a~~~~~ 105 (108)
T 2jvo_A 96 EVVYSKLPAK 105 (108)
T ss_dssp EEESCSCCC-
T ss_pred EEEEecCCCC
Confidence 9999987653
No 322
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.2e-15 Score=115.32 Aligned_cols=81 Identities=10% Similarity=0.183 Sum_probs=72.3
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCC----H-HH---HHHHHH--HhcCc
Q 015468 167 FTIFVGDL----AADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGD----E-SE---QLRSMT--EMNGV 232 (406)
Q Consensus 167 ~~l~v~~l----~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~----~-~~---a~~a~~--~l~g~ 232 (406)
..|||+|| ++.+++++|+++|+. ||+|.++.++.|+.||+++|||||+|.+ . ++ |.+|+. .+++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 48999999 999999999999998 9999999999999999999999999996 3 32 788888 78999
Q ss_pred ccCCcceEeCcCcccc
Q 015468 233 LCSTRPMRIGPAATKK 248 (406)
Q Consensus 233 ~~~g~~i~v~~~~~~~ 248 (406)
.|+|+.|+|.......
T Consensus 82 ~I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSI 97 (136)
T ss_dssp EETTEEEEEEECCTTH
T ss_pred eecCcEEEEEECcccH
Confidence 9999999999876543
No 323
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-15 Score=110.05 Aligned_cols=81 Identities=15% Similarity=0.359 Sum_probs=73.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
......++|||+|||.++++++|+++|++ ||.|..+.+.+ ++|||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34556779999999999999999999998 99999999874 3999999999999999999999999999999
Q ss_pred eCcCcccccc
Q 015468 241 IGPAATKKAA 250 (406)
Q Consensus 241 v~~~~~~~~~ 250 (406)
|.++.++...
T Consensus 76 V~~a~~~~~~ 85 (92)
T 2dgt_A 76 VQLSTSRLRT 85 (92)
T ss_dssp EEESSCCCSC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 324
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=114.48 Aligned_cols=81 Identities=21% Similarity=0.443 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
....++|||+|||.++++++|+++|++ ||.|..|.++.+ +|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHH-HSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345679999999999999999999998 999999999876 7899999999999999999999999999999999
Q ss_pred cCcccccc
Q 015468 243 PAATKKAA 250 (406)
Q Consensus 243 ~~~~~~~~ 250 (406)
++..+...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99886543
No 325
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=114.67 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=64.7
Q ss_pred CCCCceEEE--eCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCC---CCCC
Q 015468 70 SDGIRSLWI--GDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---PSTE 144 (406)
Q Consensus 70 ~~~~~~l~V--~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~---~~~~ 144 (406)
...+++||| +||++++++++|+++|++||.|.+|.++. .+|||||+|.+.++|++|++.|||+.+ .+..
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 445788999 66999999999999999999999998764 379999999999999999999999876 2234
Q ss_pred ccceecccc
Q 015468 145 QNFRLNWAT 153 (406)
Q Consensus 145 ~~v~~~~~~ 153 (406)
..+.+.++.
T Consensus 96 ~~l~v~~a~ 104 (114)
T 2cq2_A 96 ITLYLNFVE 104 (114)
T ss_dssp EECEEEEES
T ss_pred cEEEEEecc
Confidence 555555443
No 326
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=4.6e-16 Score=117.28 Aligned_cols=79 Identities=23% Similarity=0.466 Sum_probs=68.2
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
...+++|||+|||+++++++|+++|+.||.|.+|+++.++ +|+++|||||+|.+.++|++|++ ++..+.+. .+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~--~l~v 80 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK--KLKL 80 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTE--ECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCE--EEEE
Confidence 4456899999999999999999999999999999999997 89999999999999999999998 66666543 4444
Q ss_pred cccc
Q 015468 150 NWAT 153 (406)
Q Consensus 150 ~~~~ 153 (406)
.++.
T Consensus 81 ~~a~ 84 (102)
T 2xs2_A 81 GPAI 84 (102)
T ss_dssp EEEE
T ss_pred EECC
Confidence 4443
No 327
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=116.65 Aligned_cols=77 Identities=13% Similarity=0.175 Sum_probs=67.4
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
....++|||+|||+++++++|+++|+.||.|.+|.|++ +++||||+|.+.++|++|++.||+..|.+ +.+.+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V 78 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHH--VPLYL 78 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSS--SBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECC--eEEEE
Confidence 34568999999999999999999999999999999875 57899999999999999999999999975 45666
Q ss_pred ccccc
Q 015468 150 NWATY 154 (406)
Q Consensus 150 ~~~~~ 154 (406)
.|+..
T Consensus 79 ~~a~~ 83 (111)
T 1whx_A 79 EWAPI 83 (111)
T ss_dssp EEEET
T ss_pred EECCC
Confidence 66653
No 328
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=7.8e-16 Score=119.24 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCcc--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVK--GAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
....++|||+|||+++++++|+++|++ | .|. +|.|+.++. |+++|||||+|.+.++|++|++. ++..|.||.|+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~-~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSG-L-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTT-S-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhc-C-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 345668999999999999999999998 8 677 899999875 99999999999999999999974 77999999999
Q ss_pred eCcCccc
Q 015468 241 IGPAATK 247 (406)
Q Consensus 241 v~~~~~~ 247 (406)
|.++..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887654
No 329
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.60 E-value=5.4e-16 Score=117.27 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=68.3
Q ss_pred ceEEEeCC----CCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcC----HHH----HHHHHH--HhCCCC
Q 015468 74 RSLWIGDL----QPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS----HAA----AERVLQ--TFNGTQ 139 (406)
Q Consensus 74 ~~l~V~nL----p~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~----~~~----A~~A~~--~l~~~~ 139 (406)
..|||+|| |+++++++|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 333 788888 689999
Q ss_pred CCCCCccceecc
Q 015468 140 MPSTEQNFRLNW 151 (406)
Q Consensus 140 ~~~~~~~v~~~~ 151 (406)
|.++.+.|.++.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 988766666654
No 330
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=6.5e-17 Score=124.99 Aligned_cols=87 Identities=26% Similarity=0.376 Sum_probs=80.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG--------AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC 234 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 234 (406)
..+.++|||+|||.++++++|+++|++ ||.|.. |.++.++.+++++|||||+|.+.++|.+|++.|++..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 345679999999999999999999998 999998 88999888899999999999999999999999999999
Q ss_pred CCcceEeCcCcccccc
Q 015468 235 STRPMRIGPAATKKAA 250 (406)
Q Consensus 235 ~g~~i~v~~~~~~~~~ 250 (406)
.|+.|+|.++.++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999876544
No 331
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=116.01 Aligned_cols=65 Identities=23% Similarity=0.451 Sum_probs=59.8
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCC---CCccceEEEEEcCHHHHHHHHHHh
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT---NFSEGYGFIEFVSHAAAERVLQTF 135 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l 135 (406)
...+++|||+|||+++|+++|+++|+.||.|. +.++.+..+ |+++|||||+|.+.++|++|++.|
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 35578999999999999999999999999998 888887766 789999999999999999999988
No 332
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=5.4e-15 Score=111.48 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
..+.++|||+|||.++++++|+++|++ ||.|..|.++ ++||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQ-FGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHH-HSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 345679999999999999999999998 9999999886 4599999999999999999999999999999999
Q ss_pred cCccccccc
Q 015468 243 PAATKKAAT 251 (406)
Q Consensus 243 ~~~~~~~~~ 251 (406)
++.++....
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 998766544
No 333
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=4.7e-15 Score=113.30 Aligned_cols=79 Identities=25% Similarity=0.466 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 162 DDGPDFTIFVGDLAAD-VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
.....++|||+||+++ +++++|+++|++ ||.|..|.+ ++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445579999999999 999999999998 999999988 478999999999999999999999999999999
Q ss_pred eCcCccccc
Q 015468 241 IGPAATKKA 249 (406)
Q Consensus 241 v~~~~~~~~ 249 (406)
|.++.....
T Consensus 94 V~~a~~~~~ 102 (110)
T 1wf1_A 94 INMAGEPKP 102 (110)
T ss_dssp EEESCCCCS
T ss_pred EEECCCCCC
Confidence 999876443
No 334
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=4.1e-15 Score=123.29 Aligned_cols=86 Identities=31% Similarity=0.443 Sum_probs=79.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
.....++|||+||+.++++++|+++|+. ||.|..|.|..+. +++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445679999999999999999999998 9999999999997 8999999999999999999999999999999999999
Q ss_pred CcCccccc
Q 015468 242 GPAATKKA 249 (406)
Q Consensus 242 ~~~~~~~~ 249 (406)
.++.....
T Consensus 162 ~~a~~~~~ 169 (177)
T 2f3j_A 162 QLVASQID 169 (177)
T ss_dssp EEESSGGG
T ss_pred EEecCCCC
Confidence 99877543
No 335
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=1.5e-15 Score=111.03 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=63.7
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCccceec
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~~ 150 (406)
....+|||+|||+++|+++|+++|+.||.|.+|+|+++ ++|||||+|.+.++|++ +++..+.+.++.+.+.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 44578999999999999999999999999999999875 79999999999999983 5677666667888888
Q ss_pred cccc
Q 015468 151 WATY 154 (406)
Q Consensus 151 ~~~~ 154 (406)
++..
T Consensus 80 ~a~~ 83 (89)
T 3d2w_A 80 NAEP 83 (89)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 7764
No 336
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.5e-15 Score=108.98 Aligned_cols=79 Identities=23% Similarity=0.428 Sum_probs=71.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
...+.++|||+|||.++++++|+++|++ ||.|..+.+++ +||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFER-RGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHH-HSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHc-CCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456679999999999999999999998 99999999874 39999999999999999999999999999999
Q ss_pred CcCccccc
Q 015468 242 GPAATKKA 249 (406)
Q Consensus 242 ~~~~~~~~ 249 (406)
.++.+...
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 337
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=3.5e-15 Score=114.80 Aligned_cols=67 Identities=19% Similarity=0.314 Sum_probs=60.8
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 144 (406)
...++|||+|||+++++++|+++|+.||.|.+|.|+.+ |||||+|.+.++|++||+.||+..|.++.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 45688999999999999999999999999999999764 89999999999999999999999998765
No 338
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1e-14 Score=109.14 Aligned_cols=80 Identities=18% Similarity=0.401 Sum_probs=71.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhhC--CCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 015468 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVY--SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~--g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 238 (406)
....+.++|||+|||.++++++|+++|++ | |.|..+.+. +|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNN-IKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHT-TSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34456679999999999999999999998 9 888888763 579999999999999999999999999999
Q ss_pred eEeCcCccccc
Q 015468 239 MRIGPAATKKA 249 (406)
Q Consensus 239 i~v~~~~~~~~ 249 (406)
|+|.++.++..
