BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015469
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/386 (51%), Positives = 268/386 (69%), Gaps = 13/386 (3%)
Query: 18 LSEENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNEPMNTREETYMAIRKMLATLD 77
++ E LFLEAWR +DRAYVDK+FNGQSWF+ RE L+ EPM+ R +TY AIRK+LA LD
Sbjct: 2 VTSEQLLFLEAWRAVDRAYVDKSFNGQSWFKLRETYLKKEPMDRRAQTYDAIRKLLAVLD 61
Query: 78 DPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGIL 137
DPFTRFLEP + +LR GT G++TGVGL I Y GS +VV++ PGGPA +AG
Sbjct: 62 DPFTRFLEPSRLAALRRGTAGSVTGVGLEITY---DGGSGKDVVVLTPAPGGPAEKAGAR 118
Query: 138 SGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS-GA--EIRHLALTREKVSLNP 194
+GDVI+ +D T+ + + +YD ++ LQG S VE+ + + GA R L LTR+KV++NP
Sbjct: 119 AGDVIVTVDGTAVKGLSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQKVTINP 178
Query: 195 VKSRLC-----VVPGPGKSSPRIGYIKLTSFNQNASGAVREAIDTLRSNSVNAFVLDLRD 249
V C PG + ++GY++L +FN N + A ++A L V VLD+R+
Sbjct: 179 VTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIRN 238
Query: 250 NSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLVNKGTASA 309
N GGLFP G+ +A++ +D+G +V I DS+G+RDIY DG +++ ++ PL VLVN+GTASA
Sbjct: 239 NGGGLFPAGVNVARMLVDRGDLVLIADSQGIRDIYSADG-NSIDSATPLVVLVNRGTASA 297
Query: 310 SEILAGALKDNKRAVLFGEPTYGKGKIQSVFQLSDGSGLAVTVARYETPAHTDIDKVGVI 369
SE+LAGALKD+KR ++ GE T+GKG IQ+V LSDGSG+AVTVARY+TPA DI+K+GV
Sbjct: 298 SEVLAGALKDSKRGLIAGERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVS 357
Query: 370 PDHPL-PKTFPKDEDGFCGCLQDSAS 394
PD L P+ P D +G C L A+
Sbjct: 358 PDVQLDPEVLPTDLEGVCRVLGSDAA 383
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/386 (50%), Positives = 264/386 (68%), Gaps = 13/386 (3%)
Query: 18 LSEENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNEPMNTREETYMAIRKMLATLD 77
++ E LFLEAWR +DRAYVDK+FNGQSWF+ RE L+ EP + R +TY AIRK LA LD
Sbjct: 2 VTSEQLLFLEAWRAVDRAYVDKSFNGQSWFKLRETYLKKEPXDRRAQTYDAIRKXLAVLD 61
Query: 78 DPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGIL 137
DPFTRFLEP + +LR GT G++TGVGL I Y GS +VV++ PGGPA +AG
Sbjct: 62 DPFTRFLEPSRLAALRRGTAGSVTGVGLEITY---DGGSGKDVVVLTPAPGGPAEKAGAR 118
Query: 138 SGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS-GA--EIRHLALTREKVSLNP 194
+GDVI+ +D T+ + +YD ++ LQG S VE+ + + GA R L LTR+KV++NP
Sbjct: 119 AGDVIVTVDGTAVKGXSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQKVTINP 178
Query: 195 VKSRLC-----VVPGPGKSSPRIGYIKLTSFNQNASGAVREAIDTLRSNSVNAFVLDLRD 249
V C PG + ++GY++L +FN N + A ++A L V VLD+R+
Sbjct: 179 VTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIRN 238
Query: 250 NSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLVNKGTASA 309
N GGLFP G+ +A+ +D+G +V I DS+G+RDIY DG +++ ++ PL VLVN+GTASA
Sbjct: 239 NGGGLFPAGVNVARXLVDRGDLVLIADSQGIRDIYSADG-NSIDSATPLVVLVNRGTASA 297
Query: 310 SEILAGALKDNKRAVLFGEPTYGKGKIQSVFQLSDGSGLAVTVARYETPAHTDIDKVGVI 369
SE+LAGALKD+KR ++ GE T+GKG IQ+V LSDGSG+AVTVARY+TPA DI+K+GV
Sbjct: 298 SEVLAGALKDSKRGLIAGERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVS 357
Query: 370 PDHPL-PKTFPKDEDGFCGCLQDSAS 394
PD L P+ P D +G C L A+
Sbjct: 358 PDVQLDPEVLPTDLEGVCRVLGSDAA 383
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 127 PGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 174
PG PA +AG+ +GD ++A+ S E +G + R+QG +GS V LTV
Sbjct: 39 PGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQG-QGSCVSLTV 85
>pdb|3DOR|A Chain A, Crystal Structure Of Mature Cpaf
pdb|3DOR|B Chain B, Crystal Structure Of Mature Cpaf
pdb|3DPM|A Chain A, Structure Of Mature Cpaf Complexed With Lactacystin
pdb|3DPM|B Chain B, Structure Of Mature Cpaf Complexed With Lactacystin
Length = 583
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 295 SEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKGKIQSVFQLSDGSGLAV---- 350
S+P+ VL+N+ S ++ LKDN RA++ G T G G Q + +G+
Sbjct: 454 SKPICVLINEQDFSCADFFPVVLKDNDRALIVGTRTAGAGGFVFNVQFPNRTGIKTCSLT 513
Query: 351 -TVARYETPAHTDIDKVGVIPDHPLPKT 377
++A E A I+ +GV P LP T
Sbjct: 514 GSLAVREHGAF--IENIGVEPHIDLPFT 539
>pdb|3DJA|A Chain A, Crystal Structure Of Cpaf Solved With Mad
pdb|3DJA|B Chain B, Crystal Structure Of Cpaf Solved With Mad