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987654
No 339
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=121.37 Aligned_cols=81 Identities=28% Similarity=0.441 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCccCcHHHHHhhhccCCceEE--------EEee---CCCcEEEEEeCCHHHHHHHHHHhCCceeCCce
Q 015468 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVH--------VKIP---AGKRCGFVQFANRTCAEQALSVLNGTQLGGQS 339 (406)
Q Consensus 271 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~--------v~i~---~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~ 339 (406)
...+++|||+|||..+++++|+++|+.||.|.. +.+. +.+|+|||+|.+.++|.+|+..||+..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345688999999999999999999999998865 3332 34899999999999999999999999999999
Q ss_pred eEEeeccCCCCC
Q 015468 340 IRLSWGRSPSNK 351 (406)
Q Consensus 340 l~v~~~~~~~~~ 351 (406)
|+|+++++...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876543
No 340
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=1.5e-15 Score=113.27 Aligned_cols=84 Identities=24% Similarity=0.408 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQ----ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 238 (406)
..++++|||+|||.++++++|+ ++|++ ||.|..|.+.. +++++|+|||+|.+.++|.+|++.|++..+.|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSR-FGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGG-GSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 3456799999999999999999 99998 99999998874 4678899999999999999999999999999999
Q ss_pred eEeCcCcccccc
Q 015468 239 MRIGPAATKKAA 250 (406)
Q Consensus 239 i~v~~~~~~~~~ 250 (406)
|+|.++.++...
T Consensus 81 l~v~~a~~~~~~ 92 (97)
T 1nu4_A 81 MRIQYAKTDSDI 92 (97)
T ss_dssp CEEEECSSCCTH
T ss_pred EEEEEccCCCcc
Confidence 999999876543
No 341
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.9e-15 Score=110.06 Aligned_cols=80 Identities=23% Similarity=0.411 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCC-ccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC-cccCCcceE
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSS-VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG-VLCSTRPMR 240 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~-i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g-~~~~g~~i~ 240 (406)
....++|||+|||.++++++|+++|++ ||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..+.|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGD-RKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHH-TTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHH-cCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 345569999999999999999999998 999 6666653 478999999999999999999999 999999999
Q ss_pred eCcCcccccc
Q 015468 241 IGPAATKKAA 250 (406)
Q Consensus 241 v~~~~~~~~~ 250 (406)
|.++.++...
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999876543
No 342
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-14 Score=102.81 Aligned_cols=71 Identities=14% Similarity=0.282 Sum_probs=59.0
Q ss_pred CCce-EEEeCCCCCcCHHH----HHHHhccc-CCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 015468 72 GIRS-LWIGDLQPWMEESY----IASIFGHT-GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (406)
Q Consensus 72 ~~~~-l~V~nLp~~~t~~~----l~~~f~~~-G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 145 (406)
++.| |||+|||+++++++ |+++|+.| |.|.+| ++ |+|||.|.+.++|.+|++.|+|..+.++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr-- 74 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN-- 74 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS--
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc--
Confidence 3455 99999999999988 55899999 599888 22 9999999999999999999999999754
Q ss_pred cceeccccc
Q 015468 146 NFRLNWATY 154 (406)
Q Consensus 146 ~v~~~~~~~ 154 (406)
.+++.++..
T Consensus 75 ~i~v~~A~~ 83 (96)
T 2diu_A 75 RIIVSFTPK 83 (96)
T ss_dssp CCEEESSCC
T ss_pred eEEEEecCC
Confidence 555555543
No 343
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=1.9e-15 Score=112.45 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=73.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
...+.++|||+|||.++++++|+++|+. ||.|..+ ..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~-~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCS-EEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhh-CCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445679999999999999999999998 9988766 246889999999999999999999999999999999999
Q ss_pred CcCccccc
Q 015468 242 GPAATKKA 249 (406)
Q Consensus 242 ~~~~~~~~ 249 (406)
.++.++..
T Consensus 86 ~~a~~~~~ 93 (96)
T 1fjc_A 86 YYTGEKGG 93 (96)
T ss_dssp EECSSSCC
T ss_pred EEcCCCCC
Confidence 99877643
No 344
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.58 E-value=1.4e-15 Score=114.66 Aligned_cols=81 Identities=33% Similarity=0.601 Sum_probs=74.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++|||+|||.++++++|+++|+. ||.|..+.++.+. +++++|||||+|.+.++|.+|++ ++..+.|+.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFAR-YGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 4569999999999999999999998 9999999999997 99999999999999999999997 899999999999988
Q ss_pred ccccc
Q 015468 245 ATKKA 249 (406)
Q Consensus 245 ~~~~~ 249 (406)
..+..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 76543
No 345
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=7.5e-15 Score=109.22 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeC
Q 015468 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGA-KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 242 (406)
...++|||+|||+++++++|+++|++ ||.|..+ .++.++.++ .|||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQ-YGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHH-HSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHh-cCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34569999999999999999999998 9999999 477775443 39999999999999999999999999999999
Q ss_pred cCcccc
Q 015468 243 PAATKK 248 (406)
Q Consensus 243 ~~~~~~ 248 (406)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998763
No 346
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=6.7e-15 Score=107.50 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++|||+|||+++++++|+++|++ | .|..+.+. +++|+|||+|.+.++|.+|++.|++..+.|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKD-Y-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCS-S-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh-C-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 4568999999999999999999998 8 99999884 57899999999999999999999999999999999998
Q ss_pred cccc
Q 015468 245 ATKK 248 (406)
Q Consensus 245 ~~~~ 248 (406)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6643
No 347
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=107.42 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=69.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcC
Q 015468 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (406)
Q Consensus 165 ~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 244 (406)
..++|||+|||+++++++|+++|++ ||.|.+| +.+..+++ ||||+|.+.++|.+|++ |++..+.|+.|+|.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLA-FGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGG-TSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 4569999999999999999999998 9999987 55555555 99999999999999998 9999999999999988
Q ss_pred ccccc
Q 015468 245 ATKKA 249 (406)
Q Consensus 245 ~~~~~ 249 (406)
..+..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 76543
No 348
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=1.8e-14 Score=108.21 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCc-----cCcHHHHHhhhccCCceEEEEeeCC-------CcEEEEEeCCHHHHHHHHHHhCCceeCCce
Q 015468 272 PNNTTIFVGGLDP-----SVTDDILKTVFGQYGELVHVKIPAG-------KRCGFVQFANRTCAEQALSVLNGTQLGGQS 339 (406)
Q Consensus 272 ~~~~~l~v~~l~~-----~~~~~~l~~~f~~~G~v~~v~i~~~-------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~ 339 (406)
.++++|+|.||.. +.++++|+++|++||.|.+|.|+++ +|+|||+|++.++|.+|+..|||+.++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4568899999963 2378999999999999999999753 689999999999999999999999999999
Q ss_pred eEEeeccC
Q 015468 340 IRLSWGRS 347 (406)
Q Consensus 340 l~v~~~~~ 347 (406)
|+|+++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999875
No 349
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.4e-14 Score=105.83 Aligned_cols=80 Identities=15% Similarity=0.275 Sum_probs=71.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
...+.++|||+|| ++++++|+++|++ ||.|..|.+. +++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445679999996 8999999999998 9999999884 45899999999999999999999999999999999
Q ss_pred CcCcccccc
Q 015468 242 GPAATKKAA 250 (406)
Q Consensus 242 ~~~~~~~~~ 250 (406)
.++.++...
T Consensus 82 ~~a~~~~~~ 90 (97)
T 1x5p_A 82 NIARKQPML 90 (97)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 350
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=6.4e-15 Score=107.45 Aligned_cols=71 Identities=17% Similarity=0.417 Sum_probs=63.1
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhccc----C-------CeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCC
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHT----G-------EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGT 138 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 138 (406)
+...++|||+|||+++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .|++.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4567899999999999999999999999 8 8999998763 799999999999999999 89999
Q ss_pred CCCCCCccc
Q 015468 139 QMPSTEQNF 147 (406)
Q Consensus 139 ~~~~~~~~v 147 (406)
.+.++.+.|
T Consensus 76 ~~~g~~l~V 84 (87)
T 2hzc_A 76 IFQGQSLKI 84 (87)
T ss_dssp EETTEECEE
T ss_pred EECCeEEEE
Confidence 997654443
No 351
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.4e-15 Score=107.29 Aligned_cols=78 Identities=15% Similarity=0.276 Sum_probs=65.7
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCcccee
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~v~~ 149 (406)
+..+++|||+|||+++++++|+++|+.||.|.+|+|+++ ++|||||+|.+.++|++ +++..+....+.+.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v 72 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHI 72 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEE
Confidence 345789999999999999999999999999999999875 68999999999999975 455555556778888
Q ss_pred cccccCC
Q 015468 150 NWATYGA 156 (406)
Q Consensus 150 ~~~~~~~ 156 (406)
.++....
T Consensus 73 ~~a~~~~ 79 (88)
T 1wf0_A 73 SNAEPKH 79 (88)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 8876543
No 352
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.2e-14 Score=106.56 Aligned_cols=82 Identities=12% Similarity=0.228 Sum_probs=70.2
Q ss_pred CCCCCceEEEcCCCccC-----------cHHHHHhhhccCCceEEEEeeC--CCcEEEEEeCCHHHHHHHHHHhCCceeC
Q 015468 270 NDPNNTTIFVGGLDPSV-----------TDDILKTVFGQYGELVHVKIPA--GKRCGFVQFANRTCAEQALSVLNGTQLG 336 (406)
Q Consensus 270 ~~~~~~~l~v~~l~~~~-----------~~~~l~~~f~~~G~v~~v~i~~--~~~~afV~f~~~~~a~~a~~~l~~~~~~ 336 (406)
....+++|+|.||.... ++++|+++|++||.|.+|.|.. .+|+|||+|.+.++|.+|+..|||..|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34567899999994433 2589999999999999997753 3799999999999999999999999999
Q ss_pred CceeEEeeccCCCCC
Q 015468 337 GQSIRLSWGRSPSNK 351 (406)
Q Consensus 337 g~~l~v~~~~~~~~~ 351 (406)
|+.|+|+++.++...