Length = 579
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 295 SEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKGKIQSVFQLSDGSGLAV---- 350
S+P+ VL+N+ S ++ LKDN RA++ G T G G Q + +G+
Sbjct: 456 SKPICVLINEQDFSCADFFPVVLKDNDRALIVGTRTAGAGGFVFNVQFPNRTGIKTCSLT 515
Query: 351 -TVARYETPAHTDIDKVGVIPDHPLPKT 377
++A E A I+ +GV P LP T
Sbjct: 516 GSLAVREHGAF--IENIGVEPHIDLPFT 541
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 120 LVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ 163
LV+ PG A A + GDVILAID TESM DA +R++
Sbjct: 31 LVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIK 74
>pdb|3DPN|A Chain A, Crystal Structure Of Cpaf S499a Mutant
pdb|3DPN|B Chain B, Crystal Structure Of Cpaf S499a Mutant
Length = 583
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 295 SEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKGKIQSVFQLSDGSGLAV---- 350
S+P+ VL+N+ + ++ LKDN RA++ G T G G Q + +G+
Sbjct: 454 SKPICVLINEQDFACADFFPVVLKDNDRALIVGTRTAGAGGFVFNVQFPNRTGIKTCSLT 513
Query: 351 -TVARYETPAHTDIDKVGVIPDHPLPKT 377
++A E A I+ +GV P LP T
Sbjct: 514 GSLAVREHGAF--IENIGVEPHIDLPFT 539
>pdb|3K50|A Chain A, Crystal Structure Of Putative S41 Protease (Yp_211611.1)
From Bacteroides Fragilis Nctc 9343 At 2.00 A Resolution
Length = 403
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 26/164 (15%)
Query: 109 YPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAID-DTSTESMGIYDAAERLQGPE- 166
Y + ++ ++ +PG PA AG+ G I + D T+ + +E LQG
Sbjct: 81 YKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIXXXNGDYITKKV----ESELLQGSTR 136
Query: 167 ----GSPVELTVRSG------AEIRHLALTREKVSLNPVKSRLCVVPGPGKSSPRIGYIK 216
G E+ G I + ++ R ++P GK ++GY+
Sbjct: 137 QLQIGVYKEVVGEDGEVTGGVVPIGETTXPASRSLVDKPVHRFEIIPWNGK---KVGYLX 193
Query: 217 LTSF-------NQNASGAVREAIDTLRSNSVNAFVLDLRDNSGG 253
F +Q + +R A ++ VN FVLDLR N+GG
Sbjct: 194 YNEFKAGPTTDSQAYNDDLRRAFRDFQTGGVNEFVLDLRYNTGG 237
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 35.8 bits (81), Expect = 0.048, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 119 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 178
G+++ + G PA+RAG+ GDVILAI + ++ A R Q S + + +R G
Sbjct: 36 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRTQ----SQLAVQIRRGR 91
Query: 179 EIRHLALTRE 188
E L +T E
Sbjct: 92 ETLTLYVTPE 101
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 107 IGYP-TASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQG 164
+GY T+ G ++G+ V S +PG A G I D I+A+D + + +D E L
Sbjct: 34 VGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVL-- 91
Query: 165 PEGSPVELTVRSGAEIRHLALTREKVS 191
R+ ++ HL L R K S
Sbjct: 92 ----------RNAGQVVHLTLVRRKTS 108
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 119 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESM-GIYDAAERLQGPEGSPVELTVRSG 177
G+++ + G PA+RAG+ GDVILAI + ++ +Y+A R Q S + + +R G
Sbjct: 257 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAV-RTQ----SQLAVQIRRG 311
Query: 178 AEIRHLALTRE 188
E L +T E
Sbjct: 312 RETLTLYVTPE 322
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 126 MPGGPANRAGILS-GDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 177
+PGG A+R G L GD +L+++ S E A E L+ +GS V+L VRSG
Sbjct: 38 IPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGS-VKLVVRSG 89
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 102 GVGLSIGYPTAS---DGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDA 158
G+G+SI S G G+ + GPA RAG+ GD +L ++ + + ++A
Sbjct: 15 GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEA 74
Query: 159 AERLQGPEGSPVELTV 174
E L+G G+ V++ V
Sbjct: 75 VEALRGA-GTAVQMRV 89
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 83 FLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVI 142
L P + LR G QG G+ SD S G + S PG PA R+G+ + D +
Sbjct: 2 MLRP-RLCHLRKGPQG--------YGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRL 52
Query: 143 LAIDDTSTESM 153
+ ++ + E +
Sbjct: 53 IEVNGQNVEGL 63
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 23/137 (16%)
Query: 73 LATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIG---------YPTASDGSSAGLVVI 123
L T + F ++ + + LR G L G SIG P + D + G+ V