T Consensus 91 gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 91 GRQITAQAWDGTTDY 105 (112)
T ss_dssp TEECEEEECCSCCCS
T ss_pred CcEEEEEEeCCCCCc
Confidence 999999999876543
No 353
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.54 E-value=4.3e-15 Score=119.25 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEE--------EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 015468 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGA--------KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC 234 (406)
Q Consensus 163 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~--------~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 234 (406)
..+.++|||+|||+++++++|+++|++ ||.|..+ .+. .+++++|||||+|.+.++|.+|++.||+..+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 345679999999999999999999998 9999874 222 3688999999999999999999999999999
Q ss_pred CCcceEeCcCcccccc
Q 015468 235 STRPMRIGPAATKKAA 250 (406)
Q Consensus 235 ~g~~i~v~~~~~~~~~ 250 (406)
.|+.|.|.++......
T Consensus 118 ~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 118 FGKPMVVQFARSARPK 133 (143)
T ss_dssp TTEECEEEECCCSCC-
T ss_pred CCcEEEEEECCCCCCc
Confidence 9999999999765433
No 354
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.53 E-value=3.5e-14 Score=106.66 Aligned_cols=84 Identities=12% Similarity=0.183 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHHHhhCCCccEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhcCcccCCc
Q 015468 164 GPDFTIFVGDLAA-----DVTDYVLQETFRAVYSSVKGAKVVTDRTT-GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237 (406)
Q Consensus 164 ~~~~~l~v~~l~~-----~~~~~~l~~~f~~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 237 (406)
.++++|+|.||.. +.++++|+++|++ ||.|.+|.|.+++.+ ++++|++||+|.+.++|.+|++.|||..+.||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEK-YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGG-GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHh-cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 3456999999963 2378999999998 999999999998653 68999999999999999999999999999999
Q ss_pred ceEeCcCcccc
Q 015468 238 PMRIGPAATKK 248 (406)
Q Consensus 238 ~i~v~~~~~~~ 248 (406)
.|.|.++....
T Consensus 85 ~i~v~~a~~~~ 95 (105)
T 2pe8_A 85 VVKACFYNLDK 95 (105)
T ss_dssp ECEEEECCHHH
T ss_pred EEEEEEcCHHH
Confidence 99999987643
No 355
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=9.5e-14 Score=116.84 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=67.8
Q ss_pred CceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 274 ~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
.++|||+|||.++++++|+++|+.||.|.+|+|+++ +|+|||+|++.++|.+|+..+ +..++|+.|+|.+++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 478999999999999999999999999999999863 789999999999999999865 56999999999998865
Q ss_pred C
Q 015468 349 S 349 (406)
Q Consensus 349 ~ 349 (406)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 3
No 356
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=109.82 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=67.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTT---GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
...++|||+|||+++++++|+++|++ ||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|+ .+.|+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRR-FGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTT-TCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34569999999999999999999998 99999 888877666 7999999999999999999999883 36777776
Q ss_pred eCcCc
Q 015468 241 IGPAA 245 (406)
Q Consensus 241 v~~~~ 245 (406)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 66544
No 357
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=5.4e-14 Score=118.33 Aligned_cols=121 Identities=11% Similarity=0.042 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHhCCC--CCCCCCccceecccccCCCCC--cCCCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEE
Q 015468 124 SHAAAERVLQTFNGT--QMPSTEQNFRLNWATYGAGER--RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKV 199 (406)
Q Consensus 124 ~~~~A~~A~~~l~~~--~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~ 199 (406)
+.+.+..|++..... .+......++.....+.+... .......++|||+|||+++++++|+++|++ ||.|..|++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTT-SCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhc-CCCEEEEEE
Confidence 667788888755222 233333333322111100000 001223568999999999999999999998 999999999
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccc
Q 015468 200 VTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (406)
Q Consensus 200 ~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 247 (406)
.++. +++++|+|||+|.+.++|.+|++.++ ..+.|+.|.|.+...-
T Consensus 142 ~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 142 RRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp EECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred EECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 9985 58999999999999999999997664 5899999999987654
No 358
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.49 E-value=7.8e-14 Score=119.85 Aligned_cols=81 Identities=20% Similarity=0.365 Sum_probs=69.9
Q ss_pred CCCCceEEEeCCCCCc---------CHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCC
Q 015468 70 SDGIRSLWIGDLQPWM---------EESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~---------t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 140 (406)
....++|||+||+.++ ++++|+++|+.||.|.+|+|+. ++|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5568999999999998 7999999999999999999986 589999999999999999999999998
Q ss_pred CC----------CCccceecccccCC
Q 015468 141 PS----------TEQNFRLNWATYGA 156 (406)
Q Consensus 141 ~~----------~~~~v~~~~~~~~~ 156 (406)
.. .+..|.|.|+..++
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 21 46678888887543
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=1e-13 Score=107.34 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=70.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEe
Q 015468 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (406)
Q Consensus 162 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v 241 (406)
...+.++|||+|| ++++++|+++|++ ||.|.+|.+. +++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~-~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHST-TCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHc-cCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456779999996 7999999999998 9999999986 45899999999999999999999999999999999
Q ss_pred CcCccccc
Q 015468 242 GPAATKKA 249 (406)
Q Consensus 242 ~~~~~~~~ 249 (406)
.++..+..
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99987643
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=1.2e-13 Score=103.87 Aligned_cols=76 Identities=13% Similarity=0.233 Sum_probs=66.1
Q ss_pred CCCceEEEcCC--CccC--------cHHHHHhhhccCCceEEEEeeCC--------CcEEEEEeCCHHHHHHHHHHhCCc
Q 015468 272 PNNTTIFVGGL--DPSV--------TDDILKTVFGQYGELVHVKIPAG--------KRCGFVQFANRTCAEQALSVLNGT 333 (406)
Q Consensus 272 ~~~~~l~v~~l--~~~~--------~~~~l~~~f~~~G~v~~v~i~~~--------~~~afV~f~~~~~a~~a~~~l~~~ 333 (406)
.++++|.|.|+ +.++ .+++|++.|++||.|.+|.|+++ +|+|||+|++.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45688999998 3333 33789999999999999999764 689999999999999999999999
Q ss_pred eeCCceeEEeeccC
Q 015468 334 QLGGQSIRLSWGRS 347 (406)
Q Consensus 334 ~~~g~~l~v~~~~~ 347 (406)
.++||.|+|++...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998764
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-12 Score=97.19 Aligned_cols=66 Identities=21% Similarity=0.381 Sum_probs=58.4
Q ss_pred ccCcHHHHHhhhccCCceEEEEee-CCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCCCCC
Q 015468 284 PSVTDDILKTVFGQYGELVHVKIP-AGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNK 351 (406)
Q Consensus 284 ~~~~~~~l~~~f~~~G~v~~v~i~-~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 351 (406)
..+++++|+++|++||.|.+|.|+ +.+|||||+|++.++|.+|+..++ .+.++.|+|+|++++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCCC
Confidence 468999999999999999999997 458999999999999999999744 468999999999987543
No 362
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.44 E-value=2.8e-13 Score=122.83 Aligned_cols=77 Identities=21% Similarity=0.358 Sum_probs=68.8
Q ss_pred CCCCCceEEEcC--CCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeC---Cc--eeEE
Q 015468 270 NDPNNTTIFVGG--LDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLG---GQ--SIRL 342 (406)
Q Consensus 270 ~~~~~~~l~v~~--l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~---g~--~l~v 342 (406)
...++.+|||+| |++.+|+++|+++|++||.|.+|.+.++|+||||+|++.++|.+|++.|||.++. |+ .|.|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 345668899998 5789999999999999999999999999999999999999999999999999983 44 6888
Q ss_pred eecc
Q 015468 343 SWGR 346 (406)
Q Consensus 343 ~~~~ 346 (406)
.|+.
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 8875
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=5.6e-13 Score=102.05 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=65.4
Q ss_pred CCceEEEcCCCcc-----CcHHHHHhhhccCCceEEEEeeCC----------CcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 015468 273 NNTTIFVGGLDPS-----VTDDILKTVFGQYGELVHVKIPAG----------KRCGFVQFANRTCAEQALSVLNGTQLGG 337 (406)
Q Consensus 273 ~~~~l~v~~l~~~-----~~~~~l~~~f~~~G~v~~v~i~~~----------~~~afV~f~~~~~a~~a~~~l~~~~~~g 337 (406)
++++|+|.|+-.. -.+++|++.|++||.|.+|.|+++ +|++||+|++.++|.+|+..|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4588999998432 246899999999999999999764 3799999999999999999999999999
Q ss_pred ceeEEeeccC
Q 015468 338 QSIRLSWGRS 347 (406)
Q Consensus 338 ~~l~v~~~~~ 347 (406)
|.|+|++...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 364
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.3e-12 Score=99.89 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=71.0
Q ss_pred CCCCCCceEEEcCCCCCCC-----------HHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 015468 161 QDDGPDFTIFVGDLAADVT-----------DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM 229 (406)
Q Consensus 161 ~~~~~~~~l~v~~l~~~~~-----------~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 229 (406)
....++++|+|.||....+ +++|+++|++ ||.|..|.| .+. .++|+|||+|.+.++|.+|++.|
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-FGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-cCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 3455677999999954432 5899999998 999999966 443 37999999999999999999999
Q ss_pred cCcccCCcceEeCcCccccc
Q 015468 230 NGVLCSTRPMRIGPAATKKA 249 (406)
Q Consensus 230 ~g~~~~g~~i~v~~~~~~~~ 249 (406)
|+..+.|+.|+|.++.++..
T Consensus 85 ng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TTCEETTEECEEEECCSCCC
T ss_pred CCCEECCcEEEEEEeCCCCC
Confidence 99999999999999877543
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=1.7e-13 Score=102.84 Aligned_cols=67 Identities=25% Similarity=0.392 Sum_probs=59.7
Q ss_pred EcCCCccCcHHHHHhhh------------ccCCceEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCceeE
Q 015468 279 VGGLDPSVTDDILKTVF------------GQYGELVHVKIPAG-----KRCGFVQFANRTCAEQALSVLNGTQLGGQSIR 341 (406)
Q Consensus 279 v~~l~~~~~~~~l~~~f------------~~~G~v~~v~i~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 341 (406)
+.||+..+++++|+++| ++||.|.+|.|+++ +|+|||+|.+.++|.+|+..|||+.++||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777888887777666 99999999999875 79999999999999999999999999999999
Q ss_pred Eeec
Q 015468 342 LSWG 345 (406)
Q Consensus 342 v~~~ 345 (406)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.39 E-value=4.6e-13 Score=100.60 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=71.4
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHHHHHhhCCCccEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhcC
Q 015468 164 GPDFTIFVGDL--AADVT--------DYVLQETFRAVYSSVKGAKVVTDRTT--GRSKGYGFVRFGDESEQLRSMTEMNG 231 (406)
Q Consensus 164 ~~~~~l~v~~l--~~~~~--------~~~l~~~f~~~~g~i~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~g 231 (406)
.+++.|.|.|+ +.++. +++|++.|++ ||.|.+|.|.++..+ ++++|++||+|.+.++|.+|++.|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 35668999997 33332 4689999998 999999999988654 46899999999999999999999999
Q ss_pred cccCCcceEeCcCcccc
Q 015468 232 VLCSTRPMRIGPAATKK 248 (406)
Q Consensus 232 ~~~~g~~i~v~~~~~~~ 248 (406)
..+.||.|+|.++....
T Consensus 82 ~~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPDS 98 (105)
T ss_dssp CEETTEECEEEEECHHH
T ss_pred CEeCCCEEEEEEeCHHH
Confidence 99999999999876643
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=1.6e-12 Score=98.81 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=64.9
Q ss_pred CCceEEEcCCCccC----------cHHHHHhhhccCCceEEEEeeCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCcee
Q 015468 273 NNTTIFVGGLDPSV----------TDDILKTVFGQYGELVHVKIPAG--KRCGFVQFANRTCAEQALSVLNGTQLGGQSI 340 (406)
Q Consensus 273 ~~~~l~v~~l~~~~----------~~~~l~~~f~~~G~v~~v~i~~~--~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l 340 (406)
++++|.|.|+=... .+++|++.|++||.|.+|.|.++ +|++||+|++.++|.+|+..|||+.++||.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45778888874321 34689999999999999999876 7999999999999999999999999999999
Q ss_pred EEeeccC
Q 015468 341 RLSWGRS 347 (406)
Q Consensus 341 ~v~~~~~ 347 (406)
+|+|+..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999763
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=8.4e-13 Score=101.07 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=70.7
Q ss_pred CCceEEEcCCCC--C---CCHHHHHHHHHhhCCCccEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 015468 165 PDFTIFVGDLAA--D---VTDYVLQETFRAVYSSVKGAKVVTDRT----TGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (406)
Q Consensus 165 ~~~~l~v~~l~~--~---~~~~~l~~~f~~~~g~i~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 235 (406)
++++|+|.|+-. + -.+++|++.|++ ||.|.+|.|.++.. +++++|++||+|.+.++|.+|++.|||..+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 455899999842 1 237899999998 99999999998854 4678899999999999999999999999999
Q ss_pred CcceEeCcCccc
Q 015468 236 TRPMRIGPAATK 247 (406)
Q Consensus 236 g~~i~v~~~~~~ 247 (406)
||.|+|.++...
T Consensus 98 GR~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GRKVVAEVYDQE 109 (118)
T ss_dssp TEECEEEEECHH
T ss_pred CcEEEEEEcChH
Confidence 999999987653
No 369
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=6.4e-12 Score=95.32 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=70.7
Q ss_pred CCCCCCceEEEcCCCcc-CcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC-HHHHHHHHHHhC--CceeCCceeEEee
Q 015468 269 ENDPNNTTIFVGGLDPS-VTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN-RTCAEQALSVLN--GTQLGGQSIRLSW 344 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~-~~~a~~a~~~l~--~~~~~g~~l~v~~ 344 (406)
..-+.++.|+|+||+.+ +++++|+++|+.||.|..|.+.++..+|||+|.+ .++|.+|+.+|+ +.+|+|..++++.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 34567799999999999 9999999999999999999999999999999999 899999999994 7789999888876
Q ss_pred cc
Q 015468 345 GR 346 (406)
Q Consensus 345 ~~ 346 (406)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.34 E-value=2.8e-13 Score=101.68 Aligned_cols=72 Identities=19% Similarity=0.367 Sum_probs=62.1
Q ss_pred EcCCCCCCCHHHHHHHH------------HhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 015468 171 VGDLAADVTDYVLQETF------------RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238 (406)
Q Consensus 171 v~~l~~~~~~~~l~~~f------------~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 238 (406)
+.+|++.+++++|+++| ++ ||.|.+|.|.++. +++++|+|||+|.+.++|.+|++.|||..+.||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~-~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEK-YGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhcc-CCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 45666667777666555 88 9999999999885 4789999999999999999999999999999999
Q ss_pred eEeCcC
Q 015468 239 MRIGPA 244 (406)
Q Consensus 239 i~v~~~ 244 (406)
|+|.++
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999875
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=1.6e-12 Score=117.84 Aligned_cols=114 Identities=14% Similarity=0.178 Sum_probs=78.9
Q ss_pred CCCCCCCceEEEeC--CCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC---
Q 015468 67 DASSDGIRSLWIGD--LQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--- 141 (406)
Q Consensus 67 ~~~~~~~~~l~V~n--Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~--- 141 (406)
...+.++++|||+| |+.++||++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||+.+.
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 34467788999999 578999999999999999999987753 5799999999999999999999999873
Q ss_pred CCCccceecccccCCCCC-cCCCCCCceEEEcCCCCCCCHHHHHHHHHh
Q 015468 142 STEQNFRLNWATYGAGER-RQDDGPDFTIFVGDLAADVTDYVLQETFRA 189 (406)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~-~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~ 189 (406)
++.+.+.+.+...-+... .....+..-.++ +..+++++-..++..
T Consensus 86 g~~~~ly~~~~~~~~~~~~~~~~lp~Gl~~~---p~fis~~Ee~~Ll~~ 131 (345)
T 3tht_A 86 GQKITLYLNFVEKVQWKELRPQALPPGLMVV---EEIISSEEEKMLLES 131 (345)
T ss_dssp SCEEECEEEECSSEEEEEEECCSCCTTEEEE---TTCSCHHHHHHHHTT
T ss_pred CCceEEEEEEeecccccccccccCCCceEEE---cCcCCHHHHHHHHHh
Confidence 233345555543111000 111112222233 455676666666654
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.2e-11 Score=90.06 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=62.6
Q ss_pred CCCCceEEEeCCC-------CCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCC
Q 015468 70 SDGIRSLWIGDLQ-------PWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (406)
Q Consensus 70 ~~~~~~l~V~nLp-------~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 142 (406)
....++|.|.-.. .++++++|+++|++||.|.+|.|+. +++|||||+|.+.++|..|++.+++ +.
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~- 78 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LV- 78 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CS-
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CC-
Confidence 3446778887765 4589999999999999999999983 4799999999999999999997554 32
Q ss_pred CCccceecccccCC
Q 015468 143 TEQNFRLNWATYGA 156 (406)
Q Consensus 143 ~~~~v~~~~~~~~~ 156 (406)
...+++.|+....
T Consensus 79 -g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 79 -DNPLKISWLEGQP 91 (100)
T ss_dssp -SSBCEEECSSCCC
T ss_pred -CCeEEEEEccCCC
Confidence 4567777776543
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1e-11 Score=87.89 Aligned_cols=75 Identities=25% Similarity=0.400 Sum_probs=63.3
Q ss_pred CCCCceEEEcCCCc----cCcH----HHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEE
Q 015468 271 DPNNTTIFVGGLDP----SVTD----DILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRL 342 (406)
Q Consensus 271 ~~~~~~l~v~~l~~----~~~~----~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 342 (406)
.++..+|+|.-++. ++-+ .+|.+.|+.||.|..++|..++ +||+|.+.++|.+|+. |||..++||.|+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 45566788776652 2323 6799999999999999999886 8999999999999998 9999999999999
Q ss_pred eeccCC
Q 015468 343 SWGRSP 348 (406)
Q Consensus 343 ~~~~~~ 348 (406)
.++++.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 999864
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=4.9e-11 Score=90.52 Aligned_cols=80 Identities=8% Similarity=0.047 Sum_probs=66.5
Q ss_pred CCCceEEEcCCCCCC----------CHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 015468 164 GPDFTIFVGDLAADV----------TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (406)
Q Consensus 164 ~~~~~l~v~~l~~~~----------~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 233 (406)
.++++|.|.|+=... .+++|++.|++ ||.|.+|.|.++. .+|++||+|.+.++|.+|++.|||..
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k-fG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK-HGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT-TTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhc-cCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 345688888873321 24588999998 9999999986653 58999999999999999999999999
Q ss_pred cCCcceEeCcCcccc
Q 015468 234 CSTRPMRIGPAATKK 248 (406)
Q Consensus 234 ~~g~~i~v~~~~~~~ 248 (406)
+.||.|+|.++....
T Consensus 80 f~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 80 FAGKMITAAYVPLPT 94 (114)
T ss_dssp ETTEECEEEEECHHH
T ss_pred ECCEEEEEEEEcHHH
Confidence 999999999986543
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=6.8e-11 Score=84.05 Aligned_cols=76 Identities=28% Similarity=0.453 Sum_probs=64.1
Q ss_pred CCCCCCceEEEcCCCcc-----CcH----HHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCce
Q 015468 269 ENDPNNTTIFVGGLDPS-----VTD----DILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQS 339 (406)
Q Consensus 269 ~~~~~~~~l~v~~l~~~-----~~~----~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~ 339 (406)
...++..+|+|.-++.. +-+ .+|.+.|+.||+|..++|..++ +||+|.+.++|.+||+ |+|..++||.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 34566788999877632 222 5689999999999999999886 9999999999999999 9999999999
Q ss_pred eEEeeccC
Q 015468 340 IRLSWGRS 347 (406)
Q Consensus 340 l~v~~~~~ 347 (406)
|+|++..+
T Consensus 87 L~V~~k~~ 94 (95)
T 1ufw_A 87 VKISGPSS 94 (95)
T ss_dssp EEEECCCC
T ss_pred EEEeccCC
Confidence 99998654
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=1e-09 Score=83.21 Aligned_cols=63 Identities=16% Similarity=0.021 Sum_probs=55.8
Q ss_pred CCCCceEEEeCCCCC-cCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcC-HHHHHHHHHHhCCC
Q 015468 70 SDGIRSLWIGDLQPW-MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS-HAAAERVLQTFNGT 138 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~-~~~A~~A~~~l~~~ 138 (406)
-...+.|+|+||+.+ +++++|+++|+.||.|..|.+.++.. .|||+|.+ .++|..|++.|+..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~ 79 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNG 79 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcC
Confidence 345678999999999 99999999999999999999988642 59999999 89999999998643
No 377
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.94 E-value=3.4e-09 Score=76.62 Aligned_cols=70 Identities=20% Similarity=0.316 Sum_probs=67.1
Q ss_pred CceEEEcCCCccCcHHHHHhhhccC-----CceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEe
Q 015468 274 NTTIFVGGLDPSVTDDILKTVFGQY-----GELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 343 (406)
Q Consensus 274 ~~~l~v~~l~~~~~~~~l~~~f~~~-----G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 343 (406)
.++|-+-+||+.+++..|+.+++++ |.|++|.+..+.+-|+|+|.|...|.+|..+|+|.+|.|++|+|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 4779999999999999999999999 999999999999999999999999999999999999999999985
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=4.8e-09 Score=74.22 Aligned_cols=72 Identities=22% Similarity=0.293 Sum_probs=59.2
Q ss_pred CceEEEcCCCC----CCCH----HHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc
Q 015468 166 DFTIFVGDLAA----DVTD----YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237 (406)
Q Consensus 166 ~~~l~v~~l~~----~~~~----~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~ 237 (406)
..+|+|.-.+. ++-. .+|.+.|.+ ||+|..+++..+. +||+|.+.++|.+|++ |+|..+.||
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFAS-FGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHT-TCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHh-CCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 34677666552 2222 678999998 9999999998873 8999999999999997 999999999
Q ss_pred ceEeCcCccc
Q 015468 238 PMRIGPAATK 247 (406)
Q Consensus 238 ~i~v~~~~~~ 247 (406)
.|+|+.+.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999987653
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.77 E-value=1e-08 Score=88.32 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=55.9
Q ss_pred CcHHHHHhhhccCCceEEEEee----------CCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 286 VTDDILKTVFGQYGELVHVKIP----------AGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 286 ~~~~~l~~~f~~~G~v~~v~i~----------~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
-.+++|++.|++||.|.++.|. +.+|++||+|.+.++|.+|+..|||+.++||.|.+++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3668899999999999999997 336899999999999999999999999999999999875
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.74 E-value=1.8e-08 Score=86.79 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHhhCCCccEEEEEecC----CCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEeCcCccc
Q 015468 178 VTDYVLQETFRAVYSSVKGAKVVTDR----TTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (406)
Q Consensus 178 ~~~~~l~~~f~~~~g~i~~~~~~~~~----~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 247 (406)
-.+++|++.|++ ||.|.++.|.++. .+++++|++||+|.+.++|.+|+..|||..+.||.|.+.+....