Sbjct: 13 LGTENLYFQSMVQRVEIHKLRQGENLIL---GFSIGGGIDQDPSQNPFSEDKTDKGIYVT 69
Query: 124 SSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHL 183
GGPA AG+ GD I+ ++ +M +D A + LT RS E+ L
Sbjct: 70 RVSEGGPAEIAGLQIGDKIMQVNGWDM-TMVTHDQARK---------RLTKRS-EEVVRL 118
Query: 184 ALTREKVSLNPVKSRLC 200
+TR+ + +S L
Sbjct: 119 LVTRQSLQKAVQQSMLS 135
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 32.7 bits (73), Expect = 0.38, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 23/128 (17%)
Query: 72 MLATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIG---------YPTASDGSSAGLVV 122
M T P T ++ + + LR G L G SIG P + D + G+ V
Sbjct: 1 MSYTPGQPVTAVVQRVEIHKLRQGENLIL---GFSIGGGIDQDPSQNPFSEDKTDKGIYV 57
Query: 123 ISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRH 182
GGPA AG+ GD I+ ++ +M +D A + LT RS E+
Sbjct: 58 TRVSEGGPAEIAGLQIGDKIMQVNGWDM-TMVTHDQARK---------RLTKRS-EEVVR 106
Query: 183 LALTREKV 190
L +TR+ +
Sbjct: 107 LLVTRQSL 114
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 121 VVISSMP-GGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGS 168
+ ISS+ GG A +A + GDV+L+ID + + M +A +++G GS
Sbjct: 29 LTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGS 77
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 32.3 bits (72), Expect = 0.45, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 23/121 (19%)
Query: 79 PFTRFLEPEKFNSLRSGTQGALTGVGLSIG---------YPTASDGSSAGLVVISSMPGG 129
P T ++ + + LR G L G SIG P + D + G+ V GG
Sbjct: 8 PVTAVVQRVEIHKLRQGENLIL---GFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGG 64
Query: 130 PANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTREK 189
PA AG+ GD I+ ++ +M +D A + LT RS E+ L +TR+
Sbjct: 65 PAEIAGLQIGDKIMQVNGWDM-TMVTHDQARK---------RLTKRS-EEVVRLLVTRQS 113
Query: 190 V 190
+
Sbjct: 114 L 114
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 32.3 bits (72), Expect = 0.51, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 72 MLATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIG---------YPTASDGSSAGLVV 122
M T P T ++ + + LR G L G SIG P + D + G+ V
Sbjct: 2 MSYTPGQPVTAVVQRVEIHKLRQGENLIL---GFSIGGGIDQDPSQNPFSEDKTDKGIYV 58
Query: 123 ISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRH 182
GGPA AG+ GD I+ ++ +M +D A + LT RS E+
Sbjct: 59 TRVSEGGPAEIAGLQIGDKIMQVNGWDM-TMVTHDQARK---------RLTKRS-EEVVR 107
Query: 183 LALTRE 188
L +TR+
Sbjct: 108 LLVTRQ 113
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 32.0 bits (71), Expect = 0.57, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 23/121 (19%)
Query: 79 PFTRFLEPEKFNSLRSGTQGALTGVGLSIG---------YPTASDGSSAGLVVISSMPGG 129
P T ++ + + LR G L G SIG P + D + G+ V GG
Sbjct: 8 PVTAVVQRVEIHKLRQGENLIL---GFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGG 64
Query: 130 PANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTREK 189
PA AG+ GD I+ ++ +M +D A + LT RS E+ L +TR+
Sbjct: 65 PAEIAGLQIGDKIMQVNGWDM-TMVTHDQARK---------RLTKRS-EEVVRLLVTRQS 113
Query: 190 V 190
+
Sbjct: 114 L 114
>pdb|3SS7|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.55 A Resolution
pdb|3SS9|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.97 A Resolution
Length = 442
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 67 MAIRKMLATLDDPFTRFLEPE--KFNSLRSGTQGALTGVGLSIGYPTASDG 115
+A+ L TLDD +++ L PE +F S S G+ +GLSIG +A G
Sbjct: 133 LALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIG 183
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 120 LVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG 164
L + PG A A + GDVI AID +T +M +A R++G
Sbjct: 29 LAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG 73
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 120 LVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGS 168
L + S GG A++A + GDV+L+ID S + M +A +++ GS
Sbjct: 31 LTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGS 79
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 102 GVGLSIGYPTAS---DGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDA 158
G+G+SI S G G+ + GPA RAG+ GD +L ++ + + ++A
Sbjct: 27 GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEA 86