T Consensus 141 e~~~dl~~e~~~-~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTT-TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHc-cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 457899999998 9999999998653 34589999999999999999999999999999999999998653
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=2.3e-08 Score=71.11 Aligned_cols=71 Identities=18% Similarity=0.296 Sum_probs=59.6
Q ss_pred CCceEEEcCCCCC-----C-C---HHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 015468 165 PDFTIFVGDLAAD-----V-T---DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (406)
Q Consensus 165 ~~~~l~v~~l~~~-----~-~---~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 235 (406)
+..||+|.-++.+ + . -.+|.+.|.. ||+|..+++..++ +||+|.+.++|.+|++ |+|..+.
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGS-YGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHH-HSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHH-CCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 4458888877643 2 2 1568999998 9999999999883 9999999999999997 9999999
Q ss_pred CcceEeCcCc
Q 015468 236 TRPMRIGPAA 245 (406)
Q Consensus 236 g~~i~v~~~~ 245 (406)
||.|+|++-.
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998754
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.56 E-value=4.5e-07 Score=65.63 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=65.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhhC-----CCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 015468 166 DFTIFVGDLAADVTDYVLQETFRAVY-----SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (406)
Q Consensus 166 ~~~l~v~~l~~~~~~~~l~~~f~~~~-----g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~g~~i~ 240 (406)
.++|-|-+||..+++..|+.++++ + |.|+.|.+..|. +-|+|+|.|...|.+|.-.|+|.+|.|++|+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~-~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQE-EIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHH-HTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhh-hhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 458999999999999999999998 9 999999999883 4599999999999999999999999999999
Q ss_pred eCcC
Q 015468 241 IGPA 244 (406)
Q Consensus 241 v~~~ 244 (406)
+...
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 8654
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.20 E-value=7.1e-06 Score=59.36 Aligned_cols=75 Identities=15% Similarity=0.225 Sum_probs=66.3
Q ss_pred CceEEEcCCCccC-cH----HHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccCC
Q 015468 274 NTTIFVGGLDPSV-TD----DILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSP 348 (406)
Q Consensus 274 ~~~l~v~~l~~~~-~~----~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 348 (406)
.++|+|.||+.++ .. +.++++|..|+.+......++-.-..|.|.+.++|.+|...|++..+.|+.|+|-++.+-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 3679999998865 32 567899999999999999988778899999999999999999999999999999999844
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=2.7e-05 Score=56.03 Aligned_cols=74 Identities=23% Similarity=0.351 Sum_probs=63.1
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccC-----CceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeeccC
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQY-----GELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 347 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~-----G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 347 (406)
..++|.|.|||..++++.|.-+|+.- |.|.+|+... +.|+|+|.+.+.|.+.|+. ..+.|.+..|.|.-.-+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 45789999999999999999999762 6899998876 7899999999999998883 58889999999976555
Q ss_pred CC
Q 015468 348 PS 349 (406)
Q Consensus 348 ~~ 349 (406)
..
T Consensus 84 ~~ 85 (104)
T 2dhx_A 84 RA 85 (104)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=2.7e-05 Score=56.02 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=64.8
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcc-----cCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCC
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGH-----TGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-----~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 144 (406)
+...++|.|.|||++++++.|+-+|+. =|+|.++.... +-|+|+|.+.+.|++.++ -....|.+..
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeE
Confidence 345678999999999999999999987 25688887753 468999999999999987 2244454433
Q ss_pred ccceecccccCCCCCcCCCCCCceEEEcCCCCCCC
Q 015468 145 QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVT 179 (406)
Q Consensus 145 ~~v~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~ 179 (406)
+.|..... ....+|++.+|+..++
T Consensus 76 LsV~P~~~-----------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 76 LSLRPAPP-----------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp CEEEECCC-----------CCCCCCCCCSCCCCCC
T ss_pred EEEEcCCC-----------CCcceEeeecCCCCCC
Confidence 33332211 1233788999988765
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.98 E-value=2.6e-05 Score=55.55 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=57.7
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCC--ccceEEEEEcCHHHHHHHHHHhCCCCCCCC
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNF--SEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~--~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 143 (406)
.+|.||+||+.+||+++.+.+.....+........+.+.+ ...-|||.|.+.+++....+.++|..+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5799999999999999999999998877777666544322 234599999999999999999999987543
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=9.4e-05 Score=55.13 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=60.9
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCC-ceeEEeecc
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGG-QSIRLSWGR 346 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g-~~l~v~~~~ 346 (406)
..+-|.|.+.+... .+.|.++|++||+|.+.....+.++..|.|.+..+|.+||.. ||..|++ -.|-|....
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 34678899998885 566888999999999998877789999999999999999995 9999985 567776643
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.74 E-value=0.00014 Score=51.54 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=48.8
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhC
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN 136 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 136 (406)
......++| ++|+.....||.++|+.||.| .|+.+.| ..|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 344566777 999999999999999999965 6777765 379999999999999998764
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=0.00012 Score=52.98 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=59.9
Q ss_pred CCCceEEEeCCCCCc-CH----HHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCCCCCc
Q 015468 71 DGIRSLWIGDLQPWM-EE----SYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~-t~----~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 145 (406)
+...+|+|.||+.++ +. +.++++|..|+++......++ -+=..|.|.+.++|.+|...|++..+.+.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~-- 74 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGK-- 74 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTE--
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCc--
Confidence 445789999999876 22 567899999999988888874 33468999999999999999999999765
Q ss_pred cceecccc
Q 015468 146 NFRLNWAT 153 (406)
Q Consensus 146 ~v~~~~~~ 153 (406)
.+++-++.
T Consensus 75 ~~r~YFgq 82 (104)
T 1wey_A 75 EMKLYFAQ 82 (104)
T ss_dssp ECEEECCC
T ss_pred eeEEEecC
Confidence 45555544
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.51 E-value=0.00055 Score=48.67 Aligned_cols=72 Identities=11% Similarity=0.155 Sum_probs=58.4
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC--------CcEEEEEeCCHHHHHHHHHHhCCceeCCc-----eeE
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG--------KRCGFVQFANRTCAEQALSVLNGTQLGGQ-----SIR 341 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~--------~~~afV~f~~~~~a~~a~~~l~~~~~~g~-----~l~ 341 (406)
++|.|++||..+|++++.+.++....+.......+ -..|+|.|.+.+++..-...++|+.+-+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 57899999999999999999999888776666543 25799999999999999999999987543 345
Q ss_pred Eeecc
Q 015468 342 LSWGR 346 (406)
Q Consensus 342 v~~~~ 346 (406)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 55553
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.41 E-value=0.00099 Score=47.28 Aligned_cols=56 Identities=13% Similarity=0.247 Sum_probs=45.5
Q ss_pred CCceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhC
Q 015468 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLN 331 (406)
Q Consensus 273 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~ 331 (406)
...+++| +.|.++.-.||.++|+.||.|. |..+. ...|||.|.+++.|..|+..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wid-DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID-DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEE-TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 3456667 9999999999999999999543 44433 4689999999999999999764
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.37 E-value=0.00014 Score=52.02 Aligned_cols=70 Identities=10% Similarity=0.069 Sum_probs=51.4
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCC--ccceEEEEEcCHHHHHHHHHHhCCCCCCC
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNF--SEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~--~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 142 (406)
+-+|.||.||+.+||+++.+.+..+-.+.....+....+-+ .-.-|||.|.+.+++....+.++|..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 45799999999999999988887765443333222222211 12458999999999999999999988754
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.32 E-value=0.00027 Score=50.30 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=45.9
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhC
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN 136 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 136 (406)
..++| ++|+.....||.++|+.||.| .|+.+.| ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999944 6666665 379999999999999999765
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.21 E-value=0.00038 Score=52.55 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=55.4
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEE-EEeeC-------------------CCcEEEEEeCCHHHHHHHHHHhCCce
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVH-VKIPA-------------------GKRCGFVQFANRTCAEQALSVLNGTQ 334 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~-v~i~~-------------------~~~~afV~f~~~~~a~~a~~~l~~~~ 334 (406)
.-|.|-+.|...+. .+.++|++||.|.+ +.+.+ +.++..|+|++..+|.+||.. ||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 45778888776554 57788999999876 32221 467889999999999999995 9999
Q ss_pred eCCceeEEeecc
Q 015468 335 LGGQSIRLSWGR 346 (406)
Q Consensus 335 ~~g~~l~v~~~~ 346 (406)
|+|..|-|...+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988887665
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.05 E-value=0.001 Score=47.34 Aligned_cols=54 Identities=13% Similarity=0.254 Sum_probs=44.9
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhC
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLN 331 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~ 331 (406)
.+++| +.|.++.-.||.++|+.||.| .|..+. ...|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid-DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID-DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE-TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 45667 999999999999999999944 455444 4689999999999999999774
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.02 E-value=0.0018 Score=48.29 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=53.4
Q ss_pred CCCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCCCCC
Q 015468 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (406)
Q Consensus 70 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 141 (406)
....+.|.|-+.|++. .+.|...|+.||.|.+..... ...+-.|.|.+..+|++||. .||+.|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEec
Confidence 3457889999999985 666777899999998888621 46799999999999999998 7888875
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.99 E-value=0.003 Score=45.16 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=55.9
Q ss_pred CceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCC--------CcEEEEEeCCHHHHHHHHHHhCCceeCCc-----ee
Q 015468 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG--------KRCGFVQFANRTCAEQALSVLNGTQLGGQ-----SI 340 (406)
Q Consensus 274 ~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~--------~~~afV~f~~~~~a~~a~~~l~~~~~~g~-----~l 340 (406)
+-+|.|+.||..+|++++.+.++..-.+.......+ -..|+|.|.+.++...-...++|..+-+. ..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 467999999999999999999987655544333332 24689999999999999999999987543 45
Q ss_pred EEeecc
Q 015468 341 RLSWGR 346 (406)
Q Consensus 341 ~v~~~~ 346 (406)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566653
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.47 E-value=0.0015 Score=61.23 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=43.0
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHH
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 133 (406)
.|+|+|. .|..+++.+|.++|++||.|.++....+. .-||.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4679998 79999999999999999999999998753 4799999999999998765
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.05 E-value=0.0031 Score=59.17 Aligned_cols=53 Identities=9% Similarity=0.206 Sum_probs=41.5
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCc-EEEEEeCCHHHHHHHHH
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKR-CGFVQFANRTCAEQALS 328 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~-~afV~f~~~~~a~~a~~ 328 (406)
++|+|. .+..+++.+|.++|+.||.|.++.+-+++| +|.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 679997 688999999999999999999998888765 89999999998887665
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.95 E-value=0.019 Score=43.34 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=47.8
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeE-EEEEec--------CCCC-----CccceEEEEEcCHHHHHHHHHHhCC
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVS-GKVIRN--------KQTN-----FSEGYGFIEFVSHAAAERVLQTFNG 137 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~-~~i~~~--------~~~g-----~~~g~afV~f~~~~~A~~A~~~l~~ 137 (406)
....|.|-+.|++. ...|.+.|++||.|.+ +.+.++ +... ....+..|+|.+..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 34568899998876 4556678999999866 221110 0000 135788999999999999998 888
Q ss_pred CCCCC
Q 015468 138 TQMPS 142 (406)
Q Consensus 138 ~~~~~ 142 (406)
..|.+
T Consensus 84 ~ii~G 88 (132)
T 3p3d_A 84 AVFNG 88 (132)
T ss_dssp CEETT
T ss_pred eEeCc
Confidence 88865
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.67 E-value=0.41 Score=45.81 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=47.0
Q ss_pred CCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCC
Q 015468 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNG 137 (406)
Q Consensus 72 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 137 (406)
....++|+ +|..+...+|.++|+.||.| +|+.+.+ ..|||.|.+.+.|..++..++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 45677776 88899999999999999954 6665543 4799999999999999998864
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.40 E-value=1.7 Score=41.48 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=45.4
Q ss_pred CceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCC
Q 015468 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNG 332 (406)
Q Consensus 274 ~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~ 332 (406)
...++|+ ++..+...+|.+.|+.||.| +|.++ +...|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cCCeEEEEECCHHHHHHHHHHHHh
Confidence 4566666 88899999999999999954 45444 456799999999999999998853
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=84.03 E-value=3 Score=28.04 Aligned_cols=60 Identities=12% Similarity=0.238 Sum_probs=39.2
Q ss_pred ccCcHHHHHhhhccCC-----ceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCceeEEeecc
Q 015468 284 PSVTDDILKTVFGQYG-----ELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGR 346 (406)
Q Consensus 284 ~~~~~~~l~~~f~~~G-----~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 346 (406)
..++..+|..++..-+ .|-.|+|..+ +.||+-.. +.|.+++..|++..+.|+.+.|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN--ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS--CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC--cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 3466666776665443 4556666544 88898875 56888999999999999999998765
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=77.20 E-value=14 Score=25.36 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=50.7
Q ss_pred CceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHHhCCc-------eeCCceeEEe
Q 015468 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGT-------QLGGQSIRLS 343 (406)
Q Consensus 274 ~~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~l~~~-------~~~g~~l~v~ 343 (406)
++.|.|-|+|..+-..++.-.....|---.+... .|-|.|.|.+.++-.-|+..|-+. ++.|..+.|-
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvi 86 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVI 86 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeee
Confidence 4678899999999888877777777766666655 468999999999999999887222 3456655553
No 405
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=64.46 E-value=17 Score=23.61 Aligned_cols=54 Identities=9% Similarity=-0.037 Sum_probs=44.3
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHHH
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSV 329 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~~ 329 (406)
.++.|.++.-.-....|.+.+.. ..|..+.+....+.+.|+|.+.+...+++..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 46889999888888999999998 8899998877778889999866666677765
No 406
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=62.93 E-value=27 Score=24.95 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHhhCCCccEEEEEe----cCCCCCcceEEEEEeCCHHHHHHH
Q 015468 176 ADVTDYVLQETFRAVYSSVKGAKVVT----DRTTGRSKGYGFVRFGDESEQLRS 225 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g~i~~~~~~~----~~~~~~~~g~~fv~f~~~~~a~~a 225 (406)
...+..+|++.+.+.|+.-.++.++. .-..+++.|||.| |+|.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 67788999999998777644433332 2334677777766 7777776654
No 407
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=62.36 E-value=9.3 Score=27.65 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHhhCCCccEEEEEe----cCCCCCcceEEEEEeCCHHHHHHH
Q 015468 176 ADVTDYVLQETFRAVYSSVKGAKVVT----DRTTGRSKGYGFVRFGDESEQLRS 225 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g~i~~~~~~~----~~~~~~~~g~~fv~f~~~~~a~~a 225 (406)
...+..+|++.+.+.|+.-.++.++. .-..+++.|||.| |+|.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56789999999998777644433333 2234677888866 8888777654
No 408
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=60.72 E-value=1.8 Score=39.35 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=8.4
Q ss_pred ccCcHHHHHhhhc
Q 015468 284 PSVTDDILKTVFG 296 (406)
Q Consensus 284 ~~~~~~~l~~~f~ 296 (406)
..+++++|++...
T Consensus 227 ~~vt~~~l~~i~~ 239 (358)
T 2pk2_A 227 ATVTLELLDELTH 239 (358)
T ss_dssp SSCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 3467777777654
No 409
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=57.27 E-value=50 Score=23.57 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHhhCCCccEEEEE----ecCCCCCcceEEEEEeCCHHHHHHH
Q 015468 176 ADVTDYVLQETFRAVYSSVKGAKVV----TDRTTGRSKGYGFVRFGDESEQLRS 225 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g~i~~~~~~----~~~~~~~~~g~~fv~f~~~~~a~~a 225 (406)
...+..+|++.+.+.|+.-.++.++ ..-..+++.|||.| |+|.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 6778999999999877764433332 23345677888866 7887776553
No 410
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=56.46 E-value=8.4 Score=27.39 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHhhCCCccEEEEEecC----CCCCcceEEEEEeCCHHHHHH
Q 015468 176 ADVTDYVLQETFRAVYSSVKGAKVVTDR----TTGRSKGYGFVRFGDESEQLR 224 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g~i~~~~~~~~~----~~~~~~g~~fv~f~~~~~a~~ 224 (406)
...+..+|++.+.+.|+.-.++.++..- ..+++.|||.| |+|.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4678899999999877664555454432 23567777765 666665554
No 411
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=55.48 E-value=17 Score=27.93 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHhhCCCccEEEEEec----CCCCCcceEEEEEeCCHHHHHHH
Q 015468 176 ADVTDYVLQETFRAVYSSVKGAKVVTD----RTTGRSKGYGFVRFGDESEQLRS 225 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g~i~~~~~~~~----~~~~~~~g~~fv~f~~~~~a~~a 225 (406)
...+..+|++.+.+.|+.-.++.++.. -..+++.|||.| |+|.+.|...
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 567889999999987776444444432 234677777776 7888777654
No 412
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=53.17 E-value=54 Score=22.76 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=22.9
Q ss_pred eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHh
Q 015468 100 FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135 (406)
Q Consensus 100 v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 135 (406)
|.++.+... ..||.||++...++...+++..
T Consensus 40 i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t 70 (92)
T 3lpe_A 40 VYSILASES-----LKGYVLVEAETKGDVEELIKGM 70 (92)
T ss_dssp EEEEEECTT-----STTEEEEEESSHHHHHHHHTTC
T ss_pred EEEEEEecc-----cCCEEEEEEecchhHHHHHHCC
Confidence 555555432 6899999999998888877633
No 413
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=52.70 E-value=35 Score=21.41 Aligned_cols=55 Identities=7% Similarity=0.128 Sum_probs=42.5
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC---HHHHHHHHHH
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN---RTCAEQALSV 329 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~---~~~a~~a~~~ 329 (406)
.++.|.++.-.-....|.+.+.....|..+.+....+.+.|+|.+ .++..+++..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 357788888877888899999988889999888888889999843 3445555554
No 414
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=52.15 E-value=44 Score=21.37 Aligned_cols=56 Identities=7% Similarity=0.077 Sum_probs=43.6
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeC----CHHHHHHHHHHh
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFA----NRTCAEQALSVL 330 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~----~~~~a~~a~~~l 330 (406)
.++.|.++.-.-....|.+.+.....|..+.+....+.+.|+|+ +.++..+++..+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 35778888887778889999998888988888777788999996 455666666653
No 415
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=51.82 E-value=55 Score=22.41 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=48.0
Q ss_pred CCCceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhCCC
Q 015468 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGT 138 (406)
Q Consensus 71 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 138 (406)
...|-|-|-|+|..+-..++.-.....|----|..+ .|.|.+.|.+.++-..|+..|-+.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEET
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhc
Confidence 456789999999999999988888888765455543 357999999999999999877543
No 416
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=50.09 E-value=56 Score=24.62 Aligned_cols=49 Identities=31% Similarity=0.450 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHhhCCCccEEEEEe----cCCCCCcceEEEEEeCCHHHHHHH
Q 015468 176 ADVTDYVLQETFRAVYSSVKGAKVVT----DRTTGRSKGYGFVRFGDESEQLRS 225 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g~i~~~~~~~----~~~~~~~~g~~fv~f~~~~~a~~a 225 (406)
...+..+|++.+.+.|+.-.++.++. .-..+++.|||.| |+|.+.|.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 46789999999998787644443333 2334677777776 7888777654
No 417
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=37.93 E-value=66 Score=19.39 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=39.2
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC---HHHHHHHHHH
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN---RTCAEQALSV 329 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~---~~~a~~a~~~ 329 (406)
++.|.++.-......|.+.+.....|.++.+....+.+.|+|.. .+...+++..