Query: 159 AERLQGPEGSPVELTV 174
E L+G G+ V++ V
Sbjct: 87 VEALRGA-GTAVQMRV 101
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 88 KFNSLRSGTQGALTG-----VGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVI 142
KF S+ G G + ++GYP G+ +V P PA AG+ +GD+I
Sbjct: 251 KFGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGA----LVSQVNPNSPAELAGLKAGDII 306
Query: 143 LAIDDT 148
I+DT
Sbjct: 307 TQINDT 312
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 88 KFNSLRSGTQGALTG-----VGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVI 142
KF S+ G G + ++GYP G+ +V P PA AG+ +GD+I
Sbjct: 251 KFGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGA----LVSQVNPNSPAELAGLKAGDII 306
Query: 143 LAIDDT 148
I+DT
Sbjct: 307 TQINDT 312
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 88 KFNSLRSGTQGALTG-----VGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVI 142
KF S+ G G + ++GYP G+ +V P PA AG+ +GD+I
Sbjct: 251 KFGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGA----LVSQVNPNSPAELAGLKAGDII 306
Query: 143 LAIDDT 148
I+DT
Sbjct: 307 TQINDT 312
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 102 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILS-GDVILAIDDTSTESMGIYDAAE 160
G GL++G G + L V + GPA R G L GD++L I+ ST+ + A E
Sbjct: 23 GFGLTLGGGRDVAGDTP-LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVE 81
Query: 161 RLQ--GPEGSPVELTVR 175
R++ GP+ + L +R
Sbjct: 82 RIRAGGPQ---LHLVIR 95
>pdb|2NVA|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|B Chain B, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|C Chain C, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|D Chain D, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|E Chain E, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|F Chain F, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|G Chain G, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|H Chain H, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
Length = 372
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 30/178 (16%)
Query: 161 RLQGPEGSPVELTVRSGA---EIRHLALTREKVSLNPVKSRLCVVPGPGKSSPRIGYIKL 217
R P + V+L + GA EIRHL +++ + + V G G +P Y
Sbjct: 135 RCDDPNAT-VQLGNKFGANEDEIRHLLEYAKQLDIEVIGISFHV--GSGSRNPEAYY--- 188
Query: 218 TSFNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVI-VYICD 276
A + +EA + S ++LD+ GGL + +D+G + Y+ D
Sbjct: 189 -----RAIKSSKEAFNEAISVGHKPYILDI---GGGLHAD--------IDEGELSTYMSD 232
Query: 277 --SRGVRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYG 332
+ ++D + D +A EP + A++++ ++D F E TYG
Sbjct: 233 YINDAIKDFFPEDTVTIVA--EPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYG 288
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 126 MPGGPANRAGILSGDVILAIDDTSTE 151
+PGG A+RAG+ GD IL ++ + E
Sbjct: 51 LPGGAADRAGVRKGDRILEVNGVNVE 76
>pdb|2NV9|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|B Chain B, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|C Chain C, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|D Chain D, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|E Chain E, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|F Chain F, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|G Chain G, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|H Chain H, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
Length = 372
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 30/178 (16%)
Query: 161 RLQGPEGSPVELTVRSGA---EIRHLALTREKVSLNPVKSRLCVVPGPGKSSPRIGYIKL 217
R P + V+L + GA EIRHL +++ + + V G G +P Y
Sbjct: 135 RCDDPNAA-VQLGNKFGANEDEIRHLLEYAKQLDIEVIGISFHV--GSGSRNPEAYY--- 188
Query: 218 TSFNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVI-VYICD 276
A + +EA + S ++LD+ GGL + +D+G + Y+ D
Sbjct: 189 -----RAIKSSKEAFNEAISVGHKPYILDI---GGGLHAD--------IDEGELSTYMSD 232
Query: 277 --SRGVRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYG 332
+ ++D + D +A EP + A++++ ++D F E TYG
Sbjct: 233 YINDAIKDFFPEDTVTIVA--EPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYG 288
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 126 MPGGPANRAGILSGDVILAIDDTSTE 151
+PGG A+RAG+ GD IL ++ + E
Sbjct: 51 LPGGAADRAGVRKGDRILEVNGVNVE 76