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHH
Confidence 35567776666677788888888788888888778888999863 3444455554
No 418
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=37.10 E-value=87 Score=20.50 Aligned_cols=56 Identities=7% Similarity=0.175 Sum_probs=42.6
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC----HHHHHHHHHHh
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN----RTCAEQALSVL 330 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~----~~~a~~a~~~l 330 (406)
.++.|.++.-......|...+.....|..+.+....+.+.|+|.. .+...+++..+
T Consensus 11 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 457788888777777788888888889999888778889999963 34455566553
No 419
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=36.89 E-value=94 Score=20.85 Aligned_cols=56 Identities=9% Similarity=0.219 Sum_probs=42.7
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC----HHHHHHHHHHh
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN----RTCAEQALSVL 330 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~----~~~a~~a~~~l 330 (406)
.++.|.++.-......|...+...-.|.++.+....+.+.|+|.. .+...+++..+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 357788887777778899999888889999888888899999963 34455566543
No 420
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=34.83 E-value=79 Score=19.38 Aligned_cols=54 Identities=6% Similarity=0.107 Sum_probs=39.9
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC---HHHHHHHHHH
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN---RTCAEQALSV 329 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~---~~~a~~a~~~ 329 (406)
++.|.++.-......|...+.....|.++.+....+.+.|.|.. .+....++..
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 46788887766777788888888889888888778889999874 3334445554
No 421
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=33.45 E-value=93 Score=19.76 Aligned_cols=56 Identities=9% Similarity=-0.140 Sum_probs=42.7
Q ss_pred CceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHh
Q 015468 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135 (406)
Q Consensus 73 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 135 (406)
..++.|.++....-...|++.+.. ..|..+.+-. ..+.+.|.|.+.++...+++.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~------~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL------NEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS------SEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc------cCCEEEEEECCHHHHHHHHHHc
Confidence 457899999998888999999998 7787777643 3456788888666677777643
No 422
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=31.85 E-value=91 Score=19.18 Aligned_cols=55 Identities=11% Similarity=0.204 Sum_probs=40.1
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC----HHHHHHHHHHh
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN----RTCAEQALSVL 330 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~----~~~a~~a~~~l 330 (406)
++.|.++.-......|...+.....|..+.+....+.+.|.|.. .+...+++..+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHC
Confidence 46788887766667788888888778888887778889999874 34445556553
No 423
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=31.22 E-value=93 Score=19.10 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=40.7
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC----HHHHHHHHHH
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN----RTCAEQALSV 329 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~----~~~a~~a~~~ 329 (406)
..+.|.++.-......|...+.....|..+.+....+.+.|.|.. .+...+++..
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 357788887766677788888888788888888778888999863 3444555554
No 424
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=30.16 E-value=98 Score=19.02 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=40.7
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC----HHHHHHHHHH
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN----RTCAEQALSV 329 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~----~~~a~~a~~~ 329 (406)
++.|.++.-......|...+.....|.++.+....+.+.|.|.. .+....++..
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 63 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATAD 63 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHH
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHh
Confidence 46777887777778888888888888888888778889999864 3444555554
No 425
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=30.14 E-value=93 Score=24.53 Aligned_cols=49 Identities=10% Similarity=0.033 Sum_probs=34.7
Q ss_pred eEEEeCCCCC---------cCHHHHHHHh--cccCCeeEEEEEecCCCCCccceEEEEEcCHH
Q 015468 75 SLWIGDLQPW---------MEESYIASIF--GHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126 (406)
Q Consensus 75 ~l~V~nLp~~---------~t~~~l~~~f--~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~ 126 (406)
++.|-|+|.. .+..+|++.| ..|.++ .++.+.+.. | ..|+|.|+|.+.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~-G-h~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYL-G-HSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSS-B-EEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCC-C-CceeEEEEecCCh
Confidence 4677888872 3446899977 999887 466665532 3 6899999997653
No 426
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=29.55 E-value=64 Score=22.22 Aligned_cols=25 Identities=4% Similarity=-0.045 Sum_probs=21.2
Q ss_pred CeeEEEEEecCCCCCccceEEEEEc
Q 015468 99 EFVSGKVIRNKQTNFSEGYGFIEFV 123 (406)
Q Consensus 99 ~v~~~~i~~~~~~g~~~g~afV~f~ 123 (406)
.|+++++..-...|+-+++|-|+|.
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~d 29 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 5889999887677889999999985
No 427
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=29.19 E-value=98 Score=18.69 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=40.3
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC----HHHHHHHHHH
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN----RTCAEQALSV 329 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~----~~~a~~a~~~ 329 (406)
++.|.++.-......|...+.....|..+.+....+.+.|+|.. .+...+++..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 47788887777778888888888788888888778889999964 3334444543
No 428
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=28.43 E-value=1e+02 Score=18.76 Aligned_cols=54 Identities=7% Similarity=0.046 Sum_probs=39.8
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCH---HHHHHHHHH
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANR---TCAEQALSV 329 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~---~~a~~a~~~ 329 (406)
++.|.++.-......|.+.+.....|..+.+....+.+.|+|... +...+++..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 467888877667778888888888888888888788888998743 334445543
No 429
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=28.23 E-value=1.6e+02 Score=20.76 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=43.1
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC----HHHHHHHHHH
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN----RTCAEQALSV 329 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~----~~~a~~a~~~ 329 (406)
.++.|.++.-......|...+...-.|..+.+....+.+.|+|.. .+...+++..
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~ 68 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 68 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 457788998888888899999988889999888888899999974 3444555554
No 430
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=27.94 E-value=1.2e+02 Score=19.24 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=41.6
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC----HHHHHHHHHHh
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN----RTCAEQALSVL 330 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~----~~~a~~a~~~l 330 (406)
..+.|.++.-......|...+.....|..+.+....+.+.|+|.. .+...+++..+
T Consensus 10 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 10 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 457788988877888899998888778777776667788899864 34445566553
No 431
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=27.93 E-value=1.2e+02 Score=19.18 Aligned_cols=55 Identities=9% Similarity=0.036 Sum_probs=41.2
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC----HHHHHHHHHHh
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN----RTCAEQALSVL 330 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~----~~~a~~a~~~l 330 (406)
++.|.++.-......|...+.....|..+.+....+.+.|.|.. .+....++..+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 47788887777778889999888888888887777888999863 34445556554
No 432
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.86 E-value=51 Score=21.24 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=14.2
Q ss_pred CceEEEEeeCCCcEEEEEeCCH
Q 015468 299 GELVHVKIPAGKRCGFVQFANR 320 (406)
Q Consensus 299 G~v~~v~i~~~~~~afV~f~~~ 320 (406)
|+|..|. ..+..|+|.|+|-
T Consensus 28 GtV~kV~--~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVD--SAREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEE--TTTTEEEEEETTT
T ss_pred eEEEEEe--cCCcEEEEEEccC
Confidence 5566554 4577999999873
No 433
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.86 E-value=1.8e+02 Score=22.96 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=32.6
Q ss_pred EEEcCCCcc---------CcHHHHHhhh--ccCCceEEEEeeCC---CcEEEEEeCC-HHHHHHHHH
Q 015468 277 IFVGGLDPS---------VTDDILKTVF--GQYGELVHVKIPAG---KRCGFVQFAN-RTCAEQALS 328 (406)
Q Consensus 277 l~v~~l~~~---------~~~~~l~~~f--~~~G~v~~v~i~~~---~~~afV~f~~-~~~a~~a~~ 328 (406)
+.|-|++.. .+..+|++.| +.|..+.-..+-.. .+++.|+|.+ ...-..|+.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 455666651 3457899977 99987664444332 5789999985 333344444
No 434
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=26.15 E-value=33 Score=17.03 Aligned_cols=12 Identities=8% Similarity=0.119 Sum_probs=10.4
Q ss_pred CHHHHHHHhccc
Q 015468 86 EESYIASIFGHT 97 (406)
Q Consensus 86 t~~~l~~~f~~~ 97 (406)
+|.+|++|.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 688999998887
No 435
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=25.66 E-value=80 Score=22.40 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=21.2
Q ss_pred CeeEEEEEecCCCCCccceEEEEEc
Q 015468 99 EFVSGKVIRNKQTNFSEGYGFIEFV 123 (406)
Q Consensus 99 ~v~~~~i~~~~~~g~~~g~afV~f~ 123 (406)
.|++++|.+-...|+-+++|-|+|.
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~d 29 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLD 29 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 5889999887677889999999985
No 436
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=24.98 E-value=1.2e+02 Score=18.49 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=40.2
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeC---CHHHHHHHHHHh
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFA---NRTCAEQALSVL 330 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~---~~~~a~~a~~~l 330 (406)
++.|.++.-......|...+.....|.++.+....+.+.|+|. +.+....++..+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHC
Confidence 4678888776667778888888888888888777888889886 234445555543
No 437
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=24.50 E-value=63 Score=20.87 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=13.4
Q ss_pred CceEEEEeeCCCcEEEEEeCC
Q 015468 299 GELVHVKIPAGKRCGFVQFAN 319 (406)
Q Consensus 299 G~v~~v~i~~~~~~afV~f~~ 319 (406)
|+|++| ...++.|+|.|.|
T Consensus 32 gtI~~V--~~~~gtC~V~F~D 50 (66)
T 2eqj_A 32 GTIKKI--NILKQSCFIIFED 50 (66)
T ss_dssp EEEEEE--ETTTTEEEEEETT
T ss_pred eEEEEE--ccCCcEEEEEEcc
Confidence 455544 3457899999987
No 438
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=24.50 E-value=8.7 Score=31.37 Aligned_cols=8 Identities=0% Similarity=-0.014 Sum_probs=2.9
Q ss_pred EEeeccCC
Q 015468 341 RLSWGRSP 348 (406)
Q Consensus 341 ~v~~~~~~ 348 (406)
+..+.+..