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 122 VISSMPGGPANRAGILSGDVILAIDDTSTE 151
V + +PGG A+RAG+ GD IL ++ + E
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVE 76
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 88 KFNSLRSGTQGALTG-----VGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVI 142
KF S+ G G + ++GYP G+ +V P PA AG+ +GD+I
Sbjct: 251 KFGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGA----LVSQVNPNSPAELAGLKAGDII 306
Query: 143 LAIDDT 148
I+DT
Sbjct: 307 TQINDT 312
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 116 SSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ 163
S G+ + +P A+RAG+ GD +LA++D + + A E L+
Sbjct: 39 SQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILK 86
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 97 QGALTGVGLSIG---------YPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDD 147
QG +G SIG P + D + G+ V GGPA AG+ GD I+ ++
Sbjct: 15 QGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNG 74
Query: 148 TSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTRE 188
+M +D A + LT RS E+ L +TR+
Sbjct: 75 WDM-TMVTHDQARK---------RLTKRS-EEVVRLLVTRQ 104
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 115 GSSAGLVVISSMPGGPANRAGIL-SGDVILAIDDTSTESMGIYDAAERLQ 163
G ++G+VV + +PGG A+R G L +GD IL I T+ + M A+ L+
Sbjct: 35 GKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLR 84
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 97 QGALTGVGLSIG---------YPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDD 147
QG +G SIG P + D + G+ V GGPA AG+ GD I+ ++
Sbjct: 13 QGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNG 72
Query: 148 TSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTRE 188
+M +D A + LT RS E+ L +TR+
Sbjct: 73 WDM-TMVTHDQARK---------RLTKRS-EEVVRLLVTRQ 102
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 8 IALSETPSLALSEENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNE---PMNTREE 64
+A P A ++ ++ + + D + ++ GQ++ + LR P + ++
Sbjct: 109 MARRRMPRSAGKKQYKMICHVFESEDAQLIAQSI-GQAFSVAYQEFLRANGINPEDLSQK 167
Query: 65 TYMAIRKMLATLDDPFTRFLEPEKFNSLR-SGTQGALTGVGL--SIGYPTASDGSSAGLV 121
Y I +D F E L+ +G + GV + S PT ++
Sbjct: 168 EYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESSILPT--------VI 219
Query: 122 VISSMPGGPANRAGILS-GDVILAIDDTS 149
+ + M GGPA R+G LS GD I++I+ TS
Sbjct: 220 LANMMNGGPAARSGKLSIGDQIMSINGTS 248
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 103 VGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAER 161
+G+SI ++D G+ + S M GG G I GD++L ++D + E+M DA
Sbjct: 15 LGISI-VGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRV 73
Query: 162 LQG--PEGSPVELTV 174
L+ + P+ LTV
Sbjct: 74 LREIVSQTGPISLTV 88
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG 164
SA L + G A A + GD+I AI+ STE M +A R++G
Sbjct: 25 SAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG 72
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 120 LVVISSMPGGPANRAGILS-GDVILAID------DTSTESMGI 155
+V+ S PGGPA+R G + GD +L++D T E+M I
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSI 76
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 28.9 bits (63), Expect = 4.8, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 129 GPANRAGIL-SGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 179
G A + G L GD+IL I+ T TE+M + DA + ++ G + +R E
Sbjct: 32 GLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSLE 83
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 127 PGGPANRAGILSGDVILAIDDTSTE 151
PG PA +AG+L+GD ++ ++ + E
Sbjct: 35 PGSPAEKAGLLAGDRLVEVNGENVE 59
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 127 PGGPANRAGILSGDVILAIDDTSTE 151
PG PA +AG+L+GD ++ ++ + E
Sbjct: 36 PGSPAEKAGLLAGDRLVEVNGENVE 60
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 127 PGGPANRAGILSGDVILAIDDTSTE 151
PG PA +AG+L+GD ++ ++ + E
Sbjct: 36 PGSPAEKAGLLAGDRLVEVNGENVE 60
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 127 PGGPANRAGILSGDVILAIDDTSTE 151
PG PA +AG+L+GD ++ ++ + E
Sbjct: 36 PGSPAEKAGLLAGDRLVEVNGENVE 60
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 127 PGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALT 186
PGG A +AG+ GD +L+ID + S+ +A + +R+ E L L+
Sbjct: 36 PGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNK------------IRACGERLSLGLS 83
Query: 187 REKVSL 192
R SL
Sbjct: 84 RAITSL 89
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 117 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 176
SA L + G A A + GD+I AI+ STE M +A R++G + L+V S
Sbjct: 31 SAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCH-DHLTLSVSS 89
Query: 177 G 177
G
Sbjct: 90 G 90
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 28.5 bits (62), Expect = 6.7, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 127 PGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 174
PG PA A + +GD ++ ++ + E + +R++ EG L V
Sbjct: 34 PGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQRIKAVEGQTRLLVV 81
>pdb|2FGE|A Chain A, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
pdb|2FGE|B Chain B, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
Length = 995
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 239 SVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPL 298
S N LR+N+ G FP G+ + + K IYD D + L +EPL
Sbjct: 400 SXNTIEFSLRENNTGSFPRGLSLXLQSISKW-------------IYDXDPFEPLKYTEPL 446
Query: 299 AVL 301
L
Sbjct: 447 KAL 449
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 28.5 bits (62), Expect = 6.8, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 119 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESM 153
G ++ PG PA AG+ + D+++A++ S E++
Sbjct: 30 GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEAL 64
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 28.5 bits (62), Expect = 7.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 131 ANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEG 167
A I GDV+L I+ T TE+M + DA ++ +G
Sbjct: 34 ARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG 70
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 28.5 bits (62), Expect = 7.6, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 119 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESM 153
G ++ PG PA AG+ + D+++A++ S E++
Sbjct: 27 GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEAL 61
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 28.5 bits (62), Expect = 7.6, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 129 GPANRAGIL-SGDVILAIDDTSTESMGIYDAAERLQGPEG 167
G A + G L GD+IL I+ T TE+M + DA + ++ G
Sbjct: 32 GLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRG 71
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 131 ANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEG 167
A I GDV+L I+ T TE+M + DA ++ +G
Sbjct: 37 ARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG 73
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 28.5 bits (62), Expect = 8.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 131 ANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEG 167
A I GDV+L I+ T TE+M + DA ++ +G
Sbjct: 35 ARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG 71
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 28.1 bits (61), Expect = 9.1, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 36/80 (45%)
Query: 104 GLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ 163
G S G+ + G+ + P G A RAG+L+ D ++ ++ + E + E+++
Sbjct: 18 GGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVK 77
Query: 164 GPEGSPVELTVRSGAEIRHL 183
+ L V + RH+
Sbjct: 78 KSGSRVMFLLVDKETDKRHV 97
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 127 PGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ 163
PG A ++ + GD+++AID +T++M +A +++
Sbjct: 34 PGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK 70
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 127 PGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ 163
PG A ++ + GD+++AID +T++M +A +++
Sbjct: 41 PGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,379,748
Number of Sequences: 62578
Number of extensions: 534526
Number of successful extensions: 1557
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1471
Number of HSP's gapped (non-prelim): 122
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)