T Consensus 114 ~a~v~R~~ 121 (199)
T 3eiv_A 114 TAKVTKTS 121 (199)
T ss_dssp EEEEEEC-
T ss_pred eEEEEecc
Confidence 33444443
No 439
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.33 E-value=89 Score=22.38 Aligned_cols=25 Identities=4% Similarity=-0.045 Sum_probs=21.0
Q ss_pred CeeEEEEEecCCCCCccceEEEEEc
Q 015468 99 EFVSGKVIRNKQTNFSEGYGFIEFV 123 (406)
Q Consensus 99 ~v~~~~i~~~~~~g~~~g~afV~f~ 123 (406)
.|.+|+|.+-...|+-+++|-|+|.
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~d 29 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEET
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEEC
Confidence 5788998887677889999999985
No 440
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.24 E-value=28 Score=26.83 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=18.5
Q ss_pred HHHHhhhccCCceEEEEeeCCCcEEEEEeC
Q 015468 289 DILKTVFGQYGELVHVKIPAGKRCGFVQFA 318 (406)
Q Consensus 289 ~~l~~~f~~~G~v~~v~i~~~~~~afV~f~ 318 (406)
+|+.++|...|.|+... ..+||+||+.+
T Consensus 2 ~~~~~l~~~~G~Vkwfn--~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--CCCCeeEEeeC
Confidence 46678888888877554 45889999976
No 441
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=24.06 E-value=1.3e+02 Score=21.48 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=25.2
Q ss_pred eeEEEEEecCCCCCccceEEEEEcCHHHHHHHHHHhC
Q 015468 100 FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN 136 (406)
Q Consensus 100 v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 136 (406)
|.++....+ .+||-|||=.+..++..|++.+.
T Consensus 41 I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~ 72 (106)
T 3h7h_B 41 IKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVG 72 (106)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCG
T ss_pred eEEEEecCC-----CceEEEEEeCCHHHHHHHHhccc
Confidence 666665543 69999999999999999987543
No 442
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=23.97 E-value=2.2e+02 Score=20.95 Aligned_cols=56 Identities=7% Similarity=0.125 Sum_probs=44.4
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeC----CHHHHHHHHHHh
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFA----NRTCAEQALSVL 330 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~----~~~~a~~a~~~l 330 (406)
..+.|.++.-......|...+.....|.++.+....+.+.|+|. +.++..+++..+
T Consensus 76 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 76 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35788899888888889999998888988888777788999997 345556666654
No 443
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=23.81 E-value=1.4e+02 Score=18.59 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=40.5
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC----HHHHHHHHHH
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN----RTCAEQALSV 329 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~----~~~a~~a~~~ 329 (406)
++.|.++.-......|...+.....|..+.+....+.+.|.|.. .+....++..
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDD 62 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46788887766677788888888888888888778889999864 3444555654
No 444
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.59 E-value=30 Score=26.16 Aligned_cols=48 Identities=21% Similarity=0.396 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHhhCCC-ccEEEEEec----CCCCCcceEEEEEeCCHHHHHH
Q 015468 176 ADVTDYVLQETFRAVYSS-VKGAKVVTD----RTTGRSKGYGFVRFGDESEQLR 224 (406)
Q Consensus 176 ~~~~~~~l~~~f~~~~g~-i~~~~~~~~----~~~~~~~g~~fv~f~~~~~a~~ 224 (406)
...+..+|++.+.+.|+. -.++.++.. -..+++.|||.| |+|.+.|..
T Consensus 38 aTpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~I-Yds~d~aKk 90 (138)
T 3iz6_U 38 ANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLI-YDNLDAAKK 90 (138)
T ss_dssp CCCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCC-SSCHHHHHS
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 356789999999987776 444444433 234677888866 777766543
No 445
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=23.25 E-value=1.5e+02 Score=20.98 Aligned_cols=54 Identities=4% Similarity=0.022 Sum_probs=41.9
Q ss_pred EEcCCCCCCCHHHHHHHHHhhCCCccEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 015468 170 FVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (406)
Q Consensus 170 ~v~~l~~~~~~~~l~~~f~~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 231 (406)
+|-.++..+..+||.......||.-.++....+ -..|-..+.++..+|++.++-
T Consensus 20 RIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDr 73 (103)
T 2cu1_A 20 RILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDR 73 (103)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHH
T ss_pred EEEeccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHcc
Confidence 344567889999999888877998777666522 257889999999999988754
No 446
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.73 E-value=98 Score=21.23 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=36.4
Q ss_pred EEEcCCCccCcHHHHHhhhcc-CC-ceEEEEe---eCCCcEEEEEeCCHHHHHHHHHH
Q 015468 277 IFVGGLDPSVTDDILKTVFGQ-YG-ELVHVKI---PAGKRCGFVQFANRTCAEQALSV 329 (406)
Q Consensus 277 l~v~~l~~~~~~~~l~~~f~~-~G-~v~~v~i---~~~~~~afV~f~~~~~a~~a~~~ 329 (406)
.++.-+....+..+|++.++. |+ .|.+|.. +.+..-|+|++..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 444556778899999988876 44 4555543 33456799999987777665443
No 447
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=22.61 E-value=1.5e+02 Score=18.42 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=41.2
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC--HHHHHHHHHHh
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN--RTCAEQALSVL 330 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~--~~~a~~a~~~l 330 (406)
++.|.++.-.-....|...+.....|..+.+....+.+.|.|.. .+...+++..+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 6 SWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHc
Confidence 57788887777777888888888888888888778889999975 23334455543
No 448
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=21.73 E-value=90 Score=19.13 Aligned_cols=52 Identities=8% Similarity=0.118 Sum_probs=35.5
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCCHHHHHHHHH
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALS 328 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~~~~a~~a~~ 328 (406)
.+.|.++.-......|.+.+... .|..+.+....+.+.|.+...+....++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~~~i~~~i~ 55 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENLDSVLKKLE 55 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 35666666555566788888777 78788877777888899876433334444
No 449
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=21.71 E-value=1.5e+02 Score=18.33 Aligned_cols=53 Identities=9% Similarity=0.080 Sum_probs=39.0
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeC-CHHHHHHHHHH
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFA-NRTCAEQALSV 329 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~-~~~~a~~a~~~ 329 (406)
.++.| ++.-.--...|.+.+.....| ++.+....+.+.|++. +.+...+++..
T Consensus 4 ~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 4 HEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHH
Confidence 35678 887777778888888877778 8888777778888875 45555666654
No 450
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=21.53 E-value=1.5e+02 Score=18.24 Aligned_cols=45 Identities=4% Similarity=0.149 Sum_probs=37.6
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN 319 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~ 319 (406)
..+.|.++.-......|...+.....|..+.+....+.+.|.|..
T Consensus 6 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 50 (75)
T 1yjr_A 6 LELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDP 50 (75)
T ss_dssp EEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECC
Confidence 457888988877788899999888889888888778889999974
No 451
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=21.01 E-value=1.4e+02 Score=17.70 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=39.0
Q ss_pred eEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeCC----HHHHHHHHHH
Q 015468 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN----RTCAEQALSV 329 (406)
Q Consensus 276 ~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~~----~~~a~~a~~~ 329 (406)
++.|.++.-.-....|...+...-.|..+.+....+.+.|.|.. .+....++..
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46778887666667788888888788888887778888999874 3344455554
No 452
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=20.81 E-value=2.1e+02 Score=20.25 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHhcccCCeeEEEEEecCCCCCccceEEEEEcC
Q 015468 89 YIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124 (406)
Q Consensus 89 ~l~~~f~~~G~v~~~~i~~~~~~g~~~g~afV~f~~ 124 (406)
+|.+.++..| |.+..|..+..+ ..-|++++..+
T Consensus 28 Ev~~~L~~aG-i~~ysIfl~~~~--~~LF~~~E~~d 60 (104)
T 1x8d_A 28 ELEAVLKSHG-AHNYAIYLDKAR--NLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHTT-EEEEEEEEETTT--TEEEEEEEESC
T ss_pred HHHHHHHHcC-CeEEEEEEECCC--CeEEEEEEEcC
Confidence 5777888888 788888887422 34689999988
No 453
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=26.14 E-value=21 Score=25.77 Aligned_cols=61 Identities=8% Similarity=-0.014 Sum_probs=38.0
Q ss_pred ceEEEeCCCCCcCHHHHHHHhcccCCeeEEEEEecCCCCCcc-ceEEEEEcCHHHHHHHHHHhCCC
Q 015468 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE-GYGFIEFVSHAAAERVLQTFNGT 138 (406)
Q Consensus 74 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~g~~~-g~afV~f~~~~~A~~A~~~l~~~ 138 (406)
-+|-|... .++++|..|..+.+ +..+.+.+....|+.. -.-|=.|.|.++|.+|++.|-..
T Consensus 26 YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 26 YTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 34444433 35677888888876 4567776654343221 12244689999999999876543
No 454
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.40 E-value=2.1e+02 Score=19.53 Aligned_cols=54 Identities=9% Similarity=0.043 Sum_probs=40.2
Q ss_pred ceEEEcCCCccCcHHHHHhhhccCCceEEEEeeCCCcEEEEEeC-CHHHHHHHHHH
Q 015468 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFA-NRTCAEQALSV 329 (406)
Q Consensus 275 ~~l~v~~l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~afV~f~-~~~~a~~a~~~ 329 (406)
.++.|. +.-.-....|.+.+.....|.++.+....+.+.|++. +.+...++|..
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHH
Confidence 346677 7666677889999999888989888888888888885 34455555554
No 455
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.34 E-value=1.2e+02 Score=20.79 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=21.4
Q ss_pred CccEEEEEecCCCCCcceEEEEEeCC
Q 015468 193 SVKGAKVVTDRTTGRSKGYGFVRFGD 218 (406)
Q Consensus 193 ~i~~~~~~~~~~~~~~~g~~fv~f~~ 218 (406)
.|++|++..-...++-+++|=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788888776678999999999975
No 456
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=20.11 E-value=86 Score=20.83 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=14.3
Q ss_pred CceEEEEeeCCCcEEEEEeCCH
Q 015468 299 GELVHVKIPAGKRCGFVQFANR 320 (406)
Q Consensus 299 G~v~~v~i~~~~~~afV~f~~~ 320 (406)
|+|..|. ..+..|+|.|+|-
T Consensus 45 GTI~kV~--~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVD--SAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEE--TTTTEEEEEETTS
T ss_pred EEEEEec--cCCCEEEEEEcCC
Confidence 6666654 4467899999874
Done!